Gene/Protein Characteristic Table for KIAA0068
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Product ID ORK01053
Accession No D38549
Description cytoplasmic FMR1 interacting protein 1, transcript variant 1
Clone name ha01025
Vector information
The cDNA fragment was inserted at the EcoRV-NotI site of the ...
cDNA sequence DNA sequence (4379 bp)
Predicted protein sequence (1271 aa)
Flexi ORF Clone FXC01053
Source Myeloblast cell line (KG-1)
Rouge ID mKIAA0068 by Kazusa Mouse cDNA Project
Features of the cloned cDNA sequence
Description

Length: 4379 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).

N-terminal truncation Coding interruption
cloned DNA seq Warning No warning
Integrity of 3' end
Length of 3'UTR 562 bp
Genome contig ID gi51511731f_20344174
PolyA signal sequence
(AATAAA,-19)
+----*----+----*----+----*----+----
ATCGAAAGGTTATAGAAATAAAACTAATGAGATCT
Flanking genome sequence
(210871 - 210920)
----+----*----+----*----+----*----+----*----+----*
ATTTGTGTTCATTTATTTACTCTAACCCTGTGCTGCCTGGCTTGGCAAGG

Ensembl ContigView (Add our DAS server as a DAS source)


Chr f/r start end exon identity class
Ensembl gnome browser 15 f 20444174 20555043 31 99.8 Perfect prediction
Features of the protein sequence
Description

Length: 1271 aa
Result of homology search against nr database (FASTA output, Multiple alignment)
Entry Exp ID% Protein Source
Q7L576 0 100.0 Cytoplasmic FMR...
Homo sapiens
EDL86460 0 99.2 cytoplasmic FMR...
Rattus norvegicus
Q7TMB8 0 99.0 Cytoplasmic FMR...
Mus musculus
AAH47135 0 99.0 Cytoplasmic FMR...
Mus musculus
XP_001790637 0 99.0 similar to cyto...
Bos taurus
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of homology search against HUGE database (FASTA output, Multiple alignment)
Entry Exp ID% HUGE_ID
AB032994 0 85.0 KIAA1168
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)

Result of InterProScan

Search method interpro_ID From To Entry Definition
FPrintScan IPR008081 62 79 PR01698 Cytoplasmic fragile X mental retardation protein interacting protein
IPR008081 117 133 PR01698 Cytoplasmic fragile X mental retardation protein interacting protein
IPR008081 157 186 PR01698 Cytoplasmic fragile X mental retardation protein interacting protein
IPR008081 278 293 PR01698 Cytoplasmic fragile X mental retardation protein interacting protein
IPR008081 450 468 PR01698 Cytoplasmic fragile X mental retardation protein interacting protein
IPR008081 570 593 PR01698 Cytoplasmic fragile X mental retardation protein interacting protein
IPR008081 633 651 PR01698 Cytoplasmic fragile X mental retardation protein interacting protein
IPR008081 702 724 PR01698 Cytoplasmic fragile X mental retardation protein interacting protein
IPR008081 762 792 PR01698 Cytoplasmic fragile X mental retardation protein interacting protein
IPR008081 1098 1122 PR01698 Cytoplasmic fragile X mental retardation protein interacting protein
IPR008081 1144 1160 PR01698 Cytoplasmic fragile X mental retardation protein interacting protein
IPR008081 1219 1233 PR01698 Cytoplasmic fragile X mental retardation protein interacting protein
HMMPfam IPR008081 19 1271 PF05994 Cytoplasmic fragile X mental retardation protein interacting protein
Expression profile
Description

Northern blot
Experimental conditions
Primer_f
Primer_r
PCR conditions test

RH mapping information
Description

Chromosome No. 15
Experimental conditions
Panel name Genebridge 4
Primer_f CTACCAGCCAAATTTCAACAC
Primer_r TCATGCTAGAGTGGACGGTGG
PCR product length 98 bp
PCR conditions 95 °C15 sec64 °C60 sec30 cycles
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