GENSCAN 1.0	Date run:  6-Nov-116	Time: 23:52:15

Sequence gi568815579f:29712688_29923774 : 211087 bp : 49.76% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Intr +   2949   3095  147  1  0   96   47    73 0.330   4.21
 1.02 Intr +  12233  12391  159  0  0   83  116     0 0.236   2.26
 1.03 Intr +  15464  15553   90  0  0   76   61    47 0.255   0.77
 1.04 Intr +  15987  16125  139  1  1  103   53    51 0.117   2.62
 1.05 Intr +  22288  22312   25  1  1   71  111    14 0.027   0.03
 1.06 Intr +  26691  26797  107  2  2    6   72   128 0.263   2.01
 1.07 Intr +  28380  28450   71  0  2   49   77    51 0.832  -1.07
 1.08 Term +  28636  28751  116  2  2   95   53    76 0.904   3.53
 1.09 PlyA +  29679  29684    6                               1.05

 2.00 Prom +  40978  41017   40                              -5.36
 2.01 Init +  62191  62259   69  0  0   78   81    52 0.362   4.56
 2.02 Intr +  63357  63433   77  2  2   98   86    10 0.213   0.11
 2.03 Intr +  68886  69256  371  0  2   84   45   152 0.650   5.25
 2.04 Term +  78852  78985  134  1  2  115   55    52 0.742   2.85
 2.05 PlyA +  81635  81640    6                               1.05

 3.00 Prom +  83301  83340   40                              -3.16
 3.01 Init +  85382  85428   47  1  2   69   66    50 0.176   1.06
 3.02 Intr +  99306  99465  160  0  1   11  105    95 0.361   3.49
 3.03 Intr +  99845  99891   47  1  2  106  101    27 0.749   3.01
 3.04 Intr + 100002 100089   88  0  1   62   62   139 0.949   8.67
 3.05 Intr + 100291 100350   60  0  0   29   96    98 0.845   3.63
 3.06 Intr + 104450 104595  146  1  2  100   78   117 0.964  10.98
 3.07 Intr + 104719 104854  136  1  1   91   83   -19 0.876  -1.53
 3.08 Intr + 108015 108161  147  2  0   69   84    33 0.702   1.43
 3.09 Intr + 109035 109130   96  2  0  109   98    28 0.981   6.11
 3.10 Intr + 109309 109443  135  0  0  111  107    36 0.993   8.56
 3.11 Intr + 109553 109664  112  1  1   95  111    48 0.994   7.75
 3.12 Intr + 109759 109916  158  2  2   85   65    91 0.958   6.23
 3.13 Intr + 110968 111055   88  0  1   76   95     8 0.352  -0.16
 3.14 Intr + 111432 111569  138  1  0   87   78    29 0.292   2.24
 3.15 Term + 125144 125190   47  0  2  118   48    39 0.005   0.27
 3.16 PlyA + 125347 125352    6                              -0.45

 4.12 PlyA - 125643 125638    6                               1.05
 4.11 Term - 127387 127308   80  2  2   93   48    52 0.370  -0.37
 4.10 Intr - 127816 127507  310  1  1   31   37   163 0.484   1.39
 4.09 Intr - 129751 129638  114  1  0  103   60    21 0.657   1.44
 4.08 Intr - 132995 132830  166  1  1  -22   96   151 0.041   4.86
 4.07 Intr - 149243 149132  112  0  1   54   25   138 0.017   3.54
 4.06 Intr - 161011 160942   70  1  1   80    3    43 0.085  -6.25
 4.05 Intr - 161419 161321   99  1  0  112   74    30 0.517   4.31
 4.04 Intr - 162013 161830  184  0  1   58   82    81 0.331   4.29
 4.03 Intr - 163904 163753  152  2  2   96   49    75 0.166   3.36
 4.02 Intr - 170470 170343  128  2  2   78   60    56 0.038   2.20
 4.01 Init - 189182 188939  244  2  1   72   53   158 0.043   8.70
 4.00 Prom - 191099 191060   40                              -5.16

 5.00 Prom + 208006 208045   40                              -3.76
 5.01 Sngl + 208495 208965  471  0  0   59   48   547 0.961  43.92
 5.02 PlyA + 209468 209473    6                               1.05


Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term +  69682  69773   92  2  2   97   45    70 0.914   1.48
S.002 Init - 132925 132830   96  1  0   60   96    78 0.802   6.11


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815579f:29712688_29923774|GENSCAN_predicted_peptide_1|284_aa
XWAQKRAQGHLEVKGAASVFGECVGRSQISSVPEPALEPLGLGVAKGEAANSPETLRLFW
LPPLTVAINRTSTLSLSYACFSYSESTRFPRRRDSGATMQLEEAVQCLHVPDSPFDVYSP
IVIHLNVYSPLQAPPALPLFSVPGPNELGAPDLLGDFPKVSITQGVGATDFDCWVYSGQR
GFLADLNMPVSYGPMGAGHREGAFDAVEQGGGIVHAKWPLKNWTFDTLTPTGFPRACMAS
LTIHIHGGELLTYRGRAASSSDSLALSEGSGICSHERNVCRVTP

>gi568815579f:29712688_29923774|GENSCAN_predicted_CDS_1|855_bp
ncctgggcacagaagagagcacaggggcatctggaggtcaagggtgctgcgtcagtattt
ggtgaatgtgtgggccggagccagatttcctctgttccagagcctgctctggagcctctg
ggtctgggggttgcaaaaggagaagcagctaactccccggaaaccctgcgtttattctgg
ctgccccctttgactgtggcaataaatagaacttcaaccctctcactttcttatgcctgc
ttttcttacagtgaaagcaccagatttccgcgtaggagggactcgggggcaacgatgcaa
ttggaagaggctgtgcaatgccttcatgtccctgattcaccttttgacgtctacagcccg
attgtaatacacttaaatgtgtattctccactccaagctcctccagccctccctctgttc
agtgtgcctggcccaaatgaactgggagctccagaccttctcggggacttccccaaagtc
tctataacacaaggtgttggtgccacagactttgactgttgggtctacagtggccagaga
ggctttttggcagaccttaacatgcctgtctcctatggacctatgggagctggacacagg
gaaggagcctttgatgccgtggaacaaggtggaggaattgtccatgcgaagtggcccctg
aagaactggacttttgacacgcttacccccaccggctttccccgcgcctgcatggcctct
ctaaccatccacatccatggaggtgagctcctcacgtacaggggtcgcgctgcctcctcc
tctgactccctggctctgagcgaaggctctggcatctgtagccatgagaggaatgtttgc
cgagtgaccccatga

>gi568815579f:29712688_29923774|GENSCAN_predicted_peptide_2|216_aa
MSLPAGKVPSGKGALLACYSPQKMERRRQFGEETSLSTISPGSNIPGERHTVFVLEISLV
APCADWQTGTWAHTRAAHTQPQPPHWHGSSGGLCRCRATEMEAGRVESQLAPVPSLPEEL
HTAVPGGIGDAFQHWRAGTEHGTGKDKGLGWVAPGAIGAWLVAPEHQDVGRLVHQVLKTS
VPSSNRVLAGGLEDCWGLAAAVSGAEARWPDISFRC

>gi568815579f:29712688_29923774|GENSCAN_predicted_CDS_2|651_bp
atgtccctgccagctggcaaggtgccctcaggaaaaggtgcccttctggcctgctacagt
ccccaaaagatggaaaggagaaggcagtttggggaagaaaccagcctcagcaccatctcc
cctgggtctaacattccaggagaaaggcatacggtctttgtgctggaaatttccctcgtg
gctccatgcgcggactggcagacgggcacgtgggcccacacgcgggcagcacacacgcag
ccgcagccccctcattggcatggctctagtgggggcctctgcaggtgccgggctacagag
atggaagcggggagagtggaatcacagttggcacctgtgccgagcttgcctgaggagctg
cacactgcggtgcctggcggaatcggagatgctttccagcactggagggcagggacggag
cacgggaccgggaaggacaagggcttgggttgggtcgcccctggggccattggggcctgg
cttgtggcacccgagcaccaggatgtgggaaggctggtccatcaggttctaaagacctct
gttccttcttccaaccgcgtcctggctggtggccttgaggactgctggggtctcgctgcg
gctgtgtctggagctgaagcgagatggcctgacatcagtttccgttgttga

>gi568815579f:29712688_29923774|GENSCAN_predicted_peptide_3|534_aa
MRVGQPDTTGPGAEDRSSRRGRQRGVGGRRGSRHRRALGPPTPGAAAATAVAAAACRDWS
APSAADKTLASGRSSPIMPRERRERDAKERDTMKEDGGAEFSARSRKRKANVTVDPDEEM
AKIDRTARDQCGSQPWDNNAVCADPCSLIPTPDKEDDDRVYPNSTCKPRIIAPSRGSPLP
VLSWANREEVWKIMLNKEKTYLRDQHFLEQHPLLQPKMRAILLDWLMEVCEVYKLHRETF
YLAQDFFDRYMATQENVVKTLLQLIGISSLFIAAKLEEIYPPKLHQFAYVTDGACSGDEI
LTMELMIMKALKWRLSPLTIVSWLNVYMQVAYLNDLHEVLLPQYPQQIFIQIAELLDLCV
LDVDCLEFPYGILAASALYHFSSSELMQKVSGYQWCDIENCVKWMVPFAMVIRETGSSKL
KHFRGVADEDAHNIQTHRDSLDLLDKARAKKAMLSEQNRASPLPSGLLTPPQSGVLGSVV
PSGAGGCGQALCRAHSQLGRGLPSPHYQLTVYNAFDELFCLLVIPEVTFGPQSL

>gi568815579f:29712688_29923774|GENSCAN_predicted_CDS_3|1605_bp
atgagagtgggacagccagacaccacgggtcctggagctgaggacaggagcagccggcgc
ggccgccagcgcggtgtagggggcaggcgcggatcccgccaccgccgcgcgctcggcccg
ccgactcccggcgccgccgccgccactgccgtcgccgccgccgcctgccgggactggagc
gcgccgtccgccgcggacaagaccctggcctcaggccggagcagccccatcatgccgagg
gagcgcagggagcgggatgcgaaggagcgggacaccatgaaggaggacggcggcgcggag
ttctcggctcgctccaggaagaggaaggcaaacgtgaccgttgatccagatgaagaaatg
gccaaaatcgacaggacggcgagggaccagtgtgggagccagccttgggacaataatgca
gtctgtgcagacccctgctccctgatccccacacctgacaaagaagatgatgaccgggtt
tacccaaactcaacgtgcaagcctcggattattgcaccatccagaggctccccgctgcct
gtactgagctgggcaaatagagaggaagtctggaaaatcatgttaaacaaggaaaagaca
tacttaagggatcagcactttcttgagcaacaccctcttctgcagccaaaaatgcgagca
attcttctggattggttaatggaggtgtgtgaagtctataaacttcacagggagaccttt
tacttggcacaagatttctttgaccggtatatggcgacacaagaaaatgttgtaaaaact
cttttacagcttattgggatttcatctttatttattgcagccaaacttgaggaaatctat
cctccaaagttgcaccagtttgcgtatgtgacagatggagcttgttcaggagatgaaatt
ctcaccatggaattaatgattatgaaggcccttaagtggcgtttaagtcccctgactatt
gtgtcctggctgaatgtatacatgcaggttgcatatctaaatgacttacatgaagtgcta
ctgccgcagtatccccagcaaatctttatacagattgcagagctgttggatctctgtgtc
ctggatgttgactgccttgaatttccttatggtatacttgctgcttcggccttgtatcat
ttctcgtcatctgaattgatgcaaaaggtttcagggtatcagtggtgcgacatagagaac
tgtgtcaagtggatggttccatttgccatggttataagggagacggggagctcaaaactg
aagcacttcaggggcgtcgctgatgaagatgcacacaacatacagacccacagagacagc
ttggatttgctggacaaagcccgagcaaagaaagccatgttgtctgaacaaaatagggct
tctcctctccccagtgggctcctcaccccgccacagagcggtgttctgggctccgttgta
ccaagtggagcaggtggttgcgggcaagcgttgtgcagagcccatagccagctgggcagg
gggctgccctctccacattatcagttgacagtgtacaatgcctttgatgaactgttttgc
ctcctggtgatccctgaggtgacctttggccctcagtccctctaa

>gi568815579f:29712688_29923774|GENSCAN_predicted_peptide_4|552_aa
MKRSRCRDRPQPPPPDRREDAVQRAAELSQSLPPRRRAPPGRQRLEERTGPAGPEGKEQP
PALASQSAEIAASARLPPRLGTPGPPGSWEPQRDGSRGQPLWMDPLLGILNSKHQPHICK
QSLQQHNNGVECVGAPLPLDHLGEVNGTHLASSAAEKWGGYIKRKTERRVNERRRKQALP
IRQEDMGGDLKVWGQLWESLHTGRELTNLLELRGKTPGNNDVGGTVSRVAEPSVHQDPQP
ASSEVNSVTVCKYGCRQIAASCPQPRASGMPGRRHQMAADALRSSGREGAGPGISRKDSV
SLELLGLQLEEHLQDNEANIMKSKAQEEVGRAVEHPAGGEYGAQSSGLRGGVKMWLSGVQ
TASMFRKHVENSLATVRTIRIIRMQGQGPEGWTLRCWFKEEENGNPNTGRSKRHQRGKLG
ALGAVTPRLSPGAEVAVLIISTAAECASFQQLFGVNVHVEPSTRASLLASATLLSVGSTK
DARRGLDHQLCKSAPSVWEEVVWRAESPVGVEEKKEEKKVGSAGDGGHPRAPCMEIPELP
ELQVEVAELGPH

>gi568815579f:29712688_29923774|GENSCAN_predicted_CDS_4|1659_bp
atgaagcggagccgctgccgcgaccgaccgcagccgccgccgcccgaccgccgggaggat
gcagttcagcgggcagcggagctgtctcagtctttgccgccgcgccggcgagcgccgccc
gggaggcagcggctggaggagcggacgggccccgcggggcccgagggcaaggagcagccg
cctgccttggcctcccaaagtgccgagattgcagcctctgcccggctgccaccccgtctg
ggaactccaggccctcctggctcctgggagccacagagagatggctcccgtgggcagccg
ctgtggatggatcctttattgggcatcttgaattccaagcaccagccccacatttgcaag
cagagcctccagcaacacaacaacggtgtagagtgcgtgggggccccactgccactggac
cacttgggagaggtgaatggtactcacctcgcctcttctgcagcagagaagtggggagga
tatatcaagaggaaaacagagaggagagtcaatgagagacggaggaaacaggccttgcct
ataaggcaggaggatatggggggagacctcaaggtttgggggcagctgtgggagtctctg
cacactggcagagaattaactaacctcttggagcttagagggaaaaccccggggaacaat
gatgtcgggggcacggtcagcagagtggccgagccatctgtacaccaggacccgcagcca
gccagctctgaggttaattctgtgacagtgtgcaaatacggctgccgccaaatcgcagcc
tcgtgcccgcagcctcgcgcctcagggatgcccgggcgccgccaccagatggcagcagac
gctttgcgatcgagcggccgggagggcgcggggccggggatttctcgcaaggacagtgta
agcctggagctgctggggctacaactggaagaacacttgcaggataacgaagccaatata
atgaaaagcaaagcccaggaagaggtgggaagggccgtggaacacccggccggcggggaa
tacggagctcagagcagcgggctgcgcgggggcgtaaaaatgtggctgtcaggggtccaa
acagcatcaatgttcagaaagcacgtggaaaacagtttagctactgttagaactatcagg
atcatccgcatgcagggtcagggtcctgaaggttggaccttacggtgttggtttaaggaa
gaggaaaatggaaatccaaacacagggagatctaagagacaccagagagggaaactaggg
gccttaggggctgtcacaccgagactttctccaggagctgaggtggcagtgctgataatt
tctacagcagcagagtgtgccagtttccagcagctgttcggggtgaatgtgcatgtggag
ccttccaccagagcatcgctactcgcctcggcaactttactcagtgttggatccaccaag
gatgccaggaggggcctcgaccaccagctgtgcaaatcagcccctagtgtctgggaggag
gtggtctggagggcagaaagcccagtgggggttgaggagaagaaggaagagaagaaggtt
ggcagtgcgggagatgggggtcaccctcgagccccctgcatggaaattccagaactgcct
gagttgcaggtggaggtggctgagttgggaccccattag

>gi568815579f:29712688_29923774|GENSCAN_predicted_peptide_5|156_aa
MVNPTKFFNEPWGRISIQLFADKFPKTAENVCALSIGEKGFGYKGSCFHRIIPGFMCHGG
DFTHHNGSGGKYIYGEKFDDENFILKQTGSGILSKENAGPNTNGSQFFICSAKSEWLDGE
HVFFGKVKEGMNIVEAMEGFGSRNGKTSKKITIADC

>gi568815579f:29712688_29923774|GENSCAN_predicted_CDS_5|471_bp
atggtcaaccccaccaagttcttcaatgagccctggggccgcatctccatccagctgttt
gcagacaagtttccaaagacagcagaaaatgtttgtgctctgagcattggagagaaagga
tttggttataagggttcctgctttcacagaattattccggggtttatgtgtcacggtggt
gacttcacacaccataatggcagtggtggcaagtacatctatggggagaaatttgatgat
gagaacttcatcctgaagcagacaggttctggcatcttgtccaaggaaaatgctggaccc
aacacaaacggttcccagtttttcatctgcagtgccaagagtgagtggttggatggtgag
catgtgttctttggcaaggtgaaagaaggcatgaatattgtggaggccatggagggtttt
gggtccaggaatggcaagaccagcaagaagatcaccattgctgactgttga