GENSCAN 1.0	Date run:  4-Nov-116	Time: 02:43:55

Sequence gi568815577f:25641599_25869229 : 227631 bp : 39.68% C+G : Isochore 1 ( 0 - 43 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init -   2389   2253  137  1  2   61   68   116 0.095   6.56
 1.00 Prom -   8687   8648   40                              -1.85

 2.00 Prom +  22006  22045   40                              -4.55
 2.01 Init +  23281  23353   73  0  1   87   14    93 0.149   3.08
 2.02 Intr +  42285  42350   66  1  0  100   87    49 0.090   3.96
 2.03 Intr +  48268  48375  108  2  0   49  121    17 0.341   0.44
 2.04 Intr +  52158  52325  168  1  0   81   20   172 0.449   8.70
 2.05 Intr +  57079  57281  203  2  2   37   95   151 0.635   8.78
 2.06 Intr +  60572  60671  100  1  1    8   87   102 0.400   0.86
 2.07 Intr +  64381  64488  108  2  0   43  108    48 0.302   1.64
 2.08 Intr +  73579  73714  136  2  1   59   70    74 0.024   1.41
 2.09 Term +  77441  77546  106  2  1   83   33    67 0.019  -2.40
 2.10 PlyA +  78254  78259    6                               1.05

 3.05 PlyA -  78761  78756    6                               1.05
 3.04 Term -  83079  83042   38  1  2  118   49    62 0.982   1.82
 3.03 Intr -  83752  83628  125  0  2  101  102   145 0.999  16.51
 3.02 Intr -  88203  88033  171  2  0  100   98   202 0.836  20.54
 3.01 Init -  88362  88328   35  0  2   61   80    34 0.807  -0.71
 3.00 Prom -  88690  88651   40                              -9.35

 4.00 Prom +  89658  89697   40                             -10.25
 4.01 Init +  90764  90772    9  1  0   55   61     0 0.228  -5.36
 4.02 Intr +  92181  92315  135  2  0   90  103    40 0.543   5.54
 4.03 Intr +  92595  92661   67  2  1   67   61    69 0.713  -0.34
 4.04 Intr +  93043  93171  129  2  0   93  100    82 0.777   9.65
 4.05 Intr +  93266  93472  207  0  0   13  110   174 0.549  10.23
 4.06 Intr +  93843  93980  138  1  0    8   92    92 0.256   1.11
 4.07 Intr +  99999 100077   79  1  1   13   81   117 0.026   1.19
 4.08 Intr + 103612 103756  145  1  1   36   91   134 0.999   7.86
 4.09 Intr + 107438 107522   85  1  1   45  115    57 0.997   2.57
 4.10 Intr + 110391 110636  246  1  0   47   45   278 0.453  15.91
 4.11 Intr + 116412 116606  195  1  0   71   11   122 0.533   1.26
 4.12 Intr + 120714 120767   54  1  0   88   92    79 0.982   6.33
 4.13 Intr + 122612 122752  141  0  0   81   68    72 0.923   3.90
 4.14 Intr + 122997 123189  193  1  1   72  121   237 0.998  23.03
 4.15 Term + 127406 127634  229  2  1   65   52   274 0.999  16.62
 4.16 PlyA + 127965 127970    6                               1.05

 5.00 Prom + 128614 128653   40                              -6.85
 5.01 Init + 137790 138008  219  2  0   71   73   296 0.972  25.08
 5.02 Intr + 152290 152394  105  0  0   51   98    48 0.014   1.59
 5.03 Intr + 168304 168342   39  0  0  138   61    45 0.027   4.30
 5.04 Intr + 170738 170882  145  1  1   -6   98   125 0.022   3.03
 5.05 Term + 181525 181637  113  2  2  102   32    81 0.861   1.64
 5.06 PlyA + 182698 182703    6                               1.05

 6.05 PlyA - 183328 183323    6                               1.05
 6.04 Term - 192532 192254  279  1  0   -7   48   289 0.692   9.86
 6.03 Intr - 195133 195059   75  1  0   65   72    55 0.410   0.39
 6.02 Intr - 201627 201471  157  2  1   37   44   154 0.363   4.99
 6.01 Init - 202238 202201   38  2  2   22   77    84 0.382   0.23
 6.00 Prom - 203126 203087   40                             -10.05

 7.00 Prom + 206163 206202   40                              -6.45
 7.01 Init + 206744 206924  181  1  1   83   61    91 0.725   5.29
 7.02 Term + 207090 207658  569  1  2   61   32   309 0.747  16.19
 7.03 PlyA + 207841 207846    6                               1.05

 8.04 PlyA - 208625 208620    6                               1.05
 8.03 Term - 214512 214313  200  1  2   17   49   143 0.495  -0.12
 8.02 Intr - 215359 215145  215  0  2   33   60   127 0.063   1.84
 8.01 Init - 220683 220613   71  0  2   89   23    78 0.036   1.98

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init -  41250  40891  360  0  0   46   99   181 0.835  11.23
S.002 Init + 100001 100077   77  1  2   91   81   115 0.969  11.71
S.003 Term + 138061 138117   57  0  0   95   39    59 0.823  -1.59


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815577f:25641599_25869229|GENSCAN_predicted_peptide_1|46_aa
MAFIASWWSDFNKASSSYLYIPIHLLYEEGPQEETNAMETMGGEHP

>gi568815577f:25641599_25869229|GENSCAN_predicted_CDS_1|138_bp
atggcctttatagcttcctggtggtctgacttcaataaagctagcagctcttacctctat
attccaatacatcttctctatgaggaaggcccacaggaggaaaccaatgcaatggaaacc
atgggtggtgaacatccn

>gi568815577f:25641599_25869229|GENSCAN_predicted_peptide_2|355_aa
MESVSLCETLNVNGQSEGEDAGKEHHKAYGFSAPKDQQVVTAVEYQEAILACKTPKKTVS
SRLEWKKLGRSVSFVYYQQTLQGDFKNRAEMIDFNIRIKNVTRSDAGKYRCEVSAPSEQG
QNLEEDTVTLEVLGDVHVLAPAVPSCEVPSSALSGTVVELRCQDKEGNPAPEYTWFKDGI
RLLENPRLGSQSTNSSYTMNTKTGTLQFNTVSKLDTGEYSCEARNSVGYRRCPGKRMQVD
DLNISGIIAAVVVVALVISVCGLGVCYAQRKGYFSKRRKRDGSYAQGFALCVYFHSWELK
ATSKEMPNGWSPQVCTTGFAWLSIASQRLSPGTSTLQYPLSHNVNLSSSKGSFSL

>gi568815577f:25641599_25869229|GENSCAN_predicted_CDS_2|1068_bp
atggaatctgtatccctttgtgaaacactaaatgtcaatggccagtctgagggagaagat
gcaggaaaagaacatcataaggcctatgggttttctgccccaaaagaccaacaagtagtc
acagcagtagagtaccaagaggctattttagcctgcaaaaccccaaagaagactgtttcc
tccagattagagtggaagaaactgggtcggagtgtctcctttgtctactatcaacagact
cttcaaggtgattttaaaaatcgagctgagatgatagatttcaatatccggatcaaaaat
gtgacaagaagtgatgcggggaaatatcgttgtgaagttagtgccccatctgagcaaggc
caaaacctggaagaggatacagtcactctggaagtattaggtgatgtgcatgtattggct
ccagcagttccatcatgtgaagtaccctcttctgctctgagtggaactgtggtagagcta
cgatgtcaagacaaagaagggaatccagctcctgaatacacatggtttaaggatggcatc
cgtttgctagaaaatcccagacttggctcccaaagcaccaacagctcatacacaatgaat
acaaaaactggaactctgcaatttaatactgtttccaaactggacactggagaatattcc
tgtgaagcccgcaattctgttggatatcgcaggtgtcctgggaaacgaatgcaagtagat
gatctcaacataagtggcatcatagcagccgtagtagttgtggccttagtgatttccgtt
tgtggccttggtgtatgctatgctcagaggaaaggctacttttcaaaaaggaggaagcgg
gatgggtcttatgcccaaggatttgcactttgtgtttacttccattcctgggaactaaaa
gcaacatcaaaagaaatgcctaatggctggagcccacaggtgtgcaccacaggatttgcc
tggctttcaatagcatctcaacgtttatctccgggaacttccaccctccagtaccctctc
agtcacaacgtcaatctctccagttccaaaggctccttttccctctaa

>gi568815577f:25641599_25869229|GENSCAN_predicted_peptide_3|122_aa
MGNKEEKGTVVRISMILQRLFRFSSVIRSAVSVHLRRNIGVTAVAFNKELDPIQKLFVDK
IREYKSKRQTSGGPVDASSEYQQELERELFKLKQMFGNADMNTFPTFKFEDPKFEVIEKP
QA

>gi568815577f:25641599_25869229|GENSCAN_predicted_CDS_3|369_bp
atggggaataaggaggagaagggaactgtggtcagaatcagcatgattcttcagaggctc
ttcaggttctcctctgtcattcggtcagccgtctcagtccatttgcggaggaacattggt
gttacagcagtggcatttaataaggaacttgatcctatacagaaactctttgtggacaag
attagagaatacaaatctaagcgacagacatctggaggacctgttgatgctagttcagag
tatcagcaagagctggagagggagctttttaagctcaagcaaatgtttggtaatgcagac
atgaatacatttcccaccttcaaatttgaagatcccaaatttgaagtcatcgaaaaaccc
caggcctga

>gi568815577f:25641599_25869229|GENSCAN_predicted_peptide_4|683_aa
MSQMIKLYLRKIKLHVFSQLICSKSDCIDVTPSATRVKSTFIVSIIHHYHRVPREHMIAS
DMIRKTGEGNKRVSILFLGLRQTPRSTNVEVSCDPGPGREGPQDTELLSPPSKVPSCQSL
RRHHLRSTSGPGSAPTRLPAIAMHYGPPFQSVDAHRTGSVSETVCDRTGLGETEAKQEEE
VEGPWDLTLLVAGAAGLTRRDAARGALAAAVLSRLWSAGGGDRADSGVAMTKREAEELIE
IEIDGTEKAECTEESIVEQTYAPAECVSQAIDINEPIGNLKKLLEPRLQCSLDAHEICLQ
DIQLDPERSLFDQGVKTDGTVQLSVQVISYQGIEPKLNILEIVKPADTVEVVIDPDAHHA
ESEAHLVEEAQVITLDGTKHITTISDETSEQVTRWAAALEGYRKEQERLGIPYDPIQWST
DQVLHWVVWVMKEFSMTDIDLTTLNISGRELCSLNQEDFFQRVPRGEILWSHLELLRKYV
LASQEQQMNEIVTIDQPVQIIPASVQSATPTTIKVINSSAKAAKVQRAPRISGEDRSSPG
NRTGNNGQIQLWQFLLELLTDKDARDCISWVGDEGEFKLNQPELVAQKWGQRKNKPTMNY
EKLSRALRYYYDGDMICKVQGKRFVYKFVCDLKTLIGYSAAELNRLVTECEQKKLAKMQL
HGIAQPVTAVALATASLQTEKDN

>gi568815577f:25641599_25869229|GENSCAN_predicted_CDS_4|2052_bp
atgagccagatgataaaactgtatctaagaaagattaagctgcacgtattctcacagtta
atttgctctaagtctgactgcatagatgttactccttctgcaacacgggtaaaatccact
ttcattgtttcaattatccaccattaccatcgggtgccacgagagcatatgatagcgtct
gacatgatcagaaagactggggaaggcaacaagagggtatcgatcttatttctgggtcta
cggcaaactccaaggtctacaaacgtagaggtcagctgtgaccccgggccaggccgtgaa
ggtccccaggacacagagctgctctctcctcctagtaaagtcccgagctgccaaagcctc
cgccgccaccacctccgctctacttccggccctggctccgcccccacacgcctacccgcc
atcgcaatgcattatgggccgccgtttcagtcggtcgacgctcaccggacaggaagcgtc
tcggagacagtctgcgaccggacgggtctaggtgagacagaagccaaacaggaggaggaa
gtggaggggccctgggacctcacacttctagtcgcgggagctgcaggtcttacccggaga
gacgctgcacgtggagccctcgccgctgccgttctcagccggctctggagtgcgggcggg
ggcgacagggccgattccggagtggccatgactaaaagagaagcagaggagctgatagaa
attgagattgatggaacagagaaagcagagtgcacagaagaaagcattgtagaacaaacc
tacgcgccagctgaatgtgtaagccaggccatagacatcaatgaaccaataggcaattta
aagaaactgctagaaccaagactacagtgttctttggatgctcatgaaatttgtctgcaa
gatatccagctggatccagaacgaagtttatttgaccaaggagtaaaaacagatggaact
gtacagcttagtgtacaggtaatttcttaccaaggaattgaaccaaagttaaacatcctt
gaaattgttaaacctgcggacactgttgaggttgttattgatccagatgcccaccatgct
gaatcagaagcacatcttgttgaagaagctcaagtgataactcttgatggcacaaaacac
atcacaaccatttcagatgaaacttcagaacaagtgacaagatgggctgctgcactggaa
ggctataggaaagaacaagaacgccttgggataccctatgatcccatacagtggtccaca
gaccaagtcctgcattgggtggtttgggtaatgaaggaattcagcatgaccgatatagac
ctcaccacactcaacatttcggggagagaattatgtagtctcaaccaagaagattttttt
cagcgggttcctcggggagaaattctctggagtcatctggaacttctccgaaaatatgta
ttggcaagtcaagaacaacagatgaatgaaatagttacaattgatcaacctgtgcaaatt
attccagcatcagtgcaatctgctacacctactaccattaaagttataaatagtagtgcg
aaagcagccaaagtacaaagagcgccgaggatttcaggagaagatagaagctcacctggg
aacagaacaggaaacaatggccaaatccaactatggcagtttttgctagaacttcttact
gataaggacgctcgagactgcatttcttgggttggtgatgaaggtgaatttaagctaaat
cagcctgaactggttgcacagaaatggggacagcgtaaaaataagcctacgatgaactat
gagaaactcagtcgtgcattaagatattattacgatggggacatgatttgtaaagttcaa
ggcaagagatttgtgtacaagtttgtctgtgacttgaagactcttattggatacagtgca
gcggagttgaaccgtttggtcacagaatgtgaacagaagaaacttgcaaagatgcagctc
catggaattgcccagccagtcacagcagtagctctggctactgcttctctgcaaacggaa
aaggataattga

>gi568815577f:25641599_25869229|GENSCAN_predicted_peptide_5|206_aa
MNTPEGRNSEHIRTSEGTNSGHAAFKNCNTARVHGFMLEVGKTKNPPIPDTFWRPRRDFC
LSLSGETIAYRQACWGYMHEPPHLAMSSSFCCLSVSEVPPVIKDTSQKCDAPDPPSPSIM
INLHPEYTKNSNSMKSRQNIRTNIPIRRYKNDRLGVVAHGCNPRTCKGQGVFVRCGQAGL
RLGLRLPQQFYFCQLGYKKLCCNLVV

>gi568815577f:25641599_25869229|GENSCAN_predicted_CDS_5|621_bp
atgaacacaccggaaggaagaaactcggaacacatccgaacatcagaaggaacaaactcc
ggacacgccgcctttaagaactgtaacaccgccagggtccacggcttcatgcttgaagtt
ggtaagaccaagaacccaccaattccggacacgttttggcgaccacgaagggacttttgc
ctgtcgctgagcggtgagaccatcgcctatcgccaagcatgctggggttatatgcatgag
ccgccacacttggccatgtcatcttccttctgttgcttgtctgtatcggaagttcctccc
gttattaaggataccagtcaaaagtgtgatgctcccgatcctccttcaccttccatcatg
attaacttgcatccagaatatacaaagaactcgaactcaatgaaaagtcgacaaaatatt
cgaacaaacattccaataagacgatataaaaatgaccggctgggcgtggttgctcatggc
tgcaatcccagaacttgtaaaggccaaggtgtatttgtcaggtgtggacaggcaggtctg
cggttgggcttgcgtcttcctcaacagttctacttctgccaactgggttataaaaagctc
tgctgcaatctggtggtttaa

>gi568815577f:25641599_25869229|GENSCAN_predicted_peptide_6|182_aa
MNLTDPCKEQEQCNDPKTQLCSHYQGTFDRKTLRGSFSPEIHQAAERECGGETEGERVSA
DRVTKKSPQKKLLLLLSVKVELSYVIADKPLATLNPLWEEASRQANTGSGQLLLGASRSK
LYAGPMAASKWGYLRPLKPKRTCYSAISALPATFGLSVNSSVGPLPHHMRRLPSTTNGKG
PV

>gi568815577f:25641599_25869229|GENSCAN_predicted_CDS_6|549_bp
atgaacctgacggacccctgcaaggaacaagagcagtgcaacgacccaaaaactcagctc
tgttctcattaccagggaacatttgacaggaaaaccttgagaggtagtttttccccagag
attcatcaggcagcagaaagggaatgtgggggagaaactgaaggagaacgagtgtcagca
gacagagttaccaagaaaagtcctcagaagaaattattattgttactctcagtgaaagtg
gagctgtcttatgtaattgctgacaagccacttgccacactcaaccccttgtgggaggaa
gcaagtaggcaagcaaatacgggatctggccagctgcttttgggtgccagcaggagcaaa
ctctatgcaggccccatggcagcatccaagtggggctacctaagacccctgaagcccaag
aggacatgttacagtgctatttcagctctgccagccacgttcggcttaagtgttaacagt
tcagtgggccctttgcctcatcacatgaggcggctgccctccaccaccaacggcaaaggg
ccagtgtga

>gi568815577f:25641599_25869229|GENSCAN_predicted_peptide_7|249_aa
MRLKRKTHFLGKDSSPSQLQKFANHQDNGENISEEFQRSSEQPLLLQAQRPRREKWFNGP
GAEKTRVELWKPPLRFQRIYGNAWIFRQNSVAGEESSWRTSTRAMQRENVGLEPPHRVPT
GALPSGAVRRGPPSSRPQNGKSTDSLHCAPGKATGTQCQPVKAAVGVEPCKATGVELPKA
MGAHLLHQHALNVRHGVKEYYFGTLRFNECPVRFWTCMGPVAPLILAISPIWNGNICTMP
VPPLCLGNN

>gi568815577f:25641599_25869229|GENSCAN_predicted_CDS_7|750_bp
atgaggttgaaaagaaaaacccattttctggggaaggattcaagtccaagccagctgcag
aaatttgccaatcaccaagacaatggggaaaatatctctgaggaatttcagagatcttca
gagcagcccctcctattacaggcccagaggcctaggagggaaaaatggtttaatgggcca
ggtgcagagaagacaagagttgagctttggaaacctccacttagatttcagaggatatat
ggaaatgcctggatatttaggcagaactctgttgcaggggaagagtcctcatggagaact
tctactagggcaatgcagagggaaaatgtggggttggagcccccacatagagtccccact
ggggcactgcctagtggagccgtgagaagaggaccaccgtcctccagaccccagaatggt
aaatccactgacagcttgcactgtgcacctggaaaagccacaggcactcaatgccagcct
gtgaaagcagctgtgggggtggaaccctgcaaagccacaggggtggagctgcccaaggcc
atgggagcccacctcttgcatcagcatgccctgaatgtgcgacatggagtcaaagaatat
tactttggaactttaagatttaatgagtgccctgtcaggttttggacttgcatggggcct
gtggcccctttgattttggcaatttctcccatttggaatgggaacatctgcacaatgcct
gtacccccattgtgtcttggaaataactaa

>gi568815577f:25641599_25869229|GENSCAN_predicted_peptide_8|161_aa
MTSPDTEFAGALILAVPDLQICKKVKNDFMTYEMDLEEWIEFAQEQMNACAGQGGLYFLE
YRKLAKYKCGEVPKRGKENRKKSTLHFEVVRICSGEESLEKLQTVVTEVEMPAIPVPSAI
VEAESPKSTSKGISGMTLFCRVGVMRGTGSCSFHLQAAFWG

>gi568815577f:25641599_25869229|GENSCAN_predicted_CDS_8|486_bp
atgacctcaccagacactgaatttgctggtgccttgatcttggcggtcccagacctccag
atctgtaagaaggtaaagaatgatttcatgacatatgagatggatcttgaagaatggatt
gaatttgcacaggaacaaatgaatgcctgtgcagggcagggaggactatatttcttggaa
tacagaaaattagcaaagtataaatgtggggaagtgcccaagagagggaaagagaacagg
aagaaatccactctgcactttgaggttgtcagaatctgttcaggagaggagtcattagag
aagctgcagactgttgtgacagaggttgagatgcctgctattccagttccaagtgcaata
gtggaggcagaaagtcctaaatccacaagtaaagggattagtgggatgactcttttttgt
cgtgttggtgtcatgagggggactggcagttgttcgttccatctgcaagctgcattttgg
ggataa