Gene/Protein Characteristic Table for KIAA0073
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Product ID ORK00009
Accession No D38552
Description peptidylprolyl isomerase domain and WD repeat containing 1, transcript variant 1
Clone name ha01539
Vector information
The cDNA fragment was inserted at the EcoRV-NotI site of the ...
cDNA sequence DNA sequence (2091 bp)
Predicted protein sequence (645 aa)
Flexi ORF Clone FXC00009
Source Myeloblast cell line (KG-1)
Features of the cloned cDNA sequence

Length: 2091 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).

N-terminal truncation Coding interruption
cloned DNA seq Warning No warning
Integrity of 3' end
Length of 3'UTR 152 bp
Genome contig ID gi51511721f_64794896
PolyA signal sequence
Flanking genome sequence
(124237 - 124286)

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class
Ensembl gnome browser 5 f 64894896 64919131 11 100.0 Perfect prediction
Features of the protein sequence

Length: 645 aa
Result of homology search against nr database (FASTA output, Multiple alignment)
Entry Exp ID% Protein Source
Q96BP3 0 100.0 Peptidylprolyl ...
Homo sapiens
XP_001164190 0 99.5 peptidylprolyl ...
Pan troglodytes
XP_001085845 0 99.4 similar to pept...
Macaca mulatta
Q5NVL7 0 98.9 Peptidylprolyl ...
Pongo abelii
XP_001492861 0 97.8 peptidylprolyl ...
Equus caballus
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of homology search against HUGE database (FASTA output, Multiple alignment)
No significant homologues
Result of motif / domain search (InterProScan and SOSUI)

Result of InterProScan

Search method interpro_ID From To Entry Definition
FPrintScan IPR002130 506 521 PR00153 Peptidyl-prolyl cis-trans isomerase
IPR002130 532 544 PR00153 Peptidyl-prolyl cis-trans isomerase
IPR002130 575 590 PR00153 Peptidyl-prolyl cis-trans isomerase
IPR002130 590 602 PR00153 Peptidyl-prolyl cis-trans isomerase
IPR002130 603 618 PR00153 Peptidyl-prolyl cis-trans isomerase
HMMPfam IPR001680 88 116 PF00400 WD40 repeat
IPR001680 122 160 PF00400 WD40 repeat
IPR001680 283 307 PF00400 WD40 repeat
IPR002130 492 645 PF00160 Peptidyl-prolyl cis-trans isomerase
HMMSmart IPR001680 79 116 SM00320 WD40 repeat
IPR001680 121 160 SM00320 WD40 repeat
IPR001680 210 250 SM00320 WD40 repeat
IPR001680 268 307 SM00320 WD40 repeat
ProfileScan IPR001680 85 169 PS50294 WD40 repeat
IPR001680 128 169 PS50082 WD40 repeat
IPR002130 489 644 PS50072 Peptidyl-prolyl cis-trans isomerase
Expression profile

Northern blot
Experimental conditions
PCR conditions test

RH mapping information

Chromosome No. 5
Experimental conditions
Panel name Genebridge 4
PCR product length 120 bp
PCR conditions 95 °C15 sec64 °C60 sec30 cycles
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