GENSCAN 1.0	Date run:  5-Nov-116	Time: 10:40:38

Sequence gi568815581f:67937133_68146593 : 209461 bp : 44.55% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +   3492   3524   33  2  0  101  113   -18 0.608   1.90
 1.02 Intr +   7018   7240  223  0  1  106   80   127 0.720  11.40
 1.03 Intr +   8277   8320   44  1  2   81   88   -12 0.575  -3.94
 1.04 Intr +   8843   9193  351  1  0   91  103   177 0.850  15.02
 1.05 Intr +  10594  10676   83  0  2   52   97    36 0.802  -0.66
 1.06 Intr +  10949  11174  226  2  1   59  110   257 0.814  22.99
 1.07 Intr +  22610  22743  134  1  2   89   78    83 0.868   6.84
 1.08 Intr +  26201  26374  174  2  0   56   79   127 0.983   7.65
 1.09 Intr +  27080  27272  193  2  1   71   94   161 0.995  14.49
 1.10 Intr +  29440  29524   85  0  1  106  106    31 0.928   6.09
 1.11 Term +  38640  38830  191  1  2   60   53   178 0.371   9.11
 1.12 PlyA +  38949  38954    6                               1.05

 2.05 PlyA -  41039  41034    6                               1.05
 2.04 Term -  43539  43378  162  0  0   90   43    71 0.257   0.74
 2.03 Intr -  56103  55835  269  1  2   31   37   494 0.176  35.85
 2.02 Intr -  56852  56292  561  0  0  119   97   387 0.999  35.49
 2.01 Init -  59066  58991   76  2  1   77   69    45 0.776   2.20
 2.00 Prom -  69429  69390   40                              -5.16

 3.00 Prom +  69466  69505   40                              -5.66
 3.01 Init +  78573  78575    3  2  0   60  101     0 0.455  -1.50
 3.02 Intr +  82845  83085  241  2  1   56   50   243 0.756  14.42
 3.03 Intr +  98646  98708   63  1  0    3   92   108 0.021   1.39
 3.04 Intr +  99978 100075   98  1  2   71   79    56 0.031   2.73
 3.05 Intr + 100226 100363  138  1  0   36   98   173 0.976  13.76
 3.06 Intr + 103546 103634   89  0  2  113  111    83 0.999  11.87
 3.07 Intr + 104953 105221  269  1  2  121   80    53 0.905   4.98
 3.08 Intr + 105773 105867   95  0  2   86   92    22 0.946   2.08
 3.09 Intr + 105968 106231  264  1  0  109  103   183 0.998  19.61
 3.10 Intr + 106706 106939  234  1  0   97   92   133 0.963  12.49
 3.11 Intr + 107189 107371  183  1  0   70  111   124 0.999  12.88
 3.12 Intr + 108640 108789  150  0  0  101  105    80 0.974  11.36
 3.13 Term + 158428 158628  201  0  0   32   48   227 0.493  10.49
 3.14 PlyA + 158964 158969    6                               1.05

 4.00 Prom + 160642 160681   40                              -4.96
 4.01 Init + 161488 161492    5  0  2   76   55     0 0.280  -5.03
 4.02 Intr + 162456 162576  121  0  1   63   56    99 0.423   4.70
 4.03 Intr + 163985 164106  122  1  2   67   36    81 0.734   0.09
 4.04 Intr + 164580 164827  248  0  2   97   72   154 0.607  11.80
 4.05 Term + 185681 185799  119  0  2   61   54    91 0.009   1.70
 4.06 PlyA + 186403 186408    6                               1.05

 5.09 PlyA - 186470 186465    6                               1.05
 5.08 Term - 189188 189153   36  2  0   82   44    40 0.492  -3.66
 5.07 Intr - 189643 189345  299  2  2  100   78   305 0.846  27.29
 5.06 Intr - 191149 191009  141  2  0   86   38   162 0.928  11.32
 5.05 Intr - 196601 196473  129  0  0   51   55   102 0.491   3.87
 5.04 Intr - 197723 197539  185  1  2   -5   -3   158 0.002  -3.17
 5.03 Intr - 197962 197850  113  1  2  -19   50   234 0.159   8.08
 5.02 Intr - 198317 198074  244  1  1  -16   38   518 0.128  33.90
 5.01 Init - 198472 198333  140  1  2   87  105   207 0.968  21.91

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init + 100001 100075   75  1  0   73   79    95 0.943   8.19
S.002 Term + 109372 109464   93  0  0   59   36    65 0.857  -3.77
S.003 Term - 122881 122751  131  2  2   89   45    74 0.831   1.54
S.004 Term - 143713 143613  101  2  2   70   39    91 0.840   0.69
S.005 Init - 185079 185021   59  0  2   92   74    99 0.908   9.68


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815581f:67937133_68146593|GENSCAN_predicted_peptide_1|578_aa
MAQLTQLTQGHGGNQGLTVVIQGQGQTTGQLQLIPQGVTVLPGPGQQLMQAAMPNGTVQR
FLFTPLATTATTASTTTTTVSTTAAGTGEQRQSKLSPQMQLQIQQPQPQVIAVPQLQQQV
QVLSQIQSQVVAQIQAQQSGVPQQIKLQLPIQIQQSSAVQTHQIQNVVTVQAASVQEQLQ
RVQQLRDQQQKKKQQQIEIKREHTLQASNQSEIIQKQVVMKHNAVIEHLKQKKSMTPAER
EENQRMIVCNQVMKYILDKIDKEEKQAAKKRKREESVEQKRSKQNATKLSALLFKHKEQL
RAEILKKRALLDKDLQIEVQKRKREEEKDSSSKSKKKKMISTTSKETKKDTKLYCICKTP
YDESKFYIGCDLCTNWYHGECVGITEKEAKKMDVYICNDCKRAQEGSSEELYCICRTPYD
ESQFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQSTEDAMTVLTPLTEKDYEGLK
RVLRSLQAHKMAWPFLEPVDPNDAPDYYGVIKEPMDLATMEERVQRRYYEKLTEFVADMT
KIFDNCRYYNPSDSPFYQCAEVLESFFVQKLKGFKASR

>gi568815581f:67937133_68146593|GENSCAN_predicted_CDS_1|1737_bp
atggctcaacttactcagttaacacagggccacggtggcaatcaaggtttgacagtagta
attcaaggacaaggtcaaactactggacagttgcagttgatacctcaaggggtgactgta
ctcccaggcccaggccagcagctaatgcaagctgcaatgccaaatggtactgttcagcga
ttcctctttaccccattggcaacaacagccaccacagccagcaccaccaccaccactgtt
tccacgacagcagcaggtacaggtgaacaaaggcagagtaaactgtcaccccagatgcag
ctacaaatacagcagccacagccccaagtcattgctgtgcctcagctgcaacaacaagtc
caggttctctctcagatccagtcacaggttgtggctcagatacaggctcagcaaagtggt
gtgccccagcaaatcaaactccagttacctatccaaattcagcaaagcagtgctgtgcag
actcaccagattcagaatgtggttacagtgcaggcagccagtgtgcaagagcagttgcaa
agggttcagcaactcagggatcagcagcaaaagaagaaacagcaacagatagaaattaag
cgtgaacacaccctccaagcttctaatcaaagtgaaatcattcagaaacaggtggtgatg
aagcataatgctgtaatagaacatttaaaacagaaaaagagcatgactccagctgaaaga
gaagagaatcaaagaatgattgtctgtaaccaggtgatgaagtatattttggataagata
gataaagaagaaaaacaggcagcaaaaaaacggaagcgtgaagagagtgtggagcagaaa
cgtagcaagcagaatgccactaagctgtcagctctgctcttcaagcacaaagagcagctc
agagccgagatcctgaagaagagagcactcctggacaaggatctgcaaattgaagtgcag
aagaggaagcgggaagaggaaaaagactccagctcaaagtccaagaaaaagaaaatgatc
tctactacctcaaaggaaactaagaaggacacaaagctttactgtatctgtaaaacgcct
tatgatgaatctaagttctatattggctgtgatctttgtactaactggtatcatggagaa
tgtgttggcatcacagaaaaggaggctaagaaaatggatgtgtacatctgtaatgattgt
aaacgggcacaagagggcagcagtgaggaattgtactgtatctgcagaacaccttatgat
gagtcacaattttatattggctgtgatcggtgtcagaattggtaccatgggcgctgcgtt
ggcatcttgcaaagtgaggcagagctcattgatgagtatgtctgtccacagtgccagtca
acagaggatgccatgacagtgctcacgccactaacagagaaggattatgaggggttgaag
agggtgctccgttccttacaggcccataagatggcctggcctttccttgaaccagtagac
cctaatgatgcaccagattattatggtgttattaaggaacctatggaccttgccaccatg
gaagaaagagtacaaagacgatattatgaaaagctgacggaatttgtggcagatatgacc
aaaatttttgataactgtcgttactacaatccaagtgactccccattttaccagtgtgca
gaagttctcgaatcattctttgtacagaaattgaaaggcttcaaagctagcaggtga

>gi568815581f:67937133_68146593|GENSCAN_predicted_peptide_2|355_aa
MTARAFWLLCLIVGSSPEAPVAERKTSPPHSRKPDSRGCPSAEETPGPRAQPLLEAPQRP
RAAEVAPAARAWPDPRRRKPPPPADNQASFREAARAPAGPPGPRLAQAENRASPRREPAS
EDAPRRARSRALRFPAARPPALATEGSAGHAHPNRPRAAALAPGPAPAPPPRFSLSFGLS
PPQRDAEPGAEPCARACRSDLDEREAFCESEFAVNGIVHDVDVLGAGIRLVTLLVDRDGL
YKMNRLYLTPDGFFFRVHMLALDSSSCNKPCPEFKPGIETDLNDAAYVLYTTVCNVGATA
RASPGPPGNFLSFISSCQQSSCGLCQQAGSRVGFTLLGFYLTVTTKGLPNLKKQF

>gi568815581f:67937133_68146593|GENSCAN_predicted_CDS_2|1068_bp
atgacagctagagctttctggctcctctgtttgatcgtcggatcatcccccgaagcaccg
gtggcggagagaaaaacctcgccgccgcacagcagaaagccggactcccgcggctgcccg
agcgcggaggagacaccggggccccgcgcgcagccactccttgaggccccgcagcggccg
cgcgcggccgaggtcgctcccgccgcccgcgcctggcctgacccgcgccgccggaagccc
ccaccgccggccgacaaccaggccagcttccgggaggccgcacgcgcgcccgctggcccg
ccgggcccgcgcctggcgcaagccgagaaccgcgcgtcgccgcgccgcgagcccgcgtcg
gaggacgccccgcgacgcgcgcgctcacgggccctgcgcttccccgccgcccggccgccc
gcgctcgccaccgagggctccgccggccacgcccaccccaaccggccgcgcgccgccgcg
ctggccccgggacccgcgcccgcgccgccgccgcgcttcagcctcagcttcggcctcagc
ccgccgcagagggacgcggagcccggcgctgagccctgcgcgcgcgcctgccggtccgat
ctggacgaacgcgaggcgttctgcgagagcgaattcgcggtgaacgggatcgtgcacgat
gtggacgtgctgggcgcgggcatccggctggtgaccctgctggtggatcgggacgggctg
tacaagatgaaccgcctgtacctcacccccgacggcttcttcttccgagtccacatgtta
gccctggactcctccagctgcaataagccgtgtccagagtttaaacctggtattgaaact
gacctgaatgacgctgcatatgtactttataccaccgtttgtaacgtgggtgccacagcc
cgggcttccccaggacctccaggcaatttcctctccttcatcagcagttgccagcagtca
tcctgtgggctctgccagcaagctggcagcagggtaggattcacactccttggcttctac
ctcacagttaccaccaaaggccttcccaatttaaaaaagcaattttag

>gi568815581f:67937133_68146593|GENSCAN_predicted_peptide_3|675_aa
MDPASHTLSLRDAIITLPPPRIAVSRREASDLAAAPSGGGARLRFSASLSAAWTSRALRH
GPGAAARAPEGLRVTLRALLPVALQPLIPPASPPVEAQARFAAFSLCLITMSTNENANTP
AARLHRFKNKGKDSTEMRRRRIEVNVELRKAKKDDQMLKRRNVSSFPDDATSPLQENRNN
QGTVNWSVDDIVKGINSSNVENQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGR
TDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIA
GDGSVFRDLVIKYGAVDPLLALLAVPDMSSLACGYLRNLTWTLSNLCRNKNPAPPIDAVE
QILPTLVRLLHHDDPEVLADTCWAISYLTDGPNERIGMVVKTGVVPQLVKLLGASELPIV
TPALRAIGNIVTGTDEQTQVVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQI
QQVVNHGLVPFLVSVLSKADFKTQKEAVWAVTNYTSGGTVEQIVYLVHCGIIEPLMNLLT
AKDTKIILVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQNHENESVYKASLS
LIEKYFSVEELEKLCMSDKLWEQIVQSICDTITPDVRSLAEDTGWRQLFFTNKLQLQRQL
RKRKQKYGSLREKQP

>gi568815581f:67937133_68146593|GENSCAN_predicted_CDS_3|2028_bp
atggatccggcttctcacaccctctccttacgcgatgccatcatcacgctcccgcccccg
cgcatcgcggtctcgcgccgagaggcaagtgatttggcagccgcccccagcggcggcggc
gcgcgcctgcgcttttctgcgtccctgtcggccgcctggacttcccgcgcgctgcgccat
gggcccggagcggccgcaagggccccggagggcctgcgcgtgaccctccgagctctcctg
cccgtcgccctacagccgctgattccccccgcatcgcctcccgtggaagcccaggcccgc
ttcgcagctttctccctttgtctcataaccatgtccaccaacgagaatgctaatacacca
gctgcccgtcttcacagattcaagaacaagggaaaagacagtacagaaatgaggcgtcgc
agaatagaggtcaatgtggagctgaggaaagctaagaaggatgaccagatgctgaagagg
agaaatgtaagctcatttcctgatgatgctacttctccgctgcaggaaaaccgcaacaac
cagggcactgtaaattggtctgttgatgacattgtcaaaggcataaatagcagcaatgtg
gaaaatcagctccaagctactcaagctgccaggaaactactttccagagaaaaacagccc
cccatagacaacataatccgggctggtttgattccgaaatttgtgtccttcttgggcaga
actgattgtagtcccattcagtttgaatctgcttgggcactcactaacattgcttctggg
acatcagaacaaaccaaggctgtggtagatggaggtgccatcccagcattcatttctctg
ttggcatctccccatgctcacatcagtgaacaagctgtctgggctctaggaaacattgca
ggtgatggctcagtgttccgagacttggttattaagtacggtgcagttgacccactgttg
gctctccttgcagttcctgatatgtcatctttagcatgtggctacttacgtaatcttacc
tggacactttctaatctttgccgcaacaagaatcctgcacccccgatagatgctgttgag
cagattcttcctaccttagttcggctcctgcatcatgatgatccagaagtattagcagat
acctgctgggctatttcctaccttactgatggtccaaatgaacgaattggcatggtggtg
aaaacaggagttgtgccccaacttgtgaagcttctaggagcttctgaattgccaattgtg
actcctgccctaagagccatagggaatattgtcactggtacagatgaacagactcaggtt
gtgattgatgcaggagcactcgccgtctttcccagcctgctcaccaaccccaaaactaac
attcagaaggaagctacgtggacaatgtcaaacatcacagccggccgccaggaccagata
cagcaagttgtgaatcatggattagtcccattccttgtcagtgttctctctaaggcagat
tttaagacacaaaaggaagctgtgtgggccgtgaccaactataccagtggtggaacagtt
gaacagattgtgtaccttgttcactgtggcataatagaaccgttgatgaacctcttaact
gcaaaagataccaagattattctggttatcctggatgccatttcaaatatctttcaggct
gctgagaaactaggtgaaactgagaaacttagtataatgattgaagaatgtggaggctta
gacaaaattgaagctctacaaaaccatgaaaatgagtctgtgtataaggcttcgttaagc
ttaattgagaagtatttctctgtagaggaattggagaagctgtgcatgtctgataaactg
tgggaacagatagtccagtcgatctgcgacaccatcactcctgacgtgaggtccctggcg
gaggacacgggctggagacagctgttcttcaccaacaagctccagctccagcggcagctc
cgcaagaggaaacaaaaatatggaagcttgagagaaaagcaaccttag

>gi568815581f:67937133_68146593|GENSCAN_predicted_peptide_4|204_aa
MSPSLPDKPCPLLTAPRPIDHPRAEECEHMAQDWQAAPPAAPVSPGWRRQLQDQEQHSWG
FAGTIGVGMLSLPSPEIRQVPGGPRLEEGKAVASAPSAAHGDDAWHIRDPQAAAVASPAA
RAPAPAAVVTPPRLAVAPVPPAAPAARDMSNLGGRRNGPVEVRLTVAPGHLDEYLQITGV
NDGLAWAQRPDIEDPSLSFSDALL

>gi568815581f:67937133_68146593|GENSCAN_predicted_CDS_4|615_bp
atgagcccgagcctccccgacaagccctgccccctgctcacggcgcccaggcccatcgac
cacccaagggctgaggagtgcgagcacatggcacaggactggcaggcagctccacctgca
gccccggtgagtcccggatggaggcgtcaactacaagaccaggaacagcactcctggggc
tttgctggaaccatcggcgtgggaatgctgtctcttccctcgccagaaatacgacaagtt
cccggcgggcctcgcctagaggagggaaaggccgtggcgtccgctccctccgcggctcat
ggcgacgacgcttggcacatccgggaccctcaggccgctgcagtcgcgtcgccggctgct
cgggccccagccccggccgctgtggtgactccgccgcgcctcgccgtcgcccccgtcccg
cccgccgccccagccgccagggacatgtctaacctcggaggccgtaggaacgggcctgtc
gaagtgcgcctgacagttgctccaggccacctggacgaatacctgcagatcacaggggtt
aacgatggcttagcttgggctcagcggcctgacattgaggatccttctttatctttttct
gatgcccttctatga

>gi568815581f:67937133_68146593|GENSCAN_predicted_peptide_5|428_aa
MSVAGLKKQFYKASQLVSEKVGGAEGTKLDDDFEEMEKVDVISKAVTTIEYPQPNPASQA
KLTMLNTACKIRGQVKNPGYLQSGGLLGECLIRHGKELRDESNFSDALLDAGEPMKHLAE
VKDSLDIEKRQGKIPEEELHQALEKFEESKEVAETSMHNLLETDIQREYKPKPRECFDLG
KPEQSNRGFPCTTVPKIAASSSFRSYDKSIWTPSRSMPPLDQPSCKGSRPTEACVTLAQA
ATTSHLHNPQHTLHGTTAPAVLLRAKHKGSSEEASVGNPERVFMKVLQAQKKHMSIELTT
EPEAASDSSGINLSVFGSDQFEIPLTHQLQSVIPNNDVRSFISHVIWTLKTDCSETYVQV
TCAKLISRTGLLMRLLSEQQEVKASKAEWDTDQWKTKNYINESTEAQSEQKEQKSSERVK
QISAQDEL

>gi568815581f:67937133_68146593|GENSCAN_predicted_CDS_5|1287_bp
atgtcggttgccgggctgaagaagcagttctacaaggcgagccaactggtcagtgagaag
gtcggaggggctgaggggaccaagctggatgatgacttcgaagagatggagaaggtggat
gtcatcagcaaggcggtgacgaccatcgagtacccgcagcccaacccagcctcgcaggct
aaactgaccatgctcaacaccgcgtgcaagatccggggccaggtgaagaaccccggctac
ctgcagtcaggggggctcctgggcgagtgcctgatccgccatgggaaggagctgcgcgac
gagtccaacttcagcgatgcactgctggatgccggcgagcccatgaagcacctggcagag
gtgaaggactccctggacatagagaagcggcagggcaagatccccgaagaggagctgcac
caggcgctggagaagtttgaggagtccaaggaggtggcagaaaccagcatgcacaacctc
ctggagaccgacatccagcgggagtataagcccaagccccgggagtgctttgacctcgga
aagcctgagcagtccaaccggggcttcccctgcaccacagtccccaagatcgcagcttcg
tcctctttccgatcttacgacaagtccatctggactcctagcaggagcatgccgccccta
gaccagccgagctgcaagggctccaggcccacagaagcctgtgtcactctggcacaagct
gccaccaccagccacctacacaaccctcagcacaccttgcacgggaccacagccccagct
gtgctgctgagggccaagcacaaaggctccagtgaagaagcatctgtagggaatccagaa
agagtgttcatgaaggtgttacaagcccagaagaagcacatgagcattgagctgactact
gagccggaggcagcctcagacagcagtggcatcaacttgtcagtctttgggagtgatcag
tttgaaattccgctaacccatcaactacagtccgtcatccccaacaacgatgtgagaagc
ttcatttctcatgttatctggaccttgaagacggactgctccgagacctatgtgcaagtg
acctgtgccaagctcatctccaggacaggcctcctgatgaggcttctcagtgagcagcag
gaagtaaaggcgtccaaggcagaatgggatacagaccagtggaaaactaagaactatatt
aatgaaagcacagaagcccagagtgaacagaaagagcagaagtcgagtgagagagtgaaa
cagattagtgcacaggatgaactgtag