GENSCAN 1.0	Date run:  8-Nov-116	Time: 11:46:58

Sequence gi568815581f:67278155_67787184 : 509030 bp : 44.60% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Intr +  15435  15578  144  1  0  110    9   169 0.143  11.45
 1.02 Term +  19131  19261  131  1  2  103   54   106 0.971   7.04
 1.03 PlyA +  19961  19966    6                               1.05

 2.13 PlyA -  20007  20002    6                               1.05
 2.12 Term -  20782  20691   92  2  2   38   48    61 0.087  -5.02
 2.11 Intr -  22553  22520   34  2  1  125  108    35 0.220   7.00
 2.10 Intr -  25247  25097  151  1  1   86   28    57 0.026  -0.34
 2.09 Intr -  46197  46121   77  0  2   88   53   101 0.247   4.91
 2.08 Intr -  53889  53680  210  0  0   92   22   110 0.136   3.91
 2.07 Intr -  64109  64032   78  2  0   97   95    -2 0.542   1.15
 2.06 Intr -  66626  66452  175  1  1   14   66    77 0.674  -1.96
 2.05 Intr -  67703  67591  113  2  2   65  108   102 0.794   9.08
 2.04 Intr -  69096  68962  135  0  0   80  110   -14 0.602   0.76
 2.03 Intr -  69331  69182  150  1  0   22   83    93 0.853   2.56
 2.02 Intr -  70500  70396  105  0  0   65  110    19 0.821   2.21
 2.01 Init -  72170  72075   96  2  0   89   94    79 0.635   8.91
 2.00 Prom -  77258  77219   40                              -1.16

 3.04 PlyA -  77452  77447    6                               1.05
 3.03 Term -  79277  79219   59  0  2  113   54    91 0.786   6.05
 3.02 Intr -  81992  81956   37  2  1   83  100    10 0.690  -0.46
 3.01 Init -  88365  88258  108  0  0  115  100   234 0.998  27.52
 3.00 Prom -  89595  89556   40                              -6.86

 4.00 Prom +  97640  97679   40                              -8.46
 4.01 Init +  99067  99188  122  0  2   63   24   157 0.742   4.46
 4.02 Intr +  99937 100048  112  1  1   39   99   138 0.700  10.38
 4.03 Intr + 100460 101040  581  1  2   94   38   177 0.090   4.80
 4.04 Term + 120330 120522  193  0  1   51   47   231 0.728  12.19
 4.05 PlyA + 121417 121422    6                               1.05

 5.06 PlyA - 121503 121498    6                               1.05
 5.05 Term - 121866 121846   21  0  0  106   50    16 0.006  -2.09
 5.04 Intr - 155098 155004   95  2  2  108  113     2 0.175   4.38
 5.03 Intr - 158521 158390  132  2  0   37  104    31 0.075   0.22
 5.02 Intr - 209940 209853   88  0  1   66   82    64 0.632   3.14
 5.01 Init - 213273 212980  294  0  0   39   46   215 0.659   9.59
 5.00 Prom - 224962 224923   40                              -3.66

 6.00 Prom + 242685 242724   40                              -3.96
 6.01 Init + 252905 252907    3  1  0  108   81     0 0.596   1.30
 6.02 Intr + 254648 254796  149  1  2   85  109   250 0.833  25.83
 6.03 Intr + 274103 274191   89  2  2   99  111    -2 0.290   2.81
 6.04 Intr + 278870 279003  134  0  2   53  107    21 0.038   0.86
 6.05 Intr + 300032 300103   72  1  0  105   84    77 0.251   8.60
 6.06 Intr + 342380 342640  261  1  0   96  -12   148 0.028   3.28
 6.07 Intr + 353989 354084   96  0  0  105   99   184 0.997  21.41
 6.08 Intr + 391354 391509  156  0  0  120  115    66 0.471  12.71
 6.09 Intr + 397325 397388   64  1  1  110  115    37 0.807   6.89
 6.10 Term + 414418 414734  317  2  2   78   32   247 0.105  13.20
 6.11 PlyA + 415347 415352    6                               1.05

 7.00 Prom + 417474 417513   40                              -3.46
 7.01 Init + 439794 440084  291  2  0   74   25   214 0.511  10.93
 7.02 Intr + 441752 441808   57  1  0   37   98    59 0.646   0.88
 7.03 Intr + 443224 443372  149  0  2   76   97   155 0.973  14.23
 7.04 Intr + 444426 444483   58  0  1  111  106   -45 0.573  -1.51
 7.05 Intr + 445895 446039  145  1  1   88   97   -14 0.427  -0.64
 7.06 Intr + 456209 456285   77  0  2   98  108    -1 0.458   2.13
 7.07 Intr + 459354 459538  185  2  2   92   70   165 0.918  13.69
 7.08 Intr + 459693 459818  126  0  0   55  107    35 0.788   1.89
 7.09 Intr + 459968 460178  211  2  1   55   32   163 0.981   6.32
 7.10 Intr + 465325 465432  108  0  0  101   72    39 0.929   4.08
 7.11 Intr + 465589 465621   33  0  0   77  100    34 0.480   1.92
 7.12 Intr + 465771 465822   52  2  1   69   70    23 0.065  -2.92
 7.13 Term + 472943 473091  149  0  2   85   45   112 0.824   4.66
 7.14 PlyA + 473619 473624    6                               1.05

 8.00 Prom + 495644 495683   40                              -3.26
 8.01 Sngl + 506876 507151  276  1  0   36   38   227 0.672   7.88
 8.02 PlyA + 507593 507598    6                               1.05


Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init +  18893  18902   10  1  1   66  113     2 0.861   1.08
S.002 Term + 100460 101089  630  1  0   94   35   171 0.901   6.72
S.003 Term + 342380 342667  288  1  0   96   42   150 0.805   6.58
S.004 Term - 361587 361477  111  0  0   96   49   106 0.947   6.06


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815581f:67278155_67787184|GENSCAN_predicted_peptide_1|91_aa
XLRPFLGLKLLGLPQGPERLTTHGSTGPLVTTERRLQLFLATLREIKERLRPFLGLKLLG
LPQGPERLTTYGSTGPLVTTERRLQLFLATL

>gi568815581f:67278155_67787184|GENSCAN_predicted_CDS_1|276_bp
ngcctgcgtcccttcctggggctgaagcttctgggcctgccccagggtcctgaacggctg
acaacacacggatcaactggaccactggtgaccacagaaaggaggctgcagctgtttctt
gctacgcttcgagagatcaaagagcgcctgcgtcccttcctggggctgaagcttctgggc
ctgccccagggtcctgaacggctaacaacatacgggtcaactggaccactggtgaccaca
gaaaggaggctgcagctgtttcttgctaccctttga

>gi568815581f:67278155_67787184|GENSCAN_predicted_peptide_2|471_aa
MVQQCCTYVEEITDLPIKLRLIDTLRMVTEGKIYVEIERARLTKTLATIKEQNGDVKEAA
SILQELQVETYGSMEKKERVEFILEQMRLCLAVKDYIRTQIISKKINTKFFQEENTEKLK
LKYYNLMIQLDQHEGSYLSICKHYRAIYDTPCIQAESEKWQQALKSVVLYVILAPFDNEQ
SDLVHRISGDKKLEEIPKYKDLLKLFTTMELMRWSTLVEDYGMELRKGSLESPATDVFGS
TEEGEKRWKDLKNRVVEHNIRIMAKYYTRITMKRMAQLLDLSVDVTLMQEVASHGLGKLC
PCGFAGYSPPPGCFHGLALSVAFPGARCKLSVDLPFWDLEDSGPLLTAPLGHAPETSQKQ
LDHLDILQSIPLGHNIDDRRMTVPIIVQMIHQYLSCTTSGLFSPICYFSNYLFRVDFKQL
KACTATPCLAVIGVQVMFGYTILSHWKVFRGNNMHGAVISYDNHYCFCNAS

>gi568815581f:67278155_67787184|GENSCAN_predicted_CDS_2|1416_bp
atggttcaacagtgctgtacttatgttgaggaaatcacagaccttcctatcaaacttcga
ttaattgatactctacgaatggttaccgaaggcaagatttatgttgaaattgagcgtgcg
cgactgactaaaacattagcaactataaaagaacaaaatggtgatgtgaaagaggcagcc
tccattttacaggagttacaggtggaaacctacgggtcaatggaaaagaaagagcgagtg
gaatttattttggagcaaatgaggctctgcctagctgtgaaggattacattcgaacacaa
atcatcagcaagaaaattaacaccaaatttttccaggaagaaaatacagagaaattaaag
ttgaagtactataatttaatgattcagctggatcaacatgagggatcctatttgtctatt
tgtaagcactacagagcaatatatgatactccctgtatacaggcagaaagtgaaaaatgg
cagcaggctctgaagagtgttgtactctatgttatcctggctccttttgacaatgaacag
tcagatttggttcaccgaataagtggtgacaagaagttagaagaaattcccaaatacaag
gatcttttaaagctttttaccacaatggagttgatgcgttggtccacacttgttgaggac
tatggaatggaattaagaaaaggttcccttgagagtcctgcaacggatgtttttggttct
acagaggaaggtgaaaaaaggtggaaagacttgaagaacagagttgttgaacataatatt
agaataatggccaagtattatactcggataacaatgaaaaggatggcacagcttctggat
ctatctgttgatgtcacgctgatgcaagaggtggcctcccatggccttgggaagctctgc
ccttgcggctttgcagggtatagcccccctcctggctgctttcatgggctggcattgtct
gtggcttttccaggtgcacggtgcaagctgtcagtggatttaccattctgggatctggag
gacagtggcccacttctcacagccccactaggccatgccccagagacatcccaaaagcag
ctggaccatctggacatcctgcagagcatcccactaggccacaatattgatgacaggaga
atgacagttccaattattgttcagatgatacatcaatacctctcatgcaccacctcaggc
cttttcagccccatctgttacttttccaactacctcttccgcgtagacttcaaacaactt
aaagcttgcacggccacaccgtgtcttgccgttattggggtgcaggtgatgtttggttac
acaatcttgtcccactggaaggtcttcaggggcaataacatgcatggagctgtcatctcc
tatgataaccattactgcttctgtaatgcctcctga

>gi568815581f:67278155_67787184|GENSCAN_predicted_peptide_3|67_aa
MADGGSERADGRIVKMEVDYSATVDQRLPECAKLAKIVTIEMTLIKAKGFRYGIDIPYLS
CSSEDVL

>gi568815581f:67278155_67787184|GENSCAN_predicted_CDS_3|204_bp
atggcggacggcggctcggagcgggctgacgggcgcatcgtcaagatggaggtggactac
agcgccacggtggatcagcgcctacccgagtgtgcgaagctagccaagatagtaaccata
gagatgactttgatcaaagcgaaaggcttccgatatggtatcgacatcccgtatcttagt
tgcagtagtgaagatgtgctatga

>gi568815581f:67278155_67787184|GENSCAN_predicted_peptide_4|335_aa
MGLPSPPRPLLMSASLALAPPAPTSRPQAHCIGADAPAPASSLAGLGGAPRFPPRGSAAG
RTMLLKEYRICMPLTVDEVGVRGGALRPRDLHAPSPAGGTSEPLGEVPAGPDFSPSPRAW
AQLPARPPFEARDPAVSFRKPPGSETFCVSCFFRRGERRASRERRGLRRGHRRALQHVVP
GPRLPAGGAGRGAGARPPSAALLSFSRSCEAASSSIQEVVTQIGLFRPRLPFLPLLPPHL
CGDSTTAERLCPGTAREPKAKQGNVKLTSVVWHWLCDVQLGVVEKNWALPVDQCRLQELQ
FLVHLIDLLSILLSCNGFPRIQKAVMDQTSSSDHQ

>gi568815581f:67278155_67787184|GENSCAN_predicted_CDS_4|1008_bp
atggggctaccctccccgccgcggccgctgctgatgtcagcctcgctcgcgctcgctcct
cccgcacccacctcccggccccaggcacactgcatcggcgcggacgctccggccccggcg
agcagccttgctggtcttgggggcgccccccgcttcccgccccgggggtccgcggccggc
aggaccatgctgctgaaagagtaccggatctgcatgccgctcaccgtagacgaggtaggg
gtgcgaggaggagccctgcgccctcgggatctgcacgccccgagccccgcgggaggaacc
tctgagcccttaggggaggtccctgcggggcccgacttctcgccgtcgccgcgggcttgg
gcgcagctcccggcacgtccgcccttcgaggctcgggacccggctgtgtcctttcgcaaa
ccgcctggctcggaaactttctgcgtctcttgtttcttccgccgcggggagcggcgcgcg
agccgggagcggcgggggctgcgacgcggccacaggagggcgctccagcacgtggtgccg
gggccgcggctgccggctgggggcgccgggcgcggggcgggggctcgtcctccaagcgcg
gctctgctgtccttctcccgatcctgcgaagccgcgagctccagtattcaggaagtggtg
actcagataggattattccggccccggcttccctttcttccccttcttcctccccacctt
tgtggtgattccacgactgctgagcgtctctgtccagggacagcgagggagcccaaagcc
aagcaaggcaacgtgaaactcactagtgtggtttggcattggttgtgcgacgtgcagttg
ggtgttgtggagaagaattgggcccttcctgttgaccagtgccggctgcaggagttgcag
tttttggtgcatctcatcgatttgctgagcatacttctcagctgtaatggtttccccagg
attcagaaagccgtaatggatcagaccagcagcagcgaccaccagtga

>gi568815581f:67278155_67787184|GENSCAN_predicted_peptide_5|209_aa
MPPTLDSREAAVPCTQMTQKAFLNERPGIVTHAGSHIWQIWVTSRTVLSVLRVPGNALPR
VKCTSCSGRLRSHASLRHPDGHTLWGWLRLRAPEAEPTYSRGKEKLQQGENPASNSSFEL
LGNPNLSTLHTAKKHESDYVTSGFRTLSGSHCKKDISQTPSQAPNAFHALSGLASLGLAQ
LNSFLALTARRQENYRKQKRENHSRLRIA

>gi568815581f:67278155_67787184|GENSCAN_predicted_CDS_5|630_bp
atgcctccaaccctggacagcagggaagcagcagtgccctgcacccagatgacccagaaa
gcatttcttaatgaacggcccggcattgtgactcatgctggctcccacatctggcagatc
tgggttacatcacgcacggtcctcagtgtcctgcgggttcctgggaacgcgctgcccaga
gtcaagtgcaccagctgcagtggccggctgcgttcacacgcctctctgcgtcatcctgat
ggccacacactatggggctggctccggctccgggctccagaggctgagccgacttattct
aggggcaaagaaaaacttcagcaaggagaaaatcccgccagcaacagctcttttgagctg
ctcggtaatccaaacctttcaactctgcacacagccaagaaacatgaatcagattatgtc
acttctggttttagaactctcagtggctcccattgcaaaaaggacatatcccaaactccc
agccaggccccgaacgctttccacgccctgtccggtctggcttcccttggtctggcccaa
ctaaattctttcctggcactgactgccaggagacaggaaaactatagaaagcagaagagg
gagaaccacagtaggctccgtattgcatga

>gi568815581f:67278155_67787184|GENSCAN_predicted_peptide_6|446_aa
MYKIGQLYMISKHSHEQSDRGEGVEVVQNEPFEDPHHGNGQFTEKRVYLNSKLPSWARAV
VPKIFYVTEKAWNYYPYTITEACSVLAHVALMKHHRLGGLSSRHLFLTVAEAESATGFLV
RAVFLCSFLPKFSIHIETKYEDNKGSNDTACRHLTGDRIFSDTLRPETFAFSLLYNSLLA
LEKQFSPLRQRPNDIVHQKGFSREALKFTQQLRRSGLTLMDEFPLLSLNTPEILWQIFDN
EAKDVEREVCFIDIACDEIPERYYKESEDPKHFKSEKTGRGQLREGWRDSHQPIMCSYKL
VTVKFEVWGLQTRVEQFVHKVVRDILLIGHRQAFAWVDEWYDMTMDEVREFERATQEATN
KKIGIFPPAISISSIPLLPSSVRSAPSSAPSTPLSTDAPEFLSVPKDRPRKKSAPETLTL
PDPEKKATLNLPGMHSSDKPCRPKSE

>gi568815581f:67278155_67787184|GENSCAN_predicted_CDS_6|1341_bp
atgtacaaaattggacagctgtacatgatcagcaaacacagccatgaacagagtgaccgg
ggagaaggggtggaggtcgtccagaatgagccctttgaggaccctcaccatggcaatggg
cagttcaccgagaagcgggtgtatctcaacagcaaactgcctagttgggctagagctgtt
gtccccaaaatattttatgtgacagagaaggcttggaactattatccctacacaattaca
gaggcctgttctgtgttagctcatgttgctctaatgaaacaccacagacttgggggcttg
agcagcagacatttatttctcacagttgcagaagctgaaagtgcgactgggttcctggtg
agggctgtcttcctgtgttcctttctgccgaaattctccattcatatagaaaccaagtat
gaggacaacaaaggaagcaatgacaccgcttgtcgccacctcactggggacagaattttc
tcagacactctcaggcctgaaacctttgccttcagtttgctttacaactccctgctggct
ctggaaaaacaattttcccctctgcgccaaaggcctaatgatattgtccaccagaaaggg
ttctccagagaagcactgaagtttacccagcagctaagacgatccggcctaaccctgatg
gatgagtttcctttactcagccttaatacccctgaaatcctgtggcaaattttcgacaat
gaagccaaagacgtggagagagaagtttgctttattgatattgcctgcgatgaaattcca
gagcgctactacaaagaatctgaggatcctaagcacttcaagtcagagaagacaggacgg
ggacagttgagggaaggctggagagatagtcatcagcctatcatgtgctcctacaagctg
gtgactgtgaagtttgaggtctgggggcttcagaccagagtggaacaatttgtacacaag
gtggtccgagacattctgctgattggacatagacaggcttttgcatgggttgatgagtgg
tatgacatgacaatggatgaagtccgagaatttgaacgagccactcaggaagccaccaac
aagaaaatcggcattttcccacctgcaatttctatctccagcatccccctgctgccttct
tccgtccgcagtgcgccttctagtgctccatccacccctctctccacagacgcacccgaa
tttctgtccgttcccaaagatcggccccggaaaaagtctgccccagaaactctcacactt
ccagaccctgagaaaaaagccaccctgaatttacccggcatgcactcttcagataagcca
tgtcggcccaaatctgagtaa

>gi568815581f:67278155_67787184|GENSCAN_predicted_peptide_7|546_aa
MAALEEEFTLSSVVLSAGPEGLLGVEQSDKTDQFLVTDSGRTVILYKVKAIGLGAPRLPS
RPFLSAELELKFLTASERDRGEGLAESRLGLLGTLSEVLRIWNNEDVNLDKVFKATLSAE
VYRILSVQGTEPLVLFKEGAVRGLEALLADPQQKIETVISDEEVIKWTKFFVVFRHPVLI
FITEKHGNYFAYVQMFNSRILTKYTLLLGQDENSVIKSFTASVDRKFISLMSLKCLSVWN
IKFQTLQTSKELPQGTSGQKDSEKHIEVEVRKFLALKQTPDFHTVIGDTVTGLLERCKAE
PSFYPRNCLMQLIQTHVLSYSLCPDLMEIALKKKDVQLLQLCLQQFPDIPESVTCACLKI
FLSIGDDSLQETDVNMESVFDYSINSVHDEKMEEQTEILQNGFNPEEDKCNNCDQELNKK
PQDETKESTSCPVIMDWICLLLDANFTVVVMMPEAKRLLINLYKLVKSQISVYSELNKIE
ARTVFCLRPSQCQEKRVRDKNLGPTKHGYKEGCTPSTSGEQLPHVMGSSSRAKPALEPWA
RAGQQD

>gi568815581f:67278155_67787184|GENSCAN_predicted_CDS_7|1641_bp
atggcagcgctggaggaagaattcacgttgtcttcggtagtcctgagcgccgggcctgaa
ggactcctaggcgtggagcagagcgacaaaacagaccagtttctagtgacagacagcggc
aggacagtcatcctctataaggtgaaggcaataggtttgggagcgccccgactgccttct
cgcccctttctgagcgcggagctcgagctcaagtttctcacagcttcagaaagagatcgt
ggagaaggcttagcagagagccggctgggcctgttggggacgctgagtgaggttttaaga
atatggaataatgaagatgtaaacctggataaagtatttaaagctacattgtcagcagaa
gtatataggatactttcagtgcaagggacagaacccttggtgctcttcaaggaaggtgct
gttcgtggtttagaggccttgcttgcagacccccagcagaaaattgaaactgttatctct
gatgaagaagtgattaaatggacaaagtttttcgtagtattcagacatcctgttttaatt
tttattactgaaaaacatggaaattactttgcttacgtgcaaatgtttaactcacgtatc
ttaaccaaatatacactcttacttggacaagacgaaaactctgttataaagagttttact
gcatctgtagatcggaaattcatctctttgatgtcattaaaatgcctctctgtatggaac
ataaaatttcaaacactacagacttcaaaagagttaccacaagggaccagtggtcaaaaa
gattcagaaaaacacattgaagtagaagtacggaaatttttggctctgaagcagacacct
gactttcatactgtcattggggacacagtaacaggacttctggaaaggtgtaaagcagaa
ccatcattttatccccggaactgtctgatgcagcttatccaaacgcatgtgctttcttac
agtttgtgccccgacttaatggagattgccttaaaaaagaaagatgtacagttgttacaa
ctctgtctacagcagttccctgacattcctgaatcagtcacctgtgcttgcttaaaaatt
ttcttgagcattggtgatgacagtcttcaagaaacagatgttaatatggagtcagttttt
gactatagtataaattctgtacatgatgagaaaatggaagagcaaactgaaattcttcaa
aatggcttcaatcctgaagaagataaatgcaataactgtgatcaagagttaaataaaaag
ccccaggacgaaacaaaggagagcacttcatgccctgtgattatggattggatatgtcta
cttctggatgcaaattttactgttgttgtaatgatgccagaagcaaagaggctactgata
aatctttacaagcttgtaaaatctcagatatctgtttattctgagctcaacaagattgaa
gcaagaacggtgttttgtttgcgaccatctcagtgtcaagagaaacgtgtcagggataag
aacttgggacccaccaagcacgggtacaaagaaggctgtacaccctccaccagtggagag
cagctgcctcatgtgatgggaagcagcagcagggccaagccagccctggagccttgggcc
agagcagggcaacaggactga

>gi568815581f:67278155_67787184|GENSCAN_predicted_peptide_8|91_aa
MLKNAEFKGLDIDSLVIEHIQVNKAPKKGCWTYRAHGWINPCMSSPCHTEIILTEKEQIV
PKPEDEVAQKKKISQKKLKKQKLMTQDYIQH

>gi568815581f:67278155_67787184|GENSCAN_predicted_CDS_8|276_bp
atgcttaaaaatgcagaatttaagggtttagatatagattctctggtcattgagcatatc
caagtgaacaaagcacctaagaagggctgctggacctacagagctcatggttggattaac
ccatgcatgagctctccctgccacactgagattatccttactgaaaaggaacagattgtt
cctaaaccagaagacgaggttgcccagaagaaaaagatatcccagaagaaactgaagaaa
caaaaactgatgacacaggactacattcagcattaa