GENSCAN 1.0	Date run:  8-Nov-116	Time: 04:06:36

Sequence gi568815578f:43358034_43561060 : 203027 bp : 45.71% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +   5514   5531   18  2  0   68  109     5 0.193   0.79
 1.02 Intr +   6109   6251  143  0  2   34   44   106 0.196  -0.05
 1.03 Intr +   8850   8928   79  0  1   74   89    47 0.250   2.95
 1.04 Term +  10789  11622  834  0  0  -11   48   381 0.216  17.19
 1.05 PlyA +  11714  11719    6                               1.05

 2.00 Prom +  11862  11901   40                              -8.96
 2.01 Sngl +  11922  12770  849  2  0   60   49   383 0.407  27.39
 2.02 PlyA +  13695  13700    6                               1.05

 3.05 PlyA -  13772  13767    6                               1.05
 3.04 Term -  20577  20456  122  1  2  103   41    20 0.292  -2.56
 3.03 Intr -  24380  24135  246  0  0   54   91   158 0.203  10.13
 3.02 Intr -  32516  32363  154  2  1   96   45     6 0.286  -3.25
 3.01 Init -  33236  33060  177  2  0   73    1   169 0.285   5.96
 3.00 Prom -  38448  38409   40                              -2.46

 4.03 PlyA -  39646  39641    6                               1.05
 4.02 Term -  46400  45568  833  0  2   86   43   295 0.950  17.98
 4.01 Init -  47814  47766   49  0  1   97   58    12 0.697  -1.79
 4.00 Prom -  49375  49336   40                              -0.86

 5.00 Prom +  52225  52264   40                              -4.36
 5.01 Init +  71877  71882    6  2  0   92   93     0 0.148   1.75
 5.02 Term +  82678  82800  123  0  0   86   54   154 0.947  10.18
 5.03 PlyA +  85536  85541    6                               1.05

 6.00 Prom +  92985  93024   40                              -6.46
 6.01 Init + 100001 100107  107  1  2   91   92   141 0.959  14.49
 6.02 Intr + 100328 100476  149  2  2   90   73   368 0.929  35.38
 6.03 Intr + 101738 101862  125  0  2   39   95    56 0.995   1.70
 6.04 Term + 102000 102212  213  2  0   98   32   178 0.324  10.43
 6.05 PlyA + 102252 102257    6                               1.05

 7.05 PlyA - 102374 102369    6                              -1.75
 7.04 Term - 102588 102461  128  1  2   32   45   164 0.316   4.94
 7.03 Intr - 102836 102636  201  0  0   92   27   204 0.169  13.96
 7.02 Intr - 128517 128492   26  2  2   78   76    28 0.063  -1.73
 7.01 Init - 136009 135948   62  1  2   45  103    73 0.545   4.32
 7.00 Prom - 136579 136540   40                              -2.06

 8.00 Prom + 137296 137335   40                              -2.86
 8.01 Init + 155453 155606  154  1  1   99  109    67 0.277  10.30
 8.02 Intr + 155805 156028  224  1  2   66   60   153 0.786   8.15
 8.03 Intr + 156602 156743  142  1  1   29   57   163 0.806   7.23
 8.04 Intr + 156976 157126  151  2  1   57   91   107 0.997   7.12
 8.05 Intr + 157259 157382  124  2  1   67   58   152 0.996  10.69
 8.06 Intr + 158060 158144   85  1  1   12   68    64 0.089  -3.81
 8.07 Intr + 170624 170712   89  0  2   91   86    95 0.983   9.29
 8.08 Intr + 171231 171335  105  2  0   48   83   166 0.827  12.51
 8.09 Intr + 172251 172386  136  2  1   47  116   169 0.998  15.74
 8.10 Intr + 172765 172856   92  2  2  -36   94   123 0.974   0.21
 8.11 Intr + 174740 174891  152  1  2   99   27   293 0.797  23.26
 8.12 Intr + 176232 176361  130  0  1   52   34   226 0.402  14.30
 8.13 Intr + 176795 176909  115  1  1   76   74   105 0.998   7.92
 8.14 Intr + 177804 177903  100  1  1  116  117   -44 0.598   0.47
 8.15 Intr + 178064 178261  198  2  0  102   72   134 0.833  11.67
 8.16 Intr + 178376 178425   50  2  2   75   89    52 0.990   2.32
 8.17 Intr + 182118 182275  158  1  2   91   78   141 0.976  13.13
 8.18 Intr + 182720 182782   63  1  0   61   94    67 0.842   3.51
 8.19 Intr + 186504 186578   75  2  0   55   72    55 0.468   0.31
 8.20 Term + 190078 190212  135  0  0   77   42   201 0.729  12.42
 8.21 PlyA + 192897 192902    6                               1.05


Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term +  91918  92063  146  2  2  128   41    86 0.811   5.97


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815578f:43358034_43561060|GENSCAN_predicted_peptide_1|357_aa
MIKRGQGQSEATVPSAFGPTLSVKQELGQTGGNALELSGTYLTTLRQAAVQPSCNVDAVG
GHNPKQLNAKQKTKYHMFSLTTSRLIKKKREKNQIDAIKNDKGDITTNPTEIQTTIREYY
KHLSANKLENLEEMDKFLDTYTLPRLNQEEVESLNRPITGSEIVAIINSLPTKKSPGPDG
FTAEFYQRYKEELVPFLLKLFQPTEKKRILPNSFYEASIILIPKPGTDTTKKENFRPISL
RNIDVKILNKILANQIQQHIKKLIHHDQVGFIPGMQGWFNIRKSINVIQHINRTKDKNHM
IISIDAEKAFDKIQQPFMLKTFNKLDIDGTYLKIIRAIYDKPTANIILNGQNWKHSL

>gi568815578f:43358034_43561060|GENSCAN_predicted_CDS_1|1074_bp
atgattaaacgagggcagggacaaagtgaggccacggttccctcggccttcggacccact
ctcagcgtcaaacaagagctgggccagacagggggaaatgcactggaactctctggcacc
tacctgaccaccctcagacaggcagcagtgcagcccagctgcaacgtggatgcagttgga
ggccataatcctaagcaacttaacgcaaaacagaaaaccaaataccacatgttctcactt
accactagcagactaataaagaagaaaagagagaagaatcaaatagatgcaataaaaaat
gataaaggggatatcaccaccaatcccacagaaatacaaactaccatcagagaatactac
aaacacctctccgcaaataaactagaaaatctagaagaaatggataaattcctcgacaca
tacactctcccaagactaaaccaggaagaagttgaatctctgaatagaccaataacaggc
tctgaaattgtggcaataatcaatagcttaccaaccaaaaagagtccaggaccggatgga
ttcacagccgaattctaccagaggtacaaggaggaactggtaccattccttctgaaacta
ttccaaccaacagaaaagaagagaatcctccctaactcattctatgaggccagcatcatc
ctgataccaaagccgggcacagacacaaccaaaaaagagaattttagaccaatatccttg
aggaacattgatgtaaaaatcctcaataaaatactggcaaaccaaatccagcagcacatc
aaaaagcttatccaccatgatcaagtgggcttcatccctgggatgcaaggctggttcaat
atacgcaaatcaataaatgtaatccagcatataaacagaaccaaagacaaaaaccacatg
attatctcaatagatgcagaaaaggcctttgacaaaattcaacaacccttcatgctaaaa
actttcaataagttagatattgatgggacatatctcaaaataataagagctatctatgac
aaacccacagccaatatcatactgaatgggcaaaactggaagcattccctttga

>gi568815578f:43358034_43561060|GENSCAN_predicted_peptide_2|282_aa
MSELPFTIASKRIKYLGIQLTRDVKDLVKENYKPLLNEIKEDTNKWKNIPCSWVGRINIV
KMAILPKVIYRFNAIPIKLPMTFFTELEKTTLKFIWNQKRARIAKSILSQKNKAGGIMLP
DFKLYYKATVTKTAWYWYQNRDIDQWNRTEPSEIMPHIYNYLIFDKPDKNKKWGKDSLFH
KWCWENWLAIYRKLKLGPFLTPYTKINPRWIKDLNVRPKTIKTLEENLGITIQDIGMGKD
FMSKTPKAMATKAKIDKWDLIKLKSFCTAKETTITVNRQPTK

>gi568815578f:43358034_43561060|GENSCAN_predicted_CDS_2|849_bp
atgagtgaactcccattcacaattgcttcaaagagaataaaatacctaggcatccaactt
acaagggacgtgaaggacctcgtcaaggagaactacaaaccactgctcaatgaaataaaa
gaggacacaaacaaatggaagaacattccatgctcatgggtaggaagaatcaatattgtg
aaaatggccatactgcccaaggtaatttatagattcaatgccatccccatcaagttacca
atgactttcttcacagaattggaaaaaactactttaaagttcatatggaaccaaaaaaga
gcccgcattgccaagtcaatcctaagccaaaagaacaaagctggaggcatcatgctacct
gacttcaaactgtactacaaggctacagtaaccaaaacagcatggtactggtaccaaaac
agagatatagatcaatggaacagaacagagccctcagaaataatgccgcatatctacaac
tatctgatctttgacaaacctgacaaaaacaagaaatggggaaaggattccctatttcat
aaatggtgctgggaaaactggctagccatatatagaaagctgaaactgggtcccttcctt
acaccttatacaaaaattaatccaagatggattaaagacttaaatgttagacctaaaacc
ataaaaaccctagaagaaaacctaggcattaccattcaggacataggcatgggcaaggac
ttcatgtctaaaacaccaaaagcaatggcaacaaaagccaaaattgacaaatgggatctc
attaaactaaagagcttctgcacagcaaaagaaactaccatcacagtgaacaggcaacct
acaaaatag

>gi568815578f:43358034_43561060|GENSCAN_predicted_peptide_3|232_aa
MDAGNDCQWQLTAQEETKAESEQTSGFNSNGPNLQLRKSEEHVKLYDRDADNKIQTMGHR
PEAGWHQLRSPKASGGGATAPLPAATPRPQRPPPPPPQRPPGFLLFPTTQGHRGYDGLAW
AQRPDSCGIVDFVFVVLVVRESQPEVQSRLSFSLLPCVQGGKAEQKELASGVILSPFQVL
ALPLLYQNLGKTDATALGSGSQIKHASESPERLVENTGGWAPPPEFDSVDLG

>gi568815578f:43358034_43561060|GENSCAN_predicted_CDS_3|699_bp
atggatgcaggtaatgattgccaatggcagctgacagcacaagaagagaccaaagctgaa
tctgaacaaacctccggattcaactccaacggaccgaatctacaactcagaaaatctgag
gaacacgtgaaattatatgacagggatgcagacaacaaaatccagactatgggacatagg
ccggaggctggctggcatcagctgcgttccccgaaggcgtcaggaggtggcgccactgct
cctctgccggctgcaactccgcgcccccagcgccccccaccgcccccgcctcagaggccg
ccagggttcctgctcttccctacaacgcagggtcacaggggatatgatggcttagcttgg
gctcagaggcctgacagctgtggcattgtggactttgtcttcgtggtgctcgtggtacga
gagagtcagcctgaagtccagtccaggctttccttttccctgctgccttgtgttcaagga
ggcaaggcagagcagaaagagctggcctctggtgttatactgagcccatttcaagtccta
gctctgccattgctatatcagaacctgggcaaaacagatgccactgctttgggcagtgga
tctcaaattaagcatgcatcagagtcacctgaaaggctcgtagaaaacacaggtggctgg
gccccacctccagagtttgattcagtggatcttgggtag

>gi568815578f:43358034_43561060|GENSCAN_predicted_peptide_4|293_aa
MAFHHVGQTGLELLTSGVPELKEIETQKTLQKINESRSWFFEKSNKIHRSLARLIKKKRE
VNQIDAIKNDKGDITTDPTEIQTTIRDYYKHLYANKLENLEEMDKFLGTYTFPRLNQKEV
ESLNRPITGSETEAIINSLPTKKSPGPDGFTAEFYQRYKEEMVPFLLKLFQLIEKEGILP
NSFYEASIILIPKPGRDTTKKENFRLISLMNIDAKILSKILENRIQQHIKKLIHHDQVGF
IPGMQGWFNIYKSINVIQHINRTKDKNHTIISIDAEKAFDKIQQRFMLKLSIN

>gi568815578f:43358034_43561060|GENSCAN_predicted_CDS_4|882_bp
atggcgtttcaccatgttggtcagactggtctcgaactcctgacctcaggtgtacctgaa
ctgaaggagatagagacacaaaaaacccttcaaaaaatcaatgaatccaggagctggttt
tttgaaaagagcaacaaaattcatagatcgctagcaagactaataaagaagaaaagagag
gtgaatcaaatagatgcaataaaaaatgataaaggggatatcaccaccgatcccacagaa
atacaaactaccatcagagactactataaacacctctatgcaaataaactagaaaatcta
gaagaaatggataaattcctgggcacatacaccttcccaagactaaaccagaaagaagtt
gaatccctgaatagaccaataacaggctctgaaactgaggcaataattaatagcctacca
accaaaaaaagtccaggaccagacggattcacagccgaattctaccagagatacaaggag
gagatggtaccattccttctgaaactattccaattaatagaaaaagagggaatcctccct
aactcattttatgaggccagcatcatcctgataccaaaacctggcagagacacaacaaaa
aaagagaattttagactaatatccctgatgaacatcgatgcaaaaatcctcagcaaaata
ctggaaaaccgaatccagcagcacatcaaaaagcttatccaccatgatcaagtgggcttc
atccctgggatgcaaggctggttcaacatatacaaatcaataaatgtaatccagcatata
aacagaaccaaagacaaaaaccacacgattatctcaatagatgcagaaaaggcctttgac
aaaattcaacagcgcttcatgctaaaactctcaataaattag

>gi568815578f:43358034_43561060|GENSCAN_predicted_peptide_5|42_aa
MTEKFANSWSTPCQALTMHHHTYFSTRLWKVSYYDVHATDEK

>gi568815578f:43358034_43561060|GENSCAN_predicted_CDS_5|129_bp
atgactgaaaagtttgccaactcctggtccacaccgtgccaggcactgacgatgcaccac
cacacttacttctcaactcgactctggaaggtgtcctactacgatgtccatgctacagat
gagaaatga

>gi568815578f:43358034_43561060|GENSCAN_predicted_peptide_6|197_aa
MPRVYIGRLSYNVREKDIQRFFSGYGRLLEVDLKNGYGFVEFEDSRDADDAVYELNGKEL
CGERVIVEHARGPRRDRDGYSYGSRSGGGGYSSRRTSGRDKYGPPVRTEYRLIVENLSSR
CSWQDLKDFMRQAGEVTYADAHKERTNEGVIEFRSYSDMKRALDKLDGTEINGRNIRLIE
DKPRTSHRRSYSGSRSR

>gi568815578f:43358034_43561060|GENSCAN_predicted_CDS_6|594_bp
atgccgcgcgtctacataggacgcctgagctacaacgtccgggagaaggacatccagcgc
tttttcagtggctatggccgcctcctcgaagtagacctcaaaaatgggtacggcttcgtg
gagttcgaggactcccgcgacgccgacgacgccgtttacgagctgaacggcaaggagctc
tgcggcgagcgcgtgatcgtagagcacgcccggggcccgcgtcgcgatcgcgacggctac
agctacggaagccgcagtggtggaggtggatacagcagtcggagaacatctggcagagac
aaatacggaccacctgttcgtacagaatacaggcttattgtagaaaatctttctagtcgg
tgcagttggcaagatttaaaggattttatgcgacaagcaggtgaagtaacctatgcggat
gcccacaaggaacgaacaaatgagggtgtaattgagtttcgctcctactctgacatgaag
cgtgctttggacaaactggatggcacagaaataaatggcagaaatattaggcttattgaa
gataagccacgcacaagccataggcgatcttactctggaagcagatccaggtaa

>gi568815578f:43358034_43561060|GENSCAN_predicted_peptide_7|138_aa
MRMFLKCVPQKLVAAQEAQLMCCGRDLVGGDRDRDLLRDFSYSSLDLLRECEWEPRSDLG
LDLLFDLDFLPFDRERDRPLLRDLELDKERPIFSILMTQHNVIYRERLFEILRDLLRLLL
RLLLRDRLLDRDLLGEKQ

>gi568815578f:43358034_43561060|GENSCAN_predicted_CDS_7|417_bp
atgaggatgtttctgaagtgtgtgccccagaagctcgtggcagctcaggaggctcagctc
atgtgttgtgggagggacctggtgggaggggatcgggaccgagacctgcttcgagatttc
tcatactcatccttagatctgcttcgagaatgtgaatgggagccccgatcagacttgggc
ttagatttgctctttgatctagatttcctgccttttgatcgagaacgtgatcgacctttg
ctccgcgacctggaactggacaaggaaagaccgattttctcaatacttatgactcaacac
aacgttatttaccgggagcgactttttgagatacttcgagatctactgcggctgctcctg
cgactcctacttcgtgaccgtcttctagatcgagacctattaggagaaaaacaatga

>gi568815578f:43358034_43561060|GENSCAN_predicted_peptide_8|825_aa
MEGHAGMEGHAEMEMLRTLKGPSTGEVSMHLVAGDSPGSGPHLPATAFIIPASSATLGLP
SSALDVSCFPREPIHVGAPEQVAGCEPVSATVLPQLSAGPASSSTSTVRLLEWTEAAAPP
PGGGLRFRISEYKPLNMAGVEQPPSPELRQEGVTEYEDGGAPAGDGEAGPQQAEDHPQNP
PEDPNQDPPEDDSTCQCQACGPHQAAGPDLGSSNDGCPQLFQERSVIVENSSGSTSASEL
LKPMKKRKRREYQSPSEEESEPEAMEKQEEGKDPEGQPTASTPESEEWSSSQPATGEKKE
CWSWESYLEEQKAITAPVSLFQDSQAVTHNKNGFKLGMKLEGIDPQHPSMYFILTVAEVC
GYRLRLHFDGYSECHDFWVNANSPDIHPAGWFEKTGHKLQPPKGYKEEEFSWSQYLRSTR
AQAAPKHLFVSQSHSPPPLGFQVGMKLEAVDRMNPSLVCVASVTDVVDSRFLVHFDNWDD
TYDYWQLSPLQRPPHSFLVNMKLEAVDRRNPALIRVASVEDVEDHRIKIHFDGWSHGYDF
WIDADHPDIHPAGWCSKTGHPLQPPLGPREPSSASPGGCPPLSYRSLPHTRTSKYSFHHR
KCPTPGCDGSGHVTGKFTAHHCLSGCPLAERNQSRLKAELSDSEASARKKNLSGFSPRKK
PRHHGRIGRPPKYRKIPQEDFQTLTPDVVHQSLFMSALSAHPDRSLSVCWEQHCKLLPGV
AGISASTVAKWTIDEVFGFVQTLTGCEDQARLFKDESQTARPQTLAFALKNLEPGLWQLP
WMIDGEAFLLLTQADIVKIMSVKLGPALKIYNAILMFKNADDTLK

>gi568815578f:43358034_43561060|GENSCAN_predicted_CDS_8|2478_bp
atggaggggcatgctgggatggaggggcatgctgaaatggagatgctgaggacactgaag
gggccttccacaggggaggtcagcatgcacttggtggccggagacagccccggttctggt
cctcacctgcccgcaactgccttcatcattccagccagttcggccaccctcggcctgccc
agcagtgccctggatgtgtcttgctttccccgggagccaatccatgtgggtgccccggag
caagtggccggctgcgaaccagtttctgccaccgtcctgccgcagcttagcgccgggccg
gccagctccagcaccagcacagtgcggcttctggaatggacagaggccgcggccccgccc
ccagggggcggcctgcggttccggataagcgagtataagccgctgaacatggcgggagtg
gagcagcccccgagccccgagctgcggcaggaaggcgtgaccgaatacgaagatggcggg
gccccggcgggagatggcgaggcgggcccccaacaggcggaggaccacccccagaatcct
ccagaagatcccaatcaggaccccccagaggatgatagcacctgtcagtgccaggcgtgc
gggcctcaccaagccgcgggtccagatcttggttcctctaatgatggctgccctcagctg
ttccaggagcggtcagtcatagtggagaactcctcaggctctaccagcgcttctgagctc
ctcaaacccatgaagaagaggaagcgcagggaataccagagcccatcagaggaggagtcg
gagccagaggccatggagaagcaagaagaaggaaaggacccagagggacaacccactgct
agcaccccagagagtgaggagtggagcagcagccagcctgcaacaggtgagaagaaggaa
tgctggtcgtgggagtcctacctagaggagcagaaggccattactgctccagtcagcctc
ttccaggactcccaggcagtcactcacaacaagaatggcttcaaactgggcatgaagttg
gaaggcattgaccctcaacacccgtccatgtacttcatcctcaccgtggctgaggtatgt
ggctatcgcctacgcctgcactttgatgggtattctgagtgccatgacttctgggtcaat
gccaactcccctgacattcaccctgctggctggttcgagaagacgggccacaagctgcag
cctcccaaaggttacaaggaggaggagttcagctggagccagtacctgcgcagcacaaga
gctcaggctgcccccaagcacctgtttgtgagccagagccacagtcccccacccctgggc
ttccaggtgggcatgaagctggaggctgttgaccgcatgaacccgtcccttgtctgcgtg
gccagtgtgaccgatgtggtggacagccgcttcctggtgcactttgacaactgggatgat
acttatgactactggcagctgtcccctctgcagcgaccccctcacagcttcctggtcaat
atgaagctggaggctgtggaccgcaggaacccagccctgattcgcgtggccagcgtggag
gatgtggaggaccatcggataaagatccactttgatggctggagtcatggctatgatttc
tggatcgacgctgaccacccagacatccaccctgccggctggtgctccaagacaggacat
cccctgcagcctcctctcggacccagagagcccagctctgcctcccctgggggctgtccc
cctctcagctataggagcctgccccacactaggacctccaaatacagctttcaccaccgg
aagtgccccactcctggttgcgacggctctggccatgtcacaggcaagttcacagctcac
cattgcctctcaggctgcccactggctgagaggaaccagagccggctgaaagcggagctg
tctgactcggaggcctcagcccgcaagaagaacctctcaggcttctccccaaggaagaag
cctcgccatcacggccgaattggacgccctccgaagtatcgaaagattccgcaggaagat
ttccagaccctcacgcccgatgtcgtgcaccagtccctcttcatgtcagccctgtcggcc
caccctgaccgctcactctcagtgtgctgggagcagcactgcaagctcctgccaggagta
gcgggcatctcagcctcgacagtcgccaagtggaccatcgatgaggtcttcggctttgtt
cagaccctgacaggttgtgaggaccaagcacgcctcttcaaagacgagtctcagactgcc
agaccacagactctggcctttgctttgaagaacctggaacctgggctttggcagttaccg
tggatgattgacggcgaggccttccttttgctgacacaggcggacattgtgaagatcatg
agcgtcaagctgggcccagccttgaagatctataacgccattctcatgttcaaaaacgct
gatgacaccttaaagtga