Multiple alignment for pF1KSDA0334
Check alignment(s).
#  0    Query: pF1KSDA0334, 846 aa
#  1    CCDS3500.1 CLOCK gene_id:9575|Hs108|chr4    (846 aa)
#  2    CCDS2048.1 NPAS2 gene_id:4862|Hs108|chr2    (824 aa)

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        exp       sw-scr    id%      from      to
   1    7e-204      5563  100.0         1     846
   2    3.9e-91     2568   50.9         1     820

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   0  (    1)    MLFTVSCSKMSSIVDRDDSSIFDGLVEEDDKDKAKRVSRNKSEKKRRDQFNVLIKELGSM
   1  (    1)    MLFTVSCSKMSSIVDRDDSSIFDGLVEEDDKDKAKRVSRNKSEKKRRDQFNVLIKELGSM
   2  (    1)    .........................MDEDEKDRAKRASRNKSEKKRRDQFNVLIKELSSM

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   0  (   61)    LPGNARKMDKSTVLQKSIDFLRKHKEITAQSDASEIRQDWKPTFLSNEEFTQLMLEALDG
   1  (   61)    LPGNARKMDKSTVLQKSIDFLRKHKEITAQSDASEIRQDWKPTFLSNEEFTQLMLEALDG
   2  (   36)    LPGNTRKMDKTTVLEKVIGFLQKHNEVSAQTEICDIQQDWKPSFLSNEEFTQLMLEALDG

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   0  (  121)    FFLAIMTDGSIIYVSESVTSLLEHLPSDLVDQSIFNFIPEGEHSEVYKILSTHLLESDSL
   1  (  121)    FFLAIMTDGSIIYVSESVTSLLEHLPSDLVDQSIFNFIPEGEHSEVYKILSTHLLESDSL
   2  (   96)    FIIAVTTDGSIIYVSDSITPLLGHLPSDVMDQNLLNFLPEQEHSEVYKILSSHMLVTDSP

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   0  (  181)    TPEYLKSKNQLEFCCHMLRGTIDPKEPSTYEYVKFIGNFKSLNSVSSSAHNGFEGTIQRT
   1  (  181)    TPEYLKSKNQLEFCCHMLRGTIDPKEPSTYEYVKFIGNFKSLNSVSSSAHNGFEGTIQRT
   2  (  156)    SPEYLKSDSDLEFYCHLLRGSLNPKEFPTYEYIKFVGNFRSYNNVPSPSCNGFDNTLSRP

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   0  (  241)    HRPSYEDRVCFVATVRLATPQFIKEMCTVEEPNEEFTSRHSLEWKFLFLDHRAPPIIGYL
   1  (  241)    HRPSYEDRVCFVATVRLATPQFIKEMCTVEEPNEEFTSRHSLEWKFLFLDHRAPPIIGYL
   2  (  216)    CRVPLGKEVCFIATVRLATPQFLKEMCIVDEPLEEFTSRHSLEWKFLFLDHRAPPIIGYL

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   0  (  301)    PFEVLGTSGYDYYHVDDLENLAKCHEHLMQYGKGKSCYYRFLTKGQQWIWLQTHYYITYH
   1  (  301)    PFEVLGTSGYDYYHVDDLENLAKCHEHLMQYGKGKSCYYRFLTKGQQWIWLQTHYYITYH
   2  (  276)    PFEVLGTSGYDYYHIDDLELLARCHQHLMQFGKGKSCCYRFLTKGQQWIWLQTHYYITYH

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   0  (  361)    QWNSRPEFIVCTHTVVSYAEVRAERRRELGIEESLPETAADKS--QDSGS--DNRINTVS
   1  (  361)    QWNSRPEFIVCTHTVVSYAEVRAERRRELGIEESLPETAADKS--QDSGS--DNRINTVS
   2  (  336)    QWNSKPEFIVCTHSVVSYADVRVERRQELALEDP-PSEALHSSALKDKGSSLEPRQHFNT

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   0  (  417)    LKEALERFDHSPTPSASSRSSRKSSHTAVSDPSSTPTKIPTDTSTP--PRQHLPAHEKMV
   1  (  417)    LKEALERFDHSPTPSASSRSSRKSSHTAVSDPSSTPTKIPTDTSTP--PRQHLPAHEKMV
   2  (  395)    LDVGASGLNTSHSPSASSRSSHKSSHTAMSEPTSTPTKLMAEASTPALPRSATLPQELPV

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   0  (  475)    QRRSSFSSQSINSQSVGS-SLTQPVMSQATNLPIPQGMSQFQFSAQLGAMQHLKDQLEQR
   1  (  475)    QRRSSFSSQSINSQSVGS-SLTQPVMSQATNLPIPQGMSQFQFSAQLGAMQHLKDQLEQR
   2  (  455)    PGLSQAATMPAPLPSPSSCDLTQQLLPQTVLQSTPAPMAQF--SAQFSMFQTIKDQLEQR

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   0  (  534)    TRMIEANIHRQQEELRKIQEQLQMVHGQGLQMFLQQSNPGLNFGSVQLSSGNSSNIQQLA
   1  (  534)    TRMIEANIHRQQEELRKIQEQLQMVHGQGLQMFLQQSNPGLNFGSVQLSSGNSSNIQQLA
   2  (  513)    TRILQANIRWQQEELHKIQEQLCLVQDSNVQMFLQQPAVSLSFSSTQRPEAQQQ-LQQRS

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   0  (  594)    PINMQGQVVPTNQIQSGMNTGHIGTTQHMIQQQTLQSTSTQSQQNVLSGHSQQTSLPSQT
   1  (  594)    PINMQGQVVPTNQIQSGMNTGHIGTTQHMIQQQTLQSTSTQSQQNVLSGHSQQTSLPSQT
   2  (  572)    AAVTQPQLGAGPQLPGQISSAQV-TSQHLLRESSV--ISTQGPKPMRSSQLMQSS--GRS

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   0  (  654)    QSTLTAPLYNTMVISQPAAGSMVQIPSSMPQNSTQSAAVTTFTQDRQIRFSQGQQLVTKL
   1  (  654)    QSTLTAPLYNTMVISQPAAGSMVQIPSSMPQNSTQSAAVTTFTQDRQIRFSQGQQLVTKL
   2  (  627)    GSSLVSP-FSSATAALPPSLNLTT-PASTSQDASQCQPSPDFSHDRQLRLLLSQPIQPMM

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   0  (  714)    VTAPVACGAVMVPSTM---------LMGQVVTAYPTFATQQQQSQTLSVTQQQQQ--QSS
   1  (  714)    VTAPVACGAVMVPSTM---------LMGQVVTAYPTFATQQQQSQTLSVTQQQQQ--QSS
   2  (  685)    ---PGSCDARQ-PSEVSRTGRQVKYAQSQTVFQNPDAHPANSSSAPMPVLLMGQAVLHPS

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   0  (  763)    QEQQLTSVQQPSQAQLTQPPQQFLQTS--RLLHGNPSTQLILSAAFPLQQSTFPQSHHQQ
   1  (  763)    QEQQLTSVQQPSQAQLTQPPQQFLQTS--RLLHGNPSTQLILSAAFPLQQSTFPQSHHQQ
   2  (  741)    FPASQPSPLQPAQAR-QQPPQHYLQVQAPTSLHSEQQDSLLLST-YSQQPGTL--GYPQP

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   0  (  821)    HQSQQQQQLSRHRTDSLPDPSKVQPQ
   1  (  821)    HQSQQQQQLSRHRTDSLPDPSKVQPQ
   2  (  797)    PPAQPQPLRPPRRVSSLSESSGLQ..

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