GENSCAN 1.0	Date run:  4-Nov-116	Time: 06:53:20

Sequence gi568815575r:48196823_48404847 : 208025 bp : 43.95% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.02 Intr -   2023   1855  169  1  1   84  110    87 0.872  10.02
 1.01 Init -   3388   3275  114  1  0   91   93    67 0.923   7.71
 1.00 Prom -  15531  15492   40                              -1.86

 2.06 PlyA -  16252  16247    6                               1.05
 2.05 Term -  18830  18552  279  2  0  -12   48   248 0.144   6.25
 2.04 Intr -  20071  20003   69  1  0   94   69    42 0.164   2.28
 2.03 Intr -  20257  20163   95  2  2   63   84    40 0.197   0.78
 2.02 Intr -  20524  20396  129  2  0  109   70     1 0.098   1.07
 2.01 Init -  20674  20575  100  1  1  103   73    49 0.206   5.63
 2.00 Prom -  35987  35948   40                              -2.46

 3.05 PlyA -  36755  36750    6                               1.05
 3.04 Term -  41093  40989  105  2  0   68   41    92 0.777   0.91
 3.03 Intr -  46853  46765   89  0  2   92  100    93 0.911  10.59
 3.02 Intr -  48319  48029  291  2  0   90  110   148 0.526  14.31
 3.01 Init -  50395  50248  148  1  1   90   -4    98 0.271   1.05
 3.00 Prom -  53530  53491   40                              -4.76

 4.00 Prom +  55935  55974   40                              -4.26
 4.01 Init +  60264  60271    8  2  2   56  115     4 0.303   0.11
 4.02 Intr +  60353  60488  136  2  1  109   61   106 0.898  10.57
 4.03 Intr +  60924  61038  115  2  1   96   60   120 0.987  10.02
 4.04 Intr +  61714  61809   96  2  0   98   96    61 0.750   7.88
 4.05 Intr +  64944  64993   50  1  2   49  113    22 0.218  -0.80
 4.06 Term +  66960  67109  150  2  0   28   34   142 0.253   0.71
 4.07 PlyA +  67350  67355    6                               1.05

 5.13 PlyA -  67676  67671    6                               1.05
 5.12 Term -  67813  67707  107  2  2   57   49   145 0.606   6.07
 5.11 Intr -  69947  69819  129  0  0  100   70    23 0.509   2.37
 5.10 Intr -  71625  71533   93  1  0   52   66    77 0.010   1.84
 5.09 Intr -  79981  79886   96  2  0   94   96    23 0.411   3.68
 5.08 Intr -  80254  80140  115  1  1  103   60   153 0.690  14.02
 5.07 Intr -  80823  80688  136  2  1  117  100    55 0.845  10.17
 5.06 Intr -  99223  99134   90  0  0   95   57    81 0.001   4.81
 5.05 Intr - 100098 100002   97  1  1   92   -1   130 0.002   3.57
 5.04 Intr - 106877 106782   96  0  0   79   96    41 0.657   3.98
 5.03 Intr - 107519 107405  115  2  1  117   60   161 0.994  16.22
 5.02 Intr - 108091 107957  135  1  0   59  100    96 0.409   8.66
 5.01 Init - 114105 113992  114  0  0   91   93    81 0.817   9.11
 5.00 Prom - 125002 124963   40                              -3.46

 6.05 PlyA - 125203 125198    6                               1.05
 6.04 Term - 128093 127987  107  0  2   63   49   132 0.925   5.37
 6.03 Intr - 130539 130389  151  0  1   91   45    67 0.405   2.44
 6.02 Intr - 131831 131721  111  2  0   29   80    63 0.006   0.18
 6.01 Init - 143640 143599   42  0  0   95  116    25 0.757   6.42
 6.00 Prom - 146759 146720   40                              -6.26

 7.09 PlyA - 149625 149620    6                               1.05
 7.08 Term - 150782 150682  101  0  2   81   35   104 0.631   2.69
 7.07 Intr - 153300 153165  136  0  1   24   99   128 0.488   7.64
 7.06 Intr - 155313 155216   98  1  2   52   99    80 0.921   5.23
 7.05 Intr - 157272 157177   96  1  0   94   96    92 0.977  10.58
 7.04 Intr - 157924 157810  115  1  1  133   60   169 0.999  18.62
 7.03 Intr - 158447 158359   89  0  2  108  100    75 0.687  10.39
 7.02 Intr - 161951 161783  169  2  1   50  110    72 0.991   5.12
 7.01 Init - 164863 164750  114  1  0   91   93    82 0.926   9.21
 7.00 Prom - 177986 177947   40                              -6.26

 8.00 Prom + 180583 180622   40                              -6.56
 8.01 Init + 181110 181223  114  2  0   91   93    67 0.851   7.71
 8.02 Intr + 184057 184225  169  0  1   74  110    59 0.904   6.22
 8.03 Intr + 187212 187300   89  1  2   83  100   105 0.952  10.89
 8.04 Intr + 187739 187853  115  1  1  142   60   162 0.998  18.82
 8.05 Intr + 188530 188625   96  2  0   96   96    83 0.854   9.88
 8.06 Intr + 190489 190538   50  2  2   45  113    33 0.346  -0.10
 8.07 Intr + 192524 192659  136  1  1   33   99   141 0.238   9.84
 8.08 Term + 195047 195147  101  0  2   77   35   140 0.453   5.89
 8.09 PlyA + 196501 196506    6                               1.05

 9.05 PlyA - 196634 196629    6                               1.05
 9.04 Term - 201066 200527  540  0  0   25   50   174 0.397   1.56
 9.03 Intr - 204698 204458  241  1  1   57   56   113 0.557   2.55
 9.02 Intr - 205847 205758   90  1  0   95   57    90 0.624   5.71
 9.01 Intr - 206734 206638   97  2  1   77   -1   120 0.299   1.07

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term -   1582   1569   14  2  2   93   53     1 0.905  -4.54
S.002 Term - 102945 102796  150  0  0   32   28   166 0.922   2.91


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815575r:48196823_48404847|GENSCAN_predicted_peptide_1|95_aa
MRYHYTLITIAKIKDIVTTPNGDKDAEKMDTSLSAAGKRHRHRVSAPRKGLSKEDYIRSD
IFMINSQPSTSSGQSYVYFISNEQNQAGSTRWDEX

>gi568815575r:48196823_48404847|GENSCAN_predicted_CDS_1|285_bp
atgaggtatcactacacacttattacaatagctaaaataaaagacatagtgacaacacca
aatggtgacaaggatgcagagaaaatggacacctcattaagtgctgctgggaagcgccac
cgacacagagtgtcagcccccagaaagggcctttccaaggaggactatatcaggtctgac
attttcatgatcaacagccagccatctaccagttctggccaatcctatgtgtatttcatc
agcaatgaacagaaccaagctgggagcacgagatgggatgaggnn

>gi568815575r:48196823_48404847|GENSCAN_predicted_peptide_2|223_aa
MPMFVKGHHILLLIMGMCHIPEAEARREKEISGNPAHSDSVLPQDLHMASTVPRSEPSAH
ATVTSLPGLSIPRLEEENYEKGMIWGISDKIGYQYHNRIASTSAGMWRSVDPGMFPSFGS
YDGEELEDKSWSKTRTLFKSMKAERGEEAAGETCEASRGWFMRFKERSCLHNIKVQGEAA
NPDGEAAASYPEDLAKVTDEGGYTKEQIFNTDKIAFYIEEDAI

>gi568815575r:48196823_48404847|GENSCAN_predicted_CDS_2|672_bp
atgcccatgttcgtgaaaggtcaccacattctgcttctcatcatgggcatgtgtcatatc
cccgaggctgaggcaagaagagagaaggaaataagtggcaaccctgcacactctgattct
gtcctaccccaggacctgcacatggcttccacggttcctcgaagtgaaccatctgctcat
gccacagtgacttccttgcctgggttatctattcctaggctagaggaagaaaattatgag
aagggaatgatttggggaataagtgacaagattggataccagtaccataacagaatagct
agcacatctgcagggatgtggaggtctgtggatccaggcatgtttccctcttttggttcc
tatgatggagaagagttggaagataagagttggagcaagacccgaactctcttcaagtcc
atgaaagctgagagaggtgaagaagctgcaggagaaacgtgtgaagctagcagaggttgg
ttcatgaggtttaaggaaagaagctgtctccataacataaaagttcaaggtgaagcagca
aaccctgatggagaagctgcagcaagttatccagaagatctagctaaggtcactgatgaa
ggtggctacactaaagaacagattttcaatacggataaaatagccttctatattgaagaa
gatgccatctag

>gi568815575r:48196823_48404847|GENSCAN_predicted_peptide_3|210_aa
MRYHYTLITIDEIKDIVTTPNGDKDAEKLDTSLSAAGKVKSYSHSGKQFARFSSSKTSRA
VMVTQQPSGLPPYVDPRSPGLMVSIMSSSHSIADRVSAPRKGLSKEDYIRTDIFMINSQP
STSSGQSYVYFISNEQNQAGSMRWDEGQTTPGAMNGDNNCAKRAGDDAQIPEKIQKAKWA
EFLDERQSPRLGPSQKQDSEEPDSSLVKGE

>gi568815575r:48196823_48404847|GENSCAN_predicted_CDS_3|633_bp
atgaggtatcactacacacttattacaatagatgaaataaaagacatagtgacaacacca
aatggtgacaaggatgcagagaaactggacacctcattaagtgctgctgggaaggtaaaa
tcttacagccactctggaaagcagtttgcaaggttttcttcttctaaaacctcaagggct
gtgatggtcactcagcagcctagtggattgccaccgtatgtggacccacgttcccctggc
ttaatggtcagcattatgtcatcgtcccacagcatcgcagacagagtatcagcccccaga
aagggcctttccaaggaggactatatcaggactgacattttcatgatcaacagccagccc
tctaccagttctggccaatcctatgtgtatttcatcagcaatgaacagaaccaagctggg
agcatgagatgggacgagggtcagactactcccggtgccatgaacggagacaacaactgt
gcaaagagagctggggatgatgctcaaataccagagaagatacaaaaggctaaatgggca
gagttcctggatgaaagacagagcccgaggttgggacctagtcagaaacaggactcagag
gagcccgactcaagtttggtcaaaggagagtga

>gi568815575r:48196823_48404847|GENSCAN_predicted_peptide_4|184_aa
MDRTKGPVARKSQAVSLAGETAPGAMNGDDTFAKRPRDDAKASEKRSKAFDDIATYFSKK
EWKKMKYSEKISYVYMKRNYKAMTKLGFKVTLPPFMCNKQATDFQGNDFDNDHNRRIQVE
HPQMTFGRLHRIIPKIMPKKPAEDENDSKGVSEASGPQNDGKQLHPPGKANISEKINKRS
GKRK

>gi568815575r:48196823_48404847|GENSCAN_predicted_CDS_4|555_bp
atggacaggaccaagggtcctgtagctagaaagtctcaggctgtttctcttgcaggtgag
actgctcctggtgccatgaacggagacgacacctttgcaaagagacccagggatgatgct
aaagcatcagagaagagaagcaaggcctttgatgatattgccacatacttctctaagaaa
gagtggaaaaagatgaaatactcggagaaaatcagctatgtgtatatgaagagaaactat
aaggccatgactaaactaggtttcaaagtcaccctcccacctttcatgtgtaataaacag
gccacagacttccaggggaatgattttgataatgaccataaccgcaggattcaggttgaa
catcctcagatgactttcggcaggctccacagaatcatcccgaagatcatgcccaagaag
ccagcagaggacgaaaatgattcgaagggagtgtcagaagcatctggcccacaaaacgat
gggaaacaactgcaccccccaggaaaagcaaatatttctgagaagattaataagagatct
ggtaagaggaaatga

>gi568815575r:48196823_48404847|GENSCAN_predicted_peptide_5|440_aa
MRHHYTLITIAKIKDIVTTPNGDEDAEKLDTSLSAAGKTKAAVAGKTRSVSLAGQTAPGA
MNGDDAFARRPRAGSQIPEKIQKAFDDIAKYFSKKEWEKMKSSEKIIYVYMKRKYEAMTK
LGFKATLPPFMCNTGATDLQGNDFDNDRNHRNQGPKRGKHAWTHRLRERKQLVIYEEISD
PEEDDDLGDTTHAHDEKQNVVTFHERGHGCGPLVIRTKGLEPGKSQAVSLAGQTAPGAMN
GDDAFARRPRVDAQIPEKIQKAFDDIAKYFSKEEWEKMKASEKILYVYMKRKYEAMTKLG
FKATLPPFMCNKRTADFQGNDFDNDYNHGHQGWENQEAKVMGYGRSKQLQSCLHLGLVFQ
VHDPAHSDSALPQDLDTPSMVPRSEPSAHATVTSSPGLCIPRLEEETATATPPFSNHHLD
QPAAINTEARPSTNKKSVTH

>gi568815575r:48196823_48404847|GENSCAN_predicted_CDS_5|1323_bp
atgaggcatcactacacacttattacaatagctaaaataaaagacatagtgacaacacca
aatggtgatgaggatgcagagaaactggacacctcattaagtgctgctgggaagaccaaa
gctgctgtggctggaaagactcggtctgtttctcttgcaggacagactgctcccggtgcc
atgaacggagacgatgcctttgcaaggagacctagggctggttctcaaataccagagaag
atccaaaaggccttcgatgatattgccaaatacttctctaagaaagagtgggaaaagatg
aaatcctcggagaaaatcatctatgtgtatatgaagagaaagtatgaggccatgactaaa
ctaggtttcaaggctaccctcccacctttcatgtgtaatacaggggccacagacctccag
gggaatgattttgataatgaccgtaaccacaggaatcagggacccaaaagggggaaacat
gcctggacccacagactgcgtgagagaaagcagctggtgatttatgaagagatcagcgac
cctgaagaagacgacgacctcggggatacgacacatgcccatgatgagaagcagaatgtg
gtgacctttcacgaacgtgggcatggctgcggacccctcgtcatcaggaccaaaggtctt
gagcctggaaagtctcaggcagtttctcttgcaggtcagactgctcccggtgccatgaat
ggagacgacgcctttgcaaggagacccagggttgatgctcaaataccagagaagatacaa
aaggccttcgatgatattgccaaatacttctctaaggaagagtgggaaaagatgaaagcc
tcagagaaaatcctctatgtgtatatgaagagaaagtatgaggccatgactaaactaggt
ttcaaggcaaccctcccacctttcatgtgtaataaacggaccgcagacttccaggggaat
gattttgataatgactataaccatgggcatcagggctgggagaaccaggaggccaaggtg
atgggctatggacggtcaaaacagctccaatcctgcctccacctggggctggtgtttcaa
gtccatgaccctgcacactctgattctgccctaccccaggacctggacacgccttccatg
gttcctcgaagtgaaccatctgctcatgccacagtgacttcctcgcctggtttatgcatt
cctaggctagaagaagaaactgccacagccactccacccttcagcaaccaccaccttgat
cagccagcagccatcaacaccgaggcaagaccctccaccaacaagaagagtgtaactcac
tga

>gi568815575r:48196823_48404847|GENSCAN_predicted_peptide_6|136_aa
MDLCRLSLSHVKGKNPKMVQRAKAKMPNHLLQNPAPGLKCIVSIKIKTEGQGLHTPSTVP
RSEPSAHATVTSSPGLSIPRLEEGVARISGLTWGLGTHSILETATATPIFSNHHLDQPAA
INTEARPSTSKKSVTH

>gi568815575r:48196823_48404847|GENSCAN_predicted_CDS_6|411_bp
atggacctgtgccggttgtctttatcccatgtcaagggaaagaacccgaaaatggttcag
agagcgaaggccaagatgcccaaccacctgctgcagaatcctgctccaggactgaagtgt
atagtctctatcaaaataaaaactgaaggccagggcctgcacacgccttccacggttcct
cgaagtgaaccatctgctcatgctacagtgacttcctcacctggtttatcgattcctagg
ctagaggaaggtgtggcccgcatatcagggctgacctggggtttgggaacccacagcatc
ctggaaactgccacagccactccaatcttcagcaaccaccaccttgatcagccagcagcc
atcaacaccgaggcaagaccctccaccagcaaaaagagtgtgactcactga

>gi568815575r:48196823_48404847|GENSCAN_predicted_peptide_7|305_aa
MRYHYTLITIAKIKDIVTTPNGDKDAEKLDTLLSAAGKHCRHRVSTSRKGLSKEDYIRSD
IFMINSQPSTSSGQSYLYFISNEQNQAGSTRWDKGQTTPCAMNGDDTFARRPTVGAQIPE
KIQKAFDDIAKYFSKEEWEKMKVSEKIVYVYMKRKYEAMTKLGFKAILPSFMRNKRVTDF
QGNDFDNDPNRGNQDDFRQAPGNLPEGEYLSDLKDQRTFVPPRMRTLIMPKKPAEEGNVS
KEVPEASGPQNDGKQLCPPGKPTTSEKINMISGPKRGEHAWTHRLRERKQLVIYEEISDP
EEDDE

>gi568815575r:48196823_48404847|GENSCAN_predicted_CDS_7|918_bp
atgaggtatcactacacacttattacaatagctaaaataaaagacatagtgacaacacca
aatggtgacaaggatgcagagaaactggacaccttattaagtgctgctgggaagcactgc
agacacagagtatcaacctccagaaagggcctttccaaggaggactatatcaggtctgac
attttcatgatcaacagccagccatctaccagttctggccaatcctatctgtatttcatc
agcaatgaacagaaccaagctgggagcacgagatgggacaagggtcagactactccctgt
gccatgaacggagatgacacctttgcaaggagacccacggttggtgctcaaataccagag
aagatacaaaaggccttcgatgatattgccaaatacttctctaaggaagagtgggaaaag
atgaaagtctcggagaaaatcgtctatgtgtatatgaagagaaagtatgaggccatgact
aaactaggtttcaaggccatcctcccatctttcatgcgtaataaacgggtcacagacttc
caggggaatgattttgataatgaccctaaccgtgggaatcaggatgactttcggcaggct
ccagggaatcttcccgaaggtgagtatctttcagatctaaaggaccagagaacctttgtc
cctccaaggatgcgaacactgatcatgcccaagaagccagcagaggaaggaaatgtttcg
aaggaagtgccagaagcatctggcccacaaaacgatgggaaacagctgtgccccccggga
aaaccaactacctctgagaagattaacatgatatctggacccaaaaggggggaacatgcc
tggacccacagactgcgtgagagaaagcagctggtgatttatgaagagatcagcgatcct
gaggaagatgatgagtaa

>gi568815575r:48196823_48404847|GENSCAN_predicted_peptide_8|289_aa
MRYHYTLITIAKIKDIVTTPNGDKDAEKMDTSLSAAGKHRRHRVSAPRKGLSKEDYIRSD
IFMINSQPSTSSGHSCLYFINNKQNQAGSTRWDEGETAPSAMNGDDAFARRPRDDAQISE
KLRKAFDDIAKYFSKKEWEKMKSSEKIVYVYMKLNYEVMTKLGFKVTLPPFMRSKRAADF
HGNDFGNDRNHRNQVERPQMTFGSLQRIFPKIMPKKPAEEENGLKEVPEASGPQNDGKQL
CPPGNPSTLEKINKTSGPKRGKHAWTHRLRERKQLVVYEEISDPEEDDE

>gi568815575r:48196823_48404847|GENSCAN_predicted_CDS_8|870_bp
atgaggtatcactacacacttattacaatagctaaaataaaagacatagtgacaacacca
aatggtgacaaggatgcagagaaaatggacacctcattaagtgctgctgggaagcaccgc
agacacagagtatcagcccccagaaagggcctttccaaggaggactatatcaggtctgac
attttcatgatcaacagccagccatctaccagttctggccactcctgtctgtatttcatc
aacaataaacagaaccaagctgggagcacgagatgggacgagggtgagactgctcccagt
gccatgaacggagacgacgcctttgcaaggagacccagggatgatgctcaaatatcagag
aagttacgaaaggccttcgatgatattgccaaatacttctctaagaaagagtgggaaaag
atgaaatcctcggagaaaatcgtctatgtgtatatgaagctaaactatgaggtcatgact
aaactaggtttcaaggtcaccctcccacctttcatgcgtagtaaacgggctgcagacttc
cacgggaatgattttggtaacgatcgaaaccacaggaatcaggttgaacgtcctcagatg
actttcggcagcctccagagaatcttcccgaagatcatgcccaagaagccagcagaggaa
gaaaatggtttgaaggaagtgccagaggcatctggcccacaaaatgatgggaaacagctg
tgccccccgggaaatccaagtaccttggagaagattaacaagacatctggacccaaaagg
gggaaacatgcctggacccacagactgcgtgagagaaagcagctggtggtttatgaagag
atcagcgaccctgaggaagatgacgagtaa

>gi568815575r:48196823_48404847|GENSCAN_predicted_peptide_9|322_aa
XPKRGKHAWTHRLRERKQLVVYEEISDPEEDDDLGDMTHAHDEKQNVVTFHEHGHGCGPL
VIRDYTLQSWSRILQQVVGHLGLCSLNDFQVQGLGRSIWEYVEGDTDEIVIWGTWRNEED
ACTVDRDGQGIEESTQSPCRGATLPMTFLTELEKTTLKFIWNQKRAHIAKSILSQKNKAG
GITLPDFKLYYKATVTKTACYWYQNRDIDQRNRTEPSEIMPHIYNHLIFDKPDKNKQWGK
DSLFNKWCWENWLAICRKLKLDPFLTPYTKINSRWIKDFNIRPKTIKTLEENLGNTIQDI
GMGKDFMTKTPKAMATKAKIDK

>gi568815575r:48196823_48404847|GENSCAN_predicted_CDS_9|969_bp
ngacccaaaagggggaaacatgcctggacccacagactgcgtgagagaaagcagctggtg
gtttatgaagagatcagcgaccctgaggaagatgacgacctcggggatatgacacatgcc
catgatgagaagcagaacgtggtgacctttcacgaacatgggcatggctgcggacccctc
gtcatcagagactatacacttcagtcctggagcaggattctgcagcaggtggttgggcat
ctgggcctttgctctctgaatgattttcaagttcaagggctgggacggtccatttgggag
tatgtggaaggagacacagatgaaatcgtcatctggggaacgtggaggaatgaggaagat
gcgtgcactgtagaccgtgatggacagggaatagaagagtccactcagtctccatgcagg
ggagcaacgctaccaatgactttcctcacagaattggaaaaaactactttaaagttcata
tggaaccaaaaaagagcccacattgccaagtcaatcctaagccaaaagaacaaagccgga
ggcatcacgctacctgacttcaaactatactacaaggctacagtaaccaaaacagcttgt
tactggtaccaaaacagagatatagatcaaaggaacagaacagagccctcagaaataatg
ccacatatctacaaccatctgatctttgacaaacctgacaaaaacaagcaatggggaaag
gattccctatttaataaatggtgctgggaaaactggctagccatatgtagaaagctgaaa
ctggatcccttccttacaccttatacaaaaattaattcaagatggattaaagacttcaac
attagacctaaaaccataaaaaccctagaagaaaacttaggcaataccattcaggacata
ggcatgggcaaggacttcatgactaaaacaccaaaagcaatggcaacaaaagccaaaatt
gacaaatga