GENSCAN 1.0	Date run:  8-Nov-116	Time: 04:48:43

Sequence gi568815578r:504594_710237 : 205644 bp : 47.98% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.03 Intr -    636    525  112  2  1  115  113   129 0.902  18.48
 1.02 Intr -  38362  38337   26  1  2   93   64    14 0.035  -3.68
 1.01 Init -  39297  39079  219  0  0  101   82   212 0.958  18.53
 1.00 Prom -  39632  39593   40                              -3.96

 2.05 PlyA -  39815  39810    6                              -0.45
 2.04 Term -  41664  41651   14  1  2  110   54     4 0.029  -2.44
 2.03 Intr -  54843  54742  102  1  0   54   30   143 0.459   5.25
 2.02 Intr -  71959  71879   81  2  0   82   92    27 0.165   2.11
 2.01 Init -  74577  74445  133  0  1   78   47    77 0.127   2.90
 2.00 Prom -  78858  78819   40                              -3.56

 3.11 PlyA -  80081  80076    6                               1.05
 3.10 Term -  84612  84581   32  1  2  135   38    24 0.639   0.12
 3.09 Intr -  93321  93189  133  0  1   46   96    60 0.201   2.82
 3.08 Intr - 100072 100037   36  1  0  128  100    43 0.922   7.96
 3.07 Intr - 105739 105120  620  2  2   57   84  1221 0.087 110.64
 3.06 Intr - 123143 123076   68  1  2   60   98    66 0.156   3.35
 3.05 Intr - 130456 130342  115  2  1   72   45    53 0.020  -1.09
 3.04 Intr - 131259 131142  118  0  1   54   98    60 0.036   3.64
 3.03 Intr - 141371 141177  195  2  0   58   36    94 0.009   0.81
 3.02 Intr - 144324 144157  168  0  0  112    5   261 0.073  20.34
 3.01 Init - 148592 148383  210  2  0  102   76   449 0.997  41.89
 3.00 Prom - 156786 156747   40                              -4.06

 4.03 PlyA - 157025 157020    6                              -1.95
 4.02 Term - 159868 159078  791  2  2  125   52  1429 0.938 136.48
 4.01 Init - 171008 170876  133  2  1  100  113   143 0.980  18.30
 4.00 Prom - 171246 171207   40                              -2.36

 5.00 Prom + 174050 174089   40                              -2.86
 5.01 Init + 176935 177011   77  0  2   58  119    54 0.601   6.06
 5.02 Intr + 188123 188227  105  2  0   95   95    67 0.620   7.43
 5.03 Intr + 201155 201267  113  2  2   24  108    15 0.001  -2.88
 5.04 Intr + 204001 204054   54  2  0   58  113    28 0.010   1.25
 5.05 Intr + 204922 205021  100  2  1   89   75    46 0.010   2.57

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init - 105644 105120  525  2  0   91   84  1203 0.830 114.45
S.002 Term - 144324 144121  204  0  0  112   43   285 0.925  23.77


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815578r:504594_710237|GENSCAN_predicted_peptide_1|119_aa
MAAFREIPLGAESEAVSPRLLVGGGFRFRQQRLQPRSGPCGWRPSRVSPPPSPPYCLCEQ
RGERPPPLPLPPQCWNIARLSRNQDDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILK

>gi568815578r:504594_710237|GENSCAN_predicted_CDS_1|357_bp
atggccgcattcagagagattcctctgggggcggagtcggaagctgtctcgccccgcctc
ctggtaggagggggtttccgcttccggcagcagcggctgcagcctcgctctggtccctgc
ggctggcggccgagccgtgtgtctcctcctccatcgccgccatattgtctgtgtgagcag
aggggagagcggccgccgccgctgccgcttccaccacagtgttggaacattgctagatta
agcagaaatcaagatgactaccagctggttcgaaaattaggccgaggtaaatacagtgaa
gtatttgaagccatcaacatcacaaataatgaaaaagttgttgttaaaattctcaag

>gi568815578r:504594_710237|GENSCAN_predicted_peptide_2|109_aa
MEYYAAIKKDVFMSFVETWMKLEAIILSKLSQGQKTKHRMFSLIDFGSNDSSSKRLSLPT
LFGSFIMDITIYPKPGKSNIQELADSMSGEDRFLVHRWLLTVSSHERLA

>gi568815578r:504594_710237|GENSCAN_predicted_CDS_2|330_bp
atggaatactatgcagccataaaaaaggatgtgttcatgtcctttgtagagacatggatg
aagctggaagccatcattctcagcaaactatcgcaaggacaaaaaaccaaacaccgcatg
ttctcactcatagactttggctccaatgacagctcttcaaagaggctttctctgcctacc
ctatttggttccttcataatggacatcacaatatatccgaagcctggcaagtccaacatc
caggagctggcagattccatgtctggtgaagaccgcttcctggttcatagatggcttctc
accgtgtcctcacatgaaagactagcctga

>gi568815578r:504594_710237|GENSCAN_predicted_peptide_3|564_aa
MGLRAGGTLGRAGAGRGAPEGPGPSGGAQGGSIHSGRIAAVHNVPLSVLIRPLPSVLDPA
KVQSLVDTIREDPDSVPPIDVLWIKGAQGGDYFYSFGGCHRYAAYQQLQRETIPAKLVQS
TLSDLRVCSEGEVPLSSVSKLLLCPLGWNESEDGRPLLKQLFLLAEKTQPDSAKGPARHC
EGGAEQIRSRGKLPGAIKKGFPGEVALEQKLDKVHSPSTHLTDEEIEAQKVDSWLHNLRA
PATKCLRASEGHKTCSFPKTLTPALAEDRKLNSAVSWACSHLKAYRVGELEGGGRRGRGS
ARERTAGRGRRWDAAHGGTRPAPMAFALLRPVGAHVLYPDVRLLSEDEENRSESDASDQS
FGCCEGPEAARRGPGPGGGRRAGGGGGAGPVVVVRQRQAANARERDRTQSVNTAFTALRT
LIPTEPVDRKLSKIETVRLASSYIAHLANVLLLGDSADDGQPCFRAAGSAKGAVPAAADG
GRQPRSICTFCLSNQRKGGGRRDLGGSCLKMRKRRHKEVKELGQGDTVAGGFESDVLAAE
PHWALNHHPHMTSPGPPVLFAFSP

>gi568815578r:504594_710237|GENSCAN_predicted_CDS_3|1695_bp
atggggctgcgtgcaggaggaacgctgggcagggccggcgcgggtcggggggcgcccgag
gggcccgggccgagcggcggcgcgcagggcggcagcatccactcgggccgcatcgccgcg
gtgcacaacgtgccgctgagcgtgctcatccggccgctgccgtccgtgttggaccccgcc
aaggtgcagagcctcgtggacacgatccgggaggacccagacagcgtgccccccatcgat
gtcctctggatcaaaggggcccagggaggtgactacttctactcctttgggggctgccac
cgctacgcggcctaccagcaactgcagcgagagaccatccccgccaagcttgtccagtcc
actctctcagacctaagggtttgtagcgaaggtgaggtgcccctgtcttctgtgagtaaa
ctcctcctgtgcccgctgggctggaatgagagtgaagatggtcgccccctcctgaaacaa
cttttccttcttgcagagaagacccaaccagacagcgctaagggccctgccaggcactgc
gaaggaggtgcagaacagattcggagtagagggaagctgcctggagcaatcaagaaaggc
ttcccaggggaggtggcccttgaacagaaacttgataaagttcattctccttccactcat
ttgacagatgaggaaatagaggcacagaaagtggacagctggctgcacaatctgagggcc
cctgcaaccaaatgtctgagggcttctgagggccacaagacctgttccttccccaagacc
cttaccccggccctggctgaggacaggaagctaaattcagctgtcagctgggcctgcagt
catctgaaggcctatcgggttggggagttggagggcgggggccggcggggccgtgggagc
gcgcgggagcgcacggcggggcgcggccgacgctgggacgcggcgcacggagggacgcgg
ccggcgcccatggcgttcgcgctgctgcggcccgtcggcgcgcacgtgctgtacccggac
gtgcggctgctgagcgaggacgaggagaaccgcagcgagagcgacgcgtcggaccagtcg
ttcggctgctgcgagggcccggaggcggcgcggcgcggcccgggccccgggggcgggcgg
cgggcgggcggcggcggcggcgcgggccccgtggtggtggtgcgacagcggcaggcggcc
aacgcgcgggagcgggaccgcactcagagcgtgaacacggccttcacggcgctgcgcacg
ctcatccccaccgagccggtggaccgcaagctgtccaagatcgagaccgtgcgcctggcg
tccagctacatcgcgcacctggccaacgtgctgctgctgggcgactcggccgacgacggg
cagccgtgcttccgtgccgcgggcagtgccaagggcgccgtccccgccgccgccgacggc
ggccgccagccgcgctccatctgcaccttctgcctcagcaaccagcgcaaggggggtggc
cgtcgtgacctggggggcagctgcttgaagatgaggaaacggaggcacaaggaggttaaa
gaacttggccaaggtgacacagtggctggtggatttgaatcagatgttctagctgcagag
ccccactgggctctcaaccaccacccccacatgacctcaccaggtcccccggtccttttt
gccttcagtccatga

>gi568815578r:504594_710237|GENSCAN_predicted_peptide_4|307_aa
MPRSFLVKKIKGDGFQCSGVPAPTYHPLETAYVLPGARGPPGDNGYAPHRLPPSSYDADQ
KPGLELAPAEPAYPPAAPEEYSDPESPQSSLSARYFRGEAAVTDSYSMDAFFISDGRSRR
RRGGGGGDAGGSGDAGGAGGRAGRAGAQAGGGHRHACAECGKTYATSSNLSRHKQTHRSL
DSQLARKCPTCGKAYVSMPALAMHLLTHNLRHKCGVCGKAFSRPWLLQGHMRSHTGEKPF
GCAHCGKAFADRSNLRAHMQTHSAFKHYRCRQCDKSFALKSYLHKHCEAACAKAAEPPPP
TPAGPAS

>gi568815578r:504594_710237|GENSCAN_predicted_CDS_4|924_bp
atgccgcgctccttcctggtaaagaagatcaaaggggacggcttccagtgcagcggggtg
ccggcccccacctaccaccccttggagacagcctacgtgctgcctggcgcccgggggcct
cccggggacaacgggtacgccccgcaccgcctgcccccgagcagctacgatgcggaccag
aagccgggcctggagctggccccggccgagcccgcgtacccgccggcggcgccggaggag
tacagcgaccccgaaagcccgcagtcgagcctgtcggcgcgctacttccgaggggaggcg
gcagtgaccgacagctactccatggacgccttcttcatctcggacgggcgctcgcggcgg
cggcggggcgggggcggcggggacgcggggggctcgggagacgcggggggcgccgggggg
cgcgcggggcgcgcgggggcgcaggcgggcggcgggcaccggcacgcgtgcgccgagtgc
ggcaagacctacgccacgtcgtcgaacctgagccgccacaagcagacgcaccgcagcctg
gacagccagctggcgcgcaaatgcccgacgtgcggcaaggcctacgtgtccatgcccgcg
ctcgccatgcacctgctcacgcacaacctgcgccacaagtgcggcgtctgcggcaaggcc
ttctcgcggccctggctgctgcagggtcacatgcgctcgcacaccggcgaaaagccgttc
ggctgcgcgcactgcggcaaggccttcgccgaccgctccaacctgcgcgcgcacatgcag
acgcactcggccttcaagcactaccgctgccgccagtgcgacaagagcttcgcgctcaag
tcctacctccacaagcactgcgaggcggcctgcgccaaggcggccgagccacccccgccg
acccccgccggcccggccagctga

>gi568815578r:504594_710237|GENSCAN_predicted_peptide_5|150_aa
MEFCMNSKEESSHKCIRSTLMGLSLRCREERRKFFDRKILEILLLSPIGLLEAGVSPEVF
STVLALENTAANTTDTKPWPCGVDIPGLGGGVGDQYGPRLCFVIVVNAVTDKSILEGLKR
MRTGVMSSGCEIKGDDARETLGRLALCPAA

>gi568815578r:504594_710237|GENSCAN_predicted_CDS_5|450_bp
atggaattctgtatgaattccaaggaggagagtagccacaaatgcatccgctccacgctg
atggggctctctctccgttgcagagaggaaaggaggaaatttttcgatagaaaaatcttg
gagatcctgttgctgtcacccatcgggctgttggaagctggggttagtccagaagtcttc
agcacagtgctagcccttgagaacacagcagcaaacacaacagacacaaaaccctggccc
tgtggagtggacattccagggctgggtggaggagtgggagaccaatacggaccaaggctc
tgctttgtaattgttgtgaacgctgtcactgataagagtatcctagaaggtttaaaacgg
atgcgcacaggcgttatgtcctcaggttgtgagataaaaggagacgacgccagggaaacg
ctcggtcgcttggcactgtgcccagcagcn