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[1][TOP]
>UniRef100_B8JBA1 Transcriptional regulator, Fis family n=1 Tax=Anaeromyxobacter
dehalogenans 2CP-1 RepID=B8JBA1_ANAD2
Length = 613
Score = 62.4 bits (150), Expect = 2e-08
Identities = 76/221 (34%), Positives = 80/221 (36%), Gaps = 44/221 (19%)
Frame = -2
Query: 532 G*RGGQRIPPIPRRR----RRRQRAQDAAGGHHERRRR--GTGRPPQQ---------RPA 398
G G P P RR R RA A G RRR GTGRPP++ RPA
Sbjct: 335 GPAGDASAPEWPGRRFARPERADRAPRGASGERPPRRRTPGTGRPPERGGRPPRTGDRPA 394
Query: 397 --ARGRPWWPPPRRPRPC*RWRRGGSPRDA----------PAAGGAPEDT---P*RAKGG 263
GRP P P RPR R G P A PAAG +P P R G
Sbjct: 395 RTGAGRPAGPQPWRPRTPDRRGAGPGPGPARPGAGGGEGSPAAGASPRPARSGPGRPGGF 454
Query: 262 TVVAGDGVKKSGGRTTGQRERPTKGETVG-------GRPGGVDNDRGD--EGDEGNTQRT 110
G G GR TG G G GRPGG G GD G
Sbjct: 455 ARPGGPGRPGGFGRPTGPGRPGGTGRPGGFARPGGPGRPGGFGRPTGSGRAGDSGRPGGP 514
Query: 109 GRCEGGMAAIRMTATAGCPRGSSSGSGR-----RAGEAGRP 2
GR GG G P G GSGR R G +GRP
Sbjct: 515 GR-PGGFGRPGGFGRPGGP-GRPGGSGRPGGSGRPGASGRP 553
[2][TOP]
>UniRef100_Q2IMJ3 LigA n=1 Tax=Anaeromyxobacter dehalogenans 2CP-C RepID=Q2IMJ3_ANADE
Length = 808
Score = 56.2 bits (134), Expect = 1e-06
Identities = 62/186 (33%), Positives = 72/186 (38%), Gaps = 13/186 (6%)
Frame = -2
Query: 526 RGGQRI--PPIPRRRR------RRQRAQDAAGGHHERRRRGTGRPPQQRPAARGRPWWPP 371
RG R+ P PR RR RR R + GG RR RP + RP R RP
Sbjct: 174 RGEARVLPRPAPRARRVPGAGARRHRRDEGRGGRARRR----ARPARARPRGRARPRRRA 229
Query: 370 ---PRRPRPC*RWRRGGSPRDAPAAGGAPEDTP*RAKGGTVV--AGDGVKKSGGRTTGQR 206
R RP R R G +PR PA G P A G A GV+++G R +R
Sbjct: 230 RGAAGRGRPG-RRRAGRAPRGPPAPAGGERVHPPLALRGAERDDAAAGVRRAGDRGADRR 288
Query: 205 ERPTKGETVGGRPGGVDNDRGDEGDEGNTQRTGRCEGGMAAIRMTATAGCPRGSSSGSGR 26
R GG RG G G R G GG R AG + +G GR
Sbjct: 289 RR-----------GGARAARGRAGRGGGGARAGHGRGGGRPRRRARRAG--GRARAGRGR 335
Query: 25 RAGEAG 8
R AG
Sbjct: 336 RRARAG 341
[3][TOP]
>UniRef100_Q0ISD4 Os11g0533100 protein (Fragment) n=2 Tax=Oryza sativa Japonica Group
RepID=Q0ISD4_ORYSJ
Length = 823
Score = 55.5 bits (132), Expect = 2e-06
Identities = 60/176 (34%), Positives = 69/176 (39%), Gaps = 8/176 (4%)
Frame = -2
Query: 508 PPIPRRRRRRQRAQDAAGGHHERRR--RGTGRPPQQRPAARGRPWWPPPRRPRPC*RWRR 335
PP P R RR R + G H R R RGT R +P PPPR R
Sbjct: 21 PPAPPRAPRRGRGR---GRRHHRGRGVRGTRRHRAAQP--------PPPRARAAAGRVVV 69
Query: 334 GGSPRDAPAAGGAPEDTP*RAKGGTVVA----GDGVKKSGGRTTGQRERPTKGETVGGRP 167
GG R A GG P P A G A G G GG G+R R +GE GG
Sbjct: 70 GGLVRGPGAGGGVPAHDPGAAADGATSAARGRGRGGVSGGGERRGRRRR-GRGEEEGGGG 128
Query: 166 GG--VDNDRGDEGDEGNTQRTGRCEGGMAAIRMTATAGCPRGSSSGSGRRAGEAGR 5
GG V + G G G R + EG +R+ G R RR G+A R
Sbjct: 129 GGELVGSPGGPAGAGGRGVRRAQ-EGRRRQVRLHQRRGRSRLRLHTVRRRHGQARR 183
[4][TOP]
>UniRef100_Q2IIH7 PE-PGRS family protein n=1 Tax=Anaeromyxobacter dehalogenans 2CP-C
RepID=Q2IIH7_ANADE
Length = 677
Score = 55.1 bits (131), Expect = 3e-06
Identities = 62/201 (30%), Positives = 72/201 (35%), Gaps = 31/201 (15%)
Frame = -2
Query: 517 QRIPPIPRRRRRRQRAQDAA------GGHHERRRRGTGRPPQQRPAARGRPWWPPPRRP- 359
+R P +PRRRR R AA GG RRRR R P R A R R P RR
Sbjct: 24 RRGPRLPRRRRSRLAGAGAARRGGPRGGRARRRRRA--RRPDGRAARRQRRGAPGGRRGV 81
Query: 358 RPC*RWRRGGSPRDAPAAGGAPEDTP*RAKG--------GTVVAGDGVK----------- 236
R R R G AP G RA+ G A G++
Sbjct: 82 RGARRGRGGRGAGGAPGGSGRDGGGRGRARARRHAGPAAGARRAARGLRGRLARRARRHR 141
Query: 235 ---KSGGRTTGQRERPTKGETVGGRPGGVDNDRGDEGDEGNTQRTGRCEGGMAAIRMTAT 65
+ GGR + R +G +PGG RG G R R G A R A
Sbjct: 142 RRARRGGRLAARGGRAGGARALGAQPGGPGRPRGGSRGRGGGDRRERPGRGGGAARAAAR 201
Query: 64 AGCPRG--SSSGSGRRAGEAG 8
G G + G G RAG G
Sbjct: 202 PGAQPGPRARRGRGARAGRGG 222
[5][TOP]
>UniRef100_Q82K53 Translation initiation factor IF-2 n=1 Tax=Streptomyces avermitilis
RepID=IF2_STRAW
Length = 1046
Score = 55.1 bits (131), Expect = 3e-06
Identities = 63/195 (32%), Positives = 75/195 (38%), Gaps = 21/195 (10%)
Frame = -2
Query: 523 GGQRIPPIPRRRRRRQRAQDAAGGHHERRRRGTGRPPQQRPAARGRPWWPPPRRPRPC*R 344
GG+ P R+ A+ A + R RPP +PAA RP P
Sbjct: 55 GGKAAP------RKAAPAKPGAPSPAQAARPAAPRPPAPKPAAAERPAAAERPAAAPAAP 108
Query: 343 WRRGG---SPRDAPAAGG--APEDT-P*RAKGGTVVAGDGVK---KSGGRTTGQRERPTK 191
R G +PR APAA APE T P A A G + + G G T
Sbjct: 109 GPRPGPKPAPRPAPAAPAPAAPEFTAPPSAPAAPAAAASGPRPGARPGAPKPGGARPATP 168
Query: 190 GETVGGRPGGVDNDRGDEGDEGNTQRTGRCEGGMAAIRMTATAGCPR--------GSSSG 35
G+ GG+ G DRGD GD G+ R G G A R A PR G S+G
Sbjct: 169 GQGQGGQVRGERTDRGDRGDRGD--RQGAARPGGQAPRPGARPAGPRPGNNPFTSGGSTG 226
Query: 34 SGR----RAGEAGRP 2
R R G A RP
Sbjct: 227 MARPQAPRPGGAPRP 241
[6][TOP]
>UniRef100_A4FBY5 Putative uncharacterized protein n=1 Tax=Saccharopolyspora
erythraea NRRL 2338 RepID=A4FBY5_SACEN
Length = 394
Score = 54.7 bits (130), Expect = 4e-06
Identities = 47/152 (30%), Positives = 62/152 (40%), Gaps = 13/152 (8%)
Frame = +3
Query: 3 GRPASPARRPLPLLLPR--GQPAVAVIRIAAIP----PSHLPVRCVFPSSPSSPLSLSTP 164
G P P RPLPL P G+P + + ++ +P PS P P P++ P
Sbjct: 173 GNPLPPPPRPLPLPPPPLPGKPPIDICKLIPLPFVCGPSKPP--------PPPPVTPPPP 224
Query: 165 PGRPPTVSPFVGLSLCPVVLPPLF---FTPSPATTVPPFARHGV--SSGAPPAAGASRGD 329
P PP V+P ++ PV PP+ TP P T PP +G + GAP G G
Sbjct: 225 PVTPPPVTPPPPVTPPPVTPPPVTPPPVTPPPVTPPPPDTGNGKPDTGGAPNPGGTDNGG 284
Query: 330 PPRRHR*QGRGRRGGGHH--GRPRAAGRCCGG 419
G GGG + G G GG
Sbjct: 285 TDNGGTDNGGTDNGGGGYTGGGSYGGGEYTGG 316
[7][TOP]
>UniRef100_A8P363 LF3, putative n=1 Tax=Brugia malayi RepID=A8P363_BRUMA
Length = 946
Score = 54.3 bits (129), Expect = 5e-06
Identities = 55/190 (28%), Positives = 68/190 (35%), Gaps = 15/190 (7%)
Frame = -2
Query: 532 G*RGGQRIPPI------PRRRRRRQRAQDAAGGHHERRRRGTGRPPQQRPAARGRPWWPP 371
G R G+R PP P R A+D GG RRG R R + P PP
Sbjct: 85 GRRSGRRRPPAGTTDPPPPPTPRGAEARDGHGG-----RRGRNRESHTRRSPPRDPSEPP 139
Query: 370 PRRPRPC*RWRRGGSPRDAPAAGGAPEDTP*RAKGGTVVAGDGVKKSGGRTTGQRERPTK 191
RR RP R PR A G GV+ G + G + +
Sbjct: 140 ARRTRPRARHTAPIWPRQETAPAGTA----------------GVRGRDGASAGPHTQRQR 183
Query: 190 GETVG---------GRPGGVDNDRGDEGDEGNTQRTGRCEGGMAAIRMTATAGCPRGSSS 38
G T G GR G+D +R G+ T R GR G A+ R T G +
Sbjct: 184 GATPGKSGIADPPSGRSPGIDRERA--GETTPTGRGGRSGGSRASARAGGTGGTRENADR 241
Query: 37 GSGRRAGEAG 8
+G GE G
Sbjct: 242 VAGETGGETG 251
[8][TOP]
>UniRef100_Q1QHE7 OmpA/MotB n=1 Tax=Nitrobacter hamburgensis X14 RepID=Q1QHE7_NITHX
Length = 673
Score = 53.9 bits (128), Expect = 7e-06
Identities = 48/156 (30%), Positives = 59/156 (37%), Gaps = 22/156 (14%)
Frame = +3
Query: 3 GRPASPARRPLPLLLPRGQPAVAVIRIAAIPPSHLPVRCVFPSSPSSPLSLSTPPGRP-- 176
G P PA P P P A R AA PP H+ P P++P +TPP P
Sbjct: 77 GAPERPAAPPPHAAPPHAPPPPAAARPAAPPPPHVTPPTATPPRPATPPPHATPPAAPAA 136
Query: 177 PTVSPFVGLSLCPVVLPPLFFTPSPATTVPPFARHGVSSGAPPAAGAS------------ 320
P +P + PV P P+P T PP + ++ PPAA S
Sbjct: 137 PKAAPAPKPATPPVAPKP----PAPPTAAPPPSPSKGTTPPPPAATKSAPTTPAPQPQTT 192
Query: 321 -------RGDPPRRHR*QGRGRRG-GGHHGRPRAAG 404
G+P R RGR G G HG P G
Sbjct: 193 SPSTPPANGEPNATRR-DERGRSGPGREHGGPGGPG 227
[9][TOP]
>UniRef100_A9VXR1 Pseudouridine synthase n=1 Tax=Methylobacterium extorquens PA1
RepID=A9VXR1_METEP
Length = 669
Score = 53.9 bits (128), Expect = 7e-06
Identities = 54/169 (31%), Positives = 64/169 (37%), Gaps = 4/169 (2%)
Frame = -2
Query: 496 RRRRRRQRAQDAAGGHHERRRRGTGRPPQQRPAARGRPWWPPPRRPRPC*RWRRGGSPRD 317
R R R + H + R RG G P ++RP + GR PP RR P R R R
Sbjct: 503 RPPRERSEGRPQRDFHGDSRERGEGAPRRERP-SEGR---PPERRGPPRDRPRAAEGERP 558
Query: 316 A-PAAGGAPEDTP*RAKGGTVVAGDGVKKSGGRTTGQR---ERPTKGETVGGRPGGVDND 149
A P G D P KG G G KS G G + +G+ GG GG
Sbjct: 559 ARPPRGAEASDRPAFRKGPGKGPGGGAGKSFGGKPGFKGGDRDGARGDFKGGAKGG---P 615
Query: 148 RGDEGDEGNTQRTGRCEGGMAAIRMTATAGCPRGSSSGSGRRAGEAGRP 2
RGD G + GR G A G P G + R G RP
Sbjct: 616 RGDFKPGGGGRPGGRPGGRPGGKPGGAPGGRPGGGGKPAPRGGGRPSRP 664
[10][TOP]
>UniRef100_Q84SQ4 Putative uncharacterized protein OSJNBb0047D08.13 n=1 Tax=Oryza
sativa Japonica Group RepID=Q84SQ4_ORYSJ
Length = 286
Score = 53.9 bits (128), Expect = 7e-06
Identities = 60/203 (29%), Positives = 74/203 (36%), Gaps = 36/203 (17%)
Frame = -2
Query: 502 IPRRRRRRQRAQDAAGGHHERRRRGTGRPPQ--QRPAARGRPWWPPPRRPRPC*RWRRGG 329
+PR R + R + AG H +R GRP + +R AAR R P RR RP RW GG
Sbjct: 48 VPRVSRTQGRGRLTAGPHAVATQRARGRPCRRGRREAARPR---PDGRRRRPSARW-SGG 103
Query: 328 SPRDA-----------PAAGGAPEDTP*RAKGGTVVAGDG-------------VKKSGGR 221
R+ P A A E+ GG DG V + G
Sbjct: 104 QEREGKGERRRRSTAHPGATAATEEAAGAEGGGGAARVDGVDGVPAVGDRNGEVDEVGED 163
Query: 220 TTGQRERPTKGETVGGRPGGVDNDRGDEGD----------EGNTQRTGRCEGGMAAIRMT 71
+E + E V G GG GD GD E +R +GG AA+
Sbjct: 164 AANPKEAAPRWEAVRGDDGGGPELGGDGGDRERRRELESSEEEGRREAETDGGAAAL--- 220
Query: 70 ATAGCPRGSSSGSGRRAGEAGRP 2
G GSG R G G P
Sbjct: 221 -----GAGGGGGSGGRKGMTGGP 238
[11][TOP]
>UniRef100_C7CI29 Pseudouridine synthase n=1 Tax=Methylobacterium extorquens DM4
RepID=C7CI29_METED
Length = 669
Score = 53.5 bits (127), Expect = 9e-06
Identities = 51/166 (30%), Positives = 59/166 (35%), Gaps = 1/166 (0%)
Frame = -2
Query: 496 RRRRRRQRAQDAAGGHHERRRRGTGRPPQQRPAARGRPWWPPPRRPRPC*RWRRGGSPRD 317
R R R + H + R RG G P ++RP + GR PP RR P R R R
Sbjct: 503 RPPRERSEGRPQRDFHGDSRERGEGAPRRERP-SEGR---PPERRGPPRDRPRAAEGERP 558
Query: 316 A-PAAGGAPEDTP*RAKGGTVVAGDGVKKSGGRTTGQRERPTKGETVGGRPGGVDNDRGD 140
A P G D P KG G G KS G G + G + G RGD
Sbjct: 559 ARPPRGAEASDRPAFRKGPAKGPGGGAGKSFGGKLGFKGGDRDGARGDFKSGAKGGPRGD 618
Query: 139 EGDEGNTQRTGRCEGGMAAIRMTATAGCPRGSSSGSGRRAGEAGRP 2
G + GR G A G P G R G RP
Sbjct: 619 FKPGGGGRPGGRPGGRPGGKPGGAPGGRPGGGGKPGPRGGGRPSRP 664
[12][TOP]
>UniRef100_A4TCF8 Translation initiation factor IF-2 n=1 Tax=Mycobacterium gilvum
PYR-GCK RepID=IF2_MYCGI
Length = 930
Score = 53.5 bits (127), Expect = 9e-06
Identities = 50/141 (35%), Positives = 58/141 (41%), Gaps = 1/141 (0%)
Frame = -2
Query: 427 TGRPPQQRPAARGR-PWWPPPRRPRPC*RWRRGGSPRDAPAAGGAPEDTP*RAKGGTVVA 251
+ + P +RPA R + P P RP P G P P G P + P R GG
Sbjct: 168 SSQQPVERPAPRPQGPAGPGGPRPGP---GAGGPRPGGGPRPGATPGNMPPRPVGGPRPG 224
Query: 250 GDGVKKSGGRTTGQRERPTKGETVGGRPGGVDNDRGDEGDEGNTQRTGRCEGGMAAIRMT 71
G G + GG G RPT G GRPGG G GN + G GG A
Sbjct: 225 G-GPRPGGGPRPGAGPRPTPGG--AGRPGG--------GGGGNYRGGGAGGGGGAG---G 270
Query: 70 ATAGCPRGSSSGSGRRAGEAG 8
A AG RG G G R G+ G
Sbjct: 271 AAAGGFRGRPGGGGGRPGQRG 291