Gene/Protein Characteristic Table for KIAA0679
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Product ID ORK01602
Accession No AB014579
Description meningioma expressed antigen 5 (hyaluronidase), transcript variant 1
Clone name hk02739s1
Vector information
The cDNA fragment was inserted at the SalI-NotI site of the ...
cDNA sequence DNA sequence (4755 bp)
Predicted protein sequence (917 aa)
Flexi ORF Clone FXC01602
Source Human adult brain
Rouge ID mKIAA0679 by Kazusa Mouse cDNA Project
Note We replaced hk02739, former representative clones for KIAA0679 with hk02739s1. (2002/5/10)
Features of the cloned cDNA sequence
Description

Length: 4755 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).

N-terminal truncation Coding interruption
cloned DNA seq Warning No warning
Integrity of 3' end
Length of 3'UTR 1999 bp
Genome contig ID gi89161187r_103434199
PolyA signal sequence
(AATAAA,-16)
+----*----+----*----+----*----+----
AAGACCATGCAAGAGGCAAAATAAAACTTGAAGTG
Flanking genome sequence
(100000 - 99951)
----+----*----+----*----+----*----+----*----+----*
AATGCTTGTCGTGTTGTATTGTGTGAATCTATTTCCTGTCTGCCCCCTCC

Ensembl ContigView (Add our DAS server as a DAS source)


Chr f/r start end exon identity class
Ensembl gnome browser 10 r 103534199 103567774 16 99.5 Perfect prediction
Features of the protein sequence
Description

Length: 917 aa
Result of homology search against nr database (FASTA output, Multiple alignment)
Entry Exp ID% Protein Source
O60502 0 100.0 Bifunctional pr...
Homo sapiens
XP_534996 0 99.2 similar to meni...
Canis lupus fam...
XP_001499585 0 99.2 meningioma expr...
Equus caballus
XP_001927682 0 98.9 meningioma expr...
Sus scrofa
Q8VIJ5 0 97.4 Bifunctional pr...
Rattus norvegicus
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of homology search against HUGE database (FASTA output, Multiple alignment)
No significant homologues
Result of motif / domain search (InterProScan and SOSUI)

Result of InterProScan

Search method interpro_ID From To Entry Definition
HMMPfam IPR011496 63 380 PF07555 Hyaluronidase eukaryotic/prokaryotic
Expression profile
Description

RT-PCR
Experimental conditions
Primer_f CATGAAGCTGGCAGATAGTCG
Primer_r ACAATGCTTTAGGGCTCTCTC
PCR conditions 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RH mapping information
Description

Chromosome No. 10
Experimental conditions
Panel name GeneBridge 4
Primer_f CATGAAGCTGGCAGATAGTCG
Primer_r ACAATGCTTTAGGGCTCTCTC
PCR product length 221 bp
PCR conditions 95 °C15 sec64 °C60 sec30 cycles
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