GENSCAN 1.0	Date run:  8-Nov-116	Time: 14:47:07

Sequence gi568815581f:16117227_16425895 : 308669 bp : 43.80% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.16 Intr -    801    662  140  1  2   79   87    24 0.458   1.58
 1.15 Intr -   2259   2197   63  1  0   95   94    88 0.625   8.79
 1.14 Intr -   4043   3826  218  1  2   51   81   197 0.961  13.45
 1.13 Intr -   8983   8856  128  1  2   34   89   223 0.708  16.48
 1.12 Intr -  20986  20932   55  0  1   51  116    -9 0.046  -2.82
 1.11 Intr -  21960  21782  179  0  2   69   30   165 0.088   7.52
 1.10 Intr -  26470  26380   91  0  1   63   94    12 0.920  -0.70
 1.09 Intr -  29322  29150  173  0  2   40  101   149 0.964  10.14
 1.08 Intr -  31982  31955   28  1  1   92  113   -21 0.791  -1.08
 1.07 Intr -  34772  34720   53  2  2   60  105    74 0.857   4.01
 1.06 Intr -  36169  36113   57  1  0   73  119    31 0.932   3.78
 1.05 Intr -  41647  41534  114  1  0   72  102   132 0.981  13.64
 1.04 Intr -  47935  47753  183  1  0   68   38   104 0.801   3.38
 1.03 Intr -  54769  54577  193  0  1   62   94    60 0.630   3.49
 1.02 Intr -  69461  69328  134  2  2   63   95    87 0.791   6.34
 1.01 Init -  77343  77236  108  0  0   34  110    41 0.478   1.12
 1.00 Prom -  92858  92819   40                              -3.96

 2.00 Prom +  93204  93243   40                              -3.16
 2.01 Init + 100001 100235  235  1  1   86   91   179 0.969  14.30
 2.02 Intr + 116745 116844  100  1  1   68   90    92 0.614   6.57
 2.03 Intr + 150709 150875  167  1  2   64   65    61 0.009   1.00
 2.04 Intr + 169384 169582  199  2  1  -16   36   168 0.046  -0.39
 2.05 Intr + 182662 182752   91  1  1   68   95    71 0.065   5.80
 2.06 Intr + 196321 196388   68  0  2  112   64    51 0.187   2.80
 2.07 Intr + 199455 199486   32  0  2  129  116    -5 0.694   4.17
 2.08 Intr + 200549 200682  134  0  2  102  100   203 0.995  23.26
 2.09 Term + 208574 208672   99  1  0   94   48    81 0.979   2.83
 2.10 PlyA + 210577 210582    6                               1.05

 3.06 PlyA - 214191 214186    6                               1.05
 3.05 Term - 225715 225591  125  2  2   78   49   178 0.954  11.45
 3.04 Intr - 227485 227371  115  1  1   58  109    80 0.994   7.12
 3.03 Intr - 231459 231390   70  2  1   58   86    65 0.729   2.48
 3.02 Intr - 232803 232705   99  2  0   59   89    52 0.712   1.63
 3.01 Init - 236210 235801  410  2  2   94   70   552 0.984  50.03
 3.00 Prom - 241977 241938   40                              -3.86

 4.00 Prom + 257402 257441   40                              -4.66
 4.01 Init + 261856 261888   33  0  0  107   77    75 0.141   6.23
 4.02 Term + 264676 265371  696  0  0   67   31  1342 0.168 119.95
 4.03 PlyA + 265492 265497    6                               1.05

 5.04 PlyA - 266256 266251    6                               1.05
 5.03 Term - 274387 274269  119  2  2  105   47   168 0.962  13.10
 5.02 Intr - 288103 288053   51  2  0  108   63    20 0.287   0.38
 5.01 Init - 289867 289789   79  1  1   58   89    38 0.404   0.78
 5.00 Prom - 292366 292327   40                              -8.66

 6.00 Prom + 293448 293487   40                              -4.96
 6.01 Init + 297233 297236    4  1  1   97   68     0 0.276  -0.94
 6.02 Intr + 298546 298615   70  2  1  103   60    43 0.694   1.24
 6.03 Intr + 300475 300642  168  1  0   62   94   174 0.700  14.46
 6.04 Intr + 302889 303022  134  0  2   53   74   233 0.999  18.69
 6.05 Intr + 305373 305663  291  1  0  117  109   323 0.997  34.41
 6.06 Intr + 306243 306541  299  1  2   93   83   323 0.963  28.89

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term -  21960  21778  183  0  0   69   28   177 0.900   7.34
S.002 Init +  97696  97755   60  0  0   51   44    96 0.813   2.75
S.003 Sngl + 264682 265371  690  0  0   82   31  1336 0.821 123.50


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815581f:16117227_16425895|GENSCAN_predicted_peptide_1|639_aa
MSSSGYPPNQGAFSTEQSRYPPHSVQYTFPNTRHQQEFAVPDYRSSHLEVSQASQLLQQQ
QQQQLRRRPSLLSEFHPGSDRPQERRTSYEPFHPGPSPVDHDSLESKRPRLEQVSDSHFQ
RVSAAVLPLVHPLPEGLRASADAKKDPAFGGKHEAPSSPISGQPCGDDQNASPSKLSKEE
LIQSMDRVDREIAKVEQQILKLKKKQQQLEEEAAKPPEPEKPVSPPPVEQKHRSIVQIIY
DENRKKAEEAHKIFEGLGPKVELPLYNQPSDTKVYHENIKTTFSFSQNKTEQKICQRYDQ
LMEAWEKKVDRIENNPRRKAKESKTREYYEKQFPEIRKQREQQERFQRVGQRGAGLSATI
ARSEHEISEIIDGLSEQENNEKQMRQLSVIPPMMFDAEQRRVKFINMNGLMEDPMKVYKD
RQFMNVWTDHEKEIFKDKFIQHPKNFGLIASYLERKQQIARPSQEEKVEEKEEDKAEKTE
KKEEEKKDEEEKDEKEDSKENTKEKDKIDGTAEETEEREQATPRGRKTANSQGRRKGRIT
RSMTNEAAAASAAAAAATEEPPPPLPPPPEPISTEPVETSRWTEEEMEVAKKGLVEHGRN
WAAIAKMVGTKSEAQCKNFYFNYKRRHNLDNLLQQHKQK

>gi568815581f:16117227_16425895|GENSCAN_predicted_CDS_1|1917_bp
atgtcaagttcaggttatcctcccaaccaaggagcattcagcacagaacaaagtcgttat
cctcctcactctgtccagtatacatttcccaacacccgccaccagcaggagttcgcagtc
cctgattatcgttcctctcatcttgaagtgagtcaggcatcacagcttttgcagcaacag
cagcagcaacagcttcgaaggcgaccttccttgctttcagaatttcacccaggttctgac
aggcctcaagaaaggagaactagttatgaaccgtttcatccaggcccatccccagtggat
catgattcactggaatcgaagcgaccacgtctggaacaggtttctgattctcattttcag
cgtgtcagtgctgcggttttgcctttagtgcacccgctgccagaagggctgagggcttct
gcagatgctaagaaggatccagcattcggaggcaaacatgaagctccatcctctccaatt
tcggggcaaccatgtggagatgatcaaaatgcttcaccttcaaaactctcaaaggaagag
ttaatacagagtatggatcgtgtagatcgagaaattgcaaaagtagaacagcagatcctt
aaactgaaaaagaaacaacaacagcttgaagaagaggcagctaaacctcctgagcctgag
aagcccgtgtcccctcctcctgtggagcagaaacaccgcagtattgtccaaattatttat
gatgagaatcggaaaaaagcagaagaagctcataaaatttttgaaggtcttggcccaaaa
gttgaactgccactgtataaccagccatcagataccaaggtgtaccatgagaacatcaag
acaacattttcatttagtcaaaataaaacggaacaaaaaatctgccagcgttatgatcag
ctcatggaggcatgggagaaaaaagtggacagaatagaaaataatcctcggaggaaagct
aaagaaagcaaaacaagggaatactatgaaaagcagtttccagaaattcgaaaacaaaga
gaacagcaagaaagatttcagcgagttgggcagaggggagctggtctttcagccaccatt
gctaggagtgagcatgagatttctgaaattattgatgggctctctgagcaggagaataat
gagaaacaaatgcggcagctctctgtgattccacctatgatgtttgatgcagaacaaaga
cgagtcaagttcattaacatgaatgggcttatggaggaccctatgaaagtgtataaagat
aggcagtttatgaatgtttggactgaccatgaaaaggagatctttaaggacaagtttatc
cagcatccaaaaaactttggactaattgcatcatacttggagaggaagcagcaaattgct
cgaccctcgcaagaagaaaaagtagaagaaaaagaagaggataaagcagaaaaaacagaa
aaaaaagaagaagaaaagaaagatgaagaggaaaaagatgaaaaagaagactccaaagaa
aataccaaggaaaaggacaagatagatggtacagcagaagaaactgaggaaagagagcaa
gccacaccccgggggcgaaagactgccaacagtcagggccgccgtaagggccggatcacc
aggtccatgacaaacgaagctgcagctgccagtgctgcagccgcagcggctactgaagag
cccccaccacctctgccaccgccaccagaacccatttctacagagcctgtggagacctct
cgatggacagaagaagaaatggaagttgctaaaaaaggtctagtagaacatggtcgtaac
tgggcagcaattgctaaaatggtgggaacgaaaagtgaagctcaatgtaaaaacttctat
tttaactataaaaggcgacacaatcttgacaacctcttacagcagcataaacagaaa

>gi568815581f:16117227_16425895|GENSCAN_predicted_peptide_2|374_aa
MEAMWLLCVALAVLAWGFLWVWDSSERMKSREQGGRLGAESRTLLVIAHPDDEAMFFAPT
VLGLARLRHWVYLLCFSAGNYYNQGETRKKELLQSCDVLGIPLSSVMIIDNRQEQTKSRL
FRLVSRTDSSLKELPDQGGEETVNIHHAVVTAEMEHKGKFRERSQKRGRDFEFGAFSRGI
NTVFAKYTPGKESSGFYESHLKDWQELASSVVFLASKIVVSPQSQTRNAIMLMRDFPDDP
GMQWDTEHVARVLLQHIEVNGINLVVTFDAGGVSGHSNHIALYAAVRALHSEGKLPKGCS
VLTLQSVNVLRKYISLLDLPLSLLHTQDVLFVLNSKEVAQAKKAMSCHRSQLLWFRRLYI
IFSRYMRINSLSFL

>gi568815581f:16117227_16425895|GENSCAN_predicted_CDS_2|1125_bp
atggaagcaatgtggctcctgtgtgtggcgttggcggtcttggcatggggcttcctctgg
gtttgggactcctcagaacgaatgaagagtcgggagcagggaggacggctgggagccgaa
agccggaccctgctggtcatagcgcaccctgacgatgaagccatgttttttgctcccaca
gtgctaggcttggcccgcctaaggcactgggtgtacctgctttgcttctctgcaggaaat
tactacaatcaaggagagactcgtaagaaagaacttttgcagagctgtgatgttttgggg
attccactctccagtgtaatgattattgacaacaggcaagagcagacaaagagcagactc
tttagactggtaagcagaacagactcgtccctcaaggagctcccagaccagggaggggag
gagactgtaaatattcaccatgccgtggtaacagcagagatggagcacaaggggaagttc
agagaaagatctcagaagagagggcgggacttcgagtttggggccttttccagaggtatt
aacactgtgtttgctaaatacaccccagggaaggagtcgtcgggcttctacgagtcacac
ttaaaagactggcaagagttggcttcttctgttgtgttcttagcttccaaaatagtagtc
tctcctcagagccagacgcgcaatgccatcatgttaatgagggatttcccagatgaccca
ggcatgcagtgggacacagagcacgtggccagagtcctccttcagcacatagaagtgaat
ggcatcaatctggtggtgactttcgatgcagggggagtaagtggccacagcaatcacatt
gctctgtatgcagctgtgagggccctgcactcagaagggaagttacctaaagggtgctct
gtgctcacgcttcagtctgtgaatgtgctgcgcaagtacatctcccttctggatctgccc
ttgtctctgcttcatacgcaggatgtcctcttcgtgctcaacagcaaagaagtggcacag
gccaagaaagccatgtcctgccaccgcagccagctcctctggttccgccgcctctacatt
atcttctcccggtacatgagaatcaactcactgagcttcctctga

>gi568815581f:16117227_16425895|GENSCAN_predicted_peptide_3|272_aa
MRRSRSSAAAKLRGQKRSGASAAPAASAAAALAPSATRTRRSASQAGSKSQAVEKPPSEK
PRLRRSSPRAQEEGPGEPPPPELALLPPPPPPPPTPATPTSSASNLDLGEQRERWETFQK
RQKLTSEGAAKLLLDTFEYQGLVKHTGGCHCGAVRFEVWASADLHIFDCNCSICKKKQNR
HFIVPASRFKLLKGAEHITTYTFNTHKAQHTFCKRCGVQSFYTPRSNPGGFGIAPHCLDE
GTVRSMVTEEFNGSDWEKAMKEHKTIKNMSKE

>gi568815581f:16117227_16425895|GENSCAN_predicted_CDS_3|819_bp
atgcggcgatcgaggagctctgcggccgccaagctgcgcgggcagaagcggtccggggcc
tccgcggcccccgcggcctccgcggccgctgccttggcacccagcgccacccgcacacgg
cgctccgctagccaggccgggagcaagagccaggcggtggagaagccgccgtcggagaag
ccgcggctgaggcgctcgtcgccgcgggcccaggaggagggcccgggggagccgccgccg
cctgagctggcgttgctcccgccaccgccgccgccgccgccgactcccgcgaccccgacg
tcctcggcgtccaacctggacctgggcgagcagcgggagcgctgggagacgttccagaag
cggcagaagcttacctccgagggtgccgccaagctcctgctagacacctttgaataccag
ggcctggtgaagcacacaggaggctgccactgtggagcagttcgttttgaagtttgggcc
tcagcagacttgcatatatttgactgcaattgcagcatttgcaagaagaagcagaataga
cacttcattgttccagcttctcgcttcaagctcctgaagggagctgagcacataacgact
tacacgttcaatactcacaaagcccagcataccttctgtaagagatgtggcgttcagagc
ttctatactccacgatcaaaccccggaggcttcggaattgccccccactgcctggatgag
ggcactgtgcggagtatggtcactgaggaattcaatggcagcgattgggagaaggccatg
aaagagcacaagaccatcaagaacatgtctaaagagtga

>gi568815581f:16117227_16425895|GENSCAN_predicted_peptide_4|242_aa
MGSSLASLGLVVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAG
KQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQ
DKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITL
EVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG
GC

>gi568815581f:16117227_16425895|GENSCAN_predicted_CDS_4|729_bp
atgggctccagcctcgcctctctgggcctggtggtcaaaatgcagatcttcgtgaaaacc
cttaccggcaagaccatcacccttgaggtggagcccagtgacaccatcgaaaatgtgaag
gccaagatccaggataaggaaggcattccccccgaccagcagaggctcatctttgcaggc
aagcagctggaagatggccgtactctttctgactacaacatccagaaggagtcgaccctg
cacctggtcctgcgtctgagaggtggtatgcagatcttcgtgaagaccctgaccggcaag
accatcaccctggaagtggagcccagtgacaccatcgaaaatgtgaaggccaagatccag
gataaagaaggcatccctcccgaccagcagaggctcatctttgcaggcaagcagctggaa
gatggccgcactctttctgactacaacatccagaaggagtcgaccctgcacctggtcctg
cgtctgagaggtggtatgcagatcttcgtgaagaccctgaccggcaagaccatcactctg
gaggtggagcccagtgacaccatcgaaaatgtgaaggccaagatccaagataaagaaggc
atcccccccgaccagcagaggctcatctttgcaggcaagcagctggaagatggccgcact
ctttctgactacaacatccagaaagagtcgaccctgcacctggtcctgcgcctgaggggt
ggctgttaa

>gi568815581f:16117227_16425895|GENSCAN_predicted_peptide_5|82_aa
MQADGGTTAFPSGLEGGGRPGSALWSVYKTGEKGESKKLERNRSPAEERAAMLALHLPET
LGQFTFQSHIVTAEVEAQRDAS

>gi568815581f:16117227_16425895|GENSCAN_predicted_CDS_5|249_bp
atgcaggcggacggcgggaccacagcatttccctccggcttggagggcggaggccgaccc
gggagcgcgctctggagcgtttataagacaggagaaaagggagaaagcaaaaagttggaa
agaaacagaagtcctgcagaagagcgggctgccatgctggctttgcatcttccagagacg
cttggccagttcaccttccagagccacatcgtcacggctgaagtagaagcccagagagat
gccagttga

>gi568815581f:16117227_16425895|GENSCAN_predicted_peptide_6|322_aa
MAPATEKLRDPSSRHALASACGVSRLETLDGGQEDGSEADRGKLDFGSGLPPMESQFQGE
DRKFAPQIRVNLNYRKGTGASQPDPNRFDRDRLFNAVSRGVPEDLAGLPEYLSKTSKYLT
DSEYTEGSTGKTCLMKAVLNLKDGVNACILPLLQIDRDSGNPQPLVNAQCTDDYYRGHSA
LHIAIEKRSLQCVKLLVENGANVHARACGRFFQKGQGTCFYFGELPLSLAACTKQWDVVS
YLLENPHQPASLQATDSQGNTVLHALVMISDNSAENIALVTSMYDGLLQAGARLCPTVQL
EDIRNLQDLTPLKLAAKEGKIE

>gi568815581f:16117227_16425895|GENSCAN_predicted_CDS_6|966_bp
atggcccctgctactgagaagctccgggatcccagcagccgccacgccctggcctcagcc
tgcggggtaagtcggttggagacattagatggaggccaagaagatggctctgaggcggac
agaggaaagctggattttgggagcgggctgcctcccatggagtcacagttccagggcgag
gaccggaaattcgcccctcagataagagtcaacctcaactaccgaaagggaacaggtgcc
agtcagccggatccaaaccgatttgaccgagatcggctcttcaatgcggtctcccggggt
gtccccgaggatctggctggacttccagagtacctgagcaagaccagcaagtacctcacc
gactcggaatacacagagggctccacaggtaagacgtgcctgatgaaggctgtgctgaac
cttaaggacggagtcaatgcctgcattctgccactgctgcagatcgacagggactctggc
aatcctcagcccctggtaaatgcccagtgcacagatgactattaccgaggccacagcgct
ctgcacatcgccattgagaagaggagtctgcagtgtgtgaagctcctggtggagaatggg
gccaatgtgcatgcccgggcctgcggccgcttcttccagaagggccaagggacttgcttt
tatttcggtgagctacccctctctttggccgcttgcaccaagcagtgggatgtggtaagc
tacctcctggagaacccacaccagcccgccagcctgcaggccactgactcccagggcaac
acagtcctgcatgccctagtgatgatctcggacaactcagctgagaacattgcactggtg
accagcatgtatgatgggctcctccaagctggggcccgcctctgccctaccgtgcagctt
gaggacatccgcaacctgcaggatctcacgcctctgaagctggccgccaaggagggcaag
atcgag