GENSCAN 1.0	Date run:  3-Nov-116	Time: 00:22:26

Sequence gi568815576r:40670837_40919248 : 248412 bp : 43.44% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.03 PlyA -     35     30    6                              -0.45
 1.02 Term -   3007   2648  360  1  0   -7   48   516 0.513  32.64
 1.01 Init -   3304   3134  171  1  0   91   34    70 0.480   1.35
 1.00 Prom -   4971   4932   40                             -10.74

 2.00 Prom +   5429   5468   40                              -9.06
 2.01 Init +   8625   8898  274  2  1   98  109   178 0.899  17.55
 2.02 Term +  10113  11092  980  1  2  124   43  1675 0.999 158.83
 2.03 PlyA +  11223  11228    6                               1.05

 3.03 PlyA -  11664  11659    6                               1.05
 3.02 Term -  39058  39001   58  0  1   78   41    62 0.552  -2.34
 3.01 Init -  40200  40160   41  0  2   69  117    74 0.872   6.15
 3.00 Prom -  77335  77296   40                              -1.16

 4.07 PlyA -  78925  78920    6                               1.05
 4.06 Term - 100145  99998  148  1  1  103   53   142 0.883   9.57
 4.05 Intr - 103183 103101   83  1  2   88  105    19 0.987   2.04
 4.04 Intr - 106299 106204   96  0  0  106   96    76 0.978  10.41
 4.03 Intr - 106537 106392  146  2  2   59   84    86 0.997   5.30
 4.02 Intr - 108289 108173  117  2  0   76  111    40 0.949   5.54
 4.01 Init - 114275 114206   70  2  1  110   77    52 0.993   7.51
 4.00 Prom - 116725 116686   40                              -8.36

 5.19 PlyA - 117099 117094    6                               1.05
 5.18 Term - 118327 118074  254  2  2   38   54   162 0.422   3.60
 5.17 Intr - 121840 121689  152  0  2   96   92    11 0.397   2.11
 5.16 Intr - 123744 123678   67  1  1   76   74    55 0.496   0.86
 5.15 Intr - 128247 128187   61  0  1   83  110    12 0.040   1.21
 5.14 Intr - 148441 148359   83  2  2   -5   69   122 0.016   0.36
 5.13 Intr - 155830 155713  118  1  1   95   38    79 0.215   3.64
 5.12 Intr - 156393 156260  134  1  2   87  110    48 0.722   7.26
 5.11 Intr - 158838 158790   49  0  1   63   76    15 0.717  -3.95
 5.10 Intr - 160120 160004  117  1  0   68   61   154 0.842  11.36
 5.09 Intr - 161835 161733  103  2  1   47   75    81 0.996   2.88
 5.08 Intr - 164834 164724  111  1  0   63   99   119 0.998   9.99
 5.07 Intr - 165051 164967   85  1  1   91   94    80 0.999   7.78
 5.06 Intr - 169856 169790   67  2  1   92  101    79 0.992   8.08
 5.05 Intr - 174103 174003  101  2  2   44  107   118 0.907   9.13
 5.04 Intr - 177533 177458   76  2  1   76   66   101 0.886   5.79
 5.03 Intr - 180044 179987   58  1  1   58  115    43 0.083   2.89
 5.02 Intr - 185793 185595  199  1  1   44   78   187 0.610  11.71
 5.01 Init - 191158 190291  868  1  1   75   83   456 0.556  38.53
 5.00 Prom - 192723 192684   40                              -2.46

 6.00 Prom + 202160 202199   40                              -3.16
 6.01 Init + 210400 210448   49  0  1   77   58    40 0.789  -0.99
 6.02 Intr + 210934 211341  408  2  0   89   87   176 0.189  11.84
 6.03 Intr + 215477 215679  203  0  2   53   80   216 0.152  16.30
 6.04 Intr + 236751 236813   63  2  0  122  100    61 0.783   9.61
 6.05 Intr + 238286 238399  114  1  0   78  102    54 0.977   6.44
 6.06 Intr + 243403 243488   86  0  2  113   91    34 0.430   4.82

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init - 180043 179987   57  1  0   75  115    45 0.907   7.21


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815576r:40670837_40919248|GENSCAN_predicted_peptide_1|176_aa
MEKAGTYLDGGAKRVTISAPSDAPMFVMGVNHEKYGNSLKIISNASCTTSCLTPLAKNII
PAKPVGKVIPELNGKLTGVAFHVPTTNMLVMDLTCHLEKPAKYSDIKRMVKQALREILKG
ILGCTEHKVVSSDFDSDTHSSIFNAGAGIALNNDFVKLISWYDRVVNLMVHMASKE

>gi568815576r:40670837_40919248|GENSCAN_predicted_CDS_1|531_bp
atggagaaggctgggacttacttagatgggggagccaaaagagtcaccatctctgcccct
tctgatgcccccatgtttgtgatgggtgtgaatcatgagaagtatggaaacagcctcaag
attatcagcaatgcctcctgcaccaccagttgcttaacccccctggccaagaacatcatt
cctgccaagcctgtgggcaaagtcatccccgagctgaatgggaagctcactggcgtggcc
ttccacgtccccaccaccaacatgttggtcatggacctgacctgccatctggagaaacct
gccaaatacagtgacatcaagaggatggtgaagcaggcattgagggagatcctcaagggc
atcctgggctgtactgagcacaaggtcgtctcctctgactttgacagtgacacccattct
tccatcttcaatgctggggctggcattgccctcaacaatgactttgtcaagctcatttcc
tggtatgacagggtggtgaacctcatggtccacatggcctccaaggagtaa

>gi568815576r:40670837_40919248|GENSCAN_predicted_peptide_2|417_aa
MKKGVGRAVGLGGGSGCQATEEDPLPNCGACAPGQGGRRWRLPQPAWVEGSSARLWEQAT
GTGWMDLEASLLPTGPNASNTSDGPDNLTSAGSPPRTGSISYINIIMPSVFGTICLLGII
GNSTVIFAVVKKSKLHWCNNVPDIFIINLSVVDLLFLLGMPFMIHQLMGNGVWHFGETMC
TLITAMDANSQFTSTYILTAMAIDRYLATVHPISSTKFRKPSVATLVICLLWALSFISIT
PVWLYARLIPFPGGAVGCGIRLPNPDTDLYWFTLYQFFLAFALPFVVITAAYVRILQRMT
SSVAPASQRSIRLRTKRVTRTAIAICLVFFVCWAPYYVLQLTQLSISRPTLTFVYLYNAA
ISLGYANSCLNPFVYIVLCETFRKRLVLSVKPAAQGQLRAVSNAQTADEERTESKGT

>gi568815576r:40670837_40919248|GENSCAN_predicted_CDS_2|1254_bp
atgaagaagggagtggggagggcagttgggcttggaggcggcagcggctgccaggctacg
gaggaagacccccttcccaactgcggggcttgcgctccgggacaaggtggcaggcgctgg
aggctgccgcagcctgcgtgggtggaggggagctcagctcggttgtgggagcaggcgacc
ggcactggctggatggacctggaagcctcgctgctgcccactggtcccaacgccagcaac
acctctgatggccccgataacctcacttcggcaggatcacctcctcgcacggggagcatc
tcctacatcaacatcatcatgccttcggtgttcggcaccatctgcctcctgggcatcatc
gggaactccacggtcatcttcgcggtcgtgaagaagtccaagctgcactggtgcaacaac
gtccccgacatcttcatcatcaacctctcggtagtagatctcctctttctcctgggcatg
cccttcatgatccaccagctcatgggcaatggggtgtggcactttggggagaccatgtgc
accctcatcacggccatggatgccaatagtcagttcaccagcacctacatcctgaccgcc
atggccattgaccgctacctggccactgtccaccccatctcttccacgaagttccggaag
ccctctgtggccaccctggtgatctgcctcctgtgggccctctccttcatcagcatcacc
cctgtgtggctgtatgccagactcatccccttcccaggaggtgcagtgggctgcggcata
cgcctgcccaacccagacactgacctctactggttcaccctgtaccagtttttcctggcc
tttgccctgccttttgtggtcatcacagccgcatacgtgaggatcctgcagcgcatgacg
tcctcagtggcccccgcctcccagcgcagcatccggctgcggacaaagagggtgacccgc
acagccatcgccatctgtctggtcttctttgtgtgctgggcaccctactatgtgctacag
ctgacccagttgtccatcagccgcccgaccctcacctttgtctacttatacaatgcggcc
atcagcttgggctatgccaacagctgcctcaacccctttgtgtacatcgtgctctgtgag
acgttccgcaaacgcttggtcctgtcggtgaagcctgcagcccaggggcagcttcgcgct
gtcagcaacgctcagacggctgacgaggagaggacagaaagcaaaggcacctga

>gi568815576r:40670837_40919248|GENSCAN_predicted_peptide_3|32_aa
MWAFWSALLTLPARPCAYDLAVFKVPTSPDIL

>gi568815576r:40670837_40919248|GENSCAN_predicted_CDS_3|99_bp
atgtgggccttttggagtgccctgctgacactccctgcccggccctgtgcttatgacttg
gcagtgtttaaggttcctaccagccctgacatcctgtga

>gi568815576r:40670837_40919248|GENSCAN_predicted_peptide_4|219_aa
MPGLTEFDQAKNNSQIGQPSEPEGVVNVLLTTPLWVVNTRLKLQGAKFRNEDIVPTNYKG
IIDAFHQIIRDEGISALWNGTFPSLLLVFNPAIQFMFYEGLKRQLLKKRMKLSSLDVFII
GAVAKAIATTVTYPLQTVQSILRFGRHRLNPENRTLGSLRNILYLLHQRVRRFGIMGLYK
GLEAKLLQTVLTAALMFLVYEKLTAATFTVMGLKRAHQH

>gi568815576r:40670837_40919248|GENSCAN_predicted_CDS_4|660_bp
atgcctggcctaacagagtttgatcaagcaaagaacaattcgcaaattgggcagccctca
gaaccagaaggagtggttaatgtgttgctaacaactccactctgggtggtaaacaccaga
ctgaagcttcaaggagcaaaatttaggaatgaagacattgtaccaacaaactacaaaggt
atcattgatgcttttcatcagatcattcgcgatgaaggaatctcggctttatggaatggc
acatttccctcattgctgttggtcttcaatcctgccatccagttcatgttttatgaaggt
ttaaaacggcagcttttaaagaaacggatgaagctttcttccttggatgtgttcatcatt
ggtgcagtagccaaagcgattgccaccacggtgacctatcccctgcagacggtacagtca
attctgaggtttgggcgtcatagactaaacccagaaaacagaacattgggaagtcttcgg
aatattctctatcttcttcaccaacgagtaagacgttttggaataatgggactctacaaa
ggccttgaagccaaactgctgcagacagtcctcactgctgctctcatgttccttgtttat
gagaaactgacagctgccaccttcacagttatggggctgaagcgtgcacaccaacactga

>gi568815576r:40670837_40919248|GENSCAN_predicted_peptide_5|900_aa
MVDYYEVLGLQRYASPEDIKKAYHKVALKWHPDKNPENKEEAERKFKEVAEAYEVLSNDE
KRDIYDKYGTEGLNGGGSHFDDECEYGFTFHKPDDVFKEIFHERDPFSFHFFEDSLEDLL
NRPGSSYGNRNRDAGYFFSTASEYPIFEKFSSYDTGYTSQGSLGHEGLTSFSSLAFDNSG
MDNYISVTTSDKIVNGRNINTKKIIESDQEREAEDNGELTFFLVNSVANEEGFAKECSWR
TQSFNNYSPNSHSSKHVSQYTFVDNDEGGISWVTSNRDPPIFSAGVKEGAAPFCAVTPSQ
RLGLEPGRSPPSFAHHLPTMDPRKVNELRAFVKMCKQDPSVLHTEEMRFLREWVESMGGK
VPPATQKAKSEENTKEEKPDSKKVEEDLKADEPSSEESDLGLIVIFSTLAEIDKEGVIEP
DTDAPQEMGDENAEITEEMMDQANDKKVAAIEALNDGELQKAIDLFTDAIKLNPRLAILY
AKRASVFVKLQKPNAAIRDCDRAIEINPDSAQPYKWRGKAHRLLGHWEEAAHDLALACKL
DYDEDASAMLKEVQPRAQKIAEHRRKYERKREEREIKERIERVKKAREEHERAQREEEAR
RQSGAQYGSFPGGFPGGMPGNFPGGMPGMGGGMPGMAGMPGLNEILSDPEVLAAMQDPEV
MVAFQDVAQNPANMSKYQSNPKVMNLISKLSAKFGVWLGLRGAAPMASVLSYESLVHAVA
GAVGSVTAMTVFFPLDTARLRLQVDEKRKSKTTHMVLLEIIKEEGLLAPYRGWFPVISSL
CCSNFVYFYTFNSLKALWVKGQHSTTGKDLVVGFVAANFPEQVVDNLPADISSGIYYGWA
SAGSRDGQKMVVSIGWNPYYENTKKSMETHTMHTFKEHFYGEILSVAVVGYLRPEKNFDS

>gi568815576r:40670837_40919248|GENSCAN_predicted_CDS_5|2703_bp
atggtggattactatgaagttctaggactgcaaagatatgcttcacctgaggacattaaa
aaagcttatcataaagtggcacttaaatggcaccctgataaaaatccagaaaataaagaa
gaagcagagagaaaattcaaagaagtagctgaggcatacgaggtattatcaaatgatgag
aaacgggacatttatgataaatatggcacagaaggattaaacggaggtggaagtcatttt
gatgatgaatgtgagtacggcttcacattccataagccagatgatgtttttaaagaaatt
tttcatgaaagggatccattttcttttcacttctttgaagactcgcttgaggacctgtta
aatcgtccaggaagctcctatggaaacagaaacagagatgcaggatactttttctccact
gccagtgaatatccaatttttgagaaattttcttcatatgatacaggatatacatcacag
ggttcattggggcatgaaggccttacttctttctcttccctggcttttgataatagtggg
atggacaactacatatctgttacaacttcagacaaaatcgttaatggcagaaatattaat
acaaagaaaattattgaaagtgatcaagaaagagaagctgaagataatggagagttgaca
ttttttcttgtaaatagtgtggccaatgaagagggctttgcaaaagaatgcagctggaga
acacagtcattcaacaactattcaccaaattctcacagctccaaacatgtatctcaatat
actttcgtggacaatgatgagggaggtatatcttgggttaccagcaacagagatccccct
attttctcagcaggagtcaaagagggtgccgcccccttctgcgcggtcacgccgagccag
cgcctgggcctggaaccgggccgtagcccccccagtttcgcccaccacctccctaccatg
gacccccgcaaagtgaacgagcttcgggcctttgtgaaaatgtgtaagcaggatccgagc
gttctgcacaccgaggaaatgcgcttcctgagggagtgggtggagagcatgggtggtaaa
gtaccacctgctactcagaaagctaaatcagaagaaaataccaaggaagaaaaacctgat
agtaagaaggtggaggaagacttaaaggcagacgaaccatcaagtgaggaaagtgatcta
ggtcttattgtcattttctcgactttggcagaaattgataaagaaggtgtgattgaacca
gacactgatgctcctcaagaaatgggagatgaaaatgcggagataacggaggagatgatg
gatcaggcaaatgataaaaaagtggctgctattgaagccctaaatgatggtgaactccag
aaagccattgacttattcacagatgccatcaagctgaatcctcgcttggccattttgtat
gccaagagggccagtgtcttcgtcaaattacagaagccaaatgctgccatccgagactgt
gacagagccattgaaataaatcctgattcagctcagccttacaagtggcgggggaaagca
cacagacttctaggccactgggaagaagcagcccatgatcttgcccttgcctgtaaattg
gattatgatgaagatgctagtgcaatgctgaaagaagttcaacctagggcacagaaaatt
gcagaacatcggagaaagtatgagcgaaaacgtgaagagcgagagatcaaagaaagaata
gaacgagttaagaaggctcgagaagagcatgagagagcccagagggaggaagaagccaga
cgacagtcaggagctcagtatggctcttttccaggtggctttcctgggggaatgcctggt
aattttcccggaggaatgcctggaatgggagggggcatgcctggaatggctggaatgcct
ggactcaatgaaattcttagtgatccagaggttcttgcagccatgcaggatccagaagtt
atggtggctttccaggatgtggctcagaacccagcaaatatgtcaaaataccagagcaac
ccaaaggttatgaatctcatcagtaaattgtcagccaaatttggagtgtggctgggtctt
cgaggagccgcaccaatggcttccgtgctgtcctacgaaagcctggtccacgccgtggcc
ggagccgtgggaagcgtgacagcaatgacagtgttttttcccctggatacagctagactt
cgacttcaggttgatgagaaaagaaaatccaaaactacacacatggtgctcctggagatc
attaaagaagaaggactcctggcaccatatcgagggtggtttccagtgatttccagtctc
tgctgctccaattttgtctatttctacacttttaatagcctcaaagcactctgggtcaaa
ggtcaacattctaccactggaaaagatctggtagttgggtttgttgcagctaattttcct
gagcaagtggtagataatctgccagccgatatatccagtggcatttattatggttgggcc
agtgctggaagtagagatggtcagaagatggtggtgagcataggatggaacccatactat
gagaatacgaagaagtccatggaaacacataccatgcataccttcaaagagcacttctat
ggggaaatcctgagtgtggccgttgttggctacctcagaccagaaaagaactttgattca
tga

>gi568815576r:40670837_40919248|GENSCAN_predicted_peptide_6|308_aa
MRFYHVGRAGLELLTSGEVTPGLSQVEYALRRHKLMSLIQKEAQGQSGTDQTVVVLSNPT
YYMSNDIPYTFHQDNNFLYLCGFQEPDSILVLQSLPGKQLPSHKAILFVPRRDPSRELWD
GPRSGTDGAIALTGVDEAYTLEEFQHLLPKMKAETNMVWYDWMRPSHAQLHSDYMQPLTE
AKAKSKNKVRGVQQLIQRLRLIKSPAEIERMQIAGKLTSQAFIETMFTSKAPVEEAFLYA
KFEFECRARGADILAYPPVVAGGNRSNTLHYVKNNQLIKDGEMVLLDGGCESSCYVSDIT
RTWPVNGS

>gi568815576r:40670837_40919248|GENSCAN_predicted_CDS_6|924_bp
atgaggttttaccatgttggccgggctggtcttgaactcctgacctcaggggaggtaact
ccaggactatctcaggtggaatatgcacttcgcagacacaaactaatgtctctgatccag
aaggaagctcaagggcagagtgggacagaccagacagtggttgtgctctccaaccctaca
tactacatgagcaacgatattccctatactttccaccaagacaacaatttcctgtaccta
tgtggattccaagagcctgatagcattcttgtccttcagagcctccctggcaaacaatta
ccatcacacaaagccatactttttgtgcctcggcgagatcccagtcgagaactttgggat
ggtccgcgatctggcactgatggagcaatagctctaactggagtagacgaagcctatacg
ctagaagaatttcaacatcttctaccaaaaatgaaagctgagacgaacatggtttggtat
gactggatgaggccctcacatgcacagcttcactctgactatatgcagcccctgactgag
gccaaagccaagagcaagaacaaggttcggggtgttcagcagctgatacagcgcctccgg
ctgatcaagtctcctgcagaaattgaacgaatgcagattgctgggaagctgacatcacag
gctttcatagaaaccatgttcaccagtaaagcccctgtggaagaagcctttctttatgct
aagtttgaatttgaatgccgggctcgtggcgcagacattttagcctatccacctgtggtg
gctggtggtaatcggtcaaacactttgcactatgtgaaaaataatcaactcatcaaggat
ggggaaatggtgcttctggatggaggttgtgagtcttcctgctatgtgagtgacatcaca
cgtacgtggccagtcaatggcagn