hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-16372102/chunk_1/iprscan-20080501-16372102.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0073 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00160.11.fs Cyclophilin type peptidyl-prolyl cis-tr 219.9 4.2e-64 1 PF00160.11.ls Cyclophilin type peptidyl-prolyl cis-tr 221.7 1.5e-63 1 PF00400.22.ls WD domain, G-beta repeat 70.8 4e-18 4 PF00400.22.fs WD domain, G-beta repeat 61.4 2.4e-16 4 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00400.22.fs 1/4 88 116 .. 8 38 .] 13.9 0.006 PF00400.22.ls 2/4 122 160 .. 1 38 [] 24.1 0.00048 PF00400.22.fs 2/4 122 160 .. 1 38 [] 22.1 3e-05 PF00400.22.fs 4/4 283 307 .. 13 38 .] 19.0 0.00022 PF00160.11.ls 1/1 492 645 .] 1 178 [] 221.7 1.5e-63 PF00160.11.fs 1/1 492 645 .] 1 178 [] 219.9 4.2e-64 Alignments of top-scoring domains: PF00400.22.fs: domain 1 of 4, from 88 to 116: score 13.9, E = 0.006 *->HtstVtcvafspdsgpllasgSrDgtikiWd<-* H + +t v + +++++S+Dg++k W+ KIAA0073 88 HRDVITHVVCTKT--DFIITASHDGHVKFWK 116 PF00400.22.ls: domain 2 of 4, from 122 to 160: score 24.1, E = 0.00048 *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-* e +++++ H + ++++a+s + g l++s ++D+ k++d KIAA0073 122 IEFVkHFrSHLGVIESIAVSSE-GALFCSVGDDKAMKVFD 160 PF00400.22.fs: domain 2 of 4, from 122 to 160: score 22.1, E = 3e-05 *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-* e +++++ H + ++++a+s + g l++s ++D+ k++d KIAA0073 122 IEFVkHFrSHLGVIESIAVSSE-GALFCSVGDDKAMKVFD 160 PF00400.22.fs: domain 4 of 4, from 283 to 307: score 19.0, E = 0.00022 *->tcvafspdsgpllasgSrDgtikiWd<-* t+v+fspd g+ +a+ ++D++++i+ KIAA0073 283 TSVCFSPD-GKKIATIGSDRKVRIFR 307 PF00160.11.ls: domain 1 of 1, from 492 to 645: score 221.7, E = 1.5e-63 *->kvyFDveiggkpaGRIvfeLfddvvPkTveNFraLctgekGfGsGKk + ++ g+ I +Lf+ ++PkTveNF ++++ KIAA0073 492 SAIIHTSMGD-----IHTKLFPVECPKTVENFCVHSRNGY------- 526 LhYkGStFHRVIPgFMiQGGDFtegnGtGGkSIYGekkPFkDE.nfnlkh Y+G tFHR+I+gFMiQ GD ++g+G GG+SI G F+DE +l+h KIAA0073 527 --YNGHTFHRIIKGFMIQTGD-PTGTGMGGESIWGGE--FEDEfHSTLRH 571 dgpGlLSMANAGpnTNGSQFFIttvktpWLDGrDaKHVVFGkViddeGMd d+p +LSMANAG nTNGSQFFIt+v+tpWLD+ KH+VFG V+ +GM+ KIAA0073 572 DRPYTLSMANAGSNTNGSQFFITVVPTPWLDN---KHTVFGRVT--KGME 616 VVkkIEsvgTdsggmyqnkpskeVvIidcgel<-* VV I++v+ + +kp+ +V Ii+ + KIAA0073 617 VVQRISNVKVNPK---TDKPYEDVSIINITVK 645 PF00160.11.fs: domain 1 of 1, from 492 to 645: score 219.9, E = 4.2e-64 *->kvyFDveiggkpaGRIvfeLfddvvPkTveNFraLctgekGfGsGKk + ++ g+ I +Lf+ ++PkTveNF ++++ KIAA0073 492 SAIIHTSMGD-----IHTKLFPVECPKTVENFCVHSRNGY------- 526 LhYkGStFHRVIPgFMiQGGDFtegnGtGGkSIYGekkPFkDE.nfnlkh Y+G tFHR+I+gFMiQ GD ++g+G GG+SI G F+DE +l+h KIAA0073 527 --YNGHTFHRIIKGFMIQTGD-PTGTGMGGESIWGGE--FEDEfHSTLRH 571 dgpGlLSMANAGpnTNGSQFFIttvktpWLDGrDaKHVVFGkViddeGMd d+p +LSMANAG nTNGSQFFIt+v+tpWLD+ KH+VFG V+ +GM+ KIAA0073 572 DRPYTLSMANAGSNTNGSQFFITVVPTPWLDN---KHTVFGRVT--KGME 616 VVkkIEsvgTdsggmyqnkpskeVvIidcgel<-* VV I++v+ + +kp+ +V Ii+ + KIAA0073 617 VVQRISNVKVNPK---TDKPYEDVSIINITVK 645 //