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[1][TOP]
>UniRef100_P38023 RNA polymerase sigma factor rpoD1 n=1 Tax=Synechococcus elongatus
           PCC 7942 RepID=RPOD1_SYNE7
          Length = 399

 Score = 54.3 bits (129), Expect = 4e-06
 Identities = 36/100 (36%), Positives = 45/100 (45%), Gaps = 16/100 (16%)
 Frame = +1

Query: 220 PVAAPVKRKVRRTRRARAA----------------DDSDDEDDDSPTRRRVVKKKTKKRS 351
           P   P + K +R+ R +A                 D  DDED          K K K R 
Sbjct: 25  PALKPAETKAKRSSRKKATTAVVEPATTIAPTADVDAIDDEDSVGEDEDAAAKAKAKVRK 84

Query: 352 QTSEDGMRAYLQEIGSESLLGAAMEVQLATEIAGLYELER 471
             +ED +R YLQEIG   LL A  E++LA +IA L  LER
Sbjct: 85  TYTEDSIRLYLQEIGRIRLLRADEEIELARQIADLLALER 124

[2][TOP]
>UniRef100_Q8DL79 RNA polymerase sigma factor n=1 Tax=Thermosynechococcus elongatus
           BP-1 RepID=Q8DL79_THEEB
          Length = 418

 Score = 53.1 bits (126), Expect = 1e-05
 Identities = 28/68 (41%), Positives = 44/68 (64%), Gaps = 1/68 (1%)
 Frame = +1

Query: 277 DDSDDEDDDSPTRRRVVKKKTK-KRSQTSEDGMRAYLQEIGSESLLGAAMEVQLATEIAG 453
           ++  D+ D  PT+ R  +++T+ K+   +ED +R YLQEIG   LL A  E++LA +IA 
Sbjct: 73  EEVSDDLDGKPTKGRASRRRTQVKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIAD 132

Query: 454 LYELERAQ 477
           L E+ER +
Sbjct: 133 LLEMERVR 140

[3][TOP]
>UniRef100_Q2JS52 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. JA-3-3Ab
           RepID=Q2JS52_SYNJA
          Length = 404

 Score = 53.1 bits (126), Expect = 1e-05
 Identities = 32/79 (40%), Positives = 44/79 (55%), Gaps = 11/79 (13%)
 Frame = +1

Query: 274 ADDSDDEDDD-----------SPTRRRVVKKKTKKRSQTSEDGMRAYLQEIGSESLLGAA 420
           A D DDEDD+           +  + R  +K   K+   ++D +R YLQEIG   LL A 
Sbjct: 48  AFDEDDEDDEESLEEDADAAAAAAKGRSKRKAASKKKPYTDDSIRVYLQEIGRIRLLRAD 107

Query: 421 MEVQLATEIAGLYELERAQ 477
            E++LA +IA L ELERA+
Sbjct: 108 EEIELARKIADLLELERAR 126

[4][TOP]
>UniRef100_A2C7M0 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
           MIT 9303 RepID=A2C7M0_PROM3
          Length = 444

 Score = 53.1 bits (126), Expect = 1e-05
 Identities = 48/166 (28%), Positives = 71/166 (42%)
 Frame = +1

Query: 1   ATSSVAARLNALRLTDPSAFLPETQIIPTVAPTPVAPVAPAPDALSSPTSMPDMNLAAPA 180
           A  +V A+   ++ T P A      +  + A    +P A    A  +PT   +++L A  
Sbjct: 27  AKGTVKAKAKKVKATAPKAKTAAKPV--SSAAKASSPKAKKAKATPTPTVSKNLDLTA-- 82

Query: 181 VASALAAPVTIQSPVAAPVKRKVRRTRRARAADDSDDEDDDSPTRRRVVKKKTKKRSQTS 360
               L A     +P A+        T  ++AA  +  E D     R +   K   +   +
Sbjct: 83  --DKLLATAATSAPKASA------ETESSQAAAKASSEADAKA--RALANIKIGPKGVYT 132

Query: 361 EDGMRAYLQEIGSESLLGAAMEVQLATEIAGLYELERAQATFRSDH 498
           ED +R YLQEIG   LL    E++LA +IA L  LE     F SDH
Sbjct: 133 EDSIRVYLQEIGRIRLLRPDEEIELARKIADLLHLEELAEQFNSDH 178