Multiple alignment for pF1KE1191
Check alignment(s).
#  0    Query: pF1KE1191, 824 aa
#  1    CCDS2048.1 NPAS2 gene_id:4862|Hs108|chr2    (824 aa)
#  2    CCDS3500.1 CLOCK gene_id:9575|Hs108|chr4    (846 aa)

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        exp       sw-scr    id%      from      to
   1    1.2e-173    5537   99.9         1     824
   2    1.4e-77     2567   50.9        26     844

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   0  (    1)    MDEDEKDRAKRASRNKSEKKRRDQFNVLIKELSSMLPGNTRKMDKTTVLEKVIGFLQKHN
   1  (    1)    MDEDEKDRAKRASRNKSEKKRRDQFNVLIKELSSMLPGNTRKMDKTTVLEKVIGFLQKHN
   2  (   26)    VEEDDKDKAKRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHK

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   0  (   61)    EVSAQTEICDIQQDWKPSFLSNEEFTQLMLEALDGFIIAVTTDGSIIYVSDSITPLLGHL
   1  (   61)    EVSAQTEICDIQQDWKPSFLSNEEFTQLMLEALDGFIIAVTTDGSIIYVSDSITPLLGHL
   2  (   86)    EITAQSDASEIRQDWKPTFLSNEEFTQLMLEALDGFFLAIMTDGSIIYVSESVTSLLEHL

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   0  (  121)    PSDVMDQNLLNFLPEQEHSEVYKILSSHMLVTDSPSPEYLKSDSDLEFYCHLLRGSLNPK
   1  (  121)    PSDVMDQNLLNFLPEQEHSEVYKILSSHMLVTDSPSPEYLKSDSDLEFYCHLLRGSLNPK
   2  (  146)    PSDLVDQSIFNFIPEGEHSEVYKILSTHLLESDSLTPEYLKSKNQLEFCCHMLRGTIDPK

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   0  (  181)    EFPTYEYIKFVGNFRSYNNVPSPSCNGFDNTLSRPCRVPLGKEVCFIATVRLATPQFLKE
   1  (  181)    EFPTYEYIKFVGNFRSYNNVPSPSCNGFDNTLSRPCRVPLGKEVCFIATVRLATPQFLKE
   2  (  206)    EPSTYEYVKFIGNFKSLNSVSSSAHNGFEGTIQRTHRPSYEDRVCFVATVRLATPQFIKE

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   0  (  241)    MCIVDEPLEEFTSRHSLEWKFLFLDHRAPPIIGYLPFEVLGTSGYDYYHIDDLELLARCH
   1  (  241)    MCIVDEPLEEFTSRHSLEWKFLFLDHRAPPIIGYLPFEVLGTSGYDYYHIDDLELLARCH
   2  (  266)    MCTVEEPNEEFTSRHSLEWKFLFLDHRAPPIIGYLPFEVLGTSGYDYYHVDDLENLAKCH

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   0  (  301)    QHLMQFGKGKSCCYRFLTKGQQWIWLQTHYYITYHQWNSKPEFIVCTHSVVSYADVRVER
   1  (  301)    QHLMQFGKGKSCCYRFLTKGQQWIWLQTHYYITYHQWNSKPEFIVCTHSVVSYADVRVER
   2  (  326)    EHLMQYGKGKSCYYRFLTKGQQWIWLQTHYYITYHQWNSRPEFIVCTHTVVSYAEVRAER

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                                                   *                         
   0  (  361)    RQELALEDP-PSEALHSSALKDKGSSLEPRQHFNALDVGASGLNTSHSPSASSRSSHKSS
   1  (  361)    RQELALEDP-PSEALHSSALKDKGSSLEPRQHFNTLDVGASGLNTSHSPSASSRSSHKSS
   2  (  386)    RRELGIEESLPETAADKS--QDSGS--DNRINTVSLKEALERFDHSPTPSASSRSSRKSS

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   0  (  420)    HTAMSEPTSTPTKLMAEASTPALPRSATLPQELPVPGLSQAATMPAPLPSPSSCDLTQQL
   1  (  420)    HTAMSEPTSTPTKLMAEASTPALPRSATLPQELPVPGLSQAATMPAPLPSPSSCDLTQQL
   2  (  442)    HTAVSDPSSTPTKIPTDTSTP--PRQHLPAHEKMVQRRSSFSSQSINSQSVGS-SLTQPV

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   0  (  480)    LPQTVLQSTPAPMAQF--SAQFSMFQTIKDQLEQRTRILQANIRWQQEELHKIQEQLCLV
   1  (  480)    LPQTVLQSTPAPMAQF--SAQFSMFQTIKDQLEQRTRILQANIRWQQEELHKIQEQLCLV
   2  (  499)    MSQATNLPIPQGMSQFQFSAQLGAMQHLKDQLEQRTRMIEANIHRQQEELRKIQEQLQMV

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   0  (  538)    QDSNVQMFLQQPAVSLSFSSTQRPEAQQQ-LQQRSAAVTQPQLGAGPQLPGQISSAQV-T
   1  (  538)    QDSNVQMFLQQPAVSLSFSSTQRPEAQQQ-LQQRSAAVTQPQLGAGPQLPGQISSAQV-T
   2  (  559)    HGQGLQMFLQQSNPGLNFGSVQLSSGNSSNIQQLAPINMQGQVVPTNQIQSGMNTGHIGT

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   0  (  596)    SQHLLRESSV--ISTQGPKPMRSSQLMQSS--GRSGSSLVSP-FSSATAALPPSLNLTT-
   1  (  596)    SQHLLRESSV--ISTQGPKPMRSSQLMQSS--GRSGSSLVSP-FSSATAALPPSLNLTT-
   2  (  619)    TQHMIQQQTLQSTSTQSQQNVLSGHSQQTSLPSQTQSTLTAPLYNTMVISQPAAGSMVQI

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   0  (  650)    PASTSQDASQCQPSPDFSHDRQLRLLLSQPIQPMM---PGSCDARQ-PSEVSRTGRQVKY
   1  (  650)    PASTSQDASQCQPSPDFSHDRQLRLLLSQPIQPMM---PGSCDARQ-PSEVSRTGRQVKY
   2  (  679)    PSSMPQNSTQSAAVTTFTQDRQIRFSQGQQLVTKLVTAPVACGAVMVPSTM---------

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   0  (  706)    AQSQTVFQNPDAHPANSSSAPMPVLLMGQAVLHPSFPASQPSPLQPAQAR-QQPPQHYLQ
   1  (  706)    AQSQTVFQNPDAHPANSSSAPMPVLLMGQAVLHPSFPASQPSPLQPAQAR-QQPPQHYLQ
   2  (  730)    LMGQVVTAYPTFATQQQQSQTLSVTQQQQQ--QSSQEQQLTSVQQPSQAQLTQPPQQFLQ

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   0  (  765)    VQAPTSLHSEQQDSLLLST-YSQQPGTL--GYPQPPPAQPQPLRPPRRVSSLSESSGLQQ
   1  (  765)    VQAPTSLHSEQQDSLLLST-YSQQPGTL--GYPQPPPAQPQPLRPPRRVSSLSESSGLQQ
   2  (  788)    TS--RLLHGNPSTQLILSAAFPLQQSTFPQSHHQQHQSQQQQQLSRHRTDSLPDPSKVQ.

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   0  (  822)    PPR
   1  (  822)    PPR
   2  (    -)    ...

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