GENSCAN 1.0	Date run:  5-Nov-116	Time: 13:56:09

Sequence gi568815578r:52052149_52291636 : 239488 bp : 43.06% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.00 Prom +    225    264   40                              -1.26
 1.01 Init +   3033   3035    3  2  0   98   95     0 0.185   1.70
 1.02 Intr +   9095   9150   56  1  2   70  100    45 0.033   1.68
 1.03 Term +  29886  29955   70  0  1  104   48    62 0.206   1.21
 1.04 PlyA +  31200  31205    6                               1.05

 2.07 PlyA -  31886  31881    6                               1.05
 2.06 Term -  33118  32409  710  2  2   49   36   928 0.998  77.37
 2.05 Intr -  36608  36244  365  1  2   58  100   396 0.754  32.63
 2.04 Intr -  40286  40157  130  0  1   65   68    55 0.267   0.95
 2.03 Intr -  45287  45225   63  0  0   87   77    35 0.606   0.99
 2.02 Intr -  46439  46290  150  0  0   34  110   122 0.811   9.13
 2.01 Init -  53089  52984  106  1  1   88  100   124 0.994  14.01
 2.00 Prom -  53927  53888   40                              -6.66

 3.03 PlyA -  55238  55233    6                               1.05
 3.02 Term -  58894  58531  364  0  1   55   37   449 0.887  30.54
 3.01 Init -  96083  96055   29  2  2  101  121   -22 0.025   1.62
 3.00 Prom -  97076  97037   40                              -3.06

 4.07 PlyA -  97517  97512    6                               1.05
 4.06 Term - 101280  99998 1283  1  2   80   39  1469 0.996 132.96
 4.05 Intr - 108226 107975  252  2  0   52  100   419 0.999  36.91
 4.04 Intr - 112609 112547   63  2  0  131  114    68 0.999  12.39
 4.03 Intr - 113871 113716  156  1  0   44  103    76 0.788   4.68
 4.02 Intr - 134917 134684  234  2  0   27   92   337 0.885  25.66
 4.01 Init - 139488 139443   46  0  1   98  106   112 0.910  14.85
 4.00 Prom - 139580 139541   40                              -5.66

 5.06 PlyA - 140852 140847    6                               1.05
 5.05 Term - 148651 148529  123  1  0   48   32    96 0.404  -1.62
 5.04 Intr - 148851 148783   69  0  0   64  100    20 0.223   0.18
 5.03 Intr - 158532 158413  120  0  0   72   94   142 0.913  13.89
 5.02 Intr - 166164 166049  116  1  2   31   71    73 0.039   0.07
 5.01 Init - 169700 169289  412  2  1   60   -8   220 0.033   6.28
 5.00 Prom - 189367 189328   40                              -3.06

 6.00 Prom + 192381 192420   40                              -5.26
 6.01 Init + 196643 196703   61  1  1   98   79    37 0.844   5.21
 6.02 Term + 196941 197167  227  1  2   84   36   103 0.934   1.64
 6.03 PlyA + 197874 197879    6                               1.05

 7.03 PlyA - 198166 198161    6                               1.05
 7.02 Term - 200551 200384  168  1  0   39   44   133 0.702   1.88
 7.01 Init - 234224 234195   30  2  0   99   72    28 0.313   2.04
 7.00 Prom - 237456 237417   40                              -1.86


Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Sngl +  80363  80626  264  1  0   51   41   182 0.973   5.00


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815578r:52052149_52291636|GENSCAN_predicted_peptide_1|42_aa
MLFPDSQWKPWPKSFSDILSCITVAELEPLCYNSSGNRADNK

>gi568815578r:52052149_52291636|GENSCAN_predicted_CDS_1|129_bp
atgcttttccctgacagccagtggaagccatggcccaagtcatttagtgacatcttaagc
tgcattacagtggccgagttggaacctctgtgctacaacagcagtggcaacagagctgat
aacaagtag

>gi568815578r:52052149_52291636|GENSCAN_predicted_peptide_2|507_aa
MSRRKQAKPQHLNSEEPRPARRECAEVAPQVAGEPASELDDDVPKANCLSTESTDTPKAP
VITLPSEAREQMATLGERTFNCCYPGCHFKTVHGMKDLDRHLRIHTVPFCFSKVYWNGFQ
LGMISPPKGTMSGDIFDCYNWRRKGSTGICIWTGGGGTPICPGYHLGQIFVAILTKKPLT
LTPYVFEGDKPHKCEFCDKCFSRKDNLTMHMRCHTSVKPHKCHLCDYAAVDSSSLKKHLR
IHSDERPYKCQLCPYASRNSSQLTVHLRSHTGDTPFQCWLCSAKFKISSDLKRHMIVHSG
EKPFKCEFCDVRCTMKANLKSHIRIKHTFKCLHCAFQGRDRADLLEHSRLHQADHPEKCP
ECSYSCSSAAALRVHSRVHCKDRPFKCDFCSFDTKRPSSLAKHVDKVHRDEAKTENRAPL
GKEGLREGSSQHVAKIVTQRAFRCETCGASFVRDDSLRCHKKQHSDQSENKNSDLVTFPP
ESGASGQLSTLVSVGQLEAPLEPSQDL

>gi568815578r:52052149_52291636|GENSCAN_predicted_CDS_2|1524_bp
atgtcgcggcgcaagcaggccaagccccagcacctcaactccgaggagccgcggcctgcg
cgccgggagtgtgcggaggtggccccgcaggtggcgggggagccggcttcagaacttgat
gatgatgttccaaaagcaaactgcctctccactgaaagcactgacactccgaaggcccct
gtcatcactcttccctcagaggcaagggaacaaatggccacccttggagagaggacgttc
aactgttgctacccaggttgccacttcaaaactgtccatggcatgaaagacttggaccgc
catctcagaatccacacggtccccttctgcttttccaaagtctattggaatggttttcaa
ctaggtatgatttcaccccccaagggaacaatgtctggagacatcttcgattgttacaac
tggagaagaaagggttctactggcatctgtatttggacaggaggaggcggcacacccata
tgcccaggctatcatcttggtcaaatctttgtagccatcttgaccaaaaaacctttaact
ttgactccttatgtgtttgaaggagacaaaccgcacaagtgtgagttctgtgacaagtgc
ttcagccggaaggacaacctgaccatgcacatgcggtgccacaccagtgtgaagccacac
aagtgtcacctgtgtgactacgctgccgtggacagcagtagcctcaagaagcacctgcgg
atccactctgatgagcggccgtacaaatgccagctctgcccctatgccagccgcaactcc
agccagctcaccgtccacctgcgatctcacacgggggatacccccttccagtgctggctc
tgtagcgccaagttcaaaatcagctcggacttgaaaaggcacatgatcgtgcactcgggg
gagaagcctttcaagtgcgagttctgcgacgtccgctgcaccatgaaggcgaatctcaaa
tcgcacatccgcatcaagcacaccttcaaatgtctgcactgtgccttccagggccgggac
cgggctgacctcctggagcacagccggctgcaccaggccgaccacccggagaagtgtcca
gagtgcagctactcctgctccagcgcggccgccctgcgcgtgcacagcagagtccactgt
aaggaccgtcccttcaagtgtgacttctgcagcttcgacacgaagcggcccagcagcctg
gccaagcacgtcgacaaggtgcacagggacgaggccaagacggagaaccgggcccctctg
ggcaaggaagggctcagagagggcagctcccagcacgtggccaagatcgtgacgcagagg
gccttccgctgtgagacctgcggcgcctccttcgtcagggatgactctctgagatgccac
aagaagcagcacagtgatcagagtgagaacaagaactcagacttggtcaccttcccaccg
gaaagcggtgcctcgggacagctcagcaccctggtctccgtggggcagctcgaggctccc
ctagagcccagccaagacctctag

>gi568815578r:52052149_52291636|GENSCAN_predicted_peptide_3|130_aa
MTYLIILALSSGLHTKRALPLDTVTFYKVIPKSRFVLVKFNTQYRYGEKQDEFRRLAENS
ASSDDLLVAEVGISDYGDKLNMELSEKYKLLKESYPVFYLSREGDFENPVPCTGAVKVGA
IQRWLKGQGV

>gi568815578r:52052149_52291636|GENSCAN_predicted_CDS_3|393_bp
atgacatatttgattatactagcattaagcagcggcctgcacaccaagcgcgcccttccc
ctggatacggtcactttctacaaggtcattcccaaaagcaggttcgtcttggtgaagttc
aacacccagtaccgctacggtgagaagcaggatgagttcaggcgtcttgctgaaaactcg
gcttccagcgatgatctcttggtggcagaggtggggatctcagattatggtgacaagctg
aacatggagctgagtgagaaatacaagctgctcaaagagagctacccagtcttctacctc
tcccgggagggggactttgagaacccagtcccatgtactggggcagttaaggttggagcc
atccagcgctggctgaaggggcaaggggtctag

>gi568815578r:52052149_52291636|GENSCAN_predicted_peptide_4|677_aa
MNASSEGESFAGSVQSGTTVLVELTPDIHICGICKQQFNNLDAFVAHKQSGCQLTGTSAA
APSTVQFVSEETVPATQTQTTTRTITSETQTITAPEFVFEHGYQTYLPTESNENQTATVI
SLPAKSRTKKPTTPPAQKRLNCCYPGCQFKTAYGMKDMERHLKIHTGDKPHKCEVCGKCF
SRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSS
QLTVHLRSHTGDAPFQCWLCSAKFKISSDLKRHMRVHSGEKPFKCEFCNVRCTMKGNLKS
HIRIKHSGNNFKCPHCDFLGDSKATLRKHSRVHQSEHPEKCSECSYSCSSKAALRIHERI
HCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGDMVKTEALERKDTGRQSSRQVAKLDAKKS
FHCDICDASFMREDSLRSHKRQHSEYSESKNSDVTVLQFQIDPSKQPATPLTVGHLQVPL
QPSQVPQFSEGRVKIIVGHQVPQANTIVQAAAAAVNIVPPALVAQNPEELPGNSRLQILR
QVSLIAPPQSSRCPSEAGAMTQPAVLLTTHEQTDGATLHQTLIPTASGGPQEGSGNQTFI
TSSGITCTDFEGLNALIQEGTAEVTVVSDGGQNIAVATTAPPVFSSSSQQELPKQTYSII
QGAAHPALLCPADSIPD

>gi568815578r:52052149_52291636|GENSCAN_predicted_CDS_4|2034_bp
atgaacgcgagcagcgagggcgagagcttcgcgggctcggtgcaaagtggcacaacggtg
ctggtggagctgactcccgacatccatatctgcggcatctgcaagcagcagtttaacaac
ctggatgcctttgtagctcacaagcaaagtggctgccagctgacaggcacatccgcagca
gcccccagcacggtccagtttgtatcggaggaaacagtgcctgccacccagactcagacc
accaccagaaccatcacctcggagacccagacaatcacagctccagaatttgtttttgaa
catggctatcaaacttacctgcccacggaaagtaatgaaaaccagacagccactgtcatc
tctctccctgccaagtcacgcaccaaaaagcccacaacaccacctgctcagaaaaggctt
aactgttgctatccaggttgccaattcaagactgcttatggcatgaaggacatggagcgg
catttaaaaattcacacgggagacaaaccccataagtgtgaagtctgtggcaagtgcttt
agccggaaagacaagctgaaaactcacatgcggtgccacacgggcgtgaagccctacaag
tgtaagacgtgtgactacgccgctgccgacagcagcagcctcaacaagcacctgaggatc
cactcggacgagcggcccttcaaatgccagatctgcccctacgccagccgcaactccagc
cagctcactgtccacctgcgatcccacacgggggacgcccccttccagtgctggctctgt
agcgccaagttcaaaatcagctcggacttgaaaaggcacatgcgggtgcactcgggggag
aagcctttcaagtgcgagttctgcaatgtccgctgcaccatgaaggggaacctcaagtcg
cacatccgtatcaagcacagcgggaataacttcaagtgtcctcattgcgacttcctgggt
gacagcaaagccaccctccggaagcacagccgcgtgcaccagtcggagcatcctgagaag
tgctcggaatgcagctactcctgctccagcaaggccgccctgcgcatccacgagcgtatc
cactgcaccgaccgccctttcaagtgcaactactgcagcttcgacaccaaacagcccagc
aacctgagcaagcacatgaagaagttccatggggacatggttaagactgaggctctagag
aggaaggacaccggcaggcagagcagccggcaggtggccaagctggatgccaagaagagt
ttccactgcgatatatgcgatgcctccttcatgcgggaggactcgctccgcagccacaag
agacagcacagtgagtacagtgagagtaagaactcggacgtgaccgttctccagtttcag
atcgaccccagcaagcagcccgccacgcccctcactgtgggacacctccaggtgcccctc
cagcccagccaagtgccccagttcagcgagggaagagtcaaaatcatcgttgggcatcag
gtgccccaggcgaacaccatcgtccaggctgccgccgctgcagtgaacatcgtcccgcct
gccttggtggcccagaacccagaggaactcccagggaacagccggctgcagatcctgcgc
caggtcagtctgatcgccccccctcagtcctcgcggtgtccgagcgaggcgggcgcaatg
acccagccggctgtcctgctgaccacccacgagcagacggacggagccactctgcaccag
actctcatccccacggcctcaggtggcccccaggaaggctctggcaatcaaactttcatt
accagttcgggtattacttgcactgactttgaaggcctaaacgccttgattcaggagggg
acagcagaagtgacagtggtgagcgatggaggccagaacatcgcagtggccaccacagcg
ccaccggtcttctcctcctcttcccagcaagaactacccaagcagacctactccatcatt
caaggggcagcccatccagctttgctctgtcccgccgactccattccagattag

>gi568815578r:52052149_52291636|GENSCAN_predicted_peptide_5|279_aa
MWESLGFPRGLLNGFDQNAVSDMDKEVQAEVVSDGDEEVVRNWSKGHSCYALAKRLVAFC
PCPRDLWNFELERNDLRLELMFKMEAEHKSLENLPDDAIEKKNPFSGEKFKLAAEICKNN
KEPNVTRQYNGENVFKACTDSTTMHSQQYLYEKSRNQSRCHSTPEKLKAKNATLKQTQSP
GARRLAPALCVIKTAEAEESWPEDTYPPKTKREAVWGRWQGERQREEVVFSGTTVTRQKE
ARSPQNPGYKKQGSASLTNSRIKGRITEQQPLDQTTSLR

>gi568815578r:52052149_52291636|GENSCAN_predicted_CDS_5|840_bp
atgtgggaaagtttgggatttcctagaggcttgttgaatggttttgaccaaaatgctgtt
agtgacatggacaaggaagtccaggctgaggtggtctcagatggagatgaggaagttgtt
aggaactggagtaaaggtcactcttgctatgctttagcaaagagactggtggcattttgc
ccctgccctagagatctgtggaactttgaacttgagagaaatgatctgagattggaactt
atgtttaaaatggaagcagagcataaaagtttggaaaatttgcctgatgacgcaatagaa
aagaaaaacccattttctggagagaaattcaagctggctgcagaaatttgcaaaaataac
aaggagccaaatgttactcgccaatacaatggagaaaatgtcttcaaggcatgtactgac
tcaacaacaatgcacagtcaacaatacctttatgagaaatctagaaaccaatccagatgt
cacagtaccccagagaagctcaaagccaagaatgccacactgaaacaaacccagtcgcct
ggcgcaagacgacttgcgccagcactgtgcgtcatcaagacagcagaagcggaagagagc
tggccggaagacacgtacccgccgaagaccaagagagaggccgtctggggaaggtggcag
ggagagagacaaagggaggaggtggtgttttcagggaccacagtcacccggcagaaggaa
gctagaagcccccagaaccctggatacaagaaacaagggtcagcgtccctgacaaatagc
agaatcaagggaagaatcacagagcaacagcctctggaccagaccaccagccttcgataa

>gi568815578r:52052149_52291636|GENSCAN_predicted_peptide_6|95_aa
MEDVPFAFCHDCKGFPAMCNILNQLRENRKSQRDGDKNIIFITDKSFIGGCSLREYPHGF
IIAHPGKSYACGRLLPQRLLGSGAEKKGSKLQIAF

>gi568815578r:52052149_52291636|GENSCAN_predicted_CDS_6|288_bp
atggaagatgtgccttttgccttctgccatgattgtaagggcttcccagccatgtgtaac
attttgaatcaattgagagagaaccgcaaaagtcagagagatggtgataaaaacatcatc
ttcattacggataaaagttttatcggaggatgtagcttacgagagtatccacatgggttc
attatagcccacccaggcaaaagttacgcttgtggaagattgttgcctcaaagattgctt
ggttctggggcagagaagaaagggagcaaattgcaaatagccttttag

>gi568815578r:52052149_52291636|GENSCAN_predicted_peptide_7|65_aa
MNKREHEGNKSNKCLQHGIQEKYRFTFTNKMVEFDSLSLETASMEQKWECDFSVVIQTSP
GMMPA

>gi568815578r:52052149_52291636|GENSCAN_predicted_CDS_7|198_bp
atgaacaagagggagcatgaaggaaacaagtccaacaagtgtttacagcacgggatccag
gagaagtacagattcacattcactaacaagatggtagagtttgactccctgtctttggaa
acagccagcatggaacagaagtgggaatgtgatttctcagtagtcatacagacgagccct
ggaatgatgccggcctga