GENSCAN 1.0	Date run:  5-Nov-116	Time: 05:32:27

Sequence gi568815577r:6345561_6563871 : 218311 bp : 49.45% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.25 PlyA -   2094   2089    6                               1.05
 1.24 Term -   4202   4065  138  2  0   65   42    96 0.219   0.66
 1.23 Intr -   7979   7913   67  1  1   91   99    43 0.156   4.61
 1.22 Intr -  30464  30371   94  0  1   84   71    67 0.000   3.62
 1.21 Intr -  84122  84000  123  0  0   90   58    66 0.009   4.36
 1.20 Intr -  90940  90853   88  1  1   89   76    92 0.517   7.64
 1.19 Intr -  92242  92155   88  0  1   43   77    63 0.272   0.67
 1.18 Intr - 100101 100002  100  1  1  118   -4   234 0.005  16.37
 1.17 Intr - 103056 102921  136  0  1  107   65   213 0.765  21.04
 1.16 Intr - 104371 104077  295  0  1  122   85   188 0.514  18.91
 1.15 Intr - 105086 104952  135  1  0  121   44   228 0.999  21.38
 1.14 Intr - 105421 105344   78  0  0  118   99   147 0.997  17.47
 1.13 Intr - 105928 105848   81  0  0   98   68    49 0.830   2.65
 1.12 Intr - 106664 106559  106  0  1  100   66   212 0.999  19.47
 1.11 Intr - 108513 108429   85  0  1   54  101   176 0.999  14.89
 1.10 Intr - 108862 108629  234  1  0   11   64   131 0.634   0.89
 1.09 Intr - 109196 109071  126  2  0   76   90   276 0.961  27.48
 1.08 Intr - 110109 110018   92  1  2   40   96   138 0.741   9.51
 1.07 Intr - 111390 111321   70  0  1   99   74   134 0.999  11.85
 1.06 Intr - 111639 111505  135  0  0   90   94   164 0.999  17.96
 1.05 Intr - 111813 111734   80  1  2  122   98   120 0.999  15.67
 1.04 Intr - 112495 112361  135  2  0   81   80   289 0.999  27.94
 1.03 Intr - 114532 114338  195  2  0   29   76    88 0.593   1.09
 1.02 Intr - 114733 114627  107  0  2   89   65   155 0.845  13.16
 1.01 Init - 118311 118103  209  0  2   86  105   105 0.550  10.35
 1.00 Prom - 119040 119001   40                              -9.26

 2.00 Prom + 119874 119913   40                              -9.26
 2.01 Init + 120735 120848  114  2  0   50  116   124 0.338  10.94
 2.02 Intr + 122864 122936   73  1  1   57   71    81 0.358   2.28
 2.03 Intr + 125768 125996  229  0  1   59   64   202 0.791  11.83
 2.04 Intr + 127656 127744   89  0  2   77   72    70 0.656   3.91
 2.05 Intr + 129824 129873   50  0  2   75   80    24 0.235  -1.30
 2.06 Term + 133700 133834  135  1  0  117   44    69 0.394   3.42
 2.07 PlyA + 134529 134534    6                               1.05

 3.10 PlyA - 135938 135933    6                               1.05
 3.09 Term - 139356 139209  148  2  1   93   52   103 0.681   4.57
 3.08 Intr - 140670 140578   93  2  0   60   81   123 0.983   7.88
 3.07 Intr - 140895 140762  134  0  2   87   84   234 0.999  22.34
 3.06 Intr - 141645 141547   99  0  0   82   97   174 0.987  18.01
 3.05 Intr - 141852 141803   50  1  2  118   78    51 0.973   5.50
 3.04 Intr - 147550 147484   67  1  1  113   93    11 0.695   2.58
 3.03 Intr - 153263 153143  121  1  1  -23   41   144 0.405  -0.90
 3.02 Intr - 153664 153569   96  0  0   57   89   207 0.686  16.82
 3.01 Init - 167102 165976 1127  2  2   60   53   298 0.510  17.17
 3.00 Prom - 168360 168321   40                              -4.66

 4.00 Prom + 183150 183189   40                              -5.26
 4.01 Init + 186447 186583  137  2  2   69   84   113 0.925   8.61
 4.02 Intr + 188311 188440  130  1  1   67   41    75 0.835   1.40
 4.03 Term + 189958 190038   81  0  0   96   33    96 0.770   2.59
 4.04 PlyA + 191789 191794    6                               1.05

 5.00 Prom + 198766 198805   40                              -5.66
 5.01 Init + 203583 203650   68  2  2   69   86    68 0.409   5.25
 5.02 Intr + 206889 207094  206  0  2  109   75    67 0.698   6.34
 5.03 Intr + 212029 212135  107  2  2   90   65    53 0.359   3.13
 5.04 Intr + 215133 215411  279  2  0   52   94   464 0.603  41.07
 5.05 Intr + 216641 216763  123  1  0   61   99   333 0.761  32.48
 5.06 Intr + 218195 218251   57  1  0  125  -10   108 0.345   3.78

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term -  26868  26806   63  0  0  102   44    81 0.960   2.99
S.002 Intr -  86598  86488  111  2  0  107   51   106 0.884   8.29
S.003 Term - 100101  99998  104  1  2  118   45   247 0.995  21.84
S.004 Sngl - 200353 199877  477  1  0   71   43   191 0.843   7.00


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815577r:6345561_6563871|GENSCAN_predicted_peptide_1|998_aa
MPSETPQAEVGPTGCPHRSGPHSAKGSLEKGSPEDKEAKEPLWIRPDAPSRCTWQLGRPA
SESPHHHTAPAKSPKILPDILKKIGDTPMVRINKIGKKFGLKCELCKALGSENSLVNEWP
RTYQLKFGKNTQQGIVSEGDQSDSPADGQGNEQVTFELRPEWKQRGCEGPVAKCEFFNAG
GSVKDRISLRMIEDAERDGTLKPGDTIIEPTSGNTGIGLALAAAVRGYRCIIVMPEKMSS
EKVDVLRALGAEIVRTPTNARFDSPESHVGVAWRLKNEIPNSHILDQYRNASNPLAHYDT
TADEILQQCDGKLDMLVASVGTGGTITGIARKLKEKCPGCRIIGVDPEGSILAEPEELNQ
TEQTTYEVEGIGYDFIPTVLDRTGCSPGGTGREQGKRVKIKAPEKSVKSQKADFGLRESR
DRRAGVGHTDAQWGWRAVLLSAKRVGTGKSADVPIPGGEAGVVDKWFKSNDEEAFTFARM
LIAQEGLLCGGSAGSTVAVAVKAAQELQEGQRCVVILPDSVRNYMVSSMACKLQRLHSSR
ELSCPWRARPGWTKFLSDRWMLQKGFLKEEDLTEKKPWWWHLRVQELGLSAPLTVLPTIT
CGHTIEILREKGFDQAPVVDEAGVILGMVTLGNMLSSLLAGKVQPSDQVGKVIYKQFKQV
PSHLQAAQTDAQSPTGSSNRCPVTYTQLKQVRGHLQAAQTGERSPTGSSNRYPVTYRQLK
QKTRGAMFPLPLTTLPLQIRLTDTLGRLSHILEMDHFALVVHEQIQYHSTGKSSQRQMVF
GVVTAIDLLNFVAAQERDQNNGLNYALASSYLKDGDRAAVDTNKGFSPQALEPLVSAQTQ
PLSGAGTHSSHKHRHLVACVHASSVTPAATGEAAVSVSAQVCATHDVSANNGLSRPRRSR
CKPCRSWNQWEDVGNQRLKALQNHHANMELPHQSLLTPTIEGAFVTVRRYRALRPLCGCS
YHSPVLAVVAGLVHLVFFQKEGGVGHIKKLLINLNAAL

>gi568815577r:6345561_6563871|GENSCAN_predicted_CDS_1|2997_bp
atgccttctgagaccccccaggcagaagtggggcccacaggctgcccccaccgctcaggg
ccacactcggcgaaggggagcctggagaaggggtccccagaggataaggaagccaaggag
cccctgtggatccggcccgatgctccgagcaggtgcacctggcagctgggccggcctgcc
tccgagtccccacatcaccacactgccccggcaaaatctccaaaaatcttgccagatatt
ctgaagaaaatcggggacacccctatggtcagaatcaacaagattgggaagaagttcggc
ctgaagtgtgagctctgcaaggccctgggatcagaaaactcgctggttaatgagtggcca
agaacatatcagcttaagtttgggaaaaacacacaacagggcattgtgtcagagggtgac
caaagtgactccccagcagatggacaagggaacgaacaggtgacctttgaactgaggccg
gagtggaagcagcgagggtgtgaagggccggtggccaagtgtgagttcttcaacgcgggc
gggagcgtgaaggaccgcatcagcctgcggatgattgaggatgctgagcgcgacgggacg
ctgaagcccggggacacgattatcgagccgacatccgggaacaccgggatcgggctggcc
ctggctgcggcagtgaggggctatcgctgcatcatcgtgatgccagagaagatgagctcc
gagaaggtggacgtgctgcgggcactgggggctgagattgtgaggacgcccaccaatgcc
aggttcgactccccggagtcacacgtgggggtggcctggcggctgaagaacgaaatcccc
aattctcacatcctagaccagtaccgcaacgccagcaaccccctggctcactatgacacc
accgctgatgagatcctgcagcagtgtgatgggaagctggacatgctggtggcttcagtg
ggcacgggcggcaccatcacgggcattgccaggaagctgaaggagaagtgtcctggatgc
aggatcattggggtggatcccgaagggtccatcctcgcagagccggaggagctgaaccag
acggagcagacaacctacgaggtggaagggatcggctacgacttcatccccacggtgctg
gacaggacgggatgtagcccaggtggcacaggcagggagcagggaaaacgtgtgaaaatt
aaggccccggaaaagtctgttaagagccaaaaagctgactttggcctgagggagagcaga
gaccgaagggccggtgtgggtcacacggatgctcagtggggctggcgggcagttttgctg
tctgcaaaacgtgttggaactggaaagtctgcagacgtgccgatcccagggggagaggct
ggggtggtggacaagtggttcaagagcaacgatgaggaggcgttcacctttgcccgcatg
ctgatcgcgcaagaggggctgctgtgcggtggcagtgctggcagcacggtggcggtggcc
gtgaaggccgcgcaggagctgcaggagggccagcgctgcgtggtcattctgcccgactca
gtgcggaactacatggtttcctccatggcctgcaagctgcagcggctacacagctcccga
gagctcagctgcccttggagggccaggcctggctggaccaagttcctgagcgacaggtgg
atgctgcagaagggctttctgaaggaggaggacctcacggagaagaagccctggtggtgg
cacctccgtgttcaggagctgggcctgtcagccccgctgaccgtgctcccgaccatcacc
tgtgggcacaccatcgagatcctccgggagaagggcttcgaccaggcgcccgtggtggat
gaggcgggggtaatcctgggaatggtgacgcttgggaacatgctctcgtccctgcttgcc
gggaaggtgcagccgtcagaccaagttggcaaagtcatctacaagcagttcaaacaggta
cccagtcacctacaggcagctcaaacagatgcgcagtcacctacaggcagctcaaacagg
tgcccggtcacctacacgcagctcaaacaggtgcgcggtcacctacaggcagctcaaaca
ggtgagcggtcacctacaggcagctcaaacaggtacccggtcacctacaggcagctcaaa
cagaaaactcgtggggccatgttccccctgccactgaccacgcttcccttgcagatccgc
ctcacggacacgctgggcaggctctcgcacatcctggagatggaccacttcgccctggtg
gtgcacgagcagatccagtaccacagcaccgggaagtccagtcagcggcagatggtgttc
ggggtggtcaccgccattgacttgctgaacttcgtggccgcccaggagcgggaccagaac
aatggcttgaattatgccctggcatcaagctacctaaaggatggagacagagccgctgtg
gacacgaacaaaggcttttctccgcaggctctggagccgctggtgagcgcacagacacag
cccctctccggggcaggcactcacagcagccacaagcaccgccacctcgtggcctgtgtc
cacgcttcttctgtaacccctgccgccacaggcgaggctgcagtgagcgtctctgcacag
gtctgtgctacccacgatgtttcagccaacaacggactgagcagaccaaggaggtcccgg
tgtaaaccatgtcgttcgtggaaccagtgggaagatgttggcaaccaaaggttgaaagcc
ttgcaaaaccatcatgcaaacatggagttgccacatcaaagtctgctcacaccaaccata
gaaggagcctttgtcactgtcagaagatacagagctttgagacccctatgtggctgctct
taccacagcccggtgctggctgtggttgctggcttagtgcacctggtctttttccaaaaa
gagggaggagttggccacatcaagaagctcctcatcaatctgaatgcagctctgtaa

>gi568815577r:6345561_6563871|GENSCAN_predicted_peptide_2|229_aa
MLRRRIFQKAVDPRPRQTQAAQRLAFGPSPRPGALSRKRKTRTVPISSGQRNVLRLRSVP
GSEYNTYAESAHVMSGQRINRYPTGGRAEGRGLGLHHPLVAGRLGPQNWRRLEEEEEEEE
GKEEEEEGKEEEEEGKEERIFLTLKEGHDLTIPLQKRKTSVQEQGAELGTGPASLHAVWA
QADPQEICPHCSTRQDVPSSSSFRTYLLAAAAHLYLHHYLLLYSLLFPD

>gi568815577r:6345561_6563871|GENSCAN_predicted_CDS_2|690_bp
atgctccgccgccgaatcttccagaaagccgtggacccgaggccccggcagacgcaggcg
gcccagcgccttgcttttggcccctcgcctcgccctggagccctctctcgcaagcgaaag
acacggacggtgcccatcagctctgggcagaggaacgtgctgcgcctccgcagcgtcccc
ggctcagagtataacacgtatgcagaaagtgcacatgtcatgagtggacagaggataaac
cgctaccccactggggggcgagcagaggggagaggcctgggcctgcaccatcccctggtg
gccggaaggctgggccctcagaactggaggagattggaggaggaggaggaggaagaggaa
gggaaggaggaggaagaggaagggaaggaggaggaagaggaagggaaggaggagaggatc
ttcctaacactgaaggaggggcacgacctgaccatccctttacagaagagaaagacgagt
gtgcaggaacagggagcagagctgggcacagggccagcgtccctgcatgctgtgtgggcc
caagctgacccgcaggaaatctgccctcactgctccacgcgccaggacgtgccctcctcc
tcctctttccgcacctatctcctggctgcggctgctcacttgtacctgcaccattactta
ctgctgtattctttgctttttccagactga

>gi568815577r:6345561_6563871|GENSCAN_predicted_peptide_3|644_aa
MSELPFTIASKRIKYLGIQLTRDVKDLFKENYKPLLKEIKEDTNKWKNIPCSCIGRINIV
KMAILPKVIYRFNAIPIKLPMTFFTELEKTTLKFIWNQKRTHIAKTILSQKNKAGGITLP
DFKLYYKATVTKTAWYWYQNRDIDKWNRTEPSETIPHIYNHLIFDKPDKNKKWGKDSLFN
KWCWENWLAICRKLKLDPFLTPYTKINSRWIKDLNVRPKTIKTLEENLGNTIQDIGMGKD
FMSKTPKAMATKAKIDKWDLIKLKSFCTAKETTIRVNRQPTEWEKIFAIYSSDKGLISRI
YKELKQTYKKKTNNPIKKWAKDMNRHFSKEDIYAANRHMKKCLSSLAIREMQIKTIMRYH
LTPVRMAIIKKSGNNRVGGVGSSVDGSGGGGWEMAEYLASIFGTEKDNRRLPEAASSRAE
SCLEHPGLLDVDTFVPTFGCECPVEQALTILIQNIYRNPQNSAQTADGSHCAVSDVEMQE
HYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFN
GQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRELRRELYGRRRKKHRSR
SRSRERRSRSRDRGRGGGGGGGGGGGGRERDRRRSRDRERSGRF

>gi568815577r:6345561_6563871|GENSCAN_predicted_CDS_3|1935_bp
atgagtgaactcccattcacaattgcttcaaagagaataaaatacctaggaatccaactt
acaagagatgtgaaggacctcttcaaggagaactacaaaccactgctcaaagaaataaaa
gaggacacaaacaaatggaagaacattccatgctcatgcataggaagaatcaatatcgtg
aaaatggccatactgcccaaggtaatttatagattcaatgccatccccatcaagctacca
atgactttcttcacagaattggaaaaaactactttaaagtttatatggaaccaaaaaaga
acccacattgccaagacaatcctaagccaaaagaacaaagctggaggcatcacactacct
gacttcaaactatactacaaggctacagtaaccaaaacagcatggtactggtaccaaaac
agagatatagacaaatggaatagaacagagccctcagaaacaataccacacatctacaac
catctgatctttgacaaacctgacaaaaacaagaaatggggaaaggattccctatttaat
aaatggtgctgggaaaactggctagccatatgtagaaagctgaaactggatcccttcctt
acaccttatacaaaaattaattcgagatggattaaagacttaaatgttagacctaaaacc
ataaaaaccctagaagaaaacctaggcaataccattcaggacataggcatgggcaaggac
ttcatgtctaaaacaccaaaagcaatggcaacaaaagccaaaattgacaaatgggatcta
attaaactaaagagcttctgcacagcaaaagagactaccatcagagtgaacaggcaacct
acagaatgggagaaaatttttgcaatctactcatctgacaaagggctaatatccagaatc
tacaaagaactcaaacaaacttacaagaaaaaaacaaacaaccccatcaaaaagtgggca
aaggatatgaacagacacttctcaaaagaagacatttatgcagccaacagacacatgaaa
aaatgcttatcatcactggccatcagagaaatgcaaatcaaaaccataatgagataccat
ctcacaccagttagaatggcgatcattaaaaagtcaggaaacaacagggtcggcggcgtc
ggcagcagtgtcgacggcagcggcggcggcgggtgggaaatggcggagtatctggcctcc
atcttcggcaccgagaaagacaatcgccggctcccggaagccgcctcgagccgcgctgaa
agttgcctggagcatccgggccttttggacgtggacacgtttgttccaactttcggctgt
gaatgtcctgtcgagcaagctctgaccatcttgattcaaaacatctatcgtaatccccaa
aacagtgcacagacggctgacggctcacactgtgccgtgagcgatgtggagatgcaggaa
cactatgatgagttttttgaggaggtttttacagaaatggaggagaagtatggggaagta
gaggagatgaacgtctgtgacaacctgggagaccacctggtggggaacgtgtacgtcaag
tttcgccgtgaggaagatgcggaaaaggctgtgattgacttgaataaccgttggtttaat
ggacagccgatccacgccgagctgtcacccgtgacggacttcagagaagcctgctgccgt
cagtatgagatgggagaatgcacacgaggcggcttctgcaacttcatgcatttgaagccc
atttccagagagctgcggcgggagctgtatggccgccgtcgcaagaagcatagatcaaga
tcccgatcccgggagcgtcgttctcggtctagagaccgtggtcgtggcggtggcggtggc
ggtggtggaggtggcggcggacgggagcgtgacaggaggcggtcgagagatcgtgaaaga
tctgggcgattctga

>gi568815577r:6345561_6563871|GENSCAN_predicted_peptide_4|115_aa
MIYPIFGMSVSDGGGSGGGEITESMSAKHTLLGAPPPTAQLKDKRPQGDSRKGDGVTGQD
PSYEWELDQELSVLSHLLPVLGPLSETLQAMELTILPLAAVVLFRGTVIAFISIL

>gi568815577r:6345561_6563871|GENSCAN_predicted_CDS_4|348_bp
atgatctacccaatatttgggatgtccgtgagtgatggcggtggtagtggtggtggtgaa
atcacggaatcaatgtctgcaaagcacacgctcttgggagcacctcctcccaccgcacag
ctgaaagacaagcgaccacagggagacagcagaaagggagatggagtcaccggccaggac
cccagctatgagtgggagctggaccaggagttgagtgtcctgagccacctcctccctgtg
ctgggtccactctcagaaacactccaggccatggagctgaccatcctgcctctggcagct
gtggtgctgtttaggggaacggtcattgccttcatctccattttatag

>gi568815577r:6345561_6563871|GENSCAN_predicted_peptide_5|280_aa
MPTTLVRPEITEESEHPGDAACPSPMQPTLGPAQPLGRRGWSPCAVPSAAHPAERPQAAG
LHTCDRPEAPAAGPTRLQFPSRQPMALRPLPDSGAGSLRSPLQARPILWQSLDVPRRPLS
RQALQRVGGLGLGSTLRCPEAPLTPASLQVPVVPKLNMDVTIQHPWFKRTLGPFYPSRLF
DQFFGEGLFEYDLLPFLSSTISPYYRQSLFRTVLDSGISEVRSDRDKFVIFLDVKHFSPE
DLTVKVQDDFVEIHGKHNERQDDHGYISREFHRRYRLPSN

>gi568815577r:6345561_6563871|GENSCAN_predicted_CDS_5|840_bp
atgcccaccacgctcgtgaggccggagatcaccgaggaatccgagcacccgggggacgct
gcatgcccgagccccatgcagcccacactgggtcctgcccagcccctgggccggagggga
tggtccccctgcgccgtccccagcgctgcccaccctgcagaacgtcctcaggcggccggg
ctccacacctgcgacaggcccgaggccccggctgcaggccccactcggctgcagttcccg
tcgaggcagccaatggccttgaggcctctcccagactcaggcgctggctcactcagaagc
cccctgcaggcccggccaatcctgtggcagagcctcgacgtcccacggcggcctctgagc
cgccaggccctacagcgtgtgggagggctcggccttggctccacactgcgctgcccagag
gccccgctgactcctgccagcctccaggtccccgtggtaccaaagctgaacatggatgtg
accatccagcacccctggttcaagcgcaccctggggcccttctaccccagccggctgttc
gaccagtttttcggcgagggcctttttgagtatgacctgctgcccttcctgtcgtccacc
atcagcccctactaccgccagtccctcttccgcaccgtgctggactccggcatctctgag
gttcgatccgaccgggacaagttcgtcatcttcctcgatgtgaagcacttctccccggag
gacctcaccgtgaaggtgcaggacgactttgtggagatccacggaaagcacaacgagcgc
caggacgaccacggctacatttcccgtgagttccaccgccgctaccgcctgccgtccaac