Gene/Protein Characteristic Table for KIAA0047
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Product ID ORK04560
Accession No D38554
Description charged multivesicular body protein 1A
Clone name ha01551
Vector information
The cDNA fragment was inserted at the EcoRV-NotI site of the ...
cDNA sequence DNA sequence (2284 bp)
Predicted protein sequence (268 aa)
Source Myeloblast cell line (KG-1)
Features of the cloned cDNA sequence

Length: 2284 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).

N-terminal truncation Coding interruption
cloned DNA seq Warning Warning
Integrity of 3' end
Length of 3'UTR 1476 bp
Genome contig ID gi51511732r_88138347
PolyA signal sequence
Flanking genome sequence
(100000 - 99951)

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class
Ensembl gnome browser 16 r 88238347 88251562 7 99.3 Perfect prediction
Features of the protein sequence

Length: 268 aa
Result of homology search against nr database (FASTA output, Multiple alignment)
Entry Exp ID% Protein Source
EAW66715 5.3e-100 99.6 procollagen (ty...
Homo sapiens
AAC50775 3e-99 98.9 PRSM1.
Homo sapiens
NP_001076783 6.2e-87 98.8 chromatin modif...
Homo sapiens
EAW66716 4.7e-40 99.2 procollagen (ty...
Homo sapiens
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of homology search against HUGE database (FASTA output, Multiple alignment)
No significant homologues
Result of motif / domain search (InterProScan and SOSUI)

Result of InterProScan

Search method interpro_ID From To Entry Definition
ScanRegExp IPR006025 151 160 PS00142 Peptidase M
Expression profile

Northern blot
Experimental conditions
PCR conditions test

RH mapping information

Chromosome No. 16
Experimental conditions
Panel name Genebridge 4
PCR product length 178 bp
PCR conditions 95 °C15 sec66 °C60 sec30 cycles
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