GENSCAN 1.0 Date run: 4-Nov-116 Time: 19:58:14 Sequence gi568815580r:47023928_47129842 : 105915 bp : 42.08% C+G : Isochore 1 ( 0 - 43 C+G%) Parameter matrix: HumanIso.smat Predicted genes/exons: Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr.. ----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------ 1.01 Intr + 54 266 213 2 0 -6 62 171 0.305 3.09 1.02 Intr + 897 1053 157 2 1 70 44 109 0.601 3.36 1.03 Intr + 1232 1297 66 0 0 101 37 87 0.771 2.86 1.04 Term + 1337 1536 200 0 2 -11 35 210 0.290 2.38 1.05 PlyA + 1720 1725 6 -3.24 2.02 PlyA - 2445 2440 6 -0.45 2.01 Sngl - 5915 4275 1641 2 0 107 37 2064 0.991 198.01 2.00 Prom - 6241 6202 40 0.15 3.04 PlyA - 8626 8621 6 1.05 3.03 Term - 11602 9076 2527 0 1 54 37 2700 0.997 245.86 3.02 Intr - 11778 11674 105 2 0 22 78 110 0.669 1.81 3.01 Init - 12609 12509 101 0 2 79 30 95 0.713 2.58 3.00 Prom - 18258 18219 40 -5.05 4.00 Prom + 18517 18556 40 -9.75 4.01 Init + 19580 19757 178 1 1 102 105 110 0.997 13.57 4.02 Intr + 22464 22600 137 1 2 81 75 49 0.512 2.27 4.03 Intr + 26275 26368 94 0 1 99 31 47 0.712 -1.28 4.04 Intr + 28227 28329 103 1 1 65 74 70 0.361 1.61 4.05 Intr + 28953 29119 167 0 2 46 88 173 0.369 11.78 4.06 Intr + 29473 29608 136 2 1 93 43 29 0.189 -2.39 4.07 Intr + 34308 34425 118 0 1 92 71 122 0.765 10.45 4.08 Intr + 34927 34983 57 0 0 42 94 60 0.478 0.16 4.09 Intr + 35629 35727 99 0 0 111 89 118 0.980 13.59 4.10 Intr + 39045 39143 99 2 0 106 89 99 0.998 11.19 4.11 Intr + 39357 39434 78 2 0 85 94 103 0.878 9.43 4.12 Intr + 43094 43192 99 1 0 57 86 59 0.451 1.99 4.13 Intr + 44759 44993 235 1 1 -4 66 152 0.542 0.14 4.14 Intr + 45555 45673 119 1 2 131 57 86 0.922 9.06 4.15 Intr + 51350 51441 92 1 2 95 27 64 0.875 -1.13 4.16 Intr + 51684 51875 192 0 0 99 78 93 0.898 7.09 4.17 Term + 53424 53538 115 0 1 64 48 85 0.306 -0.84 4.18 PlyA + 53589 53594 6 1.05 5.00 Prom + 57497 57536 40 -4.15 5.01 Init + 66769 66900 132 0 0 79 37 118 0.939 5.99 5.02 Intr + 67199 67378 180 1 0 75 58 127 0.121 7.54 5.03 Intr + 68786 68883 98 1 2 64 38 59 0.027 -3.61 5.04 Intr + 75316 75478 163 1 1 72 76 79 0.104 4.16 5.05 Intr + 75907 75978 72 0 0 76 80 36 0.501 0.28 5.06 Intr + 76327 76429 103 0 1 94 80 115 0.973 10.13 5.07 Term + 76939 77078 140 2 2 80 47 140 0.948 6.24 5.08 PlyA + 78296 78301 6 1.05 6.04 PlyA - 79340 79335 6 1.05 6.03 Term - 84858 84755 104 1 2 89 48 98 0.913 3.36 6.02 Intr - 89113 89050 64 1 1 122 84 63 0.988 6.67 6.01 Intr - 91421 91205 217 1 1 110 95 266 0.985 27.08 Suboptimal exons with probability > 0.800 Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr.. ----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------ Predicted peptide sequence(s): Predicted coding sequence(s): >gi568815580r:47023928_47129842|GENSCAN_predicted_peptide_1|211_aa LGAAAQAVWGGRSSLPGRQAATSGCGVTAWSELGPRSSGPLGLERRSLQTAEQARFCSSG CAAAAWSVTCAVFQDKETKRSQQAPNQDCQVDASRFPMASLAQLPLFEERHDQEHCRGGE EVSASTGALPPLGSHGFVLGLQDPAEMLQDLAPTGCLKSPRKGLLWPAADIGATVWAAEF HSHLSVQMRKTEPFEVSMVSAIVSAVGGDFA >gi568815580r:47023928_47129842|GENSCAN_predicted_CDS_1|636_bp ctcggggcggcggcacaggcagtctggggtggccggtcctcgctgcccggtcgccaggcg gcgacctcgggatgtggagtcacagcctggagcgagctgggtcctcggagcagcgggcca cttggtctggaacgccggtccttgcagacagctgagcaggcccgcttctgttcctcggga tgtgcggccgcagcctggagtgtgacctgtgcggttttccaagacaaggaaacaaagaga agtcagcaggcgccaaatcaggattgtcaggtggacgcctcacggtttcccatggcaagt cttgcccagctgcccttgttcgaagaaaggcatgatcaggaacactgtcgtggtggagaa gaagtctctgcttcgactggagcactgccacctcttggtagccatggcttcgtgcttggt cttcaggatcctgccgaaatgcttcaggatcttgctcccaccggttgtttaaaatctcct cggaaaggcttgctctggcctgcagctgatattggtgccacggtttgggcagccgagttc cactctcacctttcagtccaaatgaggaaaacagaaccatttgaagtgtctatggtgtcg gctattgtttctgctgtcggcggcgatttcgcgtaa >gi568815580r:47023928_47129842|GENSCAN_predicted_peptide_2|546_aa MAAGSTTLRAVGKLQVRLATKTEPKKLEKYLQKLSALPMTADILAETGIRKTVKRLRKHQ HVGDFARDLAARWKKLVLVDRNTGPDPQDPEESASRQRFGEALQEREKAWGFPENATAPR SPSHSPEHRRTARRTPPGQQRPHPRSPSREPRAERKRPRMAPADSGPHRDPPTRTAPLPM PEGPEPAVPGEQPGRGHAHAAQGGPLLGQGCQGQPQGEAVGSHSKGHKSSRGASAQKSPP VQESQSERLQAAGADSAGPKTVPSHVFSELWDPSEAWMQANYDLLSAFEAMTSQANPEAL SAPALQEEAAFPGRRVNAKMPVYSGSRPACQLQVPTLRQQCLRVPRNNPDALGDVEGVPY SVLEPVLEGWTPDQLYRTEKDNAALARETDELWRIHCLQDFKEEKPQEHESWRELYLRLR DAREQRLRVVTTKIRSARENKPSGRQTKMICFNSVAKTPYDASRRQEKSAGAADPGNGEM EPAPKPAGSSQAPSGLGDGDGGSVSGGGSSNRHAAPADKTRKQAAKKVAPLMAKAIRDYK GRFSRR >gi568815580r:47023928_47129842|GENSCAN_predicted_CDS_2|1641_bp atggcggcagggtccactacgctgcgcgcagtggggaagctgcaggtgcgtctggccact aagacggagccgaaaaagctagagaaatatttgcagaaactctccgccttgcccatgacc gcagacatcctggcggagactggaatcagaaagacggtgaagcgcctgcggaagcaccag cacgtgggcgactttgccagagacttagcggcccggtggaagaagctggtgctcgtggac cgaaacaccgggcctgacccgcaggaccctgaggagagcgcttcccgacagcgcttcggg gaggctcttcaggagcgggaaaaggcctggggcttcccagaaaacgcgacggcccccagg agcccatctcacagccctgagcacagacggacagcacgcagaacacctccggggcaacag agacctcacccgaggtctcccagtcgcgagcccagagccgagagaaagcgccccagaatg gccccagctgattccggcccccatcgggaccctccaacgcgcaccgctcccctcccgatg cccgagggccctgagcccgctgtgcccggggagcaacccggaagaggccacgctcacgcc gctcagggcgggcctctgctgggtcaaggctgccagggccaaccccagggggaagcggtg gggagccacagcaaggggcacaaatcgtcccgcggggcttcggctcagaaatcgcctcct gtccaggaaagccagtcagagaggctgcaggcggccggcgctgattccgccgggccgaaa acggtgcccagccatgtcttctcggagctctgggacccctcagaggcctggatgcaggcc aactacgatctgctgtccgcttttgaggccatgacctcccaggcaaacccagaagcactc tccgcgccagcgctccaggaggaagctgctttccctggacgcagagtgaacgctaagatg ccggtgtactcgggctccaggcctgcctgccagctccaggtgccgacgctgcgccagcag tgcctccgggtgcctaggaacaatccggacgccctcggcgacgtggaaggggtcccctac tcggttcttgaacccgttctggaagggtggacgcccgatcagctgtaccgcacagagaaa gacaatgccgcactcgctcgagagacagatgaattatggaggattcattgcctccaggac ttcaaggaagaaaagccacaggagcacgagtcttggcgggagctgtacctgcggcttcgg gacgcccgagagcagcggctgcgagtagtgaccacgaaaatccgatccgcacgtgaaaac aaacccagcggccgacagacaaagatgatctgtttcaactctgtggccaagacgccttat gatgcttccaggaggcaagagaagtctgcaggagccgctgaccccggaaatggagagatg gagccagcccccaagcccgcaggaagcagccaggctccctccggcctcggggacggcgac ggcggcagcgtgagcggcggcggcagcagcaaccggcacgcggcgcccgcggacaaaacc cgaaaacaggctgccaagaaagtggccccgctgatggccaaggcaattcgagactacaag ggaagattctcccgacgataa >gi568815580r:47023928_47129842|GENSCAN_predicted_peptide_3|910_aa MATLDSPEERAQNKGYQKVAALQSKTERTSQEKSSPPGVDRPDCLHCADGMSTYGGGAAQ ELRGSGLEPKLQRSLQAVAPHPEEQKRACSAVCKDGRSRPSGLLLRGPSSLQAVTPHPEV AAWRPGSEDRPPQTSCPAAPKTELRPPGQRRLHSSGEMAAGSTTLHAVEKLQVRLATKTE PKKLEKYLQKLSALPMTADILAETGIRKTVKRLRKHQHVGDFARDLAARWKKLVLVDRNT RPGPQDPEESASRQRFGEALQDQEKAWGFPENATAPRSPSHSPEHRRTARRTPPGQQRPH PRSHSREPRAERKCPRIAPADSGRYRASPTRTAPLRMPEGPEPAAPGKQPGRGHTHAAQG GPLLCPGCQGQPQGKAVVSHSKGHKSSRQEKRPLCAQGDWHSPTLIREKSCGACLREETP RMPSWASARDRQPSDFKTDKEGGQAGSGQRVPALEEAPDSHQKRPQHSHSNKKRPSLDGR DPGNGTHGLSPEEKEQLSNDRETQEGKPPTAHLDRTSVSSLSEVEEVDMAEEFEQPTLSC EKYLTYDQLRKQKKKTGKSATTALGDKQRKANESKGTRESWDSAKKLPPVQESQSERLQA AGADSAGPKTVPSHVFSELWDLSEAWMQANYDPLSDSDSMTSQAKPEALSSPKFREEAAF PGRRVNAKMPVYSGSRPACQLQVPTLRQQCAQVLRNNPDALSDVGEVPYWVLEPVLEGWR PDQLYRRKKDNHALVRETDELRRNHCFQDFKEEKPQENKTWREQYLRLPDAPEQRLRVMT TNIRSARGNNPNGREAKMICFKSVAKTPYDTSRRQEKSAGDADPENGEIKPASKPAGSSH TPSSQSSSGGGRDSSSSILRWLPEKRANPCLSSSNEHAAPAAKTRKQAAKKVAPLMAKAI RDYKRRFSRR >gi568815580r:47023928_47129842|GENSCAN_predicted_CDS_3|2733_bp atggctacactggatagtcctgaagaaagagcacaaaacaaaggctaccaaaaggtggca gcactccagtcaaagacagagaggaccagtcaagagaagagcagtccacctggcgtggac cgtcccgattgtctgcattgtgctgacggcatgagtacgtatgggggcggggcagcccaa gagctaagagggtcagggctagagcccaaactgcagaggtcactccaggctgtggctcca catcccgaggaacaaaagcgggcctgctcagctgtctgcaaggacggccgttccagacca agtggcctgctgctccgaggacccagctcgctccaggctgtgactccacatcccgaggtc gctgcctggcgaccgggcagcgaggaccggccaccccagacttcctgtcccgcagcccca aagacagagctgcgaccgccgggacagcgacgcctgcacagctctggtgagatggcggca gggtccactacgctgcacgcagtggagaagctgcaggtgcgtctggccactaagacggag ccgaaaaagctagagaaatatttgcagaaactctccgccttgcccatgacggcagacatc ctggcggagactggaatcagaaagacggtgaagcgcctgcggaagcaccagcacgtgggc gactttgccagagacttagcggcccggtggaagaagctggtgctcgtggaccgaaacacc cggcctggcccacaggaccctgaggagagcgcttcccgacagcgcttcggggaggctctt caggaccaggaaaaggcctggggcttcccagaaaacgcgacggcccccaggagcccatct cacagccctgagcacagacggacagcacgcagaacacctccggggcaacagagacctcac ccgaggtctcacagtcgcgagcccagagctgagagaaagtgccccagaatagccccagct gattccggccgctatcgggcctctccaacgcgcacagctcccctccggatgcccgagggc cctgagcccgctgcgcccgggaagcaacccggaagaggccacactcacgcggctcagggc gggcctctgctgtgtccaggctgccagggccaaccccaggggaaagccgttgtgagccac agcaaggggcacaaatcgtctcgccaggaaaaacgccccttgtgtgcccagggagattgg cactcccctactttgatcagggagaaatcatgcggggcctgcttaagagaggaaacccca aggatgccctcctgggcaagtgccagggacaggcagccttcggacttcaagacagacaag gaaggggggcaagctggcagcggccagcgtgtccctgccttggaggaggctccagacagt caccagaagaggcctcagcacagtcactcgaacaagaagaggcccagtctagacggccgg gacccaggaaatgggacacacggcctgtcgcccgaggagaaagagcagctttccaacgac cgagagactcaagaggggaagccaccgactgctcatttggacagaacgtccgtgagctcc ctctctgaggtggaggaggtagatatggctgaggaattcgagcagcccactctgtcatgt gaaaaatacctcacctacgatcagttgcggaagcaaaagaaaaagactggaaaatctgcc accactgcacttggagataaacaaaggaaagcaaacgaatccaagggcactcgtgagtcc tgggattcggctaagaaattgcctcctgtccaggaaagccagtcagagaggctgcaggcg gccggcgctgattccgccgggccgaaaacggtgcccagccatgtcttctcagagctctgg gacctctcagaggcctggatgcaggccaactacgatccgctttcggattctgactccatg acctcccaggcaaagccagaagcactctcttcaccaaagttccgggaggaagctgctttc cctggacgcagagtgaatgctaagatgccggtgtactcgggctccaggcctgcctgccag ctccaggtgccgacgctgcgccagcagtgtgcccaggtgcttagaaacaatccggacgcc ctcagcgacgtgggagaggtcccctactgggttcttgaacctgttctggaagggtggagg cccgatcagctgtatcgcagaaagaaagacaatcacgcactcgttagagagacagacgaa ttacggaggaatcattgtttccaggacttcaaggaagaaaagccacaggaaaacaaaact tggagggagcagtacctgcggcttccggacgccccagagcagcggctgagagtaatgaca acgaatatccgatctgcacgtggaaacaaccccaacggcagagaggcaaagatgatctgt ttcaaatctgtggccaagacgccttatgatacttcaaggaggcaagagaagtctgcagga gacgctgaccccgaaaatggggagatcaagccagcctccaagcccgcgggaagcagccac actccctccagccagagcagcagcggcggtggcagagacagcagcagcagcatccttcgc tggctccctgagaagcgggccaacccctgcctgagcagcagcaatgagcacgcggcgccc gcggccaaaacccggaaacaggctgccaagaaagtggccccgctgatggccaaggcaatt cgagactacaagagaagattctcccgacgataa >gi568815580r:47023928_47129842|GENSCAN_predicted_peptide_4|705_aa MAESVLLKQERDQKRKIQFLGDPMQENVKGKSQKKHLLQVLESVSRVEREDRGSKREARG FIAVGAVLFFVVILPKFSSVPVRDEDRSTTKKSSHFDFALFNTRRTIFRDEFSTDNFENA VFLDKLTLIKLKLTMPEDFETQPLLPVLRPLILDSFTTEQVKNDSKEQRSRYIDTANALE QETKLGLRRFEVCDNIDLETILMEYESYYFVKFQKYPKIVKKSSDTGDLLSVLKITTKMS IGEANSSCIDNEKLLKAINPDNDQYNIKTQYRMMNDSCQNLPKINQQRPRSKTTAGKTGD TKSLNKEHPNQTFMLDFLGAKKGSKERIQQEVVDNTRLESANFGLHISRIRKDSGEENAH PRRGQIIDFQGLLTDAIKGATSELALNTFDHNPDPSERLLKPLSAFIGMNSEMRELAAVV SRDIYLHNPNIKWNDIIGLDAAKQLVKEAVVYPIRERLPEGYACPVQRWCLLMRLPLNIP NFQNKFHRSSVLYSNKPLLIGSSMYFKVHTCFTTFKRLPNALRIEVWGKRCYACTGKTLL AKAVATECKTTFFNISASTIVSKWRGDSEKLVRVLFELARYHAPSTIFLDELESVMSQRG TASGVVFRPEDPLAPGSQAAISVLLAENSRCDGLLWSQRGCPWGMSLAHSATVQGHVCTS LLRGSPRRGEHEGSLRMKTELLVQMDGLARSEDLVFVLAASNLPW >gi568815580r:47023928_47129842|GENSCAN_predicted_CDS_4|2118_bp atggcggaaagtgtgctattaaaacaagagagggaccagaagagaaagattcagtttcta ggggatccaatgcaagaaaatgtcaaagggaaatcccagaaaaagcatctattgcaggtc ttagagtcagtctctagagtagaacgggaggatagaggctccaagagggaagcaagaggg tttattgccgtaggagcagtgttattttttgttgtcatcctacctaaattttcctctgtt ccagtgcgagatgaggacagaagcacgacgaaaaaatcttctcattttgatttcgcatta tttaacacaagaaggaccatctttagagacgagttttccacagataactttgagaatgct gtcttcctagataagttgactcttataaaacttaaactcaccatgccagaggattttgag acacagcccttgcttccagtgctaaggccacttatattggacagttttacaactgaacaa gttaaaaatgacagtaaggaacaaagatcaaggtatatcgatacagcaaatgctttggag caagaaactaaactggggttacgacggtttgaagtttgtgacaacattgatcttgaaact attttgatggaatatgagagttattattttgtaaaatttcagaaataccccaaaattgtc aaaaagtcatcagacacaggagacctattatctgtcttgaaaataactacaaaaatgagt attggggaagctaatagctcatgtatagataatgaaaagcttttgaaagccatcaatcca gataatgatcaatataatataaaaacccagtataggatgatgaacgacagttgtcaaaat cttcccaagatcaatcagcagaggccccggtccaaaaccacagcggggaagacaggggac accaaatcgctcaataaggagcatcctaatcagaccttcatgctggacttcctgggggcc aagaagggcagcaaggagagaatccagcaggaggtagttgataacactcgcctggaaagt gccaacttcggcctacatatatcaagaatccgtaaagacagtggagaggaaaatgcccac ccacgaagaggccaaatcattgacttccaagggctgctcacagatgccatcaagggagca accagtgaacttgccttgaacaccttcgaccataatccagacccctcagaacgactgctg aaacctctgagtgcatttattggcatgaacagtgagatgcgagaattggcagccgtggtg agccgggacatttatctccataatccaaacataaagtggaatgacattattggacttgat gcagccaagcagttagtcaaagaagctgttgtgtatcctataagggagagacttcctgaa ggctacgcatgtcctgttcagcgttggtgtctcttaatgcgtttgcccctgaatattccc aacttccaaaacaagtttcaccgtagctctgtactttattcgaataaacctttactaatt ggttctagtatgtattttaaagttcatacctgctttacaacattcaaaagattgccaaat gctctccgtatagaagtctggggaaaacgatgttatgcatgtacaggaaagactttactg gccaaagctgtggccactgaatgtaaaacaaccttctttaacatttctgcatccaccatt gtcagcaaatggagaggggattcagaaaaactcgttcgggtgttatttgagcttgcccgc taccacgccccatccacgatcttcctggacgagctggagtcggtgatgagtcagagaggc acagcttctggagtggttttcaggcctgaagatcctctagccccaggatcccaggctgcc atatcggttctgctggctgaaaatagccgctgtgatggcctcctctggagccagaggggc tgcccctggggaatgagtcttgcccactcagccactgtgcagggccacgtctgtacttca ctcctgagaggcagtcctcgacggggagaacatgaaggaagcctgcggatgaagacagag ttactggtgcagatggatgggctggcacgctcagaagatctcgtatttgtcttagcagct tctaacctgccgtggtaa >gi568815580r:47023928_47129842|GENSCAN_predicted_peptide_5|295_aa MTRLLIDKVKVPHKENGLSRNSELGWQKVDSENGKQTSLAQVGIEPWFNSGDRTRDLGRY LRVGTGAQLIGHKALKQDVNRGSGQWVLHLLSSSGPGSSGPNSESIEETLGFPIVLLEGP SLYASQPLFLESLIVLWELDCAMLRRLEKRILVDLPSREARQAMIYHWLPPVSKSRALEL HTELEYSVLSQGVAEMLPAFGEHLNTMFSEVPKWQETEGYSGSDIKLVCREAAMRPVRKI FDALENHQSESSDLPRIQLDIVTTADFLDVLTHTKPSAKNLAQRYSDWQREFESV >gi568815580r:47023928_47129842|GENSCAN_predicted_CDS_5|888_bp atgactcgacttttgatagacaaagtgaaagttccacataaggaaaatggcctgagtaga aactcagaactaggatggcaaaaagtggattctgagaatggcaagcagaccagtttggcc caagtgggaattgaaccctggtttaacagtggagacaggacgagggacttaggaaggtac ctgagggttggcacaggggctcagctgatcgggcacaaggccttgaagcaagatgtaaac cgtggaagtggccagtgggtgctgcaccttttatccagcagtgggcctgggtccagtgga ccaaactctgagtctatagaggaaaccctggggttccccatcgtcctcctggagggtcct tcactctatgcgtcacagcctctgtttcttgaatcccttatagtcctttgggagctggac tgtgccatgttacgccgcctggagaagaggattctggtcgatctccccagccgggaggcc aggcaggccatgatctaccactggctgcctcctgtgagcaagagcagggccttggagctg cacacagagctggagtacagtgtgctgagccagggtgttgcagaaatgttgcctgctttt ggtgaacatttgaacacaatgttctctgaggttcctaaatggcaggagactgagggctac tcaggctcagatattaagctcgtctgcagggaagcagccatgcggcccgtgaggaagatc tttgatgcacttgaaaatcaccagtcagaaagcagcgacttacccaggatccagttggat atagtaaccactgccgactttctggatgtgctaactcacaccaagccctccgcaaagaat ctggctcagagatactcagactggcaaagagagttcgagtctgtctga >gi568815580r:47023928_47129842|GENSCAN_predicted_peptide_6|128_aa XLLLDGAPLIAIHKARYYKRKDGLALGPGPFVTALEYATDTKATVVGKPEKTFFLEALRG TGCEPEEAVMIGDDCRDDVGGAQDVGMLGILVKTGKYRASDEEKINPPPYLTCESFPHAV DHILQHLL >gi568815580r:47023928_47129842|GENSCAN_predicted_CDS_6|387_bp nngttactcctggatggagcacctctgatagcaatccacaaagccaggtattacaagagg aaagatggcttagccctggggcctggaccatttgtgactgctttagagtatgccacagat accaaagccacagtcgtggggaaaccagagaagacgttctttttggaagcattgcggggc actggctgtgaacctgaggaggctgtcatgataggagatgattgcagggatgatgttggt ggggctcaagatgtcggcatgctgggcatcttagtaaagactgggaaatatcgagcatca gatgaagaaaaaattaatccacctccttacttaacttgtgagagtttccctcatgctgtg gaccacattctgcagcacctattgtga