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[1][TOP]
>UniRef100_B4WPM0 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. PCC 7335
RepID=B4WPM0_9SYNE
Length = 404
Score = 211 bits (537), Expect = 3e-53
Identities = 107/177 (60%), Positives = 136/177 (76%)
Frame = +1
Query: 7 DMDVAALRRQLRCGLRAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEK 186
DM + A RR+L G RAK++MV +NLRLVVSIAKKY+NRGL QDLIQEGS+GLIR AEK
Sbjct: 152 DMPLPAFRRRLYQGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEK 211
Query: 187 YDASKGFRFSTYATWWIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAP 366
+D KG++FSTYATWWIRQAITRAIAD SR IRLPVH+ +T++ ++KT+KLLS ELGR P
Sbjct: 212 FDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQELGRKP 271
Query: 367 TEAEISARSNLPVAKMRFLADASQSTVSLDMPIGKKSGGDPGCATLGSFIVWSGDDP 537
TE EI+ R + + K+RF+A ++Q +SL+ PIGK+ + LG FI G+ P
Sbjct: 272 TEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEED-----SRLGDFIESDGETP 323
[2][TOP]
>UniRef100_B4W0Y8 RNA polymerase sigma factor n=1 Tax=Microcoleus chthonoplastes PCC
7420 RepID=B4W0Y8_9CYAN
Length = 380
Score = 209 bits (532), Expect = 1e-52
Identities = 105/177 (59%), Positives = 137/177 (77%)
Frame = +1
Query: 7 DMDVAALRRQLRCGLRAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEK 186
+M++ A R++L G RAKE+MV +NLRLVVSIAKKY+NRGL QDLIQEGS+GLIR AEK
Sbjct: 128 EMELPAFRQRLFLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEK 187
Query: 187 YDASKGFRFSTYATWWIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAP 366
+D KG++FSTYATWWIRQAITRAIAD SR IRLPVH+ +T++ ++KT+K+LS ELGR P
Sbjct: 188 FDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKILSQELGRKP 247
Query: 367 TEAEISARSNLPVAKMRFLADASQSTVSLDMPIGKKSGGDPGCATLGSFIVWSGDDP 537
TE EI+ R + + K+RF+A ++Q +SL+ PIGK+ + LG FI G+ P
Sbjct: 248 TEEEIADRMEMTIEKLRFIAKSAQLPISLETPIGKEED-----SRLGDFIEADGETP 299
[3][TOP]
>UniRef100_B8HPM3 RNA polymerase sigma factor n=1 Tax=Cyanothece sp. PCC 7425
RepID=B8HPM3_CYAP4
Length = 378
Score = 209 bits (531), Expect = 1e-52
Identities = 104/177 (58%), Positives = 135/177 (76%)
Frame = +1
Query: 7 DMDVAALRRQLRCGLRAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEK 186
DM + + R +L G RAK++MV +NLRLVVSIAKKY+NRGL QDLIQEGS+GLIR AEK
Sbjct: 126 DMPLQSFRHRLHIGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEK 185
Query: 187 YDASKGFRFSTYATWWIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAP 366
+D KG++FSTYATWWIRQAITRAIAD SR IRLPVH+ +T++ ++KT+KLLS E+GR P
Sbjct: 186 FDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKP 245
Query: 367 TEAEISARSNLPVAKMRFLADASQSTVSLDMPIGKKSGGDPGCATLGSFIVWSGDDP 537
TE EI+ R + + K+RF+A ++Q +SL+ PIGK+ + LG FI G+ P
Sbjct: 246 TEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEED-----SRLGDFIESDGETP 297
[4][TOP]
>UniRef100_A0YTZ3 RNA polymerase sigma factor n=1 Tax=Lyngbya sp. PCC 8106
RepID=A0YTZ3_9CYAN
Length = 391
Score = 209 bits (531), Expect = 1e-52
Identities = 105/177 (59%), Positives = 135/177 (76%)
Frame = +1
Query: 7 DMDVAALRRQLRCGLRAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEK 186
DM + RR+L G RAK++MV +NLRLVVSIAKKY+NRGL QDLIQEGS+GLIR AEK
Sbjct: 139 DMALPEFRRRLYLGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEK 198
Query: 187 YDASKGFRFSTYATWWIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAP 366
+D KG++FSTYATWWIRQAITRAIAD SR IRLPVH+ +T++ ++KT+KLLS E+GR P
Sbjct: 199 FDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKP 258
Query: 367 TEAEISARSNLPVAKMRFLADASQSTVSLDMPIGKKSGGDPGCATLGSFIVWSGDDP 537
TE EI+ R + + K+RF+A ++Q +SL+ PIGK+ + LG FI G+ P
Sbjct: 259 TEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEED-----SRLGDFIESDGETP 310
[5][TOP]
>UniRef100_B5VWQ7 RNA polymerase sigma factor n=1 Tax=Arthrospira maxima CS-328
RepID=B5VWQ7_SPIMA
Length = 387
Score = 208 bits (530), Expect = 2e-52
Identities = 105/177 (59%), Positives = 135/177 (76%)
Frame = +1
Query: 7 DMDVAALRRQLRCGLRAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEK 186
DM + RR+L G RAK++MV +NLRLVVSIAKKY+NRGL QDLIQEGS+GLIR AEK
Sbjct: 135 DMRLPEFRRRLFLGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEK 194
Query: 187 YDASKGFRFSTYATWWIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAP 366
+D KG++FSTYATWWIRQAITRAIAD SR IRLPVH+ +T++ ++KT+KLLS E+GR P
Sbjct: 195 FDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKP 254
Query: 367 TEAEISARSNLPVAKMRFLADASQSTVSLDMPIGKKSGGDPGCATLGSFIVWSGDDP 537
TE EI+ R + + K+RF+A ++Q +SL+ PIGK+ + LG FI G+ P
Sbjct: 255 TEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEED-----SRLGDFIESDGETP 306
[6][TOP]
>UniRef100_B0CDC4 RNA polymerase sigma factor n=1 Tax=Acaryochloris marina MBIC11017
RepID=B0CDC4_ACAM1
Length = 371
Score = 208 bits (529), Expect = 2e-52
Identities = 104/177 (58%), Positives = 134/177 (75%)
Frame = +1
Query: 7 DMDVAALRRQLRCGLRAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEK 186
DM + R +L G RAK++MV +NLRLVVSIAKKY+NRGL QDLIQEGS+GLIR AEK
Sbjct: 119 DMPLNRFRHRLHAGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEK 178
Query: 187 YDASKGFRFSTYATWWIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAP 366
+D KG++FSTYATWWIRQAITRAIAD SR IRLPVH+ +T++ ++KT+KLLS E+GR P
Sbjct: 179 FDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKP 238
Query: 367 TEAEISARSNLPVAKMRFLADASQSTVSLDMPIGKKSGGDPGCATLGSFIVWSGDDP 537
TE EI+ R + + K+RF+A ++Q +SL+ PIGK+ + LG FI G+ P
Sbjct: 239 TEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEED-----SRLGDFIESDGETP 290
[7][TOP]
>UniRef100_Q10UV2 RNA polymerase sigma factor n=1 Tax=Trichodesmium erythraeum IMS101
RepID=Q10UV2_TRIEI
Length = 386
Score = 207 bits (528), Expect = 3e-52
Identities = 104/177 (58%), Positives = 135/177 (76%)
Frame = +1
Query: 7 DMDVAALRRQLRCGLRAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEK 186
DM++ +R+L G RAKE+MV +NLRLVVSIAKKY+NRGL QDLIQEGS+GLIR AEK
Sbjct: 134 DMELPKFKRRLILGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEK 193
Query: 187 YDASKGFRFSTYATWWIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAP 366
+D KG++FSTYATWWIRQAITRAIAD SR IRLPVH+ +T++ ++KT+KLLS E+GR P
Sbjct: 194 FDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKP 253
Query: 367 TEAEISARSNLPVAKMRFLADASQSTVSLDMPIGKKSGGDPGCATLGSFIVWSGDDP 537
TE EI+ + + K+RF+A ++Q +SL+ PIGK+ + LG FI G+ P
Sbjct: 254 TEEEIATSMEMTIEKLRFIAKSAQLPISLETPIGKEED-----SRLGDFIESDGETP 305
[8][TOP]
>UniRef100_Q2JJL6 RNA polymerase sigma factor n=1 Tax=Synechococcus sp.
JA-2-3B'a(2-13) RepID=Q2JJL6_SYNJB
Length = 403
Score = 207 bits (527), Expect = 4e-52
Identities = 105/176 (59%), Positives = 133/176 (75%)
Frame = +1
Query: 10 MDVAALRRQLRCGLRAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEKY 189
M + RR+L G RAKE+MV +NLRLVVSIAKKY+NRGL QDLIQEGS+GLIR AEK+
Sbjct: 152 MSLPEFRRRLHRGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKF 211
Query: 190 DASKGFRFSTYATWWIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAPT 369
D KG++FSTYATWWIRQAITRAIAD SR IRLPVH+ +T++ ++K +KLLS ELGR PT
Sbjct: 212 DHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKVTKLLSQELGRKPT 271
Query: 370 EAEISARSNLPVAKMRFLADASQSTVSLDMPIGKKSGGDPGCATLGSFIVWSGDDP 537
E EI+ R + + K+RF+A ++Q +SL+ PIGK+ + LG FI G+ P
Sbjct: 272 EEEIATRMEITIEKLRFIAKSAQLPISLETPIGKEED-----SRLGDFIESDGETP 322
[9][TOP]
>UniRef100_Q8DL79 RNA polymerase sigma factor n=1 Tax=Thermosynechococcus elongatus
BP-1 RepID=Q8DL79_THEEB
Length = 418
Score = 207 bits (526), Expect = 5e-52
Identities = 105/176 (59%), Positives = 134/176 (76%)
Frame = +1
Query: 10 MDVAALRRQLRCGLRAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEKY 189
M V A R +L G +AKE+MV +NLRLVVSIAKKY+NRGL QDLIQEGS+GLIR AEK+
Sbjct: 167 MTVPAFRHRLFVGRKAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKF 226
Query: 190 DASKGFRFSTYATWWIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAPT 369
D KG++FSTYATWWIRQAITRAIAD SR IRLPVH+ +T++ ++KT+KLLS E+GR PT
Sbjct: 227 DHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPT 286
Query: 370 EAEISARSNLPVAKMRFLADASQSTVSLDMPIGKKSGGDPGCATLGSFIVWSGDDP 537
E EI+ R + + K+RF+A ++Q +SL+ PIGK+ + LG FI G+ P
Sbjct: 287 EEEIADRMEMTIEKLRFIAKSAQLPISLETPIGKEED-----SRLGDFIESDGETP 337
[10][TOP]
>UniRef100_Q9L4T2 RNA polymerase sigma factor n=1 Tax=Nostoc punctiforme PCC 73102
RepID=Q9L4T2_NOSP7
Length = 389
Score = 206 bits (523), Expect = 1e-51
Identities = 103/176 (58%), Positives = 134/176 (76%)
Frame = +1
Query: 10 MDVAALRRQLRCGLRAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEKY 189
+ + A R +L G RAK++MV +NLRLVVSIAKKY+NRGL QDLIQEGS+GLIR AEK+
Sbjct: 138 LPLPAFRYRLHVGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKF 197
Query: 190 DASKGFRFSTYATWWIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAPT 369
D KG++FSTYATWWIRQAITRAIAD SR IRLPVH+ +T++ ++KT+KLLS E+GR PT
Sbjct: 198 DHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPT 257
Query: 370 EAEISARSNLPVAKMRFLADASQSTVSLDMPIGKKSGGDPGCATLGSFIVWSGDDP 537
E EI+ R + + K+RF+A ++Q +SL+ PIGK+ + LG FI G+ P
Sbjct: 258 EEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEED-----SRLGDFIESDGETP 308
[11][TOP]
>UniRef100_P26683 RNA polymerase sigma factor rpoD n=2 Tax=Nostocaceae
RepID=RPOD_ANASP
Length = 390
Score = 206 bits (523), Expect = 1e-51
Identities = 103/176 (58%), Positives = 134/176 (76%)
Frame = +1
Query: 10 MDVAALRRQLRCGLRAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEKY 189
+ + A R +L G RAK++MV +NLRLVVSIAKKY+NRGL QDLIQEGS+GLIR AEK+
Sbjct: 139 LPLPAFRYRLHIGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKF 198
Query: 190 DASKGFRFSTYATWWIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAPT 369
D KG++FSTYATWWIRQAITRAIAD SR IRLPVH+ +T++ ++KT+KLLS E+GR PT
Sbjct: 199 DHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPT 258
Query: 370 EAEISARSNLPVAKMRFLADASQSTVSLDMPIGKKSGGDPGCATLGSFIVWSGDDP 537
E EI+ R + + K+RF+A ++Q +SL+ PIGK+ + LG FI G+ P
Sbjct: 259 EEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEED-----SRLGDFIESDGETP 309
[12][TOP]
>UniRef100_Q5N3Q1 RNA polymerase sigma factor n=1 Tax=Synechococcus elongatus PCC
6301 RepID=Q5N3Q1_SYNP6
Length = 399
Score = 205 bits (522), Expect = 1e-51
Identities = 104/177 (58%), Positives = 134/177 (75%)
Frame = +1
Query: 7 DMDVAALRRQLRCGLRAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEK 186
D + RR+L G RAK++MV +NLRLVVSIAKKY+NRGL QDLIQEGS+GLIR AEK
Sbjct: 147 DSPLDEFRRRLFRGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEK 206
Query: 187 YDASKGFRFSTYATWWIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAP 366
+D KG++FSTYATWWIRQAITRAIAD SR IRLPVH+ +T++ ++KT+KLLS E+GR P
Sbjct: 207 FDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKP 266
Query: 367 TEAEISARSNLPVAKMRFLADASQSTVSLDMPIGKKSGGDPGCATLGSFIVWSGDDP 537
TE EI+ R + + K+RF+A ++Q +SL+ PIGK+ + LG FI G+ P
Sbjct: 267 TEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEED-----SRLGDFIEADGETP 318
[13][TOP]
>UniRef100_Q46GS6 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
NATL2A RepID=Q46GS6_PROMT
Length = 420
Score = 205 bits (522), Expect = 1e-51
Identities = 104/179 (58%), Positives = 135/179 (75%)
Frame = +1
Query: 1 VTDMDVAALRRQLRCGLRAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGA 180
+ DM +A RR+L G RAKE+MV +NLRLVVSIAKKY+NRGL QDLIQEGS+GLIR A
Sbjct: 164 LADMPLARFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAA 223
Query: 181 EKYDASKGFRFSTYATWWIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGR 360
EK+D KG++FSTYATWWIRQAITRAIAD SR IRLPVH+ +T++ ++KT+K+LS E GR
Sbjct: 224 EKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGR 283
Query: 361 APTEAEISARSNLPVAKMRFLADASQSTVSLDMPIGKKSGGDPGCATLGSFIVWSGDDP 537
PTE EI+ + + K+RF+A ++Q +SL+ PIGK+ + LG FI ++P
Sbjct: 284 KPTEEEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEED-----SRLGDFIEADIENP 337
[14][TOP]
>UniRef100_A0ZJC3 RNA polymerase sigma factor n=1 Tax=Nodularia spumigena CCY9414
RepID=A0ZJC3_NODSP
Length = 391
Score = 205 bits (522), Expect = 1e-51
Identities = 103/172 (59%), Positives = 132/172 (76%)
Frame = +1
Query: 22 ALRRQLRCGLRAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEKYDASK 201
A R +L G RAK++MV +NLRLVVSIAKKY+NRGL QDLIQEGS+GLIR AEK+D K
Sbjct: 144 AFRYRLHIGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEK 203
Query: 202 GFRFSTYATWWIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAPTEAEI 381
G++FSTYATWWIRQAITRAIAD SR IRLPVH+ +T++ ++KT+KLLS E+GR PTE EI
Sbjct: 204 GYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEI 263
Query: 382 SARSNLPVAKMRFLADASQSTVSLDMPIGKKSGGDPGCATLGSFIVWSGDDP 537
+ R + + K+RF+A ++Q +SL+ PIGK+ + LG FI G+ P
Sbjct: 264 ATRMEMTIEKLRFIAKSAQLPISLETPIGKEED-----SRLGDFIESDGETP 310
[15][TOP]
>UniRef100_P38023 RNA polymerase sigma factor rpoD1 n=1 Tax=Synechococcus elongatus
PCC 7942 RepID=RPOD1_SYNE7
Length = 399
Score = 205 bits (522), Expect = 1e-51
Identities = 104/177 (58%), Positives = 134/177 (75%)
Frame = +1
Query: 7 DMDVAALRRQLRCGLRAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEK 186
D + RR+L G RAK++MV +NLRLVVSIAKKY+NRGL QDLIQEGS+GLIR AEK
Sbjct: 147 DSPLDEFRRRLFRGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEK 206
Query: 187 YDASKGFRFSTYATWWIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAP 366
+D KG++FSTYATWWIRQAITRAIAD SR IRLPVH+ +T++ ++KT+KLLS E+GR P
Sbjct: 207 FDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKP 266
Query: 367 TEAEISARSNLPVAKMRFLADASQSTVSLDMPIGKKSGGDPGCATLGSFIVWSGDDP 537
TE EI+ R + + K+RF+A ++Q +SL+ PIGK+ + LG FI G+ P
Sbjct: 267 TEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEED-----SRLGDFIEADGETP 318
[16][TOP]
>UniRef100_Q59965 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. PCC 7002
RepID=Q59965_SYNP2
Length = 375
Score = 205 bits (521), Expect = 2e-51
Identities = 104/176 (59%), Positives = 134/176 (76%)
Frame = +1
Query: 10 MDVAALRRQLRCGLRAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEKY 189
M + RR+L G RAK++MV +NLRLVVSIAKKY+NRGL QDLIQEGS+GLIR AEK+
Sbjct: 124 MPLKDFRRRLFHGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKF 183
Query: 190 DASKGFRFSTYATWWIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAPT 369
D KG++FSTYATWWIRQAITRAIAD SR IRLPVH+ +T++ ++KT+K+LS ELGR PT
Sbjct: 184 DHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKILSQELGRKPT 243
Query: 370 EAEISARSNLPVAKMRFLADASQSTVSLDMPIGKKSGGDPGCATLGSFIVWSGDDP 537
E EI+ R + + K+RF+A ++Q +SL+ PIGK+ + LG FI G+ P
Sbjct: 244 EEEIAERMEMTIEKLRFIAKSAQLPISLETPIGKEED-----SRLGDFIEADGETP 294
[17][TOP]
>UniRef100_Q2JS52 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. JA-3-3Ab
RepID=Q2JS52_SYNJA
Length = 404
Score = 205 bits (521), Expect = 2e-51
Identities = 104/176 (59%), Positives = 132/176 (75%)
Frame = +1
Query: 10 MDVAALRRQLRCGLRAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEKY 189
M + RR+L G RAKE+MV +NLRLVVSIAKKY+NRGL QDLIQEGS+GLIR AEK+
Sbjct: 153 MSLPEFRRRLHRGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKF 212
Query: 190 DASKGFRFSTYATWWIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAPT 369
D KG++FSTYATWWIRQAITRAIAD SR IRLPVH+ +T++ ++K +K LS ELGR PT
Sbjct: 213 DHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKVTKQLSQELGRRPT 272
Query: 370 EAEISARSNLPVAKMRFLADASQSTVSLDMPIGKKSGGDPGCATLGSFIVWSGDDP 537
E EI+ R + + K+RF+A ++Q +SL+ PIGK+ + LG FI G+ P
Sbjct: 273 EEEIATRMEITIEKLRFIAKSAQLPISLETPIGKEED-----SRLGDFIESEGETP 323
[18][TOP]
>UniRef100_B7KDV7 RNA polymerase sigma factor n=1 Tax=Cyanothece sp. PCC 7424
RepID=B7KDV7_CYAP7
Length = 376
Score = 204 bits (520), Expect = 2e-51
Identities = 102/176 (57%), Positives = 135/176 (76%)
Frame = +1
Query: 10 MDVAALRRQLRCGLRAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEKY 189
M++ A +R+L G RAK++MV +NLRLVVSIAKKY+NRGL QDLIQEGS+GLIR AEK+
Sbjct: 125 MELPAFQRRLYLGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKF 184
Query: 190 DASKGFRFSTYATWWIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAPT 369
D KG++FSTYATWWIRQAITRAIAD SR IRLPVH+ +T++ ++KT+K+LS E+ R PT
Sbjct: 185 DHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKILSQEMRRKPT 244
Query: 370 EAEISARSNLPVAKMRFLADASQSTVSLDMPIGKKSGGDPGCATLGSFIVWSGDDP 537
E EI+ R + + K+RF+A ++Q +SL+ PIGK+ + LG FI G+ P
Sbjct: 245 EEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEED-----SRLGDFIEADGETP 295
[19][TOP]
>UniRef100_B4AUJ5 RNA polymerase sigma factor n=1 Tax=Cyanothece sp. PCC 7822
RepID=B4AUJ5_9CHRO
Length = 377
Score = 204 bits (520), Expect = 2e-51
Identities = 102/176 (57%), Positives = 135/176 (76%)
Frame = +1
Query: 10 MDVAALRRQLRCGLRAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEKY 189
M++ A +R+L G RAK++MV +NLRLVVSIAKKY+NRGL QDLIQEGS+GLIR AEK+
Sbjct: 126 MELPAFQRRLYLGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKF 185
Query: 190 DASKGFRFSTYATWWIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAPT 369
D KG++FSTYATWWIRQAITRAIAD SR IRLPVH+ +T++ ++KT+K+LS E+ R PT
Sbjct: 186 DHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKILSQEMRRKPT 245
Query: 370 EAEISARSNLPVAKMRFLADASQSTVSLDMPIGKKSGGDPGCATLGSFIVWSGDDP 537
E EI+ R + + K+RF+A ++Q +SL+ PIGK+ + LG FI G+ P
Sbjct: 246 EEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEED-----SRLGDFIEADGETP 296
[20][TOP]
>UniRef100_Q7V2I0 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus subsp.
pastoris str. CCMP1986 RepID=Q7V2I0_PROMP
Length = 396
Score = 204 bits (519), Expect = 3e-51
Identities = 103/179 (57%), Positives = 136/179 (75%)
Frame = +1
Query: 1 VTDMDVAALRRQLRCGLRAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGA 180
+TDM ++ RR+L G RAKE+MV +NLRLVVSIAKKY+NRGL QDLIQEGS+GLIR A
Sbjct: 142 LTDMPLSKFRRRLLLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAA 201
Query: 181 EKYDASKGFRFSTYATWWIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGR 360
EK+D KG++FSTYATWWIRQAITRAIAD SR IRLPVH+ +T++ ++KT+K+LS E GR
Sbjct: 202 EKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGR 261
Query: 361 APTEAEISARSNLPVAKMRFLADASQSTVSLDMPIGKKSGGDPGCATLGSFIVWSGDDP 537
P+E EI+ + + K+RF+A ++Q +SL+ PIGK+ + LG FI ++P
Sbjct: 262 KPSEEEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEED-----SRLGDFIEADIENP 315
[21][TOP]
>UniRef100_A2C0V5 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
NATL1A RepID=A2C0V5_PROM1
Length = 420
Score = 204 bits (518), Expect = 4e-51
Identities = 103/179 (57%), Positives = 134/179 (74%)
Frame = +1
Query: 1 VTDMDVAALRRQLRCGLRAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGA 180
+ DM + RR+L G RAKE+MV +NLRLVVSIAKKY+NRGL QDLIQEGS+GLIR A
Sbjct: 164 LADMPLTRFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAA 223
Query: 181 EKYDASKGFRFSTYATWWIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGR 360
EK+D KG++FSTYATWWIRQAITRAIAD SR IRLPVH+ +T++ ++KT+K+LS E GR
Sbjct: 224 EKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGR 283
Query: 361 APTEAEISARSNLPVAKMRFLADASQSTVSLDMPIGKKSGGDPGCATLGSFIVWSGDDP 537
PTE EI+ + + K+RF+A ++Q +SL+ PIGK+ + LG FI ++P
Sbjct: 284 KPTEEEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEED-----SRLGDFIEADIENP 337
[22][TOP]
>UniRef100_Q7NHG5 RNA polymerase sigma factor n=1 Tax=Gloeobacter violaceus
RepID=Q7NHG5_GLOVI
Length = 400
Score = 203 bits (516), Expect = 7e-51
Identities = 102/170 (60%), Positives = 131/170 (77%)
Frame = +1
Query: 28 RRQLRCGLRAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEKYDASKGF 207
R ++ G RAK++MV +NLRLVVSIAKKY+NRGL QDLIQEGS+GLIR AEK+D KG+
Sbjct: 155 RDRIAYGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGY 214
Query: 208 RFSTYATWWIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAPTEAEISA 387
+FSTYATWWIRQAITRAIAD SR IRLPVH+ +T++ ++KT+KLLS ELGR PTE EI+
Sbjct: 215 KFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQELGRKPTEEEIAT 274
Query: 388 RSNLPVAKMRFLADASQSTVSLDMPIGKKSGGDPGCATLGSFIVWSGDDP 537
R + + K+RF+A ++Q +SL+ PIGK+ + LG FI G+ P
Sbjct: 275 RMEMTIEKLRFIAKSAQLPISLETPIGKEED-----SRLGDFIEADGETP 319
[23][TOP]
>UniRef100_Q0I8I7 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. CC9311
RepID=Q0I8I7_SYNS3
Length = 440
Score = 203 bits (516), Expect = 7e-51
Identities = 103/179 (57%), Positives = 134/179 (74%)
Frame = +1
Query: 1 VTDMDVAALRRQLRCGLRAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGA 180
+ +M V RR+L G RAKE+MV +NLRLVVSIAKKY+NRGL QDLIQEGS+GLIR A
Sbjct: 186 LVEMPVIRFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAA 245
Query: 181 EKYDASKGFRFSTYATWWIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGR 360
EK+D KG++FSTYATWWIRQAITRAIAD SR IRLPVH+ +T++ ++KT+K+LS E GR
Sbjct: 246 EKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGR 305
Query: 361 APTEAEISARSNLPVAKMRFLADASQSTVSLDMPIGKKSGGDPGCATLGSFIVWSGDDP 537
PTE EI+ + + K+RF+A ++Q +SL+ PIGK+ + LG FI ++P
Sbjct: 306 KPTEEEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEED-----SRLGDFIEADIENP 359
[24][TOP]
>UniRef100_A9BEB7 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
MIT 9211 RepID=A9BEB7_PROM4
Length = 425
Score = 203 bits (516), Expect = 7e-51
Identities = 102/179 (56%), Positives = 134/179 (74%)
Frame = +1
Query: 1 VTDMDVAALRRQLRCGLRAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGA 180
+ +M V RR+L G RAKE+MV +NLRLVVSIAKKY+NRGL QDLIQEGS+GLIR A
Sbjct: 171 LVEMPVIRFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAA 230
Query: 181 EKYDASKGFRFSTYATWWIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGR 360
EK+D KG++FSTYATWWIRQAITRAIAD SR IRLPVH+ +T++ ++KT+K+LS E GR
Sbjct: 231 EKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGR 290
Query: 361 APTEAEISARSNLPVAKMRFLADASQSTVSLDMPIGKKSGGDPGCATLGSFIVWSGDDP 537
P+E EI+ + + K+RF+A ++Q +SL+ PIGK+ + LG FI ++P
Sbjct: 291 KPSEEEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEED-----SRLGDFIESDSENP 344
[25][TOP]
>UniRef100_A5GJC2 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. WH 7803
RepID=A5GJC2_SYNPW
Length = 450
Score = 203 bits (516), Expect = 7e-51
Identities = 103/179 (57%), Positives = 134/179 (74%)
Frame = +1
Query: 1 VTDMDVAALRRQLRCGLRAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGA 180
+ +M V RR+L G RAKE+MV +NLRLVVSIAKKY+NRGL QDLIQEGS+GLIR A
Sbjct: 196 LVEMPVIRFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAA 255
Query: 181 EKYDASKGFRFSTYATWWIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGR 360
EK+D KG++FSTYATWWIRQAITRAIAD SR IRLPVH+ +T++ ++KT+K+LS E GR
Sbjct: 256 EKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGR 315
Query: 361 APTEAEISARSNLPVAKMRFLADASQSTVSLDMPIGKKSGGDPGCATLGSFIVWSGDDP 537
PTE EI+ + + K+RF+A ++Q +SL+ PIGK+ + LG FI ++P
Sbjct: 316 KPTEEEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEED-----SRLGDFIEADIENP 369
[26][TOP]
>UniRef100_A2BPX8 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
AS9601 RepID=A2BPX8_PROMS
Length = 394
Score = 203 bits (516), Expect = 7e-51
Identities = 103/177 (58%), Positives = 134/177 (75%)
Frame = +1
Query: 7 DMDVAALRRQLRCGLRAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEK 186
DM +A RR+L G RAKE+MV +NLRLVVSIAKKY+NRGL QDLIQEGS+GLIR AEK
Sbjct: 142 DMPLAKFRRRLLLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEK 201
Query: 187 YDASKGFRFSTYATWWIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAP 366
+D KG++FSTYATWWIRQAITRAIAD SR IRLPVH+ +T++ ++KT+K+LS E GR P
Sbjct: 202 FDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKP 261
Query: 367 TEAEISARSNLPVAKMRFLADASQSTVSLDMPIGKKSGGDPGCATLGSFIVWSGDDP 537
+E EI+ + + K+RF+A ++Q +SL+ PIGK+ + LG FI ++P
Sbjct: 262 SEEEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEED-----SRLGDFIEADIENP 313
[27][TOP]
>UniRef100_A4CRY9 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. WH 7805
RepID=A4CRY9_SYNPV
Length = 447
Score = 203 bits (516), Expect = 7e-51
Identities = 103/179 (57%), Positives = 134/179 (74%)
Frame = +1
Query: 1 VTDMDVAALRRQLRCGLRAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGA 180
+ +M V RR+L G RAKE+MV +NLRLVVSIAKKY+NRGL QDLIQEGS+GLIR A
Sbjct: 193 LVEMPVIRFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAA 252
Query: 181 EKYDASKGFRFSTYATWWIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGR 360
EK+D KG++FSTYATWWIRQAITRAIAD SR IRLPVH+ +T++ ++KT+K+LS E GR
Sbjct: 253 EKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGR 312
Query: 361 APTEAEISARSNLPVAKMRFLADASQSTVSLDMPIGKKSGGDPGCATLGSFIVWSGDDP 537
PTE EI+ + + K+RF+A ++Q +SL+ PIGK+ + LG FI ++P
Sbjct: 313 KPTEEEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEED-----SRLGDFIEADIENP 366
[28][TOP]
>UniRef100_A3Z5L5 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. RS9917
RepID=A3Z5L5_9SYNE
Length = 456
Score = 203 bits (516), Expect = 7e-51
Identities = 103/179 (57%), Positives = 134/179 (74%)
Frame = +1
Query: 1 VTDMDVAALRRQLRCGLRAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGA 180
+ +M V RR+L G RAKE+MV +NLRLVVSIAKKY+NRGL QDLIQEGS+GLIR A
Sbjct: 202 LVEMPVIKFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAA 261
Query: 181 EKYDASKGFRFSTYATWWIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGR 360
EK+D KG++FSTYATWWIRQAITRAIAD SR IRLPVH+ +T++ ++KT+K+LS E GR
Sbjct: 262 EKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGR 321
Query: 361 APTEAEISARSNLPVAKMRFLADASQSTVSLDMPIGKKSGGDPGCATLGSFIVWSGDDP 537
PTE EI+ + + K+RF+A ++Q +SL+ PIGK+ + LG FI ++P
Sbjct: 322 KPTEEEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEED-----SRLGDFIEADIENP 375
[29][TOP]
>UniRef100_B5ILG7 RNA polymerase sigma factor n=1 Tax=Cyanobium sp. PCC 7001
RepID=B5ILG7_9CHRO
Length = 503
Score = 202 bits (515), Expect = 9e-51
Identities = 103/179 (57%), Positives = 133/179 (74%)
Frame = +1
Query: 1 VTDMDVAALRRQLRCGLRAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGA 180
+ DM + RR+L G RAKE+MV +NLRLVVSIAKKY+NRGL QDLIQEGS+GLIR A
Sbjct: 249 LVDMPLIKFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAA 308
Query: 181 EKYDASKGFRFSTYATWWIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGR 360
EK+D KG++FSTYATWWIRQAITRAIAD SR IRLPVH+ +T++ ++KT+K LS E GR
Sbjct: 309 EKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKTLSQEFGR 368
Query: 361 APTEAEISARSNLPVAKMRFLADASQSTVSLDMPIGKKSGGDPGCATLGSFIVWSGDDP 537
PTE EI+ + + K+RF+A ++Q +SL+ PIGK+ + LG FI ++P
Sbjct: 369 KPTEEEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEED-----SRLGDFIEADIENP 422
[30][TOP]
>UniRef100_A3YZH3 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. WH 5701
RepID=A3YZH3_9SYNE
Length = 469
Score = 202 bits (515), Expect = 9e-51
Identities = 103/179 (57%), Positives = 133/179 (74%)
Frame = +1
Query: 1 VTDMDVAALRRQLRCGLRAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGA 180
+ DM RR+L G RAKE+MV +NLRLVVSIAKKY+NRGL QDLIQEGS+GLIR A
Sbjct: 215 LVDMPPVKFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAA 274
Query: 181 EKYDASKGFRFSTYATWWIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGR 360
EK+D KG++FSTYATWWIRQAITRAIAD SR IRLPVH+ +T++ ++KT+K+LS E GR
Sbjct: 275 EKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGR 334
Query: 361 APTEAEISARSNLPVAKMRFLADASQSTVSLDMPIGKKSGGDPGCATLGSFIVWSGDDP 537
PTE EI+ + + K+RF+A ++Q +SL+ PIGK+ + LG FI ++P
Sbjct: 335 KPTEEEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEED-----SRLGDFIEADIENP 388
[31][TOP]
>UniRef100_B0JGK3 RNA polymerase sigma factor n=1 Tax=Microcystis aeruginosa NIES-843
RepID=B0JGK3_MICAN
Length = 416
Score = 202 bits (514), Expect = 1e-50
Identities = 101/174 (58%), Positives = 134/174 (77%)
Frame = +1
Query: 16 VAALRRQLRCGLRAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEKYDA 195
++A +R+L G RAKE+MV +NLRLVVSIAKKY+NRGL QDLIQEGS+GLIR AEK+D
Sbjct: 167 LSAFKRRLYHGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDH 226
Query: 196 SKGFRFSTYATWWIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAPTEA 375
KG++FSTYATWWIRQAITRAIAD SR IRLPVH+ +T++ ++KT+K+LS E+ R PTE
Sbjct: 227 EKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKILSQEMRRKPTEE 286
Query: 376 EISARSNLPVAKMRFLADASQSTVSLDMPIGKKSGGDPGCATLGSFIVWSGDDP 537
EI+ + + + K+RF+A ++Q +SL+ PIGK+ + LG FI G+ P
Sbjct: 287 EIATKMEMTIEKLRFIAKSAQLPISLETPIGKEED-----SRLGDFIEADGETP 335
[32][TOP]
>UniRef100_A5GSD3 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. RCC307
RepID=A5GSD3_SYNR3
Length = 401
Score = 202 bits (514), Expect = 1e-50
Identities = 103/179 (57%), Positives = 133/179 (74%)
Frame = +1
Query: 1 VTDMDVAALRRQLRCGLRAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGA 180
+ DM RR+L G RAKE+MV +NLRLVVSIAKKY+NRGL QDLIQEGS+GLIR A
Sbjct: 147 LVDMPPIKFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAA 206
Query: 181 EKYDASKGFRFSTYATWWIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGR 360
EK+D KG++FSTYATWWIRQAITRAIAD SR IRLPVH+ +T++ ++KT+K+LS E GR
Sbjct: 207 EKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGR 266
Query: 361 APTEAEISARSNLPVAKMRFLADASQSTVSLDMPIGKKSGGDPGCATLGSFIVWSGDDP 537
PTE EI+ + + K+RF+A ++Q +SL+ PIGK+ + LG FI ++P
Sbjct: 267 KPTEEEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEED-----SRLGDFIEADIENP 320
[33][TOP]
>UniRef100_C7QR23 RNA polymerase, sigma 70 subunit, RpoD subfamily n=2 Tax=Cyanothece
RepID=C7QR23_CYAP0
Length = 379
Score = 202 bits (514), Expect = 1e-50
Identities = 101/177 (57%), Positives = 136/177 (76%)
Frame = +1
Query: 7 DMDVAALRRQLRCGLRAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEK 186
+M+ A +R+L G +AK++MV +NLRLVVSIAKKY+NRGL QDLIQEGS+GLIR AEK
Sbjct: 127 NMEWHAFQRRLYLGRKAKDKMVHSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEK 186
Query: 187 YDASKGFRFSTYATWWIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAP 366
+D KG++FSTYATWWIRQAITRAIAD SR IRLPVH+ +T++ ++KT+K+LS E+ R P
Sbjct: 187 FDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKILSQEMRRKP 246
Query: 367 TEAEISARSNLPVAKMRFLADASQSTVSLDMPIGKKSGGDPGCATLGSFIVWSGDDP 537
TE EI+ R + + K+RF+A ++Q +SL+ PIGK+ + LG FI G++P
Sbjct: 247 TEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEED-----SRLGDFIEADGENP 298
[34][TOP]
>UniRef100_B1PVV9 RNA polymerase sigma factor n=1 Tax=Microcystis aeruginosa PCC 7820
RepID=B1PVV9_MICAE
Length = 416
Score = 202 bits (514), Expect = 1e-50
Identities = 101/174 (58%), Positives = 134/174 (77%)
Frame = +1
Query: 16 VAALRRQLRCGLRAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEKYDA 195
++A +R+L G RAKE+MV +NLRLVVSIAKKY+NRGL QDLIQEGS+GLIR AEK+D
Sbjct: 167 LSAFKRRLYHGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDH 226
Query: 196 SKGFRFSTYATWWIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAPTEA 375
KG++FSTYATWWIRQAITRAIAD SR IRLPVH+ +T++ ++KT+K+LS E+ R PTE
Sbjct: 227 EKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKILSQEMRRKPTEE 286
Query: 376 EISARSNLPVAKMRFLADASQSTVSLDMPIGKKSGGDPGCATLGSFIVWSGDDP 537
EI+ + + + K+RF+A ++Q +SL+ PIGK+ + LG FI G+ P
Sbjct: 287 EIATKMEMTIEKLRFIAKSAQLPISLETPIGKEED-----SRLGDFIEADGETP 335
[35][TOP]
>UniRef100_A8YBI5 RNA polymerase sigma factor n=1 Tax=Microcystis aeruginosa PCC 7806
RepID=A8YBI5_MICAE
Length = 416
Score = 202 bits (514), Expect = 1e-50
Identities = 101/174 (58%), Positives = 134/174 (77%)
Frame = +1
Query: 16 VAALRRQLRCGLRAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEKYDA 195
++A +R+L G RAKE+MV +NLRLVVSIAKKY+NRGL QDLIQEGS+GLIR AEK+D
Sbjct: 167 LSAFKRRLYHGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDH 226
Query: 196 SKGFRFSTYATWWIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAPTEA 375
KG++FSTYATWWIRQAITRAIAD SR IRLPVH+ +T++ ++KT+K+LS E+ R PTE
Sbjct: 227 EKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKILSQEMRRKPTEE 286
Query: 376 EISARSNLPVAKMRFLADASQSTVSLDMPIGKKSGGDPGCATLGSFIVWSGDDP 537
EI+ + + + K+RF+A ++Q +SL+ PIGK+ + LG FI G+ P
Sbjct: 287 EIATKMEMTIEKLRFIAKSAQLPISLETPIGKEED-----SRLGDFIEADGETP 335
[36][TOP]
>UniRef100_P52322 RNA polymerase sigma factor rpoD1 n=1 Tax=Microcystis aeruginosa
RepID=RPOD_MICAE
Length = 416
Score = 202 bits (514), Expect = 1e-50
Identities = 101/174 (58%), Positives = 134/174 (77%)
Frame = +1
Query: 16 VAALRRQLRCGLRAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEKYDA 195
++A +R+L G RAKE+MV +NLRLVVSIAKKY+NRGL QDLIQEGS+GLIR AEK+D
Sbjct: 167 LSAFKRRLYHGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDH 226
Query: 196 SKGFRFSTYATWWIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAPTEA 375
KG++FSTYATWWIRQAITRAIAD SR IRLPVH+ +T++ ++KT+K+LS E+ R PTE
Sbjct: 227 EKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKILSQEMRRKPTEE 286
Query: 376 EISARSNLPVAKMRFLADASQSTVSLDMPIGKKSGGDPGCATLGSFIVWSGDDP 537
EI+ + + + K+RF+A ++Q +SL+ PIGK+ + LG FI G+ P
Sbjct: 287 EIATKMEMTIEKLRFIAKSAQLPISLETPIGKEED-----SRLGDFIEADGETP 335
[37][TOP]
>UniRef100_Q7U5C4 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. WH 8102
RepID=Q7U5C4_SYNPX
Length = 471
Score = 202 bits (513), Expect = 2e-50
Identities = 102/179 (56%), Positives = 134/179 (74%)
Frame = +1
Query: 1 VTDMDVAALRRQLRCGLRAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGA 180
+ +M + RR+L G RAKE+MV +NLRLVVSIAKKY+NRGL QDLIQEGS+GLIR A
Sbjct: 217 LVEMPLIRFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAA 276
Query: 181 EKYDASKGFRFSTYATWWIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGR 360
EK+D KG++FSTYATWWIRQAITRAIAD SR IRLPVH+ +T++ ++KT+K+LS E GR
Sbjct: 277 EKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGR 336
Query: 361 APTEAEISARSNLPVAKMRFLADASQSTVSLDMPIGKKSGGDPGCATLGSFIVWSGDDP 537
PTE EI+ + + K+RF+A ++Q +SL+ PIGK+ + LG FI ++P
Sbjct: 337 KPTEEEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEED-----SRLGDFIEADIENP 390
[38][TOP]
>UniRef100_Q3AWQ6 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. CC9902
RepID=Q3AWQ6_SYNS9
Length = 451
Score = 202 bits (513), Expect = 2e-50
Identities = 102/179 (56%), Positives = 134/179 (74%)
Frame = +1
Query: 1 VTDMDVAALRRQLRCGLRAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGA 180
+ +M + RR+L G RAKE+MV +NLRLVVSIAKKY+NRGL QDLIQEGS+GLIR A
Sbjct: 197 LVEMPLIRFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAA 256
Query: 181 EKYDASKGFRFSTYATWWIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGR 360
EK+D KG++FSTYATWWIRQAITRAIAD SR IRLPVH+ +T++ ++KT+K+LS E GR
Sbjct: 257 EKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGR 316
Query: 361 APTEAEISARSNLPVAKMRFLADASQSTVSLDMPIGKKSGGDPGCATLGSFIVWSGDDP 537
PTE EI+ + + K+RF+A ++Q +SL+ PIGK+ + LG FI ++P
Sbjct: 317 KPTEEEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEED-----SRLGDFIEADIENP 370
[39][TOP]
>UniRef100_Q3ALS7 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. CC9605
RepID=Q3ALS7_SYNSC
Length = 435
Score = 202 bits (513), Expect = 2e-50
Identities = 102/179 (56%), Positives = 134/179 (74%)
Frame = +1
Query: 1 VTDMDVAALRRQLRCGLRAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGA 180
+ +M + RR+L G RAKE+MV +NLRLVVSIAKKY+NRGL QDLIQEGS+GLIR A
Sbjct: 181 LVEMPLIRFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAA 240
Query: 181 EKYDASKGFRFSTYATWWIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGR 360
EK+D KG++FSTYATWWIRQAITRAIAD SR IRLPVH+ +T++ ++KT+K+LS E GR
Sbjct: 241 EKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGR 300
Query: 361 APTEAEISARSNLPVAKMRFLADASQSTVSLDMPIGKKSGGDPGCATLGSFIVWSGDDP 537
PTE EI+ + + K+RF+A ++Q +SL+ PIGK+ + LG FI ++P
Sbjct: 301 KPTEEEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEED-----SRLGDFIEADIENP 354
[40][TOP]
>UniRef100_Q31C37 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
MIT 9312 RepID=Q31C37_PROM9
Length = 393
Score = 202 bits (513), Expect = 2e-50
Identities = 102/177 (57%), Positives = 134/177 (75%)
Frame = +1
Query: 7 DMDVAALRRQLRCGLRAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEK 186
DM ++ RR+L G RAKE+MV +NLRLVVSIAKKY+NRGL QDLIQEGS+GLIR AEK
Sbjct: 141 DMPLSKFRRRLLLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEK 200
Query: 187 YDASKGFRFSTYATWWIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAP 366
+D KG++FSTYATWWIRQAITRAIAD SR IRLPVH+ +T++ ++KT+K+LS E GR P
Sbjct: 201 FDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKP 260
Query: 367 TEAEISARSNLPVAKMRFLADASQSTVSLDMPIGKKSGGDPGCATLGSFIVWSGDDP 537
+E EI+ + + K+RF+A ++Q +SL+ PIGK+ + LG FI ++P
Sbjct: 261 SEEEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEED-----SRLGDFIEADIENP 312
[41][TOP]
>UniRef100_A8G3L2 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
MIT 9215 RepID=A8G3L2_PROM2
Length = 393
Score = 202 bits (513), Expect = 2e-50
Identities = 102/177 (57%), Positives = 134/177 (75%)
Frame = +1
Query: 7 DMDVAALRRQLRCGLRAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEK 186
DM ++ RR+L G RAKE+MV +NLRLVVSIAKKY+NRGL QDLIQEGS+GLIR AEK
Sbjct: 141 DMPLSKFRRRLLLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEK 200
Query: 187 YDASKGFRFSTYATWWIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAP 366
+D KG++FSTYATWWIRQAITRAIAD SR IRLPVH+ +T++ ++KT+K+LS E GR P
Sbjct: 201 FDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKP 260
Query: 367 TEAEISARSNLPVAKMRFLADASQSTVSLDMPIGKKSGGDPGCATLGSFIVWSGDDP 537
+E EI+ + + K+RF+A ++Q +SL+ PIGK+ + LG FI ++P
Sbjct: 261 SEEEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEED-----SRLGDFIEADIENP 312
[42][TOP]
>UniRef100_A2BVF8 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
MIT 9515 RepID=A2BVF8_PROM5
Length = 397
Score = 202 bits (513), Expect = 2e-50
Identities = 102/177 (57%), Positives = 134/177 (75%)
Frame = +1
Query: 7 DMDVAALRRQLRCGLRAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEK 186
DM ++ RR+L G RAKE+MV +NLRLVVSIAKKY+NRGL QDLIQEGS+GLIR AEK
Sbjct: 145 DMPLSKFRRRLLLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEK 204
Query: 187 YDASKGFRFSTYATWWIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAP 366
+D KG++FSTYATWWIRQAITRAIAD SR IRLPVH+ +T++ ++KT+K+LS E GR P
Sbjct: 205 FDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKP 264
Query: 367 TEAEISARSNLPVAKMRFLADASQSTVSLDMPIGKKSGGDPGCATLGSFIVWSGDDP 537
+E EI+ + + K+RF+A ++Q +SL+ PIGK+ + LG FI ++P
Sbjct: 265 SEEEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEED-----SRLGDFIEADIENP 316
[43][TOP]
>UniRef100_Q05YJ7 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. BL107
RepID=Q05YJ7_9SYNE
Length = 451
Score = 202 bits (513), Expect = 2e-50
Identities = 102/179 (56%), Positives = 134/179 (74%)
Frame = +1
Query: 1 VTDMDVAALRRQLRCGLRAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGA 180
+ +M + RR+L G RAKE+MV +NLRLVVSIAKKY+NRGL QDLIQEGS+GLIR A
Sbjct: 197 LVEMPLIRFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAA 256
Query: 181 EKYDASKGFRFSTYATWWIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGR 360
EK+D KG++FSTYATWWIRQAITRAIAD SR IRLPVH+ +T++ ++KT+K+LS E GR
Sbjct: 257 EKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGR 316
Query: 361 APTEAEISARSNLPVAKMRFLADASQSTVSLDMPIGKKSGGDPGCATLGSFIVWSGDDP 537
PTE EI+ + + K+RF+A ++Q +SL+ PIGK+ + LG FI ++P
Sbjct: 317 KPTEEEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEED-----SRLGDFIEADIENP 370
[44][TOP]
>UniRef100_Q05RP2 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. RS9916
RepID=Q05RP2_9SYNE
Length = 479
Score = 202 bits (513), Expect = 2e-50
Identities = 102/179 (56%), Positives = 134/179 (74%)
Frame = +1
Query: 1 VTDMDVAALRRQLRCGLRAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGA 180
+ +M + RR+L G RAKE+MV +NLRLVVSIAKKY+NRGL QDLIQEGS+GLIR A
Sbjct: 225 LVEMPLIKFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAA 284
Query: 181 EKYDASKGFRFSTYATWWIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGR 360
EK+D KG++FSTYATWWIRQAITRAIAD SR IRLPVH+ +T++ ++KT+K+LS E GR
Sbjct: 285 EKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGR 344
Query: 361 APTEAEISARSNLPVAKMRFLADASQSTVSLDMPIGKKSGGDPGCATLGSFIVWSGDDP 537
PTE EI+ + + K+RF+A ++Q +SL+ PIGK+ + LG FI ++P
Sbjct: 345 KPTEEEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEED-----SRLGDFIEADIENP 398
[45][TOP]
>UniRef100_D0CLH5 RNA polymerase sigma factor RpoD n=1 Tax=Synechococcus sp. WH 8109
RepID=D0CLH5_9SYNE
Length = 458
Score = 202 bits (513), Expect = 2e-50
Identities = 102/179 (56%), Positives = 134/179 (74%)
Frame = +1
Query: 1 VTDMDVAALRRQLRCGLRAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGA 180
+ +M + RR+L G RAKE+MV +NLRLVVSIAKKY+NRGL QDLIQEGS+GLIR A
Sbjct: 204 LVEMPLIRFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAA 263
Query: 181 EKYDASKGFRFSTYATWWIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGR 360
EK+D KG++FSTYATWWIRQAITRAIAD SR IRLPVH+ +T++ ++KT+K+LS E GR
Sbjct: 264 EKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGR 323
Query: 361 APTEAEISARSNLPVAKMRFLADASQSTVSLDMPIGKKSGGDPGCATLGSFIVWSGDDP 537
PTE EI+ + + K+RF+A ++Q +SL+ PIGK+ + LG FI ++P
Sbjct: 324 KPTEEEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEED-----SRLGDFIEADIENP 377
[46][TOP]
>UniRef100_B9P0P2 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
MIT 9202 RepID=B9P0P2_PROMA
Length = 393
Score = 202 bits (513), Expect = 2e-50
Identities = 102/177 (57%), Positives = 134/177 (75%)
Frame = +1
Query: 7 DMDVAALRRQLRCGLRAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEK 186
DM ++ RR+L G RAKE+MV +NLRLVVSIAKKY+NRGL QDLIQEGS+GLIR AEK
Sbjct: 141 DMPLSKFRRRLLLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEK 200
Query: 187 YDASKGFRFSTYATWWIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAP 366
+D KG++FSTYATWWIRQAITRAIAD SR IRLPVH+ +T++ ++KT+K+LS E GR P
Sbjct: 201 FDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKP 260
Query: 367 TEAEISARSNLPVAKMRFLADASQSTVSLDMPIGKKSGGDPGCATLGSFIVWSGDDP 537
+E EI+ + + K+RF+A ++Q +SL+ PIGK+ + LG FI ++P
Sbjct: 261 SEEEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEED-----SRLGDFIEADIENP 312
[47][TOP]
>UniRef100_Q7VD88 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus
RepID=Q7VD88_PROMA
Length = 438
Score = 201 bits (511), Expect = 3e-50
Identities = 101/179 (56%), Positives = 134/179 (74%)
Frame = +1
Query: 1 VTDMDVAALRRQLRCGLRAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGA 180
+ +M +A RR+L RAKE+MV +NLRLVVSIAKKY+NRGL QDLIQEGS+GLIR A
Sbjct: 184 LVNMPMARFRRRLMLARRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAA 243
Query: 181 EKYDASKGFRFSTYATWWIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGR 360
EK+D KG++FSTYATWWIRQAITRAIAD SR IRLPVH+ +T++ ++KT+K+LS E GR
Sbjct: 244 EKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGR 303
Query: 361 APTEAEISARSNLPVAKMRFLADASQSTVSLDMPIGKKSGGDPGCATLGSFIVWSGDDP 537
P+E EI+ + + K+RF+A ++Q +SL+ PIGK+ + LG FI ++P
Sbjct: 304 KPSEEEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEED-----SRLGDFIESDSENP 357
[48][TOP]
>UniRef100_Q7V698 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
MIT 9313 RepID=Q7V698_PROMM
Length = 461
Score = 201 bits (511), Expect = 3e-50
Identities = 102/179 (56%), Positives = 133/179 (74%)
Frame = +1
Query: 1 VTDMDVAALRRQLRCGLRAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGA 180
+ +M RR+L G RAKE+MV +NLRLVVSIAKKY+NRGL QDLIQEGS+GLIR A
Sbjct: 207 LVEMPNIKFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAA 266
Query: 181 EKYDASKGFRFSTYATWWIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGR 360
EK+D KG++FSTYATWWIRQAITRAIAD SR IRLPVH+ +T++ ++KT+K+LS E GR
Sbjct: 267 EKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGR 326
Query: 361 APTEAEISARSNLPVAKMRFLADASQSTVSLDMPIGKKSGGDPGCATLGSFIVWSGDDP 537
PTE EI+ + + K+RF+A ++Q +SL+ PIGK+ + LG FI ++P
Sbjct: 327 KPTEEEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEED-----SRLGDFIESDTENP 380
[49][TOP]
>UniRef100_A3PBM1 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
MIT 9301 RepID=A3PBM1_PROM0
Length = 394
Score = 201 bits (511), Expect = 3e-50
Identities = 102/177 (57%), Positives = 133/177 (75%)
Frame = +1
Query: 7 DMDVAALRRQLRCGLRAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEK 186
DM + RR+L G RAKE+MV +NLRLVVSIAKKY+NRGL QDLIQEGS+GLIR AEK
Sbjct: 142 DMPLPKFRRRLLLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEK 201
Query: 187 YDASKGFRFSTYATWWIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAP 366
+D KG++FSTYATWWIRQAITRAIAD SR IRLPVH+ +T++ ++KT+K+LS E GR P
Sbjct: 202 FDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKP 261
Query: 367 TEAEISARSNLPVAKMRFLADASQSTVSLDMPIGKKSGGDPGCATLGSFIVWSGDDP 537
+E EI+ + + K+RF+A ++Q +SL+ PIGK+ + LG FI ++P
Sbjct: 262 SEEEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEED-----SRLGDFIEADIENP 313
[50][TOP]
>UniRef100_A2C7M0 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
MIT 9303 RepID=A2C7M0_PROM3
Length = 444
Score = 201 bits (511), Expect = 3e-50
Identities = 102/179 (56%), Positives = 133/179 (74%)
Frame = +1
Query: 1 VTDMDVAALRRQLRCGLRAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGA 180
+ +M RR+L G RAKE+MV +NLRLVVSIAKKY+NRGL QDLIQEGS+GLIR A
Sbjct: 190 LVEMPNIKFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAA 249
Query: 181 EKYDASKGFRFSTYATWWIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGR 360
EK+D KG++FSTYATWWIRQAITRAIAD SR IRLPVH+ +T++ ++KT+K+LS E GR
Sbjct: 250 EKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGR 309
Query: 361 APTEAEISARSNLPVAKMRFLADASQSTVSLDMPIGKKSGGDPGCATLGSFIVWSGDDP 537
PTE EI+ + + K+RF+A ++Q +SL+ PIGK+ + LG FI ++P
Sbjct: 310 KPTEEEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEED-----SRLGDFIESDTENP 363
[51][TOP]
>UniRef100_Q4C7J7 RNA polymerase sigma factor n=1 Tax=Crocosphaera watsonii WH 8501
RepID=Q4C7J7_CROWT
Length = 414
Score = 201 bits (511), Expect = 3e-50
Identities = 101/170 (59%), Positives = 131/170 (77%)
Frame = +1
Query: 28 RRQLRCGLRAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEKYDASKGF 207
+R+L G RAK++MV +NLRLVVSIAKKY+NRGL QDLIQEGS+GLIR AEK+D KG+
Sbjct: 169 KRRLYLGRRAKDKMVHSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGY 228
Query: 208 RFSTYATWWIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAPTEAEISA 387
+FSTYATWWIRQAITRAIAD SR IRLPVH+ +T++ ++KT+KLLS E+ R PTE EI+
Sbjct: 229 KFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMRRKPTEEEIAT 288
Query: 388 RSNLPVAKMRFLADASQSTVSLDMPIGKKSGGDPGCATLGSFIVWSGDDP 537
R + + K+RF+A ++Q +SL+ PIGK+ + LG FI G+ P
Sbjct: 289 RMEMTIEKLRFIAKSAQLPISLETPIGKEED-----SRLGDFIEADGETP 333
[52][TOP]
>UniRef100_P74565 RNA polymerase sigma factor rpoD n=1 Tax=Synechocystis sp. PCC 6803
RepID=RPOD_SYNY3
Length = 425
Score = 201 bits (511), Expect = 3e-50
Identities = 102/173 (58%), Positives = 132/173 (76%)
Frame = +1
Query: 19 AALRRQLRCGLRAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEKYDAS 198
AA RR+L RAK++MV +NLRLVVSIAKKY+NRGL QDLIQEGS+GLIR AEK+D
Sbjct: 177 AAFRRRLFLDRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHE 236
Query: 199 KGFRFSTYATWWIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAPTEAE 378
KG++FSTYATWWIRQAITRAIAD SR IRLPVH+ +T++ ++KT+KLLS E+ R PTE E
Sbjct: 237 KGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMRRKPTEEE 296
Query: 379 ISARSNLPVAKMRFLADASQSTVSLDMPIGKKSGGDPGCATLGSFIVWSGDDP 537
I+ + + + K+RF+A ++Q +SL+ PIGK+ + LG FI G+ P
Sbjct: 297 IAEKMEMTIEKLRFIAKSAQLPISLETPIGKEED-----SRLGDFIEADGETP 344
[53][TOP]
>UniRef100_B1WS32 RNA polymerase sigma factor n=1 Tax=Cyanothece sp. ATCC 51142
RepID=B1WS32_CYAA5
Length = 416
Score = 200 bits (508), Expect = 6e-50
Identities = 100/170 (58%), Positives = 131/170 (77%)
Frame = +1
Query: 28 RRQLRCGLRAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEKYDASKGF 207
+R+L G +AK++MV +NLRLVVSIAKKY+NRGL QDLIQEGS+GLIR AEK+D KG+
Sbjct: 171 KRRLYLGRKAKDKMVHSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGY 230
Query: 208 RFSTYATWWIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAPTEAEISA 387
+FSTYATWWIRQAITRAIAD SR IRLPVH+ +T++ ++KT+KLLS E+ R PTE EI+
Sbjct: 231 KFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMRRKPTEEEIAT 290
Query: 388 RSNLPVAKMRFLADASQSTVSLDMPIGKKSGGDPGCATLGSFIVWSGDDP 537
R + + K+RF+A ++Q +SL+ PIGK+ + LG FI G+ P
Sbjct: 291 RMEMTIEKLRFIAKSAQLPISLETPIGKEED-----SRLGDFIEADGETP 335
[54][TOP]
>UniRef100_A3ISY9 RNA polymerase sigma factor n=1 Tax=Cyanothece sp. CCY0110
RepID=A3ISY9_9CHRO
Length = 416
Score = 200 bits (508), Expect = 6e-50
Identities = 100/170 (58%), Positives = 131/170 (77%)
Frame = +1
Query: 28 RRQLRCGLRAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEKYDASKGF 207
+R+L G +AK++MV +NLRLVVSIAKKY+NRGL QDLIQEGS+GLIR AEK+D KG+
Sbjct: 171 KRRLYLGRKAKDKMVHSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGY 230
Query: 208 RFSTYATWWIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAPTEAEISA 387
+FSTYATWWIRQAITRAIAD SR IRLPVH+ +T++ ++KT+KLLS E+ R PTE EI+
Sbjct: 231 KFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMRRKPTEEEIAT 290
Query: 388 RSNLPVAKMRFLADASQSTVSLDMPIGKKSGGDPGCATLGSFIVWSGDDP 537
R + + K+RF+A ++Q +SL+ PIGK+ + LG FI G+ P
Sbjct: 291 RMEMTIEKLRFIAKSAQLPISLETPIGKEED-----SRLGDFIEADGETP 335
[55][TOP]
>UniRef100_B1X5Q2 RNA polymerase sigma factor n=1 Tax=Paulinella chromatophora
RepID=B1X5Q2_PAUCH
Length = 460
Score = 200 bits (508), Expect = 6e-50
Identities = 101/179 (56%), Positives = 133/179 (74%)
Frame = +1
Query: 1 VTDMDVAALRRQLRCGLRAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGA 180
+ +M + RR+L G RAK +MV +NLRLVVSIAKKY+NRGL QDLIQEGS+GLIR A
Sbjct: 206 LVEMSLIKFRRRLMLGRRAKAKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAA 265
Query: 181 EKYDASKGFRFSTYATWWIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGR 360
EK+D KG++FSTYATWWIRQAITRAIAD SR IRLPVH+ +T++ ++KT+K+LS E GR
Sbjct: 266 EKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGR 325
Query: 361 APTEAEISARSNLPVAKMRFLADASQSTVSLDMPIGKKSGGDPGCATLGSFIVWSGDDP 537
PTE EI+ + + K+RF+A ++Q +SL+ PIGK+ + LG FI ++P
Sbjct: 326 KPTEEEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEED-----SRLGDFIEADIENP 379
[56][TOP]
>UniRef100_Q8S9D0 RNA polymerase sigma factor n=1 Tax=Guillardia theta
RepID=Q8S9D0_GUITH
Length = 490
Score = 199 bits (507), Expect = 8e-50
Identities = 99/175 (56%), Positives = 133/175 (76%)
Frame = +1
Query: 13 DVAALRRQLRCGLRAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEKYD 192
DV R L RAKERMV+ANLRLVVSIAK+Y+NRG+ LQDLIQEGS+GLIR AEK+D
Sbjct: 191 DVKKFRSILHNARRAKERMVAANLRLVVSIAKRYVNRGMSLQDLIQEGSLGLIRAAEKFD 250
Query: 193 ASKGFRFSTYATWWIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAPTE 372
+ KGF+FSTYATWW++QA+TRAIADHSR IRLPVH+ DT++A+RKT++ L++E+GR+PTE
Sbjct: 251 SEKGFKFSTYATWWVKQAVTRAIADHSRTIRLPVHLYDTISAIRKTTRTLNIEIGRSPTE 310
Query: 373 AEISARSNLPVAKMRFLADASQSTVSLDMPIGKKSGGDPGCATLGSFIVWSGDDP 537
EI+ + ++ V K+R + ++Q T+SL+ P+ D + L FI + P
Sbjct: 311 EEIAEKMDMSVEKLRSVLQSAQPTLSLERPL----KNDDDASQLSDFIEADQESP 361
[57][TOP]
>UniRef100_A9BK56 RpoD n=1 Tax=Cryptophyta RepID=A9BK56_9CRYP
Length = 485
Score = 199 bits (507), Expect = 8e-50
Identities = 99/175 (56%), Positives = 133/175 (76%)
Frame = +1
Query: 13 DVAALRRQLRCGLRAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEKYD 192
DV R L RAKERMV+ANLRLVVSIAK+Y+NRG+ LQDLIQEGS+GLIR AEK+D
Sbjct: 191 DVKKFRAILHNARRAKERMVAANLRLVVSIAKRYVNRGMSLQDLIQEGSLGLIRAAEKFD 250
Query: 193 ASKGFRFSTYATWWIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAPTE 372
+ KGF+FSTYATWW++QA+TRAIADHSR IRLPVH+ DT++A+RKT++ L++E+GR+PTE
Sbjct: 251 SEKGFKFSTYATWWVKQAVTRAIADHSRTIRLPVHLYDTISAIRKTTRTLNIEIGRSPTE 310
Query: 373 AEISARSNLPVAKMRFLADASQSTVSLDMPIGKKSGGDPGCATLGSFIVWSGDDP 537
EI+ + ++ V K+R + ++Q T+SL+ P+ D + L FI + P
Sbjct: 311 EEIAEKMDMSVEKLRSVLQSAQPTLSLERPL----KNDDDASQLSDFIEADQESP 361
[58][TOP]
>UniRef100_Q98RZ3 RNA-polymerase sigma factor n=1 Tax=Guillardia theta
RepID=Q98RZ3_GUITH
Length = 460
Score = 199 bits (506), Expect = 1e-49
Identities = 100/175 (57%), Positives = 133/175 (76%)
Frame = +1
Query: 13 DVAALRRQLRCGLRAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEKYD 192
DV R L RAKERMV+ANLRLVVSIAK+Y+NRG+ LQDLIQEGS+GLIR AEK+D
Sbjct: 174 DVRKFRSILHNARRAKERMVAANLRLVVSIAKRYVNRGMSLQDLIQEGSLGLIRAAEKFD 233
Query: 193 ASKGFRFSTYATWWIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAPTE 372
+ KGF+FSTYATWW++QA+TRAIADHSR IRLPVH+ DT++A+RKT++ L++E+GR+PTE
Sbjct: 234 SEKGFKFSTYATWWVKQAVTRAIADHSRTIRLPVHLYDTISAIRKTTRNLNIEIGRSPTE 293
Query: 373 AEISARSNLPVAKMRFLADASQSTVSLDMPIGKKSGGDPGCATLGSFIVWSGDDP 537
EI+ R ++ V K+R + ++Q T+SL+ P+ D + L FI + P
Sbjct: 294 EEIAKRMDMSVEKLRNVLQSAQPTLSLERPL----KNDDDTSQLSDFIEADQESP 344
[59][TOP]
>UniRef100_Q39515 Chloroplast RNA polymerase sigma subunit n=1 Tax=Cyanidium
caldarium RepID=Q39515_CYACA
Length = 591
Score = 196 bits (499), Expect = 7e-49
Identities = 101/158 (63%), Positives = 124/158 (78%)
Frame = +1
Query: 13 DVAALRRQLRCGLRAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEKYD 192
DV LR +R G +AKERMV+ANLRLVVSIAK+Y NRG+ LQDLIQEGSIGLIRG EK+D
Sbjct: 338 DVEKLREHIRDGRKAKERMVTANLRLVVSIAKRYSNRGVALQDLIQEGSIGLIRGVEKFD 397
Query: 193 ASKGFRFSTYATWWIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAPTE 372
A +GFRFSTYATWWIRQ+ITRAI+D SR IRLPVHV+DT++ +RK +K L VELGR P+E
Sbjct: 398 AERGFRFSTYATWWIRQSITRAISDSSRSIRLPVHVHDTISLIRKQTKALQVELGRPPSE 457
Query: 373 AEISARSNLPVAKMRFLADASQSTVSLDMPIGKKSGGD 486
EI + AK R + + S++ VSL+ P+ +SG D
Sbjct: 458 EEICESVGIDRAKYRLVMECSRNIVSLETPL--RSGDD 493
[60][TOP]
>UniRef100_Q8GB27 RNA polymerase sigma factor (Fragment) n=1 Tax=Anabaena planctonica
NIES-810 RepID=Q8GB27_9NOST
Length = 203
Score = 193 bits (490), Expect = 7e-48
Identities = 96/156 (61%), Positives = 122/156 (78%)
Frame = +1
Query: 70 VSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEKYDASKGFRFSTYATWWIRQAI 249
V +NLRLVVSIAKKY+NRGL QDLIQEGS+GLIR AEK+D KG++FSTYATWWIRQAI
Sbjct: 1 VQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAI 60
Query: 250 TRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAPTEAEISARSNLPVAKMRFLAD 429
TRAIAD SR IRLPVH+ +T++ ++KT+KLLS E+GR PTE EI+ R + + K+RF+A
Sbjct: 61 TRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAK 120
Query: 430 ASQSTVSLDMPIGKKSGGDPGCATLGSFIVWSGDDP 537
++QS +SL+ PIGK+ + LG FI G+ P
Sbjct: 121 SAQSPISLETPIGKEED-----SRLGDFIESEGETP 151
[61][TOP]
>UniRef100_Q84IZ9 RNA polymerase sigma factor (Fragment) n=1 Tax=Leptolyngbya sp. PCC
7375 RepID=Q84IZ9_9CYAN
Length = 203
Score = 191 bits (486), Expect = 2e-47
Identities = 96/156 (61%), Positives = 121/156 (77%)
Frame = +1
Query: 70 VSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEKYDASKGFRFSTYATWWIRQAI 249
V +NLRLVVSIAKKY+NRGL QDLIQEGS+GLIR AEK+D KG++FSTYATWWIRQAI
Sbjct: 1 VQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAI 60
Query: 250 TRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAPTEAEISARSNLPVAKMRFLAD 429
TRAIAD SR IRLPVH+ +T++ ++KT+KLLS ELGR PTE EI+ R + + K+RF+A
Sbjct: 61 TRAIADQSRTIRLPVHLYETISRIKKTTKLLSQELGRKPTEEEIATRMEMTIEKLRFIAK 120
Query: 430 ASQSTVSLDMPIGKKSGGDPGCATLGSFIVWSGDDP 537
++Q +SL+ PIGK+ + LG FI G+ P
Sbjct: 121 SAQLPISLETPIGKEED-----SRLGDFIESDGETP 151
[62][TOP]
>UniRef100_Q8GB29 RNA polymerase sigma factor (Fragment) n=1 Tax=Stanieria
cyanosphaera PCC 7437 RepID=Q8GB29_9CYAN
Length = 203
Score = 191 bits (484), Expect = 4e-47
Identities = 95/156 (60%), Positives = 121/156 (77%)
Frame = +1
Query: 70 VSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEKYDASKGFRFSTYATWWIRQAI 249
V +NLRLVVSIAKKY+NRGL QDLIQEGS+GLIR AEK+D KG++FSTYATWWIRQAI
Sbjct: 1 VQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAI 60
Query: 250 TRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAPTEAEISARSNLPVAKMRFLAD 429
TRAIAD SR IRLPVH+ +T++ ++KT+KLLS E+GR PTE EI+ R + + K+RF+A
Sbjct: 61 TRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAK 120
Query: 430 ASQSTVSLDMPIGKKSGGDPGCATLGSFIVWSGDDP 537
++Q +SL+ PIGK+ + LG FI G+ P
Sbjct: 121 SAQLPISLETPIGKEED-----SRLGDFIEADGETP 151
[63][TOP]
>UniRef100_Q84J03 RNA polymerase sigma factor (Fragment) n=1 Tax=Pseudanabaena sp.
PCC 7367 RepID=Q84J03_9CYAN
Length = 203
Score = 191 bits (484), Expect = 4e-47
Identities = 95/156 (60%), Positives = 121/156 (77%)
Frame = +1
Query: 70 VSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEKYDASKGFRFSTYATWWIRQAI 249
V +NLRLVVSIAKKY+NRGL QDLIQEGS+GLIR AEK+D KG++FSTYATWWIRQAI
Sbjct: 1 VQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAI 60
Query: 250 TRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAPTEAEISARSNLPVAKMRFLAD 429
TRAIAD SR IRLPVH+ +T++ ++KT+KLLS E+GR PTE EI+ R + + K+RF+A
Sbjct: 61 TRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAK 120
Query: 430 ASQSTVSLDMPIGKKSGGDPGCATLGSFIVWSGDDP 537
++Q +SL+ PIGK+ + LG FI G+ P
Sbjct: 121 SAQLPISLETPIGKEED-----SRLGDFIESDGETP 151
[64][TOP]
>UniRef100_Q84IZ7 RNA polymerase sigma factor (Fragment) n=1 Tax=Pseudanabaena sp.
PCC 7403 RepID=Q84IZ7_9CYAN
Length = 203
Score = 191 bits (484), Expect = 4e-47
Identities = 95/156 (60%), Positives = 121/156 (77%)
Frame = +1
Query: 70 VSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEKYDASKGFRFSTYATWWIRQAI 249
V +NLRLVVSIAKKY+NRGL QDLIQEGS+GLIR AEK+D KG++FSTYATWWIRQAI
Sbjct: 1 VQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAI 60
Query: 250 TRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAPTEAEISARSNLPVAKMRFLAD 429
TRAIAD SR IRLPVH+ +T++ ++KT+KLLS E+GR PTE EI+ R + + K+RF+A
Sbjct: 61 TRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAK 120
Query: 430 ASQSTVSLDMPIGKKSGGDPGCATLGSFIVWSGDDP 537
++Q +SL+ PIGK+ + LG FI G+ P
Sbjct: 121 SAQLPISLETPIGKEED-----SRLGDFIESDGETP 151
[65][TOP]
>UniRef100_Q8GB25 RNA polymerase sigma factor (Fragment) n=1 Tax=Fischerella major
NIES-592 RepID=Q8GB25_9CYAN
Length = 203
Score = 189 bits (480), Expect = 1e-46
Identities = 94/156 (60%), Positives = 120/156 (76%)
Frame = +1
Query: 70 VSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEKYDASKGFRFSTYATWWIRQAI 249
V +NLRLVVSIAKKY+NRGL QDLIQEGS+GLIR AEK+D KG++FSTYATWWIRQAI
Sbjct: 1 VQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAI 60
Query: 250 TRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAPTEAEISARSNLPVAKMRFLAD 429
TRAIAD SR IRLPVH+ +T++ ++KT+KLLS E+GR PTE EI+ R + + K+RF+
Sbjct: 61 TRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIVK 120
Query: 430 ASQSTVSLDMPIGKKSGGDPGCATLGSFIVWSGDDP 537
++Q +SL+ PIGK+ + LG FI G+ P
Sbjct: 121 SAQLPISLETPIGKEED-----SRLGDFIESDGETP 151
[66][TOP]
>UniRef100_Q84J04 RNA polymerase sigma factor (Fragment) n=1 Tax=Phormidium sp. IAM
M-99 RepID=Q84J04_9CYAN
Length = 203
Score = 189 bits (480), Expect = 1e-46
Identities = 94/156 (60%), Positives = 120/156 (76%)
Frame = +1
Query: 70 VSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEKYDASKGFRFSTYATWWIRQAI 249
V +N RLVVSIAKKY+NRGL QDLIQEGS+GLIR AEK+D KG++FSTYATWWIRQAI
Sbjct: 1 VQSNFRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAI 60
Query: 250 TRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAPTEAEISARSNLPVAKMRFLAD 429
TRAIAD SR IRLPVH+ +T++ ++KT+KLLS E+GR PTE EI+ R + + K+RF+A
Sbjct: 61 TRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAK 120
Query: 430 ASQSTVSLDMPIGKKSGGDPGCATLGSFIVWSGDDP 537
++Q +SL+ PIGK+ + LG FI G+ P
Sbjct: 121 SAQLPISLETPIGKEED-----SRLGDFIESDGETP 151
[67][TOP]
>UniRef100_Q84J02 RNA polymerase sigma factor (Fragment) n=1 Tax=Xenococcus sp. PCC
7307 RepID=Q84J02_9CYAN
Length = 203
Score = 189 bits (480), Expect = 1e-46
Identities = 95/156 (60%), Positives = 120/156 (76%)
Frame = +1
Query: 70 VSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEKYDASKGFRFSTYATWWIRQAI 249
V +NLRLVVSIAKKY+NRGL QDLIQEGS+GLIR AEK+D KG++FSTYATWWIRQAI
Sbjct: 1 VQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAI 60
Query: 250 TRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAPTEAEISARSNLPVAKMRFLAD 429
TRAIAD SR IRLPVH+ +T++ ++KT+KLLS E GR PTE EI+ R + + K+RF+A
Sbjct: 61 TRAIADQSRTIRLPVHLYETISRIKKTTKLLSQERGRKPTEEEIATRMEMTIEKLRFIAK 120
Query: 430 ASQSTVSLDMPIGKKSGGDPGCATLGSFIVWSGDDP 537
++Q +SL+ PIGK+ + LG FI G+ P
Sbjct: 121 SAQLPISLETPIGKEED-----SRLGDFIEADGETP 151
[68][TOP]
>UniRef100_Q84J01 RNA polymerase sigma factor (Fragment) n=1 Tax=Pleurocapsa sp. PCC
7314 RepID=Q84J01_9CYAN
Length = 203
Score = 189 bits (479), Expect = 1e-46
Identities = 95/156 (60%), Positives = 120/156 (76%)
Frame = +1
Query: 70 VSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEKYDASKGFRFSTYATWWIRQAI 249
V +NLRLVVSIAKKY+NRGL QDLIQEGS+GLIR AEK+D KG++FSTYATWWIRQAI
Sbjct: 1 VHSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAI 60
Query: 250 TRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAPTEAEISARSNLPVAKMRFLAD 429
TRAIAD SR IRLPVH+ +T++ ++KT+KLLS E GR PTE EI+ R + + K+RF+A
Sbjct: 61 TRAIADQSRTIRLPVHLYETISRIKKTTKLLSQERGRKPTEEEIATRMEMTIEKLRFIAK 120
Query: 430 ASQSTVSLDMPIGKKSGGDPGCATLGSFIVWSGDDP 537
++Q +SL+ PIGK+ + LG FI G+ P
Sbjct: 121 SAQLPISLETPIGKEED-----SRLGDFIEADGETP 151
[69][TOP]
>UniRef100_Q8GB26 RNA polymerase sigma factor (Fragment) n=1 Tax=Gloeobacter
violaceus PCC 8105 RepID=Q8GB26_GLOVI
Length = 203
Score = 186 bits (473), Expect = 7e-46
Identities = 94/156 (60%), Positives = 119/156 (76%)
Frame = +1
Query: 70 VSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEKYDASKGFRFSTYATWWIRQAI 249
V +NLRLVVSIA KY+NRGL QDLIQEGS+GLIR AEK+D KG++FSTYATWWIRQAI
Sbjct: 1 VQSNLRLVVSIALKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAI 60
Query: 250 TRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAPTEAEISARSNLPVAKMRFLAD 429
TRAIAD SR IRLPVH+ +T++ ++KT+KLLS ELGR PTE EI+ R + + K+RF+A
Sbjct: 61 TRAIADQSRTIRLPVHLYETISRIKKTTKLLSQELGRKPTEEEIATRMEMTIEKLRFIAK 120
Query: 430 ASQSTVSLDMPIGKKSGGDPGCATLGSFIVWSGDDP 537
++Q +SL+ PIGK+ + LG F G+ P
Sbjct: 121 SAQLPISLETPIGKEED-----SRLGDFSEADGETP 151
[70][TOP]
>UniRef100_Q84J08 RNA polymerase sigma factor (Fragment) n=1 Tax=Arthrospira
platensis RepID=Q84J08_SPIPL
Length = 203
Score = 185 bits (469), Expect = 2e-45
Identities = 94/156 (60%), Positives = 119/156 (76%)
Frame = +1
Query: 70 VSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEKYDASKGFRFSTYATWWIRQAI 249
V +NLRLVVSIAKKY+NRGL QDLIQEGS+GLIR AEK D KG++FSTYATWWIRQAI
Sbjct: 1 VQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKLDHEKGYKFSTYATWWIRQAI 60
Query: 250 TRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAPTEAEISARSNLPVAKMRFLAD 429
TRAIAD SR IRLPV + +T++ ++KT+KLLS E+GR PTE EI+ R + + K+RF+A
Sbjct: 61 TRAIADQSRTIRLPVLLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAK 120
Query: 430 ASQSTVSLDMPIGKKSGGDPGCATLGSFIVWSGDDP 537
++Q +SL+ PIGK+ + LG FI G+ P
Sbjct: 121 SAQLPISLETPIGKEED-----SRLGDFIESDGETP 151
[71][TOP]
>UniRef100_Q8GB28 RNA polymerase sigma factor (Fragment) n=1 Tax=Chlorogloeopsis
fritschii PCC 6912 RepID=Q8GB28_CHLFR
Length = 198
Score = 182 bits (462), Expect = 1e-44
Identities = 90/150 (60%), Positives = 116/150 (77%)
Frame = +1
Query: 88 LVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEKYDASKGFRFSTYATWWIRQAITRAIAD 267
+VVSIAKKY+NRGL QDLIQEGS+GLIR AEK+D KG++FSTYATWWIRQAITRAIAD
Sbjct: 1 MVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIAD 60
Query: 268 HSRPIRLPVHVNDTLAALRKTSKLLSVELGRAPTEAEISARSNLPVAKMRFLADASQSTV 447
SR IRLPVH+ +T++ ++KT+KLLS E+GR PTE EI+ R + + K+RF+A ++Q +
Sbjct: 61 QSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPI 120
Query: 448 SLDMPIGKKSGGDPGCATLGSFIVWSGDDP 537
SL+ PIGK+ + LG FI G+ P
Sbjct: 121 SLETPIGKEED-----SRLGDFIESDGETP 145
[72][TOP]
>UniRef100_Q84IZ6 RNA polymerase sigma factor (Fragment) n=1 Tax=Cyanobium sp. PCC
7001 RepID=Q84IZ6_9CHRO
Length = 203
Score = 178 bits (452), Expect = 2e-43
Identities = 90/156 (57%), Positives = 116/156 (74%)
Frame = +1
Query: 70 VSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEKYDASKGFRFSTYATWWIRQAI 249
V + RLVVSIAKKY+NRGL QDLIQEGS+GLIR AEK+D KG++FSTYATWWIRQAI
Sbjct: 1 VQSKFRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAI 60
Query: 250 TRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAPTEAEISARSNLPVAKMRFLAD 429
TRAIAD SR IRLPVH+ +T++ ++KT+K LS E GR PTE EI+ + + K+RF+A
Sbjct: 61 TRAIADQSRTIRLPVHLYETISRIKKTTKTLSQEFGRKPTEEEIAESMEMTIEKLRFIAK 120
Query: 430 ASQSTVSLDMPIGKKSGGDPGCATLGSFIVWSGDDP 537
++Q +SL+ PIGK+ + LG FI ++P
Sbjct: 121 SAQLPISLETPIGKEED-----SRLGDFIEADIENP 151
[73][TOP]
>UniRef100_A7NGG2 RNA polymerase sigma factor n=1 Tax=Roseiflexus castenholzii DSM
13941 RepID=A7NGG2_ROSCS
Length = 405
Score = 172 bits (436), Expect = 1e-41
Identities = 90/171 (52%), Positives = 119/171 (69%)
Frame = +1
Query: 4 TDMDVAALRRQLRCGLRAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAE 183
T ++ L R ++ G A+ER++ ANLRLVVSIAKKYL RG+ L DLIQEG+IGL+R E
Sbjct: 151 TPVERLQLHRWVQEGQAARERLIQANLRLVVSIAKKYLGRGMSLLDLIQEGNIGLMRATE 210
Query: 184 KYDASKGFRFSTYATWWIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRA 363
K+D KG++FSTYATWWIRQAITR IAD SR IRLPVHV +T+ + +TS + GR
Sbjct: 211 KFDYRKGYKFSTYATWWIRQAITRVIADQSRTIRLPVHVGETINRVMRTSNRIQQTTGRD 270
Query: 364 PTEAEISARSNLPVAKMRFLADASQSTVSLDMPIGKKSGGDPGCATLGSFI 516
PT EI+ +PV K+R + +A++ T+SL+ PIG + G + L FI
Sbjct: 271 PTPDEIALELGIPVEKVRRVLEAARQTISLETPIGPE-----GDSVLADFI 316
[74][TOP]
>UniRef100_B9L102 RNA polymerase sigma factor n=1 Tax=Thermomicrobium roseum DSM 5159
RepID=B9L102_THERP
Length = 509
Score = 172 bits (435), Expect = 2e-41
Identities = 86/167 (51%), Positives = 121/167 (72%)
Frame = +1
Query: 16 VAALRRQLRCGLRAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEKYDA 195
+A +R R G A+ ++ ANLRLVVSIAK+Y RGL L DLIQEG++GL+R +K+
Sbjct: 259 IAHWQRLRRDGEAARRKLTEANLRLVVSIAKRYTGRGLTLLDLIQEGNLGLMRAVDKFQT 318
Query: 196 SKGFRFSTYATWWIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAPTEA 375
KGF+FSTYATWWIRQAITRA+ADH+R IRLPVH+ +TL + + ++ L+ ELGR PT +
Sbjct: 319 HKGFKFSTYATWWIRQAITRALADHARTIRLPVHLVETLNRVSRVARQLTQELGREPTTS 378
Query: 376 EISARSNLPVAKMRFLADASQSTVSLDMPIGKKSGGDPGCATLGSFI 516
E++A N+P+ ++R L A+Q VSL+ P+G++ +TLG F+
Sbjct: 379 ELAAAVNMPLDRLRELLQAAQDPVSLEAPVGQEEE-----STLGDFL 420
[75][TOP]
>UniRef100_C0FXF0 RNA polymerase sigma factor n=1 Tax=Roseburia inulinivorans DSM
16841 RepID=C0FXF0_9FIRM
Length = 426
Score = 172 bits (435), Expect = 2e-41
Identities = 88/168 (52%), Positives = 120/168 (71%)
Frame = +1
Query: 13 DVAALRRQLRCGLRAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEKYD 192
++ L++ L G AK+R+ ANLRLVVSIAK+Y+ RG+L DLIQEG++GLI+ EK+D
Sbjct: 175 EIKNLQKDLDAGDEAKKRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFD 234
Query: 193 ASKGFRFSTYATWWIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAPTE 372
KG++FSTYATWWIRQAITRAIAD +R IR+PVH+ +T+ L + S+ L ELGR P+
Sbjct: 235 YRKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQELGREPSP 294
Query: 373 AEISARSNLPVAKMRFLADASQSTVSLDMPIGKKSGGDPGCATLGSFI 516
EI+A N+PV ++R + SQ VSL+ PIG++ + LG FI
Sbjct: 295 EEIAAEMNMPVERVREILKISQEPVSLETPIGEEED-----SHLGDFI 337
[76][TOP]
>UniRef100_A9B4B0 RNA polymerase sigma factor n=1 Tax=Herpetosiphon aurantiacus ATCC
23779 RepID=A9B4B0_HERA2
Length = 400
Score = 171 bits (433), Expect = 3e-41
Identities = 83/164 (50%), Positives = 122/164 (74%)
Frame = +1
Query: 1 VTDMDVAALRRQLRCGLRAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGA 180
++D++ ALRR++ G +A+E + +ANLRLVVS+AKKY+ RGL L DLIQEG++GLIR
Sbjct: 145 LSDVERLALRRRIDRGEQAREHLTTANLRLVVSVAKKYIGRGLSLLDLIQEGNVGLIRAV 204
Query: 181 EKYDASKGFRFSTYATWWIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGR 360
EK++ +KGF+FSTYATWWIRQAITRAIAD +R IR+PVH+ +T+ + +T++ L+ E GR
Sbjct: 205 EKFNYTKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINRMMRTARRLTQENGR 264
Query: 361 APTEAEISARSNLPVAKMRFLADASQSTVSLDMPIGKKSGGDPG 492
P++ E++ +L V K+R + S VSL+ P+G++ G
Sbjct: 265 EPSDEELAQALDLTVEKVRSIRKTSMEPVSLETPVGQEEDSQLG 308
[77][TOP]
>UniRef100_A5GQ42 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. RCC307
RepID=A5GQ42_SYNR3
Length = 324
Score = 171 bits (432), Expect = 4e-41
Identities = 86/150 (57%), Positives = 112/150 (74%)
Frame = +1
Query: 19 AALRRQLRCGLRAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEKYDAS 198
A LRR+L G RAKERMV+ANLRLVVS+AKKY R + L DLIQEG+IGL+RG EK+D +
Sbjct: 77 AVLRRRLINGRRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPT 136
Query: 199 KGFRFSTYATWWIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAPTEAE 378
+G++FSTYA WWIRQ ITRAIA+ SR IRLP+H+ +TL L+K + LS ELGR PT E
Sbjct: 137 RGYKFSTYAYWWIRQGITRAIAEKSRTIRLPIHITETLNKLKKGQRELSQELGRTPTVGE 196
Query: 379 ISARSNLPVAKMRFLADASQSTVSLDMPIG 468
++ LP +++ L ++ VSL+M +G
Sbjct: 197 LAEFLELPEPEVKDLLSRARQPVSLEMKVG 226
[78][TOP]
>UniRef100_C4ZEX0 RNA polymerase sigma factor n=1 Tax=Eubacterium rectale ATCC 33656
RepID=C4ZEX0_EUBR3
Length = 434
Score = 170 bits (431), Expect = 5e-41
Identities = 87/168 (51%), Positives = 119/168 (70%)
Frame = +1
Query: 13 DVAALRRQLRCGLRAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEKYD 192
++ L+R + G AK+R+ ANLRLVVSIAK+Y+ RG+L DLIQEG++GLI+ EK+D
Sbjct: 183 EIKTLQRDVDKGADAKKRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFD 242
Query: 193 ASKGFRFSTYATWWIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAPTE 372
KG++FSTYATWWIRQAITRAIAD +R IR+PVH+ +T+ L + S+ L ELGR P+
Sbjct: 243 YKKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQELGREPSP 302
Query: 373 AEISARSNLPVAKMRFLADASQSTVSLDMPIGKKSGGDPGCATLGSFI 516
EI+ N+PV ++R + SQ VSL+ PIG++ + LG FI
Sbjct: 303 EEIAKEMNMPVERVREILKISQEPVSLETPIGEEED-----SHLGDFI 345
[79][TOP]
>UniRef100_A6NVX3 RNA polymerase sigma factor n=1 Tax=Bacteroides capillosus ATCC
29799 RepID=A6NVX3_9BACE
Length = 441
Score = 170 bits (430), Expect = 7e-41
Identities = 87/172 (50%), Positives = 122/172 (70%)
Frame = +1
Query: 1 VTDMDVAALRRQLRCGLRAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGA 180
+T + AL++ +R G AK+R+ ANLRLVVSIAK+Y+ RG+L DLIQEG++GLI+
Sbjct: 186 LTPEEEKALKKDIRRGEAAKQRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAV 245
Query: 181 EKYDASKGFRFSTYATWWIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGR 360
EK+D +KG++FSTYATWWIRQAITRAIAD +R IR+PVH+ +T+ + + S+ L ELG
Sbjct: 246 EKFDYTKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKVIRVSRQLLQELGH 305
Query: 361 APTEAEISARSNLPVAKMRFLADASQSTVSLDMPIGKKSGGDPGCATLGSFI 516
P+ EI+ N+PV K+R + +Q VSL+ PIG++ + LG FI
Sbjct: 306 DPSPEEIAEEMNMPVDKVREILKIAQEPVSLETPIGEEED-----SHLGDFI 352
[80][TOP]
>UniRef100_Q0IBE2 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. CC9311
RepID=Q0IBE2_SYNS3
Length = 318
Score = 169 bits (429), Expect = 9e-41
Identities = 84/153 (54%), Positives = 114/153 (74%)
Frame = +1
Query: 10 MDVAALRRQLRCGLRAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEKY 189
M A L+R+L+ G RAKERMV+ANLRLVVS+AKKY R + L DLIQEG+IGL+RG EK+
Sbjct: 68 MSAAQLKRKLQAGRRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKF 127
Query: 190 DASKGFRFSTYATWWIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAPT 369
D ++G++FSTYA WWIRQ ITRAIA+ SR IRLP+H+ + L L+K + LS ELGR P+
Sbjct: 128 DPTRGYKFSTYAYWWIRQGITRAIAEKSRTIRLPIHITEMLNKLKKGQRELSQELGRTPS 187
Query: 370 EAEISARSNLPVAKMRFLADASQSTVSLDMPIG 468
E+++ LP +++ L ++ VSL+M +G
Sbjct: 188 VTELASFVELPEEEVKDLMCRARQPVSLEMKVG 220
[81][TOP]
>UniRef100_C0WBT2 RNA polymerase sigma factor n=1 Tax=Acidaminococcus sp. D21
RepID=C0WBT2_9FIRM
Length = 582
Score = 169 bits (429), Expect = 9e-41
Identities = 87/164 (53%), Positives = 117/164 (71%)
Frame = +1
Query: 25 LRRQLRCGLRAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEKYDASKG 204
L R CG +AK+ + ANLRLVVSIAK+Y+ RG+L DLIQEG++GLI+ EK+D +KG
Sbjct: 334 LHRAAMCGEKAKKALSEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDYNKG 393
Query: 205 FRFSTYATWWIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAPTEAEIS 384
F+FSTYATWWIRQAITRAIAD +R IR+PVH+ +T+ L + S+ L ELGR PT EI+
Sbjct: 394 FKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVRVSRQLLQELGREPTPEEIA 453
Query: 385 ARSNLPVAKMRFLADASQSTVSLDMPIGKKSGGDPGCATLGSFI 516
++PV ++R + +Q VSL+ PIG++ + LG FI
Sbjct: 454 QEMDVPVERVREIQKIAQEPVSLETPIGEEED-----SHLGDFI 492
[82][TOP]
>UniRef100_Q9ZTL1 RNA polymerase sigma factor n=1 Tax=Cyanidium caldarium
RepID=Q9ZTL1_CYACA
Length = 589
Score = 169 bits (429), Expect = 9e-41
Identities = 88/171 (51%), Positives = 120/171 (70%)
Frame = +1
Query: 4 TDMDVAALRRQLRCGLRAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAE 183
T+M V+ LR +L G RAK RMV+ANLRLV+ AK++ NRG+ QDL+QEGSIGLIRG E
Sbjct: 314 TNMSVSELRGKLIKGRRAKNRMVAANLRLVICFAKRFRNRGVAFQDLVQEGSIGLIRGVE 373
Query: 184 KYDASKGFRFSTYATWWIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRA 363
KYDA++GFRFSTYA+WWIRQ I +A+ + S+ RLPVHVN+ + +R+ S L LGR
Sbjct: 374 KYDANRGFRFSTYASWWIRQGIHKALLECSKMFRLPVHVNEMIKEIRRCSYELMNILGRE 433
Query: 364 PTEAEISARSNLPVAKMRFLADASQSTVSLDMPIGKKSGGDPGCATLGSFI 516
PT+ EI+ + +P K+ FL +Q+ +SL+MP+ + S TLG +
Sbjct: 434 PTKLEIAMKVGMPEEKVIFLLQRAQTALSLEMPL-RGSDSSLESRTLGDVV 483
[83][TOP]
>UniRef100_A5V244 RNA polymerase sigma factor n=1 Tax=Roseiflexus sp. RS-1
RepID=A5V244_ROSS1
Length = 401
Score = 169 bits (428), Expect = 1e-40
Identities = 88/164 (53%), Positives = 114/164 (69%)
Frame = +1
Query: 25 LRRQLRCGLRAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEKYDASKG 204
L R ++ G A+ER++ ANLRLVVSIAKKYL RG+ L DLIQEG+IGL+R EK+D KG
Sbjct: 154 LHRWVQEGQAARERLIQANLRLVVSIAKKYLGRGMSLLDLIQEGNIGLMRATEKFDYRKG 213
Query: 205 FRFSTYATWWIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAPTEAEIS 384
++FSTYATWWIRQAITR IAD SR IRLPVHV +T+ + + S + GR PT EI+
Sbjct: 214 YKFSTYATWWIRQAITRVIADQSRTIRLPVHVGETINRVMRASNRIQQTTGRDPTPDEIA 273
Query: 385 ARSNLPVAKMRFLADASQSTVSLDMPIGKKSGGDPGCATLGSFI 516
+PV K+R + +A++ T+SL+ PIG + G L FI
Sbjct: 274 LELGIPVEKVRRVLEAARQTISLETPIGTE-----GDTVLADFI 312
[84][TOP]
>UniRef100_B0G307 RNA polymerase sigma factor n=1 Tax=Dorea formicigenerans ATCC
27755 RepID=B0G307_9FIRM
Length = 382
Score = 169 bits (427), Expect = 2e-40
Identities = 89/170 (52%), Positives = 118/170 (69%)
Frame = +1
Query: 7 DMDVAALRRQLRCGLRAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEK 186
D +V +R AK+R+ ANLRLVVSIAK+Y+ RG+L DLIQEG++GLI+ EK
Sbjct: 129 DEEVELAKRMAEGDEDAKKRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEK 188
Query: 187 YDASKGFRFSTYATWWIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAP 366
+D KGF+FSTYATWWIRQAITRAIAD +R IR+PVH+ +T+ L + S+ L ELGR P
Sbjct: 189 FDYHKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQELGREP 248
Query: 367 TEAEISARSNLPVAKMRFLADASQSTVSLDMPIGKKSGGDPGCATLGSFI 516
T EI+A ++PV ++R + SQ VSL+ PIG++ + LG FI
Sbjct: 249 TPEEIAAELDMPVERVREILKISQEPVSLETPIGEEED-----SHLGDFI 293
[85][TOP]
>UniRef100_B1WQH6 RNA polymerase sigma factor n=1 Tax=Cyanothece sp. ATCC 51142
RepID=B1WQH6_CYAA5
Length = 297
Score = 168 bits (426), Expect = 2e-40
Identities = 83/140 (59%), Positives = 108/140 (77%)
Frame = +1
Query: 46 GLRAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEKYDASKGFRFSTYA 225
G RA+++M+ ANLRLVVSIAKKYLN GL L DLIQEGS+GLIRG EK+D S+G++FSTYA
Sbjct: 58 GQRARDKMIQANLRLVVSIAKKYLNSGLSLLDLIQEGSLGLIRGVEKFDPSRGYKFSTYA 117
Query: 226 TWWIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAPTEAEISARSNLPV 405
WWIRQ ITRAIA+ SR IRLP+H+N+ L RK+ + L+++LGR PT+ EI+ ++ V
Sbjct: 118 YWWIRQGITRAIAEQSRTIRLPIHINENLNKYRKSIRELTLKLGRKPTQQEIAENMDISV 177
Query: 406 AKMRFLADASQSTVSLDMPI 465
K+RFL A+ T S + I
Sbjct: 178 DKLRFLQQAAFKTKSRSLNI 197
[86][TOP]
>UniRef100_Q8GIA9 RNA polymerase sigma factor (Fragment) n=1 Tax=Nodularia spumigena
PCC 73104 RepID=Q8GIA9_NODSP
Length = 188
Score = 168 bits (426), Expect = 2e-40
Identities = 83/141 (58%), Positives = 107/141 (75%)
Frame = +1
Query: 115 LNRGLLLQDLIQEGSIGLIRGAEKYDASKGFRFSTYATWWIRQAITRAIADHSRPIRLPV 294
+NRGL QDLIQEGS+GLIR AEK+D KG+RFSTYATWWIRQAITRAIAD SR IRLPV
Sbjct: 1 MNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYRFSTYATWWIRQAITRAIADQSRTIRLPV 60
Query: 295 HVNDTLAALRKTSKLLSVELGRAPTEAEISARSNLPVAKMRFLADASQSTVSLDMPIGKK 474
H+ +T++ ++KT+KLLS E+GR PTE EI+ R + + K+RF+A ++Q +SL+ PIGK+
Sbjct: 61 HLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKE 120
Query: 475 SGGDPGCATLGSFIVWSGDDP 537
+ LG FI G+ P
Sbjct: 121 ED-----SRLGDFIESDGETP 136
[87][TOP]
>UniRef100_C7GGM6 RNA polymerase sigma factor RpoD n=1 Tax=Roseburia intestinalis
L1-82 RepID=C7GGM6_9FIRM
Length = 397
Score = 168 bits (426), Expect = 2e-40
Identities = 86/154 (55%), Positives = 113/154 (73%)
Frame = +1
Query: 55 AKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEKYDASKGFRFSTYATWW 234
AK+R+ ANLRLVVSIAK+Y+ RG+L DLIQEG++GLI+ EK+D KG++FSTYATWW
Sbjct: 160 AKKRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDYRKGYKFSTYATWW 219
Query: 235 IRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAPTEAEISARSNLPVAKM 414
IRQAITRAIAD +R IR+PVH+ +T+ L + S+ L ELGR PT EI+A N+PV ++
Sbjct: 220 IRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQELGREPTPEEIAAEMNMPVERV 279
Query: 415 RFLADASQSTVSLDMPIGKKSGGDPGCATLGSFI 516
R + SQ VSL+ PIG++ + LG FI
Sbjct: 280 REILKISQEPVSLETPIGEEED-----SHLGDFI 308
[88][TOP]
>UniRef100_C2AAT6 RNA polymerase sigma factor n=1 Tax=Thermomonospora curvata DSM
43183 RepID=C2AAT6_THECU
Length = 357
Score = 168 bits (426), Expect = 2e-40
Identities = 87/159 (54%), Positives = 113/159 (71%)
Frame = +1
Query: 40 RCGLRAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEKYDASKGFRFST 219
R G RAK+R++ ANLRLVVSIAK+Y+ RG+L DLIQEG++GLIR EK+D +KGF+FST
Sbjct: 116 REGARAKQRLIEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIRAVEKFDYTKGFKFST 175
Query: 220 YATWWIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAPTEAEISARSNL 399
YATWWIRQAITRAIAD +R IR+PVH+ +T+ L + + L +LGR PT AEI A L
Sbjct: 176 YATWWIRQAITRAIADQARTIRIPVHMVETINKLVRVQRQLHQDLGREPTPAEIGAEMGL 235
Query: 400 PVAKMRFLADASQSTVSLDMPIGKKSGGDPGCATLGSFI 516
P ++ + +Q VSL PIG++ + LG FI
Sbjct: 236 PAERVVEIQRIAQEPVSLQSPIGEED------SDLGDFI 268
[89][TOP]
>UniRef100_C0C397 RNA polymerase sigma factor n=1 Tax=Clostridium hylemonae DSM 15053
RepID=C0C397_9CLOT
Length = 370
Score = 168 bits (426), Expect = 2e-40
Identities = 89/170 (52%), Positives = 118/170 (69%)
Frame = +1
Query: 7 DMDVAALRRQLRCGLRAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEK 186
D +V +R AK+R+ ANLRLVVSIAK+Y+ RG+L DLIQEG++GLI+ EK
Sbjct: 117 DEEVDLAKRMADGDEEAKKRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEK 176
Query: 187 YDASKGFRFSTYATWWIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAP 366
+D KGF+FSTYATWWIRQAITRAIAD +R IR+PVH+ +T+ L + S+ L ELGR P
Sbjct: 177 FDYHKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQELGREP 236
Query: 367 TEAEISARSNLPVAKMRFLADASQSTVSLDMPIGKKSGGDPGCATLGSFI 516
T EI+A ++PV ++R + SQ VSL+ PIG++ + LG FI
Sbjct: 237 TPEEIAAELDMPVERVREILKISQEPVSLETPIGEEED-----SHLGDFI 281
[90][TOP]
>UniRef100_B5INB3 RNA polymerase sigma factor n=1 Tax=Cyanobium sp. PCC 7001
RepID=B5INB3_9CHRO
Length = 335
Score = 168 bits (426), Expect = 2e-40
Identities = 83/150 (55%), Positives = 112/150 (74%)
Frame = +1
Query: 19 AALRRQLRCGLRAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEKYDAS 198
A L+++L+ G RAKERMV+ANLRLVVS+AKKY R + L DLIQEG+IGL+RG EK+D +
Sbjct: 83 AVLKKRLQAGRRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPT 142
Query: 199 KGFRFSTYATWWIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAPTEAE 378
+G++FSTYA WWIRQ ITRAIA+ SR IRLP+H+ +TL L+K + LS ELGR PT E
Sbjct: 143 RGYKFSTYAYWWIRQGITRAIAEKSRTIRLPIHITETLNKLKKGQRELSQELGRTPTVTE 202
Query: 379 ISARSNLPVAKMRFLADASQSTVSLDMPIG 468
++ LP +++ L ++ VSL+ +G
Sbjct: 203 LAGYVELPEEEVKDLLCRARQPVSLETKVG 232
[91][TOP]
>UniRef100_B5IJI5 RNA polymerase sigma factor n=1 Tax=Cyanobium sp. PCC 7001
RepID=B5IJI5_9CHRO
Length = 319
Score = 168 bits (426), Expect = 2e-40
Identities = 83/150 (55%), Positives = 112/150 (74%)
Frame = +1
Query: 19 AALRRQLRCGLRAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEKYDAS 198
A L+++L+ G RAKERMV+ANLRLVVS+AKKY R + L DLIQEG+IGL+RG EK+D +
Sbjct: 67 AVLKKRLQAGRRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPT 126
Query: 199 KGFRFSTYATWWIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAPTEAE 378
+G++FSTYA WWIRQ ITRAIA+ SR IRLP+H+ +TL L+K + LS ELGR PT E
Sbjct: 127 RGYKFSTYAYWWIRQGITRAIAEKSRTIRLPIHITETLNKLKKGQRELSQELGRTPTVTE 186
Query: 379 ISARSNLPVAKMRFLADASQSTVSLDMPIG 468
++ LP +++ L ++ VSL+ +G
Sbjct: 187 LAGYVELPEEEVKDLLCRARQPVSLETKVG 216
[92][TOP]
>UniRef100_A8DJM2 RNA polymerase sigma factor n=1 Tax=Candidatus Chloracidobacterium
thermophilum RepID=A8DJM2_9BACT
Length = 549
Score = 168 bits (426), Expect = 2e-40
Identities = 86/157 (54%), Positives = 115/157 (73%), Gaps = 2/157 (1%)
Frame = +1
Query: 52 RAKERMVSANLRLVVSIAKKYLNR--GLLLQDLIQEGSIGLIRGAEKYDASKGFRFSTYA 225
+A+ M+ ANLRLVVSIAK Y+NR GL DLIQEG+IGL+R EK+D +G++FSTYA
Sbjct: 305 KARREMIEANLRLVVSIAKNYINRSRGLQFSDLIQEGNIGLMRAVEKFDYRRGYKFSTYA 364
Query: 226 TWWIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAPTEAEISARSNLPV 405
TWWIRQA+TRAIAD R IR+PVH+ +T+ + +T++L+ ELGR PT E++ R++LPV
Sbjct: 365 TWWIRQAVTRAIADQGRTIRVPVHMVETINKIVRTARLMVQELGREPTHEELAQRTDLPV 424
Query: 406 AKMRFLADASQSTVSLDMPIGKKSGGDPGCATLGSFI 516
AK+R +Q +SL+ PI GD G + LGSFI
Sbjct: 425 AKVRQALKIAQEPISLETPI-----GDDGESNLGSFI 456
[93][TOP]
>UniRef100_A4E6U1 RNA polymerase sigma factor n=1 Tax=Collinsella aerofaciens ATCC
25986 RepID=A4E6U1_9ACTN
Length = 454
Score = 168 bits (426), Expect = 2e-40
Identities = 88/172 (51%), Positives = 118/172 (68%)
Frame = +1
Query: 1 VTDMDVAALRRQLRCGLRAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGA 180
+T ++ L R GL AK+ ++SANLRLVVSIAK+Y+ RG+L DLIQEG++GLIR
Sbjct: 198 LTRAEIRRLTRIENVGLEAKQALISANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIRAV 257
Query: 181 EKYDASKGFRFSTYATWWIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGR 360
EK+D KGF+FSTYATWWIRQAITRAIAD +R IR+PVH+ +T+ L + + L +LGR
Sbjct: 258 EKFDYQKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVRVQRQLLQDLGR 317
Query: 361 APTEAEISARSNLPVAKMRFLADASQSTVSLDMPIGKKSGGDPGCATLGSFI 516
PT EI A ++ ++R + SQ VSL+ PIG++ + LG FI
Sbjct: 318 DPTPEEIGAEMDMSADRVREIQKISQEPVSLETPIGEEED-----SQLGDFI 364
[94][TOP]
>UniRef100_A3IVN8 RNA polymerase sigma factor n=1 Tax=Cyanothece sp. CCY0110
RepID=A3IVN8_9CHRO
Length = 297
Score = 168 bits (426), Expect = 2e-40
Identities = 83/140 (59%), Positives = 108/140 (77%)
Frame = +1
Query: 46 GLRAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEKYDASKGFRFSTYA 225
G RA+++M+ ANLRLVVSIAKKYLN GL L DLIQEGS+GLIRG EK+D S+G++FSTYA
Sbjct: 58 GQRARDKMIQANLRLVVSIAKKYLNSGLSLLDLIQEGSLGLIRGVEKFDPSRGYKFSTYA 117
Query: 226 TWWIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAPTEAEISARSNLPV 405
WWIRQ ITRAIA+ SR IRLP+H+N+ L RK+ + L+++LGR PT+ EI+ ++ V
Sbjct: 118 YWWIRQGITRAIAEQSRTIRLPIHINENLNKYRKSIRELTLKLGRKPTQQEIAENMDITV 177
Query: 406 AKMRFLADASQSTVSLDMPI 465
K+RFL A+ T S + I
Sbjct: 178 DKLRFLQQAAFKTKSRSLNI 197
[95][TOP]
>UniRef100_A9RTR6 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens
RepID=A9RTR6_PHYPA
Length = 583
Score = 168 bits (426), Expect = 2e-40
Identities = 80/154 (51%), Positives = 112/154 (72%)
Frame = +1
Query: 10 MDVAALRRQLRCGLRAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEKY 189
+D +L +++ G AK+++V++NLRLVVSI K Y RG+ L DLIQEGS+GLIRGAEK+
Sbjct: 328 LDQTSLELRVKEGRSAKDKLVNSNLRLVVSIVKNYQGRGMTLPDLIQEGSLGLIRGAEKF 387
Query: 190 DASKGFRFSTYATWWIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAPT 369
D G++FSTYATWWIRQA+TRAIAD SR IRLPVH+ + ++ + K +S ELGR P
Sbjct: 388 DPEMGYKFSTYATWWIRQAVTRAIADQSRIIRLPVHIYEVISRINKAKMTISQELGRQPR 447
Query: 370 EAEISARSNLPVAKMRFLADASQSTVSLDMPIGK 471
+ E++A + V K+ F+ +++ S+D PIGK
Sbjct: 448 DEEVAAMVGMSVEKLLFIVKSARPPTSMDRPIGK 481
[96][TOP]
>UniRef100_Q0IDY7 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. CC9311
RepID=Q0IDY7_SYNS3
Length = 335
Score = 168 bits (425), Expect = 3e-40
Identities = 83/153 (54%), Positives = 114/153 (74%)
Frame = +1
Query: 10 MDVAALRRQLRCGLRAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEKY 189
+ A L+R+L+ G RAKERMV+ANLRLVVS+AKKY R + L DLIQEG+IGL+RG EK+
Sbjct: 85 VSAAQLKRKLQAGRRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKF 144
Query: 190 DASKGFRFSTYATWWIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAPT 369
D ++G++FSTYA WWIRQ ITRAIA+ SR IRLP+H+ + L L+K + LS ELGR P+
Sbjct: 145 DPTRGYKFSTYAYWWIRQGITRAIAEKSRTIRLPIHITEMLNKLKKGQRELSQELGRTPS 204
Query: 370 EAEISARSNLPVAKMRFLADASQSTVSLDMPIG 468
E+++ LP +++ L ++ VSL+M +G
Sbjct: 205 VTELASFVELPEEEVKDLMCRARQPVSLEMKVG 237
[97][TOP]
>UniRef100_C4F852 RNA polymerase sigma factor n=1 Tax=Collinsella intestinalis DSM
13280 RepID=C4F852_9ACTN
Length = 448
Score = 167 bits (424), Expect = 3e-40
Identities = 88/172 (51%), Positives = 119/172 (69%)
Frame = +1
Query: 1 VTDMDVAALRRQLRCGLRAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGA 180
+T ++ L R + GL AK+ ++SANLRLVVSIAK+Y+ RG+L DLIQEG++GLIR
Sbjct: 191 LTRAEMRRLMRVEQVGLDAKQALISANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIRAV 250
Query: 181 EKYDASKGFRFSTYATWWIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGR 360
EK+D KGF+FSTYATWWIRQAITRAIAD +R IR+PVH+ +T+ L + + L +LGR
Sbjct: 251 EKFDYEKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVRVQRQLLQDLGR 310
Query: 361 APTEAEISARSNLPVAKMRFLADASQSTVSLDMPIGKKSGGDPGCATLGSFI 516
PT EI A ++ ++R + SQ VSL+ PIG++ + LG FI
Sbjct: 311 DPTPEEIGAEMDMSADRVREIQKISQEPVSLETPIGEEED-----SQLGDFI 357
[98][TOP]
>UniRef100_B6GCM9 RNA polymerase sigma factor n=1 Tax=Collinsella stercoris DSM 13279
RepID=B6GCM9_9ACTN
Length = 445
Score = 167 bits (424), Expect = 3e-40
Identities = 88/172 (51%), Positives = 119/172 (69%)
Frame = +1
Query: 1 VTDMDVAALRRQLRCGLRAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGA 180
+T ++ L R + GL AK+ ++SANLRLVVSIAK+Y+ RG+L DLIQEG++GLIR
Sbjct: 188 LTRAEMRRLMRVEQVGLDAKQALISANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIRAV 247
Query: 181 EKYDASKGFRFSTYATWWIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGR 360
EK+D KGF+FSTYATWWIRQAITRAIAD +R IR+PVH+ +T+ L + + L +LGR
Sbjct: 248 EKFDYEKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVRVQRQLLQDLGR 307
Query: 361 APTEAEISARSNLPVAKMRFLADASQSTVSLDMPIGKKSGGDPGCATLGSFI 516
PT EI A ++ ++R + SQ VSL+ PIG++ + LG FI
Sbjct: 308 DPTPEEIGAEMDMSADRVREIQKISQEPVSLETPIGEEED-----SQLGDFI 354
[99][TOP]
>UniRef100_B0NBC7 RNA polymerase sigma factor n=1 Tax=Clostridium scindens ATCC 35704
RepID=B0NBC7_EUBSP
Length = 371
Score = 167 bits (424), Expect = 3e-40
Identities = 86/154 (55%), Positives = 114/154 (74%)
Frame = +1
Query: 55 AKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEKYDASKGFRFSTYATWW 234
AK+R+ ANLRLVVSIAK+Y+ RG+L DLIQEG++GLI+ EK+D KGF+FSTYATWW
Sbjct: 134 AKKRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDYHKGFKFSTYATWW 193
Query: 235 IRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAPTEAEISARSNLPVAKM 414
IRQAITRAIAD +R IR+PVH+ +T+ L + S+ L ELGR PT EI+A+ ++PV ++
Sbjct: 194 IRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQELGREPTPEEIAAQLDMPVERV 253
Query: 415 RFLADASQSTVSLDMPIGKKSGGDPGCATLGSFI 516
R + SQ VSL+ PIG++ + LG FI
Sbjct: 254 REILKISQEPVSLETPIGEEED-----SHLGDFI 282
[100][TOP]
>UniRef100_A3Z7W8 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. RS9917
RepID=A3Z7W8_9SYNE
Length = 321
Score = 167 bits (424), Expect = 3e-40
Identities = 83/148 (56%), Positives = 111/148 (75%)
Frame = +1
Query: 25 LRRQLRCGLRAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEKYDASKG 204
L+R+L+ G RAKERMV+ANLRLVVS+AKKY R + L DLIQEG+IGL+RG EK+D ++G
Sbjct: 76 LKRKLQAGRRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRG 135
Query: 205 FRFSTYATWWIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAPTEAEIS 384
++FSTYA WWIRQ ITRAIA+ SR IRLP+H+ + L L+K + LS ELGR PT E++
Sbjct: 136 YKFSTYAYWWIRQGITRAIAEKSRTIRLPIHITEMLNKLKKGQRELSQELGRTPTVTELA 195
Query: 385 ARSNLPVAKMRFLADASQSTVSLDMPIG 468
LP +++ L ++ VSL+M +G
Sbjct: 196 GFVELPEEEVKDLMCRARQPVSLEMKVG 223
[101][TOP]
>UniRef100_A3Z449 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. RS9917
RepID=A3Z449_9SYNE
Length = 309
Score = 167 bits (424), Expect = 3e-40
Identities = 83/148 (56%), Positives = 111/148 (75%)
Frame = +1
Query: 25 LRRQLRCGLRAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEKYDASKG 204
L+R+L+ G RAKERMV+ANLRLVVS+AKKY R + L DLIQEG+IGL+RG EK+D ++G
Sbjct: 64 LKRKLQAGRRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRG 123
Query: 205 FRFSTYATWWIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAPTEAEIS 384
++FSTYA WWIRQ ITRAIA+ SR IRLP+H+ + L L+K + LS ELGR PT E++
Sbjct: 124 YKFSTYAYWWIRQGITRAIAEKSRTIRLPIHITEMLNKLKKGQRELSQELGRTPTVTELA 183
Query: 385 ARSNLPVAKMRFLADASQSTVSLDMPIG 468
LP +++ L ++ VSL+M +G
Sbjct: 184 GFVELPEEEVKDLMCRARQPVSLEMKVG 211
[102][TOP]
>UniRef100_A3Z1L6 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. WH 5701
RepID=A3Z1L6_9SYNE
Length = 330
Score = 167 bits (424), Expect = 3e-40
Identities = 84/150 (56%), Positives = 112/150 (74%)
Frame = +1
Query: 19 AALRRQLRCGLRAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEKYDAS 198
A L+R+L G RAKERMV+ANLRLVVS+AKKY R + L DLIQEG+IGL+RG EK+D +
Sbjct: 83 ALLKRKLSSGRRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPT 142
Query: 199 KGFRFSTYATWWIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAPTEAE 378
+G++FSTYA WWIRQ ITRAIA+ SR IRLP+H+ +TL L+K + LS ELGR PT +E
Sbjct: 143 RGYKFSTYAYWWIRQGITRAIAEKSRTIRLPIHITETLNKLKKGQRELSQELGRTPTLSE 202
Query: 379 ISARSNLPVAKMRFLADASQSTVSLDMPIG 468
++ LP +++ L ++ VSL+ +G
Sbjct: 203 LAVCVELPEEEVKDLLCRARQPVSLETKVG 232
[103][TOP]
>UniRef100_A3YWT8 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. WH 5701
RepID=A3YWT8_9SYNE
Length = 349
Score = 167 bits (424), Expect = 3e-40
Identities = 84/150 (56%), Positives = 112/150 (74%)
Frame = +1
Query: 19 AALRRQLRCGLRAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEKYDAS 198
A L+R+L G RAKERMV+ANLRLVVS+AKKY R + L DLIQEG+IGL+RG EK+D +
Sbjct: 99 ALLKRKLSSGRRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPT 158
Query: 199 KGFRFSTYATWWIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAPTEAE 378
+G++FSTYA WWIRQ ITRAIA+ SR IRLP+H+ +TL L+K + LS ELGR PT +E
Sbjct: 159 RGYKFSTYAYWWIRQGITRAIAEKSRTIRLPIHITETLNKLKKGQRELSQELGRTPTLSE 218
Query: 379 ISARSNLPVAKMRFLADASQSTVSLDMPIG 468
++ LP +++ L ++ VSL+ +G
Sbjct: 219 LAVCVELPEEEVKDLLCRARQPVSLETKVG 248
[104][TOP]
>UniRef100_Q02AX1 RNA polymerase sigma factor n=1 Tax=Candidatus Solibacter usitatus
Ellin6076 RepID=Q02AX1_SOLUE
Length = 518
Score = 167 bits (423), Expect = 4e-40
Identities = 81/140 (57%), Positives = 109/140 (77%)
Frame = +1
Query: 52 RAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEKYDASKGFRFSTYATW 231
RAK+ +V ANLRLVVS+AKKY+NRGL L DLIQEG+IGL+R A+K++ +G++FSTYATW
Sbjct: 278 RAKKDLVEANLRLVVSVAKKYVNRGLHLLDLIQEGNIGLMRAADKFEYRRGYKFSTYATW 337
Query: 232 WIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAPTEAEISARSNLPVAK 411
WIRQAITRAIAD SR IR+PVH+N+++ + ++ L ELGR PT EI R ++PV K
Sbjct: 338 WIRQAITRAIADQSRTIRIPVHMNESMNKFLRATRELEKELGRTPTNDEIGRRMDIPVEK 397
Query: 412 MRFLADASQSTVSLDMPIGK 471
++ L S+ VSL+ P+G+
Sbjct: 398 VQKLKTISRDPVSLETPVGR 417
[105][TOP]
>UniRef100_Q8GIB1 RNA polymerase sigma factor (Fragment) n=1 Tax=Oscillatoria sp. PCC
7112 RepID=Q8GIB1_9CYAN
Length = 188
Score = 167 bits (423), Expect = 4e-40
Identities = 82/141 (58%), Positives = 107/141 (75%)
Frame = +1
Query: 115 LNRGLLLQDLIQEGSIGLIRGAEKYDASKGFRFSTYATWWIRQAITRAIADHSRPIRLPV 294
+NRGL QDLIQEGS+GLIR AEK+D KG++FSTYATWWIRQAITRAIAD SR IRLPV
Sbjct: 1 MNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPV 60
Query: 295 HVNDTLAALRKTSKLLSVELGRAPTEAEISARSNLPVAKMRFLADASQSTVSLDMPIGKK 474
H+ +T++ ++KT+KLLS E+GR PTE EI+ R + + K+RF+A ++Q +SL+ PIGK+
Sbjct: 61 HLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKE 120
Query: 475 SGGDPGCATLGSFIVWSGDDP 537
+ LG FI G+ P
Sbjct: 121 ED-----SRLGDFIESDGETP 136
[106][TOP]
>UniRef100_Q84J05 RNA polymerase sigma factor (Fragment) n=1 Tax=Synechococcus
leopoliensis RepID=Q84J05_SYNLE
Length = 188
Score = 167 bits (423), Expect = 4e-40
Identities = 82/141 (58%), Positives = 107/141 (75%)
Frame = +1
Query: 115 LNRGLLLQDLIQEGSIGLIRGAEKYDASKGFRFSTYATWWIRQAITRAIADHSRPIRLPV 294
+NRGL QDLIQEGS+GLIR AEK+D KG++FSTYATWWIRQAITRAIAD SR IRLPV
Sbjct: 1 MNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPV 60
Query: 295 HVNDTLAALRKTSKLLSVELGRAPTEAEISARSNLPVAKMRFLADASQSTVSLDMPIGKK 474
H+ +T++ ++KT+KLLS E+GR PTE EI+ R + + K+RF+A ++Q +SL+ PIGK+
Sbjct: 61 HLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKE 120
Query: 475 SGGDPGCATLGSFIVWSGDDP 537
+ LG FI G+ P
Sbjct: 121 ED-----SRLGDFIEADGETP 136
[107][TOP]
>UniRef100_Q84IZ8 RNA polymerase sigma factor (Fragment) n=11 Tax=Cyanobacteria
RepID=Q84IZ8_9CYAN
Length = 188
Score = 167 bits (423), Expect = 4e-40
Identities = 82/141 (58%), Positives = 107/141 (75%)
Frame = +1
Query: 115 LNRGLLLQDLIQEGSIGLIRGAEKYDASKGFRFSTYATWWIRQAITRAIADHSRPIRLPV 294
+NRGL QDLIQEGS+GLIR AEK+D KG++FSTYATWWIRQAITRAIAD SR IRLPV
Sbjct: 1 MNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPV 60
Query: 295 HVNDTLAALRKTSKLLSVELGRAPTEAEISARSNLPVAKMRFLADASQSTVSLDMPIGKK 474
H+ +T++ ++KT+KLLS E+GR PTE EI+ R + + K+RF+A ++Q +SL+ PIGK+
Sbjct: 61 HLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKE 120
Query: 475 SGGDPGCATLGSFIVWSGDDP 537
+ LG FI G+ P
Sbjct: 121 ED-----SRLGDFIESDGETP 136
[108][TOP]
>UniRef100_Q05XW0 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. RS9916
RepID=Q05XW0_9SYNE
Length = 321
Score = 167 bits (423), Expect = 4e-40
Identities = 83/148 (56%), Positives = 111/148 (75%)
Frame = +1
Query: 25 LRRQLRCGLRAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEKYDASKG 204
L+R+L+ G RAKERMV+ANLRLVVS+AKKY R + L DLIQEG+IGL+RG EK+D ++G
Sbjct: 76 LKRKLQAGRRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRG 135
Query: 205 FRFSTYATWWIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAPTEAEIS 384
++FSTYA WWIRQ ITRAIA+ SR IRLP+H+ + L L+K + LS ELGR PT E++
Sbjct: 136 YKFSTYAYWWIRQGITRAIAEKSRTIRLPIHITEMLNKLKKGQRELSQELGRTPTVTELA 195
Query: 385 ARSNLPVAKMRFLADASQSTVSLDMPIG 468
LP +++ L ++ VSL+M +G
Sbjct: 196 EFVELPEEEVKDLMCRARQPVSLEMKVG 223
[109][TOP]
>UniRef100_Q05UJ7 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. RS9916
RepID=Q05UJ7_9SYNE
Length = 341
Score = 167 bits (423), Expect = 4e-40
Identities = 83/148 (56%), Positives = 111/148 (75%)
Frame = +1
Query: 25 LRRQLRCGLRAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEKYDASKG 204
L+R+L+ G RAKERMV+ANLRLVVS+AKKY R + L DLIQEG+IGL+RG EK+D ++G
Sbjct: 96 LKRKLQAGRRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRG 155
Query: 205 FRFSTYATWWIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAPTEAEIS 384
++FSTYA WWIRQ ITRAIA+ SR IRLP+H+ + L L+K + LS ELGR PT E++
Sbjct: 156 YKFSTYAYWWIRQGITRAIAEKSRTIRLPIHITEMLNKLKKGQRELSQELGRTPTVTELA 215
Query: 385 ARSNLPVAKMRFLADASQSTVSLDMPIG 468
LP +++ L ++ VSL+M +G
Sbjct: 216 EFVELPEEEVKDLMCRARQPVSLEMKVG 243
[110][TOP]
>UniRef100_C0BBA6 RNA polymerase sigma factor n=1 Tax=Coprococcus comes ATCC 27758
RepID=C0BBA6_9FIRM
Length = 371
Score = 167 bits (423), Expect = 4e-40
Identities = 86/154 (55%), Positives = 113/154 (73%)
Frame = +1
Query: 55 AKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEKYDASKGFRFSTYATWW 234
AK+R+ ANLRLVVSIAK+Y+ RG+L DLIQEG++GLI+ EK+D KGF+FSTYATWW
Sbjct: 134 AKKRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDYQKGFKFSTYATWW 193
Query: 235 IRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAPTEAEISARSNLPVAKM 414
IRQAITRAIAD +R IR+PVH+ +T+ L + S+ L ELGR PT EI+A ++PV ++
Sbjct: 194 IRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQELGREPTPEEIAAELDMPVDRV 253
Query: 415 RFLADASQSTVSLDMPIGKKSGGDPGCATLGSFI 516
R + SQ VSL+ PIG++ + LG FI
Sbjct: 254 REILKISQEPVSLETPIGEEED-----SHLGDFI 282
[111][TOP]
>UniRef100_A6BEL2 RNA polymerase sigma factor n=1 Tax=Dorea longicatena DSM 13814
RepID=A6BEL2_9FIRM
Length = 369
Score = 167 bits (423), Expect = 4e-40
Identities = 86/154 (55%), Positives = 113/154 (73%)
Frame = +1
Query: 55 AKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEKYDASKGFRFSTYATWW 234
AK+R+ ANLRLVVSIAK+Y+ RG+L DLIQEG++GLI+ EK+D KGF+FSTYATWW
Sbjct: 132 AKKRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDYHKGFKFSTYATWW 191
Query: 235 IRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAPTEAEISARSNLPVAKM 414
IRQAITRAIAD +R IR+PVH+ +T+ L + S+ L ELGR PT EI+A ++PV ++
Sbjct: 192 IRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQELGREPTPEEIAAELDMPVERV 251
Query: 415 RFLADASQSTVSLDMPIGKKSGGDPGCATLGSFI 516
R + SQ VSL+ PIG++ + LG FI
Sbjct: 252 REILKISQEPVSLETPIGEEED-----SHLGDFI 280
[112][TOP]
>UniRef100_Q3B0L4 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. CC9902
RepID=Q3B0L4_SYNS9
Length = 332
Score = 167 bits (422), Expect = 6e-40
Identities = 83/154 (53%), Positives = 114/154 (74%)
Frame = +1
Query: 7 DMDVAALRRQLRCGLRAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEK 186
++ L+R+L+ G RAKERMV+ANLRLVVS+AKKY R + L DLIQEG+IGL+RG EK
Sbjct: 81 ELSTVQLKRKLQQGHRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEK 140
Query: 187 YDASKGFRFSTYATWWIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAP 366
+D ++G++FSTYA WWIRQ ITRAIA+ SR IRLP+H+ + L L+K + LS ELGR P
Sbjct: 141 FDPTRGYKFSTYAYWWIRQGITRAIAEKSRTIRLPIHITEMLNKLKKGQRELSQELGRTP 200
Query: 367 TEAEISARSNLPVAKMRFLADASQSTVSLDMPIG 468
T E++ +LP +++ L ++ VSL+M +G
Sbjct: 201 TVTELAQFVDLPEDEVKDLMCRARQPVSLEMKVG 234
[113][TOP]
>UniRef100_Q062S3 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. BL107
RepID=Q062S3_9SYNE
Length = 332
Score = 167 bits (422), Expect = 6e-40
Identities = 83/154 (53%), Positives = 114/154 (74%)
Frame = +1
Query: 7 DMDVAALRRQLRCGLRAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEK 186
++ L+R+L+ G RAKERMV+ANLRLVVS+AKKY R + L DLIQEG+IGL+RG EK
Sbjct: 81 ELSTVQLKRKLQQGHRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEK 140
Query: 187 YDASKGFRFSTYATWWIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAP 366
+D ++G++FSTYA WWIRQ ITRAIA+ SR IRLP+H+ + L L+K + LS ELGR P
Sbjct: 141 FDPTRGYKFSTYAYWWIRQGITRAIAEKSRTIRLPIHITEMLNKLKKGQRELSQELGRTP 200
Query: 367 TEAEISARSNLPVAKMRFLADASQSTVSLDMPIG 468
T E++ +LP +++ L ++ VSL+M +G
Sbjct: 201 TVTELAQFVDLPEDEVKDLMCRARQPVSLEMKVG 234
[114][TOP]
>UniRef100_B4WG00 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. PCC 7335
RepID=B4WG00_9SYNE
Length = 319
Score = 167 bits (422), Expect = 6e-40
Identities = 84/163 (51%), Positives = 117/163 (71%)
Frame = +1
Query: 4 TDMDVAALRRQLRCGLRAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAE 183
T++ AL++ + G +AK++M+ +NLRLVVSIAKKY L + DLIQEGS+GL RG E
Sbjct: 66 TNLSPEALKKTVEIGQQAKDKMMRSNLRLVVSIAKKYRGSKLDMMDLIQEGSLGLCRGVE 125
Query: 184 KYDASKGFRFSTYATWWIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRA 363
K+D KG+RFSTYA WWIRQAITRAIAD R IRLP+H+N+ L+ +RK + +S+ELGR
Sbjct: 126 KFDPLKGYRFSTYAYWWIRQAITRAIADTGRTIRLPIHINEKLSKIRKAQREVSLELGRP 185
Query: 364 PTEAEISARSNLPVAKMRFLADASQSTVSLDMPIGKKSGGDPG 492
T +E++ + +LP K+R L S+ +SL+M IG + + G
Sbjct: 186 ATVSEVAEKVSLPAEKVRELQRQSRLPLSLNMRIGSEQNTELG 228
[115][TOP]
>UniRef100_P52328 RNA polymerase sigma factor rpoD n=1 Tax=Bacillus sp.
RepID=RPSD2_BACSP
Length = 377
Score = 167 bits (422), Expect = 6e-40
Identities = 89/170 (52%), Positives = 117/170 (68%)
Frame = +1
Query: 7 DMDVAALRRQLRCGLRAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEK 186
D +V +R + AK R+ ANLRLVVSIAK+Y+ RG+L DLIQEG++GLI+ EK
Sbjct: 124 DDEVELAKRIMNGDEEAKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEK 183
Query: 187 YDASKGFRFSTYATWWIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAP 366
+D +KGF+FSTYATWWIRQAITRAIAD +R IR+PVH+ +T+ L + S+ L ELGR P
Sbjct: 184 FDHNKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQELGREP 243
Query: 367 TEAEISARSNLPVAKMRFLADASQSTVSLDMPIGKKSGGDPGCATLGSFI 516
T EI+A L V K+R + +Q VSL+ PIG++ + LG FI
Sbjct: 244 TPEEIAAEMELSVEKVREIMKIAQEPVSLETPIGEEDD-----SHLGDFI 288
[116][TOP]
>UniRef100_Q7ND77 RNA polymerase sigma factor n=1 Tax=Gloeobacter violaceus
RepID=Q7ND77_GLOVI
Length = 344
Score = 166 bits (421), Expect = 7e-40
Identities = 84/168 (50%), Positives = 120/168 (71%)
Frame = +1
Query: 13 DVAALRRQLRCGLRAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEKYD 192
D AL R GL A+ ++++ANLRLVVSIAKKY+ R + DLIQEG+IGL+R EK+D
Sbjct: 92 DPKALIEATRQGLWAQRKLINANLRLVVSIAKKYIGRNVPFLDLIQEGNIGLMRATEKFD 151
Query: 193 ASKGFRFSTYATWWIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAPTE 372
KG+RFSTYATWWIRQ+ITRAIA+ +R IRLP+H+ + + +R+ ++ ++ELGR P+E
Sbjct: 152 PEKGYRFSTYATWWIRQSITRAIANQARTIRLPIHMVEKVRKVRREMRMATLELGRRPSE 211
Query: 373 AEISARSNLPVAKMRFLADASQSTVSLDMPIGKKSGGDPGCATLGSFI 516
E+++R + V K+R + + S+ VSLDMP+G + G +LG I
Sbjct: 212 DELASRLAIKVKKLRTIQEVSRQPVSLDMPVGSE-----GDISLGEMI 254
[117][TOP]
>UniRef100_Q2JNL1 RNA polymerase sigma factor n=1 Tax=Synechococcus sp.
JA-2-3B'a(2-13) RepID=Q2JNL1_SYNJB
Length = 361
Score = 166 bits (421), Expect = 7e-40
Identities = 81/155 (52%), Positives = 116/155 (74%)
Frame = +1
Query: 10 MDVAALRRQLRCGLRAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEKY 189
+ V+ LR ++R G +A+ ++++ANLRLVVS+AKKYLNRG+ DLIQEG+IGLIR EK+
Sbjct: 109 ISVSTLRSRIRQGEQAQRKLINANLRLVVSVAKKYLNRGVPFLDLIQEGNIGLIRATEKF 168
Query: 190 DASKGFRFSTYATWWIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAPT 369
+A +GFRFSTYA WWIRQ ITR IA+ +R IRLPVH+ D + L++T++ L GR PT
Sbjct: 169 NAERGFRFSTYAHWWIRQGITRCIANQARTIRLPVHMVDKVRLLKRTNRELMKLQGRRPT 228
Query: 370 EAEISARSNLPVAKMRFLADASQSTVSLDMPIGKK 474
EAE++ + V K+R + A+ +SLD+P+G++
Sbjct: 229 EAELAEALGIKVKKLRMIQQAAALPLSLDVPVGQE 263
[118][TOP]
>UniRef100_A5GM05 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. WH 7803
RepID=A5GM05_SYNPW
Length = 322
Score = 166 bits (421), Expect = 7e-40
Identities = 82/153 (53%), Positives = 113/153 (73%)
Frame = +1
Query: 10 MDVAALRRQLRCGLRAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEKY 189
+ L+R+L+ G RAKERMV+ANLRLVVS+AKKY R + L DLIQEG+IGL+RG EK+
Sbjct: 71 LSAVQLKRKLQAGRRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKF 130
Query: 190 DASKGFRFSTYATWWIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAPT 369
D ++G++FSTYA WWIRQ ITRAIA+ SR IRLP+H+ + L L+K + LS +LGR P+
Sbjct: 131 DPTRGYKFSTYAYWWIRQGITRAIAEKSRTIRLPIHITEMLNKLKKGQRELSQDLGRTPS 190
Query: 370 EAEISARSNLPVAKMRFLADASQSTVSLDMPIG 468
E++A LP +++ L ++ VSL+M +G
Sbjct: 191 VTELAAFVELPEDEVKELMCRARQPVSLEMKVG 223
[119][TOP]
>UniRef100_A5GI14 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. WH 7803
RepID=A5GI14_SYNPW
Length = 355
Score = 166 bits (421), Expect = 7e-40
Identities = 82/153 (53%), Positives = 113/153 (73%)
Frame = +1
Query: 10 MDVAALRRQLRCGLRAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEKY 189
+ L+R+L+ G RAKERMV+ANLRLVVS+AKKY R + L DLIQEG+IGL+RG EK+
Sbjct: 105 LSAVQLKRKLQAGRRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKF 164
Query: 190 DASKGFRFSTYATWWIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAPT 369
D ++G++FSTYA WWIRQ ITRAIA+ SR IRLP+H+ + L L+K + LS +LGR P+
Sbjct: 165 DPTRGYKFSTYAYWWIRQGITRAIAEKSRTIRLPIHITEMLNKLKKGQRELSQDLGRTPS 224
Query: 370 EAEISARSNLPVAKMRFLADASQSTVSLDMPIG 468
E++A LP +++ L ++ VSL+M +G
Sbjct: 225 VTELAAFVELPEDEVKELMCRARQPVSLEMKVG 257
[120][TOP]
>UniRef100_B4BFA8 RNA polymerase sigma factor n=1 Tax=Clostridium thermocellum DSM
4150 RepID=B4BFA8_CLOTM
Length = 270
Score = 166 bits (421), Expect = 7e-40
Identities = 83/140 (59%), Positives = 104/140 (74%)
Frame = +1
Query: 55 AKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEKYDASKGFRFSTYATWW 234
AK R+ ANLRLVVSIAK+Y+ RG+L DLIQEG++GLI+ EK+D KGF+FSTYATWW
Sbjct: 121 AKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDYRKGFKFSTYATWW 180
Query: 235 IRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAPTEAEISARSNLPVAKM 414
IRQAITRAIAD R IR+PVH+ +T+ L + S+ L ELGR P EI+ N+PV K+
Sbjct: 181 IRQAITRAIADQGRSIRIPVHMVETINKLIRVSRQLLQELGREPHPEEIAKEMNMPVEKV 240
Query: 415 RFLADASQSTVSLDMPIGKK 474
R + SQ VSL+ PIGK+
Sbjct: 241 REIMKISQEPVSLETPIGKR 260
[121][TOP]
>UniRef100_A4CYD7 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. WH 7805
RepID=A4CYD7_SYNPV
Length = 355
Score = 166 bits (421), Expect = 7e-40
Identities = 82/153 (53%), Positives = 113/153 (73%)
Frame = +1
Query: 10 MDVAALRRQLRCGLRAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEKY 189
+ L+R+L+ G RAKERMV+ANLRLVVS+AKKY R + L DLIQEG+IGL+RG EK+
Sbjct: 105 LSAVQLKRKLQAGRRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKF 164
Query: 190 DASKGFRFSTYATWWIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAPT 369
D ++G++FSTYA WWIRQ ITRAIA+ SR IRLP+H+ + L L+K + LS ELGR P+
Sbjct: 165 DPTRGYKFSTYAYWWIRQGITRAIAEKSRTIRLPIHITEMLNKLKKGQRELSQELGRTPS 224
Query: 370 EAEISARSNLPVAKMRFLADASQSTVSLDMPIG 468
E+++ LP +++ L ++ VSL+M +G
Sbjct: 225 VTELASFVELPEDEVKELMCRARQPVSLEMKVG 257
[122][TOP]
>UniRef100_A4CVK0 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. WH 7805
RepID=A4CVK0_SYNPV
Length = 322
Score = 166 bits (421), Expect = 7e-40
Identities = 82/153 (53%), Positives = 113/153 (73%)
Frame = +1
Query: 10 MDVAALRRQLRCGLRAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEKY 189
+ L+R+L+ G RAKERMV+ANLRLVVS+AKKY R + L DLIQEG+IGL+RG EK+
Sbjct: 71 LSAVQLKRKLQAGRRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKF 130
Query: 190 DASKGFRFSTYATWWIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAPT 369
D ++G++FSTYA WWIRQ ITRAIA+ SR IRLP+H+ + L L+K + LS ELGR P+
Sbjct: 131 DPTRGYKFSTYAYWWIRQGITRAIAEKSRTIRLPIHITEMLNKLKKGQRELSQELGRTPS 190
Query: 370 EAEISARSNLPVAKMRFLADASQSTVSLDMPIG 468
E+++ LP +++ L ++ VSL+M +G
Sbjct: 191 VTELASFVELPEDEVKELMCRARQPVSLEMKVG 223
[123][TOP]
>UniRef100_A7NG03 RNA polymerase sigma factor n=1 Tax=Roseiflexus castenholzii DSM
13941 RepID=A7NG03_ROSCS
Length = 541
Score = 166 bits (420), Expect = 1e-39
Identities = 85/157 (54%), Positives = 111/157 (70%)
Frame = +1
Query: 46 GLRAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEKYDASKGFRFSTYA 225
G A+E + ANLRLVVS+AKKY+ RGL L DLIQEG++GLIR EK+D KGF+FSTYA
Sbjct: 301 GKTAREDLTQANLRLVVSVAKKYIGRGLQLLDLIQEGNVGLIRAVEKFDYRKGFKFSTYA 360
Query: 226 TWWIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAPTEAEISARSNLPV 405
TWWIRQAITRAIAD +R IR+PVH+ +T+ L + S+ + ELGR PT+ E+S +PV
Sbjct: 361 TWWIRQAITRAIADQARTIRIPVHMVETINRLMRESRRMLQELGREPTDEELSRALGIPV 420
Query: 406 AKMRFLADASQSTVSLDMPIGKKSGGDPGCATLGSFI 516
K+R + S VSL+ P+G++ + LG FI
Sbjct: 421 DKVRSIRKTSLEPVSLETPVGQEED-----SQLGDFI 452
[124][TOP]
>UniRef100_A5UQ16 RNA polymerase sigma factor n=1 Tax=Roseiflexus sp. RS-1
RepID=A5UQ16_ROSS1
Length = 541
Score = 166 bits (420), Expect = 1e-39
Identities = 85/157 (54%), Positives = 111/157 (70%)
Frame = +1
Query: 46 GLRAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEKYDASKGFRFSTYA 225
G A+E + ANLRLVVS+AKKY+ RGL L DLIQEG++GLIR EK+D KGF+FSTYA
Sbjct: 301 GKTAREDLTQANLRLVVSVAKKYIGRGLQLLDLIQEGNVGLIRAVEKFDYRKGFKFSTYA 360
Query: 226 TWWIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAPTEAEISARSNLPV 405
TWWIRQAITRAIAD +R IR+PVH+ +T+ L + S+ + ELGR PT+ E+S +PV
Sbjct: 361 TWWIRQAITRAIADQARTIRIPVHMVETINRLMRESRRMLQELGREPTDEELSRALGIPV 420
Query: 406 AKMRFLADASQSTVSLDMPIGKKSGGDPGCATLGSFI 516
K+R + S VSL+ P+G++ + LG FI
Sbjct: 421 DKVRSIRKTSLEPVSLETPVGQEED-----SQLGDFI 452
[125][TOP]
>UniRef100_C1F1D9 RNA polymerase sigma factor n=2 Tax=Acidobacterium capsulatum
RepID=C1F1D9_ACIC5
Length = 597
Score = 166 bits (420), Expect = 1e-39
Identities = 84/155 (54%), Positives = 114/155 (73%)
Frame = +1
Query: 52 RAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEKYDASKGFRFSTYATW 231
+AK ++ ANLRLVVSIAKKY NRGL DLIQEG+IGL++ +K++ +G++FSTYATW
Sbjct: 354 QAKRELIEANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATW 413
Query: 232 WIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAPTEAEISARSNLPVAK 411
WIRQAITRAIAD +R IR+PVH+ +T+ L +TS+ L ELGR PT EI+ R ++PVAK
Sbjct: 414 WIRQAITRAIADQARTIRIPVHMIETINKLIRTSRQLVQELGREPTSEEIARRMDIPVAK 473
Query: 412 MRFLADASQSTVSLDMPIGKKSGGDPGCATLGSFI 516
+R + +Q +SL+ PIG++ + LG FI
Sbjct: 474 VRKVLKIAQEPISLETPIGEEED-----SHLGDFI 503
[126][TOP]
>UniRef100_Q2JRK5 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. JA-3-3Ab
RepID=Q2JRK5_SYNJA
Length = 361
Score = 166 bits (419), Expect = 1e-39
Identities = 80/153 (52%), Positives = 115/153 (75%)
Frame = +1
Query: 16 VAALRRQLRCGLRAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEKYDA 195
V+ LR ++R G +A+ ++++ANLRLVVS+AKKYLNRG+ DLIQEG++GLIR EK++A
Sbjct: 111 VSTLRSRIRQGEQAQRKLINANLRLVVSVAKKYLNRGVPFLDLIQEGNMGLIRATEKFNA 170
Query: 196 SKGFRFSTYATWWIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAPTEA 375
+GFRFSTYA WWIRQ ITR IA+ +R IRLPVH+ D + L++T++ L GR PTEA
Sbjct: 171 ERGFRFSTYAHWWIRQGITRCIANQARTIRLPVHMVDKVRLLKRTNRELMKARGRRPTEA 230
Query: 376 EISARSNLPVAKMRFLADASQSTVSLDMPIGKK 474
E++ + V K+R + A+ +SLD+P+G++
Sbjct: 231 ELAEALGIKVKKLRMIQQAAALPLSLDVPVGQE 263
[127][TOP]
>UniRef100_A3DDV0 RNA polymerase sigma factor n=1 Tax=Clostridium thermocellum ATCC
27405 RepID=A3DDV0_CLOTH
Length = 358
Score = 166 bits (419), Expect = 1e-39
Identities = 86/154 (55%), Positives = 110/154 (71%)
Frame = +1
Query: 55 AKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEKYDASKGFRFSTYATWW 234
AK R+ ANLRLVVSIAK+Y+ RG+L DLIQEG++GLI+ EK+D KGF+FSTYATWW
Sbjct: 121 AKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDYRKGFKFSTYATWW 180
Query: 235 IRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAPTEAEISARSNLPVAKM 414
IRQAITRAIAD +R IR+PVH+ +T+ L + S+ L ELGR P EI+ N+PV K+
Sbjct: 181 IRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQELGREPHPEEIAKEMNMPVEKV 240
Query: 415 RFLADASQSTVSLDMPIGKKSGGDPGCATLGSFI 516
R + SQ VSL+ PIG++ + LG FI
Sbjct: 241 REIMKISQEPVSLETPIGEEED-----SHLGDFI 269
[128][TOP]
>UniRef100_Q8GIB4 RNA polymerase sigma factor (Fragment) n=1 Tax=Anabaena cylindrica
RepID=Q8GIB4_ANACY
Length = 188
Score = 166 bits (419), Expect = 1e-39
Identities = 82/141 (58%), Positives = 106/141 (75%)
Frame = +1
Query: 115 LNRGLLLQDLIQEGSIGLIRGAEKYDASKGFRFSTYATWWIRQAITRAIADHSRPIRLPV 294
+NRGL QDLIQEGS+GLIR AEK D KG++FSTYATWWIRQAITRAIAD SR IRLPV
Sbjct: 1 MNRGLSFQDLIQEGSLGLIRAAEKLDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPV 60
Query: 295 HVNDTLAALRKTSKLLSVELGRAPTEAEISARSNLPVAKMRFLADASQSTVSLDMPIGKK 474
H+ +T++ ++KT+KLLS E+GR PTE EI+ R + + K+RF+A ++Q +SL+ PIGK+
Sbjct: 61 HLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKE 120
Query: 475 SGGDPGCATLGSFIVWSGDDP 537
+ LG FI G+ P
Sbjct: 121 ED-----SRLGDFIESDGETP 136
[129][TOP]
>UniRef100_Q84J07 RNA polymerase sigma factor (Fragment) n=1 Tax=Planktothrix
agardhii RepID=Q84J07_OSCAG
Length = 188
Score = 166 bits (419), Expect = 1e-39
Identities = 81/141 (57%), Positives = 107/141 (75%)
Frame = +1
Query: 115 LNRGLLLQDLIQEGSIGLIRGAEKYDASKGFRFSTYATWWIRQAITRAIADHSRPIRLPV 294
+NRGL QDLIQEGS+GLIR AEK++ KG++FSTYATWWIRQAITRAIAD SR IRLPV
Sbjct: 1 MNRGLSFQDLIQEGSLGLIRAAEKFEHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPV 60
Query: 295 HVNDTLAALRKTSKLLSVELGRAPTEAEISARSNLPVAKMRFLADASQSTVSLDMPIGKK 474
H+ +T++ ++KT+KLLS E+GR PTE EI+ R + + K+RF+A ++Q +SL+ PIGK+
Sbjct: 61 HLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKE 120
Query: 475 SGGDPGCATLGSFIVWSGDDP 537
+ LG FI G+ P
Sbjct: 121 ED-----SRLGDFIESDGETP 136
[130][TOP]
>UniRef100_C8WGN9 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1
Tax=Eggerthella lenta DSM 2243 RepID=C8WGN9_9ACTN
Length = 409
Score = 166 bits (419), Expect = 1e-39
Identities = 86/164 (52%), Positives = 115/164 (70%)
Frame = +1
Query: 25 LRRQLRCGLRAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEKYDASKG 204
L R + G+ AK++++ ANLRLVVSIAK+Y+ RG+L DLIQEG++GLIR EK+D +KG
Sbjct: 161 LGRIEQVGIDAKQQLIEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIRAVEKFDYTKG 220
Query: 205 FRFSTYATWWIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAPTEAEIS 384
F+FSTYATWWIRQAITRAIAD +R IR+PVH+ +T+ L + + L ELGR P+ EI
Sbjct: 221 FKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVRIQRQLLQELGREPSPEEIG 280
Query: 385 ARSNLPVAKMRFLADASQSTVSLDMPIGKKSGGDPGCATLGSFI 516
LP ++R + SQ VSL+ PIG++ + LG FI
Sbjct: 281 KEMGLPAERVREIQKISQEPVSLETPIGEEED-----SQLGDFI 319
[131][TOP]
>UniRef100_C7HEX3 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1
Tax=Clostridium thermocellum DSM 2360 RepID=C7HEX3_CLOTM
Length = 358
Score = 166 bits (419), Expect = 1e-39
Identities = 86/154 (55%), Positives = 110/154 (71%)
Frame = +1
Query: 55 AKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEKYDASKGFRFSTYATWW 234
AK R+ ANLRLVVSIAK+Y+ RG+L DLIQEG++GLI+ EK+D KGF+FSTYATWW
Sbjct: 121 AKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDYRKGFKFSTYATWW 180
Query: 235 IRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAPTEAEISARSNLPVAKM 414
IRQAITRAIAD +R IR+PVH+ +T+ L + S+ L ELGR P EI+ N+PV K+
Sbjct: 181 IRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQELGREPHPEEIAKEMNMPVEKV 240
Query: 415 RFLADASQSTVSLDMPIGKKSGGDPGCATLGSFI 516
R + SQ VSL+ PIG++ + LG FI
Sbjct: 241 REIMKISQEPVSLETPIGEEED-----SHLGDFI 269
[132][TOP]
>UniRef100_C0UXJ1 RNA polymerase sigma factor n=1 Tax=Thermobaculum terrenum ATCC
BAA-798 RepID=C0UXJ1_9BACT
Length = 463
Score = 166 bits (419), Expect = 1e-39
Identities = 86/157 (54%), Positives = 115/157 (73%)
Frame = +1
Query: 46 GLRAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEKYDASKGFRFSTYA 225
G AK +++ AN RLVVSIAKKYL RGL L DLIQEG+IGL+R A+K+D ++G++FSTYA
Sbjct: 222 GEGAKCKLIEANTRLVVSIAKKYLGRGLSLLDLIQEGNIGLMRAADKFDYTRGYKFSTYA 281
Query: 226 TWWIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAPTEAEISARSNLPV 405
TWWIRQA+TRAIAD SR IRLPVHV +T++ + KTS+ L ELG PT ++S+ +P+
Sbjct: 282 TWWIRQAVTRAIADQSRTIRLPVHVCETVSKIHKTSQKLQQELGHEPTIEQLSSELGMPM 341
Query: 406 AKMRFLADASQSTVSLDMPIGKKSGGDPGCATLGSFI 516
K+ + AS+ VSL+ PI G+ G + LG F+
Sbjct: 342 KKVVQIQQASKFPVSLEAPI-----GEDGDSMLGDFL 373
[133][TOP]
>UniRef100_C0FBN4 RNA polymerase sigma factor n=1 Tax=Clostridium sp. M62/1
RepID=C0FBN4_9CLOT
Length = 372
Score = 166 bits (419), Expect = 1e-39
Identities = 84/154 (54%), Positives = 114/154 (74%)
Frame = +1
Query: 55 AKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEKYDASKGFRFSTYATWW 234
AK+R+ ANLRLVVSIAK+Y+ RG+ DLIQEG++GLI+ EKYD SKGF+FSTYATWW
Sbjct: 135 AKKRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNLGLIKAVEKYDYSKGFKFSTYATWW 194
Query: 235 IRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAPTEAEISARSNLPVAKM 414
IRQAITR+IAD +R IR+PVH+ +T+ L +TS+ L ELGR P+ E++ + ++PV ++
Sbjct: 195 IRQAITRSIADQARTIRIPVHMVETINRLIRTSRQLLQELGREPSAEELAEKLDMPVERV 254
Query: 415 RFLADASQSTVSLDMPIGKKSGGDPGCATLGSFI 516
R + SQ VSL+ PIG++ + LG FI
Sbjct: 255 REIMKISQDPVSLETPIGEEED-----SHLGDFI 283
[134][TOP]
>UniRef100_B9CNX8 RNA polymerase sigma factor n=1 Tax=Atopobium rimae ATCC 49626
RepID=B9CNX8_9ACTN
Length = 455
Score = 166 bits (419), Expect = 1e-39
Identities = 87/164 (53%), Positives = 116/164 (70%)
Frame = +1
Query: 25 LRRQLRCGLRAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEKYDASKG 204
L R + GL AK++++SANLRLVVSIAK+Y+ RG+L DLIQEG++GLIR EK+D +KG
Sbjct: 207 LMRIEQVGLDAKQQLISANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIRAVEKFDYTKG 266
Query: 205 FRFSTYATWWIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAPTEAEIS 384
F+FSTYATWWIRQAITRAIAD +R IR+PVH+ +T+ L + + L +LGR PT EI
Sbjct: 267 FKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGRDPTPEEIG 326
Query: 385 ARSNLPVAKMRFLADASQSTVSLDMPIGKKSGGDPGCATLGSFI 516
A + ++R + SQ VSL+ PIG++ + LG FI
Sbjct: 327 AEMGMSPDRVREIQKISQEPVSLETPIGEEED-----SQLGDFI 365
[135][TOP]
>UniRef100_B7AQM8 RNA polymerase sigma factor n=1 Tax=Bacteroides pectinophilus ATCC
43243 RepID=B7AQM8_9BACE
Length = 448
Score = 166 bits (419), Expect = 1e-39
Identities = 85/168 (50%), Positives = 116/168 (69%)
Frame = +1
Query: 13 DVAALRRQLRCGLRAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEKYD 192
++ +R + AK R+ ANLRLVVSIAK+Y+ RG+L DLIQEG++GLI+ +K+D
Sbjct: 197 EIELAKRMENGDVEAKNRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVDKFD 256
Query: 193 ASKGFRFSTYATWWIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAPTE 372
KGF+FSTYATWWIRQAITRAIAD +R IR+PVH+ +T+ L + S+ L ELGR PT
Sbjct: 257 FRKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLLRVSRQLLQELGREPTP 316
Query: 373 AEISARSNLPVAKMRFLADASQSTVSLDMPIGKKSGGDPGCATLGSFI 516
EI+ ++PV ++R + SQ VSL+ PIG++ + LG FI
Sbjct: 317 EEIAKEMDIPVERVREIQKISQEPVSLETPIGEEED-----SHLGDFI 359
[136][TOP]
>UniRef100_Q7V934 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
MIT 9313 RepID=Q7V934_PROMM
Length = 335
Score = 165 bits (418), Expect = 2e-39
Identities = 81/148 (54%), Positives = 112/148 (75%)
Frame = +1
Query: 25 LRRQLRCGLRAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEKYDASKG 204
L+++L+ G RAKERMVSANLRLVVS+AKKY R + L DLIQEG+IGL+RG EK+D ++G
Sbjct: 90 LKKKLQSGRRAKERMVSANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRG 149
Query: 205 FRFSTYATWWIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAPTEAEIS 384
++FSTYA WWIRQ ITRAIA+ SR IRLP+H+ + L L+K + LS E+GR PT +E++
Sbjct: 150 YKFSTYAYWWIRQGITRAIAEKSRTIRLPIHITEMLNKLKKGQRELSQEMGRTPTVSELA 209
Query: 385 ARSNLPVAKMRFLADASQSTVSLDMPIG 468
LP +++ L ++ +SL+M +G
Sbjct: 210 EFVELPEEEVKDLMCRARQPMSLEMKVG 237
[137][TOP]
>UniRef100_Q7V6S8 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
MIT 9313 RepID=Q7V6S8_PROMM
Length = 320
Score = 165 bits (418), Expect = 2e-39
Identities = 81/148 (54%), Positives = 112/148 (75%)
Frame = +1
Query: 25 LRRQLRCGLRAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEKYDASKG 204
L+++L+ G RAKERMVSANLRLVVS+AKKY R + L DLIQEG+IGL+RG EK+D ++G
Sbjct: 75 LKKKLQSGRRAKERMVSANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRG 134
Query: 205 FRFSTYATWWIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAPTEAEIS 384
++FSTYA WWIRQ ITRAIA+ SR IRLP+H+ + L L+K + LS E+GR PT +E++
Sbjct: 135 YKFSTYAYWWIRQGITRAIAEKSRTIRLPIHITEMLNKLKKGQRELSQEMGRTPTVSELA 194
Query: 385 ARSNLPVAKMRFLADASQSTVSLDMPIG 468
LP +++ L ++ +SL+M +G
Sbjct: 195 EFVELPEEEVKDLMCRARQPMSLEMKVG 222
[138][TOP]
>UniRef100_Q7NKZ2 RNA polymerase sigma factor n=1 Tax=Gloeobacter violaceus
RepID=Q7NKZ2_GLOVI
Length = 350
Score = 165 bits (418), Expect = 2e-39
Identities = 86/167 (51%), Positives = 117/167 (70%)
Frame = +1
Query: 37 LRCGLRAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEKYDASKGFRFS 216
+R G RAK +V ANLRLVVS+AKKY RGL L DLIQEG++GLIR AEK+D ++GF+FS
Sbjct: 103 VREGERAKAHLVKANLRLVVSVAKKYQGRGLHLLDLIQEGTLGLIRAAEKFDYTRGFKFS 162
Query: 217 TYATWWIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAPTEAEISARSN 396
TYATWWIRQ ITRAIA +R IRLPVH+ + + ++K ++ LS +LGR+P+E EI+
Sbjct: 163 TYATWWIRQGITRAIAMQARTIRLPVHIVEKVNRIKKATRQLSQQLGRSPSEDEIAQAVE 222
Query: 397 LPVAKMRFLADASQSTVSLDMPIGKKSGGDPGCATLGSFIVWSGDDP 537
+ ++RF+ A Q VSL+ P+G++ LG I G++P
Sbjct: 223 MDADQLRFVRKAIQLPVSLETPVGREED-----TALGDLIQAKGNEP 264
[139][TOP]
>UniRef100_A2C8C3 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
MIT 9303 RepID=A2C8C3_PROM3
Length = 320
Score = 165 bits (418), Expect = 2e-39
Identities = 81/148 (54%), Positives = 112/148 (75%)
Frame = +1
Query: 25 LRRQLRCGLRAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEKYDASKG 204
L+++L+ G RAKERMVSANLRLVVS+AKKY R + L DLIQEG+IGL+RG EK+D ++G
Sbjct: 75 LKKKLQSGRRAKERMVSANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRG 134
Query: 205 FRFSTYATWWIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAPTEAEIS 384
++FSTYA WWIRQ ITRAIA+ SR IRLP+H+ + L L+K + LS E+GR PT +E++
Sbjct: 135 YKFSTYAYWWIRQGITRAIAEKSRTIRLPIHITEMLNKLKKGQRELSQEMGRTPTVSELA 194
Query: 385 ARSNLPVAKMRFLADASQSTVSLDMPIG 468
LP +++ L ++ +SL+M +G
Sbjct: 195 EFVELPEEEVKDLMCRARQPMSLEMKVG 222
[140][TOP]
>UniRef100_A2C609 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
MIT 9303 RepID=A2C609_PROM3
Length = 350
Score = 165 bits (418), Expect = 2e-39
Identities = 81/148 (54%), Positives = 112/148 (75%)
Frame = +1
Query: 25 LRRQLRCGLRAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEKYDASKG 204
L+++L+ G RAKERMVSANLRLVVS+AKKY R + L DLIQEG+IGL+RG EK+D ++G
Sbjct: 105 LKKKLQIGRRAKERMVSANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRG 164
Query: 205 FRFSTYATWWIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAPTEAEIS 384
++FSTYA WWIRQ ITRAIA+ SR IRLP+H+ + L L+K + LS E+GR PT +E++
Sbjct: 165 YKFSTYAYWWIRQGITRAIAEKSRTIRLPIHITEMLNKLKKGQRELSQEMGRTPTVSELA 224
Query: 385 ARSNLPVAKMRFLADASQSTVSLDMPIG 468
LP +++ L ++ +SL+M +G
Sbjct: 225 EFVELPEEEVKDLMCRARQPMSLEMKVG 252
[141][TOP]
>UniRef100_A5ZYP8 RNA polymerase sigma factor n=1 Tax=Ruminococcus obeum ATCC 29174
RepID=A5ZYP8_9FIRM
Length = 330
Score = 165 bits (418), Expect = 2e-39
Identities = 86/170 (50%), Positives = 117/170 (68%)
Frame = +1
Query: 7 DMDVAALRRQLRCGLRAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEK 186
D ++ +R + AK+R+ ANLRLVVSIAK+Y+ RG+L DLIQEG++GLI+ EK
Sbjct: 77 DEEIELAKRMEQGDEEAKKRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEK 136
Query: 187 YDASKGFRFSTYATWWIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAP 366
+D KG++FSTYATWWIRQAITRAIAD +R IR+PVH+ +T+ L + S+ L ELGR P
Sbjct: 137 FDYRKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQELGREP 196
Query: 367 TEAEISARSNLPVAKMRFLADASQSTVSLDMPIGKKSGGDPGCATLGSFI 516
T EI+ +PV ++R + SQ VSL+ PIG++ + LG FI
Sbjct: 197 TPEEIAEEMKMPVDRVREILKISQEPVSLETPIGEEED-----SHLGDFI 241
[142][TOP]
>UniRef100_UPI0001B57FF5 RNA polymerase sigma factor SigB n=1 Tax=Streptomyces sp. AA4
RepID=UPI0001B57FF5
Length = 343
Score = 165 bits (417), Expect = 2e-39
Identities = 89/164 (54%), Positives = 112/164 (68%)
Frame = +1
Query: 25 LRRQLRCGLRAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEKYDASKG 204
LR +R G AK ++ ANLRLVVS+AK+Y RG+ L DLIQEG++GLIR EK+D SKG
Sbjct: 96 LRALVRDGHVAKNHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAVEKFDYSKG 155
Query: 205 FRFSTYATWWIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAPTEAEIS 384
F+FSTYATWWIRQAITR +AD R IRLPVH+ + + L + + L +LGR T E+S
Sbjct: 156 FKFSTYATWWIRQAITRGMADQGRTIRLPVHLVEQVNKLARIRRDLHQQLGRDATHEELS 215
Query: 385 ARSNLPVAKMRFLADASQSTVSLDMPIGKKSGGDPGCATLGSFI 516
A S +PV K+ L D S+ VSLDMP+G + A LG FI
Sbjct: 216 AESGIPVHKISDLLDQSRDPVSLDMPVGTEED-----APLGDFI 254
[143][TOP]
>UniRef100_Q7UA00 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. WH 8102
RepID=Q7UA00_SYNPX
Length = 332
Score = 165 bits (417), Expect = 2e-39
Identities = 83/148 (56%), Positives = 110/148 (74%)
Frame = +1
Query: 25 LRRQLRCGLRAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEKYDASKG 204
L+R+L+ G RAKERMV+ANLRLVVS+AKKY R + L DLIQEG+IGL+RG EK+D ++G
Sbjct: 87 LKRKLQHGRRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRG 146
Query: 205 FRFSTYATWWIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAPTEAEIS 384
++FSTYA WWIRQ ITRAIA+ SR IRLP+H+ + L L+K + LS ELGR PT E++
Sbjct: 147 YKFSTYAYWWIRQGITRAIAEKSRTIRLPIHITEMLNKLKKGQRELSQELGRTPTITELA 206
Query: 385 ARSNLPVAKMRFLADASQSTVSLDMPIG 468
LP ++ L ++ VSL+M +G
Sbjct: 207 QYVELPEDDVKDLMCRARQPVSLEMKVG 234
[144][TOP]
>UniRef100_Q3Z904 RNA polymerase sigma factor n=1 Tax=Dehalococcoides ethenogenes 195
RepID=Q3Z904_DEHE1
Length = 520
Score = 165 bits (417), Expect = 2e-39
Identities = 86/155 (55%), Positives = 112/155 (72%)
Frame = +1
Query: 52 RAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEKYDASKGFRFSTYATW 231
RA+ ++ ANLRLVVS+AKK++ RG+ L DLIQEG+IGLIR EK+D +GF+FSTYATW
Sbjct: 282 RAERHLIQANLRLVVSVAKKHIGRGMPLLDLIQEGNIGLIRAVEKFDFHRGFKFSTYATW 341
Query: 232 WIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAPTEAEISARSNLPVAK 411
WIRQAITRAIAD +R IR+PVH+ +T+ L S+ LS +LGR PT EI+ +LP K
Sbjct: 342 WIRQAITRAIADQARTIRIPVHMVETINKLLSISRQLSQKLGREPTPDEIAVEMDLPPEK 401
Query: 412 MRFLADASQSTVSLDMPIGKKSGGDPGCATLGSFI 516
+R +A SQ VSL+ PIG++ + LG FI
Sbjct: 402 VREIAKVSQLPVSLESPIGEEED-----SHLGDFI 431
[145][TOP]
>UniRef100_Q3ANG0 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. CC9605
RepID=Q3ANG0_SYNSC
Length = 335
Score = 165 bits (417), Expect = 2e-39
Identities = 83/148 (56%), Positives = 110/148 (74%)
Frame = +1
Query: 25 LRRQLRCGLRAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEKYDASKG 204
L+R+L+ G RAKERMV+ANLRLVVS+AKKY R + L DLIQEG+IGL+RG EK+D ++G
Sbjct: 90 LKRKLQHGRRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRG 149
Query: 205 FRFSTYATWWIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAPTEAEIS 384
++FSTYA WWIRQ ITRAIA+ SR IRLP+H+ + L L+K + LS ELGR PT E++
Sbjct: 150 YKFSTYAYWWIRQGITRAIAEKSRTIRLPIHITEMLNKLKKGQRELSQELGRTPTVTELA 209
Query: 385 ARSNLPVAKMRFLADASQSTVSLDMPIG 468
LP ++ L ++ VSL+M +G
Sbjct: 210 EFVELPEDDVKDLMCRARQPVSLEMKVG 237
[146][TOP]
>UniRef100_Q1IIK4 RNA polymerase sigma factor n=1 Tax=Candidatus Koribacter
versatilis Ellin345 RepID=Q1IIK4_ACIBL
Length = 574
Score = 165 bits (417), Expect = 2e-39
Identities = 83/155 (53%), Positives = 115/155 (74%)
Frame = +1
Query: 52 RAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEKYDASKGFRFSTYATW 231
+AK+ ++ ANLRLVVSIAKKY NRGL DLIQEG+IGL++ +K++ +G++FSTYATW
Sbjct: 332 QAKKELIEANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATW 391
Query: 232 WIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAPTEAEISARSNLPVAK 411
WIRQAITRAIAD +R IR+PVH+ +T+ L +TS+ L ELGR P+ EI+ R ++PVAK
Sbjct: 392 WIRQAITRAIADQARTIRIPVHMIETINKLIRTSRQLVQELGREPSSEEIAKRMDIPVAK 451
Query: 412 MRFLADASQSTVSLDMPIGKKSGGDPGCATLGSFI 516
+R + +Q +SL+ PIG++ + LG FI
Sbjct: 452 VRKVLKIAQEPISLETPIGEEED-----SHLGDFI 481
[147][TOP]
>UniRef100_Q8GHK1 RNA polymerase sigma factor (Fragment) n=1 Tax=Scytonema sp. IAM
M-262 RepID=Q8GHK1_9CYAN
Length = 188
Score = 165 bits (417), Expect = 2e-39
Identities = 81/141 (57%), Positives = 106/141 (75%)
Frame = +1
Query: 115 LNRGLLLQDLIQEGSIGLIRGAEKYDASKGFRFSTYATWWIRQAITRAIADHSRPIRLPV 294
+NRGL QDLIQEGS+GLIR AEK+D KG++FSTYATWWIRQAITRAIAD SR IRLPV
Sbjct: 1 MNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPV 60
Query: 295 HVNDTLAALRKTSKLLSVELGRAPTEAEISARSNLPVAKMRFLADASQSTVSLDMPIGKK 474
H+ +T++ ++KT+KLLS E+GR PTE EI+ R + + K+RF+A ++Q +SL+ PIGK+
Sbjct: 61 HLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKE 120
Query: 475 SGGDPGCATLGSFIVWSGDDP 537
+ LG FI + P
Sbjct: 121 ED-----SRLGDFIESDSETP 136
[148][TOP]
>UniRef100_Q4C8R1 RNA polymerase sigma factor n=1 Tax=Crocosphaera watsonii WH 8501
RepID=Q4C8R1_CROWT
Length = 297
Score = 165 bits (417), Expect = 2e-39
Identities = 80/140 (57%), Positives = 107/140 (76%)
Frame = +1
Query: 46 GLRAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEKYDASKGFRFSTYA 225
G +A+ERM+ ANLRLVVSIAKKYLN GL L DLIQEGS+GLIRG EK+D ++G++FSTYA
Sbjct: 58 GQKARERMIEANLRLVVSIAKKYLNSGLSLLDLIQEGSLGLIRGVEKFDPARGYKFSTYA 117
Query: 226 TWWIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAPTEAEISARSNLPV 405
WWIRQ ITRAIA+ SR IRLP+H+N+ L RK+ + L+++LGR PT+ EI+ + V
Sbjct: 118 YWWIRQGITRAIAEQSRTIRLPIHINENLNKYRKSIRELTLKLGRKPTQREIAENMEISV 177
Query: 406 AKMRFLADASQSTVSLDMPI 465
+++FL A+ T S + +
Sbjct: 178 DRLQFLQQAAFKTKSRSLNV 197
[149][TOP]
>UniRef100_D0CM17 Type II alternative RNA polymerase sigma factor, sigma-70 family
n=1 Tax=Synechococcus sp. WH 8109 RepID=D0CM17_9SYNE
Length = 335
Score = 165 bits (417), Expect = 2e-39
Identities = 83/148 (56%), Positives = 110/148 (74%)
Frame = +1
Query: 25 LRRQLRCGLRAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEKYDASKG 204
L+R+L+ G RAKERMV+ANLRLVVS+AKKY R + L DLIQEG+IGL+RG EK+D ++G
Sbjct: 90 LKRKLQHGRRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRG 149
Query: 205 FRFSTYATWWIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAPTEAEIS 384
++FSTYA WWIRQ ITRAIA+ SR IRLP+H+ + L L+K + LS ELGR PT E++
Sbjct: 150 YKFSTYAYWWIRQGITRAIAEKSRTIRLPIHITEMLNKLKKGQRELSQELGRTPTVTELA 209
Query: 385 ARSNLPVAKMRFLADASQSTVSLDMPIG 468
LP ++ L ++ VSL+M +G
Sbjct: 210 EFVELPEDDVKDLMCRARQPVSLEMKVG 237
[150][TOP]
>UniRef100_A8RMR2 RNA polymerase sigma factor n=1 Tax=Clostridium bolteae ATCC
BAA-613 RepID=A8RMR2_9CLOT
Length = 378
Score = 165 bits (417), Expect = 2e-39
Identities = 87/169 (51%), Positives = 120/169 (71%), Gaps = 1/169 (0%)
Frame = +1
Query: 13 DVAALRRQLRCG-LRAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEKY 189
D L +++ G A++R+ +NLRLVVSIAK+Y+ RG+ DLIQEG++GLI+ EK+
Sbjct: 125 DEVELAKKMELGDPEARKRLAESNLRLVVSIAKRYVGRGMQFLDLIQEGNLGLIKAVEKF 184
Query: 190 DASKGFRFSTYATWWIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAPT 369
D +KG++FSTYATWWIRQAITRAIAD +R IR+PVH+ +T+ L +TS+ L ELGR PT
Sbjct: 185 DYTKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINRLVRTSRQLLQELGREPT 244
Query: 370 EAEISARSNLPVAKMRFLADASQSTVSLDMPIGKKSGGDPGCATLGSFI 516
EI+AR +LPV ++ + SQ VSL+ PIG++ + LG FI
Sbjct: 245 TEEIAARLDLPVERVSEIMKMSQEPVSLETPIGEEED-----SHLGDFI 288
[151][TOP]
>UniRef100_B8IZR4 RNA polymerase sigma factor n=1 Tax=Desulfovibrio desulfuricans
subsp. desulfuricans str. ATCC 27774 RepID=B8IZR4_DESDA
Length = 589
Score = 164 bits (416), Expect = 3e-39
Identities = 86/174 (49%), Positives = 121/174 (69%), Gaps = 2/174 (1%)
Frame = +1
Query: 1 VTDMDVAA--LRRQLRCGLRAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIR 174
VTD++ ++R +RAK+ ++ +NLRLVVSIAKKY NRGL DLIQEG+IGL++
Sbjct: 331 VTDLEEVLWRIKRGNTAAMRAKQELIRSNLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMK 390
Query: 175 GAEKYDASKGFRFSTYATWWIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVEL 354
+K++ +G++FSTYATWWIRQAITRAIAD +R IR+PVH+ +T+ L +TS+ L EL
Sbjct: 391 AVDKFEYQRGYKFSTYATWWIRQAITRAIADQARTIRIPVHMIETINKLIRTSRYLVQEL 450
Query: 355 GRAPTEAEISARSNLPVAKMRFLADASQSTVSLDMPIGKKSGGDPGCATLGSFI 516
GR PT EI+ R PV K++ + ++ +SL+ PI GD ++LG FI
Sbjct: 451 GRDPTPEEIAERMEYPVEKVKKVLKIAKEPISLETPI-----GDEEDSSLGDFI 499
[152][TOP]
>UniRef100_A5FRQ7 RNA polymerase sigma factor n=2 Tax=Dehalococcoides
RepID=A5FRQ7_DEHSB
Length = 520
Score = 164 bits (416), Expect = 3e-39
Identities = 86/155 (55%), Positives = 112/155 (72%)
Frame = +1
Query: 52 RAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEKYDASKGFRFSTYATW 231
RA+ ++ ANLRLVVS+AKK++ RG+ L DLIQEG+IGLIR EK+D +GF+FSTYATW
Sbjct: 282 RAERHLIQANLRLVVSVAKKHIGRGMPLLDLIQEGNIGLIRAVEKFDFHRGFKFSTYATW 341
Query: 232 WIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAPTEAEISARSNLPVAK 411
WIRQAITRAIAD +R IR+PVH+ +T+ L S+ LS +LGR PT EI+ +LP K
Sbjct: 342 WIRQAITRAIADQARTIRIPVHMVETINKLLSISRQLSQKLGREPTPDEIALEMDLPPEK 401
Query: 412 MRFLADASQSTVSLDMPIGKKSGGDPGCATLGSFI 516
+R +A SQ VSL+ PIG++ + LG FI
Sbjct: 402 VREIAKVSQLPVSLESPIGEEED-----SHLGDFI 431
[153][TOP]
>UniRef100_C7N4Z8 RNA polymerase sigma factor RpoD, C-terminal domain/RNA polymerase
sigma factor, sigma-70 family n=1 Tax=Slackia
heliotrinireducens DSM 20476 RepID=C7N4Z8_SLAHD
Length = 394
Score = 164 bits (416), Expect = 3e-39
Identities = 86/164 (52%), Positives = 115/164 (70%)
Frame = +1
Query: 25 LRRQLRCGLRAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEKYDASKG 204
L R + GL AK++++ ANLRLVVSIAK+Y+ RG+L DLIQEG++GLIR EK+D +KG
Sbjct: 146 LTRVEQVGLDAKDQLIEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIRAVEKFDYTKG 205
Query: 205 FRFSTYATWWIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAPTEAEIS 384
F+FSTYATWWIRQAITRAIAD +R IR+PVH+ +T+ L + + L ELGR P+ EI
Sbjct: 206 FKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVRIQRQLLQELGRDPSPEEIG 265
Query: 385 ARSNLPVAKMRFLADASQSTVSLDMPIGKKSGGDPGCATLGSFI 516
+ L ++R + SQ VSL+ PIG++ + LG FI
Sbjct: 266 EKMGLSAERVREIQKLSQEPVSLETPIGEEED-----SQLGDFI 304
[154][TOP]
>UniRef100_C5EJF9 RNA polymerase sigma factor n=1 Tax=Clostridiales bacterium
1_7_47FAA RepID=C5EJF9_9FIRM
Length = 374
Score = 164 bits (416), Expect = 3e-39
Identities = 83/154 (53%), Positives = 115/154 (74%)
Frame = +1
Query: 55 AKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEKYDASKGFRFSTYATWW 234
A++R+ +NLRLVVSIAK+Y+ RG+ DLIQEG++GLI+ EK+D +KG++FSTYATWW
Sbjct: 136 ARKRLAESNLRLVVSIAKRYVGRGMQFLDLIQEGNLGLIKAVEKFDYTKGYKFSTYATWW 195
Query: 235 IRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAPTEAEISARSNLPVAKM 414
IRQAITRAIAD +R IR+PVH+ +T+ L +TS+ L ELGR PT EI+AR++LPV ++
Sbjct: 196 IRQAITRAIADQARTIRIPVHMVETINRLVRTSRQLLQELGREPTTEEIAARADLPVERV 255
Query: 415 RFLADASQSTVSLDMPIGKKSGGDPGCATLGSFI 516
+ +Q VSL+ PIG++ + LG FI
Sbjct: 256 SEIMKMAQEPVSLETPIGEEED-----SHLGDFI 284
[155][TOP]
>UniRef100_C4G0D3 RNA polymerase sigma factor n=1 Tax=Abiotrophia defectiva ATCC
49176 RepID=C4G0D3_ABIDE
Length = 409
Score = 164 bits (416), Expect = 3e-39
Identities = 84/154 (54%), Positives = 110/154 (71%)
Frame = +1
Query: 55 AKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEKYDASKGFRFSTYATWW 234
A +R+ +NLRLVVSIAKKY+ RGL DLIQEG++GLI+ +K+D SKG++FSTYATWW
Sbjct: 171 ATDRLTESNLRLVVSIAKKYVGRGLSFLDLIQEGNLGLIKAVDKFDYSKGYKFSTYATWW 230
Query: 235 IRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAPTEAEISARSNLPVAKM 414
IRQAITR+IAD SR IR+PVH+++ + + S+ L ELGR PTE EI+ NLPV K+
Sbjct: 231 IRQAITRSIADQSRTIRIPVHMSEVINKAYRISRSLLQELGREPTEEEIAKEMNLPVEKV 290
Query: 415 RFLADASQSTVSLDMPIGKKSGGDPGCATLGSFI 516
R + S +SLD PIG++ + LG FI
Sbjct: 291 REIMKISADPISLDTPIGEEDD-----SHLGDFI 319
[156][TOP]
>UniRef100_A8CRQ1 RNA polymerase sigma factor n=1 Tax=Dehalococcoides sp. VS
RepID=A8CRQ1_9CHLR
Length = 520
Score = 164 bits (416), Expect = 3e-39
Identities = 86/155 (55%), Positives = 112/155 (72%)
Frame = +1
Query: 52 RAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEKYDASKGFRFSTYATW 231
RA+ ++ ANLRLVVS+AKK++ RG+ L DLIQEG+IGLIR EK+D +GF+FSTYATW
Sbjct: 282 RAERHLIQANLRLVVSVAKKHIGRGMPLLDLIQEGNIGLIRAVEKFDFHRGFKFSTYATW 341
Query: 232 WIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAPTEAEISARSNLPVAK 411
WIRQAITRAIAD +R IR+PVH+ +T+ L S+ LS +LGR PT EI+ +LP K
Sbjct: 342 WIRQAITRAIADQARTIRIPVHMVETINKLLSISRQLSQKLGREPTPDEIALEMDLPPEK 401
Query: 412 MRFLADASQSTVSLDMPIGKKSGGDPGCATLGSFI 516
+R +A SQ VSL+ PIG++ + LG FI
Sbjct: 402 VREIAKVSQLPVSLESPIGEEED-----SHLGDFI 431
[157][TOP]
>UniRef100_Q7NEW6 RNA polymerase sigma factor n=1 Tax=Gloeobacter violaceus
RepID=Q7NEW6_GLOVI
Length = 362
Score = 164 bits (415), Expect = 4e-39
Identities = 84/156 (53%), Positives = 109/156 (69%)
Frame = +1
Query: 25 LRRQLRCGLRAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEKYDASKG 204
L+RQ+ G RAK++M+ ANLRLVVS+AKKY NRGL L DL+QEG++GL R EK+D +KG
Sbjct: 113 LKRQVLAGSRAKKKMIEANLRLVVSVAKKYQNRGLELLDLVQEGTLGLERAVEKFDPTKG 172
Query: 205 FRFSTYATWWIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAPTEAEIS 384
+RFSTYA WWIRQ ITRAIA SR IRLPVH+ + L ++KT + LS LGR PT +EI+
Sbjct: 173 YRFSTYAYWWIRQGITRAIATQSRTIRLPVHITEKLNRIKKTQRKLSQNLGRTPTISEIA 232
Query: 385 ARSNLPVAKMRFLADASQSTVSLDMPIGKKSGGDPG 492
+ A +R L +VSL+ +GK + G
Sbjct: 233 EELEMEPAHVRELMSRVPRSVSLETRVGKDKDTELG 268
[158][TOP]
>UniRef100_A9B077 RNA polymerase sigma factor n=1 Tax=Herpetosiphon aurantiacus ATCC
23779 RepID=A9B077_HERA2
Length = 386
Score = 164 bits (415), Expect = 4e-39
Identities = 80/160 (50%), Positives = 113/160 (70%)
Frame = +1
Query: 13 DVAALRRQLRCGLRAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEKYD 192
D +L+R + G A++ ++ ANLRLVVSIAKKY + GL + DL+QEG+IGL+R EK+D
Sbjct: 135 DRISLKRHIDTGRAARQHLIQANLRLVVSIAKKYTSYGLTMMDLVQEGNIGLMRAVEKFD 194
Query: 193 ASKGFRFSTYATWWIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAPTE 372
+KG +FSTYATWWIRQAITRAIAD SR IRLPVH+ + ++ +++TS L + R PT
Sbjct: 195 YTKGHKFSTYATWWIRQAITRAIADQSRTIRLPVHMGEAISQVKRTSHKLQQTMQREPTP 254
Query: 373 AEISARSNLPVAKMRFLADASQSTVSLDMPIGKKSGGDPG 492
EI+ + +K+R +AS +SL+MP+G++ G G
Sbjct: 255 EEIAEAMGITASKVRRTLEASMHPLSLEMPVGQEGEGRMG 294
[159][TOP]
>UniRef100_Q8GIB6 RNA polymerase sigma factor (Fragment) n=1 Tax=Calothrix brevissima
RepID=Q8GIB6_9CYAN
Length = 188
Score = 164 bits (415), Expect = 4e-39
Identities = 81/141 (57%), Positives = 106/141 (75%)
Frame = +1
Query: 115 LNRGLLLQDLIQEGSIGLIRGAEKYDASKGFRFSTYATWWIRQAITRAIADHSRPIRLPV 294
+NRGL QDLIQEGS+GLIR AEK+D KG++FSTYATWWIRQAITRAIAD SR IRL V
Sbjct: 1 MNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLSV 60
Query: 295 HVNDTLAALRKTSKLLSVELGRAPTEAEISARSNLPVAKMRFLADASQSTVSLDMPIGKK 474
H+ +T++ ++KT+KLLS E+GR PTE EI+ R + + K+RF+A ++Q +SL+ PIGK+
Sbjct: 61 HLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKE 120
Query: 475 SGGDPGCATLGSFIVWSGDDP 537
+ LG FI G+ P
Sbjct: 121 ED-----SRLGDFIESDGETP 136
[160][TOP]
>UniRef100_C7MNW8 RNA polymerase sigma factor RpoD, C-terminal domain/RNA polymerase
sigma factor, sigma-70 family n=1 Tax=Cryptobacterium
curtum DSM 15641 RepID=C7MNW8_CRYCD
Length = 422
Score = 164 bits (415), Expect = 4e-39
Identities = 85/157 (54%), Positives = 113/157 (71%)
Frame = +1
Query: 46 GLRAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEKYDASKGFRFSTYA 225
GL AK++++ ANLRLVVSIAK+Y+ RG+L DLIQEG++GLIR EK+D +KGF+FSTYA
Sbjct: 181 GLDAKQQLIEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIRAVEKFDYTKGFKFSTYA 240
Query: 226 TWWIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAPTEAEISARSNLPV 405
TWWIRQAITRAIAD +R IR+PVH+ +T+ L + + L ELGR PT EI+ +L
Sbjct: 241 TWWIRQAITRAIADQARTIRIPVHMVETINKLVRIQRQLLQELGREPTPEEIAEEMDLTP 300
Query: 406 AKMRFLADASQSTVSLDMPIGKKSGGDPGCATLGSFI 516
++R + SQ VSL+ PIG++ + LG FI
Sbjct: 301 DRVREIQKISQEPVSLETPIGEEED-----SQLGDFI 332
[161][TOP]
>UniRef100_C1UL13 RNA polymerase sigma factor n=1 Tax=Haliangium ochraceum DSM 14365
RepID=C1UL13_9DELT
Length = 697
Score = 164 bits (415), Expect = 4e-39
Identities = 85/159 (53%), Positives = 113/159 (71%)
Frame = +1
Query: 40 RCGLRAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEKYDASKGFRFST 219
R RAK +V ANLRLVVSIAKKY NRGL DLIQEG+IGL++ +K++ +G++FST
Sbjct: 454 RMAERAKSELVEANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYKRGYKFST 513
Query: 220 YATWWIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAPTEAEISARSNL 399
YATWWIRQAITRAIAD +R IR+PVH+ +T+ L +TS+ L ELGR PT EI+ R L
Sbjct: 514 YATWWIRQAITRAIADQARTIRIPVHMIETINKLVRTSRYLVQELGREPTPEEIAERMEL 573
Query: 400 PVAKMRFLADASQSTVSLDMPIGKKSGGDPGCATLGSFI 516
P+ K+R + ++ +SL+ PIG++ + LG FI
Sbjct: 574 PLDKVRKVLKIAKEPISLETPIGEEED-----SHLGDFI 607
[162][TOP]
>UniRef100_C0UV59 RNA polymerase sigma factor n=1 Tax=Thermobaculum terrenum ATCC
BAA-798 RepID=C0UV59_9BACT
Length = 338
Score = 164 bits (415), Expect = 4e-39
Identities = 84/157 (53%), Positives = 113/157 (71%)
Frame = +1
Query: 46 GLRAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEKYDASKGFRFSTYA 225
G RA+ ++ ANLRLVVS+AKK++NRGL L DLI+EG+IGL+R +K+D KGF+FSTYA
Sbjct: 98 GERARRHLIEANLRLVVSVAKKHMNRGLSLLDLIEEGNIGLMRATDKFDYRKGFKFSTYA 157
Query: 226 TWWIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAPTEAEISARSNLPV 405
TWWIRQA+TRAIAD +R IRLPVH+ +T+ L K S+ LS ELGR PT E++ +
Sbjct: 158 TWWIRQAVTRAIADQARTIRLPVHITETMNHLYKASRKLSQELGREPTCEELAEYMGMNP 217
Query: 406 AKMRFLADASQSTVSLDMPIGKKSGGDPGCATLGSFI 516
K+R + AS+ +SL+ P+ G G ++LG FI
Sbjct: 218 EKVRLIMRASRHPLSLEGPV-----GTDGDSSLGQFI 249
[163][TOP]
>UniRef100_Q1RKH7 RNA polymerase sigma factor rpoD n=1 Tax=Rickettsia bellii RML369-C
RepID=RPOD_RICBR
Length = 641
Score = 164 bits (415), Expect = 4e-39
Identities = 85/167 (50%), Positives = 122/167 (73%)
Frame = +1
Query: 16 VAALRRQLRCGLRAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEKYDA 195
V A+++ R L+AK+ M+ ANLRLV+SIAKKY NRGL DLIQEG+IGL++ +K++
Sbjct: 375 VNAIQKSERQTLQAKKDMIEANLRLVISIAKKYANRGLQFLDLIQEGNIGLMKAVDKFEY 434
Query: 196 SKGFRFSTYATWWIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAPTEA 375
+G++FSTYATWWIRQAITRAIAD +R IR+PVH+ +T+ + +TS+ + ELG PT A
Sbjct: 435 RRGYKFSTYATWWIRQAITRAIADQARTIRIPVHMIETINKIIRTSRQMLNELGYEPTPA 494
Query: 376 EISARSNLPVAKMRFLADASQSTVSLDMPIGKKSGGDPGCATLGSFI 516
EI+AR ++P+ K+R + ++ +SL+ P+G GD + LG FI
Sbjct: 495 EIAARLSMPIDKVRKVMKIAKEPISLENPVG---DGDDN-SYLGDFI 537
[164][TOP]
>UniRef100_Q7V9N8 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus
RepID=Q7V9N8_PROMA
Length = 328
Score = 164 bits (414), Expect = 5e-39
Identities = 83/153 (54%), Positives = 111/153 (72%)
Frame = +1
Query: 10 MDVAALRRQLRCGLRAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEKY 189
+ V L ++L+ G+RAKERMVSANLRLVVS+AKKY R + L DLIQEG+IGL+RG EK+
Sbjct: 78 ISVRELSKRLKRGVRAKERMVSANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKF 137
Query: 190 DASKGFRFSTYATWWIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAPT 369
D ++G++FSTYA WWIRQ ITRAIA+ SR IRLP+H+ + L L+K + LS L R PT
Sbjct: 138 DPARGYKFSTYAYWWIRQGITRAIAEKSRIIRLPIHITELLNKLKKGQRELSQHLERTPT 197
Query: 370 EAEISARSNLPVAKMRFLADASQSTVSLDMPIG 468
E+SA +PV +++ L + VSL+ +G
Sbjct: 198 MQELSAYVEIPVEEVKDLMFRASQPVSLESKVG 230
[165][TOP]
>UniRef100_Q2GKD4 RNA polymerase sigma factor n=1 Tax=Anaplasma phagocytophilum HZ
RepID=Q2GKD4_ANAPZ
Length = 627
Score = 164 bits (414), Expect = 5e-39
Identities = 84/167 (50%), Positives = 116/167 (69%)
Frame = +1
Query: 16 VAALRRQLRCGLRAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEKYDA 195
VA +++ R RAK+ M+ ANLRLVVSIAKKY NRGL DL+QEG+IGL++ +K+D
Sbjct: 377 VAKIQKHERTANRAKQEMIKANLRLVVSIAKKYSNRGLQFLDLVQEGNIGLMKAVDKFDY 436
Query: 196 SKGFRFSTYATWWIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAPTEA 375
+G++FSTYATWW+RQAITRAIAD +R IR+PVH+ +T+ + +T + + E+GR PT
Sbjct: 437 KRGYKFSTYATWWVRQAITRAIADQARTIRIPVHMIETVNKINRTLRQMLHEIGREPTLE 496
Query: 376 EISARSNLPVAKMRFLADASQSTVSLDMPIGKKSGGDPGCATLGSFI 516
E+SAR N+ V K+R + + VSL+ PI GD +T G I
Sbjct: 497 ELSARLNINVEKIRKVMKIVKDPVSLESPI-----GDDDSSTFGDCI 538
[166][TOP]
>UniRef100_Q1ATP3 RNA polymerase sigma factor n=1 Tax=Rubrobacter xylanophilus DSM
9941 RepID=Q1ATP3_RUBXD
Length = 366
Score = 164 bits (414), Expect = 5e-39
Identities = 86/173 (49%), Positives = 119/173 (68%), Gaps = 1/173 (0%)
Frame = +1
Query: 1 VTDMDVAALRRQLRCGL-RAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRG 177
+T D L + + G R+K+++V ANLRLVVSIAKKY NRG+ DLIQEG+IGLIR
Sbjct: 110 LTHADEIRLAKAISRGCKRSKDKLVEANLRLVVSIAKKYRNRGVSFLDLIQEGNIGLIRA 169
Query: 178 AEKYDASKGFRFSTYATWWIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELG 357
AEK+D KGF+FSTYATWWIRQAITRAIAD R IR+PVH+ + + +T + ++ LG
Sbjct: 170 AEKFDYRKGFKFSTYATWWIRQAITRAIADKGRTIRIPVHMVEKVNKYHRTQRRMTQALG 229
Query: 358 RAPTEAEISARSNLPVAKMRFLADASQSTVSLDMPIGKKSGGDPGCATLGSFI 516
R PT+ E++ +PV ++ L + SQ ++SL+ P+ GD ++LG F+
Sbjct: 230 REPTDEEVAEELGVPVEEVLRLQEISQRSISLETPV-----GDDESSSLGDFL 277
[167][TOP]
>UniRef100_B2V7P9 RNA polymerase sigma factor n=1 Tax=Sulfurihydrogenibium sp.
YO3AOP1 RepID=B2V7P9_SULSY
Length = 590
Score = 164 bits (414), Expect = 5e-39
Identities = 82/137 (59%), Positives = 103/137 (75%)
Frame = +1
Query: 58 KERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEKYDASKGFRFSTYATWWI 237
K+ +V ANLRLVVSIAKKY NRGL DLIQEG+IGL++ +KYD KGF+FSTYATWWI
Sbjct: 352 KQVLVKANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKYDYKKGFKFSTYATWWI 411
Query: 238 RQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAPTEAEISARSNLPVAKMR 417
RQAITRAIAD +R IR+PVH+ +T+ L + S+ L ELGR PT EI+ ++ +P K+R
Sbjct: 412 RQAITRAIADQARTIRIPVHMIETINKLLRISRTLVQELGREPTPEEIAKKAGMPADKVR 471
Query: 418 FLADASQSTVSLDMPIG 468
+ SQ VSL+ PIG
Sbjct: 472 KILRTSQDPVSLETPIG 488
[168][TOP]
>UniRef100_C6WAH7 RNA polymerase sigma factor n=1 Tax=Actinosynnema mirum DSM 43827
RepID=C6WAH7_ACTMD
Length = 330
Score = 164 bits (414), Expect = 5e-39
Identities = 87/164 (53%), Positives = 112/164 (68%)
Frame = +1
Query: 25 LRRQLRCGLRAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEKYDASKG 204
LR +R GLRAK ++ ANLRLVVS+AK+Y RG+ L DLIQEG++GLIR EK+D +KG
Sbjct: 83 LRALVRDGLRAKNHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAVEKFDYTKG 142
Query: 205 FRFSTYATWWIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAPTEAEIS 384
F+FSTYATWWIRQAITR +AD R IRLPVH+ + + L + + L +LGR T E++
Sbjct: 143 FKFSTYATWWIRQAITRGMADQGRTIRLPVHLVEQVNKLARIKRDLHQQLGREATNEELA 202
Query: 385 ARSNLPVAKMRFLADASQSTVSLDMPIGKKSGGDPGCATLGSFI 516
A S L K+ L D ++ VSLDMP+G + A LG FI
Sbjct: 203 AESGLSPTKVSDLLDHARDPVSLDMPVGAEED-----APLGDFI 241
[169][TOP]
>UniRef100_C4FHX0 RNA polymerase sigma factor n=1 Tax=Sulfurihydrogenibium
yellowstonense SS-5 RepID=C4FHX0_9AQUI
Length = 570
Score = 164 bits (414), Expect = 5e-39
Identities = 82/137 (59%), Positives = 103/137 (75%)
Frame = +1
Query: 58 KERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEKYDASKGFRFSTYATWWI 237
K+ +V ANLRLVVSIAKKY NRGL DLIQEG+IGL++ +KYD KGF+FSTYATWWI
Sbjct: 352 KQILVKANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKYDYKKGFKFSTYATWWI 411
Query: 238 RQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAPTEAEISARSNLPVAKMR 417
RQAITRAIAD +R IR+PVH+ +T+ L + S+ L ELGR PT EI+ ++ +P K+R
Sbjct: 412 RQAITRAIADQARTIRIPVHMIETINKLLRISRTLVQELGREPTPEEIAKKAGMPADKVR 471
Query: 418 FLADASQSTVSLDMPIG 468
+ SQ VSL+ PIG
Sbjct: 472 KILRTSQDPVSLETPIG 488
[170][TOP]
>UniRef100_C4CH81 RNA polymerase sigma factor n=1 Tax=Sphaerobacter thermophilus DSM
20745 RepID=C4CH81_9CHLR
Length = 538
Score = 164 bits (414), Expect = 5e-39
Identities = 84/154 (54%), Positives = 110/154 (71%)
Frame = +1
Query: 55 AKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEKYDASKGFRFSTYATWW 234
A++++ ANLRLVVS+AKKY RG+ + DL+QEG++GLIR EK+ KGF+FSTYATWW
Sbjct: 301 ARKKLTEANLRLVVSVAKKYGGRGMSMLDLVQEGNLGLIRAVEKFQHHKGFKFSTYATWW 360
Query: 235 IRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAPTEAEISARSNLPVAKM 414
IRQAITRAIAD +R IR+PVH+ + + L +TS+ L ELGR PT EI+A LP K+
Sbjct: 361 IRQAITRAIADQARTIRIPVHMVEQINRLIRTSRRLQQELGREPTSEEIAAEMGLPPDKV 420
Query: 415 RFLADASQSTVSLDMPIGKKSGGDPGCATLGSFI 516
R + SQ VSL+MPIG++ + LG FI
Sbjct: 421 REILKISQEPVSLEMPIGEEED-----SNLGDFI 449
[171][TOP]
>UniRef100_C2D7B9 RNA polymerase sigma factor n=1 Tax=Atopobium vaginae DSM 15829
RepID=C2D7B9_9ACTN
Length = 441
Score = 164 bits (414), Expect = 5e-39
Identities = 87/172 (50%), Positives = 117/172 (68%)
Frame = +1
Query: 1 VTDMDVAALRRQLRCGLRAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGA 180
+T + L R + GL AK+ + SANLRL VSIAK+Y+ RG+L DLIQEG++GLIR
Sbjct: 185 LTRAEQRRLMRIEQVGLDAKQALTSANLRLTVSIAKRYVGRGMLFLDLIQEGNLGLIRAV 244
Query: 181 EKYDASKGFRFSTYATWWIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGR 360
EK+D +KGF+FSTYATWWIRQAITRAIAD +R IR+PVH+ +T+ L + K L +LGR
Sbjct: 245 EKFDYTKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVRVQKELLQDLGR 304
Query: 361 APTEAEISARSNLPVAKMRFLADASQSTVSLDMPIGKKSGGDPGCATLGSFI 516
PT EI + + ++R + SQ VSL+ PIG++ ++LG FI
Sbjct: 305 EPTPEEIGEQMKMSADRVREIQKISQEPVSLETPIGEEED-----SSLGDFI 351
[172][TOP]
>UniRef100_UPI0001694293 RNA polymerase sigma factor RpoD n=1 Tax=Paenibacillus larvae
subsp. larvae BRL-230010 RepID=UPI0001694293
Length = 367
Score = 163 bits (413), Expect = 6e-39
Identities = 84/170 (49%), Positives = 118/170 (69%)
Frame = +1
Query: 7 DMDVAALRRQLRCGLRAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEK 186
D ++ +R + AK+R+ ANLRLVVSIA++Y+ RG+L DLIQEG++GL++ EK
Sbjct: 114 DDEIELAKRIMEGDEEAKQRLAEANLRLVVSIARRYVGRGMLFLDLIQEGNMGLMKAVEK 173
Query: 187 YDASKGFRFSTYATWWIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAP 366
+D +KG++FSTYATWWIRQAITRAIAD +R IR+PVH+ +T+ L + S+ L +ELGR P
Sbjct: 174 FDYTKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLLELGREP 233
Query: 367 TEAEISARSNLPVAKMRFLADASQSTVSLDMPIGKKSGGDPGCATLGSFI 516
T EI+ L K+R + SQ VSL+ PIG+++ + LG FI
Sbjct: 234 TPEEIAKEMELSTDKVREIMKISQEPVSLETPIGEEND-----SNLGDFI 278
[173][TOP]
>UniRef100_C6CTW1 RNA polymerase sigma factor n=1 Tax=Paenibacillus sp. JDR-2
RepID=C6CTW1_PAESJ
Length = 376
Score = 163 bits (413), Expect = 6e-39
Identities = 88/170 (51%), Positives = 114/170 (67%)
Frame = +1
Query: 7 DMDVAALRRQLRCGLRAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEK 186
D ++ RR AK R+ ANLRLVVSIAK+Y+ RG+L DLIQEG++GLI+ EK
Sbjct: 123 DDEIELARRIENGDEEAKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEK 182
Query: 187 YDASKGFRFSTYATWWIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAP 366
+D KGF+FSTYATWWIRQAITRAIAD +R IR+PVH+ +T+ L + S+ L ELGR P
Sbjct: 183 FDHQKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQELGREP 242
Query: 367 TEAEISARSNLPVAKMRFLADASQSTVSLDMPIGKKSGGDPGCATLGSFI 516
T EI+A L K+R + +Q VSL+ PIG++ + LG FI
Sbjct: 243 TPEEIAAEMELSTDKVREIMKIAQEPVSLETPIGEEDD-----SHLGDFI 287
[174][TOP]
>UniRef100_B9MQ36 RNA polymerase sigma factor n=1 Tax=Anaerocellum thermophilum DSM
6725 RepID=B9MQ36_ANATD
Length = 417
Score = 163 bits (413), Expect = 6e-39
Identities = 83/154 (53%), Positives = 111/154 (72%)
Frame = +1
Query: 55 AKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEKYDASKGFRFSTYATWW 234
AK+R+ ANLRLVVSIAK+Y+ RG+L DLIQEG++GL++ EK+D KG++FSTYATWW
Sbjct: 180 AKKRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLLKAVEKFDYRKGYKFSTYATWW 239
Query: 235 IRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAPTEAEISARSNLPVAKM 414
IRQAITRAIAD +R IR+PVH+ +T+ L + S+ L E GR PT EI+ N+PV K+
Sbjct: 240 IRQAITRAIADQARTIRIPVHMVETINKLVRVSRQLLQEKGREPTPEEIAKEMNMPVEKV 299
Query: 415 RFLADASQSTVSLDMPIGKKSGGDPGCATLGSFI 516
R + +Q VSL+ PIG++ + LG FI
Sbjct: 300 REILKIAQEPVSLETPIGEEED-----SHLGDFI 328
[175][TOP]
>UniRef100_A9B1B6 RNA polymerase sigma factor n=1 Tax=Herpetosiphon aurantiacus ATCC
23779 RepID=A9B1B6_HERA2
Length = 375
Score = 163 bits (413), Expect = 6e-39
Identities = 84/166 (50%), Positives = 115/166 (69%)
Frame = +1
Query: 19 AALRRQLRCGLRAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEKYDAS 198
A L++Q+ A++ ++ ANLRLVVSIAKKY+ RG+ DLIQEG+IGL+R EK+D
Sbjct: 125 ARLQQQVLESEAARQHLIQANLRLVVSIAKKYVGRGMSFLDLIQEGNIGLMRATEKFDYH 184
Query: 199 KGFRFSTYATWWIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAPTEAE 378
KGF+FSTYATWWIRQAITR+I+DHSR IRLPVHV +T+ +++T+ L L R P+ E
Sbjct: 185 KGFKFSTYATWWIRQAITRSISDHSRTIRLPVHVGETINRVKRTAHKLQQALEREPSAEE 244
Query: 379 ISARSNLPVAKMRFLADASQSTVSLDMPIGKKSGGDPGCATLGSFI 516
I LP K+R + + ++ VSL+ P+G + G + LG FI
Sbjct: 245 IGEALGLPADKVRRVLEVARQPVSLETPVGNE-----GDSVLGDFI 285
[176][TOP]
>UniRef100_A4XHW4 RNA polymerase sigma factor n=1 Tax=Caldicellulosiruptor
saccharolyticus DSM 8903 RepID=A4XHW4_CALS8
Length = 411
Score = 163 bits (413), Expect = 6e-39
Identities = 83/154 (53%), Positives = 111/154 (72%)
Frame = +1
Query: 55 AKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEKYDASKGFRFSTYATWW 234
AK+R+ ANLRLVVSIAK+Y+ RG+L DLIQEG++GL++ EK+D KG++FSTYATWW
Sbjct: 174 AKKRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLLKAVEKFDYRKGYKFSTYATWW 233
Query: 235 IRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAPTEAEISARSNLPVAKM 414
IRQAITRAIAD +R IR+PVH+ +T+ L + S+ L E GR PT EI+ N+PV K+
Sbjct: 234 IRQAITRAIADQARTIRIPVHMVETINKLVRVSRQLLQEKGREPTPEEIAKEMNMPVEKV 293
Query: 415 RFLADASQSTVSLDMPIGKKSGGDPGCATLGSFI 516
R + +Q VSL+ PIG++ + LG FI
Sbjct: 294 REILKIAQEPVSLETPIGEEED-----SHLGDFI 322
[177][TOP]
>UniRef100_Q84J00 RNA polymerase sigma factor (Fragment) n=1 Tax=Pleurocapsa sp. PCC
7327 RepID=Q84J00_9CYAN
Length = 188
Score = 163 bits (413), Expect = 6e-39
Identities = 80/141 (56%), Positives = 106/141 (75%)
Frame = +1
Query: 115 LNRGLLLQDLIQEGSIGLIRGAEKYDASKGFRFSTYATWWIRQAITRAIADHSRPIRLPV 294
+NRGL QDLIQEGS+GLIR AEK+D KG++FSTYATWWIRQAITRAIAD SR IRLPV
Sbjct: 1 MNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPV 60
Query: 295 HVNDTLAALRKTSKLLSVELGRAPTEAEISARSNLPVAKMRFLADASQSTVSLDMPIGKK 474
H+ +T++ ++KT+K+LS E+ R PTE EI+ R + + K+RF+A ++Q +SL+ PIGK+
Sbjct: 61 HLYETISRIKKTTKILSQEMRRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKE 120
Query: 475 SGGDPGCATLGSFIVWSGDDP 537
+ LG FI G+ P
Sbjct: 121 ED-----SRLGDFIEADGETP 136
[178][TOP]
>UniRef100_C8W713 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1 Tax=Atopobium
parvulum DSM 20469 RepID=C8W713_ATOPD
Length = 455
Score = 163 bits (413), Expect = 6e-39
Identities = 87/173 (50%), Positives = 120/173 (69%), Gaps = 3/173 (1%)
Frame = +1
Query: 7 DMDVAALRRQLRC---GLRAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRG 177
+++ A RR +R GL AK++++SANLRLVVSIAK+Y+ RG+L DLIQEG++GLIR
Sbjct: 198 ELNRAEQRRLMRIESVGLDAKQQLISANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIRA 257
Query: 178 AEKYDASKGFRFSTYATWWIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELG 357
EK+D +KGF+FSTYATWWIRQAITRAIAD +R IR+PVH+ +T+ L + + L + G
Sbjct: 258 VEKFDYTKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDFG 317
Query: 358 RAPTEAEISARSNLPVAKMRFLADASQSTVSLDMPIGKKSGGDPGCATLGSFI 516
R PT EI + + ++R + SQ VSL+ PIG++ + LG FI
Sbjct: 318 RDPTPEEIGSEMGMSPDRVREIQKISQEPVSLETPIGEEED-----SQLGDFI 365
[179][TOP]
>UniRef100_C4CIZ0 RNA polymerase sigma factor n=1 Tax=Sphaerobacter thermophilus DSM
20745 RepID=C4CIZ0_9CHLR
Length = 390
Score = 163 bits (413), Expect = 6e-39
Identities = 83/157 (52%), Positives = 113/157 (71%)
Frame = +1
Query: 46 GLRAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEKYDASKGFRFSTYA 225
G +A+ ++ ANLRLVVS+AKKY+ RGL DLIQEG+IGL++ +K+D +GF+FSTYA
Sbjct: 150 GEKARAHLIQANLRLVVSVAKKYVGRGLSFLDLIQEGNIGLMKATDKFDYKRGFKFSTYA 209
Query: 226 TWWIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAPTEAEISARSNLPV 405
TWWIRQAITRAI+D SR IRLPVHV +T+ ++KTS+ L R PT E++ ++P
Sbjct: 210 TWWIRQAITRAISDQSRTIRLPVHVGETINRVKKTSQRLQQIFEREPTFEEVARAMDIPE 269
Query: 406 AKMRFLADASQSTVSLDMPIGKKSGGDPGCATLGSFI 516
K+R + DAS+ VSL+ P+G++ G A LG FI
Sbjct: 270 EKVRQVLDASRHPVSLEAPVGQE-----GDAFLGDFI 301
[180][TOP]
>UniRef100_C2APA0 RNA polymerase sigma factor n=1 Tax=Tsukamurella paurometabola DSM
20162 RepID=C2APA0_TSUPA
Length = 330
Score = 163 bits (413), Expect = 6e-39
Identities = 85/160 (53%), Positives = 112/160 (70%)
Frame = +1
Query: 37 LRCGLRAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEKYDASKGFRFS 216
+R G A++ ++ ANLRLVVS+AK+Y RG+ L DLIQEG++GLIR EK+D +KGF+FS
Sbjct: 87 VRDGQAARQHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYAKGFKFS 146
Query: 217 TYATWWIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAPTEAEISARSN 396
TYATWWIRQAITR +AD SR IRLPVH+ + + L + + L +LGR T+AE++A S
Sbjct: 147 TYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIRRELHQQLGREATDAELAAESG 206
Query: 397 LPVAKMRFLADASQSTVSLDMPIGKKSGGDPGCATLGSFI 516
+P K+ L D S+ VSLDMP+G A LG FI
Sbjct: 207 IPAEKIADLMDHSRDPVSLDMPVGSDEE-----APLGDFI 241
[181][TOP]
>UniRef100_B6WQF4 RNA polymerase sigma factor n=1 Tax=Desulfovibrio piger ATCC 29098
RepID=B6WQF4_9DELT
Length = 589
Score = 163 bits (413), Expect = 6e-39
Identities = 83/164 (50%), Positives = 116/164 (70%)
Frame = +1
Query: 25 LRRQLRCGLRAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEKYDASKG 204
++R +RAK+ ++ +NLRLVVSIAKKY NRGL DLIQEG+IGL++ +K++ +G
Sbjct: 341 IKRGNTAAMRAKQELIRSNLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYQRG 400
Query: 205 FRFSTYATWWIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAPTEAEIS 384
++FSTYATWWIRQAITRAIAD +R IR+PVH+ +T+ L +TS+ L ELGR PT EI+
Sbjct: 401 YKFSTYATWWIRQAITRAIADQARTIRIPVHMIETINKLIRTSRYLVQELGRDPTPEEIA 460
Query: 385 ARSNLPVAKMRFLADASQSTVSLDMPIGKKSGGDPGCATLGSFI 516
R PV K++ + ++ +SL+ PI GD ++LG FI
Sbjct: 461 ERMEYPVEKVKKVLKIAKEPISLETPI-----GDEEDSSLGDFI 499
[182][TOP]
>UniRef100_B6FR93 RNA polymerase sigma factor n=1 Tax=Clostridium nexile DSM 1787
RepID=B6FR93_9CLOT
Length = 370
Score = 163 bits (413), Expect = 6e-39
Identities = 84/154 (54%), Positives = 111/154 (72%)
Frame = +1
Query: 55 AKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEKYDASKGFRFSTYATWW 234
AK+R+ ANLRLVVSIAK+Y+ RG+L DLIQEG++GLI+ EK+D KGF+FSTYATWW
Sbjct: 133 AKKRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDYQKGFKFSTYATWW 192
Query: 235 IRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAPTEAEISARSNLPVAKM 414
IRQAITRAIAD +R IR+PVH+ +T+ L + S+ L ELGR P EI+ ++PV ++
Sbjct: 193 IRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQELGREPLPEEIAEELDMPVERV 252
Query: 415 RFLADASQSTVSLDMPIGKKSGGDPGCATLGSFI 516
R + SQ VSL+ PIG++ + LG FI
Sbjct: 253 REILKISQEPVSLETPIGEEED-----SHLGDFI 281
[183][TOP]
>UniRef100_Q8S9C8 RNA polymerase sigma factor n=1 Tax=Cyanophora paradoxa
RepID=Q8S9C8_CYAPA
Length = 427
Score = 163 bits (413), Expect = 6e-39
Identities = 82/166 (49%), Positives = 115/166 (69%), Gaps = 1/166 (0%)
Frame = +1
Query: 22 ALRRQLRCGLRAKERMVSANLRLVVSIAKKYLNRGLL-LQDLIQEGSIGLIRGAEKYDAS 198
A + ++ G RA+ R+V +NLR VVSIAKKY N+ + LQDLIQEGSIGL++ AE++D
Sbjct: 167 AFQSRILKGRRARARLVQSNLRWVVSIAKKYANKHTMPLQDLIQEGSIGLMKAAERFDLD 226
Query: 199 KGFRFSTYATWWIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAPTEAE 378
KGF+F TYATWWIRQAI R++ D R IRLPVHV+D+L ++KT + L+ LGR PT E
Sbjct: 227 KGFKFLTYATWWIRQAIFRSLQDQGRTIRLPVHVHDSLYLIKKTRQQLASRLGRIPTPEE 286
Query: 379 ISARSNLPVAKMRFLADASQSTVSLDMPIGKKSGGDPGCATLGSFI 516
++ N+PV+++ F+ A+ +SL+ PI ++ LG FI
Sbjct: 287 LADELNIPVSRLAFITQAASLPISLESPISSETSSTKARNNLGDFI 332
[184][TOP]
>UniRef100_UPI0001789970 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1
Tax=Geobacillus sp. Y412MC10 RepID=UPI0001789970
Length = 377
Score = 163 bits (412), Expect = 8e-39
Identities = 85/154 (55%), Positives = 110/154 (71%)
Frame = +1
Query: 55 AKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEKYDASKGFRFSTYATWW 234
AK R+ ANLRLVVSIAK+Y+ RG+L DLIQEG++GLI+ EK+D KGF+FSTYATWW
Sbjct: 140 AKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDYKKGFKFSTYATWW 199
Query: 235 IRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAPTEAEISARSNLPVAKM 414
IRQAITRAIAD +R IR+PVH+ +T+ L + S+ L ELGR P+ EI+A L V K+
Sbjct: 200 IRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQELGREPSPEEIAAEMELSVEKV 259
Query: 415 RFLADASQSTVSLDMPIGKKSGGDPGCATLGSFI 516
R + +Q VSL+ PIG++ + LG FI
Sbjct: 260 REIMKIAQEPVSLETPIGEEDD-----SHLGDFI 288
[185][TOP]
>UniRef100_Q30ZP7 RNA polymerase sigma factor n=1 Tax=Desulfovibrio desulfuricans
subsp. desulfuricans str. G20 RepID=Q30ZP7_DESDG
Length = 589
Score = 163 bits (412), Expect = 8e-39
Identities = 85/174 (48%), Positives = 122/174 (70%), Gaps = 2/174 (1%)
Frame = +1
Query: 1 VTDMDVAA--LRRQLRCGLRAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIR 174
VTD++ ++R +RAK+ ++ +NLRLVVSIAKKY NRGL DLIQEG+IGL++
Sbjct: 331 VTDLEEVLWRIKRGNSHAMRAKQELIRSNLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMK 390
Query: 175 GAEKYDASKGFRFSTYATWWIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVEL 354
+K++ +G++FSTYATWWIRQAITRAIAD +R IR+PVH+ +T+ L +TS+ L EL
Sbjct: 391 AVDKFEYQRGYKFSTYATWWIRQAITRAIADQARTIRIPVHMIETINKLIRTSRYLVQEL 450
Query: 355 GRAPTEAEISARSNLPVAKMRFLADASQSTVSLDMPIGKKSGGDPGCATLGSFI 516
GR PT EI+ R + P+ K++ + ++ +SL+ PI GD ++LG FI
Sbjct: 451 GRDPTPEEIAERMDYPIDKVKKVLKIAKEPISLETPI-----GDEEDSSLGDFI 499
[186][TOP]
>UniRef100_B8DKM2 RNA polymerase sigma factor n=1 Tax=Desulfovibrio vulgaris str.
'Miyazaki F' RepID=B8DKM2_DESVM
Length = 590
Score = 163 bits (412), Expect = 8e-39
Identities = 85/174 (48%), Positives = 122/174 (70%), Gaps = 2/174 (1%)
Frame = +1
Query: 1 VTDMDVAA--LRRQLRCGLRAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIR 174
VTD++ ++R +RAK+ ++ +NLRLVVSIAKKY NRGL DLIQEG+IGL++
Sbjct: 332 VTDLEEVLWRIKRGNTHAMRAKQELIRSNLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMK 391
Query: 175 GAEKYDASKGFRFSTYATWWIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVEL 354
+K++ +G++FSTYATWWIRQAITRAIAD +R IR+PVH+ +T+ L +TS+ L EL
Sbjct: 392 AVDKFEYQRGYKFSTYATWWIRQAITRAIADQARTIRIPVHMIETINKLIRTSRYLVQEL 451
Query: 355 GRAPTEAEISARSNLPVAKMRFLADASQSTVSLDMPIGKKSGGDPGCATLGSFI 516
GR PT EI+ R + P+ K++ + ++ +SL+ PI GD ++LG FI
Sbjct: 452 GRDPTPEEIAERMDYPIDKVKKVLKIAKEPISLETPI-----GDEEDSSLGDFI 500
[187][TOP]
>UniRef100_B2UM02 RNA polymerase sigma factor n=1 Tax=Akkermansia muciniphila ATCC
BAA-835 RepID=B2UM02_AKKM8
Length = 688
Score = 163 bits (412), Expect = 8e-39
Identities = 84/164 (51%), Positives = 112/164 (68%)
Frame = +1
Query: 25 LRRQLRCGLRAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEKYDASKG 204
LR+ LR RAK+ MV ANLRLV+SIAKKY NRGL DLIQEG++GL++ EK++ +G
Sbjct: 437 LRKWLREARRAKDEMVEANLRLVISIAKKYTNRGLSFLDLIQEGNMGLMKAVEKFEYRRG 496
Query: 205 FRFSTYATWWIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAPTEAEIS 384
++FSTYATWWIRQAITR+IAD +R IR+PVH+ +T+ L + K L E GR PT EI+
Sbjct: 497 YKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLMRVQKQLVQEYGREPTPEEIA 556
Query: 385 ARSNLPVAKMRFLADASQSTVSLDMPIGKKSGGDPGCATLGSFI 516
+LPV ++R + +Q +SL P+ GD + G FI
Sbjct: 557 EEIHLPVERVRSVLKMAQQPISLQAPV-----GDSDDTSFGDFI 595
[188][TOP]
>UniRef100_Q59824 RNA polymerase sigma factor n=1 Tax=Stigmatella aurantiaca
RepID=Q59824_STIAU
Length = 706
Score = 163 bits (412), Expect = 8e-39
Identities = 85/165 (51%), Positives = 116/165 (70%)
Frame = +1
Query: 22 ALRRQLRCGLRAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEKYDASK 201
A+R R RAK +V ANLRLVVSIAKKY NRGL DLIQEG+IGL++ +K++ +
Sbjct: 457 AIRLGERRAERAKSELVEANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYKR 516
Query: 202 GFRFSTYATWWIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAPTEAEI 381
G++FSTYATWWIRQAITRAIAD +R IR+PVH+ +T+ L +TS+ L E+GR PT EI
Sbjct: 517 GYKFSTYATWWIRQAITRAIADQARTIRIPVHMIETINKLIRTSRYLVQEIGREPTPEEI 576
Query: 382 SARSNLPVAKMRFLADASQSTVSLDMPIGKKSGGDPGCATLGSFI 516
+ + LP+ K+R + ++ +SL+ PIG++ + LG FI
Sbjct: 577 AEKMELPLDKVRKVLKIAKEPISLETPIGEEED-----SHLGDFI 616
[189][TOP]
>UniRef100_Q091D4 RNA polymerase sigma factor n=1 Tax=Stigmatella aurantiaca DW4/3-1
RepID=Q091D4_STIAU
Length = 706
Score = 163 bits (412), Expect = 8e-39
Identities = 85/165 (51%), Positives = 116/165 (70%)
Frame = +1
Query: 22 ALRRQLRCGLRAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEKYDASK 201
A+R R RAK +V ANLRLVVSIAKKY NRGL DLIQEG+IGL++ +K++ +
Sbjct: 457 AIRLGERRAERAKSELVEANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYKR 516
Query: 202 GFRFSTYATWWIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAPTEAEI 381
G++FSTYATWWIRQAITRAIAD +R IR+PVH+ +T+ L +TS+ L E+GR PT EI
Sbjct: 517 GYKFSTYATWWIRQAITRAIADQARTIRIPVHMIETINKLIRTSRYLVQEIGREPTPEEI 576
Query: 382 SARSNLPVAKMRFLADASQSTVSLDMPIGKKSGGDPGCATLGSFI 516
+ + LP+ K+R + ++ +SL+ PIG++ + LG FI
Sbjct: 577 AEKMELPLDKVRKVLKIAKEPISLETPIGEEED-----SHLGDFI 616
[190][TOP]
>UniRef100_Q3AV74 RNA polymerase sigma factor n=2 Tax=Synechococcus
RepID=Q3AV74_SYNS9
Length = 313
Score = 163 bits (412), Expect = 8e-39
Identities = 88/169 (52%), Positives = 115/169 (68%)
Frame = +1
Query: 28 RRQLRCGLRAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEKYDASKGF 207
RR LR G RAKERM+ ANLRLVVS+AKKY +GL L DLIQEGS+GL R EK+D ++G+
Sbjct: 69 RRMLRIGRRAKERMMKANLRLVVSVAKKYQGKGLELLDLIQEGSLGLERAVEKFDPTRGY 128
Query: 208 RFSTYATWWIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAPTEAEISA 387
+FSTYA WWIRQ++TRAIA SR IRLPVH+++ L +RK S L+ +LG P EI+
Sbjct: 129 KFSTYAFWWIRQSMTRAIACQSRTIRLPVHLSERLTTIRKVSLDLAHKLGAMPNRLEIAE 188
Query: 388 RSNLPVAKMRFLADASQSTVSLDMPIGKKSGGDPGCATLGSFIVWSGDD 534
++PV ++ L + +T SLD P+ G+ G + LG I S D
Sbjct: 189 AMDIPVEELDSLLRQALTTSSLDAPV----NGEEGRSFLGDLIADSSAD 233
[191][TOP]
>UniRef100_C6J365 RNA polymerase sigma factor n=1 Tax=Paenibacillus sp. oral taxon
786 str. D14 RepID=C6J365_9BACL
Length = 374
Score = 163 bits (412), Expect = 8e-39
Identities = 85/154 (55%), Positives = 110/154 (71%)
Frame = +1
Query: 55 AKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEKYDASKGFRFSTYATWW 234
AK R+ ANLRLVVSIAK+Y+ RG+L DLIQEG++GLI+ EK+D KGF+FSTYATWW
Sbjct: 137 AKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDHKKGFKFSTYATWW 196
Query: 235 IRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAPTEAEISARSNLPVAKM 414
IRQAITRAIAD +R IR+PVH+ +T+ L + S+ L ELGR P EI+A +L V K+
Sbjct: 197 IRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQELGREPAPEEIAAEMDLSVEKV 256
Query: 415 RFLADASQSTVSLDMPIGKKSGGDPGCATLGSFI 516
R + +Q VSL+ PIG++ + LG FI
Sbjct: 257 REIMKIAQEPVSLETPIGEEDD-----SHLGDFI 285
[192][TOP]
>UniRef100_A3Z2L2 RNA polymerase sigma factor (Fragment) n=1 Tax=Synechococcus sp. WH
5701 RepID=A3Z2L2_9SYNE
Length = 215
Score = 163 bits (412), Expect = 8e-39
Identities = 88/169 (52%), Positives = 115/169 (68%)
Frame = +1
Query: 28 RRQLRCGLRAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEKYDASKGF 207
RR LR G RAKERM+ ANLRLVVS+AKKY +GL L DLIQEGS+GL R EK+D ++G+
Sbjct: 22 RRMLRIGRRAKERMMKANLRLVVSVAKKYQGKGLELLDLIQEGSLGLERAVEKFDPTRGY 81
Query: 208 RFSTYATWWIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAPTEAEISA 387
+FSTYA WWIRQ++TRAIA SR IRLPVH+++ L +RK S L+ +LG P EI+
Sbjct: 82 KFSTYAFWWIRQSMTRAIACQSRTIRLPVHLSERLTTIRKVSLDLAHKLGAMPNRLEIAE 141
Query: 388 RSNLPVAKMRFLADASQSTVSLDMPIGKKSGGDPGCATLGSFIVWSGDD 534
++PV ++ L + +T SLD P+ G+ G + LG I S D
Sbjct: 142 AMDIPVEELDSLLRQALTTSSLDAPV----NGEEGRSFLGDLIADSSAD 186
[193][TOP]
>UniRef100_P17531 RNA polymerase sigma factor rpoD n=2 Tax=Myxococcus xanthus
RepID=RPOD_MYXXA
Length = 708
Score = 163 bits (412), Expect = 8e-39
Identities = 85/165 (51%), Positives = 116/165 (70%)
Frame = +1
Query: 22 ALRRQLRCGLRAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEKYDASK 201
A+R R RAK +V ANLRLVVSIAKKY NRGL DLIQEG+IGL++ +K++ +
Sbjct: 459 AIRLGERRAERAKSELVEANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYKR 518
Query: 202 GFRFSTYATWWIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAPTEAEI 381
G++FSTYATWWIRQAITRAIAD +R IR+PVH+ +T+ L +TS+ L E+GR PT EI
Sbjct: 519 GYKFSTYATWWIRQAITRAIADQARTIRIPVHMIETINKLIRTSRYLVQEIGREPTPEEI 578
Query: 382 SARSNLPVAKMRFLADASQSTVSLDMPIGKKSGGDPGCATLGSFI 516
+ + LP+ K+R + ++ +SL+ PIG++ + LG FI
Sbjct: 579 AEKMELPLDKVRKVLKIAKEPISLETPIGEEED-----SHLGDFI 618
[194][TOP]
>UniRef100_Q31ME3 RNA polymerase sigma factor rpoD2 n=1 Tax=Synechococcus elongatus
PCC 7942 RepID=RPOD2_SYNE7
Length = 320
Score = 163 bits (412), Expect = 8e-39
Identities = 82/154 (53%), Positives = 111/154 (72%)
Frame = +1
Query: 7 DMDVAALRRQLRCGLRAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEK 186
D+++ L RQ+ G RAK +M+ ANLRLVVSIAKKY R + DLIQEG++GL RG EK
Sbjct: 69 DLNLEDLDRQIEQGQRAKRKMIEANLRLVVSIAKKYQKRHMEFLDLIQEGTLGLERGVEK 128
Query: 187 YDASKGFRFSTYATWWIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAP 366
+D SKG++FSTYA WWIRQAITRAIA SR IRLP+H+ + L L+KT + LS +LGR+
Sbjct: 129 FDPSKGYKFSTYAYWWIRQAITRAIAQQSRTIRLPIHITEKLNKLKKTQRELSQQLGRSA 188
Query: 367 TEAEISARSNLPVAKMRFLADASQSTVSLDMPIG 468
T +E++ LP+ ++R ++ VSLD+ +G
Sbjct: 189 TASELAEVLELPLEQVREYIQMNRQPVSLDVKVG 222
[195][TOP]
>UniRef100_Q896X6 RNA polymerase sigma factor n=1 Tax=Clostridium tetani
RepID=Q896X6_CLOTE
Length = 282
Score = 162 bits (411), Expect = 1e-38
Identities = 74/140 (52%), Positives = 106/140 (75%)
Frame = +1
Query: 52 RAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEKYDASKGFRFSTYATW 231
RAK ++ +NLRLVVSIAKKY+ RGL DL+QEG++GL++ +KYD KG+RFSTYATW
Sbjct: 44 RAKSELIKSNLRLVVSIAKKYIGRGLSFLDLVQEGNLGLMKAVDKYDYKKGYRFSTYATW 103
Query: 232 WIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAPTEAEISARSNLPVAK 411
WI+QA+TR+IAD SR IR+PVH+N+ ++ + +T K L EL R PTE EI+ + + + K
Sbjct: 104 WIKQAVTRSIADQSRTIRIPVHMNEVISKMIRTKKKLEQELDREPTEEEIAETAEISIEK 163
Query: 412 MRFLADASQSTVSLDMPIGK 471
++ + + SQ VSL+ P+G+
Sbjct: 164 IKRIYNVSQDPVSLETPVGE 183
[196][TOP]
>UniRef100_Q5YT68 RNA polymerase sigma factor n=1 Tax=Nocardia farcinica
RepID=Q5YT68_NOCFA
Length = 322
Score = 162 bits (411), Expect = 1e-38
Identities = 85/160 (53%), Positives = 111/160 (69%)
Frame = +1
Query: 37 LRCGLRAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEKYDASKGFRFS 216
+R G A+ ++ ANLRLVVS+AK+Y RG+ L DLIQEG++GLIR EK+D +KGF+FS
Sbjct: 79 VRDGQAARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYTKGFKFS 138
Query: 217 TYATWWIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAPTEAEISARSN 396
TYATWWIRQAITR +AD SR IRLPVH+ + + L + + L +LGR T+ E++A S
Sbjct: 139 TYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRELHQQLGREATDEELAAESG 198
Query: 397 LPVAKMRFLADASQSTVSLDMPIGKKSGGDPGCATLGSFI 516
+PV K+ L D S+ VSLDMP+G A LG FI
Sbjct: 199 IPVEKIADLLDHSRDPVSLDMPVGNDEE-----APLGDFI 233
[197][TOP]
>UniRef100_C6BSX0 RNA polymerase sigma factor n=1 Tax=Desulfovibrio salexigens DSM
2638 RepID=C6BSX0_DESAD
Length = 585
Score = 162 bits (411), Expect = 1e-38
Identities = 82/159 (51%), Positives = 115/159 (72%)
Frame = +1
Query: 40 RCGLRAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEKYDASKGFRFST 219
R +RAK+ ++ ANLRLVVSIAKKY NRGL DLIQEG+IGL++ +K++ +G++FST
Sbjct: 342 RSAMRAKQELIRANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYQRGYKFST 401
Query: 220 YATWWIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAPTEAEISARSNL 399
YATWWIRQAITRAIAD +R IR+PVH+ +T+ L +TS+ L ELGR P+ EI+ R +
Sbjct: 402 YATWWIRQAITRAIADQARTIRIPVHMIETINKLIRTSRYLVQELGRDPSPEEIAERMDY 461
Query: 400 PVAKMRFLADASQSTVSLDMPIGKKSGGDPGCATLGSFI 516
P+ K++ + ++ +SL+ PI GD ++LG FI
Sbjct: 462 PLEKVKKVLKIAKEPISLETPI-----GDEEDSSLGDFI 495
[198][TOP]
>UniRef100_C4Z4Y6 RNA polymerase sigma factor n=1 Tax=Eubacterium eligens ATCC 27750
RepID=C4Z4Y6_EUBE2
Length = 434
Score = 162 bits (411), Expect = 1e-38
Identities = 85/170 (50%), Positives = 115/170 (67%)
Frame = +1
Query: 7 DMDVAALRRQLRCGLRAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEK 186
D ++ +R AK+R+ ANLRLVVSIAK+Y+ RG+ DLIQEG++GLI+ EK
Sbjct: 181 DEEIEYAKRMEEGDEEAKKRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNLGLIKAVEK 240
Query: 187 YDASKGFRFSTYATWWIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAP 366
YD KGF+FSTYATWWIRQAITRAIAD +R IR+PVH+ +T+ L + + L ELGR P
Sbjct: 241 YDYRKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVRVQRQLLQELGREP 300
Query: 367 TEAEISARSNLPVAKMRFLADASQSTVSLDMPIGKKSGGDPGCATLGSFI 516
+ EI+ ++PV ++R + SQ VSL+ PIG++ + LG FI
Sbjct: 301 SPEEIAENMDIPVERVREIQKISQEPVSLETPIGEEED-----SHLGDFI 345
[199][TOP]
>UniRef100_C4XS39 RNA polymerase sigma factor n=1 Tax=Desulfovibrio magneticus RS-1
RepID=C4XS39_DESMR
Length = 588
Score = 162 bits (411), Expect = 1e-38
Identities = 83/164 (50%), Positives = 116/164 (70%)
Frame = +1
Query: 25 LRRQLRCGLRAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEKYDASKG 204
++R RAK+ ++ ANLRLVVSIAKKY NRGL DLIQEG+IGL++ +K++ +G
Sbjct: 340 IKRGNNAAQRAKQELIRANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYQRG 399
Query: 205 FRFSTYATWWIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAPTEAEIS 384
++FSTYATWWIRQAITRAIAD +R IR+PVH+ +T+ L +TS+ L ELGR PT EI+
Sbjct: 400 YKFSTYATWWIRQAITRAIADQARTIRIPVHMIETINKLIRTSRYLVQELGRDPTPEEIA 459
Query: 385 ARSNLPVAKMRFLADASQSTVSLDMPIGKKSGGDPGCATLGSFI 516
R + P+ K++ + ++ +SL+ PI GD ++LG FI
Sbjct: 460 ERMDYPLEKVKKVLKIAKEPISLETPI-----GDEEDSSLGDFI 498
[200][TOP]
>UniRef100_A9F3S6 RNA polymerase sigma factor n=1 Tax=Sorangium cellulosum 'So ce 56'
RepID=A9F3S6_SORC5
Length = 639
Score = 162 bits (411), Expect = 1e-38
Identities = 88/177 (49%), Positives = 120/177 (67%), Gaps = 7/177 (3%)
Frame = +1
Query: 7 DMDVAALRRQL-------RCGLRAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIG 165
++DVAA+R R RAK +V ANLRLVVSIAKKY NRGL DLIQEG+IG
Sbjct: 378 NIDVAAIRDTYENIREGERMAERAKAELVEANLRLVVSIAKKYTNRGLQFLDLIQEGNIG 437
Query: 166 LIRGAEKYDASKGFRFSTYATWWIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLS 345
L++ +K++ +G++FSTYATWWIRQAITRAIAD +R IR+PVH+ +T+ L +TS+ L
Sbjct: 438 LMKAVDKFEYKRGYKFSTYATWWIRQAITRAIADQARTIRIPVHMIETINKLIRTSRYLV 497
Query: 346 VELGRAPTEAEISARSNLPVAKMRFLADASQSTVSLDMPIGKKSGGDPGCATLGSFI 516
E GR PT EI+ + LP+ K+R + ++ +SL+ PIG++ + LG FI
Sbjct: 498 QEYGREPTPEEIAEKMELPLDKVRKVLKIAKEPISLETPIGEEED-----SHLGDFI 549
[201][TOP]
>UniRef100_A9BD74 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
MIT 9211 RepID=A9BD74_PROM4
Length = 335
Score = 162 bits (411), Expect = 1e-38
Identities = 82/155 (52%), Positives = 113/155 (72%)
Frame = +1
Query: 10 MDVAALRRQLRCGLRAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEKY 189
+ V AL+++ R G RAKERMV+ANLRLVVSIAKKY R + L DLIQEG+IGL+RG EK+
Sbjct: 85 LTVGALKKKFRLGERAKERMVAANLRLVVSIAKKYTKRNMELLDLIQEGTIGLVRGVEKF 144
Query: 190 DASKGFRFSTYATWWIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAPT 369
D ++G++FSTYA WWIRQ ITRAIA+ SR IRLP+H+ + L L+K + LS +L R P+
Sbjct: 145 DPARGYKFSTYAYWWIRQGITRAIAEKSRAIRLPIHITEMLNKLKKGQRDLSQQLSRTPS 204
Query: 370 EAEISARSNLPVAKMRFLADASQSTVSLDMPIGKK 474
AE++ ++ +++ L + VSL+M +G K
Sbjct: 205 VAELAEYIDVSEEEVKDLMLKASQPVSLEMKVGDK 239
[202][TOP]
>UniRef100_A1VD72 RNA polymerase sigma factor n=3 Tax=Desulfovibrio vulgaris
RepID=A1VD72_DESVV
Length = 590
Score = 162 bits (411), Expect = 1e-38
Identities = 82/164 (50%), Positives = 117/164 (71%)
Frame = +1
Query: 25 LRRQLRCGLRAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEKYDASKG 204
++R +RAK+ ++ +NLRLVVSIAKKY NRGL DLIQEG+IGL++ +K++ +G
Sbjct: 342 IKRGNSIAMRAKQELIRSNLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYQRG 401
Query: 205 FRFSTYATWWIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAPTEAEIS 384
++FSTYATWWIRQAITRAIAD +R IR+PVH+ +T+ L +TS+ L ELGR PT EI+
Sbjct: 402 YKFSTYATWWIRQAITRAIADQARTIRIPVHMIETINKLIRTSRYLVQELGRDPTPEEIA 461
Query: 385 ARSNLPVAKMRFLADASQSTVSLDMPIGKKSGGDPGCATLGSFI 516
R + P+ K++ + ++ +SL+ PI GD ++LG FI
Sbjct: 462 ERMDYPIDKVKKVLKIAKEPISLETPI-----GDEEDSSLGDFI 500
[203][TOP]
>UniRef100_C4EHY7 RNA polymerase sigma factor n=1 Tax=Streptosporangium roseum DSM
43021 RepID=C4EHY7_STRRS
Length = 367
Score = 162 bits (411), Expect = 1e-38
Identities = 82/157 (52%), Positives = 112/157 (71%)
Frame = +1
Query: 46 GLRAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEKYDASKGFRFSTYA 225
G RAK+R++ ANLRLVVSIAK+Y+ RG+L DLIQEG++GLIR EK+D +KG++FSTYA
Sbjct: 128 GTRAKQRLIEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 187
Query: 226 TWWIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAPTEAEISARSNLPV 405
TWWIRQAITRAIAD +R IR+PVH+ +T+ L + + L +LGR P EI+ +LP+
Sbjct: 188 TWWIRQAITRAIADQARTIRIPVHMVETINKLVRVQRQLHQDLGREPAPEEIALEMDLPI 247
Query: 406 AKMRFLADASQSTVSLDMPIGKKSGGDPGCATLGSFI 516
++ + +Q VSL PIG++ + LG FI
Sbjct: 248 DRVIEIQRIAQEPVSLQSPIGEED------SDLGDFI 278
[204][TOP]
>UniRef100_B0PFC0 RNA polymerase sigma factor n=1 Tax=Anaerotruncus colihominis DSM
17241 RepID=B0PFC0_9FIRM
Length = 361
Score = 162 bits (411), Expect = 1e-38
Identities = 85/170 (50%), Positives = 118/170 (69%)
Frame = +1
Query: 7 DMDVAALRRQLRCGLRAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEK 186
D ++ R + + A++R+ ANLRLVVSIAK+Y+ RG+ DLIQEG++GLI+ EK
Sbjct: 108 DEEIDLAVRMAQGDIDARKRLSEANLRLVVSIAKRYVGRGMQFLDLIQEGNLGLIKAVEK 167
Query: 187 YDASKGFRFSTYATWWIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAP 366
+D +KGF+FSTYATWWIRQAITRAIAD +R IR+PVH+ +T+ ++K S LL + G P
Sbjct: 168 FDHTKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKVKKVSSLLLHKNGHEP 227
Query: 367 TEAEISARSNLPVAKMRFLADASQSTVSLDMPIGKKSGGDPGCATLGSFI 516
T EISA ++PV K+R + +Q VSL+ PIG++ + LG FI
Sbjct: 228 TAEEISAELDMPVDKVREIMRVAQEPVSLETPIGEEED-----SHLGDFI 272
[205][TOP]
>UniRef100_Q5MZI5 Group2 RNA polymerase sigma factor RpoD2 n=1 Tax=Synechococcus
elongatus PCC 6301 RepID=Q5MZI5_SYNP6
Length = 320
Score = 162 bits (410), Expect = 1e-38
Identities = 82/154 (53%), Positives = 111/154 (72%)
Frame = +1
Query: 7 DMDVAALRRQLRCGLRAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEK 186
D+++ L RQ+ G RAK +M+ ANLRLVVSIAKKY R + DLIQEG++GL RG EK
Sbjct: 69 DLNLEDLDRQIEQGQRAKRKMIEANLRLVVSIAKKYQKRHMEFLDLIQEGTLGLERGFEK 128
Query: 187 YDASKGFRFSTYATWWIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAP 366
+D SKG++FSTYA WWIRQAITRAIA SR IRLP+H+ + L L+KT + LS +LGR+
Sbjct: 129 FDPSKGYKFSTYAYWWIRQAITRAIAQQSRTIRLPIHITEKLNKLKKTQRELSQQLGRSA 188
Query: 367 TEAEISARSNLPVAKMRFLADASQSTVSLDMPIG 468
T +E++ LP+ ++R ++ VSLD+ +G
Sbjct: 189 TASELAEVLELPLEQVREYIQMNRQPVSLDVKVG 222
[206][TOP]
>UniRef100_Q46II1 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
NATL2A RepID=Q46II1_PROMT
Length = 335
Score = 162 bits (410), Expect = 1e-38
Identities = 82/148 (55%), Positives = 107/148 (72%)
Frame = +1
Query: 25 LRRQLRCGLRAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEKYDASKG 204
L+++L+ G RAKERMV+ANLRLVVS+AKKY R + L DLIQEG+IGL+RG EK+D ++G
Sbjct: 90 LKKKLKSGRRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRG 149
Query: 205 FRFSTYATWWIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAPTEAEIS 384
++FSTYA WWIRQ ITRAIA+ SR IRLP+H+ + L L+K + LS EL R PT E+S
Sbjct: 150 YKFSTYAYWWIRQGITRAIAEKSRSIRLPIHITEMLNKLKKGQRELSQELSRTPTLKELS 209
Query: 385 ARSNLPVAKMRFLADASQSTVSLDMPIG 468
LP ++ L + VSL+ IG
Sbjct: 210 EYVELPETDVKDLMSRAGQPVSLETKIG 237
[207][TOP]
>UniRef100_Q2INW6 RNA polymerase sigma factor n=1 Tax=Anaeromyxobacter dehalogenans
2CP-C RepID=Q2INW6_ANADE
Length = 805
Score = 162 bits (410), Expect = 1e-38
Identities = 83/155 (53%), Positives = 112/155 (72%)
Frame = +1
Query: 52 RAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEKYDASKGFRFSTYATW 231
RAK +V ANLRLVVSIAKKY NRGL DLIQEG+IGL++ +K++ +G++FSTYATW
Sbjct: 566 RAKTELVEANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYKRGYKFSTYATW 625
Query: 232 WIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAPTEAEISARSNLPVAK 411
WIRQAITRAIAD +R IR+PVH+ +T+ L +TS+ L ELGR PT EI+ + LP+ K
Sbjct: 626 WIRQAITRAIADQARTIRIPVHMIETINKLIRTSRYLVQELGREPTPEEIAEKMELPLDK 685
Query: 412 MRFLADASQSTVSLDMPIGKKSGGDPGCATLGSFI 516
+R + ++ +SL+ PIG++ + LG FI
Sbjct: 686 VRKVLKIAKEPISLETPIGEEED-----SHLGDFI 715
[208][TOP]
>UniRef100_B8JDL7 RNA polymerase sigma factor n=1 Tax=Anaeromyxobacter dehalogenans
2CP-1 RepID=B8JDL7_ANAD2
Length = 802
Score = 162 bits (410), Expect = 1e-38
Identities = 83/155 (53%), Positives = 112/155 (72%)
Frame = +1
Query: 52 RAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEKYDASKGFRFSTYATW 231
RAK +V ANLRLVVSIAKKY NRGL DLIQEG+IGL++ +K++ +G++FSTYATW
Sbjct: 563 RAKTELVEANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYKRGYKFSTYATW 622
Query: 232 WIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAPTEAEISARSNLPVAK 411
WIRQAITRAIAD +R IR+PVH+ +T+ L +TS+ L ELGR PT EI+ + LP+ K
Sbjct: 623 WIRQAITRAIADQARTIRIPVHMIETINKLIRTSRYLVQELGREPTPEEIAEKMELPLDK 682
Query: 412 MRFLADASQSTVSLDMPIGKKSGGDPGCATLGSFI 516
+R + ++ +SL+ PIG++ + LG FI
Sbjct: 683 VRKVLKIAKEPISLETPIGEEED-----SHLGDFI 712
[209][TOP]
>UniRef100_B4UDK5 RNA polymerase sigma factor n=1 Tax=Anaeromyxobacter sp. K
RepID=B4UDK5_ANASK
Length = 805
Score = 162 bits (410), Expect = 1e-38
Identities = 83/155 (53%), Positives = 112/155 (72%)
Frame = +1
Query: 52 RAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEKYDASKGFRFSTYATW 231
RAK +V ANLRLVVSIAKKY NRGL DLIQEG+IGL++ +K++ +G++FSTYATW
Sbjct: 566 RAKTELVEANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYKRGYKFSTYATW 625
Query: 232 WIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAPTEAEISARSNLPVAK 411
WIRQAITRAIAD +R IR+PVH+ +T+ L +TS+ L ELGR PT EI+ + LP+ K
Sbjct: 626 WIRQAITRAIADQARTIRIPVHMIETINKLIRTSRYLVQELGREPTPEEIAEKMELPLDK 685
Query: 412 MRFLADASQSTVSLDMPIGKKSGGDPGCATLGSFI 516
+R + ++ +SL+ PIG++ + LG FI
Sbjct: 686 VRKVLKIAKEPISLETPIGEEED-----SHLGDFI 715
[210][TOP]
>UniRef100_A8MG96 RNA polymerase sigma factor n=1 Tax=Alkaliphilus oremlandii OhILAs
RepID=A8MG96_ALKOO
Length = 372
Score = 162 bits (410), Expect = 1e-38
Identities = 85/154 (55%), Positives = 111/154 (72%)
Frame = +1
Query: 55 AKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEKYDASKGFRFSTYATWW 234
AK+R+V ANLRLVVSIAK+Y+ RG+L DLIQEG++GLI+ EK+D KGF+FSTYATWW
Sbjct: 135 AKKRLVEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDYKKGFKFSTYATWW 194
Query: 235 IRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAPTEAEISARSNLPVAKM 414
IRQAITRAIAD +R IR+PVH+ +T+ L + S+ L ELGR P EI+A +L K+
Sbjct: 195 IRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQELGRDPKPEEIAAEMDLSEEKV 254
Query: 415 RFLADASQSTVSLDMPIGKKSGGDPGCATLGSFI 516
R + +Q VSL+ PIG++ + LG FI
Sbjct: 255 REILKIAQEPVSLETPIGEEED-----SHLGDFI 283
[211][TOP]
>UniRef100_A7H8C8 RNA polymerase sigma factor n=1 Tax=Anaeromyxobacter sp. Fw109-5
RepID=A7H8C8_ANADF
Length = 819
Score = 162 bits (410), Expect = 1e-38
Identities = 83/155 (53%), Positives = 112/155 (72%)
Frame = +1
Query: 52 RAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEKYDASKGFRFSTYATW 231
RAK +V ANLRLVVSIAKKY NRGL DLIQEG+IGL++ +K++ +G++FSTYATW
Sbjct: 580 RAKTELVEANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYKRGYKFSTYATW 639
Query: 232 WIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAPTEAEISARSNLPVAK 411
WIRQAITRAIAD +R IR+PVH+ +T+ L +TS+ L ELGR PT EI+ + LP+ K
Sbjct: 640 WIRQAITRAIADQARTIRIPVHMIETINKLIRTSRYLVQELGREPTPEEIAEKMELPLDK 699
Query: 412 MRFLADASQSTVSLDMPIGKKSGGDPGCATLGSFI 516
+R + ++ +SL+ PIG++ + LG FI
Sbjct: 700 VRKVLKIAKEPISLETPIGEEED-----SHLGDFI 729
[212][TOP]
>UniRef100_A2C578 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
NATL1A RepID=A2C578_PROM1
Length = 335
Score = 162 bits (410), Expect = 1e-38
Identities = 82/148 (55%), Positives = 107/148 (72%)
Frame = +1
Query: 25 LRRQLRCGLRAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEKYDASKG 204
L+++L+ G RAKERMV+ANLRLVVS+AKKY R + L DLIQEG+IGL+RG EK+D ++G
Sbjct: 90 LKKKLKSGRRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRG 149
Query: 205 FRFSTYATWWIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAPTEAEIS 384
++FSTYA WWIRQ ITRAIA+ SR IRLP+H+ + L L+K + LS EL R PT E+S
Sbjct: 150 YKFSTYAYWWIRQGITRAIAEKSRSIRLPIHITEMLNKLKKGQRELSQELSRTPTLKELS 209
Query: 385 ARSNLPVAKMRFLADASQSTVSLDMPIG 468
LP ++ L + VSL+ IG
Sbjct: 210 EYVELPETDVKDLMSRAGQPVSLETKIG 237
[213][TOP]
>UniRef100_Q84J06 RNA polymerase sigma factor (Fragment) n=1 Tax=Microcystis
wesenbergii RepID=Q84J06_9CHRO
Length = 188
Score = 162 bits (410), Expect = 1e-38
Identities = 79/141 (56%), Positives = 106/141 (75%)
Frame = +1
Query: 115 LNRGLLLQDLIQEGSIGLIRGAEKYDASKGFRFSTYATWWIRQAITRAIADHSRPIRLPV 294
+NRGL QDLIQEGS+GLIR AEK+D KG++FSTYATWWIRQAITRAIAD SR IRLPV
Sbjct: 1 MNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPV 60
Query: 295 HVNDTLAALRKTSKLLSVELGRAPTEAEISARSNLPVAKMRFLADASQSTVSLDMPIGKK 474
H+ +T++ ++KT+K+LS E+ R PTE EI+ + + + K+RF+A ++Q +SL+ PIGK+
Sbjct: 61 HLYETISRIKKTTKILSQEMRRKPTEEEIATKMEMTIEKLRFIAKSAQLPISLETPIGKE 120
Query: 475 SGGDPGCATLGSFIVWSGDDP 537
+ LG FI G+ P
Sbjct: 121 ED-----SRLGDFIEADGETP 136
[214][TOP]
>UniRef100_C7RD98 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1
Tax=Anaerococcus prevotii DSM 20548 RepID=C7RD98_ANAPD
Length = 602
Score = 162 bits (410), Expect = 1e-38
Identities = 84/172 (48%), Positives = 119/172 (69%)
Frame = +1
Query: 1 VTDMDVAALRRQLRCGLRAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGA 180
++D D+ LRR + RAK+++ NLRLVVSIAKKY+ RG+ DLIQEG++GL++
Sbjct: 348 LSDEDILDLRRAVLNSKRAKKKLAETNLRLVVSIAKKYVGRGMSFLDLIQEGNMGLMKAV 407
Query: 181 EKYDASKGFRFSTYATWWIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGR 360
+KYD ++GF+FSTYATWWIRQAITRAIAD +R IR+PVH+ +T+ L + + L +LGR
Sbjct: 408 DKYDYNRGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVRIQRQLVQDLGR 467
Query: 361 APTEAEISARSNLPVAKMRFLADASQSTVSLDMPIGKKSGGDPGCATLGSFI 516
P+ EI+ + L V K++ + SQ VSL+ PIG++ + LG FI
Sbjct: 468 DPSNEEIAEQMGLEVEKVQEIRKISQEPVSLETPIGEEDD-----SHLGDFI 514
[215][TOP]
>UniRef100_C1IAB3 RNA polymerase sigma factor n=1 Tax=Clostridium sp. 7_2_43FAA
RepID=C1IAB3_9CLOT
Length = 370
Score = 162 bits (410), Expect = 1e-38
Identities = 85/155 (54%), Positives = 111/155 (71%)
Frame = +1
Query: 52 RAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEKYDASKGFRFSTYATW 231
RAK+++ ANLRLVVSIAK+Y+ RG+L DLIQEG++GLI+ EK+D KGF+FSTYATW
Sbjct: 132 RAKKKLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDYRKGFKFSTYATW 191
Query: 232 WIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAPTEAEISARSNLPVAK 411
WIRQAITRAIAD +R IR+PVH+ +T+ L + + L ELGR P EIS +LPV K
Sbjct: 192 WIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQELGRDPFPEEISKVMDLPVDK 251
Query: 412 MRFLADASQSTVSLDMPIGKKSGGDPGCATLGSFI 516
+R + +Q VSL+ PIG++ + LG FI
Sbjct: 252 VREIQKIAQEPVSLETPIGEEED-----SHLGDFI 281
[216][TOP]
>UniRef100_B0P3M7 RNA polymerase sigma factor n=1 Tax=Clostridium sp. SS2/1
RepID=B0P3M7_9CLOT
Length = 363
Score = 162 bits (410), Expect = 1e-38
Identities = 84/170 (49%), Positives = 117/170 (68%)
Frame = +1
Query: 7 DMDVAALRRQLRCGLRAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEK 186
D ++ +R AK+++ ANLRLVVSIAK+Y+ RG+L DLIQEG++GLI+ EK
Sbjct: 110 DEEIKLAQRMEEGDEAAKKKLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEK 169
Query: 187 YDASKGFRFSTYATWWIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAP 366
+D KG++FSTYATWWIRQAITRAIAD +R IR+PVH+ +T+ L + S+ L ELGR P
Sbjct: 170 FDYRKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQELGREP 229
Query: 367 TEAEISARSNLPVAKMRFLADASQSTVSLDMPIGKKSGGDPGCATLGSFI 516
+ EI+ ++PV ++R + SQ VSL+ PIG++ + LG FI
Sbjct: 230 SPEEIAEEMDIPVERVREILKISQEPVSLETPIGEEED-----SHLGDFI 274
[217][TOP]
>UniRef100_A9RXT3 Plastid sigma facor SIG2 n=2 Tax=Physcomitrella patens
RepID=A9RXT3_PHYPA
Length = 579
Score = 162 bits (410), Expect = 1e-38
Identities = 82/169 (48%), Positives = 117/169 (69%)
Frame = +1
Query: 10 MDVAALRRQLRCGLRAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEKY 189
M+ A +L+ G AK++MV++NLRLVVSIAK Y RG+ LQDLIQEGS+GL+RGAEK+
Sbjct: 321 MEQNAFEARLKKGRFAKDKMVNSNLRLVVSIAKNYQGRGMTLQDLIQEGSMGLVRGAEKF 380
Query: 190 DASKGFRFSTYATWWIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAPT 369
D +KGF+FSTYA WWIRQA+TR+IAD SR IRLP+H+ + ++ + K ++L E GR
Sbjct: 381 DPTKGFKFSTYAHWWIRQAVTRSIADQSRTIRLPIHLYEVISRINKAKRMLVQEHGREAR 440
Query: 370 EAEISARSNLPVAKMRFLADASQSTVSLDMPIGKKSGGDPGCATLGSFI 516
E++ L V K++ + ++++ S++ PIGK G TLG +
Sbjct: 441 NEEVAELVGLTVEKLKSVVKSAKAPGSMERPIGK-----DGDTTLGELV 484
[218][TOP]
>UniRef100_Q7U5S5 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. WH 8102
RepID=Q7U5S5_SYNPX
Length = 313
Score = 162 bits (409), Expect = 2e-38
Identities = 88/171 (51%), Positives = 118/171 (69%), Gaps = 1/171 (0%)
Frame = +1
Query: 28 RRQLRCGLRAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEKYDASKGF 207
RR LR G RAKERM+ ANLRLVVS+AKKY +GL L DLIQEGS+GL R EK+D ++G+
Sbjct: 69 RRMLRIGRRAKERMMKANLRLVVSVAKKYQGKGLELLDLIQEGSLGLERAVEKFDPTRGY 128
Query: 208 RFSTYATWWIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAPTEAEISA 387
+FSTYA WWIRQ++TRAIA SR IRLPVH+++ L +RK S L+ +LG P+ EI+
Sbjct: 129 KFSTYAFWWIRQSMTRAIACQSRTIRLPVHLSERLTTIRKVSLDLAHKLGAMPSRVEIAE 188
Query: 388 RSNLPVAKMRFLADASQSTVSLDMPIGKKSGGDPGCATLGSFIVWSG-DDP 537
++P+ ++ L + +T SLD P+ G+ G + LG I S D+P
Sbjct: 189 AMDIPLDELDSLLRQALTTSSLDAPV----NGEEGRSFLGDLIADSSLDEP 235
[219][TOP]
>UniRef100_Q3AL85 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. CC9605
RepID=Q3AL85_SYNSC
Length = 312
Score = 162 bits (409), Expect = 2e-38
Identities = 89/173 (51%), Positives = 119/173 (68%), Gaps = 1/173 (0%)
Frame = +1
Query: 22 ALRRQLRCGLRAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEKYDASK 201
A RR LR G RAKERM+ ANLRLVVS+AKKY +GL L DLIQEGS+GL R EK+D ++
Sbjct: 66 AQRRLLRIGRRAKERMMKANLRLVVSVAKKYQGKGLELLDLIQEGSLGLERAVEKFDPTR 125
Query: 202 GFRFSTYATWWIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAPTEAEI 381
G++FSTYA WWIRQ++TRAIA SR IRLPVH+++ L +RK S L+ +LG P+ EI
Sbjct: 126 GYKFSTYAFWWIRQSMTRAIACQSRTIRLPVHLSERLTTIRKVSLDLAHKLGAMPSRVEI 185
Query: 382 SARSNLPVAKMRFLADASQSTVSLDMPIGKKSGGDPGCATLGSFIVWSG-DDP 537
+ ++P+ ++ L + +T SLD P+ G+ G + LG I S D+P
Sbjct: 186 AEAMDIPLDELDSLLRQALTTSSLDAPV----NGEEGRSFLGDLIADSSLDEP 234
[220][TOP]
>UniRef100_Q318B2 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
MIT 9312 RepID=Q318B2_PROM9
Length = 344
Score = 162 bits (409), Expect = 2e-38
Identities = 79/154 (51%), Positives = 111/154 (72%)
Frame = +1
Query: 7 DMDVAALRRQLRCGLRAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEK 186
++ + ++++LR G RAKERMV+ANLRLVVS+AKKY R + L DLIQEG+IGL+RG EK
Sbjct: 93 NLSIPIIKKRLRAGQRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEK 152
Query: 187 YDASKGFRFSTYATWWIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAP 366
+D ++G++FSTYA WWIRQ ITRAIA+ SR IRLP+H+ + L L+K + LS E+ R P
Sbjct: 153 FDPARGYKFSTYAYWWIRQGITRAIAEKSRAIRLPIHITEMLNKLKKGQRELSQEMSRTP 212
Query: 367 TEAEISARSNLPVAKMRFLADASQSTVSLDMPIG 468
T +E++ LP ++ L + VSL+ +G
Sbjct: 213 TVSELAKYVELPEEDVKDLMCKAGQPVSLETKVG 246
[221][TOP]
>UniRef100_B9KZ85 RNA polymerase sigma factor n=1 Tax=Thermomicrobium roseum DSM 5159
RepID=B9KZ85_THERP
Length = 369
Score = 162 bits (409), Expect = 2e-38
Identities = 83/157 (52%), Positives = 112/157 (71%)
Frame = +1
Query: 46 GLRAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEKYDASKGFRFSTYA 225
G RA+ ++ ANLRLVVS+AKKY+ RGL DLIQEG+IGL++ EK+D +G++FSTYA
Sbjct: 129 GERARAHLIQANLRLVVSVAKKYVGRGLSFLDLIQEGNIGLMKATEKFDYKRGYKFSTYA 188
Query: 226 TWWIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAPTEAEISARSNLPV 405
TWWIRQAITRAI+D SR IRLPVHV +T+ ++K S L L R PT+ E++ ++P
Sbjct: 189 TWWIRQAITRAISDQSRTIRLPVHVGETINRIKKISHRLQQILEREPTQLEVARALDMPE 248
Query: 406 AKMRFLADASQSTVSLDMPIGKKSGGDPGCATLGSFI 516
K+R + +A++ VSL+ PIG+ G A LG FI
Sbjct: 249 EKIRQILEAARLPVSLEAPIGQ-----DGDAFLGDFI 280
[222][TOP]
>UniRef100_D0CHN6 RNA polymerase sigma factor RpoD n=1 Tax=Synechococcus sp. WH 8109
RepID=D0CHN6_9SYNE
Length = 312
Score = 162 bits (409), Expect = 2e-38
Identities = 89/173 (51%), Positives = 119/173 (68%), Gaps = 1/173 (0%)
Frame = +1
Query: 22 ALRRQLRCGLRAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEKYDASK 201
A RR LR G RAKERM+ ANLRLVVS+AKKY +GL L DLIQEGS+GL R EK+D ++
Sbjct: 66 AQRRLLRIGRRAKERMMKANLRLVVSVAKKYQGKGLELLDLIQEGSLGLERAVEKFDPTR 125
Query: 202 GFRFSTYATWWIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAPTEAEI 381
G++FSTYA WWIRQ++TRAIA SR IRLPVH+++ L +RK S L+ +LG P+ EI
Sbjct: 126 GYKFSTYAFWWIRQSMTRAIACQSRTIRLPVHLSERLTTIRKVSLDLAHKLGAMPSRVEI 185
Query: 382 SARSNLPVAKMRFLADASQSTVSLDMPIGKKSGGDPGCATLGSFIVWSG-DDP 537
+ ++P+ ++ L + +T SLD P+ G+ G + LG I S D+P
Sbjct: 186 AEAMDIPLDELDSLLRQALTTSSLDAPV----NGEEGRSFLGDLIADSSLDEP 234
[223][TOP]
>UniRef100_C2C209 RNA polymerase sigma factor n=1 Tax=Listeria grayi DSM 20601
RepID=C2C209_LISGR
Length = 389
Score = 162 bits (409), Expect = 2e-38
Identities = 85/170 (50%), Positives = 116/170 (68%)
Frame = +1
Query: 7 DMDVAALRRQLRCGLRAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEK 186
D +VA +R + AK R+ ANLRLVVSIAK+Y+ RG+L DLIQEG++GL++ EK
Sbjct: 136 DEEVALAKRIETGDIEAKGRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLMKAVEK 195
Query: 187 YDASKGFRFSTYATWWIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAP 366
+D +KGF+FSTYATWWIRQAITRAIAD +R IR+PVH+ +T+ L + + L +LGR P
Sbjct: 196 FDFNKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRSLLQDLGRDP 255
Query: 367 TEAEISARSNLPVAKMRFLADASQSTVSLDMPIGKKSGGDPGCATLGSFI 516
+ EI +LP K+R + +Q VSL+ PIG++ + LG FI
Sbjct: 256 SPEEIGEEMDLPTEKVREILKIAQEPVSLETPIGEEDD-----SHLGDFI 300
[224][TOP]
>UniRef100_C1SK63 RNA polymerase sigma factor n=1 Tax=Denitrovibrio acetiphilus DSM
12809 RepID=C1SK63_9BACT
Length = 626
Score = 162 bits (409), Expect = 2e-38
Identities = 79/155 (50%), Positives = 114/155 (73%)
Frame = +1
Query: 52 RAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEKYDASKGFRFSTYATW 231
+AK +++ ANLRLVVSIAKKY NRGL DLIQEG+IGL++ EK++ +G++FSTYATW
Sbjct: 388 KAKSKLIEANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVEKFEYKRGYKFSTYATW 447
Query: 232 WIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAPTEAEISARSNLPVAK 411
WIRQAITRAIAD +R IR+PVH+ +T+ + K ++ L ++GR PT EIS++ ++PV K
Sbjct: 448 WIRQAITRAIADQARTIRIPVHMIETINKMMKITRQLQQDMGREPTPEEISSKMDIPVEK 507
Query: 412 MRFLADASQSTVSLDMPIGKKSGGDPGCATLGSFI 516
++ + ++ VSL+ PIG+ ++LG FI
Sbjct: 508 IKKVMKIAKEPVSLETPIGEDED-----SSLGDFI 537
[225][TOP]
>UniRef100_C0GN03 RNA polymerase sigma factor n=1 Tax=Desulfonatronospira
thiodismutans ASO3-1 RepID=C0GN03_9DELT
Length = 588
Score = 162 bits (409), Expect = 2e-38
Identities = 82/156 (52%), Positives = 114/156 (73%)
Frame = +1
Query: 49 LRAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEKYDASKGFRFSTYAT 228
LRAK+ ++ ANLRLVVSIAKKY NRGL DLIQEG+IGL++ +K++ +G++FSTYAT
Sbjct: 348 LRAKQELIRANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYQRGYKFSTYAT 407
Query: 229 WWIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAPTEAEISARSNLPVA 408
WWIRQAITRAIAD +R IR+PVH+ +T+ L +TS+ L ELGR P+ EI+ R + P+
Sbjct: 408 WWIRQAITRAIADQARTIRIPVHMIETINKLVRTSRYLVQELGRDPSPEEIAERMDYPLE 467
Query: 409 KMRFLADASQSTVSLDMPIGKKSGGDPGCATLGSFI 516
K++ + ++ +SL+ PI GD ++LG FI
Sbjct: 468 KVKKVLKIAKEPISLETPI-----GDEEDSSLGDFI 498
[226][TOP]
>UniRef100_A6GG53 RNA polymerase sigma factor n=1 Tax=Plesiocystis pacifica SIR-1
RepID=A6GG53_9DELT
Length = 589
Score = 162 bits (409), Expect = 2e-38
Identities = 83/155 (53%), Positives = 112/155 (72%)
Frame = +1
Query: 52 RAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEKYDASKGFRFSTYATW 231
RAK +V ANLRLVVSIAKKY NRGL DLIQEG+IGL++ +K++ +G++FSTYATW
Sbjct: 349 RAKAELVEANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYKRGYKFSTYATW 408
Query: 232 WIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAPTEAEISARSNLPVAK 411
WIRQAITRAIAD +R IR+PVH+ +T+ L +TS+ L ELGR PT EI+ + LP+ K
Sbjct: 409 WIRQAITRAIADQARTIRIPVHMIETINKLIRTSRSLVQELGREPTPEEIAEKMELPLDK 468
Query: 412 MRFLADASQSTVSLDMPIGKKSGGDPGCATLGSFI 516
+R + ++ +SL+ PIG++ + LG FI
Sbjct: 469 VRKVLKIAKEPISLETPIGEEED-----SHLGDFI 498
[227][TOP]
>UniRef100_B8C130 RNA polymerase (Fragment) n=1 Tax=Thalassiosira pseudonana CCMP1335
RepID=B8C130_THAPS
Length = 318
Score = 162 bits (409), Expect = 2e-38
Identities = 78/153 (50%), Positives = 109/153 (71%)
Frame = +1
Query: 10 MDVAALRRQLRCGLRAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEKY 189
M V +++Q+R LRAK + +NLRLV+SIAK+Y RGL +QDL QEG++GL R EK+
Sbjct: 62 MTVTQIKKQIRRSLRAKAALTESNLRLVISIAKRYQGRGLNMQDLCQEGTLGLTRACEKF 121
Query: 190 DASKGFRFSTYATWWIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAPT 369
D +GFRFSTYATWWI+Q I RAIAD +R IRLPVH++D L+ +RK + L ELGR T
Sbjct: 122 DPERGFRFSTYATWWIKQGIMRAIADQARTIRLPVHIHDQLSIVRKAERDLQNELGRDAT 181
Query: 370 EAEISARSNLPVAKMRFLADASQSTVSLDMPIG 468
+ E++A+ + K+ FL AS ++S++ +G
Sbjct: 182 KEEVAAKVGMKPDKIEFLKRASVGSISMEQELG 214
[228][TOP]
>UniRef100_B7GEJ9 Predicted protein (Fragment) n=1 Tax=Phaeodactylum tricornutum CCAP
1055/1 RepID=B7GEJ9_PHATR
Length = 329
Score = 162 bits (409), Expect = 2e-38
Identities = 87/175 (49%), Positives = 111/175 (63%), Gaps = 8/175 (4%)
Frame = +1
Query: 7 DMDVAALRRQLRCGLRAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEK 186
DM V L++Q+R LRAK + +N+RLVVSIAK+Y +RGL QDL QEG +GL R EK
Sbjct: 61 DMMVPDLKKQIRRSLRAKAALTESNIRLVVSIAKRYQHRGLSFQDLAQEGILGLTRACEK 120
Query: 187 YDASKGFRFSTYATWWIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAP 366
+D +GFRFSTYA+WWI+Q+I RAIAD R IRLPVH++D + ALRK + L ELGR
Sbjct: 121 FDPERGFRFSTYASWWIKQSIMRAIADQGRTIRLPVHIHDQINALRKVERELKAELGRDA 180
Query: 367 TEAEISARSNLPVAKMRFLADASQSTVSLDMPIGKKS--------GGDPGCATLG 507
EI+ +S L K+ FL SQ VS++ + GG G TLG
Sbjct: 181 RLEEITEKSTLTAEKIEFLNRVSQQDVSMEQELRTSKSKGSSAGLGGPDGGLTLG 235
[229][TOP]
>UniRef100_UPI0000F53BBC RNA polymerase sigma factor RpoD n=1 Tax=Listeria monocytogenes FSL
J2-071 RepID=UPI0000F53BBC
Length = 374
Score = 161 bits (408), Expect = 2e-38
Identities = 84/170 (49%), Positives = 116/170 (68%)
Frame = +1
Query: 7 DMDVAALRRQLRCGLRAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEK 186
D ++A +R + AK R+ ANLRLVVSIAK+Y+ RG+L DLIQEG++GL++ EK
Sbjct: 121 DEEIALAKRIEAGDIEAKGRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLMKAVEK 180
Query: 187 YDASKGFRFSTYATWWIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAP 366
+D +KGF+FSTYATWWIRQAITRAIAD +R IR+PVH+ +T+ L + + L +LGR P
Sbjct: 181 FDFNKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRSLLQDLGRDP 240
Query: 367 TEAEISARSNLPVAKMRFLADASQSTVSLDMPIGKKSGGDPGCATLGSFI 516
+ EI +LP K+R + +Q VSL+ PIG++ + LG FI
Sbjct: 241 SPEEIGEEMDLPTEKVREILKIAQEPVSLETPIGEEDD-----SHLGDFI 285
[230][TOP]
>UniRef100_Q748B8 RNA polymerase sigma factor n=1 Tax=Geobacter sulfurreducens
RepID=Q748B8_GEOSL
Length = 577
Score = 161 bits (408), Expect = 2e-38
Identities = 82/154 (53%), Positives = 112/154 (72%)
Frame = +1
Query: 55 AKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEKYDASKGFRFSTYATWW 234
AK +V ANLRLVVSIAKKY NRGL DLIQEG+IGL++ +K++ +G++FSTYATWW
Sbjct: 340 AKSELVEANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYQRGYKFSTYATWW 399
Query: 235 IRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAPTEAEISARSNLPVAKM 414
IRQAITRAIAD +R IR+PVH+ +T+ L +TS+ L E+GR P+ EI+ R NLP+ K+
Sbjct: 400 IRQAITRAIADQARTIRIPVHMIETINKLIRTSRQLVQEIGREPSPEEIAERMNLPLDKV 459
Query: 415 RFLADASQSTVSLDMPIGKKSGGDPGCATLGSFI 516
R + ++ +SL+ PIG++ + LG FI
Sbjct: 460 RKVLKIAKEPISLETPIGEEED-----SHLGDFI 488
[231][TOP]
>UniRef100_Q5FHI1 RNA polymerase sigma factor n=2 Tax=Ehrlichia ruminantium
RepID=Q5FHI1_EHRRG
Length = 622
Score = 161 bits (408), Expect = 2e-38
Identities = 82/167 (49%), Positives = 115/167 (68%)
Frame = +1
Query: 16 VAALRRQLRCGLRAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEKYDA 195
V +++ R +AK+ M+ ANLRLVVSIAKKY NRGL DL+QEG+IGL++ +K+D
Sbjct: 372 VTKIQKHERAATQAKQEMIKANLRLVVSIAKKYSNRGLQFLDLVQEGNIGLMKAVDKFDY 431
Query: 196 SKGFRFSTYATWWIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAPTEA 375
+G++FSTYATWW+RQAITRAIAD +R IR+PVH+ +T+ + +T + + E+GR PT
Sbjct: 432 KRGYKFSTYATWWVRQAITRAIADQARTIRIPVHMIETVNKINRTLRQMLHEIGREPTLE 491
Query: 376 EISARSNLPVAKMRFLADASQSTVSLDMPIGKKSGGDPGCATLGSFI 516
E+SAR N+ V K+R + + VSL+ PI GD +T G I
Sbjct: 492 ELSARLNINVDKIRKVMKIVKDPVSLESPI-----GDDDSSTFGDCI 533
[232][TOP]
>UniRef100_Q39YN6 RNA polymerase sigma factor n=1 Tax=Geobacter metallireducens GS-15
RepID=Q39YN6_GEOMG
Length = 579
Score = 161 bits (408), Expect = 2e-38
Identities = 82/154 (53%), Positives = 112/154 (72%)
Frame = +1
Query: 55 AKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEKYDASKGFRFSTYATWW 234
AK +V ANLRLVVSIAKKY NRGL DLIQEG+IGL++ +K++ +G++FSTYATWW
Sbjct: 342 AKSELVEANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYQRGYKFSTYATWW 401
Query: 235 IRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAPTEAEISARSNLPVAKM 414
IRQAITRAIAD +R IR+PVH+ +T+ L +TS+ L E+GR P+ EI+ R NLP+ K+
Sbjct: 402 IRQAITRAIADQARTIRIPVHMIETINKLIRTSRQLVQEIGREPSPEEIAERMNLPLDKV 461
Query: 415 RFLADASQSTVSLDMPIGKKSGGDPGCATLGSFI 516
R + ++ +SL+ PIG++ + LG FI
Sbjct: 462 RKVLKIAKEPISLETPIGEEED-----SHLGDFI 490
[233][TOP]
>UniRef100_Q24T06 RNA polymerase sigma factor n=1 Tax=Desulfitobacterium hafniense
Y51 RepID=Q24T06_DESHY
Length = 367
Score = 161 bits (408), Expect = 2e-38
Identities = 83/154 (53%), Positives = 111/154 (72%)
Frame = +1
Query: 55 AKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEKYDASKGFRFSTYATWW 234
AK R+ ANLRLVVSIAK+Y+ RG+L DLIQEG++GLI+ EK+D KGF+FSTYATWW
Sbjct: 130 AKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDYVKGFKFSTYATWW 189
Query: 235 IRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAPTEAEISARSNLPVAKM 414
IRQAITRAIAD +R IR+PVH+ +T+ L + S+ L ELGR PT EI+ + ++ V ++
Sbjct: 190 IRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQELGREPTPEEIAVQMDISVERV 249
Query: 415 RFLADASQSTVSLDMPIGKKSGGDPGCATLGSFI 516
R + +Q VSL+ PIG++ + LG FI
Sbjct: 250 REIMKIAQEPVSLETPIGEEED-----SHLGDFI 278
[234][TOP]
>UniRef100_Q02AB6 RNA polymerase sigma factor n=1 Tax=Candidatus Solibacter usitatus
Ellin6076 RepID=Q02AB6_SOLUE
Length = 563
Score = 161 bits (408), Expect = 2e-38
Identities = 80/155 (51%), Positives = 114/155 (73%)
Frame = +1
Query: 55 AKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEKYDASKGFRFSTYATWW 234
AK+ ++ ANLRLVVSIAK+Y NRGL DLIQEG+IGL++ +K++ +G++FSTYATWW
Sbjct: 320 AKKELIEANLRLVVSIAKRYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWW 379
Query: 235 IRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAPTEAEISARSNLPVAKM 414
+RQAITRAIAD +R IR+PVH+ +T+ L +TS+ + ELGR P+ E++ R LPV+K+
Sbjct: 380 VRQAITRAIADQARTIRIPVHMIETINKLIRTSRQMVQELGREPSNEELAKRLQLPVSKV 439
Query: 415 RFLADASQSTVSLDMPIGKKSGGDPGCATLGSFIV 519
R + +Q +SL+ PIG++ + LG FIV
Sbjct: 440 RKVLRVAQEPISLETPIGEEEE-----SHLGDFIV 469
[235][TOP]
>UniRef100_C4K2W3 RNA polymerase sigma factor n=1 Tax=Rickettsia peacockii str.
Rustic RepID=C4K2W3_RICPU
Length = 634
Score = 161 bits (408), Expect = 2e-38
Identities = 82/167 (49%), Positives = 118/167 (70%)
Frame = +1
Query: 16 VAALRRQLRCGLRAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEKYDA 195
V +++ R L+AK+ M+ ANLRLV+SIAKKY NRGL DLIQEG+IGL++ +K++
Sbjct: 368 VNTIQKSERQTLQAKKDMIEANLRLVISIAKKYANRGLQFLDLIQEGNIGLMKAVDKFEY 427
Query: 196 SKGFRFSTYATWWIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAPTEA 375
+G++FSTYATWWIRQAITRAIAD +R IR+PVH+ +T+ + +TS+ + ELG PT
Sbjct: 428 RRGYKFSTYATWWIRQAITRAIADQARTIRIPVHMIETINKILRTSRQMLNELGYEPTAT 487
Query: 376 EISARSNLPVAKMRFLADASQSTVSLDMPIGKKSGGDPGCATLGSFI 516
EI+ R ++P+ K+R + ++ +SL+ P+G S G LG FI
Sbjct: 488 EIANRLSMPLDKVRKVMKIAKEPISLENPVGDDSDG----GQLGDFI 530
[236][TOP]
>UniRef100_B8ZQV3 RNA polymerase sigma factor n=2 Tax=Mycobacterium leprae
RepID=B8ZQV3_MYCLB
Length = 319
Score = 161 bits (408), Expect = 2e-38
Identities = 84/165 (50%), Positives = 112/165 (67%)
Frame = +1
Query: 22 ALRRQLRCGLRAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEKYDASK 201
AL R G A+ ++ ANLRLVVS+AK+Y RG+ L DLIQEG++GLIR EK+D +K
Sbjct: 71 ALAAVARDGAAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYTK 130
Query: 202 GFRFSTYATWWIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAPTEAEI 381
GF+FSTYATWWIRQAITR +AD SR IRLPVH+ + + L + + + LGR T+ E+
Sbjct: 131 GFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQNLGREATDEEL 190
Query: 382 SARSNLPVAKMRFLADASQSTVSLDMPIGKKSGGDPGCATLGSFI 516
+A S +P+ K+ L + S+ VSLDMP+G + A LG FI
Sbjct: 191 AAESGIPIEKINDLLEHSRDPVSLDMPVGSEEE-----APLGDFI 230
[237][TOP]
>UniRef100_B8FTY1 RNA polymerase sigma factor n=1 Tax=Desulfitobacterium hafniense
DCB-2 RepID=B8FTY1_DESHD
Length = 372
Score = 161 bits (408), Expect = 2e-38
Identities = 83/154 (53%), Positives = 111/154 (72%)
Frame = +1
Query: 55 AKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEKYDASKGFRFSTYATWW 234
AK R+ ANLRLVVSIAK+Y+ RG+L DLIQEG++GLI+ EK+D KGF+FSTYATWW
Sbjct: 135 AKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDYVKGFKFSTYATWW 194
Query: 235 IRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAPTEAEISARSNLPVAKM 414
IRQAITRAIAD +R IR+PVH+ +T+ L + S+ L ELGR PT EI+ + ++ V ++
Sbjct: 195 IRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQELGREPTPEEIAVQMDISVERV 254
Query: 415 RFLADASQSTVSLDMPIGKKSGGDPGCATLGSFI 516
R + +Q VSL+ PIG++ + LG FI
Sbjct: 255 REIMKIAQEPVSLETPIGEEED-----SHLGDFI 283
[238][TOP]
>UniRef100_B2HLY9 RNA polymerase sigma factor n=1 Tax=Mycobacterium marinum M
RepID=B2HLY9_MYCMM
Length = 333
Score = 161 bits (408), Expect = 2e-38
Identities = 83/160 (51%), Positives = 111/160 (69%)
Frame = +1
Query: 37 LRCGLRAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEKYDASKGFRFS 216
+R G A+ ++ ANLRLVVS+AK+Y RG+ L DLIQEG++GLIR EK+D +KGF+FS
Sbjct: 90 VRDGAEARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYTKGFKFS 149
Query: 217 TYATWWIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAPTEAEISARSN 396
TYATWWIRQAITR +AD SR IRLPVH+ + + L + + + LGR T+ E++A S
Sbjct: 150 TYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQNLGREATDEELAAESG 209
Query: 397 LPVAKMRFLADASQSTVSLDMPIGKKSGGDPGCATLGSFI 516
+PV K+ L + S+ VSLDMP+G + A LG FI
Sbjct: 210 IPVEKINDLLEHSRDPVSLDMPVGSEEE-----APLGDFI 244
[239][TOP]
>UniRef100_A9KI23 RNA polymerase sigma factor n=1 Tax=Clostridium phytofermentans
ISDg RepID=A9KI23_CLOPH
Length = 372
Score = 161 bits (408), Expect = 2e-38
Identities = 83/170 (48%), Positives = 115/170 (67%)
Frame = +1
Query: 7 DMDVAALRRQLRCGLRAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEK 186
D ++ +R + AK+R+ ANLRLVVSIAK+Y+ RG+ DLIQEG++GLI+ EK
Sbjct: 119 DEEIVLAQRMEQGDKNAKKRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNLGLIKAVEK 178
Query: 187 YDASKGFRFSTYATWWIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAP 366
+D KG++FSTYATWWIRQAITRAIAD +R IR+PVH+ +T+ L + + L ELGR P
Sbjct: 179 FDYRKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQELGREP 238
Query: 367 TEAEISARSNLPVAKMRFLADASQSTVSLDMPIGKKSGGDPGCATLGSFI 516
E++ N+PV ++R + SQ VSL+ PIG++ + LG FI
Sbjct: 239 FPEEVAKEMNIPVERVREIQKISQEPVSLETPIGEEED-----SHLGDFI 283
[240][TOP]
>UniRef100_A8GU18 RNA polymerase sigma factor n=2 Tax=Rickettsia rickettsii
RepID=A8GU18_RICRS
Length = 634
Score = 161 bits (408), Expect = 2e-38
Identities = 82/167 (49%), Positives = 118/167 (70%)
Frame = +1
Query: 16 VAALRRQLRCGLRAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEKYDA 195
V +++ R L+AK+ M+ ANLRLV+SIAKKY NRGL DLIQEG+IGL++ +K++
Sbjct: 368 VNTIQKSERQTLQAKKDMIEANLRLVISIAKKYANRGLQFLDLIQEGNIGLMKAVDKFEY 427
Query: 196 SKGFRFSTYATWWIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAPTEA 375
+G++FSTYATWWIRQAITRAIAD +R IR+PVH+ +T+ + +TS+ + ELG PT
Sbjct: 428 RRGYKFSTYATWWIRQAITRAIADQARTIRIPVHMIETINKILRTSRQMLNELGYEPTAT 487
Query: 376 EISARSNLPVAKMRFLADASQSTVSLDMPIGKKSGGDPGCATLGSFI 516
EI+ R ++P+ K+R + ++ +SL+ P+G S G LG FI
Sbjct: 488 EIANRLSMPLDKVRKVMKIAKEPISLENPVGDDSDG----GQLGDFI 530
[241][TOP]
>UniRef100_A8GQ81 RNA polymerase sigma factor n=1 Tax=Rickettsia akari str. Hartford
RepID=A8GQ81_RICAH
Length = 635
Score = 161 bits (408), Expect = 2e-38
Identities = 82/167 (49%), Positives = 118/167 (70%)
Frame = +1
Query: 16 VAALRRQLRCGLRAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEKYDA 195
V +++ R L+AK+ M+ ANLRLV+SIAKKY NRGL DLIQEG+IGL++ +K++
Sbjct: 369 VNTIQKSERQTLQAKKDMIEANLRLVISIAKKYANRGLQFLDLIQEGNIGLMKAVDKFEY 428
Query: 196 SKGFRFSTYATWWIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAPTEA 375
+G++FSTYATWWIRQAITRAIAD +R IR+PVH+ +T+ + +TS+ + ELG PT
Sbjct: 429 RRGYKFSTYATWWIRQAITRAIADQARTIRIPVHMIETINKILRTSRQMLNELGYEPTAT 488
Query: 376 EISARSNLPVAKMRFLADASQSTVSLDMPIGKKSGGDPGCATLGSFI 516
EI+ R ++P+ K+R + ++ +SL+ P+G S G LG FI
Sbjct: 489 EIANRLSMPLDKVRKVMKIAKEPISLENPVGDDSDG----GQLGDFI 531
[242][TOP]
>UniRef100_A8F321 RNA polymerase sigma factor n=1 Tax=Rickettsia massiliae MTU5
RepID=A8F321_RICM5
Length = 633
Score = 161 bits (408), Expect = 2e-38
Identities = 82/167 (49%), Positives = 118/167 (70%)
Frame = +1
Query: 16 VAALRRQLRCGLRAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEKYDA 195
V +++ R L+AK+ M+ ANLRLV+SIAKKY NRGL DLIQEG+IGL++ +K++
Sbjct: 367 VNTIQKSERQTLQAKKDMIEANLRLVISIAKKYANRGLQFLDLIQEGNIGLMKAVDKFEY 426
Query: 196 SKGFRFSTYATWWIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAPTEA 375
+G++FSTYATWWIRQAITRAIAD +R IR+PVH+ +T+ + +TS+ + ELG PT
Sbjct: 427 RRGYKFSTYATWWIRQAITRAIADQARTIRIPVHMIETINKILRTSRQMLNELGYEPTAT 486
Query: 376 EISARSNLPVAKMRFLADASQSTVSLDMPIGKKSGGDPGCATLGSFI 516
EI+ R ++P+ K+R + ++ +SL+ P+G S G LG FI
Sbjct: 487 EIANRLSMPLDKVRKVMKIAKEPISLENPVGDDSDG----GQLGDFI 529
[243][TOP]
>UniRef100_A8F080 RNA polymerase sigma factor n=1 Tax=Rickettsia canadensis str.
McKiel RepID=A8F080_RICCK
Length = 635
Score = 161 bits (408), Expect = 2e-38
Identities = 82/167 (49%), Positives = 118/167 (70%)
Frame = +1
Query: 16 VAALRRQLRCGLRAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEKYDA 195
V +++ R L+AK+ M+ ANLRLV+SIAKKY NRGL DLIQEG+IGL++ +K++
Sbjct: 369 VNTIQKSERQTLQAKKDMIEANLRLVISIAKKYANRGLQFLDLIQEGNIGLMKAVDKFEY 428
Query: 196 SKGFRFSTYATWWIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAPTEA 375
+G++FSTYATWWIRQAITRAIAD +R IR+PVH+ +T+ + +TS+ + ELG PT
Sbjct: 429 RRGYKFSTYATWWIRQAITRAIADQARTIRIPVHMIETINKILRTSRQMLNELGYEPTAT 488
Query: 376 EISARSNLPVAKMRFLADASQSTVSLDMPIGKKSGGDPGCATLGSFI 516
EI+ R ++P+ K+R + ++ +SL+ P+G S G LG FI
Sbjct: 489 EIANRLSMPLDKVRKVMKIAKEPISLENPVGDDSDG----GQLGDFI 531
[244][TOP]
>UniRef100_A3PFB9 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
MIT 9301 RepID=A3PFB9_PROM0
Length = 344
Score = 161 bits (408), Expect = 2e-38
Identities = 79/154 (51%), Positives = 111/154 (72%)
Frame = +1
Query: 7 DMDVAALRRQLRCGLRAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEK 186
++ + ++++LR G RAKERMV+ANLRLVVS+AKKY R + L DLIQEG+IGL+RG EK
Sbjct: 93 NLSTSVIKKRLRAGQRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEK 152
Query: 187 YDASKGFRFSTYATWWIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAP 366
+D ++G++FSTYA WWIRQ ITRAIA+ SR IRLP+H+ + L L+K + LS E+ R P
Sbjct: 153 FDPARGYKFSTYAYWWIRQGITRAIAEKSRAIRLPIHITEMLNKLKKGQRELSQEMSRTP 212
Query: 367 TEAEISARSNLPVAKMRFLADASQSTVSLDMPIG 468
T +E++ LP ++ L + VSL+ +G
Sbjct: 213 TVSELAKYVELPEDDVKDLMCKAGQPVSLETKVG 246
[245][TOP]
>UniRef100_A2CB42 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
MIT 9303 RepID=A2CB42_PROM3
Length = 313
Score = 161 bits (408), Expect = 2e-38
Identities = 85/163 (52%), Positives = 115/163 (70%)
Frame = +1
Query: 28 RRQLRCGLRAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEKYDASKGF 207
RR +R G RAKERM+ ANLRLVVS+AKKY +GL L DLIQEGS+GL R EK+D ++G+
Sbjct: 69 RRMIRIGRRAKERMMKANLRLVVSVAKKYQGKGLELLDLIQEGSLGLERAVEKFDPTRGY 128
Query: 208 RFSTYATWWIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAPTEAEISA 387
+FSTYA WWIRQ++TRAIA SR IRLPVH+++ L +RK S L+ +LG P+ +EI+
Sbjct: 129 KFSTYAFWWIRQSMTRAIACQSRTIRLPVHLSERLTTIRKVSLDLAHKLGAMPSRSEIAE 188
Query: 388 RSNLPVAKMRFLADASQSTVSLDMPIGKKSGGDPGCATLGSFI 516
++PV ++ L + +T SLD P+ G+ G + LG I
Sbjct: 189 AMDIPVDELDSLLRQALTTSSLDAPV----NGEEGRSFLGDLI 227
[246][TOP]
>UniRef100_C3PLZ4 RNA polymerase sigma factor n=2 Tax=spotted fever group
RepID=C3PLZ4_RICAE
Length = 634
Score = 161 bits (408), Expect = 2e-38
Identities = 82/167 (49%), Positives = 118/167 (70%)
Frame = +1
Query: 16 VAALRRQLRCGLRAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEKYDA 195
V +++ R L+AK+ M+ ANLRLV+SIAKKY NRGL DLIQEG+IGL++ +K++
Sbjct: 368 VNTIQKSERQTLQAKKDMIEANLRLVISIAKKYANRGLQFLDLIQEGNIGLMKAVDKFEY 427
Query: 196 SKGFRFSTYATWWIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAPTEA 375
+G++FSTYATWWIRQAITRAIAD +R IR+PVH+ +T+ + +TS+ + ELG PT
Sbjct: 428 RRGYKFSTYATWWIRQAITRAIADQARTIRIPVHMIETINKILRTSRQMLNELGYEPTAT 487
Query: 376 EISARSNLPVAKMRFLADASQSTVSLDMPIGKKSGGDPGCATLGSFI 516
EI+ R ++P+ K+R + ++ +SL+ P+G S G LG FI
Sbjct: 488 EIANRLSMPLDKVRKVMKIAKEPISLENPVGDDSDG----GQLGDFI 530
[247][TOP]
>UniRef100_C9MZ09 RNA polymerase sigma factor RpoD n=1 Tax=Leptotrichia hofstadii
F0254 RepID=C9MZ09_9FUSO
Length = 392
Score = 161 bits (408), Expect = 2e-38
Identities = 73/146 (50%), Positives = 110/146 (75%)
Frame = +1
Query: 55 AKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEKYDASKGFRFSTYATWW 234
AK++++ +NLRLVVSIAKK+ NRGL + DLIQEG++GL++ EK++ KGF+FSTYATWW
Sbjct: 155 AKQKLIESNLRLVVSIAKKHTNRGLKMLDLIQEGNMGLMKAVEKFEYEKGFKFSTYATWW 214
Query: 235 IRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAPTEAEISARSNLPVAKM 414
IRQAITRAIAD R IR+PVH+ +T+ ++K S+++ E G+ PT E++ + LPV K+
Sbjct: 215 IRQAITRAIADQGRTIRIPVHMIETINKIKKESRIILQETGKEPTAEELAEKLELPVEKV 274
Query: 415 RFLADASQSTVSLDMPIGKKSGGDPG 492
+ + + +Q +SL+ P+G + + G
Sbjct: 275 KSILEMNQDPISLETPVGSEEDSELG 300
[248][TOP]
>UniRef100_C7TJI1 RNA polymerase sigma factor n=1 Tax=Lactobacillus rhamnosus Lc 705
RepID=C7TJI1_LACRL
Length = 416
Score = 161 bits (408), Expect = 2e-38
Identities = 85/171 (49%), Positives = 116/171 (67%)
Frame = +1
Query: 4 TDMDVAALRRQLRCGLRAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAE 183
TD +VA + + AK+R+ ANLRLVVSIAK+Y+ RG+ DLIQEG++GL++ E
Sbjct: 162 TDEEVALALKIEQGDQEAKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVE 221
Query: 184 KYDASKGFRFSTYATWWIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRA 363
K+D KGF+FSTYATWWIRQAITRAIAD +R IR+PVH+ +T+ L + + L +LGR
Sbjct: 222 KFDYRKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGRE 281
Query: 364 PTEAEISARSNLPVAKMRFLADASQSTVSLDMPIGKKSGGDPGCATLGSFI 516
PT EI A ++P K+R + +Q VSL+ PIG++ + LG FI
Sbjct: 282 PTPEEIGAEMDMPTEKVREILKIAQEPVSLETPIGEEDD-----SHLGDFI 327
[249][TOP]
>UniRef100_C7NC70 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1
Tax=Leptotrichia buccalis DSM 1135 RepID=C7NC70_LEPBD
Length = 392
Score = 161 bits (408), Expect = 2e-38
Identities = 73/146 (50%), Positives = 110/146 (75%)
Frame = +1
Query: 55 AKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAEKYDASKGFRFSTYATWW 234
AK++++ +NLRLVVSIAKK+ NRGL + DLIQEG++GL++ EK++ KGF+FSTYATWW
Sbjct: 155 AKQKLIESNLRLVVSIAKKHTNRGLKMLDLIQEGNMGLMKAVEKFEYEKGFKFSTYATWW 214
Query: 235 IRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRAPTEAEISARSNLPVAKM 414
IRQAITRAIAD R IR+PVH+ +T+ ++K S+++ E G+ PT E++ + LPV K+
Sbjct: 215 IRQAITRAIADQGRTIRIPVHMIETINKIKKESRIILQETGKEPTAEELAEKLELPVEKV 274
Query: 415 RFLADASQSTVSLDMPIGKKSGGDPG 492
+ + + +Q +SL+ P+G + + G
Sbjct: 275 KSILEMNQDPISLETPVGSEEDSELG 300
[250][TOP]
>UniRef100_C6LFQ8 RNA polymerase sigma factor n=1 Tax=Bryantella formatexigens DSM
14469 RepID=C6LFQ8_9FIRM
Length = 374
Score = 161 bits (408), Expect = 2e-38
Identities = 84/171 (49%), Positives = 118/171 (69%)
Frame = +1
Query: 4 TDMDVAALRRQLRCGLRAKERMVSANLRLVVSIAKKYLNRGLLLQDLIQEGSIGLIRGAE 183
T+ +V +R AK+R++ ANLRLVVSIAKKY+ RG+ DLIQEG++GL++ +
Sbjct: 120 TEEEVELAKRVEAGDEEAKKRLIEANLRLVVSIAKKYVGRGMPFLDLIQEGNMGLMKAVD 179
Query: 184 KYDASKGFRFSTYATWWIRQAITRAIADHSRPIRLPVHVNDTLAALRKTSKLLSVELGRA 363
K+D +KGF+FSTYATWWIRQAITR IAD R IR+PVH+ +T+ + ++ L ELGR
Sbjct: 180 KFDYAKGFKFSTYATWWIRQAITRGIADTGRTIRVPVHMVETINKTLRMTRTLLQELGRE 239
Query: 364 PTEAEISARSNLPVAKMRFLADASQSTVSLDMPIGKKSGGDPGCATLGSFI 516
PT E++ R N+PV+++R + S+ VSLD PIG++ + LG FI
Sbjct: 240 PTPEEVAERLNVPVSRVREVLKISRDPVSLDTPIGEEDD-----SHLGDFI 285