# 0 Query: pF1KE2329, 1313 aa
# 1 CCDS31902.1 ATXN2 gene_id:6311|Hs108|chr12 (1313 aa)
# 2 CCDS81739.1 ATXN2 gene_id:6311|Hs108|chr12 (1073 aa)
# 3 CCDS81738.1 ATXN2 gene_id:6311|Hs108|chr12 (1006 aa)
# 4 CCDS76850.1 ATXN2L gene_id:11273|Hs108|chr16 (1068 aa)
# 5 CCDS10640.1 ATXN2L gene_id:11273|Hs108|chr16 (1097 aa)
//
exp sw-scr id% from to
1 5.9e-204 9035 100.0 1 1313
2 9.3e-151 7123 97.7 1 1073
3 8.5e-124 6784 95.9 1 1006
4 6.1e-29 2262 39.5 2 1033
5 1.2e-27 2249 39.5 2 1027
//
0 ( 1) MRSAAAAPRSPAVATESRRFAAARWPGWRSLQRPARRSGRGGGGAAPGPYPSAAPPPPGP
1 ( 1) MRSAAAAPRSPAVATESRRFAAARWPGWRSLQRPARRSGRGGGGAAPGPYPSAAPPPPGP
2 ( -) ............................................................
3 ( -) ............................................................
4 ( -) ............................................................
5 ( -) ............................................................
//
0 ( 61) GPPPSRQSSPPSASDCFGSNGNGGGAFRPGSRRLLGLGGPPRPFVVLLLPLASPGAPPAA
1 ( 61) GPPPSRQSSPPSASDCFGSNGNGGGAFRPGSRRLLGLGGPPRPFVVLLLPLASPGAPPAA
2 ( -) ............................................................
3 ( -) ............................................................
4 ( -) ............................................................
5 ( -) ............................................................
//
0 ( 121) PTRASPLGARASPPRSGVSLARPAPGCPRPACEPVYGPLTMSLKPQQQQQQQQQQQQQQQ
1 ( 121) PTRASPLGARASPPRSGVSLARPAPGCPRPACEPVYGPLTMSLKPQQQQQQQQQQQQQQQ
2 ( -) ............................................................
3 ( -) ............................................................
4 ( 2) ..........................................LKPQPLQQPSQPQQPPPT
5 ( 2) ..........................................LKPQPLQQPSQPQQPPPT
//
0 ( 181) QQQQQQQQPPPAAANVRKPGGSGLLASPAAAPSP--SSSSVSSSSATAPSSVVAATSG--
1 ( 181) QQQQQQQQPPPAAANVRKPGGSGLLASPAAAPSP--SSSSVSSSSATAPSSVVAATSG--
2 ( -) ............................................................
3 ( -) ............................................................
4 ( 20) QQAVARR--PPGGTSPPNGGLPGPLATSAAPPGPPAAASPCLGPVAAAGSGLRRGAEGIL
5 ( 20) QQAVARR--PPGGTSPPNGGLPGPLATSAAPPGPPAAASPCLGPVAAAGSGLRRGAEGIL
//
0 ( 237) ----------GGRPG---LG--RGRNSNKGLPQSTISFDGIYANMRMVHILTSVVGSKCE
1 ( 237) ----------GGRPG---LG--RGRNSNKGLPQSTISFDGIYANMRMVHILTSVVGSKCE
2 ( 1) ............................................MRMVHILTSVVGSKCE
3 ( 1) ............................................MRMVHILTSVV-----
4 ( 78) APQPPPPQQHQERPGAAAIGSARGQSTGKGPPQSPV-FEGVYNNSRMLHFLTAVVGSTCD
5 ( 78) APQPPPPQQHQERPGAAAIGSARGQSTGKGPPQSPV-FEGVYNNSRMLHFLTAVVGSTCD
//
0 ( 282) VQVKNGGIYEGVFKTYSPKCDLVLDAAHEKSTESSSGPKREEIMESILFKCSDFVVVQFK
1 ( 282) VQVKNGGIYEGVFKTYSPKCDLVLDAAHEKSTESSSGPKREEIMESILFKCSDFVVVQFK
2 ( 17) VQVKNGGIYEGVFKTYSPKCDLVLDAAHEKSTESSSGPKREEIMESILFKCSDFVVVQFK
3 ( 12) -------------------CDLVLDAAHEKSTESSSGPKREEIMESILFKCSDFVVVQFK
4 ( 137) VKVKNGTTYEGIFKTLSSKFELAVDAVHRKASEPAGGPRREDIVDTMVFKPSDVMLVHFR
5 ( 137) VKVKNGTTYEGIFKTLSSKFELAVDAVHRKASEPAGGPRREDIVDTMVFKPSDVMLVHFR
//
0 ( 342) DMDSSYAKRDAFTDSAIS--AKVNGEHKEKDLEPWDAGELTANEELEALENDVSNGWDPN
1 ( 342) DMDSSYAKRDAFTDSAIS--AKVNGEHKEKDLEPWDAGELTANEELEALENDVSNGWDPN
2 ( 77) DMDSSYAKRDAFTDSAIS--AKVNGEHKEKDLEPWDAGELTANEELEALENDVSNGWDPN
3 ( 53) DMDSSYAKRDAFTDSAIS--AKVNGEHKEKDLEPWDAGELTANEELEALENDVSNGWDPN
4 ( 197) NVDFNYATKDKFTDSAIAMNSKVNGEHKEKVLQRWEGGD--SNSDDYDLESDMSNGWDPN
5 ( 197) NVDFNYATKDKFTDSAIAMNSKVNGEHKEKVLQRWEGGD--SNSDDYDLESDMSNGWDPN
//
0 ( 400) DMFRYNEENYGVVSTYDSSLSSYTVPLERDNSEEFLKREARANQLAEEIESSAQYKARVA
1 ( 400) DMFRYNEENYGVVSTYDSSLSSYTVPLERDNSEEFLKREARANQLAEEIESSAQYKARVA
2 ( 135) DMFRYNEENYGVVSTYDSSLSSYTVPLERDNSEEFLKREARANQLAEEIESSAQYKARVA
3 ( 111) DMFRYNEENYGVVSTYDSSLSSYTVPLERDNSEEFLKREARANQLAEEIESSAQYKARVA
4 ( 255) EMFKFNEENYGVKTTYDSSLSSYTVPLEKDNSEEFRQRELRAAQLAREIESSPQYRLRIA
5 ( 255) EMFKFNEENYGVKTTYDSSLSSYTVPLEKDNSEEFRQRELRAAQLAREIESSPQYRLRIA
//
0 ( 460) LENDD-RSEEEKYTAVQRNSSEREGHSINTRENKYIPPGQRNREVISWGSGRQNSPRMGQ
1 ( 460) LENDD-RSEEEKYTAVQRNSSEREGHSINTRENKYIPPGQRNREVISWGSGRQNSPRMGQ
2 ( 195) LENDD-RSEEEKYTAVQRNSSEREGHSINTRENKYIPPGQRNREVISWGSGRQNSPRMGQ
3 ( 171) LENDD-RSEEEKYTAVQRNSSEREGHSINTRENKYIPPGQRNREVISWGSGRQNSPRMGQ
4 ( 315) MENDDGRTEEEKHSAVQRQGSGRESPSLASREGKYIPLPQRVREG-PRGGVRCSSSRGGR
5 ( 315) MENDDGRTEEEKHSAVQRQGSGRESPSLASREGKYIPLPQRVREG-PRGGVRCSSSRGGR
//
0 ( 519) PGSGSMPSRSTSHTSDFNPNSGSDQRVVNGGVPWPSPCPSPSSRPPSRYQSGPNSLPPRA
1 ( 519) PGSGSMPSRSTSHTSDFNPNSGSDQRVVNGGVPWPSPCPSPSSRPPSRYQSGPNSLPPRA
2 ( 254) PGSGSMPSRSTSHTSDFNPNSGSDQRVVNGGVPWPSPCPSPSSRPPSRYQSGPNSLPPRA
3 ( 230) PGSGSMPSRSTSHTSDFNPNSGSDQRVVNGGVPWPSPCPSPSSRPPSRYQSGPNSLPPRA
4 ( 374) PGLSSLPPRGPHHLDNSSPGPGSEARGINGG---PSRM-SPKAQRPLR---GAKTL----
5 ( 374) PGLSSLPPRGPHHLDNSSPGPGSEARGINGG---PSRM-SPKAQRPLR---GAKTL----
//
0 ( 579) ATPTRPPSRPPSRPSRPPSHPSAHGSPAPVSTMPKRMSSEGPPRMSPKAQRHPRNHRVSA
1 ( 579) ATPTRPPSRPPSRPSRPPSHPSAHGSPAPVSTMPKRMSSEGPPRMSPKAQRHPRNHRVSA
2 ( 314) ATPTRPPSRPPSRPSRPPSHPSAHGSPAPVSTMPKRMSSEGPPRMSPKAQRHPRNHRVSA
3 ( 290) ATPTRPPSRPPSRPSRPPSHPSAHGSPAPVSTMPKRMSSEGPPRMSPKAQRHPRNHRVSA
4 ( 423) ---SSPSNRPSGETSVPP--PPAAPPFLPVGRMY-------PPR-SPK----------SA
5 ( 423) ---SSPSNRPSGETSVPP--PPAVG----------RMY---PPR-SPK----------SA
//
0 ( 639) GRGSISSGLEFVSHNPPSEAATPPVARTSPSGGTWSSVVSGVPRLSPKTHRPRSPRQNSI
1 ( 639) GRGSISSGLEFVSHNPPSEAATPPVARTSPSGGTWSSVVSGVPRLSPKTHRPRSPRQNSI
2 ( 374) GRGSISSGLEFVSHNPPSEAATPPVARTSPSGGTWSSVVSGVPRLSPKTHRPRSPRQNSI
3 ( 350) GRGSISSGLEFVSHNPPSEAATPPVARTSPSGGTWSSVVSGVPRLSPKTHRPRSPRQNSI
4 ( 460) APAPISAS----CPEPPIGSAVPTSSASIPVTSSVSD--PGVGSISP-------------
5 ( 454) APAPISAS----CPEPPIGSAVPTSSASIPVTSSVSD--PGVGSISP-------------
//
0 ( 699) GNTPSGPVLASPQAGIIPTEAVAMPIPAASPTPASPASNRAVTPSSEAKDSRLQDQRQNS
1 ( 699) GNTPSGPVLASPQAGIIPTEAVAMPIPAASPTPASPASNRAVTPSSEAKDSRLQDQRQNS
2 ( 434) GNTPSGPVLASPQAGIIPTEAVAMPIPAASPTPASPASNRAVTPSSEAKDSRLQDQRQNS
3 ( 410) GNTPSGPVLASPQAGIIPTEAVAMPIPAASPTPASPASNRAVTPSSEAKDSRLQDQRQNS
4 ( 501) ---------ASPKISLAPTDVKEL----STKEPG-----RTLEPQELAR-----------
5 ( 495) ---------ASPKISLAPTDVKEL----STKEPG-----RTLEPQELAR-----------
//
0 ( 759) PAGNKENIKPNETSPSFSKAENKGISPVVSEHRKQIDDLKKFKNDFRLQPSSTSE-SMDQ
1 ( 759) PAGNKENIKPNETSPSFSKAENKGISPVVSEHRKQIDDLKKFKNDFRLQPSSTSE-SMDQ
2 ( 494) PAGNKENIKPNETSPSFSKAENKGISPVVSEHRKQIDDLKKFKNDFRLQPSSTSE-SMDQ
3 ( 470) PAGNKENIKPNETSPSFSKAENKGISPVVSEHRKQIDDLKKFKNDFRLQPSSTSE-SMDQ
4 ( 532) IAGKVPGLQ-NE------------------QKRFQLEELRKFGAQFKLQPSSSPENSLDP
5 ( 526) IAGKVPGLQ-NE------------------QKRFQLEELRKFGAQFKLQPSSSPENSLDP
//
0 ( 818) LLNKN-REGEKSRDLIKDKIEPSAKDSFIENSSSNCTSGSSKPNSPSISPSILSNTEHKR
1 ( 818) LLNKN-REGEKSRDLIKDKIEPSAKDSFIENSSSNCTSGSSKPNSPSISPSILSNTEHKR
2 ( 553) LLNKN-REGEKSRDLIKDKIEPSAKDSFIENSSSNCTSGSSKPNSPSISPSILSNTEHKR
3 ( 529) LLNKN-REGEKSRDLIKDKIEPSAKDSFIENSSSNCTSGSSKPNSPSISPSILSNTEHKR
4 ( 573) FPPRILKEEPKGKEKEVDGLLTS--EPMGSPVSSKTESVSDKEDKPPLAPSGGTEGPEQP
5 ( 567) FPPRILKEEPKGKEKEVDGLLTS--EPMGSPVSSKTESVSDKEDKPPLAPSGGTEGPEQP
//
0 ( 877) GPEVTSQGVQTSSPACKQEKDDKEEKKDAAEQVRKSTLNPNAKEFNPRS--FSQPKPSTT
1 ( 877) GPEVTSQGVQTSSPACKQEKDDKEEKKDAAEQVRKSTLNPNAKEFNPRS--FSQPKPSTT
2 ( 612) GPEVTSQGVQTSSPACKQEKDDKEEKKDAAEQVRKSTLNPNAKEFNPRS--FSQPKPSTT
3 ( 588) GPEVTSQGVQTSSPACKQEKDDKEEKKDAAEQVRKSTLNPNAKEFNPRS--FSQPKPSTT
4 ( 631) PPPCPSQ---TGSPPVGLIKGEDKDEGPVAEQVKKSTLNPNAKEFNPTKPLLSVNKSTST
5 ( 625) PPPCPSQ---TGSPPVGLIKGEDKDEGPVAEQVKKSTLNPNAKEFNPTKPLLSVNKSTST
//
0 ( 935) PTSPRPQAQPSPSMVGHQQPTPVYTQPVCFAPNMMYPVP---VSPGVQ-P-LYPIPMT-P
1 ( 935) PTSPRPQAQPSPSMVGHQQPTPVYTQPVCFAPNMMYPVP---VSPGVQ-P-LYPIPMT-P
2 ( 670) PTSPRPQAQPSPSMVGHQQPTPVYTQPVCFAPNMMYPVP---VSPGVQ-P-LYPIPMT-P
3 ( 646) PTSPRPQAQPSPSMVGHQQPTPVYTQPVCFAPNMMYPVP---VSPGVQ-P-LYPIPMT-P
4 ( 688) PTSPGPRTHSTPSI-----PVLTAGQSGLYSPQYISYIPQIHMGPAVQAPQMYPYPVSNS
5 ( 682) PTSPGPRTHSTPSI-----PVLTAGQSGLYSPQYISYIPQIHMGPAVQAPQMYPYPVSNS
//
0 ( 989) MPVNQAKTYRAVPNMPQQRQDQHHQSA---MMHPASAAGPPIAATPPAYSTQYVAYSPQQ
1 ( 989) MPVNQAKTYRAVPNMPQQRQDQHHQSA---MMHPASAAGPPIAATPPAYSTQYVAYSPQQ
2 ( 724) MPVNQAKTYRAVPNMPQQRQDQHHQSA---MMHPASAAGPPIAATPPAYSTQYVAYSPQQ
3 ( 700) MPVNQAKTYRAVPNMPQQRQDQHHQSA---MMHPASAAGPPIAATPPAYSTQYVAYSPQQ
4 ( 743) VPGQQGKYRGAKGSLPPQRSDQHQPASAPPMMQAAAAAGPPLVAATP-YSS-YIPYNPQQ
5 ( 737) VPGQQGKYRGAKGSLPPQRSDQHQPASAPPMMQAAAAAGPPLVAATP-YSS-YIPYNPQQ
//
0 ( 1046) FPNQP-LVQHVPHYQSQHPHVYSPVIQGNARMMAPPTHAQPGLVSSSATQYGAHEQTHAM
1 ( 1046) FPNQP-LVQHVPHYQSQHPHVYSPVIQGNARMMAPPTHAQPGLVSSSATQYGAHEQTHAM
2 ( 781) FPNQP-LVQHVPHYQSQHPHVYSPVIQGNARMMAPPTHAQPGLVSSSATQYGAHEQTHAM
3 ( 757) FPNQP-LVQHVPHYQSQHPHVYSPVIQGNARMMAPPTHAQPGLVSSSATQYGAHEQTHAM
4 ( 801) FPGQPAMMQPMAHYPSQ-P-VFAPMLQSNPRMLTSGSHPQ-AIVSSSTPQYPSAEQ----
5 ( 795) FPGQPAMMQPMAHYPSQ-P-VFAPMLQSNPRMLTSGSHPQ-AIVSSSTPQYPSAEQ----
//
0 ( 1105) YACPKLPYNKETSPSFYFAISTGSLAQQYAHPNATLHPHTPHPQPSATPTGQQ-QSQHGG
1 ( 1105) YACPKLPYNKETSPSFYFAISTGSLAQQYAHPNATLHPHTPHPQPSATPTGQQ-QSQHGG
2 ( 840) YACPKLPYNKETSPSFYFAISTGSLAQQYAHPNATLHPHTPHPQPSATPTGQQ-QSQHGG
3 ( 816) Y------------------VSTGSLAQQYAHPNATLHPHTPHPQPSATPTGQQ-QSQHGG
4 ( 854) ---P--------TPQALYA----TVHQSYPHHATQLHAH--QPQPATTPTGSQPQSQHA-
5 ( 848) ---P--------TPQALYA----TVHQSYPHHATQLHAH--QPQPATTPTGSQPQSQHA-
//
0 ( 1164) SHPAPSPVQHHQHQAAQALHLASPQQQSAIYHAG-LAPTPPSMTPASNTQSPQNSFPAAQ
1 ( 1164) SHPAPSPVQHHQHQAAQALHLASPQQQSAIYHAG-LAPTPPSMTPASNTQSPQNSFPAAQ
2 ( 899) SHPAPSPVQHHQHQAAQALHLASPQQQSAIYHAG-LAPTPPSMTPASNTQSPQNSFPAAQ
3 ( 857) SHPAPSPVQHHQHQAAQALHLASPQQQSAIYHAG-LAPTPPSMTPASNTQSPQNSFPAAQ
4 ( 896) ---APSPVQH---QAGQAPHLGSGQPQQNLYHPGALTGTPPSLPPGPSAQSPQSSFPQPA
5 ( 890) ---APSPVQH---QAGQAPHLGSGQPQQNLYHPGALTGTPPSLPPGPSAQSPQSSFPQPA
//
0 ( 1223) QTVFTIHPSHVQPAYTNPPHMAHVPQ-------------------------AHVQSGMV-
1 ( 1223) QTVFTIHPSHVQPAYTNPPHMAHVPQ-------------------------AHVQSGMV-
2 ( 958) QTVFTIHPSHVQPAYTNPPHMAHVPQCASEALARCGLEMRLSWIYLSEGYLAHVQSGMV-
3 ( 916) QTVFTIHPSHVQPAYTNPPHMAHVPQ-------------------------AHVQSGMV-
4 ( 950) -AVYAIHHQQLPHGFTN---MAHVTQ-------------------------AHVQTGITA
5 ( 944) -AVYAIHHQQLPHGFTN---MAHVTQ-------------------------AHVQTGITA
//
0 ( 1257) --PSHPTAHAPMMLMTTQPP---GGP-QAALAQSALQPIPVSTTAHFPYMTHPSVQAHHQ
1 ( 1257) --PSHPTAHAPMMLMTTQPP---GGP-QAALAQSALQPIPVSTTAHFPYMTHPSVQAHHQ
2 ( 1017) --PSHPTAHAPMMLMTTQPP---GGP-QAALAQSALQPIPVSTTAHFPYMTHPSVQAHHQ
3 ( 950) --PSHPTAHAPMMLMTTQPP---GGP-QAALAQSALQPIPVSTTAHFPYMTHPSVQAHHQ
4 ( 981) APPPHPGAPHPPQVMLLHPPQSHGGPPQGAVPQSGVPALSASTPSPYPYIGHP.......
5 ( 975) APPPHPGAPHPPQVMLLHPPQSHGGPPQGAVPQSGVPALSASTPSPYPYIGHP.......
//
0 ( 1311) QQL
1 ( 1311) QQL
2 ( 1071) QQL
3 ( 1004) QQL
4 ( -) ...
5 ( -) ...
//
