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[1][TOP]
>UniRef100_Q5YQW7 Putative ATP-dependent RNA helicase n=1 Tax=Nocardia farcinica
            RepID=Q5YQW7_NOCFA
          Length = 1148

 Score = 57.8 bits (138), Expect = 4e-07
 Identities = 55/166 (33%), Positives = 70/166 (42%), Gaps = 19/166 (11%)
 Frame = +1

Query: 31   GEKAGAAAGGPVPRTRD----SSDAIRADGSAD--------DRPTAPRARRRRPAAAAGP 174
            G+ A  +   P PR R     + DA+ A  +AD        ++  APR R R+   A   
Sbjct: 810  GDAAAPSEEAPAPRRRTRKAATEDAVAATATADTGEAATSSEQAPAPRRRTRKATTATPA 869

Query: 175  AAAAADAASAGADDSA--AAATSR----PRRPRRRSVVEEAAVVAPDAV-TSTLPHTSPV 333
            AA A DA SA A  S   AAA S     PRR  R++    A V A  A  TST   T+P 
Sbjct: 870  AATATDAVSATAPASTGEAAAPSEEAPAPRRRTRKATTAPADVTAAQAADTSTADLTAPT 929

Query: 334  ADDRGSGLDAPAVGAPPPDFDGTASPVSLSPARTFRHVGFADADSG 471
            A     G  A +  A P D   +A        R  R    A A++G
Sbjct: 930  ASTAADGGAASSAAAAPAD-TASADAAPAPRRRATRKSAAATAETG 974

[2][TOP]
>UniRef100_B8H5Y1 Multimodular transpeptidase-transglycosylase PBP 1A n=2
           Tax=Caulobacter vibrioides RepID=B8H5Y1_CAUCN
          Length = 794

 Score = 55.8 bits (133), Expect = 1e-06
 Identities = 42/120 (35%), Positives = 54/120 (45%), Gaps = 1/120 (0%)
 Frame = +1

Query: 112 ADDRPTAPRARRRRPAAAAGPAAAAADAASAGADDSAAA-ATSRPRRPRRRSVVEEAAVV 288
           ADD P AP  + RRP     P A      +AG D +A   A  +PRRPR+    +  AV 
Sbjct: 8   ADDVPAAPAPKPRRPRK---PRAQTVMTEAAGLDPAAPEDAAQKPRRPRKSRRAQPEAVA 64

Query: 289 APDAVTSTLPHTSPVADDRGSGLDAPAVGAPPPDFDGTASPVSLSPARTFRHVGFADADS 468
           AP+A T T   ++   DD  + L  P    P P+ D     V   PA T      AD +S
Sbjct: 65  APEAQTPTT--STAATDDADADLFEP---LPSPEPDAEPVSVEADPAETLEADAAADLES 119

[3][TOP]
>UniRef100_Q0W1C4 Putative uncharacterized protein n=1 Tax=uncultured methanogenic
           archaeon RC-I RepID=Q0W1C4_UNCMA
          Length = 1126

 Score = 54.7 bits (130), Expect = 3e-06
 Identities = 46/141 (32%), Positives = 63/141 (44%)
 Frame = -2

Query: 461 ASAKPTCLKVRAGESDTGEAVPSKSGGGAPTAGASRPLPLSSATGEVCGRVDVTASGATT 282
           ASA        A       A  + +   A  AG       +SAT    G     A GA+ 
Sbjct: 363 ASAAAAAAAAAASNGAGPGAAAAVAAASAAAAGGGNAAAAASATASALGG----AGGASA 418

Query: 281 AASSTTERRRGRRGRLVAAAALSSAPALAASAAAAAGPAAAAGRRRLALGAVGRSSALPS 102
           AA++ +    G  G   AAAA ++A A   +AAAAA  AA+A      LG +G +S++ S
Sbjct: 419 AAAAASAAAAGGPGAAAAAAAATAAAAGGGNAAAAASAAASA------LGGIGGASSVAS 472

Query: 101 ALMASEESRVRGTGPPAAAPA 39
           A  A+  + V   G  AAA A
Sbjct: 473 AASAAASAGVAPGGVAAAAAA 493

[4][TOP]
>UniRef100_Q1NFB1 Ribonuclease, Rne/Rng family protein n=1 Tax=Sphingomonas sp. SKA58
            RepID=Q1NFB1_9SPHN
          Length = 911

 Score = 54.7 bits (130), Expect = 3e-06
 Identities = 48/140 (34%), Positives = 65/140 (46%), Gaps = 5/140 (3%)
 Frame = +1

Query: 4    RQRRRDLTDGEKAGAAAGGPVPRTRDSSDAIRADGSADDRPTAPRARRRRPAAAAGPAAA 183
            R R++  +D  +A A A  P      +++       AD  P  P+  RR+ A A+  AAA
Sbjct: 755  RARKKADSDTAEAAATAEAPAEVAPVATEEPAPAPEADAAPAKPKRTRRKKAVASEGAAA 814

Query: 184  AAD--AASAGADDSAAAATSRPRRPRRRSVV---EEAAVVAPDAVTSTLPHTSPVADDRG 348
             AD  AA A A D A AA ++P+R RR+ VV    EAA  A +AV       +PVA    
Sbjct: 815  EADTPAADAPAAD-ADAAPAKPKRTRRKKVVAVEAEAAEPAVEAVPQAPADAAPVAQPE- 872

Query: 349  SGLDAPAVGAPPPDFDGTAS 408
                 P   A P   D  A+
Sbjct: 873  -----PTASAEPVPADAAAA 887

[5][TOP]
>UniRef100_B0RFB7 Putative ABC transporter, ATP-binding protein n=1 Tax=Clavibacter
           michiganensis subsp. sepedonicus RepID=B0RFB7_CLAMS
          Length = 647

 Score = 53.9 bits (128), Expect = 5e-06
 Identities = 51/145 (35%), Positives = 68/145 (46%), Gaps = 8/145 (5%)
 Frame = +1

Query: 55  GGPVPRTRDSSDAIRADGSADDRPTAPRARRRRPAAAAGPAAAAADAASAGADDSAAAAT 234
           G  VPR R ++ + R   +    PT PR +   P +   P + +  AA+ G D  +AA T
Sbjct: 63  GQRVPR-RATAPSPRTAPAVIVAPTPPRVK---PTSVVAPVSRSTAAAAEG-DGGSAATT 117

Query: 235 SRPRRPRRRSVVEEA---AVVAPDAVTSTLPHTSPVADDRGSGLDAPAVGAPPPDFDGTA 405
           SRP R RRR+ V+ A   A VAP A + T P   PV D+  +G  A +   P  D D   
Sbjct: 118 SRPPRVRRRTRVQRAAGSAEVAPGAGSGTAP--GPVDDETAAGSTAGSAATPVKDPDAAP 175

Query: 406 --SPVSLSPAR---TFRHVGFADAD 465
              P +  P R   T     F DAD
Sbjct: 176 QDGPEATRPDRDGLTELSSMFTDAD 200

[6][TOP]
>UniRef100_C5X278 Putative uncharacterized protein Sb02g026310 n=1 Tax=Sorghum
           bicolor RepID=C5X278_SORBI
          Length = 442

 Score = 53.5 bits (127), Expect = 7e-06
 Identities = 43/139 (30%), Positives = 56/139 (40%), Gaps = 5/139 (3%)
 Frame = +1

Query: 40  AGAAAGGPVPRTRDS-SDAIRADGSADDRPTAPRARRRRPAAAAGPAAAAADAASAGADD 216
           A  AA G      D+ +DA     S+      P       +AAAGP +AA D+ +AG+D 
Sbjct: 7   AAVAASGSASEASDAEADAAHHQPSSPSPSKTPPPNPNPKSAAAGPTSAAEDSTAAGSDS 66

Query: 217 SAAAATSRPRRPRRRSVVEEAAVVAPDAVTSTLPHTSPVADDRGSGLDAPAVGAPPPDFD 396
            AA  +    RP  R     AA        S  P +   + D  S  D  A  A P   D
Sbjct: 67  EAAYDSDADHRPAPRKAAAAAASSPSRKPRSPRPRSRSRSPDAASYSDVAASDADPTAGD 126

Query: 397 G----TASPVSLSPARTFR 441
                 ASP++L P R  R
Sbjct: 127 SADDDNASPLALRPPRPSR 145