GENSCAN 1.0	Date run:  8-Nov-116	Time: 11:04:05

Sequence gi568815576f:39775296_39976112 : 200817 bp : 40.99% C+G : Isochore 1 ( 0 - 43 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +  24486  24640  155  2  2   84   71   119 0.111   7.31
 1.02 Intr +  30997  31094   98  1  2   72   93    31 0.057   0.73
 1.03 Intr +  35680  35760   81  2  0   99   50   112 0.294   7.19
 1.04 Intr +  35987  36027   41  0  2   41   42    41 0.105  -8.18
 1.05 Term +  37279  37413  135  0  0   58   37   188 0.758   7.74
 1.06 PlyA +  39381  39386    6                               1.05

 2.05 PlyA -  40882  40877    6                               1.05
 2.04 Term -  45108  45077   32  1  2   75   54    26 0.309  -5.06
 2.03 Intr -  45818  45698  121  2  1   98   99   104 0.697  11.65
 2.02 Intr -  57535  57398  138  1  0  100   33    73 0.365   2.74
 2.01 Init -  60598  60545   54  1  0   45  107    22 0.762   1.13
 2.00 Prom -  66149  66110   40                              -6.15

 3.02 PlyA -  66318  66313    6                               1.05
 3.01 Sngl -  67202  66546  657  2  0   65   43   365 0.912  25.62
 3.00 Prom -  71322  71283   40                              -6.75

 4.05 PlyA -  71786  71781    6                               1.05
 4.04 Term -  74663  74520  144  2  0   34   45   155 0.557   2.73
 4.03 Intr -  83869  83708  162  1  0   12   86   146 0.534   6.05
 4.02 Intr -  86712  86435  278  1  2   62   69   146 0.812   6.41
 4.01 Init -  88338  88329   10  0  1   99  115     2 0.929   4.65
 4.00 Prom -  97837  97798   40                              -8.05

 5.00 Prom +  98790  98829   40                              -4.25
 5.01 Sngl +  99969 100820  852  2  0   26   44   865 0.576  71.44
 5.02 PlyA + 100957 100962    6                               1.05

 6.00 Prom + 101542 101581   40                              -6.05
 6.01 Init + 102863 103037  175  1  1   72   39   156 0.039   8.66
 6.02 Intr + 118038 118112   75  1  0   51   53   119 0.890   3.27
 6.03 Intr + 118449 118595  147  1  0   90  115    58 0.905   7.99
 6.04 Intr + 120699 120791   93  1  0   59   77    51 0.487   0.12
 6.05 Term + 121941 122050  110  1  2  107   37    68 0.702   1.29
 6.06 PlyA + 122053 122058    6                               1.05

 7.04 PlyA - 122067 122062    6                               1.05
 7.03 Term - 132195 132029  167  1  2   47   45   103 0.632  -1.00
 7.02 Intr - 132740 132534  207  0  0  -12   83   150 0.453   2.63
 7.01 Init - 135644 135587   58  2  1   75  111    16 0.591   4.18
 7.00 Prom - 141821 141782   40                              -4.25

 8.07 PlyA - 142914 142909    6                               1.05
 8.06 Term - 153958 153863   96  1  0  138   49    44 0.762   2.49
 8.05 Intr - 155895 155737  159  0  0   85   44    76 0.463   2.16
 8.04 Intr - 157746 157701   46  2  1  111   82    50 0.647   4.19
 8.03 Intr - 163503 163423   81  2  0  109   62   115 0.764   8.83
 8.02 Intr - 173820 173389  432  2  0  -34   60   302 0.017   7.03
 8.01 Init - 174508 174453   56  1  2   79    1    67 0.030  -2.09
 8.00 Prom - 174848 174809   40                              -6.45

 9.00 Prom + 175023 175062   40                              -5.05
 9.01 Init + 180284 180343   60  1  0   71   92    72 0.932   7.20
 9.02 Intr + 180524 180615   92  1  2   86  108    58 0.923   5.47
 9.03 Intr + 182189 182356  168  2  0   59   94    52 0.512   1.04
 9.04 Intr + 184387 184454   68  1  2  101   73    78 0.337   5.23
 9.05 Intr + 184760 184879  120  0  0  116   84    50 0.304   6.95
 9.06 Term + 185125 185282  158  2  2   85   35    53 0.206  -3.19
 9.07 PlyA + 186555 186560    6                               1.05

10.00 Prom + 188833 188872   40                              -8.15
10.01 Init + 189080 189245  166  1  1   94   44   319 0.851  27.94
10.02 Intr + 190821 190996  176  1  2   33   55    91 0.678  -0.96
10.03 Intr + 192747 192977  231  2  0   81   70   270 0.646  21.55
10.04 Intr + 194116 194238  123  0  0  106   39    88 0.324   5.56
10.05 Term + 195610 195789  180  0  0   82   37   127 0.250   3.63
10.06 PlyA + 197843 197848    6                               1.05


Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term -  23367  23245  123  0  0   54   46   120 0.832   1.80
S.002 Init -  28032  27961   72  0  0   66   96    80 0.862   7.72
S.003 Init + 171495 171848  354  2  0   78   94   175 0.849  14.28


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815576f:39775296_39976112|GENSCAN_predicted_peptide_1|169_aa
MTWAAFGCLLSLSLGTLSLLLGPTVAHCCNLLGSWGLEDSQDVEMQGLLGPRLSLANVNN
QVSTRDEESSTKFQKTALLVGNLAEQHTGYHIDDTVLSGLMQEVASTLDATFLSEDQSKQ
KALQQSFQWFFSGPCSKDDLNRQGLNNMTAPHQGDLAATDAEHPECPEW

>gi568815576f:39775296_39976112|GENSCAN_predicted_CDS_1|510_bp
atgacctgggcagcattcggttgtctcctgtctctatcactggggaccctgtcacttctg
ctgggtccaacagtggcacactgctgcaaccttctgggtagttgggggttggaggactcc
caggatgtggagatgcaggggctgttaggtcccagactctctttagctaatgttaacaat
caagtgtcaactagggatgaggaaagttctacaaaatttcaaaagacagccctgctggtg
gggaacctcgctgagcaacacactggctatcacattgatgatacagtgctaagtggactt
atgcaagaagtggcaagcactcttgatgctacatttttgagtgaggaccaaagcaaacaa
aaggccctgcagcagtcattccagtggttcttcagtgggccatgtagcaaggatgacctc
aacaggcaggggctcaacaacatgactgctcctcaccaaggtgacctggctgccacagat
gcggagcatccagaatgcccggagtggtag

>gi568815576f:39775296_39976112|GENSCAN_predicted_peptide_2|114_aa
MLSQETLPLKIHGWKSTEDKASTDTPTHSHTHLPVQKSSVSPRGPFSFLLILMSFLYSTS
WVDLDLMTFLDDDPELPLLATPPSIVSPITCLSEAEEVCNLSGAESRMEDLLPP

>gi568815576f:39775296_39976112|GENSCAN_predicted_CDS_2|345_bp
atgttgtcccaggaaacacttccactcaagattcatggttggaaatcaacagaggataaa
gccagcaccgacacccctactcactctcacacacatttaccagttcaaaagagctctgtg
tctccccgggggcctttcagttttcttctcattttgatgtcgttcctttatagtacctcc
tgggttgatcttgacctgatgacatttttggatgatgatccagagctgcctttactagca
acacctccttccattgtctctccaatcacttgcttgtcagaagcagaagaagtttgtaat
ctttcgggtgcagaaagtagaatggaagatcttctgccaccatga

>gi568815576f:39775296_39976112|GENSCAN_predicted_peptide_3|218_aa
MEDEMNEMKREGKSREKRIKRNEQSLQEIWDYVKRPNLRLIGVPESDGENGTKLENTLQD
IIQENFPNLARQADVQIQEIQRTPQRYSSRRATPRHIIVRFTKVEMKEKMLRAAREKGWV
TLKGKPIRLTADLSAETLQARREWGPIFNILKEKNFQPRNSYPAKLSFISEGEIKYFTDK
QMLRDFVTTRPALKELLKEALNMERNNQYQPLQNHAKM

>gi568815576f:39775296_39976112|GENSCAN_predicted_CDS_3|657_bp
atggaagatgaaatgaatgaaatgaagcgagaagggaagtctagagaaaaaagaataaaa
agaaatgagcaaagcctccaagaaatatgggactatgtgaaaagaccaaatctacgtctg
attggtgtacctgaaagtgacggggagaatggaaccaagttggaaaacactctgcaggat
attatccaggagaacttccccaatctagcaaggcaggccgacgttcagattcaggaaata
cagagaacaccacaaagatactcctcgagaagagcaactccaagacacataattgtcaga
ttcaccaaagttgaaatgaaggaaaaaatgttaagggcagccagagagaaaggttgggtt
accctcaaagggaagcccatcagactaacagcagatctctcggcagaaaccctacaagcc
agaagagagtgggggccaatattcaacattcttaaagaaaagaattttcaacccagaaat
tcatatccagccaaactaagcttcataagtgaaggagaaataaaatactttacagacaag
caaatgctgagagattttgtcaccaccaggcctgccctaaaagagctcctgaaggaagca
ctaaacatggaaaggaacaaccagtaccagccgctgcaaaatcatgccaaaatgtaa

>gi568815576f:39775296_39976112|GENSCAN_predicted_peptide_4|197_aa
MEKGYYIREKSKQVITLLMDEPLLCKEREVACRTRQRTSHSILFSKRQLGSSNSLTACTS
APTPDISASEKKYKLPKFGRLHNKSTYNEHWPKMQQTEREEETAEENLEASRGGFMRFKE
SNCHHNTQVQSEAASTDGEAVASYPEDLAKNKVEEKDISSPCYVSFVVEVLAITVKQARE
IKNVSIKMEETSIICKR

>gi568815576f:39775296_39976112|GENSCAN_predicted_CDS_4|594_bp
atggagaaaggttattatatccgggaaaaatctaagcaagtcatcacattgctgatggat
gaaccattgctgtgtaaagagagggaagtggcatgtcggactagacagcgtacctcccac
tctatattgttttctaaaagacaacttggttcaagtaactcactgacagcgtgcacttct
gcccccacaccggatatttctgcttcagagaagaagtataagcttcctaagtttggaagg
ttacataataaaagtacgtataatgaacattggcctaaaatgcaacagactgagagagaa
gaggaaactgcagaagaaaatcttgaagctagcagaggtgggttcatgaggttcaaggaa
agcaactgtcaccataacacacaagtacaaagtgaagcagcaagtactgatggagaagct
gtagcaagttatccagaagatctagctaagaataaggtggaagaaaaggacatcagttct
ccttgctacgtcagctttgtagtggaggtcctagccatcacagtaaaacaagcaagagaa
attaaaaatgtcagtatcaaaatggaagaaacgagcatcatttgtaaacgatag

>gi568815576f:39775296_39976112|GENSCAN_predicted_peptide_5|283_aa
MQQIYTVKEIRSVAARSGPFAPVLSATSRGVAGALRPLVQATVPATPEQPVLDLKRPFLS
RESLSGQAVRRPLVASVGLNVPASVCYSHTDVKVPDFSEYRRLEVLDSTKSSRESTEARK
GFSYLVTGVTTVGVAYAAKNAVTQFVSSMSASADVLALAKIEIKLSDIPEGKNMAFKWRG
KPLFVRHRTQKEIKQEAAVELSQLRDPQHDLDRVKKPEWVILIGVCTHLGCVPIANAGDF
GGYYCPCHGSHYDASGRIRLGPATLNLEVPTYEFTSDDMVIVG

>gi568815576f:39775296_39976112|GENSCAN_predicted_CDS_5|852_bp
atgcaacaaatctatacagttaaagaaattcggtcggtcgcagcccgctcgggcccgttc
gcgcccgtcctgtcggccacgtcccgcggggtggcgggcgcgctgcggcccttggtgcag
gccacggtgcccgccaccccggagcagcctgtgttggacctgaagcggcccttcctcagc
cgggagtcgctgagcggccaggccgtgcgccggcctttggtcgcctccgtgggcctcaat
gtccctgcttctgtttgttattcccacacagacgtcaaggtgcctgacttctctgaatac
cgccgccttgaagttttagatagtacgaagtcttcaagagaaagcaccgaggctaggaaa
ggtttctcctatttggtaactggagtaactactgtgggtgtcgcatatgctgccaagaat
gccgtcacccagttcgtttccagcatgagtgcttctgctgatgtgttggccctggcgaaa
atcgaaatcaagttatccgatattccagaaggcaagaacatggctttcaaatggagaggc
aaacccctgtttgtacgtcatagaacccagaaggaaattaagcaggaagctgcagttgaa
ttatcacagttgagggacccacagcatgatctagatcgagtaaagaaacctgaatgggtt
atcctgataggtgtttgcactcatcttggttgtgtacccattgcaaatgcaggagatttt
ggtggttattactgcccttgccatgggtcacactatgatgcatctggcaggatcagattg
ggtcctgctactctcaaccttgaagtccccacgtatgagttcaccagtgacgatatggtg
attgttggttag

>gi568815576f:39775296_39976112|GENSCAN_predicted_peptide_6|199_aa
MKNAFGRLSGRLDTAEERIFELEDISIETTKTEKQREKPNDNNNNKNRISKNYGTTIKGP
FLGILVFIHTTPTSDDDCVPDEPGYSTYSSQAQGPRPVPTSASSLSGLVQFLSGRQARWL
QIPELEGTKGNEALSPTPRTNLWSLILSSISNSVTSGLVMFGEGSQAMNLGVTLTPVFVS
YSSHDIHELTFEIQGGYPV

>gi568815576f:39775296_39976112|GENSCAN_predicted_CDS_6|600_bp
atgaagaatgcctttggcaggctttctgggagactggacacagctgaggaaagaatcttt
gagctggaggacatctcaatagaaaccactaaaactgaaaagcaaagagaaaaaccgaat
gacaacaacaataacaagaacagaatatccaagaactatgggacaactataaaagggcct
ttcctcggcatcctcgtcttcattcatacaacccccacttcagatgacgactgtgtacca
gatgagccaggatattccacctactccagccaggctcaagggcccaggccggtccccact
tccgcttcctcactttctggcctggtgcagttcctgtcagggcgtcaagcaagatggttg
cagatacctgagctggagggtaccaaggggaatgaagctctttcccctactccaaggacc
aatctttggtccttgattttaagctctatcagcaactcagtcacaagtggacttgttatg
tttggagaaggttctcaggccatgaacctgggagtcaccttaactcctgtgtttgtctct
tatagctctcatgatatccatgagcttacctttgaaatacaaggtggctacccagtctag

>gi568815576f:39775296_39976112|GENSCAN_predicted_peptide_7|143_aa
MKFWPFRGQRSIMRLAAPAALVEPEFSFPEAHRGLLHLQNPVFGPVLWKGPSLQRDRLGA
TSRQTLANYLEQVPETLQALLFPLCRMRVNEPVRQLFLKLHQDQCTITLEKDNFSYSGYM
GGHQVIYDGWTPEFPTEILYKVA

>gi568815576f:39775296_39976112|GENSCAN_predicted_CDS_7|432_bp
atgaagttctggccctttagaggccagagatccatcatgagattagctgcaccagcagct
ctggtagagccagaattcagctttccagaagcccatcgagggctcctgcatctccagaat
cctgtgtttggaccagtgttgtggaaggggcccagcctacagcgtgacaggcttggtgct
acgtcccggcagacattagcaaattaccttgagcaagtcccggaaactctccaagccttg
cttttcccactctgcagaatgagagtcaatgagcctgtacgacaactctttttaaagctc
catcaggatcagtgtacaataactctagagaaagacaatttttcctattcaggatatatg
ggtggacaccaggtgatttatgatggatggacaccagaatttcccacggaaattctgtac
aaagttgcgtag

>gi568815576f:39775296_39976112|GENSCAN_predicted_peptide_8|289_aa
MDDPDNAGHHLLGVYVGTGGWSSCGDIQQTIGSLGLEFKSKARARTRATDLRVFGTEVIV
AAEEVDEVAQSEKKNQKAKGSTFREVYISGSREEKECLEMRPVGVVRKGGEEPGEGGAAK
AREKGASRRGPVSSVNPTDISIGSLYYTLRRSLVNFKRMLQGGCVPRITIHPLAASLFLK
AANRAVSDDRGLEVIYPLLSAAAIWEYPYALCIRSTNISCAPLCVKPCVEHEDPVWTRQP
ILRPQTVQSCRKNKSAKPEIAKIVQRSPVLFTPLPLMGTSYITIVQYQS

>gi568815576f:39775296_39976112|GENSCAN_predicted_CDS_8|870_bp
atggatgatcccgataatgcgggccaccatttattgggcgtctacgttgggacagggggc
tggagttcatgtggggacatccagcagacaattggaagtctgggtctggagttcaagagc
aaggccagagctagaacacgagccacagacttgagggtctttggcacagaggtgatagtt
gcagctgaagaagtggatgaggtggctcagagtgagaagaaaaatcagaaagccaaaggc
agcaccttcagggaagtgtatatttcaggatcaagagaggaaaaagaatgcttggaaatg
agacctgtaggagtggtcaggaagggaggagaagaacccggagagggtggtgctgccaaa
gccagggagaaaggggcttccaggagagggccagttagcagtgtcaatcccacagacatt
tccatagggtcattatactacacattaaggagatcactggtgaacttcaagagaatgttg
cagggagggtgtgttccccgaataacgattcatcctctggctgcttcgctttttctgaaa
gccgccaacagagctgtctccgatgacaggggacttgaagttatctaccccttgctcagt
gctgccgccatctgggagtatccatatgctttgtgtattcgttcaacaaacatttcctgt
gccccactctgtgtcaagccctgtgtagagcatgaagatccagtgtggactagacagccc
atcttaagacctcagacagttcagtcttgtaggaaaaacaagtcagccaaaccagaaatt
gcaaaaatagtacagaggtcccctgtactcttcaccccacttcccctaatggggacatct
tacatcaccatagtacagtatcaaagctag

>gi568815576f:39775296_39976112|GENSCAN_predicted_peptide_9|221_aa
MSGRHKWTEITWGQEKLTPKILSNQEEWFKAELGSQEGYVPKNFIDIQFPNWLEGTVTAS
SRNSPLSLFHVNLLSLSAGSFLSANTHAAISPNLPKHKQTKPNPEASASSVLAALVYLFR
SCRQAAASCNGFTKASLDTRQRTYSWARRLASSSSGPARAPQGTSPSLSAQVLLEGQDFP
LLHLYAFNSVLHKRETLSEYLWKEGGIGGGELPLVQIHLGV

>gi568815576f:39775296_39976112|GENSCAN_predicted_CDS_9|666_bp
atgagtggacggcacaagtggacagaaataacctggggtcaggagaagctgactccaaag
attttaagtaaccaagaggagtggtttaaggcggagcttgggagccaggaaggatatgtg
cccaagaatttcatagacatccagtttcccaactggctggaaggaactgtcactgcttct
agcagaaattctcctctctctctcttccacgtcaacctcctttccctctctgctggatca
ttcctgtcagcaaacacacacgctgcaatttctcccaacttaccaaaacacaaacaaaca
aaaccaaacccagaggccagtgcatcctctgtcctcgcagctctggtctatctcttccgc
agctgccggcaggcggctgcttcctgcaatggtttcacgaaggcctctctcgacaccagg
cagagaacttactcatgggcaaggaggttggcttcttcatcatccgggccagccagagct
ccccaggggacttctccatctctgtcagcccaggtgcttctggaagggcaggattttcct
ctacttcatctttatgcctttaacagtgtcttgcataaaagagagacactcagtgagtat
ttgtggaaggaaggagggataggaggaggagaactcccacttgtccagatccatctgggg
gtttaa

>gi568815576f:39775296_39976112|GENSCAN_predicted_peptide_10|291_aa
MSSHEGGKKKALKQPKKQAKEMDEEEKAFKQKQKEEQKKLEVLKAKVVGKGPLATDRSRS
SLETEPEKTRYAPDPVDPNLEILGSLSSHMNHQEKCIGWVDPLSILKDRAQSSEGHRGNS
LDRRSQGGPHLSGAVGEEIRPSMNRKLSDHPPTLPLQQHQHQPQPPQYAPAPQQLQQPPQ
QRYLQHHHFHQERRGGSLDINDGHCGTGLGSEMNAALMHRRHTDPVQLQAAGRVRWARAL
YDFEALEDDELGFHSGEVVEVLDSSNPSWWTGRLHNKLGLFPANYVAPMTR

>gi568815576f:39775296_39976112|GENSCAN_predicted_CDS_10|876_bp
atgtccagccacgaaggtggcaagaagaaggcactgaaacagcccaagaagcaggccaag
gagatggacgaggaagagaaggctttcaagcagaaacaaaaagaggagcagaagaaactc
gaggtgctaaaagcgaaggtcgtggggaaggggcctctggccacagacagaagcagatct
tccttagagacagaacccgagaagaccaggtatgctccagatccagtcgaccccaatcta
gagattttaggcagcctgagttctcacatgaaccaccaggaaaaatgcataggatgggta
gatcctctgagtatactgaaagacagagctcagagctctgagggtcaccggggcaacagc
ctggaccggaggtcccagggaggcccacacctcagtggggctgtgggagaagaaatccga
ccttcgatgaaccggaagctgtcggatcaccccccgacccttcccctgcagcagcaccag
caccagccacagcctccgcaatatgccccagcgccccagcagctgcagcagcccccacag
cagcgatatctgcagcaccaccatttccaccaggaacgccgaggaggcagccttgacata
aatgatgggcattgtggcaccggcttgggcagtgaaatgaatgcggccctcatgcatcgg
agacacacagacccagtgcagctccaggcggcagggcgagtgcggtgggcccgggcgctg
tatgactttgaggccctggaggatgacgagctggggttccacagcggggaggtggtggag
gtcctggatagctccaacccatcctggtggaccggccgcctgcacaacaagctgggcctc
ttccctgccaactacgtggcacccatgacccgataa