GENSCAN 1.0	Date run:  4-Nov-116	Time: 11:51:59

Sequence gi568815575r:52597991_52805749 : 207759 bp : 44.01% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Intr +    504    618  115  2  1   92   55   131 0.963  10.22
 1.02 Term +   1176   1279  104  1  2   73   37   114 0.916   3.24
 1.03 PlyA +   1514   1519    6                               1.05

 2.03 PlyA -   1799   1794    6                              -0.45
 2.02 Term -   3089   2560  530  0  2   52   33   174 0.393   2.72
 2.01 Init -   5757   5667   91  0  1   99  106    57 0.821   9.28
 2.00 Prom -   8373   8334   40                              -4.76

 3.00 Prom +   9027   9066   40                              -3.16
 3.01 Init +  12885  12949   65  2  2   79   80    30 0.086   1.92
 3.02 Intr +  13639  13926  288  1  0  118   52    89 0.025   4.66
 3.03 Intr +  26941  27076  136  1  1  109  100   115 0.385  15.37
 3.04 Intr +  27512  27626  115  1  1   97   60   110 0.999   9.12
 3.05 Intr +  28302  28397   96  1  0   98   96    75 0.970   9.28
 3.06 Intr +  30177  30307  131  1  2   55  113    17 0.617   1.31
 3.07 Term +  32281  32397  117  0  0   32   54   132 0.941   2.74
 3.08 PlyA +  32672  32677    6                               1.05

 4.03 PlyA -  32983  32978    6                              -1.75
 4.02 Term -  33135  33029  107  1  2   71   49   125 0.810   5.47
 4.01 Init -  35434  35344   91  1  1  103  106    31 0.716   6.21
 4.00 Prom -  42223  42184   40                              -4.96

 5.11 PlyA -  42631  42626    6                               1.05
 5.10 Term -  43095  43065   31  2  1   93   47    32 0.161  -3.07
 5.09 Intr -  46680  46591   90  2  0   95   57   118 0.347   8.51
 5.08 Intr -  47553  47457   97  1  1   92   -1   130 0.555   3.57
 5.07 Intr -  50406  50271  136  0  1   32  111   120 0.357   8.84
 5.06 Intr -  52398  52301   98  1  2   34   99    33 0.397  -1.27
 5.05 Intr -  54357  54262   96  1  0   87   96    41 0.496   4.78
 5.04 Intr -  54994  54880  115  1  1   97   60   133 0.917  11.42
 5.03 Intr -  55502  55414   89  0  2   79  100   107 0.916  10.69
 5.02 Intr -  58541  58373  169  2  1   90  110    93 0.330  11.22
 5.01 Init -  68622  68575   48  0  0   82   60    36 0.291   1.15
 5.00 Prom -  74202  74163   40                              -3.46

 6.03 PlyA -  74403  74398    6                               1.05
 6.02 Term -  77295  77189  107  1  2   58   49   104 0.776   2.07
 6.01 Init -  79916  79826   91  2  1   92  106    70 0.852   9.94
 6.00 Prom -  86979  86940   40                              -7.36

 7.11 PlyA -  88424  88419    6                               1.05
 7.10 Term -  89548  89368  181  0  1  -36   55   200 0.011   1.38
 7.09 Intr -  99528  99439   90  2  0   95   57    82 0.123   4.91
 7.08 Intr - 100098 100002   97  1  1   92   -1   105 0.210   1.07
 7.07 Intr - 102588 102453  136  0  1   29   99   157 0.597  11.04
 7.06 Intr - 104626 104529   98  2  2   37   99   104 0.941   6.13
 7.05 Intr - 106602 106507   96  1  0   94   96    71 0.993   8.48
 7.04 Intr - 107252 107138  115  2  1  133   60   145 0.999  16.22
 7.03 Intr - 107826 107691  136  2  1  123  100   139 0.953  19.17
 7.02 Intr - 111224 111052  173  2  2   77   37    84 0.721   0.94
 7.01 Init - 114153 114040  114  0  0   91   93    78 0.955   8.81
 7.00 Prom - 130809 130770   40                              -2.26

 8.00 Prom + 131637 131676   40                              -2.26
 8.01 Init + 148293 148406  114  2  0   91   93    78 0.955   8.81
 8.02 Intr + 151226 151398  173  1  2   77   37    84 0.721   0.94
 8.03 Intr + 154624 154759  136  1  1  123  100   139 0.953  19.17
 8.04 Intr + 155198 155312  115  1  1  133   60   145 0.999  16.22
 8.05 Intr + 155848 155943   96  2  0   94   96    71 0.993   8.48
 8.06 Intr + 157824 157921   98  1  2   37   99   104 0.940   6.13
 8.07 Intr + 159864 159999  136  2  1   29   99   157 0.597  11.04
 8.08 Term + 162354 162454  101  1  2  100   35   125 0.775   6.69
 8.09 PlyA + 163526 163531    6                               1.05

 9.08 PlyA - 163659 163654    6                               1.05
 9.07 Term - 168453 168357   97  2  1   96   43    95 0.094   3.24
 9.06 Intr - 182614 182525   90  0  0   95   57   109 0.069   7.61
 9.05 Intr - 191028 190913  116  0  2   67   75    20 0.261  -2.15
 9.04 Intr - 193065 192852  214  2  1   97   53   140 0.881  10.12
 9.03 Intr - 197951 197879   73  0  1   87   61     6 0.291  -3.74
 9.02 Intr - 198478 198248  231  2  0   19   72   316 0.538  20.84
 9.01 Init - 207361 207349   13  1  1   80   96     4 0.313   0.75

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init + 182548 182638   91  0  1   92  106    70 0.822   9.94


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815575r:52597991_52805749|GENSCAN_predicted_peptide_1|72_aa
AFNDTAKYFSEKEWEKMKASEKIIHVYMKRKYEAMTKQGFTATIPTFMDDKGAADCQGND
FDNDHNCGNQGE

>gi568815575r:52597991_52805749|GENSCAN_predicted_CDS_1|219_bp
gccttcaatgatactgccaaatacttctctgagaaagaatgggaaaagatgaaagcctca
gagaaaatcatccatgtgtatatgaagagaaagtatgaggccatgactaaacagggtttc
acggctaccatcccaactttcatggatgacaaaggggccgcagactgccaggggaatgat
tttgataatgaccataactgcgggaatcagggtgagtag

>gi568815575r:52597991_52805749|GENSCAN_predicted_peptide_2|206_aa
MPTFVNGDHVLFLIMGMCHIPEAEARGDKETQNLLKLISNFSKVSGYKINVQKSQAFLYT
NNRQTESQIMSELPFTIASNGIKYLGIQLTRDVKDLFKENYKPLLSEIKEDTNKWKNIPC
SWVGRINIMKMAILPKVIYRFNAIPIKLPMTFFTELEKTTLKFIWNQKRARIAKSILSQK
NKAGGITLPDFRSLIVIVGVERIWPV

>gi568815575r:52597991_52805749|GENSCAN_predicted_CDS_2|621_bp
atgcccacgttcgtgaatggtgaccatgttctgtttctcatcatgggcatgtgtcatatc
cccgaggctgaggcaagaggagataaggaaacccaaaatctccttaagctgataagcaac
ttcagcaaagtctcaggatacaaaatcaatgtgcaaaaatcacaagcattcttatacacc
aataacagacaaacagagagccaaatcatgagtgaactcccattcacaatagcttcaaac
ggaataaaatacctaggaatccaacttacaagggacgtgaaggacctcttcaaggagaac
tacaaaccactgctcagtgaaataaaagaggatacaaacaaatggaagaacattccatgc
tcatgggtaggaagaatcaatatcatgaaaatggccatactgcccaaggtaatttataga
ttcaatgccatccccatcaagctaccaatgactttcttcacagaattggaaaaaactact
ttaaagttcatatggaaccaaaaaagagcccgtatcgccaagtcaatcctaagccaaaag
aacaaagctggaggcatcacgctacctgatttcagatctcttatagtgattgtgggagtt
gaaagaatctggcctgtttag

>gi568815575r:52597991_52805749|GENSCAN_predicted_peptide_3|315_aa
MPQRQLDSSEQRPNGEKRAGSRNQVTPHCPLGHYYAPSRSPQLLYLLWYLSIIPSSLCTV
VVSVHGTGTSLTCKRNRMRLSSHRTFGLVEGEISEGRPHSVTWNQVLHFSIRGLSVPETK
GPVARKSQAVSLAGESAPGAMNGDDAFAKRPRDDDKASEKRSKAFNDIATYFSKKEWEKM
KYSEKISYVYMKRNYEAMTKLGFNVTLPPFMCNKQATDFQGNYFDNDRNRRIQECPHATE
VSLEFGNLYQQRKILMYSLPVERPQMTFGRLQRIIPKIMPKKPAEEGNDSKGVSEASGPQ
NDGKQLRRPGKSKYF

>gi568815575r:52597991_52805749|GENSCAN_predicted_CDS_3|948_bp
atgccacagagacagttggactcatcagaacagaggcctaatggagagaaacgtgcagga
tccagaaaccaggtcaccccacactgtcccctgggccactactatgccccctccaggtca
cctcagcttttgtatcttctctggtatttgagcatcatccctagctctctttgcacagtc
gttgtctccgttcatggcaccgggactagtctgacctgcaagagaaacagaatgagactt
tccagccacaggacctttggtcttgtggagggagaaatcagtgaaggccggccacactca
gtcacctggaatcaggtgctgcatttctccatccggggcttatctgttcctgagaccaag
ggtcctgtagctagaaagtctcaggctgtttctctcgcaggtgagagtgctcctggtgcc
atgaacggagacgacgcctttgcaaagagacccagggatgatgataaagcatcagagaag
agaagcaaggccttcaatgatattgccacatacttctctaagaaagagtgggaaaagatg
aaatactcggagaaaatcagctatgtgtatatgaagagaaactatgaggccatgactaaa
ctaggtttcaatgtcaccctcccacctttcatgtgtaataaacaggccacagacttccag
gggaattattttgataatgaccgtaaccgcaggattcaggaatgccctcatgcgacagaa
gtctctctagagtttggaaatctttaccaacaaagaaaaattctgatgtattctcttcca
gttgaacgtcctcagatgacttttggcaggctccagagaatcatcccgaagatcatgccc
aagaagccagcagaggaaggaaatgattcgaagggagtgtcagaagcatctggcccacag
aacgatgggaaacagctgcgccgccccgggaaaagcaaatacttctga

>gi568815575r:52597991_52805749|GENSCAN_predicted_peptide_4|65_aa
MPMFVKGHHVLLLIMGMCHIPQAEARREKERTATATSPFSNHHLDQPAAINTEARPHTNK
KSVTH

>gi568815575r:52597991_52805749|GENSCAN_predicted_CDS_4|198_bp
atgcccatgttcgtgaaaggtcaccatgttctgcttctcatcatgggcatgtgtcatatc
ccccaggctgaggcgagaagagagaaggaaagaactgccacagccacttcacccttcagc
aaccaccaccttgatcagccagcagccatcaacactgaggcaagaccccacaccaacaag
aagagtgtgactcactga

>gi568815575r:52597991_52805749|GENSCAN_predicted_peptide_5|322_aa
MFLITLQVCVDVDAREHCRHRVSAPRKGLSEEDYIRSDIFMINSQPSTSSGQSYLYFSSN
EQNQAGSTRWDEGQTAPGAMNGDDAFARRPRAGAQIPEKIQKSFDDIAKYFSKKEWEKMK
SLEKISYVYMKRKYEAMTKLGFKATLPPFMHNTGATDLQGNDFDNDRNQGNQDDFLQAPE
NLPEGECLSDLKDQRTFVPPWMQTLIMPKKPAEEGNDSKGVPEASGSQNDGKHLCPPGKP
STSEKINKTSGPKRGKHAWTHRLRERKQLVIYEEISDPEEDDDLGDTTYAHDEKQNVVTF
HEHGHGCGPLVIRNALIFLVDH

>gi568815575r:52597991_52805749|GENSCAN_predicted_CDS_5|969_bp
atgtttcttatcacacttcaagtctgtgttgatgttgatgccagagagcactgcagacat
agagtatcagcccccagaaaaggcctttccgaggaggactatatcaggtctgacattttc
atgatcaacagccagccatctaccagttctggccaatcctatctgtatttcagcagcaat
gaacagaaccaagctgggagcacgagatgggatgagggtcagactgctcctggtgccatg
aacggagacgacgcctttgcaaggagacctagggctggtgctcaaataccagagaagatc
caaaagtccttcgatgatattgccaaatacttctctaagaaagagtgggaaaagatgaaa
tccttggagaaaatcagctatgtgtatatgaagagaaagtatgaggccatgactaaacta
ggcttcaaggccaccctcccacctttcatgcataatacaggggccacagacctccagggg
aatgattttgataatgaccgtaaccaagggaatcaggatgactttttgcaggctccagag
aatcttcccgaaggtgagtgtctctcagatctaaaggaccagagaacctttgtccctcca
tggatgcaaacactgatcatgcccaagaagccagcagaggaaggaaatgattcgaaggga
gtgccagaagcatctggctcacagaacgatgggaaacacctgtgccctccaggaaaacca
agtacctctgagaagattaacaagacatccggacccaaaagggggaaacatgcctggacc
cacagactgcgtgagagaaagcagctggtgatttatgaagagatcagcgaccctgaagaa
gacgacgacctcggggatacgacatatgcccatgatgagaagcagaacgtggtgaccttt
cacgaacatgggcatggctgcggacccctcgtcatcaggaatgccttaatatttctggtg
gaccactga

>gi568815575r:52597991_52805749|GENSCAN_predicted_peptide_6|65_aa
MPVFMKGHHVLLLIMGMCRIPEAEARREKEKTATATPIFSNHHLDQPAAINTKARPSTSK
KSVTH

>gi568815575r:52597991_52805749|GENSCAN_predicted_CDS_6|198_bp
atgcccgtgttcatgaaaggtcaccacgttctgcttctcatcatgggcatgtgtcgtatc
cccgaggctgaggcaagaagagagaaggaaaaaactgccacagccactccaatcttcagc
aaccaccaccttgatcagccagcagccattaacaccaaggcaagaccctccaccagcaaa
aagagtgtgactcactga

>gi568815575r:52597991_52805749|GENSCAN_predicted_peptide_7|411_aa
MRYHYTLITIAKIKDIVTTPNGDKDAEKLDTSLSAAGKHCRHRVSTSRKGLSKEDYIRTD
IFMINSQPSTSSGQSYLYFINNEQNQAGSMRWDEGKIKAAVAGKTQAISLAGQTAPGAMN
GDDAFARRPTVGAQIPEKIQKAFDDIAKYFSKEEWEKMKASEKIFYVYMKRKYEAMTKLG
FKATLPPFMCNKRAEDFQGNDLDNDPNRGNQDDFRQAPGNLPEGECLSDLKDQRTFVPPR
MRTLIMPKKPAEEGNDSEEVPEASGPQNDGKELCPPGKPTTSEKIHERSGPKRGEHAWTH
RLRERKQLVIYEEISDPEEDDDLRDTTHAHDEKQNVVTFHEHGHGCGPLVIRTGCLHEEP
EAPSVFDHMMKKLDLTSDGQLDFQECLHLMDGMTVAYHDSFLKAAHSKKRI

>gi568815575r:52597991_52805749|GENSCAN_predicted_CDS_7|1236_bp
atgaggtatcactacacacttattacaatagctaaaataaaagacatagtgacaacacca
aatggtgacaaggatgcagagaaactggacacctcattaagtgctgctgggaagcactgc
agacacagagtatcaacctccagaaagggcctttccaaggaggactatatcaggactgac
attttcatgatcaacagccagccatctaccagttctggccaatcctatctgtatttcatc
aacaatgaacagaaccaagctgggagcatgagatgggacgagggcaagatcaaagctgct
gtggctggaaagactcaggctatttctcttgcaggtcagactgctcccggtgccatgaac
ggagacgacgcctttgcaaggagacccacggttggtgctcaaataccagagaagatccaa
aaggccttcgatgatattgccaaatacttctctaaggaagagtgggaaaagatgaaagcc
tcggagaaaatcttctatgtgtatatgaagagaaagtatgaggctatgactaaactaggt
ttcaaggccaccctcccacctttcatgtgtaataaacgggccgaagacttccaggggaat
gatttggataatgaccctaaccgtgggaatcaggatgactttcggcaggctccagggaat
ctccccgaaggtgagtgtctctcagatctaaaggaccagagaacctttgtccctccacgg
atgcgaacactgatcatgcccaagaagccagcagaggaaggaaatgattcggaggaagtg
ccagaagcatctggcccacaaaatgatgggaaagagctgtgccccccgggaaaaccaact
acctctgagaagattcacgagagatctggacccaaaaggggggaacatgcctggacccac
agactgcgtgagagaaaacagctggtgatttatgaagagatcagcgaccctgaggaagat
gacgacctcagggatacgacacatgcccatgatgagaagcagaacgtggtgacctttcac
gaacatgggcatggctgcggacccctcgtcatcagaactggatgccttcatgaagaacca
gaggcccccagtgtctttgaccacatgatgaagaaactggacctcactagtgatgggcag
ctggatttccaagaatgtctgcatctgatggatggcatgactgtggcttaccatgactct
tttctcaaggctgcccattccaagaagcggatctga

>gi568815575r:52597991_52805749|GENSCAN_predicted_peptide_8|322_aa
MRYHYTLITIAKIKDIVTTPNGDKDAEKLDTSLSAAGKHCRHRVSTSRKGLSKEDYIRTD
IFMINSQPSTSSGQSYLYFINNEQNQAGSMRWDEGKIKAAVAGKTQAISLAGQTAPGAMN
GDDAFARRPTVGAQIPEKIQKAFDDIAKYFSKEEWEKMKASEKIFYVYMKRKYEAMTKLG
FKATLPPFMCNKRAEDFQGNDLDNDPNRGNQDDFRQAPGNLPEGECLSDLKDQRTFVPPR
MRTLIMPKKPAEEGNDSEEVPEASGPQNDGKELCPPGKPTTSEKIHERSGPKRGEHAWTH
RLRERKQLVIYEEISDPEEDDE

>gi568815575r:52597991_52805749|GENSCAN_predicted_CDS_8|969_bp
atgaggtatcactacacacttattacaatagctaaaataaaagacatagtgacaacacca
aatggtgacaaggatgcagagaaactggacacctcattaagtgctgctgggaagcactgc
agacacagagtatcaacctccagaaagggcctttccaaggaggactatatcaggactgac
attttcatgatcaacagccagccatctaccagttctggccaatcctatctgtatttcatc
aacaatgaacagaaccaagctgggagcatgagatgggacgagggcaagatcaaagctgct
gtggctggaaagactcaggctatttctcttgcaggtcagactgctcccggtgccatgaac
ggagacgacgcctttgcaaggagacccacggttggtgctcaaataccagagaagatccaa
aaggccttcgatgatattgccaaatacttctctaaggaagagtgggaaaagatgaaagcc
tcggagaaaatcttctatgtgtatatgaagagaaagtatgaggctatgactaaactaggt
ttcaaggccaccctcccacctttcatgtgtaataaacgggccgaagacttccaggggaat
gatttggataatgaccctaaccgtgggaatcaggatgactttcggcaggctccagggaat
ctccccgaaggtgagtgtctctcagatctaaaggaccagagaacctttgtccctccacgg
atgcgaacactgatcatgcccaagaagccagcagaggaaggaaatgattcggaggaagtg
ccagaagcatctggcccacaaaatgatgggaaagagctgtgccccccgggaaaaccaact
acctctgagaagattcacgagagatctggacccaaaaggggggaacatgcctggacccac
agactgcgtgagagaaaacagctggtgatttatgaagagatcagcgaccctgaggaagat
gacgagtaa

>gi568815575r:52597991_52805749|GENSCAN_predicted_peptide_9|277_aa
MGEEVQEEEDEGSSQEDEDLDSSAESSKQDEDLQLPEGSSQEDEDLGLSEGSSQEDEDLD
SSEGSLMEEEDPDSSEGSSEEGSGDVYMFMQLYPAAHSSAECTYQRVYIARICLILPRSP
DDDFICVSSHIHPNGPSQTLKPKIIQRAKAKMPNHLLQNPAPGLKCIVCIKIKTGGQSLA
YEPLETLTGFLPYSVEGVYRWMILVVIAQLRGQRESLGDTTHAHDEKQNVVTFHEHGHGC
GPLVIRALEPSLRNVNTEEDDVLVSLSPGEFSLDALL

>gi568815575r:52597991_52805749|GENSCAN_predicted_CDS_9|834_bp
atgggggaagaggtccaagaggaggaggacgaaggatcctcacaggaggacgaagaccta
gactcatctgcagaatcttcaaagcaggatgaagacctacaattacctgaaggatcttca
caggaggatgaagacctagggttatctgaaggatcttcacaagaggatgaagacctagac
tcatctgaaggatctttgatggaggaagaagacccagactcatctgaaggatcgtcagag
gagggaagtggagatgtgtatatgttcatgcaactgtacccggcagcacatagttctgct
gaatgtacatatcaaagggtctacattgcacgcatctgccttattcttccacgttcccca
gatgacgatttcatctgtgtctcctcccacatccacccaaatggaccgtcccagaccttg
aaaccgaaaatcattcagagagcaaaggccaagatgcccaaccacctgctacagaatcct
gctccaggactgaagtgtatagtctgtatcaaaataaaaactggaggacagtccctagcc
tatgagcccctggagacccttacaggatttctgccttacagtgtggagggagtctacagg
tggatgatattggttgtaatcgcccagctcagagggcagagggagagcctcggggatacg
acacatgcccatgatgagaagcagaacgtggtgacctttcatgaacacgggcatggctgt
ggacccctcgtcatcagggccttggagccatctcttcgaaatgtgaacactgaggaagat
gatgtccttgtctccctgtcaccaggggagtttagcctagatgccttgctctaa