GENSCAN 1.0	Date run:  4-Nov-116	Time: 07:56:39

Sequence gi568815575f:48009980_48219631 : 209652 bp : 44.52% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +  28706  28822  117  1  0   73   57    99 0.218   5.50
 1.02 Intr +  36248  36379  132  1  0   99   55    60 0.385   4.64
 1.03 Term +  38420  38593  174  1  0   38   47   138 0.964   2.46
 1.04 PlyA +  40555  40560    6                               1.05

 2.05 PlyA -  42478  42473    6                               1.05
 2.04 Term -  50224  48489 1736  2  2  126   38   672 0.918  53.81
 2.03 Intr -  50566  50471   96  2  0   74  111    12 0.775   2.08
 2.02 Intr -  50966  50840  127  2  1    7   82   173 0.970   8.85
 2.01 Init -  56907  56893   15  0  0   47  111    14 0.621  -0.19
 2.00 Prom -  75492  75453   40                              -3.16

 3.00 Prom +  90961  91000   40                              -1.46
 3.01 Init +  92389  92459   71  0  2   53   48    87 0.388   1.72
 3.02 Intr +  99949 100069  121  1  1  115  100   123 0.933  16.70
 3.03 Intr + 100504 100618  115  0  1   93   60   152 0.999  12.92
 3.04 Intr + 101281 101376   96  2  0   98   96   121 0.933  13.88
 3.05 Intr + 103214 103263   50  0  2   37  113    36 0.546  -0.60
 3.06 Intr + 107033 107168  136  1  1   46   99   130 0.329  10.04
 3.07 Intr + 109555 109651   97  2  1   90   32   112 0.729   4.87
 3.08 Term + 110121 110247  127  0  1   95   48    70 0.377   1.46
 3.09 PlyA + 110688 110693    6                               1.05

 4.00 Prom + 114950 114989   40                              -7.76
 4.01 Init + 120709 120853  145  0  1   86   37   334 0.989  28.38
 4.02 Intr + 121282 121440  159  2  0  115  115   211 0.997  26.46
 4.03 Intr + 122271 122349   79  1  1  127  119    84 0.811  14.01
 4.04 Intr + 147900 148035  136  0  1  117  100    71 0.971  11.77
 4.05 Term + 148469 148543   75  1  0  114   43   108 0.993   6.74
 4.06 PlyA + 149268 149273    6                               1.05

 5.03 PlyA - 151247 151242    6                               1.05
 5.02 Term - 153247 153141  107  2  2   70   48   115 0.911   4.27
 5.01 Init - 155849 155759   91  2  1  103  106    40 0.940   8.19
 5.00 Prom - 163163 163124   40                              -2.46

 6.09 PlyA - 163785 163780    6                               1.05
 6.08 Term - 177752 177652  101  0  2   82   35   103 0.107   2.69
 6.07 Intr - 180289 180154  136  1  1   36   99   114 0.965   7.44
 6.06 Intr - 182383 182253  131  2  2   47  113    -3 0.578  -1.49
 6.05 Intr - 184245 184150   96  1  0   94   96    74 0.986   8.78
 6.04 Intr - 184875 184761  115  0  1  108   60   178 0.999  17.02
 6.03 Intr - 185399 185311   89  0  2   73  100    83 0.796   7.69
 6.02 Intr - 188866 188698  169  1  1   84  110    87 0.873  10.02
 6.01 Init - 190231 190118  114  1  0   91   93    67 0.924   7.71
 6.00 Prom - 202374 202335   40                              -1.86

 7.00 Prom + 203881 203920   40                              -5.06
 7.01 Init + 204529 204661  133  0  1   65   99   135 0.057  12.60
 7.02 Intr + 206880 206976   97  1  1   85   32   104 0.087   3.57
 7.03 Term + 207451 207577  127  1  1   95   48    75 0.047   1.96
 7.04 PlyA + 208012 208017    6                               1.05


Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init +  61460  61547   88  1  1   90   92    39 0.837   5.37
S.002 Init + 144633 144778  146  2  2   79   41    92 0.827   3.19
S.003 Init - 171202 171161   42  1  0   95  116    27 0.823   6.63


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815575f:48009980_48219631|GENSCAN_predicted_peptide_1|140_aa
MEEVMQRVKVMLEGTEKKEDTAKDSKKGKNRTLAKKSYRAEKDTKGPGSQHEYLGEDTGS
EEQPALHLSHSAISIQRNTNQDLHDYARSLKGEAICLLKLLLFLEPDKVEWKPANLSNII
LGDILGTSYDDELDQLLMTE

>gi568815575f:48009980_48219631|GENSCAN_predicted_CDS_1|423_bp
atggaggaagttatgcagagagtgaaggtgatgctggaggggacagagaaaaaagaggac
acagcaaaggacagtaaaaagggtaagaataggacgttggcaaagaaatcctacagggca
gaaaaagacacaaagggtccaggaagccagcatgaatacctgggtgaagacacaggttcc
gaggaacagccagcactccatctgagtcacagcgccattagtattcaaagaaacacaaat
caggatttacacgattatgccagatccctgaaaggtgaggccatatgtctgctgaaacta
cttctctttttggaacctgacaaggttgaatggaagcctgcaaacctgagtaacatcatt
ctgggagacattttgggtacatcatatgatgatgaactggaccaattgttgatgactgag
tga

>gi568815575f:48009980_48219631|GENSCAN_predicted_peptide_2|657_aa
MIESQEPVTFEDVAVDFTQEEWQQLNPAQKTLHRDVMLETYNHLVSVGCSGIKPDVIFKL
EHGKDPWIIESELSRWIYPDRVKGLESSQQIISGELLFQREILERAPKDNSLYSVLKIWH
IDNQMDRYQGNQDRVLRQVTVISRETLTDEMGSKYSAFGKMFNRCTDLAPLSQKFHKFDS
CENSLKSNSDLLNYNRSYARKNPTKRFRCGRPPKYNASCSVPEKEGFIHTGMEPYGDSQC
EKVLSHKQAHVQYKKFQAREKPNVCSMCGKAFIKKSQLIIHQRIHTGEKPYVCGDCRKAF
SEKSHLIVHQRIHTGEKPYECTKYGRAFSRKSPFTVHQRVHTGEKPYECFECPKAFSQKS
HLIIHQRVHTREKPFECSECRKAFCEMSHLFIHQITHTGKKPYECTECGKTFPRKTQLII
HQRTHTGEKPYKCGECGKTFCQQSHLIGHQRIHTGEKPYVCTDCGKAFSQKSHLTGHQRL
HTGEKPYMCTECGKSFSQKSPLIIHQRIHTGEKPYQCGECGKTFSQKSLLIIHLRVHTGE
KPYECTECGRAFSLKSHLILHQRGHTGEKPYECSECGKAFCGKSPLIIHQKTHPREKTPE
CAESGMTFFWKSQMITYQRRHTGEKPSRCSDCGKAFCQHVYFTGHQNPYRKDTLYIC

>gi568815575f:48009980_48219631|GENSCAN_predicted_CDS_2|1974_bp
atgattgagtcccaggaaccagtgacatttgaggatgtggctgtggacttcacgcaggaa
gagtggcagcagttgaatcctgctcagaagaccctgcatagggatgtgatgctggagacc
tataatcacctggtctccgtggggtgttcaggtataaaaccagatgtaatctttaagttg
gaacatggaaaggacccatggatcatagagagtgagttgtcaaggtggatctacccagac
agagtgaaaggccttgaatcttcccagcagatcatttctggagaacttttatttcaaagg
gagatactagaaagagccccaaaggataattcattgtactctgttttaaaaatctggcat
attgataatcagatggatagatatcaaggaaatcaagacagagttttgaggcaggtcaca
gtcatcagtcgtgaaacattgactgatgagatgggttccaagtacagtgcatttgggaaa
atgttcaatcggtgcacagaccttgctcctttaagtcaaaaattccataagtttgattca
tgtgaaaatagcttgaagtctaattcagacttactaaattataacaggagctatgcaaga
aagaaccccactaagagatttagatgtgggagaccacctaagtataatgcttcctgttct
gtgcctgagaaggaaggcttcattcatactggaatggagccctatggagatagtcaatgt
gaaaaagttctcagtcataagcaagcccatgttcagtataagaaatttcaagccagagag
aaacccaatgtttgtagtatgtgtgggaaagcctttatcaagaagtcacagctcattata
catcaaagaattcatactggagagaaaccatatgtatgtggagattgtaggaaagccttc
agtgagaaatcacacctcattgtgcatcagaggattcatactggggagaaaccctatgaa
tgtactaagtatggaagagcattctcccggaagtcacctttcactgttcatcagagagtc
catactggagagaaaccctatgagtgttttgagtgtccaaaagctttctcccagaagtca
catctaattatacatcagagagttcataccagagagaagccctttgaatgcagtgaatgc
aggaaagccttctgtgagatgtctcacctttttatacaccagataactcatactgggaag
aagccctatgaatgtactgaatgtgggaagaccttccctcggaaaacacagctcattata
catcagagaacgcatactggagagaagccctataagtgtggtgaatgtgggaaaactttc
tgccaacagtcccacctcataggacatcaaagaattcatacaggagaaaaaccttatgtg
tgtactgactgtgggaaggccttttcccagaagtcacacctcactggccatcaaagactt
catactggagagaaaccttatatgtgtactgaatgtggaaaatccttctctcagaaatca
cctcttatcatacaccagagaattcatacaggggagaaaccttatcagtgtggtgaatgt
ggcaaaaccttctcccagaaatcactcctcattattcatctgagagttcacacaggggag
aaaccttatgagtgtactgagtgtgggagggccttttccctgaagtcacatctcattcta
catcagagaggtcatactggagagaaaccctatgaatgtagtgaatgtggaaaggccttc
tgtggaaagtctccactcattatacatcagaaaactcatcctagggagaaaacccctgaa
tgtgctgagtctggaatgacttttttctggaaatcacagatgattacatatcagagaaga
cacactggggagaaaccctccagatgcagtgactgtgggaaggcattctgccagcatgta
tactttactgggcatcagaatccatataggaaagacaccttgtatatatgctga

>gi568815575f:48009980_48219631|GENSCAN_predicted_peptide_3|270_aa
MIGSFLKPSLEADAGAMLAQSAELTGKTQAVSLAGQSAPGAMNGDDAFAKRPRDDAKASE
KRSKAFDDIAKYFSKEEWEKMKFSEKISCVHMKRKYEAMTKLGFNVTLSLFMRNKRATDS
QRNDSDNDRNRGNEVERPQMTFGRLQRIIPKIMPEKPAEEGSDSKGVPEASGPQNDGKKL
CPPGKASSSEKIHERSGPKRGKHAWTHRLRERKQLVIYEEISDPEEDDNLRDTTHAHDEK
QNVVTFHERGHGCGPLVIRCIASESKCSQQ

>gi568815575f:48009980_48219631|GENSCAN_predicted_CDS_3|813_bp
atgattggaagcttcctgaagccctcactagaagcagatgctggtgctatgcttgcacag
tctgcagaactgactggaaagactcaggctgtttctcttgcaggtcagagtgctcctggt
gccatgaacggagacgacgcctttgcaaagagacccagggatgatgctaaagcatcagag
aagagaagcaaggccttcgatgatattgccaaatacttctctaaggaagagtgggaaaag
atgaaattctcggagaaaatcagctgtgtgcatatgaagagaaagtatgaggccatgact
aaactaggtttcaacgtcaccctctcacttttcatgcgtaataaacgggccacagactct
cagaggaatgattctgataatgaccgtaaccgtgggaatgaggttgaacgtcctcagatg
acttttggcaggctccagagaatcatcccgaagatcatgcccgagaagccagcagaggaa
ggaagtgattcgaagggagtgccagaagcatctggcccacagaacgatgggaaaaagctg
tgcccgccgggaaaagcaagtagctctgagaagattcacgagagatctggacccaaaagg
gggaaacatgcctggacccacagactgcgtgagagaaagcagctggtgatttatgaagag
atcagcgaccctgaggaagatgacaacctcagggatacgacacatgcccatgatgagaag
cagaacgtggtgacctttcacgaacgtgggcatggctgcggacccctcgtcatcaggtgt
atagcaagtgaaagcaagtgttcacaacagtga

>gi568815575f:48009980_48219631|GENSCAN_predicted_peptide_4|197_aa
MKAWGTVVVTLATLMVVTVDAKIYERCELAARLERAGLNGYKGYGVGDWLCMAHYESGFD
TAFVDHNPDGSSEYGIFQLNSAWWCDNGITPTKNLCHMDCHDLLNRHILDDIRCAKQIVS
SQNGLSAWTKGPAAGKTQAVSLAGQIAPSATNGDDAFARRPRVGSQIPENMQKVFDDIAK
YFSKKECEKTKAWEKII

>gi568815575f:48009980_48219631|GENSCAN_predicted_CDS_4|594_bp
atgaaggcctggggcactgtggtagtgaccttggccacgctgatggttgtcactgtggat
gccaagatctatgaacgctgcgagctggcggcaagactggagagagcagggctgaacggc
tacaagggctacggcgttggagactggctgtgcatggctcattatgagagtggctttgac
accgccttcgtggaccacaatcctgatggcagcagtgaatatggcattttccaactgaat
tctgcctggtggtgtgacaatggcattacacccaccaagaacctctgccacatggattgt
catgacctgctcaatcgccatattctggatgacatcaggtgtgccaagcagattgtgtcc
tcacagaatgggctttctgcctggaccaaaggtcctgcagctggaaagactcaggctgtt
tctcttgcaggtcagattgctcccagtgccacgaatggagacgacgcctttgcaaggaga
cccagggttggttctcaaataccagagaacatgcaaaaggtcttcgatgatattgccaaa
tatttctctaagaaagaatgcgaaaagacgaaagcctgggagaaaatcatctag

>gi568815575f:48009980_48219631|GENSCAN_predicted_peptide_5|65_aa
MPMFVKGHHILLLIMGMCHIPEAEARGEKERTATATPPFSNHHLDQPAAINTEARPSTSK
KSVTY

>gi568815575f:48009980_48219631|GENSCAN_predicted_CDS_5|198_bp
atgcccatgttcgtgaaaggtcaccacattctgcttctcatcatgggcatgtgtcatatc
cctgaggctgaggcaagaggagagaaggaaagaactgccacagccactccacccttcagc
aaccaccaccttgatcagccagcagccatcaacactgaggcaagaccctccaccagtaaa
aagagtgtgacttactga

>gi568815575f:48009980_48219631|GENSCAN_predicted_peptide_6|316_aa
MRYHYTLITIAKIKDIVTTPNGDKDAEKMDTSLSAAGKRHRHRVSAPRKGLSKEDYIRSD
IFMINSQPSTSSGQSYVYFISNEQNQAGSTRWDEGQSAPGAMNGDDAFVRRPRVGSQIPE
KMQKAFDDIAKYFSEKEWEKMKASEKIIYVYMKRKYEAMTKLGFKATLPPFMRNKRVADF
QGNDFDNDPNRGNQECPHATEVSLEFGNLYQQRKILMYSLSVEHPQMTFGRLQGIFPKIT
PEKPAEEGNDSKGVPEASGPQNNGKQLRPSGKLNTSEKVNKTSGPKRGKHAWTHRVRERK
QLVIYEEISDPQEDDE

>gi568815575f:48009980_48219631|GENSCAN_predicted_CDS_6|951_bp
atgaggtatcactacacacttattacaatagctaaaataaaagacatagtgacaacacca
aatggtgacaaggatgcagagaaaatggacacctcattaagtgctgctgggaagcgccac
cgacacagagtgtcagcccccagaaagggcctttccaaggaggactatatcaggtctgac
attttcatgatcaacagccagccatctaccagttctggccaatcctatgtgtatttcatc
agcaatgaacagaaccaagctgggagcacgagatgggatgagggacagagtgctcccggt
gccatgaacggagacgatgcctttgtacggagacctagggttggttctcaaataccagag
aagatgcaaaaggccttcgatgatattgccaaatacttctctgagaaagagtgggaaaag
atgaaagcctcggagaaaatcatctatgtgtatatgaagagaaagtatgaggccatgact
aaactaggtttcaaggccaccctcccacctttcatgcgtaataaacgggtcgcagacttc
caggggaatgattttgataatgaccctaaccgtgggaatcaggaatgccctcatgcaact
gaagtctctctagagtttggaaatctttaccaacaaagaaaaattctgatgtattctctt
tcagttgaacatcctcagatgactttcggcaggctccagggaatcttcccgaagatcacg
cccgagaagccagcagaggaaggaaatgattcgaagggagtgccagaagcatctggccca
cagaacaatgggaaacagctgcgcccctcaggaaaactaaatacctctgagaaggttaac
aagacatctggacccaaaagggggaaacatgcctggacccacagagtgcgtgagagaaag
caactggtgatttatgaagagatcagcgaccctcaggaagatgacgagtaa

>gi568815575f:48009980_48219631|GENSCAN_predicted_peptide_7|118_aa
MPEKPAEEGNDSKEVLEASGPQNDGKQLCPPGKASSSEKIHERSGTKRGKHAWIHRLRER
KQLVIYEEISDPEEDDNLGDMTHAHDEKQNVVTFHEHGHGCGPLIIRCIASESKCSQQ

>gi568815575f:48009980_48219631|GENSCAN_predicted_CDS_7|357_bp
atgcctgagaagccagcagaggaaggaaatgattcaaaggaagtgctagaagcatctggc
ccacagaacgatgggaaacagctgtgccccccgggaaaagcaagtagctctgagaagatt
cacgagagatctggaaccaaaagagggaaacatgcctggatccacagactgcgtgagaga
aagcaactggtgatttatgaagagatcagcgaccctgaggaagacgacaacctcggggat
atgacacatgcccatgatgagaagcagaatgtggtgacctttcacgaacatgggcatggc
tgcggacccctcatcatcaggtgcatagcaagtgaaagcaagtgttcacaacagtga