#  0    Query: pF1KB8284, 412 aa
#  1    CCDS2565.1 BHLHE40 gene_id:8553|Hs108|chr3    (412 aa)
#  2    CCDS8706.1 BHLHE41 gene_id:79365|Hs108|chr12    (482 aa)

//
        exp       sw-scr    id%      from      to
   1    2.5e-130    2800  100.0         1     412
   2    2.6e-31      838   42.6        14     434

//
                                                                             
   0  (    1)    MERIPSAQPPPACLPKAPGLEHGDLPGMYPAHMYQVYKSRRGIKRSEDSKETYKLPHRLI
   1  (    1)    MERIPSAQPPPACLPKAPGLEHGDLPGMYPAHMYQVYKSRRGIKRSEDSKETYKLPHRLI
   2  (   14)    ...................LEHRDFIGLDYSSLYMC-KPKRSMKR-DDTKDTYKLPHRLI

//
                                                                             
   0  (   61)    EKKRRDRINECIAQLKDLLPEHLKLTTLGHLEKAVVLELTLKHVKALTNLIDQQQQKIIA
   1  (   61)    EKKRRDRINECIAQLKDLLPEHLKLTTLGHLEKAVVLELTLKHVKALTNLIDQQQQKIIA
   2  (   53)    EKKRRDRINECIAQLKDLLPEHLKLTTLGHLEKAVVLELTLKHLKALTALTEQQHQKIIA

//
                                                                             
   0  (  121)    LQSGLQAGELSGRN-VETGQEMFCSGFQTCAREVLQYLAKHEN--TRDLKSSQLVTHLHR
   1  (  121)    LQSGLQAGELSGRN-VETGQEMFCSGFQTCAREVLQYLAKHEN--TRDLKSSQLVTHLHR
   2  (  113)    LQNG----ERSLKSPIQSDLDAFHSGFQTCAKEVLQYLSRFESWTPREPRCVQLINHLHA

//
                                                                             
   0  (  178)    VVSELL---QGGTSRKP---SDPAPKVMDFKEKPSSPAKGSE-GPGKNCVPVIQRTFAHS
   1  (  178)    VVSELL---QGGTSRKP---SDPAPKVMDFKEKPSSPAKGSE-GPGKNCVPVIQRTFAHS
   2  (  169)    VATQFLPTPQLLTQQVPLSKGTGAPSAAGSAAAPCLERAGQKLEPLAYCVPVIQRT--QP

//
                                                                             
   0  (  231)    SGEQSG-SDTDTDSGYGGESE------KGD--------LRSEQPCFKSDHGRRFTMGERI
   1  (  231)    SGEQSG-SDTDTDSGYGGESE------KGD--------LRSEQPCFKSDHGRRFTMGERI
   2  (  227)    SAELAAENDTDTDSGYGGEAEARPDREKGKGAGASRVTIKQEPPGEDSPAPKRMKLDSRG

//
                                                                             
   0  (  276)    G----------AIKQESEEPPTKKNRMQLSDDEGHFTSSDLIS------SPFLGPHPHQP
   1  (  276)    G----------AIKQESEEPPTKKNRMQLSDDEGHFTSSDLIS------SPFLGPHPHQP
   2  (  287)    GGSGGGPGGGAAAAAAALLGPDPAAAAALLRPDAALLSS-LVAFGGGGGAPFPQPAAAAA

//
                                                                             
   0  (  320)    PFCLPF-YLIPPSATAYL-PML-----EKCWYPTSV----PVLYPGLNASAAALSSFMNP
   1  (  320)    PFCLPF-YLIPPSATAYL-PML-----EKCWYPTSV----PVLYPGLNASAAALSSFMNP
   2  (  346)    PFCLPFCFLSPSAAAAYVQPFLDKSGLEKYLYPAAAAAPFPLLYPGIPAPAAAAAAAAAA

//
                                                             
   0  (  369)    DKISAPLLMPQRLPSPLPAHPSVDSSVLLQALKPIPPLNLETKD
   1  (  369)    DKISAPLLMPQRLPSPLPAHPSVDSSVLLQALKPIPPLNLETKD
   2  (  406)    AAAAAAFPCLSSVLSPPPEKAGAAAATLL...............

//