GENSCAN 1.0	Date run:  7-Nov-116	Time: 03:56:30

Sequence gi568815577r:5872956_6073333 : 200378 bp : 46.23% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +    262    336   75  0  0   69   51    58 0.266   1.57
 1.02 Intr +   5451   5554  104  2  2   48   84    67 0.318   1.27
 1.03 Intr +  11246  11449  204  2  0  109   26   123 0.199   6.52
 1.04 Intr +  24986  25130  145  2  1   27   47   122 0.002   2.28
 1.05 Term +  33615  34004  390  2  0   77   42   215 0.579  10.79
 1.06 PlyA +  34670  34675    6                               1.05

 2.04 PlyA -  36663  36658    6                               1.05
 2.03 Term -  41483  41338  146  0  2   32   38   143 0.907   1.77
 2.02 Intr -  42952  42819  134  0  2   66   36   130 0.633   5.89
 2.01 Init - 100378 100002  377  1  2   88    4   877 0.038  75.71
 2.00 Prom - 108785 108746   40                              -5.16

 3.03 PlyA - 108970 108965    6                               1.05
 3.02 Term - 109987 109784  204  1  0  103   43    64 0.392   0.77
 3.01 Init - 112300 112109  192  1  0  104   66    63 0.467   4.67
 3.00 Prom - 112770 112731   40                              -5.46

 4.03 PlyA - 112912 112907    6                               1.05
 4.02 Term - 114300 114040  261  0  0   27   42   199 0.687   4.73
 4.01 Init - 114388 114335   54  1  0   86   36    89 0.765   4.78
 4.00 Prom - 124552 124513   40                              -2.56

 5.00 Prom + 125284 125323   40                              -5.56
 5.01 Init + 128772 128832   61  2  1   74   77     6 0.368  -0.49
 5.02 Term + 135650 135858  209  0  2   63   43   227 0.879  13.20
 5.03 PlyA + 136396 136401    6                               1.05

 6.00 Prom + 155562 155601   40                              -1.96
 6.01 Init + 159813 159855   43  2  1   74   91    35 0.630   2.99
 6.02 Intr + 159943 160193  251  2  2   50  101   144 0.462   9.06
 6.03 Intr + 162698 162833  136  1  1   36   36    73 0.133  -2.96
 6.04 Term + 167195 167346  152  0  2   82   41   143 0.683   7.07
 6.05 PlyA + 168642 168647    6                               1.05

 7.09 PlyA - 169260 169255    6                               1.05
 7.08 Term - 170133 170074   60  0  0   62   54    86 0.935   0.40
 7.07 Intr - 170431 170337   95  2  2   62   92   138 0.837  11.28
 7.06 Intr - 172480 172454   27  2  0  114   91    24 0.438   3.39
 7.05 Intr - 175964 175517  448  2  1   60   -6   345 0.249  15.22
 7.04 Intr - 177819 177670  150  0  0   85   89    35 0.836   3.66
 7.03 Intr - 180412 180222  191  2  2   11   71    87 0.638  -1.40
 7.02 Intr - 180612 180474  139  0  1   75   53   136 0.945   8.84
 7.01 Init - 183290 183198   93  2  0   79   26   114 0.965   4.68
 7.00 Prom - 184015 183976   40                              -6.56

 8.05 PlyA - 184542 184537    6                              -0.45
 8.04 Term - 185736 185626  111  0  0   86   54   148 0.782   9.76
 8.03 Intr - 195137 194909  229  1  1   69   38   162 0.161   7.17
 8.02 Intr - 198254 198145  110  2  2   86   81    59 0.589   4.08
 8.01 Intr - 199113 199055   59  1  2   76   66    98 0.589   5.00

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Sngl - 100378  99998  381  1  0   88   37   875 0.958  78.57


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815577r:5872956_6073333|GENSCAN_predicted_peptide_1|305_aa
MSLNALVTSSALSVLVGKALSYPEKCSRADDSHIRDTWELSMNGVLYTVPGAQNADEGGG
LFNQQTDQQAKISTIVANLNADEWIKTHSSLAMNGIMYGGIIQSGYRGELKIIVYNITRE
SFAVKLQIINQEEIESLKRQTTGSEIQAVINSLQTTKRSETQRLKAEGYDIYEEELPPLL
IPRQTGSGVDLQQTPTDLQLRVLTVRRKTNKQKVHPQQNPICTSQSSKTKGEKTTKMGKK
QSRKTENSKNQSISPPPKEHSSSPAMEQSWTENDFDELREEGFRRSNYSELKEEVQTHGK
EVKNL

>gi568815577r:5872956_6073333|GENSCAN_predicted_CDS_1|918_bp
atgtctcttaacgccttggtcacgtctagtgccctctctgtcctggtgggaaaggccttg
agctatcctgaaaagtgcagccgtgctgatgactcacatatcagggatacatgggaactg
tcaatgaacggagtgctctacacagtgcctggagctcagaatgcagatgagggaggagga
ctatttaatcagcagacagatcaacaggccaaaatttccaccatagttgcaaatttgaat
gcggatgaatggattaaaacacattcaagtcttgcaatgaacggcataatgtatggtggt
ataattcagagtggttacaggggagagttaaagatcattgtatacaatatcactcgagaa
tcttttgctgtaaaactgcagataataaaccaggaagaaattgaatccctgaaaagacaa
acaacaggctctgaaattcaggcagtaataaatagcctacaaaccacaaaaagatcagaa
acacaaagattaaaagctgaaggttatgacatttatgaagaagaactgcctccactgctg
atacccaggcaaacagggtctggagtggacctccagcaaactccaacagacctgcagctg
agggttctgactgttagaaggaaaactaacaaacagaaagtacatccacaacaaaatccc
atctgtacatcacaatcatcaaagaccaaaggagagaaaactacaaagatggggaaaaaa
cagagcagaaaaacggaaaattctaaaaatcagagtatctctccacctccaaaggaacac
agctcctcaccagcaatggaacaaagctggacagagaatgactttgacgaattgagagaa
gaaggcttcagacgatcaaactactccgagctaaaggaggaagttcaaacccatggcaaa
gaagtgaaaaacctttaa

>gi568815577r:5872956_6073333|GENSCAN_predicted_peptide_2|218_aa
MPEPAKSAPAPKKGSKKAVTKAQKKDGRKRKRSRKESYSVYVYKVLKQVHPDTGISSKAM
GIMNSFVNDIFERIAGEASRLPHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT
KYTSAKASSQKVPKTIQPELLKKTVALSAHRIIRNFHLSIEKNAPLEFGAESLIHPYDIP
LSIAQTKKLTSQPKCSSVLIFTDVSGLTMLSIIWKQLD

>gi568815577r:5872956_6073333|GENSCAN_predicted_CDS_2|657_bp
atgccggagccagcgaagtccgctcccgcgcccaagaagggctcgaagaaagccgtgact
aaggcgcagaagaaggacggcaggaagcgcaagcgcagccgcaaggagagctactccgta
tacgtgtacaaggtgctgaagcaggtccaccccgacaccggcatctcctctaaggccatg
ggaatcatgaactccttcgtcaacgacatcttcgaacgcatcgcaggtgaggcttcccgc
ctgccgcattacaacaagcgctcgaccatcacctccagggagatccagacggccgtgcgc
ctgctgctgcccggggagttggccaagcacgccgtgtccgagggcaccaaggccgtcacc
aagtacaccagcgctaaagcatcctcccagaaagtccccaaaaccattcaaccagagctc
ctgaaaaaaacagtcgcactctctgcccatcggatcatccggaatttccatttatccatt
gagaagaatgctccattggagtttggcgcagaatccctcatccatccctatgatattcca
cttagcattgctcagaccaagaaactcacttcacagccaaagtgtagcagtgtgctcatc
ttcacggatgtcagtggacttaccatgctttccattatctggaagcaactggattaa

>gi568815577r:5872956_6073333|GENSCAN_predicted_peptide_3|131_aa
MMTQVKNSTPDFTRQVTIKRQAHNTQFIQSHQGKRDRSGPFGCDVFSMQARIPQCKHTHK
GNKMNQITLSRGLGITSSISAESPRVGQAHSACCYHHRCDPPICATCRSKDQPTQPVTAV
TNISTLENSPA

>gi568815577r:5872956_6073333|GENSCAN_predicted_CDS_3|396_bp
atgatgacacaagtgaaaaattccacacctgacttcacacgacaggttacaatcaaaagg
caggcacacaacacacagtttattcagagtcaccaagggaaaagagaccgttcaggtccc
tttggctgcgatgtcttttccatgcaggcccggattccccaatgcaagcacacccacaaa
ggtaataaaatgaaccagatcacactgtccaggggcctggggatcaccagtagcatctca
gcagagtctcccagagtgggtcaggcccactcagcttgctgctaccaccaccgctgcgac
ccacccatatgtgccacctgcaggtccaaggaccagcccacccaacctgtcacagccgtc
acaaacatcagcactttggaaaacagcccagcataa

>gi568815577r:5872956_6073333|GENSCAN_predicted_peptide_4|104_aa
MAPTKGGEKKKGRSTINKHIHRVAFKKRAPQALKEIWKFAMKEMGTPDMCIDTRLNKAVW
TKGIRNIPYRIRVRLSRKCKENEDSPNKLYTLITYVPVTAFKNL

>gi568815577r:5872956_6073333|GENSCAN_predicted_CDS_4|315_bp
atggctcctacaaagggtggcgagaagaaaaagggccgttctaccatcaacaagcacatc
cacagagtggccttcaagaagcgtgcccctcaggcactcaaagagatttggaaatttgcc
atgaaggagatgggaactccagatatgtgcattgataccaggctcaacaaagctgtctgg
accaaaggaataaggaatatcccataccgcatccgtgtgcggttgtccagaaaatgtaaa
gagaatgaagattcaccaaataaactctatactttgattacttatgtacccgttactgct
ttcaaaaatctatag

>gi568815577r:5872956_6073333|GENSCAN_predicted_peptide_5|89_aa
MKAYKLRKQSRDRGNVLELVDPDAEVCLHVLRLVQSVVLEPEVFSKSASEFRSSLPLQRI
LAMSKSRNPRLQTAAQELLEDLRTLEHNV

>gi568815577r:5872956_6073333|GENSCAN_predicted_CDS_5|270_bp
atgaaggcctataaactccggaaacaaagtagagatagagggaatgtcttagagcttgta
gatccagatgcagaggtgtgccttcatgtactgaggcttgtccagtctgtggttctggaa
cctgaagtcttctccaagtcggcctctgagttccggagctccctgcccctgcaacgcatc
ctggcaatgtccaagagccgcaacccccgcctgcaaaccgcagcccaggagctcctggaa
gatctccgcactctggagcataatgtgtag

>gi568815577r:5872956_6073333|GENSCAN_predicted_peptide_6|193_aa
MVNHISLQGHANLDVLLGEQRSEYLGNPFGTMCDVEHHVPFLQQVPCRHPQEKLEHVLTS
QGSSVGSSPKPDTAQCHPRVKEHFMARCTRKPHTALATCPQSPGLGANDSPVALGLAVLG
STTDPKLPDCSRYRRNAPESSSRRCPHSGTFSHLDDSNGLIQYRSVPAADNDWNLGNVSM
ARQGPVEVAEATA

>gi568815577r:5872956_6073333|GENSCAN_predicted_CDS_6|582_bp
atggtcaaccacattagtctccagggacacgcaaacctggatgtgcttctgggggagcag
cggtctgaatatttgggaaacccgtttggcactatgtgtgacgttgaacatcatgtgccc
tttctacagcaggttccctgcaggcacccccaggagaagctcgagcatgtgctcacatct
cagggcagttctgttgggagcagccccaagccagacacagcccagtgccatcccagagtt
aaggagcacttcatggcgcgctgcacgcggaaaccccacacagctctggccacgtgtcca
cagagccctggcctgggagctaacgactcccctgtagccctggggcttgctgtgctgggg
agcaccacagaccccaaacttcctgattgctctcggtacagacgaaatgcgcccgagtct
tccagcagacgctgccctcattcaggtaccttttcacacttggatgactccaacgggctg
attcagtaccgcagtgtcccagcagctgacaatgactggaacttggggaacgtctccatg
gccagacagggccctgttgaggtggctgaggccacagcttaa

>gi568815577r:5872956_6073333|GENSCAN_predicted_peptide_7|400_aa
MGCVSESGPDQGQQSHWQTGEDEDKALLPDTATATPDVPSQLPTGHRYGDTKCAGGKVIC
VVLSCRRHTTAPEELPPGTCHRACRVPPSCWHVRCLLAEPRSCVAVALLHHCLVHRALSS
GALRAVMRGHVYSLAGLSRSQRHSPWRCLVELSMAALRGNRSATQLHRLLSSHLSIPLLP
PVPSGFLGHLQAPPPALGTTSPHETRAGHPSYIALFNREEQRLHTVCCSEQPETNSKRKG
ETPTPNEKKEKHQHQTKRRRNTNSKQKGETPTPNEKKEKHQHQTKRRRNTNTKRKEGETP
TPNEKKEKQSQHKAGPTLGVFNRALQLYNVLVIKVNVARHALLMSQLVPDSRQDLPPTKD
FTWTELLGPKQLTFDSRNNCAGKNDGDGENLHVPVAGNCL

>gi568815577r:5872956_6073333|GENSCAN_predicted_CDS_7|1203_bp
atgggctgcgtgtcagagtcaggcccagaccagggacagcaaagccactggcagacaggc
gaggatgaggacaaggccctgctgccggacacagcaacagcaactccagatgtcccatca
cagctgcccaccggacacagatatggggacaccaagtgcgcagggggcaaagtcatctgc
gttgtgctcagctgccgccgccacacaacagcaccagaagagctcccgccggggacatgc
caccgagcatgccgggtgccaccgagctgctggcatgttcggtgcctgctggctgaacct
cggagttgcgtggcggtggctttgcttcatcactgtctggttcaccgtgctctaagttcg
ggagccctgcgagcagtgatgcgtggccacgtctacagcctcgctggcctgtcacgttcc
cagaggcacagcccttggaggtgcctggtggaactgagcatggctgctctccgtgggaac
cgctcagcaactcagctgcacagactcctttcttcccacctctccatcccactgctccct
cctgtcccctcgggcttcctgggtcacctccaggccccacctccagcactggggactaca
tccccacatgagaccagagcgggacatccaagctatattgccctcttcaacagggaggag
cagaggctgcacactgtgtgctgctcagagcagccagagaccaacagcaaacgaaaagga
gaaacaccaacaccaaacgaaaagaaggagaaacaccaacaccaaacgaaaagaaggaga
aacaccaacagcaaacaaaaaggagaaacaccaacaccaaacgaaaagaaggagaaacac
caacaccaaacgaaaagaaggagaaacaccaacaccaaacgaaaagaaggagaaacacca
acaccaaacgaaaagaaggagaaacagagccagcacaaggcgggaccaaccctgggcgtg
ttcaacagagccctgcagctctataatgttttagttattaaagtgaatgtggccaggcat
gcccttctgatgagtcagctggtgccagattcacggcaggatctgcccccgacaaaggac
ttcacctggaccgagctcctgggccccaagcagctgacatttgattctcgcaacaactgt
gcagggaagaatgatggagacggcgagaatctgcatgtgcccgtggctggcaactgcttg
tga

>gi568815577r:5872956_6073333|GENSCAN_predicted_peptide_8|169_aa
XPRLRALADFHELRPPATKTARAQGNKQKEFRETAPGSSSKADTKSEHLWALLPSRRKVK
ETGLPSTVQAVSELLQVLLCKQKAGGCTPDQGPHTSKVLTEASSLPRISRMCLLVREESS
VAQTNTITFPSSQTWSSKASCLAFRPTIKTASRNDDGLMDAGHRQPGDH

>gi568815577r:5872956_6073333|GENSCAN_predicted_CDS_8|510_bp
ngtccaaggctacgcgccctggcagacttccatgagctgcgaccaccagccaccaagacg
gcaagagcacaaggaaacaagcagaaggaattcagagaaacagctccaggctccagctca
aaggccgacaccaaaagcgaacacctctgggcgctcttgccttcaagaaggaaagtaaaa
gaaacaggtcttccttccactgtgcaggcagtcagcgagctcctgcaggtcctgctctgt
aagcagaaagctggaggctgcaccccagatcaaggccctcacacctcaaaggttctcacg
gaggcctcgtctctgccccgcatctccagaatgtgcttgctggtcagagaagagtccagt
gtggctcagacaaacacaatcacctttcccagcagccagacatggtccagcaaggccagc
tgtctggctttccggccgacgatcaaaacagcaagtcggaatgatgatgggctgatggac
gcgggccaccgacaaccaggtgaccactga