GENSCAN 1.0	Date run:  4-Nov-116	Time: 04:43:06

Sequence gi568815575r:52847950_53048588 : 200639 bp : 45.17% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.02 PlyA -     18     13    6                              -0.45
 1.01 Sngl -    415     83  333  1  0   81   43   217 0.502  12.52
 1.00 Prom -   4457   4418   40                              -1.96

 2.00 Prom +   7135   7174   40                              -2.06
 2.01 Sngl +  10940  11836  897  1  0   82   47   263 0.570  17.77
 2.02 PlyA +  12683  12688    6                               1.05

 3.00 Prom +  17663  17702   40                              -1.86
 3.01 Sngl +  30609  31679 1071  2  0   69   32   480 0.463  37.64
 3.02 PlyA +  31874  31879    6                               1.05

 4.00 Prom +  33388  33427   40                              -2.46
 4.01 Init +  46572  46734  163  2  1   62    9   148 0.353   4.19
 4.02 Intr +  49160  49275  116  0  2  109   60   123 0.416  11.77
 4.03 Term +  59160  59918  759  2  0   61   53   317 0.112  18.93
 4.04 PlyA +  60587  60592    6                               1.05

 5.06 PlyA -  60710  60705    6                               1.05
 5.05 Term -  62026  61917  110  2  2   54   42   139 0.233   4.57
 5.04 Intr -  68576  68446  131  1  2  109   72    66 0.249   7.44
 5.03 Intr -  79206  79118   89  0  2   35   19    91 0.001  -4.33
 5.02 Intr -  87020  86840  181  1  1   94   63    71 0.740   5.07
 5.01 Init -  87433  87105  329  1  2   66   84   145 0.501   6.70
 5.00 Prom -  89394  89355   40                              -1.36

 6.00 Prom +  89905  89944   40                              -6.66
 6.01 Init +  90337  90353   17  0  2   30   83    15 0.046  -4.96
 6.02 Intr +  91340  91470  131  2  2  109   72    66 0.065   7.44
 6.03 Term +  97890  97999  110  1  2   54   42   139 0.115   4.57
 6.04 PlyA +  99206  99211    6                               1.05

 7.04 PlyA -  99329  99324    6                               1.05
 7.03 Term - 100756  99998  759  1  0   61   53   317 0.112  18.93
 7.02 Intr - 110756 110641  116  0  2  109   60   123 0.416  11.77
 7.01 Init - 113344 113182  163  1  1   62    9   148 0.353   4.19
 7.00 Prom - 113871 113832   40                              -6.46

 8.00 Prom + 121296 121335   40                              -4.46
 8.01 Sngl + 123509 124006  498  1  0   60   48   168 0.751   6.05
 8.02 PlyA + 124050 124055    6                               1.05

 9.00 Prom + 124790 124829   40                              -2.46
 9.01 Init + 124914 125046  133  2  1   78   63    89 0.836   5.70
 9.02 Intr + 141554 141608   55  0  1   36   82    72 0.109  -0.56
 9.03 Intr + 142807 143113  307  1  1   42   89   164 0.956   8.35
 9.04 Intr + 143681 143782  102  1  0  117  110    -2 0.898   5.27
 9.05 Intr + 146125 146154   30  0  0   34  116    49 0.564   0.63
 9.06 Intr + 147944 148042   99  1  0   36   76    80 0.726   1.91
 9.07 Intr + 152606 152677   72  1  0   39   47   146 0.646   5.20
 9.08 Intr + 171956 172097  142  1  1    9   63   208 0.749  10.33
 9.09 Term + 179585 179769  185  0  2   81   49   137 0.987   6.81
 9.10 PlyA + 179780 179785    6                               1.05

10.02 PlyA - 181858 181853    6                               1.05
10.01 Term - 196744 196588  157  0  1   75   43   115 0.642   3.11

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term -  86577  86509   69  0  0   69   42    59 0.805  -2.66


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815575r:52847950_53048588|GENSCAN_predicted_peptide_1|110_aa
MAQELRDTCTSFSSRFDQVEERVMVIEDQINEMKQEEKFREKRVKRNKQSLQEIWDYVKR
PNLRLIGVPESDGENGTKLENTLQDIFQENFPNLARQASIQIQEIQRTPQ

>gi568815575r:52847950_53048588|GENSCAN_predicted_CDS_1|333_bp
atggcacaagaactacgtgacacatgcacaagcttcagtagccgattcgatcaagtggaa
gaaagggtaatggtgattgaagatcaaattaatgaaatgaagcaagaagagaagtttaga
gaaaaaagagtaaaaagaaacaaacaaagcctccaagaaatatgggactatgtgaaaaga
ccaaatctacgtctgattggtgtacctgaaagtgacggggagaatggaaccaagctggaa
aacactcttcaggatattttccaggaaaacttccccaacctagcaaggcaggccagcatt
caaattcaggaaatacagagaacaccacaatga

>gi568815575r:52847950_53048588|GENSCAN_predicted_peptide_2|298_aa
MKDLFKENYKPLLNEIKEDTNKWKNTPHSWVGTINIVKMAILPKVIYRFNAIPIKLPMTF
FTELEKTTLKFIWNQKRAHIAKSILSQKNKARDIKLPDFKLYYKDTVTKTAWYWYQNRAI
DQGNRTEPSEIMPHIYNHLIFDKPDKNKQWGKDSLFNKWCLENWLAICRKLKLEPFLPPY
TKINSSWIKDLNVRPENIKTLEENLGNTIQDIGMGKDFMSKTLKAMATKAKIDKWDLIKL
KSFCTAKETTIRVNRQPTEWEKIFAIYSSDKGLISRIYNELHQIYKKKTTPSKSGQRI

>gi568815575r:52847950_53048588|GENSCAN_predicted_CDS_2|897_bp
atgaaggacctcttcaaggagaactacaaaccactgctcaatgaaataaaagaggataca
aacaaatggaagaacactccacactcatgggtaggaacaatcaatattgtgaaaatggcc
atactgcccaaggtaatttatagattcaatgccatccccatcaagctaccaatgactttc
ttcacagaattggaaaaaactactttaaagttcatatggaaccaaaaaagagcccacatc
gccaagtcaatcctaagccaaaagaacaaagctagagacatcaagctacctgacttcaaa
ctatactacaaggatacagtaaccaaaacagcatggtactggtaccaaaacagagctata
gatcaagggaacagaacagagccctcagaaataatgccgcatatctataaccatctgatc
tttgacaaacctgacaaaaacaagcaatggggaaaggattccctatttaataaatggtgc
ttggaaaactggctagccatatgcagaaagctgaaactggaacccttccttccaccttat
acaaaaattaattcaagctggattaaagacttaaatgttagacctgaaaacataaaaact
ctggaagaaaacctaggcaataccattcaggacataggcatgggcaaggacttcatgtct
aaaacactaaaagcaatggcaacaaaagccaaaattgacaaatgggatctaattaaactc
aagagcttctgcacagcaaaagaaactaccatcagagtgaacaggcagcctacagaatgg
gagaaaatttttgcaatctactcatctgacaaagggctaatatccagaatctacaatgaa
ctccatcaaatttacaagaaaaaaacaaccccatcaaaaagtgggcaaaggatatga

>gi568815575r:52847950_53048588|GENSCAN_predicted_peptide_3|356_aa
MKAEIKMFFETNENKDTTYQNLWDTFKAVCRGKLIALNAHKRKQERSKIDTLTSQLKELE
KQEQTHSKASRRQEITKIRAELKEIETQKTLQKINESRSWFFEKINKIDRPLARIIKKKR
EKNQIDAIKNDKGDITIDPTEIQTTIREYYKHLYANKLENLEEMDKFLDTYTLARLNQEE
VESLNRPITGPEIEAIINSLPTKKSPGPDGFTAEFYQRHKEELLPFLLKLFQSIEKERTL
PNAFCEASIILMLIPKAWQRHNKKKENFRPISLMNIDAKVLNKILANRIQQHIQKLIHHD
QVGFIPGMQGWFNIHKSINVIQHINRTKHKNHMIISIDVEKAFDEIHQPFMLKTLN

>gi568815575r:52847950_53048588|GENSCAN_predicted_CDS_3|1071_bp
atgaaggcagaaataaagatgttctttgaaaccaacgagaacaaagacacaacataccag
aatctatgggacacattcaaagcagtgtgtagagggaaattgatagcactaaatgcccac
aagagaaagcaggaaagatctaaaattgacaccctaacatcacaattaaaagaactagag
aagcaagagcaaacacattcaaaagctagcagaaggcaagaaataactaaaatcagagca
gaactgaaggaaatagagacacaaaaaacccttcaaaaaatcaatgaatccaggagctgg
ttttttgaaaagatcaacaaaattgatagaccgctagcaagaataataaagaagaaaaga
gagaagaatcaaatagacgcaataaaaaatgataaaggggatatcaccatcgatcccaca
gaaatacaaactaccatcagagaatactataaacacctctatgcaaataaactagaaaac
ctagaagaaatggataaattcctcgacacatacaccctcgcaagactaaaccaggaagaa
gttgaatctctgaatagaccaataacaggccctgaaattgaggcaataattaatagctta
ccgaccaaaaaaagtccaggaccagatggattcacagctgaattctaccagaggcataag
gaggagctgctaccattccttctgaaactattccaatcaatagaaaaagagagaaccctc
cctaacgcattttgtgaggccagcatcatcctgatgctgataccaaaagcctggcagaga
cacaacaaaaaaaaagagaattttagaccaatatccctgatgaacatcgatgcaaaagtc
ctcaataaaatactggcaaaccgaatccagcagcacatccaaaagcttatccaccatgat
caagtgggcttcatccctgggatgcaaggctggttcaacatacacaaatcaataaacgta
atccagcatataaacagaaccaaacacaaaaaccatatgattatctcgatagatgtagaa
aaggcctttgacgaaattcaccagcccttcatgctaaaaactctcaattaa

>gi568815575r:52847950_53048588|GENSCAN_predicted_peptide_4|345_aa
MTRLAVKKGAPLTGTENAWEGVKTGSKMSYELLVVIEEGDEGDWTRELPVVMERIHPSGV
GREKPPNRSVFRLRRSAAANQRFSFSAASHPCDSGFCPHTFLATFLVSENLQLHLLFWTR
GPGGASSWDQTSMDPLQKRNPASPSKSSPMTAAETSQEGPAPSQPSYSEQPMMGLSNLSP
GPGPSQAVPLPEGLLRQRYREEKTLEERRWERLEFLQRKKAFLRHVRRRHRDHMAPYAVG
REARISPLGDRSQNRFRCECRYCQSHRPNLSGIPGESNRAPHPSSWETLVQGLSGLTLSL
GTNQPGPLPEAALQPQETEEKRQRERQQESKIMFQRLLKQWLEEN

>gi568815575r:52847950_53048588|GENSCAN_predicted_CDS_4|1038_bp
atgaccagattagcagtcaagaaaggtgccccactcactgggacagagaatgcgtgggaa
ggggtcaagactggcagcaagatgagctatgaattgttggtggtcatcgaggagggagat
gagggtgactggactagggaacttcctgtggtgatggagaggatccacccgagcggcgtg
ggtcgcgagaagccacccaaccgctccgtcttccggctccggcggtccgcggcagccaat
caaaggttcagtttctcagcggcgtcgcatccctgtgactctgggttctgcccgcacaca
ttcctcgccaccttcttggtgtctgagaacctccagcttcacctccttttctggacccga
gggcctggcggagcttccagctgggaccagacctccatggatccactccagaaacggaat
ccagcatcgccttccaaatcttccccgatgacagctgcagagacttcccaggaaggtcca
gcgccctctcagccttcgtactcagaacagccgatgatgggcctcagtaacctgagcccc
ggtcctggccccagccaggccgtgcctctcccagaggggctgctccgccagcggtacaga
gaggagaagaccctggaagagcggcggtgggagaggctggagttccttcagaggaagaaa
gcattcctgcggcatgtgaggaggagacaccgcgatcacatggccccctatgctgttggg
agggaagccagaatctccccattaggtgacagaagtcagaatcgattccgatgtgaatgt
cgatactgccagagccacaggccgaatctttctgggatccctggggagagtaacagggcc
ccacatccctcctcctgggagacgctggtgcagggcctcagtggcttgactctcagccta
ggcaccaaccagcccgggcctctgcctgaagcggcactccagccacaggagacagaggag
aagcgccagcgagagaggcagcaggagagcaaaataatgtttcagaggctgctcaagcag
tggttagaggaaaactga

>gi568815575r:52847950_53048588|GENSCAN_predicted_peptide_5|279_aa
MALGLAQVSNAGRLGSRVPQPSAPNRREGSLRRTPMRRADLPGLRRAGPELVNPRPAPPS
GLRISGGAGTFCPDAMVPRAELVGVSGAAGTYCAVAVVARAGLGEAFVQGGSLRAWCRKV
VEKMEFPLWLVAFGLFRRQVAVLHCGVALLAFRPSLRERKNAAHRFPMEEPFSPGKQQEL
SEEAKRLGMVLDVFAPNRDRGYHPGRHPETAPPPPPKESLRSFAMTSFLDKDLQFPTAPG
LWPVDVAQKGDRQGEKMETLMIAEMMTVTGSMDLVCLLR

>gi568815575r:52847950_53048588|GENSCAN_predicted_CDS_5|840_bp
atggctctgggactggcacaggtctcgaacgcggggcggctgggcagtcgtgtccctcag
ccgtcagctcctaaccgcagggaaggaagcctgcggcgaaccccgatgagacgagccgac
ctccccgggctccgacgcgcaggcccagagctcgtcaatcctaggccagccccgccctcc
ggactgcgtatttccggcggcgcaggaactttctgtccggatgctatggttccgagggcg
gaactagtgggggtgtctggcgccgcaggaacttattgcgcagttgctgtggttgcgagg
gcgggactaggggaggcttttgtgcagggtggatctctcagggcttggtgccgaaaagta
gtggagaagatggaatttcctctgtggttggtggctttcggtttatttcgccggcaggtg
gcagtgttgcactgtggagtggccctgctcgccttccgcccctcccttcgcgagcgaaaa
aacgctgcccatcgttttccgatggaagagccattctctccaggaaaacaacaggaactg
tctgaagaagctaaaagacttggaatggttttagatgtgttcgcccccaacagggacagg
gggtaccacccaggtagacacccggagactgccccccccccaccgcccaaagagagttta
aggagctttgcaatgacgagtttccttgacaaagaccttcagttcccgacggcacctggg
ctgtggccagtcgacgtagcccagaagggagacaggcaaggtgagaaaatggaaaccctg
atgattgctgaaatgatgactgtcactggcagcatggacctggtgtgcttgctgcgctga

>gi568815575r:52847950_53048588|GENSCAN_predicted_peptide_6|85_aa
MSVSPRGYHPGRHPETAPPPPPKESLRSFAMTSFLDKDLQFPTAPGLWPVDVAQKGDRQG
EKMETLMIAEMMTVTGSMDLVCLLR

>gi568815575r:52847950_53048588|GENSCAN_predicted_CDS_6|258_bp
atgagcgtgtcaccgagggggtaccacccaggtagacacccggagactgcccccccccca
ccgcccaaagagagtttaaggagctttgcaatgacgagtttccttgacaaagaccttcag
ttcccgacggcacctgggctgtggccagtcgacgtagcccagaagggagacaggcaaggt
gagaaaatggaaaccctgatgattgctgaaatgatgactgtcactggcagcatggacctg
gtgtgcttgctgcgctga

>gi568815575r:52847950_53048588|GENSCAN_predicted_peptide_7|345_aa
MTRLAVKKGAPLTGTENAWEGVKTGSKMSYELLVVIEEGDEGDWTRELPVVMERIHPSGV
GREKPPNRSVFRLRRSAAANQRFSFSAASHPCDSGFCPHTFLATFLVSENLQLHLLFWTR
GPGGASSWDQTSMDPLQKRNPASPSKSSPMTAAETSQEGPAPSQPSYSEQPMMGLSNLSP
GPGPSQAVPLPEGLLRQRYREEKTLEERRWERLEFLQRKKAFLRHVRRRHRDHMAPYAVG
REARISPLGDRSQNRFRCECRYCQSHRPNLSGIPGESNRAPHPSSWETLVQGLSGLTLSL
GTNQPGPLPEAALQPQETEEKRQRERQQESKIMFQRLLKQWLEEN

>gi568815575r:52847950_53048588|GENSCAN_predicted_CDS_7|1038_bp
atgaccagattagcagtcaagaaaggtgccccactcactgggacagagaatgcgtgggaa
ggggtcaagactggcagcaagatgagctatgaattgttggtggtcatcgaggagggagat
gagggtgactggactagggaacttcctgtggtgatggagaggatccacccgagcggcgtg
ggtcgcgagaagccacccaaccgctccgtcttccggctccggcggtccgcggcagccaat
caaaggttcagtttctcagcggcgtcgcatccctgtgactctgggttctgcccgcacaca
ttcctcgccaccttcttggtgtctgagaacctccagcttcacctccttttctggacccga
gggcctggcggagcttccagctgggaccagacctccatggatccactccagaaacggaat
ccagcatcgccttccaaatcttccccgatgacagctgcagagacttcccaggaaggtcca
gcgccctctcagccttcgtactcagaacagccgatgatgggcctcagtaacctgagcccc
ggtcctggccccagccaggccgtgcctctcccagaggggctgctccgccagcggtacaga
gaggagaagaccctggaagagcggcggtgggagaggctggagttccttcagaggaagaaa
gcattcctgcggcatgtgaggaggagacaccgcgatcacatggccccctatgctgttggg
agggaagccagaatctccccattaggtgacagaagtcagaatcgattccgatgtgaatgt
cgatactgccagagccacaggccgaatctttctgggatccctggggagagtaacagggcc
ccacatccctcctcctgggagacgctggtgcagggcctcagtggcttgactctcagccta
ggcaccaaccagcccgggcctctgcctgaagcggcactccagccacaggagacagaggag
aagcgccagcgagagaggcagcaggagagcaaaataatgtttcagaggctgctcaagcag
tggttagaggaaaactga

>gi568815575r:52847950_53048588|GENSCAN_predicted_peptide_8|165_aa
MSELPSTIASKRIKYLGIQLTRDVKDLFKENYKPLLNEIKEDTNKWKNIPCSWIGRVNIV
KMAILPKVIYRINAIPIKLPMTFFTELEKTTLKFIWNQKRACIAKTTLSQKNKSGGITLP
DFKLYILQGYSNQNSMVLVPKQRYRPMEQNRALRNNTTHLQPSDL

>gi568815575r:52847950_53048588|GENSCAN_predicted_CDS_8|498_bp
atgagtgaactcccatccacaattgcttcaaagagaataaaatatctaggaatccaactt
acaagggatgtgaaggacctcttcaaggagaactacaaaccactgctcaacgaaataaaa
gaggacacaaacaaatggaagaacattccatgctcatggataggaagagtcaatatcgtg
aaaatggccatactgcccaaggtaatttatagaatcaatgccatccccatcaagctacca
atgactttcttcacagaattggaaaaaactactttaaagttcatatggaaccaaaaaagg
gcctgcattgccaagacaaccctaagccaaaagaacaaatctggaggcatcacgctacct
gacttcaaactatatatactacaaggctatagtaaccaaaacagcatggtactggtacca
aaacagagatatagaccaatggaacagaacagagccctcagaaataataccacacatcta
caaccatctgatctttga

>gi568815575r:52847950_53048588|GENSCAN_predicted_peptide_9|374_aa
MEYYAAIKKDEFMSFVGTWMKLETIILRKLSQGQKTKHRMFSLIGEETECRRGQQLGLQL
HSRVGDRVRLSRKEKKRKKRKEKKRKEKKRKEKKRKDAGPGQKEEEEEEDQEGLGKGLCS
ELGLMRIQKALTCEWVIEVELTVTELGEKSMIHVRWSASVWYRITGGHSLSWRLRSICLP
LWPQYGDNDSYHQGLPRKRFLDRDLTAKKDRTVPSRAPLGGANKEQLVDADTHGPFRAGP
QRPLCLTVREREDPGTRLYECIPLYSSKTLSPKKIEEEEEEEEEEEEEEKEEEEEEEKES
AELDLDAGIRLDFRPTLEPSEELLEPIALWAVPDEQLSIDQQGAAWFTDGSSQGNGNCLV
WKAAALKPGHGKMD

>gi568815575r:52847950_53048588|GENSCAN_predicted_CDS_9|1125_bp
atggaatactatgcagccataaaaaaggatgagttcatgtcctttgtagggacatggatg
aagctggaaaccatcattctccgcaaactatcacaaggacaaaaaaccaaacaccgcatg
ttctcactcataggtgaggagactgagtgtcgtagagggcagcagctgggcctgcagctg
cacagcagagtgggcgatagagtgagactgtcaagaaaagaaaagaaaagaaagaaaaga
aaagaaaagaaaagaaaagaaaagaaaagaaaagaaaagaaaagaaaagatgctggccct
ggtcagaaggaggaggaggaagaggaggaccaggaaggcctcggcaaaggactgtgctcg
gagctggggctgatgagaatacagaaggccctcacctgtgaatgggtgatagaagtagag
ttgacagtcacggagttgggtgagaaaagcatgattcatgttaggtggtcagccagtgtc
tggtacagaatcacgggtgggcactcactctcttggaggctaaggtccatctgtctacct
ctgtggccccagtatggggacaatgacagttaccatcaaggcttgccaaggaagaggttc
ctggaccgagacctcacagccaaaaaggatagaactgttccatcccgcgcgccccttggt
ggtgcaaacaaggaacagctagtggatgcagatacccatggaccattccgggctggtccc
cagaggccactgtgcctgaccgtgcgcgagcgcgaagacccagggacccggctctacgag
tgcatcccgctgtactctagcaaaaccctgtctccaaaaaaaatagaagaagaagaagaa
gaagaggaagaggaagaggaagaagaaaaggaggaggaagaggaggaggaaaaagagagt
gctgagttggaccttgatgctggaataagactagatttcagaccgactttagaaccatct
gaggagctactggaaccaattgccctatgggcagtgcccgatgaacagctctcaattgac
caacaaggagctgcttggtttacagatggcagttcccaggggaatggaaactgccttgtt
tggaaagctgctgcattaaaaccaggacacggaaagatggattga

>gi568815575r:52847950_53048588|GENSCAN_predicted_peptide_10|52_aa
XDWKSLDAWSKGPQGASAGESDSETRIGWNPCMIIIFTWNCCNLEDINFAQA

>gi568815575r:52847950_53048588|GENSCAN_predicted_CDS_10|159_bp
nnggattggaaatctctggatgcctggtctaagggtccccagggtgcatcagcaggtgag
tccgattccgagacaagaattggctggaatccttgcatgatcatcatctttacatggaac
tgctgtaacctggaagatataaactttgcccaggcctaa