GENSCAN 1.0 Date run: 3-Nov-116 Time: 21:00:03 Sequence gi568815575r:92013245_92214461 : 201217 bp : 37.09% C+G : Isochore 1 ( 0 - 43 C+G%) Parameter matrix: HumanIso.smat Predicted genes/exons: Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr.. ----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------ 1.01 Sngl + 17 925 909 1 0 60 35 283 0.993 16.21 1.02 PlyA + 944 949 6 -0.45 2.00 Prom + 1319 1358 40 -3.65 2.01 Init + 6575 6758 184 1 1 74 73 131 0.690 9.53 2.02 Term + 24758 25044 287 0 2 62 49 231 0.025 11.18 2.03 PlyA + 25693 25698 6 1.05 3.00 Prom + 42909 42948 40 -4.25 3.01 Init + 51672 51783 112 2 1 89 35 101 0.841 5.33 3.02 Intr + 58204 58271 68 2 2 96 78 -2 0.812 -2.69 3.03 Term + 58801 59064 264 0 0 118 46 182 0.888 11.52 3.04 PlyA + 60278 60283 6 1.05 4.04 PlyA - 60760 60755 6 1.05 4.03 Term - 62081 61949 133 1 1 95 50 75 0.220 0.98 4.02 Intr - 73774 73713 62 1 2 75 105 73 0.168 4.31 4.01 Init - 90257 90186 72 2 0 31 98 67 0.022 3.12 4.00 Prom - 90804 90765 40 -3.95 5.02 PlyA - 92255 92250 6 1.05 5.01 Sngl - 100971 99907 1065 0 0 91 42 1171 0.962 109.68 5.00 Prom - 120692 120653 40 -5.35 6.07 PlyA - 121381 121376 6 1.05 6.06 Term - 130351 130181 171 1 0 69 44 145 0.460 5.04 6.05 Intr - 135030 134484 547 2 1 22 71 202 0.299 3.86 6.04 Intr - 141918 141785 134 0 2 100 60 64 0.623 3.32 6.03 Intr - 148319 148176 144 2 0 31 91 66 0.014 0.76 6.02 Intr - 182394 182269 126 0 0 101 90 0 0.016 1.46 6.01 Init - 196896 196228 669 0 0 67 86 321 0.180 25.04 Suboptimal exons with probability > 0.800 Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr.. ----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------ Predicted peptide sequence(s): Predicted coding sequence(s): >gi568815575r:92013245_92214461|GENSCAN_predicted_peptide_1|302_aa MSELTFTIASKRIKYLGIQLTRDVKDLFEENYKPLLNEIKEDTNKWKNIPCSWVGRINIM KMAILPKVIYRFNAIPIKLPMTFFTELEKTTLKFIWNQKRACIDKSILSQKNKAGGITPP DFKLYYKATVTKTAWYWYQNRDIDPWNRTEPSEITPHIYNHLIFDKPDKNKKWGKDSLFN KWCWENWLAIRRKLKLDPFLTPYTKMNSRWIKDLNVRPKTIKNLEENLGNTIQDIGMGKD FMSKTPKAMATKAKIDIWDLIKLKNFCTAKETTIRVNRQPTEWEKIFAIYSSDKGLISRI YK >gi568815575r:92013245_92214461|GENSCAN_predicted_CDS_1|909_bp atgagtgaactcacattcacaattgcttcaaagagaataaaatacctaggaatccaactt acaagggatgtgaaggacctcttcgaagagaactacaaaccactgctcaatgaaataaaa gaggatacaaacaaatggaagaacattccatgttcatgggtaggaagaatcaatatcatg aaaatggccatactgcccaaggtaatttatagattcaatgccatccccatcaagctacca atgactttcttcacagaattggaaaaaactactttaaagttcatttggaaccaaaaaaga gcctgcattgacaagtcaatcctcagccaaaagaacaaagctggaggcatcacaccacct gacttcaaactatactacaaggctacagtaaccaaaacagcatggtattggtaccaaaac agagatatagacccatggaacagaacagagccctcagaaataacgccacacatctacaac catctgatctttgacaaacctgacaaaaacaagaaatggggaaaggattccctatttaat aaatggtgctgggaaaactggctagccatacgtagaaagctgaaactggatcccttcctt acaccttatacaaaaatgaattcaagatggattaaagacttaaatgttagacctaaaacc ataaaaaacctagaagaaaacctaggcaataccattcaggacataggcatgggcaaggac ttcatgtctaaaacaccaaaagcaatggcaacaaaagccaaaattgacatatgggatcta attaaactgaagaacttctgcacagcaaaagaaactaccatcagagtgaacaggcagcct acagaatgggagaaaatttttgcaatctactcatctgacaaagggctaatctccagaatc tacaaataa >gi568815575r:92013245_92214461|GENSCAN_predicted_peptide_2|156_aa MEKNHNSMQIQNLQVRYPGSVIRTDSAAGVVHGEEGRTVWFDGPPKSHMRQGSPQSQAKG GSCLVEEISKQQIIQDVTWVLLKAFSFIREGEHKSSENSEPDNVIEKKISFSEEKLKRAT EICTSNKEPNVNPQDKGVQGMLEVFMAAPLITGSEA >gi568815575r:92013245_92214461|GENSCAN_predicted_CDS_2|471_bp atggaaaagaaccataacagcatgcaaatccagaacctgcaagtgaggtatccaggttct gtcatcaggactgactcggcagctggcgtggtccatggagaggaaggaagaacagtgtgg tttgacggcccacccaagagccacatgaggcaggggagcccccaatcccaagccaaggga ggcagttgcctggtggaagaaatttctaagcagcaaatcattcaagatgtgacttgggtg ctgttaaaggcattcagttttataagggaaggagagcataaaagttcagaaaattcagag cctgacaatgtaatagaaaagaaaatctcattttctgaggagaaattaaagcgggctaca gaaatttgcacaagtaacaaggagcccaatgttaatccccaagacaaaggggtccagggc atgttagaggtcttcatggcagcccctctaatcacaggctcagaggcctag >gi568815575r:92013245_92214461|GENSCAN_predicted_peptide_3|147_aa MAFSIRDIGGALQDLRGKLQEAEGGPKELQDGFQKLTGLVPGASFSSYGDVTFSWMVLIF AEEPLPVASSTPVHGGFLPGHRLCSLKAQDLLHQPVVNAARLELTLYGNGLPLAKGMSRN AVQEPRRELRNPKRLLVALPHCGQAGT >gi568815575r:92013245_92214461|GENSCAN_predicted_CDS_3|444_bp atggccttcagcatcagggacattgggggtgcactccaggatctgaggggtaaactccag gaggctgagggtggacccaaggagctgcaggatggattccagaagcttacaggattggtc cctggtgcctcatttagttcatatggtgatgtcacattttcctggatggtattgatattt gcagaggagcctctccctgtggccagcagtacaccagtccatgggggatttcttccaggc caccgcttatgttcccttaaagcccaggacctcttgcatcagcctgtggtgaatgcagcc aggcttgaactcaccctttatggcaatggactccctctggccaagggcatgtctagaaat gctgtccaagagcctaggcgtgaactcaggaaccccaaaagactgcttgttgctctaccc cactgtggccaagctggtacctag >gi568815575r:92013245_92214461|GENSCAN_predicted_peptide_4|88_aa MLPDRLRSPVDHHGRRALGNSQWRVTNYGAQAVASQSGDASSIVCCGTLKSTCFQEPQMS FLNTKSFRDPLTYGNTMAGYYRIPIEAS >gi568815575r:92013245_92214461|GENSCAN_predicted_CDS_4|267_bp atgctgcccgatcgcctcagaagccccgtagaccatcacggacgccgagctttaggtaac tcacagtggagggttaccaactatggagctcaggctgttgcttcccagtctggtgatgct tcctccatagtctgctgtggaaccttgaaatcaacatgctttcaagagcctcagatgagc ttcctgaacactaaaagtttcagagacccactgacctacggaaataccatggctggttat tatagaattccaatagaggcctcgtga >gi568815575r:92013245_92214461|GENSCAN_predicted_peptide_5|354_aa MATFAISILQQIALDLKATQALVLAPTRELAQQIQKVVMALVDYMGASCHACIRGTNVRA EVQKLQMEAPHIIVGTPSCVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQK LNSNTQVVLLSATMPSDVLEVIKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDT LCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVITREFRSGS SRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRISRGGQFGRKDVAINMVTEEDKR TLRDIETFYNTSIEEMPPMLLTSSEGLSCHPAPARAQSRGAEEQQERGRKGAKG >gi568815575r:92013245_92214461|GENSCAN_predicted_CDS_5|1065_bp atggccacatttgccatatcgattctgcagcagattgcattagatctaaaagccacccag gccttggtcctagcacccactcgagaattggctcagcagatacagaaggtggtcatggca ctagtagactacatgggtgcctcctgtcatgcctgtatcaggggcaccaatgtgcgtgct gaggtgcagaaactgcagatggaagctccccacatcatcgtgggtacccctagctgtgtg tttgatatgcttaaccggagatacctatctcccaaatacatcaagatgtttgtactggat gaagctgacgaaatgttaagccgtggattcaaggaccagatctatgacatattccaaaag ctcaacagcaacacccaggtagttttgctgtcagctacaatgccttctgatgtgcttgag gtgatcaagaagttcatgagggaccccattcggattcttgtcaagaaggaagagttgacc ctggagggtatccgccaattctacatcaacgtggaacgagaggagtggaagctggacaca ctatgtgacttgtatgaaaccctgaccatcacccaggcagtcatcttcatcaatacccgg aggaaggtggactggctcaccgagaagatgcatgctcgagatttcactgtctccgccatg catggagatatggaccaaaaggagcgagacgtgatcacgagggagtttcgttctggctct agcagagttttgattaccactgacctgctggccagaggcattgatgtgcagcaggtttct ttagtcatcaactatgaccttcccaccaacagggaaaactatatccacagaatcagtcga ggtggacagtttggccgtaaagatgtggctattaacatggtgacagaagaagacaagagg actcttcgagacattgagaccttctacaacacctccattgaggaaatgcccccaatgttg ctgacctcatctgaggggctgtcctgccacccagccccagccagggctcaatctcggggg gctgaggagcagcaggagaggggaaggaagggagccaagggatag >gi568815575r:92013245_92214461|GENSCAN_predicted_peptide_6|596_aa MPRRHFSDLHGSPSHHRPEGLGEKNRFMSHAQDPAALCSLRTWHPVSQLFQLQLWLKRAK VQLEPLLQQVQAPSLGSFHMVLSLQLHRGQEVRLGSLRLGFRGCMEKPQCPGRYLLHVMK PSWRTSTRAVQRGYVGLEPSHTVPTGVLPSEAVRRGPLFSRPQNGRSTESLPCAPRKATG TQCQPMKTAKKAVRCKAAGVGMPKDLGAHPLHQCGLDVRHGIKDNCHHQSYNDEILRKIV LGYFIGMSNIFQTNLSPSEVVCQHKRPRHSNTKSSKNTWEIHRKKIMSRHIVIMLSKVKV KERILRAVRKKHQGMRWGCGSLLQCPTVCSKESIQTGRLWGSDTTAVFSGAYLQLKPRLQ PEQDSVSKKKKGRERDREREKERKKERKKERRKEGRKEGRKEGRKKKERKKERKKERKKE RKKERKKERKEGRKEGKEGKEGRKERKRKKERKKGRKEGRKGKKERKEGREKGRKKGERE RKKRKEKEKERKEREKRKKKERKKERKKERKKGRKKRKEKKERSSVNEECDYMVGEKRSQ AEIPKPQFLTSVHPQAQHHVEAAKAWGFRPLKPQPKLYVGPFQPRLERLGHRAPSP >gi568815575r:92013245_92214461|GENSCAN_predicted_CDS_6|1791_bp atgcctcgaaggcatttcagcgaccttcatggaagtccctctcatcacagacctgaaggc ctgggagagaaaaatcgtttcatgagccatgcccaggaccctgctgctctgtgcagcctt aggacatggcaccctgtgtcccagctgttccagctccagttgtggctaaaaagggccaag gtacagcttgaacccttgcttcagcaggtgcaagccccaagccttggcagcttccacatg gtattgagcctgcagttacacagagggcaagaggtgaggcttgggagcctccgcctaggt ttcagaggatgtatggaaaaacctcaatgtccaggcagatatctgctgcatgtgatgaag ccctcatggagaacctctactagggcagtacagaggggatatgtggggttggagccctca cacacagtccccactggggtactgcctagtgaagctgtgagaagagggccactgttttcc agaccccagaatggcagatccactgaaagtttgccctgtgcacctagaaaagccacaggc actcaatgccagcccatgaaaacagccaaaaaggctgtacgctgcaaagctgcaggagtg gggatgcccaaggacttgggagcccatcccttgcatcagtgtggcctggatgtaagacat ggtataaaggataactgccatcatcaaagctacaatgatgagatcttgagaaaaatagtg ttgggttatttcataggcatgtccaatatttttcagactaatctgagtccctctgaagtg gtttgtcagcacaagagacctagacattcaaatacaaaaagctcaaagaacacctgggaa attcatcgcaaaaagatcatgtctaggcacattgtcatcatgttatcaaaagtcaaggtg aaggaaagaatcttaagagctgtgaggaaaaaacaccagggcatgcgatgggggtgtggc tctcttcttcagtgccccactgtatgctcaaaggagagcatacagacgggcaggctgtgg ggctctgacaccacggcagtgtttagcggtgcatatttacagctgaagccccgcctccag cctgagcaagactctgtctcaaaaaaaaaaaaaggaagggaaagagacagggaaagggag aaagaaagaaagaaagaaagaaagaaagaaagaaggaaggaaggaaggaaggaaggaagg aaggaaggaaggaaaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaa agaaagaaagaaagaaagaaagaaagaaaggaaggaaggaaggaagggaaagaaggaaag gaaggaaggaaggaaagaaaaagaaagaaagaaagaaagaaaggaaggaaggaaggaagg aagggaaagaaggaaaggaaggaaggaagagagaaaggaaggaagaaaggagaaagagag agaaagaaaaggaaagagaaagaaaaagaaagaaaggaaagagagaaaagaaaaaagaaa gaaagaaagaaagaaagaaagaaagaaagaaagaaaggaaggaagaaaagaaaggaaaag aaagaaagaagttcagtaaacgaggagtgtgactacatggtaggagagaaaaggtcacag gcagagattcccaaaccacaattcttgacatctgtgcacccacaggctcaacaccatgtg gaagctgccaaggcttggggcttccgccctctgaagccacagcccaagctctacgttggc ccctttcagccacgactagagaggttgggacacagggcaccaagtccctag