HUGE

Gene/Protein Characteristic Table for KIAA0481

Link to : Rouge \| GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Mapping

Product ID :	ORK00088
Accession No. :	AB007950
Description :	Transmembrane and coiled-coil domains protein 2.
HUGO Gene Name :
Clone Name :	hm00132 [Vector Info]
Flexi ORF Clone :	pF1KA0481
Source :	Human adult brain
Note :	We replaced hh01480 and hh01480s1, former representative clones for KIAA0481 with hm00132. (2002/5/10,2005/08/06)

Features of the cloned DNA sequence	Description

Length: 3998 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
NO

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 1213 bp

Genome contig ID gi89161185f_203363661
PolyA signal sequence
(AATAAA,-22)
+----*----+----*----+----*----+----
CACCTTCCTGAGAAATAAATATCCTCTAAATTTTC
Flanking genome sequence
(145429 - 145478)
----+----*----+----*----+----*----+----*----+----*
AAACCATCCTGTCTGGTGTTGGTTGATTAGGTTGTGTCTGTGGGAACCAC

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class

ContigView(URL based/DAS) 1 f 203463661 203509088 5 99.6 Perfect prediction

Features of the protein sequence	Description

Length: 732 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	Exp	ID%	Protein	Source
O75069	0	100.0	Transmembrane a...	Homo sapiens
XP_001160985	0	99.4	hypothetical pr...	Pan troglodytes
XP_001094601	0	99.0	similar to tran...	Macaca mulatta
XP_545686	5.6e-212	94.5	similar to tran...	Canis lupus fam...
Q80W04	1.1e-209	94.2	Transmembrane a...	Mus musculus

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output, Multiple alignment)

Entry	Exp	ID%	HUGE_ID
AB032971	8.2e-51	55.7	KIAA1145
AB018322	4.7e-40	64.0	KIAA0779

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

Motif_DB interpro_ID From To Entry Definition

None - - - - -

Motif_DB	interpro_ID	From	To	Entry	Definition
None	-	-	-	-	-

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

SOSUI2 1 667 GKFINVILALMAVLLVFVSTIAN 689 PRIMARY 23

2 705 TLLVLVLFLLWKHWDSLTYLLEH 727 SECONDARY 23

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	667	GKFINVILALMAVLLVFVSTIAN	689	PRIMARY	23
2	705	TLLVLVLFLLWKHWDSLTYLLEH	727	SECONDARY	23

RH mapping information	Description

Chromosome No.

: 1

Experimental conditions

Panel name	: GeneBridge 4
Primer_f	: CTCAGGAAGGTGCACAACAGC
Primer_r	: GCTCTGGAGTGTTGTGTATGG
PCR product length	: 146 bp
PCR conditions	: 95 °C15 sec66 °C60 sec30 cycles

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	NO
Warning for coding interruption:	NO

Length of 3'UTR	1213 bp
Genome contig ID	gi89161185f_203363661
PolyA signal sequence (AATAAA,-22)	+--------+--------+----*----+---- CACCTTCCTGAGAAATAAATATCCTCTAAATTTTC
Flanking genome sequence (145429 - 145478)	----+--------+--------+--------+--------+----* AAACCATCCTGTCTGGTGTTGGTTGATTAGGTTGTGTCTGTGGGAACCAC

	Chr	f/r	start	end	exon	identity	class
ContigView(URL based/DAS)	1	f	203463661	203509088	5	99.6	Perfect prediction

Gene/Protein Characteristic Table for KIAA0481

Features of the cloned DNA sequence

Features of the protein sequence

RH mapping information