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[1][TOP]
>UniRef100_O04142 DNA-directed RNA polymerase (Fragment) n=1 Tax=Porphyra yezoensis
            RepID=O04142_PORYE
          Length = 1685

 Score =  350 bits (897), Expect = 5e-95
 Identities = 179/179 (100%), Positives = 179/179 (100%)
 Frame = +2

Query: 2    IAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFT 181
            IAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFT
Sbjct: 946  IAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFT 1005

Query: 182  WLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQE 361
            WLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQE
Sbjct: 1006 WLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQE 1065

Query: 362  IINVSKRTKTPSLVVYLRGDAVHDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENTI 538
            IINVSKRTKTPSLVVYLRGDAVHDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENTI
Sbjct: 1066 IINVSKRTKTPSLVVYLRGDAVHDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENTI 1124

[2][TOP]
>UniRef100_Q9AXN0 DNA-directed RNA polymerase n=1 Tax=Glaucosphaera vacuolata
            RepID=Q9AXN0_9RHOD
          Length = 1746

 Score =  228 bits (580), Expect = 3e-58
 Identities = 114/159 (71%), Positives = 133/159 (83%)
 Frame = +2

Query: 62   KELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEM 241
            ++L+  AQ NATLL+ +H+RA LASKV+L E+RL +KAF  LL EIENRF  A  P GEM
Sbjct: 1022 RQLAVEAQENATLLWSIHIRAFLASKVILKEYRLDKKAFMHLLGEIENRFLHAKCPPGEM 1081

Query: 242  VGATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGD 421
            +GA A QSIGEPATQMTLNTFH+AGVSAKNVTLGVPRL+EIINV+K  KTPSL VYLRG+
Sbjct: 1082 IGAVAPQSIGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVAKHCKTPSLTVYLRGE 1141

Query: 422  AVHDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENTI 538
            A  DAERAKQVQAELQHTTL HVT  TE+YYDP+ ++T+
Sbjct: 1142 AARDAERAKQVQAELQHTTLNHVTQSTEIYYDPNPQDTV 1180

[3][TOP]
>UniRef100_Q30BD9 DNA-directed RNA polymerase n=1 Tax=Glaucocystis nostochinearum
            RepID=Q30BD9_9EUKA
          Length = 1852

 Score =  220 bits (560), Expect = 6e-56
 Identities = 113/157 (71%), Positives = 132/157 (84%)
 Frame = +2

Query: 68   LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
            LS  AQ NAT+LFQ+ VR+ LASK VL+E+RLT  AF WLL EIE+RF QA+A  GEMVG
Sbjct: 1016 LSVEAQANATMLFQILVRSCLASKRVLTEYRLTSHAFEWLLGEIESRFLQAIANPGEMVG 1075

Query: 248  ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
            A AAQSIGEPATQMTLNTFHYAGVS+KNVTLGVPRL+EIINV+K+ KTPSLVVYL+    
Sbjct: 1076 AIAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEIINVAKKVKTPSLVVYLKEYCR 1135

Query: 428  HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENTI 538
             D+E+AK VQ +L+ TTLRHVT  TE+YYDPDL+NT+
Sbjct: 1136 RDSEKAKAVQCQLEFTTLRHVTAATEIYYDPDLQNTV 1172

[4][TOP]
>UniRef100_UPI00019270E9 PREDICTED: similar to DNA-directed RNA polymerase II subunit RPB1
            isoform 2 n=1 Tax=Hydra magnipapillata
            RepID=UPI00019270E9
          Length = 2014

 Score =  214 bits (546), Expect = 2e-54
 Identities = 108/158 (68%), Positives = 128/158 (81%)
 Frame = +2

Query: 65   ELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMV 244
            +LS+ AQLNAT+LFQ+H+R++L SK V+ E RLT +AF WLL E+E+RF  A A  GEMV
Sbjct: 1028 KLSKEAQLNATMLFQIHLRSTLCSKRVIEEFRLTSEAFDWLLGEVESRFNLAQAQPGEMV 1087

Query: 245  GATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDA 424
            GA AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ KTPSL V+L G A
Sbjct: 1088 GALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKKPKTPSLTVFLLGQA 1147

Query: 425  VHDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENTI 538
              DAE AK V   L+HTTLR VT  T ++YDPD +NT+
Sbjct: 1148 ARDAEHAKDVLCRLEHTTLRKVTANTAIFYDPDPQNTV 1185

[5][TOP]
>UniRef100_UPI00019270BB PREDICTED: similar to DNA-directed RNA polymerase II subunit RPB1
            isoform 1 n=1 Tax=Hydra magnipapillata
            RepID=UPI00019270BB
          Length = 2041

 Score =  214 bits (546), Expect = 2e-54
 Identities = 108/158 (68%), Positives = 128/158 (81%)
 Frame = +2

Query: 65   ELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMV 244
            +LS+ AQLNAT+LFQ+H+R++L SK V+ E RLT +AF WLL E+E+RF  A A  GEMV
Sbjct: 1029 KLSKEAQLNATMLFQIHLRSTLCSKRVIEEFRLTSEAFDWLLGEVESRFNLAQAQPGEMV 1088

Query: 245  GATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDA 424
            GA AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ KTPSL V+L G A
Sbjct: 1089 GALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKKPKTPSLTVFLLGQA 1148

Query: 425  VHDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENTI 538
              DAE AK V   L+HTTLR VT  T ++YDPD +NT+
Sbjct: 1149 ARDAEHAKDVLCRLEHTTLRKVTANTAIFYDPDPQNTV 1186

[6][TOP]
>UniRef100_O01375 DNA-directed RNA polymerase (Fragment) n=1 Tax=Teratorhabditis
           palmarum RepID=O01375_9BILA
          Length = 631

 Score =  214 bits (545), Expect = 3e-54
 Identities = 108/157 (68%), Positives = 127/157 (80%)
 Frame = +2

Query: 68  LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
           +S+ AQ NATLL  + +R++L SK V S H+L  +AF WLL EIE+RF+QA+A  GEMVG
Sbjct: 234 ISKQAQYNATLLMNILIRSTLCSKRVASMHKLNNEAFDWLLGEIEHRFKQAIAQPGEMVG 293

Query: 248 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
           A AAQS+GEPATQMTLNTFH+AGVSAKNVTLGVPRL+EIINVSK+ KTPSL +YL G A 
Sbjct: 294 ALAAQSLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSKKPKTPSLTIYLTGAAA 353

Query: 428 HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENTI 538
            DAERAK+VQ  L+HTTLR VT  T +YYDPD  NTI
Sbjct: 354 RDAERAKEVQCRLEHTTLRKVTSNTAIYYDPDPRNTI 390

[7][TOP]
>UniRef100_O09451 DNA-directed RNA polymerase (Fragment) n=1 Tax=Bonnemaisonia hamifera
            RepID=O09451_9FLOR
          Length = 1732

 Score =  211 bits (536), Expect = 3e-53
 Identities = 107/171 (62%), Positives = 127/171 (74%)
 Frame = +2

Query: 26   DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 205
            +G+    +   +  L + AQ NATLLFQ+H+R+ LA K ++  HRLT KAF WLL E+EN
Sbjct: 940  EGNPIDEKPTMVDPLMKEAQENATLLFQIHMRSMLACKKLIQLHRLTFKAFLWLLGEVEN 999

Query: 206  RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRT 385
            RF       GE +GA AAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK T
Sbjct: 1000 RFMMCRVAPGENIGAIAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKNT 1059

Query: 386  KTPSLVVYLRGDAVHDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENTI 538
            KTPSL VYL+     D E+AK++QA LQHTTL  VT  TE+YYDPD  +T+
Sbjct: 1060 KTPSLTVYLKSQYAGDKEKAKEIQASLQHTTLHDVTQCTEIYYDPDPMDTV 1110

[8][TOP]
>UniRef100_UPI0000546D90 PREDICTED: im:7136071 isoform 1 n=1 Tax=Danio rerio
            RepID=UPI0000546D90
          Length = 1972

 Score =  209 bits (533), Expect = 8e-53
 Identities = 104/158 (65%), Positives = 126/158 (79%)
 Frame = +2

Query: 65   ELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMV 244
            +LS  AQ NATLLF +H+R++L SK +  E RL+ +AF WLL EIE +F Q++A  GEMV
Sbjct: 1025 QLSRQAQENATLLFNIHLRSTLCSKRMTEEFRLSTEAFDWLLGEIETKFNQSIAHPGEMV 1084

Query: 245  GATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDA 424
            GA AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN+SKR KTPSL V+L G A
Sbjct: 1085 GALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKRPKTPSLTVFLLGQA 1144

Query: 425  VHDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENTI 538
              DAERAK +   L+HTTLR VT  T +YYDP+ +NT+
Sbjct: 1145 ARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQNTV 1182

[9][TOP]
>UniRef100_UPI00017B0A92 UPI00017B0A92 related cluster n=1 Tax=Tetraodon nigroviridis
            RepID=UPI00017B0A92
          Length = 1714

 Score =  209 bits (532), Expect = 1e-52
 Identities = 104/157 (66%), Positives = 125/157 (79%)
 Frame = +2

Query: 68   LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
            LS  AQ NATLLF +H+R++L SK +  E RL+ +AF WLL EIE +F Q++A  GEMVG
Sbjct: 1007 LSRQAQQNATLLFNIHLRSTLCSKRMTEEFRLSTEAFDWLLGEIETKFNQSIAHPGEMVG 1066

Query: 248  ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
            A AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN+SKR KTPSL V+L G A 
Sbjct: 1067 ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKRPKTPSLTVFLLGQAA 1126

Query: 428  HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENTI 538
             DAERAK +   L+HTTLR VT  T +YYDP+ +NT+
Sbjct: 1127 RDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQNTV 1163

[10][TOP]
>UniRef100_Q4SF83 DNA-directed RNA polymerase (Fragment) n=1 Tax=Tetraodon nigroviridis
            RepID=Q4SF83_TETNG
          Length = 1745

 Score =  209 bits (532), Expect = 1e-52
 Identities = 104/157 (66%), Positives = 125/157 (79%)
 Frame = +2

Query: 68   LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
            LS  AQ NATLLF +H+R++L SK +  E RL+ +AF WLL EIE +F Q++A  GEMVG
Sbjct: 938  LSRQAQQNATLLFNIHLRSTLCSKRMTEEFRLSTEAFDWLLGEIETKFNQSIAHPGEMVG 997

Query: 248  ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
            A AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN+SKR KTPSL V+L G A 
Sbjct: 998  ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKRPKTPSLTVFLLGQAA 1057

Query: 428  HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENTI 538
             DAERAK +   L+HTTLR VT  T +YYDP+ +NT+
Sbjct: 1058 RDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQNTV 1094

[11][TOP]
>UniRef100_Q9BNQ3 RNA polymerase II largest subunit (Fragment) n=1 Tax=Peripatus sp.
           Per2 RepID=Q9BNQ3_9BILA
          Length = 300

 Score =  208 bits (529), Expect = 2e-52
 Identities = 106/157 (67%), Positives = 123/157 (78%)
 Frame = +2

Query: 68  LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
           +S+ AQ NATLL  + VRA+L SK V  EH+L+ +AF WLL EIE RF QA    GEMVG
Sbjct: 37  ISKQAQENATLLMNILVRATLCSKRVTKEHKLSTEAFEWLLGEIETRFAQAQGQPGEMVG 96

Query: 248 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
           A AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIIN+SK+ KTPSL V+L G A 
Sbjct: 97  ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINISKKPKTPSLTVFLTGQAA 156

Query: 428 HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENTI 538
            DAE+AK V   L+HTTLR VT  T +YYDPD +NT+
Sbjct: 157 RDAEKAKDVLCRLEHTTLRKVTANTAIYYDPDPQNTV 193

[12][TOP]
>UniRef100_UPI00016E658E UPI00016E658E related cluster n=1 Tax=Takifugu rubripes
            RepID=UPI00016E658E
          Length = 1628

 Score =  207 bits (528), Expect = 3e-52
 Identities = 103/157 (65%), Positives = 125/157 (79%)
 Frame = +2

Query: 68   LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
            LS+ AQ NATLLF +H+R++L SK +  E RL+ +AF WLL EIE +F  ++A  GEMVG
Sbjct: 1027 LSKQAQQNATLLFNIHLRSTLCSKRMTEEFRLSTEAFDWLLGEIETKFNHSIAHPGEMVG 1086

Query: 248  ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
            A AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN+SKR KTPSL V+L G A 
Sbjct: 1087 ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKRPKTPSLTVFLLGQAA 1146

Query: 428  HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENTI 538
             DAERAK +   L+HTTLR VT  T +YYDP+ +NT+
Sbjct: 1147 RDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQNTV 1183

[13][TOP]
>UniRef100_A9UEE2 DNA-directed RNA polymerase (Fragment) n=1 Tax=Cephaloboides cf.
           armata SB363 RepID=A9UEE2_9BILA
          Length = 475

 Score =  207 bits (528), Expect = 3e-52
 Identities = 104/156 (66%), Positives = 126/156 (80%)
 Frame = +2

Query: 68  LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
           +S+ AQ NATLL  + +R++L SK + S H+L  +AF WLL EIE RF+QA+A  GEMVG
Sbjct: 228 ISQQAQYNATLLMNILIRSTLCSKKMASTHKLNSEAFEWLLGEIETRFKQAIAQPGEMVG 287

Query: 248 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
           A AAQS+GEPATQMTLNTFH+AGVSAKNVTLGVPRL+EIINVSK+ KTPSL V+L G A 
Sbjct: 288 ALAAQSLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSKQLKTPSLTVFLNGAAA 347

Query: 428 HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENT 535
            DAE+AK V  +L+HTTLR VT  T +YYDPD++NT
Sbjct: 348 KDAEKAKDVLCKLEHTTLRKVTANTAIYYDPDVKNT 383

[14][TOP]
>UniRef100_A9QMF6 RNA polymerase 2 (Fragment) n=1 Tax=Pristionchus pacificus
           RepID=A9QMF6_PRIPA
          Length = 583

 Score =  207 bits (528), Expect = 3e-52
 Identities = 105/156 (67%), Positives = 125/156 (80%)
 Frame = +2

Query: 68  LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
           +S+ AQ NATLL  + VR++L SK +  +HRL  +AF WLL EIE RFQQA+A  GEMVG
Sbjct: 201 ISKQAQYNATLLMNILVRSTLCSKQLAEKHRLNSEAFEWLLGEIETRFQQAIAQPGEMVG 260

Query: 248 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
           A AAQS+GEPATQMTLNTFH+AGVSAKNVTLGVPRL+EIIN+SK+ KTPSL VYL+G A 
Sbjct: 261 ALAAQSLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINISKQPKTPSLTVYLQGAAA 320

Query: 428 HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENT 535
            DAE+AK V  +L+HTTLR VT  T +YYDPD + T
Sbjct: 321 KDAEKAKDVLCKLEHTTLRKVTANTAIYYDPDPQQT 356

[15][TOP]
>UniRef100_A9QMH3 DNA-directed RNA polymerase (Fragment) n=1 Tax=Rhabditis sp. PS1130
           RepID=A9QMH3_9BILA
          Length = 619

 Score =  207 bits (527), Expect = 4e-52
 Identities = 104/157 (66%), Positives = 128/157 (81%)
 Frame = +2

Query: 65  ELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMV 244
           ++S+ AQ NATLL  + VR++L SK + S+++L  +AF WLL E+E RF+QA+A  GEMV
Sbjct: 229 KISKQAQYNATLLMNILVRSTLCSKKMASKYKLNSEAFEWLLGEVETRFKQAIAQPGEMV 288

Query: 245 GATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDA 424
           GA AAQS+GEPATQMTLNTFH+AGVSAKNVTLGVPRL+EIINVSK  KTPSL V+L+G A
Sbjct: 289 GALAAQSLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSKTLKTPSLTVFLQGAA 348

Query: 425 VHDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENT 535
             DAERAK V  +L+HTTLR VT  T +YYDPD++NT
Sbjct: 349 AKDAERAKDVLCKLEHTTLRKVTSNTAIYYDPDVKNT 385

[16][TOP]
>UniRef100_A9QMR5 DNA-directed RNA polymerase (Fragment) n=1 Tax=Rhabditoides
           inermiformis RepID=A9QMR5_9BILA
          Length = 524

 Score =  207 bits (526), Expect = 5e-52
 Identities = 105/156 (67%), Positives = 125/156 (80%)
 Frame = +2

Query: 68  LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
           +S+ AQ NATLL  + VR++L SK +  ++RL  +AF WLL E+E RFQQA+A  GEMVG
Sbjct: 228 ISKQAQYNATLLMNILVRSTLCSKQMADKYRLNAQAFEWLLGEVETRFQQAIAQPGEMVG 287

Query: 248 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
           A AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK  KTPSL V+L+G A 
Sbjct: 288 ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKSPKTPSLTVFLQGAAA 347

Query: 428 HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENT 535
            DAE+AK V  +L+HTTLR VT  T +YYDPD +NT
Sbjct: 348 RDAEKAKDVLCKLEHTTLRKVTANTAIYYDPDPKNT 383

[17][TOP]
>UniRef100_A9QMF4 RNA polymerase 2 (Fragment) n=1 Tax=Rhabditoides inermiformis
           RepID=A9QMF4_9BILA
          Length = 597

 Score =  207 bits (526), Expect = 5e-52
 Identities = 105/156 (67%), Positives = 125/156 (80%)
 Frame = +2

Query: 68  LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
           +S+ AQ NATLL  + VR++L SK +  ++RL  +AF WLL E+E RFQQA+A  GEMVG
Sbjct: 196 ISKQAQYNATLLMNILVRSTLCSKQMADKYRLNAQAFEWLLGEVETRFQQAIAQPGEMVG 255

Query: 248 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
           A AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK  KTPSL V+L+G A 
Sbjct: 256 ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKSPKTPSLTVFLQGAAA 315

Query: 428 HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENT 535
            DAE+AK V  +L+HTTLR VT  T +YYDPD +NT
Sbjct: 316 RDAEKAKDVLCKLEHTTLRKVTANTAIYYDPDPKNT 351

[18][TOP]
>UniRef100_A9QMP3 DNA-directed RNA polymerase (Fragment) n=1 Tax=Rhabditis brassicae
           RepID=A9QMP3_9BILA
          Length = 406

 Score =  206 bits (525), Expect = 7e-52
 Identities = 104/156 (66%), Positives = 126/156 (80%)
 Frame = +2

Query: 68  LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
           +S+ AQ NATLL  + VR++L SK + S+++L  +AF WLL E+E RF+QA+A  GEMVG
Sbjct: 238 ISKQAQYNATLLMNILVRSTLCSKKMASKYKLNSEAFEWLLGEVETRFKQAIAQPGEMVG 297

Query: 248 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
           A AAQS+GEPATQMTLNTFH+AGVSAKNVTLGVPRL+EIINVSK  KTPSL V+L+G A 
Sbjct: 298 ALAAQSLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSKTLKTPSLTVFLQGAAA 357

Query: 428 HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENT 535
            DAERAK V  +L+HTTLR VT  T +YYDPD+ NT
Sbjct: 358 KDAERAKDVLCKLEHTTLRKVTSNTAIYYDPDVRNT 393

[19][TOP]
>UniRef100_A9QMG0 DNA-directed RNA polymerase (Fragment) n=1 Tax=Oscheius tipulae
           RepID=A9QMG0_OSCTI
          Length = 629

 Score =  206 bits (525), Expect = 7e-52
 Identities = 103/156 (66%), Positives = 125/156 (80%)
 Frame = +2

Query: 68  LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
           +S  AQ NATLL  + +R++L SK + + H+L ++AF WLL EIE RF+ A+A  GEMVG
Sbjct: 238 ISRQAQFNATLLMNILLRSTLCSKKMATTHKLNQEAFDWLLGEIETRFKSAIAQPGEMVG 297

Query: 248 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
           A AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ KTPSL V+L+G A 
Sbjct: 298 ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKQLKTPSLTVFLQGSAA 357

Query: 428 HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENT 535
            DAE+AK V  +L+HTTLR VT  T +YYDPD+ NT
Sbjct: 358 KDAEKAKDVLCKLEHTTLRKVTANTAIYYDPDVRNT 393

[20][TOP]
>UniRef100_A9QME4 RNA polymerase 2 (Fragment) n=1 Tax=Oscheius tipulae
           RepID=A9QME4_OSCTI
          Length = 446

 Score =  206 bits (525), Expect = 7e-52
 Identities = 103/156 (66%), Positives = 125/156 (80%)
 Frame = +2

Query: 68  LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
           +S  AQ NATLL  + +R++L SK + + H+L ++AF WLL EIE RF+ A+A  GEMVG
Sbjct: 60  ISRQAQFNATLLMNILLRSTLCSKKMATTHKLNQEAFDWLLGEIETRFKSAIAQPGEMVG 119

Query: 248 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
           A AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ KTPSL V+L+G A 
Sbjct: 120 ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKQLKTPSLTVFLQGSAA 179

Query: 428 HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENT 535
            DAE+AK V  +L+HTTLR VT  T +YYDPD+ NT
Sbjct: 180 KDAEKAKDVLCKLEHTTLRKVTANTAIYYDPDVRNT 215

[21][TOP]
>UniRef100_A9QME1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Rhabditis brassicae
           RepID=A9QME1_9BILA
          Length = 628

 Score =  206 bits (525), Expect = 7e-52
 Identities = 104/156 (66%), Positives = 126/156 (80%)
 Frame = +2

Query: 68  LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
           +S+ AQ NATLL  + VR++L SK + S+++L  +AF WLL E+E RF+QA+A  GEMVG
Sbjct: 231 ISKQAQYNATLLMNILVRSTLCSKKMASKYKLNSEAFEWLLGEVETRFKQAIAQPGEMVG 290

Query: 248 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
           A AAQS+GEPATQMTLNTFH+AGVSAKNVTLGVPRL+EIINVSK  KTPSL V+L+G A 
Sbjct: 291 ALAAQSLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSKTLKTPSLTVFLQGAAA 350

Query: 428 HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENT 535
            DAERAK V  +L+HTTLR VT  T +YYDPD+ NT
Sbjct: 351 KDAERAKDVLCKLEHTTLRKVTSNTAIYYDPDVRNT 386

[22][TOP]
>UniRef100_Q6JU33 RNA polymerase II largest subunit (Fragment) n=1 Tax=Limnadia
           lenticularis RepID=Q6JU33_9CRUS
          Length = 256

 Score =  206 bits (524), Expect = 9e-52
 Identities = 105/158 (66%), Positives = 125/158 (79%)
 Frame = +2

Query: 65  ELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMV 244
           +LS+ A  NATLLFQ  VRA+L +K V  E+RL+ +AF WL+ EIE RF QA AP GEMV
Sbjct: 36  KLSKQANENATLLFQTLVRATLCTKRVAEEYRLSSEAFEWLIGEIETRFLQAQAPPGEMV 95

Query: 245 GATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDA 424
           GA AAQS+GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN+SK+ K PSL V+L G A
Sbjct: 96  GALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGAA 155

Query: 425 VHDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENTI 538
             DAE+AK V   L+HTTLR VT  T +YYDPD +NT+
Sbjct: 156 ARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQNTV 193

[23][TOP]
>UniRef100_A9QMQ7 DNA-directed RNA polymerase (Fragment) n=1 Tax=Phasmarhabditis sp.
           EM434 RepID=A9QMQ7_9BILA
          Length = 398

 Score =  206 bits (524), Expect = 9e-52
 Identities = 103/156 (66%), Positives = 126/156 (80%)
 Frame = +2

Query: 68  LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
           +S+ AQ NATLL  + +R++L SK + + HRL  +AF WLL E+E RF+QA+A  GEMVG
Sbjct: 238 ISKQAQYNATLLMNILIRSTLCSKKMATSHRLNSEAFEWLLGEVETRFKQAIAQPGEMVG 297

Query: 248 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
           A AAQS+GEPATQMTLNTFH+AGVSAKNVTLGVPRL+EIINVSK+ KTPSL V+L+G A 
Sbjct: 298 ALAAQSLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSKQLKTPSLTVFLQGAAA 357

Query: 428 HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENT 535
            DAE+AK V  +L+HTTLR VT  T +YYDPD +NT
Sbjct: 358 KDAEKAKDVLCKLEHTTLRKVTANTAIYYDPDPKNT 393

[24][TOP]
>UniRef100_A9QMH1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Acrobeles maximus
           RepID=A9QMH1_9BILA
          Length = 616

 Score =  206 bits (524), Expect = 9e-52
 Identities = 105/156 (67%), Positives = 123/156 (78%)
 Frame = +2

Query: 68  LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
           +S+ AQ NATLL  + +R++L SK V   H+L  +AF W+L EIE RF QA+A  GEMVG
Sbjct: 238 ISKQAQYNATLLMNILLRSTLCSKQVAKVHKLNTEAFEWILGEIETRFNQAIAQPGEMVG 297

Query: 248 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
           A AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSKR KTPSL V+L+G A 
Sbjct: 298 ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKRPKTPSLTVFLQGQAA 357

Query: 428 HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENT 535
            DAERAK V  +L+H TLR VT  T +YYDPD +NT
Sbjct: 358 KDAERAKDVLCKLEHCTLRKVTANTAIYYDPDPKNT 393

[25][TOP]
>UniRef100_A9QMG9 DNA-directed RNA polymerase (Fragment) n=1 Tax=Poikilolaimus
           regenfussi RepID=A9QMG9_9BILA
          Length = 620

 Score =  206 bits (524), Expect = 9e-52
 Identities = 104/156 (66%), Positives = 124/156 (79%)
 Frame = +2

Query: 68  LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
           +S+ AQ NATLL  + +R++L SK V  +HRL ++AF WL+ EIE RF QA+A  GEMVG
Sbjct: 230 ISKQAQFNATLLMNILLRSTLCSKQVAEKHRLNQEAFEWLIGEIETRFXQAIAQPGEMVG 289

Query: 248 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
           A AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ KTPSL V+L+G A 
Sbjct: 290 ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKQPKTPSLTVFLQGAAA 349

Query: 428 HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENT 535
            DAE+AK V  +L+HTTLR VT  T +YYDPD   T
Sbjct: 350 RDAEKAKDVLCKLEHTTLRKVTANTAIYYDPDAART 385

[26][TOP]
>UniRef100_A9QMG7 RNA polymerase 2 (Fragment) n=1 Tax=Distolabrellus veechi
           RepID=A9QMG7_9BILA
          Length = 583

 Score =  206 bits (524), Expect = 9e-52
 Identities = 105/156 (67%), Positives = 124/156 (79%)
 Frame = +2

Query: 68  LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
           +S+ AQ NATLL  + VR++L SK +  ++RL  +AF WLL EIE+RFQQA+   GEMVG
Sbjct: 221 ISKHAQYNATLLMNILVRSTLCSKQMADKYRLNEEAFEWLLGEIEHRFQQAIVQPGEMVG 280

Query: 248 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
           A AAQS+GEPATQMTLNTFH+AGVSAKNVTLGVPRL+EIINVSK  KTPSL VYL G A 
Sbjct: 281 ALAAQSLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSKSPKTPSLTVYLTGGAA 340

Query: 428 HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENT 535
            DAE+AK V  +L+HTTLR VT  T +YYDPD +NT
Sbjct: 341 KDAEKAKDVLCKLEHTTLRKVTANTAIYYDPDAKNT 376

[27][TOP]
>UniRef100_Q23699 DNA-directed RNA polymerase (Fragment) n=1 Tax=Crassostrea gigas
            RepID=Q23699_CRAGI
          Length = 1340

 Score =  206 bits (523), Expect = 1e-51
 Identities = 105/157 (66%), Positives = 124/157 (78%)
 Frame = +2

Query: 68   LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
            LS  A  NATLLF+  +R++L +K V  E RL+ +AF WL+ E+E+RFQQA A  GEMVG
Sbjct: 940  LSIQANANATLLFKCLIRSTLCAKRVTEEFRLSSEAFEWLIGEVESRFQQAQAHPGEMVG 999

Query: 248  ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
            A AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIIN+SK+ KTPSL VYL G A 
Sbjct: 1000 ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINISKKPKTPSLTVYLIGQAA 1059

Query: 428  HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENTI 538
             DAE+AK V   L+HTTLR VT  T +YYDPD +NT+
Sbjct: 1060 RDAEKAKDVLCRLEHTTLRKVTANTAIYYDPDPQNTV 1096

[28][TOP]
>UniRef100_P90678 DNA-directed RNA polymerase (Fragment) n=1 Tax=Aduncospiculum
           halicti RepID=P90678_9BILA
          Length = 631

 Score =  206 bits (523), Expect = 1e-51
 Identities = 104/156 (66%), Positives = 124/156 (79%)
 Frame = +2

Query: 68  LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
           +S  AQ NATLL  + VR++L +K +  +H+L  +AF WLL EIE RFQQA+A  GEMVG
Sbjct: 234 ISVQAQYNATLLMNILVRSTLCAKAMAEKHKLNAEAFEWLLGEIETRFQQAIAQPGEMVG 293

Query: 248 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
           A AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ KTPSL V+L G A 
Sbjct: 294 ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKKPKTPSLTVFLEGAAA 353

Query: 428 HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENT 535
            DAE+AK V  +L+HTTLR VT  T +YYDPD ++T
Sbjct: 354 KDAEKAKDVLCKLEHTTLRKVTANTAIYYDPDPQST 389

[29][TOP]
>UniRef100_A9QMP5 DNA-directed RNA polymerase (Fragment) n=1 Tax=Oscheius insectivora
           RepID=A9QMP5_9BILA
          Length = 474

 Score =  206 bits (523), Expect = 1e-51
 Identities = 102/156 (65%), Positives = 128/156 (82%)
 Frame = +2

Query: 68  LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
           +S+ AQ NATLL  + +R++L SK + + ++L ++AF WLL E+E RF+QA+A  GEMVG
Sbjct: 227 ISKQAQYNATLLMNILLRSTLCSKKMATTYKLNQEAFEWLLGEVETRFKQAIAQPGEMVG 286

Query: 248 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
           A AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ KTPSL V+L+G A 
Sbjct: 287 ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKQLKTPSLTVFLQGAAA 346

Query: 428 HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENT 535
            DAE+AK V  +L+HTTLR VT  T +YYDPD++NT
Sbjct: 347 KDAEKAKDVLCKLEHTTLRKVTANTAIYYDPDIKNT 382

[30][TOP]
>UniRef100_Q25203 DNA-directed RNA polymerase (Fragment) n=1 Tax=Ilyanassa obsoleta
            RepID=Q25203_9CAEN
          Length = 1343

 Score =  205 bits (522), Expect = 1e-51
 Identities = 105/157 (66%), Positives = 121/157 (77%)
 Frame = +2

Query: 68   LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
            +S+ A  NATLL +  +R++L +K V  EHRL+  AF WLL EIE RFQQA A  GEMVG
Sbjct: 943  ISKQANENATLLMKCLIRSTLCAKRVAEEHRLSEDAFNWLLGEIETRFQQAQAHPGEMVG 1002

Query: 248  ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
            A AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIIN+SK+ KTPSL VYL G A 
Sbjct: 1003 ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINISKKPKTPSLTVYLNGPAA 1062

Query: 428  HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENTI 538
             DAE+ K V   L+HTTLR VT  T +YYDPD  NT+
Sbjct: 1063 RDAEKCKDVLCRLEHTTLRKVTANTAIYYDPDPMNTV 1099

[31][TOP]
>UniRef100_A9QMG4 RNA polymerase 2 (Fragment) n=1 Tax=Pelodera strongyloides
           dermatitica RepID=A9QMG4_9PELO
          Length = 478

 Score =  205 bits (522), Expect = 1e-51
 Identities = 103/156 (66%), Positives = 124/156 (79%)
 Frame = +2

Query: 68  LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
           +S+ AQ NATLL  + +R++L SK +  +HRL  + F WLL EIE+RF QA+A  GEMVG
Sbjct: 220 ISKQAQYNATLLMNILIRSTLCSKQMAEKHRLNEEGFEWLLGEIEHRFNQAIAQPGEMVG 279

Query: 248 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
           A AAQS+GEPATQMTLNTFH+AGVSAKNVTLGVPRL+EIINVSK  KTPSL V+L+G A 
Sbjct: 280 ALAAQSLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSKSPKTPSLTVFLQGGAA 339

Query: 428 HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENT 535
            DAE+AK V  +L+HTTLR VT  T +YYDPD +NT
Sbjct: 340 KDAEKAKDVLCKLEHTTLRKVTSNTAIYYDPDPKNT 375

[32][TOP]
>UniRef100_A9QMG1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Oscheius
           dolichuroides RepID=A9QMG1_9BILA
          Length = 629

 Score =  205 bits (522), Expect = 1e-51
 Identities = 102/156 (65%), Positives = 127/156 (81%)
 Frame = +2

Query: 68  LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
           +S+ AQ NATLL  + +R++L +K + + H+L ++AF WLL EIE RF+ A+A  GEMVG
Sbjct: 241 ISKQAQYNATLLMNILLRSTLCAKKMATTHKLNQEAFEWLLGEIETRFKAAIAQPGEMVG 300

Query: 248 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
           A AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ KTPSL V+L+G A 
Sbjct: 301 ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKQLKTPSLTVFLQGAAA 360

Query: 428 HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENT 535
            DAE+AK V  +L+HTTLR VT  T +YYDPD++NT
Sbjct: 361 KDAEKAKDVLCKLEHTTLRKVTSNTAIYYDPDMKNT 396

[33][TOP]
>UniRef100_A9QMF0 DNA-directed RNA polymerase (Fragment) n=1 Tax=Pelodera
           strongyloides dermatitica RepID=A9QMF0_9PELO
          Length = 633

 Score =  205 bits (522), Expect = 1e-51
 Identities = 103/156 (66%), Positives = 124/156 (79%)
 Frame = +2

Query: 68  LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
           +S+ AQ NATLL  + +R++L SK +  +HRL  + F WLL EIE+RF QA+A  GEMVG
Sbjct: 239 ISKQAQYNATLLMNILIRSTLCSKQMAEKHRLNEEGFEWLLGEIEHRFNQAIAQPGEMVG 298

Query: 248 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
           A AAQS+GEPATQMTLNTFH+AGVSAKNVTLGVPRL+EIINVSK  KTPSL V+L+G A 
Sbjct: 299 ALAAQSLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSKSPKTPSLTVFLQGGAA 358

Query: 428 HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENT 535
            DAE+AK V  +L+HTTLR VT  T +YYDPD +NT
Sbjct: 359 KDAEKAKDVLCKLEHTTLRKVTSNTAIYYDPDPKNT 394

[34][TOP]
>UniRef100_Q6E227 RNA polymerase 2 (Fragment) n=1 Tax=Caenorhabditis japonica
           RepID=Q6E227_CAEJA
          Length = 608

 Score =  205 bits (521), Expect = 2e-51
 Identities = 104/158 (65%), Positives = 126/158 (79%)
 Frame = +2

Query: 65  ELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMV 244
           E+S+ AQ NATLL  + +R++L +K + +  +L  +AF WLL EIE RFQQA+A  GEMV
Sbjct: 220 EISKQAQYNATLLMNILLRSTLCTKKMCTTAKLNTEAFDWLLGEIETRFQQAIAQPGEMV 279

Query: 245 GATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDA 424
           GA AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ KTPSL VYL G A
Sbjct: 280 GALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKQLKTPSLTVYLTGAA 339

Query: 425 VHDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENTI 538
             DAE+AK V  +L+HTTL+ VT  T +YYDPD +NT+
Sbjct: 340 ARDAEKAKDVLCKLEHTTLKKVTCNTAIYYDPDPKNTV 377

[35][TOP]
>UniRef100_A9QMG8 RNA polymerase 2 (Fragment) n=1 Tax=rhabditoid sp. PDL15
           RepID=A9QMG8_9BILA
          Length = 587

 Score =  205 bits (521), Expect = 2e-51
 Identities = 105/156 (67%), Positives = 125/156 (80%)
 Frame = +2

Query: 68  LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
           +S+ AQ NATLL  + +R++L SK V  ++RL  +AF WLL EIE RFQQA+A  GEMVG
Sbjct: 222 ISKQAQYNATLLMNILLRSTLCSKQVAEKYRLNSEAFEWLLGEIETRFQQAIAQPGEMVG 281

Query: 248 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
           A AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ KTPSL V+L+G A 
Sbjct: 282 ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKQPKTPSLTVFLQGAAA 341

Query: 428 HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENT 535
            DAE+AK V  +L+HTTLR VT  T +YYDPD + T
Sbjct: 342 RDAEKAKDVLCKLEHTTLRKVTANTAIYYDPDPKMT 377

[36][TOP]
>UniRef100_A9QMG6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Teratorhabditis
           palmarum RepID=A9QMG6_9BILA
          Length = 633

 Score =  205 bits (521), Expect = 2e-51
 Identities = 104/157 (66%), Positives = 123/157 (78%)
 Frame = +2

Query: 68  LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
           +S+ AQ NATLL  + +R++L SK V S H+L  +AF WLL EIE+RF+QA+A      G
Sbjct: 238 ISKQAQYNATLLMNILIRSTLCSKRVASMHKLNNEAFDWLLGEIEHRFKQAIAXXXXXXG 297

Query: 248 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
           A AAQS+GEPATQMTLNTFH+AGVSAKNVTLGVPRL+EIINVSK+ KTPSL +YL G A 
Sbjct: 298 ALAAQSLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSKKPKTPSLTIYLTGAAA 357

Query: 428 HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENTI 538
            DAERAK+VQ  L+HTTLR VT  T +YYDPD  NTI
Sbjct: 358 RDAERAKEVQCRLEHTTLRKVTSNTAIYYDPDPRNTI 394

[37][TOP]
>UniRef100_UPI0001796DD3 PREDICTED: similar to DNA-directed RNA polymerase II subunit RPB1
            (RNA polymerase II subunit B1) (DNA-directed RNA
            polymerase II subunit A) (DNA-directed RNA polymerase III
            largest subunit) n=1 Tax=Equus caballus
            RepID=UPI0001796DD3
          Length = 1834

 Score =  204 bits (520), Expect = 2e-51
 Identities = 101/157 (64%), Positives = 126/157 (80%)
 Frame = +2

Query: 68   LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
            LS  AQ NATLLF +H+R++L S+ +  E RL+ +AF WLL EIE++F QA+A  GEMVG
Sbjct: 1029 LSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVG 1088

Query: 248  ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
            A AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN+SK+ KTPSL V+L G + 
Sbjct: 1089 ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSA 1148

Query: 428  HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENTI 538
             DAERAK +   L+HTTLR VT  T +YYDP+ ++T+
Sbjct: 1149 RDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTV 1185

[38][TOP]
>UniRef100_UPI000179348F PREDICTED: similar to DNA-directed RNA polymerase II subunit RPB1
            (RNA polymerase II subunit B1) (DNA-directed RNA
            polymerase III largest subunit) n=1 Tax=Acyrthosiphon
            pisum RepID=UPI000179348F
          Length = 1862

 Score =  204 bits (520), Expect = 2e-51
 Identities = 104/158 (65%), Positives = 125/158 (79%)
 Frame = +2

Query: 65   ELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMV 244
            ELS+ A  NATLLFQ  VR++L +K+V    RL+ +AF WL+ EIENRF+QA A  GEMV
Sbjct: 1021 ELSKKANKNATLLFQCLVRSTLCTKLVSENFRLSSEAFEWLVGEIENRFKQAQAQPGEMV 1080

Query: 245  GATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDA 424
            GA AAQS+GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN+SK+ K PSL V+L G A
Sbjct: 1081 GALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGAA 1140

Query: 425  VHDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENTI 538
              DAE+AK V   L+HTTLR VT  T +YYDPD +NT+
Sbjct: 1141 ARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQNTV 1178

[39][TOP]
>UniRef100_UPI000179338A PREDICTED: similar to DNA-directed RNA polymerase II subunit RPB1
            (RNA polymerase II subunit B1) (DNA-directed RNA
            polymerase III largest subunit) n=1 Tax=Acyrthosiphon
            pisum RepID=UPI000179338A
          Length = 1862

 Score =  204 bits (520), Expect = 2e-51
 Identities = 104/158 (65%), Positives = 125/158 (79%)
 Frame = +2

Query: 65   ELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMV 244
            ELS+ A  NATLLFQ  VR++L +K+V    RL+ +AF WL+ EIENRF+QA A  GEMV
Sbjct: 1021 ELSKKANHNATLLFQCLVRSTLCTKLVSERFRLSSEAFEWLIGEIENRFKQAQAQPGEMV 1080

Query: 245  GATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDA 424
            GA AAQS+GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN+SK+ K PSL V+L G A
Sbjct: 1081 GALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGAA 1140

Query: 425  VHDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENTI 538
              DAE+AK V   L+HTTLR VT  T +YYDPD +NT+
Sbjct: 1141 ARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQNTV 1178

[40][TOP]
>UniRef100_UPI0000F2BF13 PREDICTED: similar to RNA polymerase II isoform 2 n=1 Tax=Monodelphis
            domestica RepID=UPI0000F2BF13
          Length = 1932

 Score =  204 bits (520), Expect = 2e-51
 Identities = 101/157 (64%), Positives = 126/157 (80%)
 Frame = +2

Query: 68   LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
            LS  AQ NATLLF +H+R++L S+ +  E RL+ +AF WLL EIE++F QA+A  GEMVG
Sbjct: 1029 LSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVG 1088

Query: 248  ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
            A AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN+SK+ KTPSL V+L G + 
Sbjct: 1089 ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSA 1148

Query: 428  HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENTI 538
             DAERAK +   L+HTTLR VT  T +YYDP+ ++T+
Sbjct: 1149 RDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTV 1185

[41][TOP]
>UniRef100_UPI0000F2BF12 PREDICTED: similar to RNA polymerase II isoform 1 n=1 Tax=Monodelphis
            domestica RepID=UPI0000F2BF12
          Length = 1970

 Score =  204 bits (520), Expect = 2e-51
 Identities = 101/157 (64%), Positives = 126/157 (80%)
 Frame = +2

Query: 68   LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
            LS  AQ NATLLF +H+R++L S+ +  E RL+ +AF WLL EIE++F QA+A  GEMVG
Sbjct: 1029 LSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVG 1088

Query: 248  ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
            A AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN+SK+ KTPSL V+L G + 
Sbjct: 1089 ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSA 1148

Query: 428  HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENTI 538
             DAERAK +   L+HTTLR VT  T +YYDP+ ++T+
Sbjct: 1149 RDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTV 1185

[42][TOP]
>UniRef100_UPI0000EBDCD2 PREDICTED: polymerase (RNA) II (DNA directed) polypeptide A, 220kDa
            isoform 4 n=1 Tax=Bos taurus RepID=UPI0000EBDCD2
          Length = 1970

 Score =  204 bits (520), Expect = 2e-51
 Identities = 101/157 (64%), Positives = 126/157 (80%)
 Frame = +2

Query: 68   LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
            LS  AQ NATLLF +H+R++L S+ +  E RL+ +AF WLL EIE++F QA+A  GEMVG
Sbjct: 1029 LSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVG 1088

Query: 248  ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
            A AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN+SK+ KTPSL V+L G + 
Sbjct: 1089 ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSA 1148

Query: 428  HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENTI 538
             DAERAK +   L+HTTLR VT  T +YYDP+ ++T+
Sbjct: 1149 RDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTV 1185

[43][TOP]
>UniRef100_UPI0000E24648 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
            (RPB1) n=1 Tax=Pan troglodytes RepID=UPI0000E24648
          Length = 1913

 Score =  204 bits (520), Expect = 2e-51
 Identities = 101/157 (64%), Positives = 126/157 (80%)
 Frame = +2

Query: 68   LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
            LS  AQ NATLLF +H+R++L S+ +  E RL+ +AF WLL EIE++F QA+A  GEMVG
Sbjct: 1029 LSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVG 1088

Query: 248  ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
            A AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN+SK+ KTPSL V+L G + 
Sbjct: 1089 ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSA 1148

Query: 428  HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENTI 538
             DAERAK +   L+HTTLR VT  T +YYDP+ ++T+
Sbjct: 1149 RDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTV 1185

[44][TOP]
>UniRef100_UPI00005A0B2C PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
            (RPB1) isoform 23 n=1 Tax=Canis lupus familiaris
            RepID=UPI00005A0B2C
          Length = 1888

 Score =  204 bits (520), Expect = 2e-51
 Identities = 101/157 (64%), Positives = 126/157 (80%)
 Frame = +2

Query: 68   LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
            LS  AQ NATLLF +H+R++L S+ +  E RL+ +AF WLL EIE++F QA+A  GEMVG
Sbjct: 1029 LSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVG 1088

Query: 248  ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
            A AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN+SK+ KTPSL V+L G + 
Sbjct: 1089 ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSA 1148

Query: 428  HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENTI 538
             DAERAK +   L+HTTLR VT  T +YYDP+ ++T+
Sbjct: 1149 RDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTV 1185

[45][TOP]
>UniRef100_UPI00005A0B2B PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
            (RPB1) isoform 22 n=1 Tax=Canis lupus familiaris
            RepID=UPI00005A0B2B
          Length = 1892

 Score =  204 bits (520), Expect = 2e-51
 Identities = 101/157 (64%), Positives = 126/157 (80%)
 Frame = +2

Query: 68   LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
            LS  AQ NATLLF +H+R++L S+ +  E RL+ +AF WLL EIE++F QA+A  GEMVG
Sbjct: 1031 LSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVG 1090

Query: 248  ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
            A AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN+SK+ KTPSL V+L G + 
Sbjct: 1091 ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSA 1150

Query: 428  HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENTI 538
             DAERAK +   L+HTTLR VT  T +YYDP+ ++T+
Sbjct: 1151 RDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTV 1187

[46][TOP]
>UniRef100_UPI00005A0B2A PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
            (RPB1) isoform 21 n=1 Tax=Canis lupus familiaris
            RepID=UPI00005A0B2A
          Length = 1896

 Score =  204 bits (520), Expect = 2e-51
 Identities = 101/157 (64%), Positives = 126/157 (80%)
 Frame = +2

Query: 68   LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
            LS  AQ NATLLF +H+R++L S+ +  E RL+ +AF WLL EIE++F QA+A  GEMVG
Sbjct: 1031 LSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVG 1090

Query: 248  ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
            A AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN+SK+ KTPSL V+L G + 
Sbjct: 1091 ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSA 1150

Query: 428  HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENTI 538
             DAERAK +   L+HTTLR VT  T +YYDP+ ++T+
Sbjct: 1151 RDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTV 1187

[47][TOP]
>UniRef100_UPI00005A0B29 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
            (RPB1) isoform 20 n=1 Tax=Canis lupus familiaris
            RepID=UPI00005A0B29
          Length = 1891

 Score =  204 bits (520), Expect = 2e-51
 Identities = 101/157 (64%), Positives = 126/157 (80%)
 Frame = +2

Query: 68   LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
            LS  AQ NATLLF +H+R++L S+ +  E RL+ +AF WLL EIE++F QA+A  GEMVG
Sbjct: 998  LSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVG 1057

Query: 248  ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
            A AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN+SK+ KTPSL V+L G + 
Sbjct: 1058 ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSA 1117

Query: 428  HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENTI 538
             DAERAK +   L+HTTLR VT  T +YYDP+ ++T+
Sbjct: 1118 RDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTV 1154

[48][TOP]
>UniRef100_UPI00005A0B28 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
            (RPB1) isoform 19 n=1 Tax=Canis lupus familiaris
            RepID=UPI00005A0B28
          Length = 1908

 Score =  204 bits (520), Expect = 2e-51
 Identities = 101/157 (64%), Positives = 126/157 (80%)
 Frame = +2

Query: 68   LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
            LS  AQ NATLLF +H+R++L S+ +  E RL+ +AF WLL EIE++F QA+A  GEMVG
Sbjct: 1015 LSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVG 1074

Query: 248  ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
            A AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN+SK+ KTPSL V+L G + 
Sbjct: 1075 ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSA 1134

Query: 428  HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENTI 538
             DAERAK +   L+HTTLR VT  T +YYDP+ ++T+
Sbjct: 1135 RDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTV 1171

[49][TOP]
>UniRef100_UPI00005A0B27 PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide
            A isoform 18 n=1 Tax=Canis lupus familiaris
            RepID=UPI00005A0B27
          Length = 1831

 Score =  204 bits (520), Expect = 2e-51
 Identities = 101/157 (64%), Positives = 126/157 (80%)
 Frame = +2

Query: 68   LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
            LS  AQ NATLLF +H+R++L S+ +  E RL+ +AF WLL EIE++F QA+A  GEMVG
Sbjct: 1029 LSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVG 1088

Query: 248  ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
            A AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN+SK+ KTPSL V+L G + 
Sbjct: 1089 ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSA 1148

Query: 428  HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENTI 538
             DAERAK +   L+HTTLR VT  T +YYDP+ ++T+
Sbjct: 1149 RDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTV 1185

[50][TOP]
>UniRef100_UPI00005A0B26 PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide
            A isoform 17 n=1 Tax=Canis lupus familiaris
            RepID=UPI00005A0B26
          Length = 1684

 Score =  204 bits (520), Expect = 2e-51
 Identities = 101/157 (64%), Positives = 126/157 (80%)
 Frame = +2

Query: 68   LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
            LS  AQ NATLLF +H+R++L S+ +  E RL+ +AF WLL EIE++F QA+A  GEMVG
Sbjct: 1019 LSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVG 1078

Query: 248  ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
            A AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN+SK+ KTPSL V+L G + 
Sbjct: 1079 ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSA 1138

Query: 428  HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENTI 538
             DAERAK +   L+HTTLR VT  T +YYDP+ ++T+
Sbjct: 1139 RDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTV 1175

[51][TOP]
>UniRef100_UPI00005A0B25 PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide
            A isoform 16 n=1 Tax=Canis lupus familiaris
            RepID=UPI00005A0B25
          Length = 1752

 Score =  204 bits (520), Expect = 2e-51
 Identities = 101/157 (64%), Positives = 126/157 (80%)
 Frame = +2

Query: 68   LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
            LS  AQ NATLLF +H+R++L S+ +  E RL+ +AF WLL EIE++F QA+A  GEMVG
Sbjct: 1019 LSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVG 1078

Query: 248  ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
            A AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN+SK+ KTPSL V+L G + 
Sbjct: 1079 ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSA 1138

Query: 428  HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENTI 538
             DAERAK +   L+HTTLR VT  T +YYDP+ ++T+
Sbjct: 1139 RDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTV 1175

[52][TOP]
>UniRef100_UPI00005A0B24 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
            (RPB1) isoform 15 n=1 Tax=Canis lupus familiaris
            RepID=UPI00005A0B24
          Length = 1924

 Score =  204 bits (520), Expect = 2e-51
 Identities = 101/157 (64%), Positives = 126/157 (80%)
 Frame = +2

Query: 68   LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
            LS  AQ NATLLF +H+R++L S+ +  E RL+ +AF WLL EIE++F QA+A  GEMVG
Sbjct: 1031 LSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVG 1090

Query: 248  ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
            A AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN+SK+ KTPSL V+L G + 
Sbjct: 1091 ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSA 1150

Query: 428  HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENTI 538
             DAERAK +   L+HTTLR VT  T +YYDP+ ++T+
Sbjct: 1151 RDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTV 1187

[53][TOP]
>UniRef100_UPI00005A0B23 PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide
            A isoform 14 n=1 Tax=Canis lupus familiaris
            RepID=UPI00005A0B23
          Length = 1653

 Score =  204 bits (520), Expect = 2e-51
 Identities = 101/157 (64%), Positives = 126/157 (80%)
 Frame = +2

Query: 68   LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
            LS  AQ NATLLF +H+R++L S+ +  E RL+ +AF WLL EIE++F QA+A  GEMVG
Sbjct: 1002 LSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVG 1061

Query: 248  ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
            A AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN+SK+ KTPSL V+L G + 
Sbjct: 1062 ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSA 1121

Query: 428  HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENTI 538
             DAERAK +   L+HTTLR VT  T +YYDP+ ++T+
Sbjct: 1122 RDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTV 1158

[54][TOP]
>UniRef100_UPI00005A0B22 PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide
            A isoform 13 n=1 Tax=Canis lupus familiaris
            RepID=UPI00005A0B22
          Length = 1722

 Score =  204 bits (520), Expect = 2e-51
 Identities = 101/157 (64%), Positives = 126/157 (80%)
 Frame = +2

Query: 68   LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
            LS  AQ NATLLF +H+R++L S+ +  E RL+ +AF WLL EIE++F QA+A  GEMVG
Sbjct: 1002 LSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVG 1061

Query: 248  ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
            A AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN+SK+ KTPSL V+L G + 
Sbjct: 1062 ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSA 1121

Query: 428  HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENTI 538
             DAERAK +   L+HTTLR VT  T +YYDP+ ++T+
Sbjct: 1122 RDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTV 1158

[55][TOP]
>UniRef100_UPI00005A0B21 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
            (RPB1) isoform 12 n=1 Tax=Canis lupus familiaris
            RepID=UPI00005A0B21
          Length = 1922

 Score =  204 bits (520), Expect = 2e-51
 Identities = 101/157 (64%), Positives = 126/157 (80%)
 Frame = +2

Query: 68   LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
            LS  AQ NATLLF +H+R++L S+ +  E RL+ +AF WLL EIE++F QA+A  GEMVG
Sbjct: 1029 LSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVG 1088

Query: 248  ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
            A AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN+SK+ KTPSL V+L G + 
Sbjct: 1089 ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSA 1148

Query: 428  HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENTI 538
             DAERAK +   L+HTTLR VT  T +YYDP+ ++T+
Sbjct: 1149 RDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTV 1185

[56][TOP]
>UniRef100_UPI00005A0B20 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
            (RPB1) isoform 11 n=1 Tax=Canis lupus familiaris
            RepID=UPI00005A0B20
          Length = 1923

 Score =  204 bits (520), Expect = 2e-51
 Identities = 101/157 (64%), Positives = 126/157 (80%)
 Frame = +2

Query: 68   LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
            LS  AQ NATLLF +H+R++L S+ +  E RL+ +AF WLL EIE++F QA+A  GEMVG
Sbjct: 1030 LSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVG 1089

Query: 248  ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
            A AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN+SK+ KTPSL V+L G + 
Sbjct: 1090 ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSA 1149

Query: 428  HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENTI 538
             DAERAK +   L+HTTLR VT  T +YYDP+ ++T+
Sbjct: 1150 RDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTV 1186

[57][TOP]
>UniRef100_UPI00005A0B1F PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide
            A isoform 10 n=1 Tax=Canis lupus familiaris
            RepID=UPI00005A0B1F
          Length = 1840

 Score =  204 bits (520), Expect = 2e-51
 Identities = 101/157 (64%), Positives = 126/157 (80%)
 Frame = +2

Query: 68   LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
            LS  AQ NATLLF +H+R++L S+ +  E RL+ +AF WLL EIE++F QA+A  GEMVG
Sbjct: 1025 LSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVG 1084

Query: 248  ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
            A AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN+SK+ KTPSL V+L G + 
Sbjct: 1085 ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSA 1144

Query: 428  HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENTI 538
             DAERAK +   L+HTTLR VT  T +YYDP+ ++T+
Sbjct: 1145 RDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTV 1181

[58][TOP]
>UniRef100_UPI00005A0B1E PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide
            A isoform 9 n=1 Tax=Canis lupus familiaris
            RepID=UPI00005A0B1E
          Length = 1851

 Score =  204 bits (520), Expect = 2e-51
 Identities = 101/157 (64%), Positives = 126/157 (80%)
 Frame = +2

Query: 68   LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
            LS  AQ NATLLF +H+R++L S+ +  E RL+ +AF WLL EIE++F QA+A  GEMVG
Sbjct: 1025 LSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVG 1084

Query: 248  ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
            A AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN+SK+ KTPSL V+L G + 
Sbjct: 1085 ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSA 1144

Query: 428  HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENTI 538
             DAERAK +   L+HTTLR VT  T +YYDP+ ++T+
Sbjct: 1145 RDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTV 1181

[59][TOP]
>UniRef100_UPI00005A0B1D PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
            (RPB1) isoform 1 n=2 Tax=Canis lupus familiaris
            RepID=UPI00005A0B1D
          Length = 1764

 Score =  204 bits (520), Expect = 2e-51
 Identities = 101/157 (64%), Positives = 126/157 (80%)
 Frame = +2

Query: 68   LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
            LS  AQ NATLLF +H+R++L S+ +  E RL+ +AF WLL EIE++F QA+A  GEMVG
Sbjct: 1047 LSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVG 1106

Query: 248  ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
            A AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN+SK+ KTPSL V+L G + 
Sbjct: 1107 ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSA 1166

Query: 428  HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENTI 538
             DAERAK +   L+HTTLR VT  T +YYDP+ ++T+
Sbjct: 1167 RDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTV 1203

[60][TOP]
>UniRef100_UPI00005A0B1C PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide
            A isoform 8 n=1 Tax=Canis lupus familiaris
            RepID=UPI00005A0B1C
          Length = 1719

 Score =  204 bits (520), Expect = 2e-51
 Identities = 101/157 (64%), Positives = 126/157 (80%)
 Frame = +2

Query: 68   LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
            LS  AQ NATLLF +H+R++L S+ +  E RL+ +AF WLL EIE++F QA+A  GEMVG
Sbjct: 1023 LSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVG 1082

Query: 248  ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
            A AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN+SK+ KTPSL V+L G + 
Sbjct: 1083 ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSA 1142

Query: 428  HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENTI 538
             DAERAK +   L+HTTLR VT  T +YYDP+ ++T+
Sbjct: 1143 RDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTV 1179

[61][TOP]
>UniRef100_UPI00005A0B1B PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide
            A isoform 7 n=1 Tax=Canis lupus familiaris
            RepID=UPI00005A0B1B
          Length = 1858

 Score =  204 bits (520), Expect = 2e-51
 Identities = 101/157 (64%), Positives = 126/157 (80%)
 Frame = +2

Query: 68   LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
            LS  AQ NATLLF +H+R++L S+ +  E RL+ +AF WLL EIE++F QA+A  GEMVG
Sbjct: 1023 LSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVG 1082

Query: 248  ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
            A AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN+SK+ KTPSL V+L G + 
Sbjct: 1083 ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSA 1142

Query: 428  HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENTI 538
             DAERAK +   L+HTTLR VT  T +YYDP+ ++T+
Sbjct: 1143 RDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTV 1179

[62][TOP]
>UniRef100_UPI00005A0B1A PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
            (RPB1) isoform 6 n=1 Tax=Canis lupus familiaris
            RepID=UPI00005A0B1A
          Length = 1767

 Score =  204 bits (520), Expect = 2e-51
 Identities = 101/157 (64%), Positives = 126/157 (80%)
 Frame = +2

Query: 68   LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
            LS  AQ NATLLF +H+R++L S+ +  E RL+ +AF WLL EIE++F QA+A  GEMVG
Sbjct: 1017 LSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVG 1076

Query: 248  ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
            A AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN+SK+ KTPSL V+L G + 
Sbjct: 1077 ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSA 1136

Query: 428  HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENTI 538
             DAERAK +   L+HTTLR VT  T +YYDP+ ++T+
Sbjct: 1137 RDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTV 1173

[63][TOP]
>UniRef100_UPI00005A0B19 PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide
            A isoform 5 n=1 Tax=Canis lupus familiaris
            RepID=UPI00005A0B19
          Length = 1693

 Score =  204 bits (520), Expect = 2e-51
 Identities = 101/157 (64%), Positives = 126/157 (80%)
 Frame = +2

Query: 68   LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
            LS  AQ NATLLF +H+R++L S+ +  E RL+ +AF WLL EIE++F QA+A  GEMVG
Sbjct: 1015 LSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVG 1074

Query: 248  ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
            A AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN+SK+ KTPSL V+L G + 
Sbjct: 1075 ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSA 1134

Query: 428  HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENTI 538
             DAERAK +   L+HTTLR VT  T +YYDP+ ++T+
Sbjct: 1135 RDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTV 1171

[64][TOP]
>UniRef100_UPI00005A0B17 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
            (RPB1) isoform 3 n=1 Tax=Canis lupus familiaris
            RepID=UPI00005A0B17
          Length = 1788

 Score =  204 bits (520), Expect = 2e-51
 Identities = 101/157 (64%), Positives = 126/157 (80%)
 Frame = +2

Query: 68   LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
            LS  AQ NATLLF +H+R++L S+ +  E RL+ +AF WLL EIE++F QA+A  GEMVG
Sbjct: 1029 LSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVG 1088

Query: 248  ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
            A AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN+SK+ KTPSL V+L G + 
Sbjct: 1089 ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSA 1148

Query: 428  HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENTI 538
             DAERAK +   L+HTTLR VT  T +YYDP+ ++T+
Sbjct: 1149 RDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTV 1185

[65][TOP]
>UniRef100_UPI00005A0B16 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
            (RPB1) isoform 2 n=1 Tax=Canis lupus familiaris
            RepID=UPI00005A0B16
          Length = 1922

 Score =  204 bits (520), Expect = 2e-51
 Identities = 101/157 (64%), Positives = 126/157 (80%)
 Frame = +2

Query: 68   LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
            LS  AQ NATLLF +H+R++L S+ +  E RL+ +AF WLL EIE++F QA+A  GEMVG
Sbjct: 1029 LSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVG 1088

Query: 248  ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
            A AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN+SK+ KTPSL V+L G + 
Sbjct: 1089 ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSA 1148

Query: 428  HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENTI 538
             DAERAK +   L+HTTLR VT  T +YYDP+ ++T+
Sbjct: 1149 RDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTV 1185

[66][TOP]
>UniRef100_UPI0001B7A25C UPI0001B7A25C related cluster n=1 Tax=Rattus norvegicus
            RepID=UPI0001B7A25C
          Length = 1968

 Score =  204 bits (520), Expect = 2e-51
 Identities = 101/157 (64%), Positives = 126/157 (80%)
 Frame = +2

Query: 68   LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
            LS  AQ NATLLF +H+R++L S+ +  E RL+ +AF WLL EIE++F QA+A  GEMVG
Sbjct: 1031 LSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVG 1090

Query: 248  ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
            A AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN+SK+ KTPSL V+L G + 
Sbjct: 1091 ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSA 1150

Query: 428  HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENTI 538
             DAERAK +   L+HTTLR VT  T +YYDP+ ++T+
Sbjct: 1151 RDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTV 1187

[67][TOP]
>UniRef100_UPI0001B7A25B UPI0001B7A25B related cluster n=1 Tax=Rattus norvegicus
            RepID=UPI0001B7A25B
          Length = 1932

 Score =  204 bits (520), Expect = 2e-51
 Identities = 101/157 (64%), Positives = 126/157 (80%)
 Frame = +2

Query: 68   LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
            LS  AQ NATLLF +H+R++L S+ +  E RL+ +AF WLL EIE++F QA+A  GEMVG
Sbjct: 1029 LSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVG 1088

Query: 248  ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
            A AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN+SK+ KTPSL V+L G + 
Sbjct: 1089 ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSA 1148

Query: 428  HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENTI 538
             DAERAK +   L+HTTLR VT  T +YYDP+ ++T+
Sbjct: 1149 RDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTV 1185

[68][TOP]
>UniRef100_UPI0000DA33D8 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
            (RPB1) n=1 Tax=Rattus norvegicus RepID=UPI0000DA33D8
          Length = 1970

 Score =  204 bits (520), Expect = 2e-51
 Identities = 101/157 (64%), Positives = 126/157 (80%)
 Frame = +2

Query: 68   LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
            LS  AQ NATLLF +H+R++L S+ +  E RL+ +AF WLL EIE++F QA+A  GEMVG
Sbjct: 1029 LSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVG 1088

Query: 248  ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
            A AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN+SK+ KTPSL V+L G + 
Sbjct: 1089 ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSA 1148

Query: 428  HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENTI 538
             DAERAK +   L+HTTLR VT  T +YYDP+ ++T+
Sbjct: 1149 RDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTV 1185

[69][TOP]
>UniRef100_UPI0001951285 220 kDa DNA-directed RNA polymerase polypeptide A n=1 Tax=Canis lupus
            familiaris RepID=UPI0001951285
          Length = 1969

 Score =  204 bits (520), Expect = 2e-51
 Identities = 101/157 (64%), Positives = 126/157 (80%)
 Frame = +2

Query: 68   LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
            LS  AQ NATLLF +H+R++L S+ +  E RL+ +AF WLL EIE++F QA+A  GEMVG
Sbjct: 1029 LSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVG 1088

Query: 248  ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
            A AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN+SK+ KTPSL V+L G + 
Sbjct: 1089 ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSA 1148

Query: 428  HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENTI 538
             DAERAK +   L+HTTLR VT  T +YYDP+ ++T+
Sbjct: 1149 RDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTV 1185

[70][TOP]
>UniRef100_O35559 DNA-directed RNA polymerase n=1 Tax=Cricetulus griseus
            RepID=O35559_CRIGR
          Length = 1970

 Score =  204 bits (520), Expect = 2e-51
 Identities = 101/157 (64%), Positives = 126/157 (80%)
 Frame = +2

Query: 68   LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
            LS  AQ NATLLF +H+R++L S+ +  E RL+ +AF WLL EIE++F QA+A  GEMVG
Sbjct: 1029 LSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVG 1088

Query: 248  ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
            A AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN+SK+ KTPSL V+L G + 
Sbjct: 1089 ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSA 1148

Query: 428  HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENTI 538
             DAERAK +   L+HTTLR VT  T +YYDP+ ++T+
Sbjct: 1149 RDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTV 1185

[71][TOP]
>UniRef100_O08847 DNA-directed RNA polymerase n=1 Tax=Mus musculus RepID=O08847_MOUSE
          Length = 1966

 Score =  204 bits (520), Expect = 2e-51
 Identities = 101/157 (64%), Positives = 126/157 (80%)
 Frame = +2

Query: 68   LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
            LS  AQ NATLLF +H+R++L S+ +  E RL+ +AF WLL EIE++F QA+A  GEMVG
Sbjct: 1029 LSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVG 1088

Query: 248  ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
            A AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN+SK+ KTPSL V+L G + 
Sbjct: 1089 ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSA 1148

Query: 428  HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENTI 538
             DAERAK +   L+HTTLR VT  T +YYDP+ ++T+
Sbjct: 1149 RDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTV 1185

[72][TOP]
>UniRef100_Q9NJI9 RNA polymerase II largest subunit (Fragment) n=1 Tax=Tanystylum
           orbiculare RepID=Q9NJI9_9CHEL
          Length = 256

 Score =  204 bits (520), Expect = 2e-51
 Identities = 107/157 (68%), Positives = 122/157 (77%)
 Frame = +2

Query: 68  LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
           LS  A  NATLLFQ  +R++L SK V  E RL+ +AF WLL EI+ RFQQA    GEMVG
Sbjct: 37  LSLQANENATLLFQALLRSTLCSKKVAEEFRLSTEAFDWLLGEIDTRFQQAQVMPGEMVG 96

Query: 248 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
           A AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ KTPSL V+L G A 
Sbjct: 97  ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKKPKTPSLTVFLTGAAA 156

Query: 428 HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENTI 538
            DAE+AK V   L+HTTLR VT  T +YYDPD +NT+
Sbjct: 157 RDAEKAKDVLCRLEHTTLRKVTANTAIYYDPDPQNTV 193

[73][TOP]
>UniRef100_O01364 DNA-directed RNA polymerase (Fragment) n=1 Tax=Cruznema tripartitum
           RepID=O01364_9BILA
          Length = 633

 Score =  204 bits (520), Expect = 2e-51
 Identities = 103/156 (66%), Positives = 125/156 (80%)
 Frame = +2

Query: 68  LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
           +S+ AQ NATLL  + +R++L SK + S ++L ++AF WLL E+E RFQQ +A  GEMVG
Sbjct: 234 ISKQAQYNATLLMNILLRSTLCSKQMASHYKLNQEAFDWLLGEVETRFQQPIAQPGEMVG 293

Query: 248 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
           A AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK  KTPSL V+LRG A 
Sbjct: 294 ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKMLKTPSLTVFLRGVAA 353

Query: 428 HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENT 535
            DA++AK V  +L+HTTLR VT  T +YYDPD +NT
Sbjct: 354 RDADKAKDVLCKLEHTTLRKVTANTAIYYDPDPKNT 389

[74][TOP]
>UniRef100_A9QMF2 DNA-directed RNA polymerase (Fragment) n=1 Tax=Pelodera teres
           RepID=A9QMF2_9PELO
          Length = 629

 Score =  204 bits (520), Expect = 2e-51
 Identities = 103/156 (66%), Positives = 124/156 (79%)
 Frame = +2

Query: 68  LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
           +S+ AQ NATLL  + +R++L SK +  +HRL   AF WLL EIE+RFQQA+   GEMVG
Sbjct: 234 ISKQAQYNATLLVNILIRSTLCSKQMSEKHRLNESAFDWLLGEIEHRFQQAIVQPGEMVG 293

Query: 248 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
           A AAQS+GEPATQMTLNTFH+AGVSAKNVTLGVPRL+EIINVSK  +TPSL V+L+G A 
Sbjct: 294 ALAAQSLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSKSPRTPSLTVFLQGAAA 353

Query: 428 HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENT 535
            DAE+AK V  +L+HTTLR VT  T +YYDPD +NT
Sbjct: 354 KDAEKAKDVLCKLEHTTLRKVTSNTAIYYDPDPKNT 389

[75][TOP]
>UniRef100_A8PU11 DNA-directed RNA polymerase n=1 Tax=Brugia malayi RepID=A8PU11_BRUMA
          Length = 1943

 Score =  204 bits (520), Expect = 2e-51
 Identities = 102/157 (64%), Positives = 126/157 (80%)
 Frame = +2

Query: 68   LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
            +S+ AQ NATLL  + +R++L +K +  +HRL  + F WL+ EIE+RF+QA+   GEMVG
Sbjct: 1094 ISKQAQYNATLLMNILLRSTLCAKRMAEKHRLNSEGFEWLIGEIESRFKQAIVQPGEMVG 1153

Query: 248  ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
            A AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ KTPSL V+L+G A 
Sbjct: 1154 AIAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKKPKTPSLTVFLQGTAA 1213

Query: 428  HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENTI 538
             DAE+AK V  +L+HTTLR VT  T +YYDPD +NTI
Sbjct: 1214 KDAEKAKDVLCKLEHTTLRKVTANTAIYYDPDPKNTI 1250

[76][TOP]
>UniRef100_B4E3V7 DNA-directed RNA polymerase n=1 Tax=Homo sapiens RepID=B4E3V7_HUMAN
          Length = 1935

 Score =  204 bits (520), Expect = 2e-51
 Identities = 101/157 (64%), Positives = 126/157 (80%)
 Frame = +2

Query: 68   LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
            LS  AQ NATLLF +H+R++L S+ +  E RL+ +AF WLL EIE++F QA+A  GEMVG
Sbjct: 994  LSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVG 1053

Query: 248  ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
            A AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN+SK+ KTPSL V+L G + 
Sbjct: 1054 ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSA 1113

Query: 428  HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENTI 538
             DAERAK +   L+HTTLR VT  T +YYDP+ ++T+
Sbjct: 1114 RDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTV 1150

[77][TOP]
>UniRef100_A6NN93 DNA-directed RNA polymerase n=1 Tax=Homo sapiens RepID=A6NN93_HUMAN
          Length = 1970

 Score =  204 bits (520), Expect = 2e-51
 Identities = 101/157 (64%), Positives = 126/157 (80%)
 Frame = +2

Query: 68   LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
            LS  AQ NATLLF +H+R++L S+ +  E RL+ +AF WLL EIE++F QA+A  GEMVG
Sbjct: 1029 LSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVG 1088

Query: 248  ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
            A AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN+SK+ KTPSL V+L G + 
Sbjct: 1089 ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSA 1148

Query: 428  HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENTI 538
             DAERAK +   L+HTTLR VT  T +YYDP+ ++T+
Sbjct: 1149 RDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTV 1185

[78][TOP]
>UniRef100_P08775 DNA-directed RNA polymerase II subunit RPB1 n=1 Tax=Mus musculus
            RepID=RPB1_MOUSE
          Length = 1970

 Score =  204 bits (520), Expect = 2e-51
 Identities = 101/157 (64%), Positives = 126/157 (80%)
 Frame = +2

Query: 68   LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
            LS  AQ NATLLF +H+R++L S+ +  E RL+ +AF WLL EIE++F QA+A  GEMVG
Sbjct: 1029 LSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVG 1088

Query: 248  ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
            A AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN+SK+ KTPSL V+L G + 
Sbjct: 1089 ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSA 1148

Query: 428  HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENTI 538
             DAERAK +   L+HTTLR VT  T +YYDP+ ++T+
Sbjct: 1149 RDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTV 1185

[79][TOP]
>UniRef100_P24928 DNA-directed RNA polymerase II subunit RPB1 n=2 Tax=Euarchontoglires
            RepID=RPB1_HUMAN
          Length = 1970

 Score =  204 bits (520), Expect = 2e-51
 Identities = 101/157 (64%), Positives = 126/157 (80%)
 Frame = +2

Query: 68   LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
            LS  AQ NATLLF +H+R++L S+ +  E RL+ +AF WLL EIE++F QA+A  GEMVG
Sbjct: 1029 LSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVG 1088

Query: 248  ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
            A AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN+SK+ KTPSL V+L G + 
Sbjct: 1089 ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSA 1148

Query: 428  HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENTI 538
             DAERAK +   L+HTTLR VT  T +YYDP+ ++T+
Sbjct: 1149 RDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTV 1185

[80][TOP]
>UniRef100_Q6E228 DNA-directed RNA polymerase (Fragment) n=1 Tax=Rhabditella axei
           RepID=Q6E228_9BILA
          Length = 621

 Score =  204 bits (519), Expect = 3e-51
 Identities = 102/156 (65%), Positives = 126/156 (80%)
 Frame = +2

Query: 68  LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
           +S+ AQ NATLL  + +R++L SK + S ++L  ++F WL+ EIE RF+QA+A  GEMVG
Sbjct: 238 ISQQAQYNATLLMNILIRSTLCSKKMASTYKLNAESFEWLIGEIETRFKQAIAQPGEMVG 297

Query: 248 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
           A AAQS+GEPATQMTLNTFH+AGVSAKNVTLGVPRL+EIINVSK+ KTPSL VYL G A 
Sbjct: 298 ALAAQSLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSKQLKTPSLTVYLIGAAA 357

Query: 428 HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENT 535
            DAE+AK V  +L+HTTLR VT  T +YYDPD++NT
Sbjct: 358 KDAEKAKDVLCKLEHTTLRKVTANTAIYYDPDIKNT 393

[81][TOP]
>UniRef100_A9QMS7 DNA-directed RNA polymerase (Fragment) n=1 Tax=Cuticonema vivipara
           RepID=A9QMS7_9BILA
          Length = 407

 Score =  204 bits (519), Expect = 3e-51
 Identities = 102/157 (64%), Positives = 125/157 (79%)
 Frame = +2

Query: 65  ELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMV 244
           ++S+ AQ NATLL  + +R++L SK +  +H+L  +AF WLL EIE +F QA+A  GEMV
Sbjct: 237 KISQQAQYNATLLMNILLRSTLCSKRLAEKHKLNTEAFEWLLGEIETKFNQAIAQPGEMV 296

Query: 245 GATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDA 424
           GA AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK  KTPSL V+L+G A
Sbjct: 297 GALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKNPKTPSLTVFLQGGA 356

Query: 425 VHDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENT 535
             DAE+AK V  +L+HTTLR VT  T +YYDPD+ +T
Sbjct: 357 AKDAEKAKXVLCKLEHTTLRKVTANTAIYYDPDIRST 393

[82][TOP]
>UniRef100_Q6E233 RNA polymerase 2 (Fragment) n=1 Tax=Caenorhabditis remanei
           RepID=Q6E233_CAERE
          Length = 611

 Score =  203 bits (517), Expect = 6e-51
 Identities = 102/158 (64%), Positives = 127/158 (80%)
 Frame = +2

Query: 65  ELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMV 244
           E+S+ AQ NATLL  + +R++L +K + +  +L  +AF WLL E+E+RFQQA+A  GEMV
Sbjct: 220 EISKQAQYNATLLMNILLRSTLCTKKMCTSAKLNTEAFDWLLGEVESRFQQAIAQPGEMV 279

Query: 245 GATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDA 424
           GA AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ KTPSL V+L G A
Sbjct: 280 GALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKQLKTPSLTVFLTGAA 339

Query: 425 VHDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENTI 538
             DAE+AK V  +L+HTTL+ VT  T +YYDPD +NT+
Sbjct: 340 AKDAEKAKDVLCKLEHTTLKKVTLNTAIYYDPDPKNTV 377

[83][TOP]
>UniRef100_P91819 DNA-directed RNA polymerase (Fragment) n=1 Tax=Zeldia punctata
           RepID=P91819_ZELPU
          Length = 629

 Score =  203 bits (517), Expect = 6e-51
 Identities = 104/156 (66%), Positives = 122/156 (78%)
 Frame = +2

Query: 68  LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
           +S+ AQ NATLL  + +R++L SK V   H+L  +AF W+L EIE RF QA+A  GEMVG
Sbjct: 231 ISKQAQYNATLLMNILLRSTLCSKQVAKVHKLNTEAFEWILGEIETRFNQAIAQPGEMVG 290

Query: 248 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
           A AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSKR KTPSL ++L+G A 
Sbjct: 291 ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKRPKTPSLTIFLQGQAA 350

Query: 428 HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENT 535
            DAERAK V  +L+H TLR VT  T  YYDPD +NT
Sbjct: 351 KDAERAKDVLCKLEHCTLRKVTANTADYYDPDPKNT 386

[84][TOP]
>UniRef100_O01370 DNA-directed RNA polymerase (Fragment) n=1 Tax=Mesorhabditis sp.
           RepID=O01370_9BILA
          Length = 633

 Score =  203 bits (517), Expect = 6e-51
 Identities = 103/157 (65%), Positives = 126/157 (80%)
 Frame = +2

Query: 68  LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
           +S+ AQ NATLL  + +R++L SK +  ++RL ++ F WLL EIE+RFQQA+A  GEMVG
Sbjct: 234 ISQQAQYNATLLMNILLRSTLCSKQMAEKYRLNQEGFEWLLGEIEHRFQQAIAQPGEMVG 293

Query: 248 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
           A AAQS+GEPATQMTLNTFH+AGVSAKNVTLGVPRL+EIINVSK  KTPSL V+L G A 
Sbjct: 294 ALAAQSLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSKSPKTPSLTVFLTGAAR 353

Query: 428 HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENTI 538
            DAE+AK V  +L+HTTLR VT  T +YYDPD +NT+
Sbjct: 354 KDAEKAKDVLCKLEHTTLRKVTANTAIYYDPDPKNTV 390

[85][TOP]
>UniRef100_A9QME6 RNA polymerase 2 (Fragment) n=1 Tax=Pellioditis sp. JU274
           RepID=A9QME6_9PELO
          Length = 526

 Score =  203 bits (517), Expect = 6e-51
 Identities = 103/156 (66%), Positives = 125/156 (80%)
 Frame = +2

Query: 68  LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
           +S+ AQ NATLL  + +R++L SK + S ++L  +AF WLL E+E RFQQA+A  GEMVG
Sbjct: 135 ISKQAQYNATLLMNILLRSTLCSKKMASTYKLNAEAFEWLLGEVETRFQQAIAQPGEMVG 194

Query: 248 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
           A AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ KTPSL VYL G A 
Sbjct: 195 ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKQLKTPSLTVYLTGAAT 254

Query: 428 HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENT 535
            DA+RAK V  +L+HTTLR VT  T +YYDP+ ++T
Sbjct: 255 KDADRAKDVLCKLEHTTLRKVTSNTAIYYDPNPQST 290

[86][TOP]
>UniRef100_UPI000186501C hypothetical protein BRAFLDRAFT_115025 n=1 Tax=Branchiostoma floridae
            RepID=UPI000186501C
          Length = 1956

 Score =  203 bits (516), Expect = 7e-51
 Identities = 102/157 (64%), Positives = 124/157 (78%)
 Frame = +2

Query: 68   LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
            +S  AQ NAT+LF   +R++L ++ VL E RL+ +AF WLL EIE+RF QA+   GEMVG
Sbjct: 1025 ISIQAQANATILFNTLLRSTLCTRRVLEEFRLSTEAFDWLLGEIESRFNQAIVQPGEMVG 1084

Query: 248  ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
            A AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ KTPSL V+L G   
Sbjct: 1085 ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKKPKTPSLTVFLLGQPA 1144

Query: 428  HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENTI 538
            +DAE+AK +   L+HTTLR VT  T +YYDPD +NT+
Sbjct: 1145 NDAEKAKDILCRLEHTTLRKVTANTAIYYDPDPQNTV 1181

[87][TOP]
>UniRef100_C3ZES3 DNA-directed RNA polymerase n=1 Tax=Branchiostoma floridae
            RepID=C3ZES3_BRAFL
          Length = 1934

 Score =  203 bits (516), Expect = 7e-51
 Identities = 102/157 (64%), Positives = 124/157 (78%)
 Frame = +2

Query: 68   LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
            +S  AQ NAT+LF   +R++L ++ VL E RL+ +AF WLL EIE+RF QA+   GEMVG
Sbjct: 1025 ISIQAQANATILFNTLLRSTLCTRRVLEEFRLSTEAFDWLLGEIESRFNQAIVQPGEMVG 1084

Query: 248  ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
            A AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ KTPSL V+L G   
Sbjct: 1085 ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKKPKTPSLTVFLLGQPA 1144

Query: 428  HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENTI 538
            +DAE+AK +   L+HTTLR VT  T +YYDPD +NT+
Sbjct: 1145 NDAEKAKDILCRLEHTTLRKVTANTAIYYDPDPQNTV 1181

[88][TOP]
>UniRef100_Q9BN99 RNA polymerase II largest subunit (Fragment) n=1 Tax=Stenochrus
           portoricensis RepID=Q9BN99_9ARAC
          Length = 256

 Score =  202 bits (514), Expect = 1e-50
 Identities = 106/157 (67%), Positives = 121/157 (77%)
 Frame = +2

Query: 68  LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
           LS  A  NATLLF+  +R+ L +K V  E RL+ +AF WLL EIE RFQQA    GEMVG
Sbjct: 37  LSIQANDNATLLFRALLRSVLCTKRVAEEFRLSSEAFEWLLGEIETRFQQAQVQPGEMVG 96

Query: 248 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
           A AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIIN+SKR KTPSL V+L G A 
Sbjct: 97  ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINISKRPKTPSLTVFLTGAAA 156

Query: 428 HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENTI 538
            DAE+AK V   L+HTTLR VT  T +YYDPD +NT+
Sbjct: 157 RDAEKAKDVLCRLEHTTLRKVTANTAIYYDPDPQNTV 193

[89][TOP]
>UniRef100_A9QMS1 RNA polymerase 2 (Fragment) n=1 Tax=Rhabditoides regina
           RepID=A9QMS1_9BILA
          Length = 426

 Score =  202 bits (514), Expect = 1e-50
 Identities = 102/156 (65%), Positives = 122/156 (78%)
 Frame = +2

Query: 68  LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
           +S+ AQ NATLL  + +R++L SK +  +H+L  + F WLL EIE RFQ A+A  GEMVG
Sbjct: 30  ISKQAQYNATLLMNILIRSTLCSKQMAEKHKLNEEGFEWLLGEIETRFQLAIAQPGEMVG 89

Query: 248 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
           A AAQS+GEPATQMTLNTFH+AGVSAKNVTLGVPRL+EIINVSK  KTPSL V+L G A 
Sbjct: 90  ALAAQSLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSKSPKTPSLTVFLHGAAA 149

Query: 428 HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENT 535
            DAE+AK V  +L+HTTLR VT  T +YYDPD +NT
Sbjct: 150 KDAEKAKDVLCKLEHTTLRKVTSNTAIYYDPDPKNT 185

[90][TOP]
>UniRef100_A9QMF3 DNA-directed RNA polymerase (Fragment) n=1 Tax=Rhabditoides regina
           RepID=A9QMF3_9BILA
          Length = 626

 Score =  202 bits (514), Expect = 1e-50
 Identities = 102/156 (65%), Positives = 122/156 (78%)
 Frame = +2

Query: 68  LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
           +S+ AQ NATLL  + +R++L SK +  +H+L  + F WLL EIE RFQ A+A  GEMVG
Sbjct: 234 ISKQAQYNATLLMNILIRSTLCSKQMAEKHKLNEEGFEWLLGEIETRFQLAIAQPGEMVG 293

Query: 248 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
           A AAQS+GEPATQMTLNTFH+AGVSAKNVTLGVPRL+EIINVSK  KTPSL V+L G A 
Sbjct: 294 ALAAQSLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSKSPKTPSLTVFLHGAAA 353

Query: 428 HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENT 535
            DAE+AK V  +L+HTTLR VT  T +YYDPD +NT
Sbjct: 354 KDAEKAKDVLCKLEHTTLRKVTSNTAIYYDPDPKNT 389

[91][TOP]
>UniRef100_UPI0001985649 PREDICTED: similar to NRPB1 (RNA POLYMERASE II LARGE SUBUNIT); DNA
            binding / DNA-directed RNA polymerase n=1 Tax=Vitis
            vinifera RepID=UPI0001985649
          Length = 1848

 Score =  202 bits (513), Expect = 2e-50
 Identities = 104/157 (66%), Positives = 124/157 (78%)
 Frame = +2

Query: 68   LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
            +S  AQ NATL F + +R++ ASK VL E+RLTR+AF W++ EIE+RF Q+L   GEM+G
Sbjct: 1025 ISMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFEWVIGEIESRFLQSLVAPGEMIG 1084

Query: 248  ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
              AAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINV+K+ KTPSL VYL+ D  
Sbjct: 1085 CVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLKPDVS 1144

Query: 428  HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENTI 538
               ERAK VQ  L++TTLR VT  TEV+YDPD  +TI
Sbjct: 1145 KTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTI 1181

[92][TOP]
>UniRef100_A7NVN7 DNA-directed RNA polymerase n=1 Tax=Vitis vinifera
           RepID=A7NVN7_VITVI
          Length = 1010

 Score =  202 bits (513), Expect = 2e-50
 Identities = 104/157 (66%), Positives = 124/157 (78%)
 Frame = +2

Query: 68  LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
           +S  AQ NATL F + +R++ ASK VL E+RLTR+AF W++ EIE+RF Q+L   GEM+G
Sbjct: 262 ISMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFEWVIGEIESRFLQSLVAPGEMIG 321

Query: 248 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
             AAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINV+K+ KTPSL VYL+ D  
Sbjct: 322 CVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLKPDVS 381

Query: 428 HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENTI 538
              ERAK VQ  L++TTLR VT  TEV+YDPD  +TI
Sbjct: 382 KTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTI 418

[93][TOP]
>UniRef100_Q6E231 RNA polymerase 2 (Fragment) n=1 Tax=Caenorhabditis brenneri
           RepID=Q6E231_CAEBE
          Length = 596

 Score =  202 bits (513), Expect = 2e-50
 Identities = 102/158 (64%), Positives = 125/158 (79%)
 Frame = +2

Query: 65  ELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMV 244
           E+S+ AQ NATLL  + +R++L +K + +  +L  +AF WLL EIE RFQQA+A  GEMV
Sbjct: 212 EISKQAQYNATLLMNILLRSTLCTKKMCTSAKLNTEAFDWLLGEIETRFQQAIAQPGEMV 271

Query: 245 GATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDA 424
           GA AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ KTPSL V+L G A
Sbjct: 272 GALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKQLKTPSLTVFLTGPA 331

Query: 425 VHDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENTI 538
             D E+AK V  +L+HTTL+ VT  T +YYDPD +NT+
Sbjct: 332 AKDPEKAKDVLCKLEHTTLKKVTCNTAIYYDPDPKNTV 369

[94][TOP]
>UniRef100_Q6E225 DNA-directed RNA polymerase (Fragment) n=1 Tax=Caenorhabditis sp.
           SB341 RepID=Q6E225_9PELO
          Length = 622

 Score =  202 bits (513), Expect = 2e-50
 Identities = 100/158 (63%), Positives = 127/158 (80%)
 Frame = +2

Query: 65  ELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMV 244
           ++S+ AQ NATLL  + +R++L SK + +  +L  +AF WLL E+E+RF Q++A  GEMV
Sbjct: 237 DISKQAQYNATLLMNILLRSTLCSKKMATSAKLNTEAFDWLLGEVESRFMQSIAQPGEMV 296

Query: 245 GATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDA 424
           GA AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ KTPSL V+L+G A
Sbjct: 297 GALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKQLKTPSLTVFLQGAA 356

Query: 425 VHDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENTI 538
             DAE+AK V  +L+HTTL+ VT  T +YYDPD +NT+
Sbjct: 357 AKDAEKAKDVLCKLEHTTLKKVTSNTAIYYDPDPKNTV 394

[95][TOP]
>UniRef100_UPI000051A77E PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
            isoform 2 n=1 Tax=Apis mellifera RepID=UPI000051A77E
          Length = 1422

 Score =  201 bits (512), Expect = 2e-50
 Identities = 103/157 (65%), Positives = 122/157 (77%)
 Frame = +2

Query: 68   LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
            LS+ A  NATLLFQ  VR++L +K V  E RL+ +AF WL+ EIE RFQQA    GEMVG
Sbjct: 1021 LSKQANENATLLFQCLVRSTLCTKCVSEEFRLSSEAFEWLIGEIETRFQQAQVSPGEMVG 1080

Query: 248  ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
            A AAQS+GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN+SK+ K PSL V+L G A 
Sbjct: 1081 ALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGAAA 1140

Query: 428  HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENTI 538
             DAE+AK V   L+HTTLR VT  T +YYDPD +NT+
Sbjct: 1141 RDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQNTV 1177

[96][TOP]
>UniRef100_Q6E232 RNA polymersae 2 (Fragment) n=1 Tax=Caenorhabditis sp. PS1010
           RepID=Q6E232_9PELO
          Length = 601

 Score =  201 bits (512), Expect = 2e-50
 Identities = 101/158 (63%), Positives = 126/158 (79%)
 Frame = +2

Query: 65  ELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMV 244
           ++S+ AQ NATLL  + +R++L +K + +  +L  +AF WLL EIE+RF QA+A  GEMV
Sbjct: 220 DISKQAQYNATLLMNILLRSTLCTKKMCTSSKLNTEAFDWLLGEIESRFMQAIAQPGEMV 279

Query: 245 GATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDA 424
           GA AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ KTPSL V+L G A
Sbjct: 280 GALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKQLKTPSLTVFLTGAA 339

Query: 425 VHDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENTI 538
             DAE+AK V  +L+HTTL+ VT  T +YYDPD +NT+
Sbjct: 340 AKDAEKAKDVLCKLEHTTLKKVTANTAIYYDPDPKNTV 377

[97][TOP]
>UniRef100_O01376 DNA-directed RNA polymerase (Fragment) n=1 Tax=unidentified
           nematode RepID=O01376_9BILA
          Length = 633

 Score =  201 bits (512), Expect = 2e-50
 Identities = 101/158 (63%), Positives = 126/158 (79%)
 Frame = +2

Query: 65  ELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMV 244
           ++S+ AQ NATLL  + +R++L +K + +  +L  +AF WLL EIE+RF QA+A  GEMV
Sbjct: 233 DISKQAQYNATLLMNILLRSALCTKKMCTSSKLNTEAFDWLLGEIESRFMQAIAQPGEMV 292

Query: 245 GATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDA 424
           GA AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ KTPSL V+L G A
Sbjct: 293 GALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKQLKTPSLTVFLTGAA 352

Query: 425 VHDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENTI 538
             DAE+AK V  +L+HTTL+ VT  T +YYDPD +NT+
Sbjct: 353 AKDAEKAKDVLCKLEHTTLKKVTANTAIYYDPDPKNTV 390

[98][TOP]
>UniRef100_A9UEE0 RNA polymerase 2 largest subunit (Fragment) n=1 Tax=Diploscapter
           sp. JU359 RepID=A9UEE0_9BILA
          Length = 284

 Score =  201 bits (512), Expect = 2e-50
 Identities = 102/156 (65%), Positives = 124/156 (79%)
 Frame = +2

Query: 68  LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
           +S+ AQ NATLL  + +R++L SK +   ++L  +AF WLL E+E RF QA+A  GEMVG
Sbjct: 30  ISKQAQYNATLLMXILLRSTLCSKKMGMAYKLDSEAFEWLLGEVEQRFNQAIAQPGEMVG 89

Query: 248 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
           A AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ KTPSL V+L+G A 
Sbjct: 90  ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKKLKTPSLTVFLQGAAA 149

Query: 428 HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENT 535
            DAE+AK V  +L+HTTLR VT  T +YYDPD +NT
Sbjct: 150 KDAEKAKDVLCKLEHTTLRRVTTNTAIYYDPDAKNT 185

[99][TOP]
>UniRef100_P35084 DNA-directed RNA polymerase II subunit rpb1 n=1 Tax=Dictyostelium
            discoideum RepID=RPB1_DICDI
          Length = 1727

 Score =  201 bits (512), Expect = 2e-50
 Identities = 102/163 (62%), Positives = 126/163 (77%)
 Frame = +2

Query: 50   DEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAP 229
            DE           NAT+LF + VR++ ASK VL+E RLT KAF W+  EIE++F QALA 
Sbjct: 1019 DENFNRAWAEVYFNATMLFSILVRSTFASKRVLTEFRLTEKAFLWVCGEIESKFLQALAH 1078

Query: 230  AGEMVGATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVY 409
             GEMVGA AAQSIGEPATQMTLNTFHYAGVS+KNVTLGVPRL+EIIN++K+ KTPSL +Y
Sbjct: 1079 PGEMVGALAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEIINIAKQVKTPSLTIY 1138

Query: 410  LRGDAVHDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENTI 538
            L+     D +RAK V+++L++TTL +VT  TE+YYDPD +NTI
Sbjct: 1139 LKPHMARDMDRAKIVKSQLEYTTLANVTSATEIYYDPDPQNTI 1181

[100][TOP]
>UniRef100_P16356 DNA-directed RNA polymerase II subunit RPB1 n=1 Tax=Caenorhabditis
            elegans RepID=RPB1_CAEEL
          Length = 1852

 Score =  201 bits (512), Expect = 2e-50
 Identities = 102/158 (64%), Positives = 126/158 (79%)
 Frame = +2

Query: 65   ELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMV 244
            E+S+ AQ NATLL  + +R++L +K + ++ +L  +AF WLL EIE+RFQQA+A  GEMV
Sbjct: 1018 EISKQAQYNATLLMNILLRSTLCTKNMCTKSKLNSEAFDWLLGEIESRFQQAIAQPGEMV 1077

Query: 245  GATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDA 424
            GA AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK  KTPSL V+L G A
Sbjct: 1078 GALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKTLKTPSLTVFLTGAA 1137

Query: 425  VHDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENTI 538
              D E+AK V  +L+HTTL+ VT  T +YYDPD +NT+
Sbjct: 1138 AKDPEKAKDVLCKLEHTTLKKVTCNTAIYYDPDPKNTV 1175

[101][TOP]
>UniRef100_P35074 DNA-directed RNA polymerase II subunit RPB1 n=1 Tax=Caenorhabditis
            briggsae RepID=RPB1_CAEBR
          Length = 1853

 Score =  201 bits (512), Expect = 2e-50
 Identities = 102/158 (64%), Positives = 125/158 (79%)
 Frame = +2

Query: 65   ELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMV 244
            E+S+ AQ NATLL  + +R++L +K + +  +L  +AF WLL EIE RFQQA+A  GEMV
Sbjct: 1022 EISKQAQYNATLLMNILLRSTLCTKKMCTSAKLNTEAFDWLLGEIETRFQQAIAQPGEMV 1081

Query: 245  GATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDA 424
            GA AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ KTPSL V+L G A
Sbjct: 1082 GALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKQLKTPSLTVFLTGAA 1141

Query: 425  VHDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENTI 538
              D E+AK V  +L+HTTL+ VT  T +YYDPD +NT+
Sbjct: 1142 AKDPEKAKDVLCKLEHTTLKKVTCNTAIYYDPDPKNTV 1179

[102][TOP]
>UniRef100_UPI0000D5670C PREDICTED: similar to GA13798-PA n=1 Tax=Tribolium castaneum
            RepID=UPI0000D5670C
          Length = 2007

 Score =  201 bits (511), Expect = 3e-50
 Identities = 103/157 (65%), Positives = 122/157 (77%)
 Frame = +2

Query: 68   LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
            LS+ A  NATLLFQ  VR++L +K V  E RL+ +AF WL+ EIE RFQQA    GEMVG
Sbjct: 1025 LSKQANENATLLFQCLVRSTLCTKCVSEEFRLSTEAFEWLIGEIETRFQQAQVNPGEMVG 1084

Query: 248  ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
            A AAQS+GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN+SK+ K PSL V+L G A 
Sbjct: 1085 ALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGAAA 1144

Query: 428  HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENTI 538
             DAE+AK V   L+HTTLR VT  T +YYDPD +NT+
Sbjct: 1145 RDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQNTV 1181

[103][TOP]
>UniRef100_Q9NJN3 RNA polymerase II largest subunit (Fragment) n=1 Tax=Armadillidium
           vulgare RepID=Q9NJN3_ARMVU
          Length = 433

 Score =  201 bits (511), Expect = 3e-50
 Identities = 102/157 (64%), Positives = 122/157 (77%)
 Frame = +2

Query: 68  LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
           +S  A  NATLLF   VR++L +K V  E+RLT +AF WL+ EIE RF QA+A  GEMVG
Sbjct: 186 ISVQANENATLLFHCLVRSTLCTKKVSEEYRLTTEAFNWLMGEIETRFNQAIANPGEMVG 245

Query: 248 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
           A AAQS+GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN+SK+ K PSL V+L G A 
Sbjct: 246 ALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLLGAAA 305

Query: 428 HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENTI 538
            DAE+AK V   L+HTTLR VT  T +YYDPD +NT+
Sbjct: 306 RDAEKAKNVLCRLEHTTLRKVTSNTAIYYDPDPQNTV 342

[104][TOP]
>UniRef100_Q9BNA4 RNA polymerase II largest subunit (Fragment) n=1 Tax=solifugid
           'Sol' RepID=Q9BNA4_9ARAC
          Length = 256

 Score =  201 bits (511), Expect = 3e-50
 Identities = 104/157 (66%), Positives = 122/157 (77%)
 Frame = +2

Query: 68  LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
           LS  A  NATLLF+  +R++L +K V  E RL+ +AF WLL EIE +FQQA    GEMVG
Sbjct: 37  LSIQANDNATLLFRALLRSTLCAKRVSEEFRLSTEAFDWLLEEIETKFQQAQGQPGEMVG 96

Query: 248 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
           A AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIIN+SK+ KTPSL V+L G A 
Sbjct: 97  ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINISKKPKTPSLTVFLTGAAA 156

Query: 428 HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENTI 538
            DAE+AK V   L+HTTLR VT  T +YYDPD +NT+
Sbjct: 157 RDAEKAKDVLCRLEHTTLRKVTANTAIYYDPDPQNTV 193

[105][TOP]
>UniRef100_Q6JU60 DNA-directed RNA polymerase (Fragment) n=1 Tax=Armadillidium
           vulgare RepID=Q6JU60_ARMVU
          Length = 736

 Score =  201 bits (511), Expect = 3e-50
 Identities = 102/157 (64%), Positives = 122/157 (77%)
 Frame = +2

Query: 68  LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
           +S  A  NATLLF   VR++L +K V  E+RLT +AF WL+ EIE RF QA+A  GEMVG
Sbjct: 489 ISVQANENATLLFHCLVRSTLCTKKVSEEYRLTTEAFNWLMGEIETRFNQAIANPGEMVG 548

Query: 248 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
           A AAQS+GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN+SK+ K PSL V+L G A 
Sbjct: 549 ALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLLGAAA 608

Query: 428 HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENTI 538
            DAE+AK V   L+HTTLR VT  T +YYDPD +NT+
Sbjct: 609 RDAEKAKNVLCRLEHTTLRKVTSNTAIYYDPDPQNTV 645

[106][TOP]
>UniRef100_A9QMF1 RNA polymerase 2 (Fragment) n=1 Tax=Pelodera punctata
           RepID=A9QMF1_9PELO
          Length = 605

 Score =  201 bits (511), Expect = 3e-50
 Identities = 101/156 (64%), Positives = 124/156 (79%)
 Frame = +2

Query: 68  LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
           +S+ AQ NATLL  + +R++L SK +  ++RL  + F WLL EIE+RF QA+A  GEMVG
Sbjct: 215 ISKQAQYNATLLMNILIRSTLCSKQMAEKYRLNEEGFEWLLGEIEHRFNQAVAQPGEMVG 274

Query: 248 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
           A AAQS+GEPATQMTLNTFH+AGVSAKNVTLGVPRL+EIINVSK  +TPSL V+L+G A 
Sbjct: 275 ALAAQSLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSKSPRTPSLTVFLQGAAA 334

Query: 428 HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENT 535
            DAE+AK V  +L+HTTLR VT  T +YYDPD +NT
Sbjct: 335 KDAEKAKDVLCKLEHTTLRKVTSNTAIYYDPDPKNT 370

[107][TOP]
>UniRef100_Q7Q3C6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Anopheles gambiae
            RepID=Q7Q3C6_ANOGA
          Length = 1878

 Score =  201 bits (510), Expect = 4e-50
 Identities = 103/157 (65%), Positives = 120/157 (76%)
 Frame = +2

Query: 68   LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
            LS+ A  NATLLFQ  VR++L +K V  E RL  +AF WL+ EIE RFQQA    GEMVG
Sbjct: 1019 LSKQANENATLLFQCLVRSTLCTKYVAEEFRLNNEAFEWLIGEIETRFQQAQCNPGEMVG 1078

Query: 248  ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
            A AAQS+GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN+SKR K PSL V+L G A 
Sbjct: 1079 ALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKRPKAPSLTVFLTGGAA 1138

Query: 428  HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENTI 538
             DAE+AK V   L+HTTLR VT  T +YYDPD + T+
Sbjct: 1139 RDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQRTV 1175

[108][TOP]
>UniRef100_Q6E223 RNA polymerase 2 (Fragment) n=1 Tax=Caenorhabditis sp. DF5070
           RepID=Q6E223_9PELO
          Length = 606

 Score =  201 bits (510), Expect = 4e-50
 Identities = 100/158 (63%), Positives = 126/158 (79%)
 Frame = +2

Query: 65  ELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMV 244
           ++S+ AQ NATLL  + +R++L +K + +  +L  +AF WLL E+E+RF QA+A  GEMV
Sbjct: 220 DISKQAQYNATLLMNILLRSTLCTKKLCTSSKLNTEAFDWLLGEVESRFMQAIAQPGEMV 279

Query: 245 GATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDA 424
           GA AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ KTPSL V+L G A
Sbjct: 280 GALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKQLKTPSLTVFLIGAA 339

Query: 425 VHDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENTI 538
             DAE+AK V  +L+HTTL+ VT  T +YYDPD +NT+
Sbjct: 340 ARDAEKAKDVLCKLEHTTLKKVTANTAIYYDPDPKNTV 377

[109][TOP]
>UniRef100_A9QMQ4 RNA polymerase 2 (Fragment) n=1 Tax=Choriorhabditis dudichi
           RepID=A9QMQ4_9BILA
          Length = 380

 Score =  201 bits (510), Expect = 4e-50
 Identities = 101/152 (66%), Positives = 121/152 (79%)
 Frame = +2

Query: 80  AQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAA 259
           AQ NATLL  + +R++L SK + + H+L  +AF WLL E+E RFQQA+A  GEMVGA AA
Sbjct: 1   AQYNATLLMNILIRSTLCSKKMATTHKLNAEAFEWLLGEVETRFQQAIAQPGEMVGALAA 60

Query: 260 QSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 439
           QS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK  KTPSL  +L+G A  DAE
Sbjct: 61  QSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKTLKTPSLTCFLQGAAAKDAE 120

Query: 440 RAKQVQAELQHTTLRHVTHMTEVYYDPDLENT 535
           +AK V  +L+HTTLR VT  T +YYDP+ +NT
Sbjct: 121 KAKDVLCKLEHTTLRKVTLNTAIYYDPEPKNT 152

[110][TOP]
>UniRef100_A9QMP7 RNA polymerase 2 (Fragment) n=1 Tax=Rhabditoides inermis
           RepID=A9QMP7_9BILA
          Length = 440

 Score =  201 bits (510), Expect = 4e-50
 Identities = 101/156 (64%), Positives = 123/156 (78%)
 Frame = +2

Query: 68  LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
           +S+ AQ NATLL  + VR++L SK +   ++L  +AF WLL E+E RFQQA+A  GEMVG
Sbjct: 193 ISKQAQYNATLLMNILVRSTLCSKKMAEHYKLNSEAFEWLLGEVETRFQQAIAQPGEMVG 252

Query: 248 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
             AAQS+GEPATQMTLNTFH+AGVSAKNVTLGVPRL+EIINVSK+ KTPSL V+L G A 
Sbjct: 253 PLAAQSLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSKQPKTPSLTVFLEGAAA 312

Query: 428 HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENT 535
            DAE+AK V  +L+HTTL+ VT  T +YYDPD +NT
Sbjct: 313 KDAEKAKDVLCKLEHTTLKKVTANTAIYYDPDPKNT 348

[111][TOP]
>UniRef100_A9QMF9 DNA-directed RNA polymerase (Fragment) n=1 Tax=Rhabditis rainai
           RepID=A9QMF9_9BILA
          Length = 618

 Score =  201 bits (510), Expect = 4e-50
 Identities = 101/156 (64%), Positives = 125/156 (80%)
 Frame = +2

Query: 68  LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
           +S+ AQ NATLL  + +R++L SK + S ++L  +AF WLL E+E RF+QA+A  GEMVG
Sbjct: 229 ISKQAQYNATLLMNILLRSTLCSKRMASMYKLNSEAFEWLLGEVETRFKQAIAQPGEMVG 288

Query: 248 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
           A AAQS+GEPATQMTLNTFH+AGVSAKNVTLGVPRL+EIINVSK+ KTPSL V+L G A 
Sbjct: 289 ALAAQSLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSKQLKTPSLSVFLTGAAA 348

Query: 428 HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENT 535
            DAE+ K V  +L+HTTLR VT  T +YYDPD++NT
Sbjct: 349 KDAEKCKDVLCKLEHTTLRKVTSNTAIYYDPDVKNT 384

[112][TOP]
>UniRef100_A9QMF5 DNA-directed RNA polymerase (Fragment) n=1 Tax=Rhabditoides inermis
           RepID=A9QMF5_9BILA
          Length = 630

 Score =  201 bits (510), Expect = 4e-50
 Identities = 101/156 (64%), Positives = 123/156 (78%)
 Frame = +2

Query: 68  LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
           +S+ AQ NATLL  + VR++L SK +   ++L  +AF WLL E+E RFQQA+A  GEMVG
Sbjct: 230 ISKQAQYNATLLMNILVRSTLCSKKMAEHYKLNSEAFEWLLGEVETRFQQAIAQPGEMVG 289

Query: 248 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
             AAQS+GEPATQMTLNTFH+AGVSAKNVTLGVPRL+EIINVSK+ KTPSL V+L G A 
Sbjct: 290 PLAAQSLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSKQPKTPSLTVFLEGAAA 349

Query: 428 HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENT 535
            DAE+AK V  +L+HTTL+ VT  T +YYDPD +NT
Sbjct: 350 KDAEKAKDVLCKLEHTTLKKVTANTAIYYDPDPKNT 385

[113][TOP]
>UniRef100_Q17085 DNA-directed RNA polymerase (Fragment) n=1 Tax=Artemia salina
            RepID=Q17085_ARTSA
          Length = 1341

 Score =  200 bits (509), Expect = 5e-50
 Identities = 102/158 (64%), Positives = 124/158 (78%)
 Frame = +2

Query: 65   ELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMV 244
            +LS+ A  NATLLFQ  VR++L +K +  E+RL  +AF WL+ EIE RFQ A A  GEMV
Sbjct: 940  KLSKQANENATLLFQCLVRSTLCTKRLADEYRLNTEAFEWLIGEIETRFQLAQAVPGEMV 999

Query: 245  GATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDA 424
            GA AAQS+GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIINVS+  K PSL V+L G A
Sbjct: 1000 GAIAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINVSRSPKAPSLTVFLTGTA 1059

Query: 425  VHDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENTI 538
              DAE+AKQV   L+HTTL+ VT  T +YYDPD++NT+
Sbjct: 1060 ARDAEKAKQVLCRLEHTTLKKVTANTAIYYDPDIKNTV 1097

[114][TOP]
>UniRef100_UPI000186D846 predicted protein n=1 Tax=Pediculus humanus corporis
            RepID=UPI000186D846
          Length = 1885

 Score =  200 bits (508), Expect = 6e-50
 Identities = 102/157 (64%), Positives = 122/157 (77%)
 Frame = +2

Query: 68   LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
            LS+ A  NATLLFQ  VR++L +K V  + RL+ +AF WL+ EIE RFQQA    GEMVG
Sbjct: 1014 LSKQANENATLLFQCLVRSTLCTKCVSEDMRLSTEAFEWLIGEIETRFQQAQCAPGEMVG 1073

Query: 248  ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
            A AAQS+GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN+SK+ K PSL V+L G A 
Sbjct: 1074 ALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGAAA 1133

Query: 428  HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENTI 538
             DAE+AK V   L+HTTLR VT  T +YYDPD +NT+
Sbjct: 1134 RDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQNTV 1170

[115][TOP]
>UniRef100_B7PJA3 DNA-directed RNA polymerase (Fragment) n=1 Tax=Ixodes scapularis
            RepID=B7PJA3_IXOSC
          Length = 1937

 Score =  200 bits (508), Expect = 6e-50
 Identities = 104/157 (66%), Positives = 121/157 (77%)
 Frame = +2

Query: 68   LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
            LS  A  NATLLF+  +RA+L SK V  E RL+ ++F WLL EIE RF Q+    GEMVG
Sbjct: 1029 LSIQANENATLLFRSLLRATLCSKRVAEEFRLSTESFEWLLGEIETRFHQSQGQPGEMVG 1088

Query: 248  ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
            A AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIIN+SK+ KTPSL V+L G A 
Sbjct: 1089 ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINISKKPKTPSLTVFLTGAAA 1148

Query: 428  HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENTI 538
             DAE+AK V   L+HTTLR VT  T +YYDPD +NT+
Sbjct: 1149 RDAEKAKDVLCRLEHTTLRKVTANTAIYYDPDPQNTV 1185

[116][TOP]
>UniRef100_B4NDK9 DNA-directed RNA polymerase n=1 Tax=Drosophila willistoni
            RepID=B4NDK9_DROWI
          Length = 1890

 Score =  200 bits (508), Expect = 6e-50
 Identities = 102/157 (64%), Positives = 122/157 (77%)
 Frame = +2

Query: 68   LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
            +S+ A  NATLLFQ  VR++L +K V  E RL+ +AF WL+ EIE RFQQA A  GEMVG
Sbjct: 1021 ISKQANENATLLFQCLVRSTLCTKYVSEEFRLSTEAFEWLIGEIETRFQQAQANPGEMVG 1080

Query: 248  ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
            A AAQS+GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN+SK+ K PSL V+L G A 
Sbjct: 1081 ALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGGAA 1140

Query: 428  HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENTI 538
             DAE+AK V   L+HTTLR VT  T +YYDPD + T+
Sbjct: 1141 RDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQRTV 1177

[117][TOP]
>UniRef100_A9QME7 DNA-directed RNA polymerase (Fragment) n=1 Tax=Pellioditis
           mediterranea RepID=A9QME7_9PELO
          Length = 618

 Score =  200 bits (508), Expect = 6e-50
 Identities = 101/156 (64%), Positives = 123/156 (78%)
 Frame = +2

Query: 68  LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
           +S+ AQ NATLL  + +R++L SK +   ++L  +AF WLL E+E RF+QA+A  GEMVG
Sbjct: 235 ISKQAQYNATLLMNILLRSTLCSKKMAVSYKLNSEAFEWLLGEVETRFKQAIAQPGEMVG 294

Query: 248 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
             AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK  KTPSL V+L G A 
Sbjct: 295 PLAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKTLKTPSLTVFLLGAAA 354

Query: 428 HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENT 535
            DAE+AK V  +L+HTTLR VT  T +YYDPD++NT
Sbjct: 355 KDAEKAKDVLCKLEHTTLRKVTANTAIYYDPDVKNT 390

[118][TOP]
>UniRef100_P18616 DNA-directed RNA polymerase II subunit RPB1 n=1 Tax=Arabidopsis
            thaliana RepID=RPB1_ARATH
          Length = 1840

 Score =  200 bits (508), Expect = 6e-50
 Identities = 107/165 (64%), Positives = 128/165 (77%)
 Frame = +2

Query: 44   PQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQAL 223
            P D+AL   S  AQ NATL F + +R++LASK VL E++L+R+AF W++ EIE+RF Q+L
Sbjct: 1022 PGDDAL---SVEAQKNATLFFNILLRSTLASKRVLEEYKLSREAFEWVIGEIESRFLQSL 1078

Query: 224  APAGEMVGATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLV 403
               GEM+G  AAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINV+KR KTPSL 
Sbjct: 1079 VAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLS 1138

Query: 404  VYLRGDAVHDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENTI 538
            VYL  +A    E AK VQ  L++TTLR VT  TEV+YDPD  +TI
Sbjct: 1139 VYLTPEASKSKEGAKTVQCALEYTTLRSVTQATEVWYDPDPMSTI 1183

[119][TOP]
>UniRef100_Q99368 DNA-directed RNA polymerase (Fragment) n=1 Tax=Glycine max
           RepID=Q99368_SOYBN
          Length = 977

 Score =  199 bits (507), Expect = 8e-50
 Identities = 103/157 (65%), Positives = 126/157 (80%)
 Frame = +2

Query: 68  LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
           LS+ AQ NATLLF + +R++ ASK VL E+RL+R++F W++ EIE+RF Q+L   GEM+G
Sbjct: 217 LSQEAQKNATLLFNILLRSTFASKRVLEEYRLSRESFEWVVGEIESRFLQSLVVPGEMIG 276

Query: 248 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
             AAQSIGEPATQMTLNTFH+AGVSAKNVTLGVPRL+E+INV+K  KTPSL VYL+ DA 
Sbjct: 277 VVAAQSIGEPATQMTLNTFHFAGVSAKNVTLGVPRLRELINVAKSIKTPSLSVYLKPDAG 336

Query: 428 HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENTI 538
              ERAK VQ  L++TTLR VT  TEV+YDPD  +TI
Sbjct: 337 KTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTI 373

[120][TOP]
>UniRef100_Q9XZU9 DNA-directed RNA polymerase n=1 Tax=Drosophila subobscura
            RepID=Q9XZU9_DROSU
          Length = 1889

 Score =  199 bits (507), Expect = 8e-50
 Identities = 101/157 (64%), Positives = 122/157 (77%)
 Frame = +2

Query: 68   LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
            +S+ A  NATLLFQ  +R++L +K V  E RL+ +AF WL+ EIE RFQQA A  GEMVG
Sbjct: 1021 ISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLIGEIETRFQQAQANPGEMVG 1080

Query: 248  ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
            A AAQS+GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN+SK+ K PSL V+L G A 
Sbjct: 1081 ALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGGAA 1140

Query: 428  HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENTI 538
             DAE+AK V   L+HTTLR VT  T +YYDPD + T+
Sbjct: 1141 RDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQRTV 1177

[121][TOP]
>UniRef100_Q9XZU8 DNA-directed RNA polymerase (Fragment) n=1 Tax=Drosophila
            pseudoobscura pseudoobscura RepID=Q9XZU8_DROPS
          Length = 1811

 Score =  199 bits (507), Expect = 8e-50
 Identities = 101/157 (64%), Positives = 122/157 (77%)
 Frame = +2

Query: 68   LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
            +S+ A  NATLLFQ  +R++L +K V  E RL+ +AF WL+ EIE RFQQA A  GEMVG
Sbjct: 943  ISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLIGEIETRFQQAQANPGEMVG 1002

Query: 248  ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
            A AAQS+GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN+SK+ K PSL V+L G A 
Sbjct: 1003 ALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGGAA 1062

Query: 428  HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENTI 538
             DAE+AK V   L+HTTLR VT  T +YYDPD + T+
Sbjct: 1063 RDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQRTV 1099

[122][TOP]
>UniRef100_Q9XZS2 DNA-directed RNA polymerase n=1 Tax=Drosophila madeirensis
            RepID=Q9XZS2_DROMD
          Length = 1889

 Score =  199 bits (507), Expect = 8e-50
 Identities = 101/157 (64%), Positives = 122/157 (77%)
 Frame = +2

Query: 68   LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
            +S+ A  NATLLFQ  +R++L +K V  E RL+ +AF WL+ EIE RFQQA A  GEMVG
Sbjct: 1021 ISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLIGEIETRFQQAQANPGEMVG 1080

Query: 248  ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
            A AAQS+GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN+SK+ K PSL V+L G A 
Sbjct: 1081 ALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGGAA 1140

Query: 428  HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENTI 538
             DAE+AK V   L+HTTLR VT  T +YYDPD + T+
Sbjct: 1141 RDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQRTV 1177

[123][TOP]
>UniRef100_Q9XZS1 DNA-directed RNA polymerase n=1 Tax=Drosophila guanche
            RepID=Q9XZS1_DROGU
          Length = 1889

 Score =  199 bits (507), Expect = 8e-50
 Identities = 101/157 (64%), Positives = 122/157 (77%)
 Frame = +2

Query: 68   LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
            +S+ A  NATLLFQ  +R++L +K V  E RL+ +AF WL+ EIE RFQQA A  GEMVG
Sbjct: 1021 ISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLIGEIETRFQQAQANPGEMVG 1080

Query: 248  ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
            A AAQS+GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN+SK+ K PSL V+L G A 
Sbjct: 1081 ALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGGAA 1140

Query: 428  HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENTI 538
             DAE+AK V   L+HTTLR VT  T +YYDPD + T+
Sbjct: 1141 RDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQRTV 1177

[124][TOP]
>UniRef100_Q6JU03 RNA polymerase II largest subunit (Fragment) n=1 Tax=Podura
           aquatica RepID=Q6JU03_9HEXA
          Length = 306

 Score =  199 bits (507), Expect = 8e-50
 Identities = 102/157 (64%), Positives = 120/157 (76%)
 Frame = +2

Query: 68  LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
           +S+ A  NATLLFQ  VR++L S+ V  E RLT +AF WL+ EIE RFQQAL   GEMVG
Sbjct: 37  MSQKANANATLLFQCLVRSTLCSRRVAEEFRLTTEAFEWLIGEIETRFQQALVQPGEMVG 96

Query: 248 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
           A AAQS+GEPATQMTLNTFH+AGVS+KNVT GVPRL+EIIN+SKR K PSL V+L G A 
Sbjct: 97  ALAAQSLGEPATQMTLNTFHFAGVSSKNVTXGVPRLKEIINISKRPKAPSLTVFLTGAAA 156

Query: 428 HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENTI 538
            DAE+AK V   L+HTTLR VT  T +YYDP+   T+
Sbjct: 157 RDAEKAKNVLCRLEHTTLRKVTGNTAIYYDPEPTKTV 193

[125][TOP]
>UniRef100_Q29IN2 DNA-directed RNA polymerase n=1 Tax=Drosophila pseudoobscura
            pseudoobscura RepID=Q29IN2_DROPS
          Length = 1889

 Score =  199 bits (507), Expect = 8e-50
 Identities = 101/157 (64%), Positives = 122/157 (77%)
 Frame = +2

Query: 68   LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
            +S+ A  NATLLFQ  +R++L +K V  E RL+ +AF WL+ EIE RFQQA A  GEMVG
Sbjct: 1021 ISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLIGEIETRFQQAQANPGEMVG 1080

Query: 248  ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
            A AAQS+GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN+SK+ K PSL V+L G A 
Sbjct: 1081 ALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGGAA 1140

Query: 428  HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENTI 538
             DAE+AK V   L+HTTLR VT  T +YYDPD + T+
Sbjct: 1141 RDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQRTV 1177

[126][TOP]
>UniRef100_Q1WKU4 Putative RNA polymerase II 215 kD subunit (Fragment) n=1
           Tax=Drosophila erecta RepID=Q1WKU4_DROER
          Length = 760

 Score =  199 bits (507), Expect = 8e-50
 Identities = 101/157 (64%), Positives = 122/157 (77%)
 Frame = +2

Query: 68  LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
           +S+ A  NATLLFQ  +R++L +K V  E RL+ +AF WL+ EIE RFQQA A  GEMVG
Sbjct: 163 ISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLIGEIETRFQQAQANPGEMVG 222

Query: 248 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
           A AAQS+GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN+SK+ K PSL V+L G A 
Sbjct: 223 ALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGGAA 282

Query: 428 HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENTI 538
            DAE+AK V   L+HTTLR VT  T +YYDPD + T+
Sbjct: 283 RDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQRTV 319

[127][TOP]
>UniRef100_Q1WKU3 Putative RNA polymerase II 215 kD subunit (Fragment) n=1
           Tax=Drosophila orena RepID=Q1WKU3_DROOR
          Length = 750

 Score =  199 bits (507), Expect = 8e-50
 Identities = 101/157 (64%), Positives = 122/157 (77%)
 Frame = +2

Query: 68  LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
           +S+ A  NATLLFQ  +R++L +K V  E RL+ +AF WL+ EIE RFQQA A  GEMVG
Sbjct: 163 ISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLIGEIETRFQQAQANPGEMVG 222

Query: 248 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
           A AAQS+GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN+SK+ K PSL V+L G A 
Sbjct: 223 ALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGGAA 282

Query: 428 HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENTI 538
            DAE+AK V   L+HTTLR VT  T +YYDPD + T+
Sbjct: 283 RDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQRTV 319

[128][TOP]
>UniRef100_Q1WKU0 Putative RNA polymerase II 215 kD subunit (Fragment) n=2
           Tax=melanogaster subgroup RepID=Q1WKU0_DROYA
          Length = 766

 Score =  199 bits (507), Expect = 8e-50
 Identities = 101/157 (64%), Positives = 122/157 (77%)
 Frame = +2

Query: 68  LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
           +S+ A  NATLLFQ  +R++L +K V  E RL+ +AF WL+ EIE RFQQA A  GEMVG
Sbjct: 163 ISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLIGEIETRFQQAQANPGEMVG 222

Query: 248 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
           A AAQS+GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN+SK+ K PSL V+L G A 
Sbjct: 223 ALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGGAA 282

Query: 428 HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENTI 538
            DAE+AK V   L+HTTLR VT  T +YYDPD + T+
Sbjct: 283 RDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQRTV 319

[129][TOP]
>UniRef100_Q1PQE9 CG1554 (Fragment) n=1 Tax=Drosophila miranda RepID=Q1PQE9_DROMI
          Length = 335

 Score =  199 bits (507), Expect = 8e-50
 Identities = 101/157 (64%), Positives = 122/157 (77%)
 Frame = +2

Query: 68  LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
           +S+ A  NATLLFQ  +R++L +K V  E RL+ +AF WL+ EIE RFQQA A  GEMVG
Sbjct: 18  ISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLIGEIETRFQQAQANPGEMVG 77

Query: 248 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
           A AAQS+GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN+SK+ K PSL V+L G A 
Sbjct: 78  ALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGGAA 137

Query: 428 HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENTI 538
            DAE+AK V   L+HTTLR VT  T +YYDPD + T+
Sbjct: 138 RDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQRTV 174

[130][TOP]
>UniRef100_B4PY98 DNA-directed RNA polymerase n=1 Tax=Drosophila yakuba
            RepID=B4PY98_DROYA
          Length = 1889

 Score =  199 bits (507), Expect = 8e-50
 Identities = 101/157 (64%), Positives = 122/157 (77%)
 Frame = +2

Query: 68   LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
            +S+ A  NATLLFQ  +R++L +K V  E RL+ +AF WL+ EIE RFQQA A  GEMVG
Sbjct: 1021 ISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLIGEIETRFQQAQANPGEMVG 1080

Query: 248  ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
            A AAQS+GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN+SK+ K PSL V+L G A 
Sbjct: 1081 ALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGGAA 1140

Query: 428  HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENTI 538
             DAE+AK V   L+HTTLR VT  T +YYDPD + T+
Sbjct: 1141 RDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQRTV 1177

[131][TOP]
>UniRef100_B4MAN9 DNA-directed RNA polymerase n=1 Tax=Drosophila virilis
            RepID=B4MAN9_DROVI
          Length = 1889

 Score =  199 bits (507), Expect = 8e-50
 Identities = 101/157 (64%), Positives = 122/157 (77%)
 Frame = +2

Query: 68   LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
            +S+ A  NATLLFQ  +R++L +K V  E RL+ +AF WL+ EIE RFQQA A  GEMVG
Sbjct: 1021 ISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLIGEIETRFQQAQANPGEMVG 1080

Query: 248  ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
            A AAQS+GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN+SK+ K PSL V+L G A 
Sbjct: 1081 ALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGGAA 1140

Query: 428  HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENTI 538
             DAE+AK V   L+HTTLR VT  T +YYDPD + T+
Sbjct: 1141 RDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQRTV 1177

[132][TOP]
>UniRef100_B4L732 DNA-directed RNA polymerase n=1 Tax=Drosophila mojavensis
            RepID=B4L732_DROMO
          Length = 1889

 Score =  199 bits (507), Expect = 8e-50
 Identities = 101/157 (64%), Positives = 122/157 (77%)
 Frame = +2

Query: 68   LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
            +S+ A  NATLLFQ  +R++L +K V  E RL+ +AF WL+ EIE RFQQA A  GEMVG
Sbjct: 1021 ISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLIGEIETRFQQAQANPGEMVG 1080

Query: 248  ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
            A AAQS+GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN+SK+ K PSL V+L G A 
Sbjct: 1081 ALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGGAA 1140

Query: 428  HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENTI 538
             DAE+AK V   L+HTTLR VT  T +YYDPD + T+
Sbjct: 1141 RDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQRTV 1177

[133][TOP]
>UniRef100_B4JXA6 DNA-directed RNA polymerase n=1 Tax=Drosophila grimshawi
            RepID=B4JXA6_DROGR
          Length = 1889

 Score =  199 bits (507), Expect = 8e-50
 Identities = 101/157 (64%), Positives = 122/157 (77%)
 Frame = +2

Query: 68   LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
            +S+ A  NATLLFQ  +R++L +K V  E RL+ +AF WL+ EIE RFQQA A  GEMVG
Sbjct: 1021 ISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLIGEIETRFQQAQANPGEMVG 1080

Query: 248  ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
            A AAQS+GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN+SK+ K PSL V+L G A 
Sbjct: 1081 ALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGGAA 1140

Query: 428  HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENTI 538
             DAE+AK V   L+HTTLR VT  T +YYDPD + T+
Sbjct: 1141 RDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQRTV 1177

[134][TOP]
>UniRef100_B4H2R8 DNA-directed RNA polymerase n=1 Tax=Drosophila persimilis
            RepID=B4H2R8_DROPE
          Length = 1804

 Score =  199 bits (507), Expect = 8e-50
 Identities = 101/157 (64%), Positives = 122/157 (77%)
 Frame = +2

Query: 68   LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
            +S+ A  NATLLFQ  +R++L +K V  E RL+ +AF WL+ EIE RFQQA A  GEMVG
Sbjct: 1021 ISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLIGEIETRFQQAQANPGEMVG 1080

Query: 248  ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
            A AAQS+GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN+SK+ K PSL V+L G A 
Sbjct: 1081 ALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGGAA 1140

Query: 428  HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENTI 538
             DAE+AK V   L+HTTLR VT  T +YYDPD + T+
Sbjct: 1141 RDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQRTV 1177

[135][TOP]
>UniRef100_B3NUC1 DNA-directed RNA polymerase n=1 Tax=Drosophila erecta
            RepID=B3NUC1_DROER
          Length = 1889

 Score =  199 bits (507), Expect = 8e-50
 Identities = 101/157 (64%), Positives = 122/157 (77%)
 Frame = +2

Query: 68   LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
            +S+ A  NATLLFQ  +R++L +K V  E RL+ +AF WL+ EIE RFQQA A  GEMVG
Sbjct: 1021 ISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLIGEIETRFQQAQANPGEMVG 1080

Query: 248  ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
            A AAQS+GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN+SK+ K PSL V+L G A 
Sbjct: 1081 ALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGGAA 1140

Query: 428  HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENTI 538
             DAE+AK V   L+HTTLR VT  T +YYDPD + T+
Sbjct: 1141 RDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQRTV 1177

[136][TOP]
>UniRef100_A9QMT0 RNA polymerase 2 (Fragment) n=1 Tax=Protorhabditis sp. JB122
           RepID=A9QMT0_9BILA
          Length = 271

 Score =  199 bits (507), Expect = 8e-50
 Identities = 101/157 (64%), Positives = 123/157 (78%)
 Frame = +2

Query: 68  LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
           +S+ AQ NATLL  + +R++L SK +   ++L  +AF WLL E+E RF  A+A  GEMVG
Sbjct: 30  ISKQAQYNATLLMNILLRSTLCSKKMGMSYKLDSEAFEWLLGEVEQRFNSAIAQPGEMVG 89

Query: 248 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
           A AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ KTPSL V+L G A 
Sbjct: 90  ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKQLKTPSLTVFLEGAAA 149

Query: 428 HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENTI 538
            DAE+AK V  +L+HTTLR VT  T +YYDPD +NT+
Sbjct: 150 KDAEKAKDVLCKLEHTTLRKVTANTAIYYDPDPKNTV 186

[137][TOP]
>UniRef100_A9QMQ9 DNA-directed RNA polymerase (Fragment) n=1 Tax=Caenorhabditis sp.
           JU727 RepID=A9QMQ9_9PELO
          Length = 620

 Score =  199 bits (507), Expect = 8e-50
 Identities = 101/158 (63%), Positives = 124/158 (78%)
 Frame = +2

Query: 65  ELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMV 244
           E+S+ AQ NATLL  + +R++L +K + +  +L  +AF WLL EIE RFQ A+A  GEMV
Sbjct: 237 EISKQAQYNATLLMNILLRSTLCTKKMCTSAKLNTEAFDWLLGEIETRFQSAIAQPGEMV 296

Query: 245 GATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDA 424
           GA AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ KTPSL V+L G A
Sbjct: 297 GALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKQLKTPSLTVFLTGAA 356

Query: 425 VHDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENTI 538
             D E+AK V  +L+HTTL+ VT  T +YYDPD +NT+
Sbjct: 357 AKDPEKAKDVLCKLEHTTLKKVTCNTAIYYDPDPKNTV 394

[138][TOP]
>UniRef100_Q1WKU2 Putative RNA polymerase II 215 kD subunit (Fragment) n=1
           Tax=Drosophila simulans RepID=Q1WKU2_DROSI
          Length = 746

 Score =  199 bits (506), Expect = 1e-49
 Identities = 101/157 (64%), Positives = 122/157 (77%)
 Frame = +2

Query: 68  LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
           +S+ A  NATLLFQ  +R++L +K V  E RL+ +AF WL+ EIE RFQQA A  GEMVG
Sbjct: 163 ISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLVGEIETRFQQAQANPGEMVG 222

Query: 248 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
           A AAQS+GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN+SK+ K PSL V+L G A 
Sbjct: 223 ALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGGAA 282

Query: 428 HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENTI 538
            DAE+AK V   L+HTTLR VT  T +YYDPD + T+
Sbjct: 283 RDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQRTV 319

[139][TOP]
>UniRef100_B4IK28 DNA-directed RNA polymerase n=1 Tax=Drosophila sechellia
            RepID=B4IK28_DROSE
          Length = 1887

 Score =  199 bits (506), Expect = 1e-49
 Identities = 101/157 (64%), Positives = 122/157 (77%)
 Frame = +2

Query: 68   LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
            +S+ A  NATLLFQ  +R++L +K V  E RL+ +AF WL+ EIE RFQQA A  GEMVG
Sbjct: 1021 ISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLVGEIETRFQQAQANPGEMVG 1080

Query: 248  ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
            A AAQS+GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN+SK+ K PSL V+L G A 
Sbjct: 1081 ALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGGAA 1140

Query: 428  HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENTI 538
             DAE+AK V   L+HTTLR VT  T +YYDPD + T+
Sbjct: 1141 RDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQRTV 1177

[140][TOP]
>UniRef100_B3MQ29 DNA-directed RNA polymerase n=1 Tax=Drosophila ananassae
            RepID=B3MQ29_DROAN
          Length = 1889

 Score =  199 bits (506), Expect = 1e-49
 Identities = 101/157 (64%), Positives = 122/157 (77%)
 Frame = +2

Query: 68   LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
            +S+ A  NATLLFQ  +R++L +K V  E RL+ +AF WL+ EIE RFQQA A  GEMVG
Sbjct: 1021 ISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLIGEIETRFQQAQANPGEMVG 1080

Query: 248  ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
            A AAQS+GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN+SK+ K PSL V+L G A 
Sbjct: 1081 ALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGGAA 1140

Query: 428  HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENTI 538
             DAE+AK V   L+HTTLR VT  T +YYDPD + T+
Sbjct: 1141 RDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPKRTV 1177

[141][TOP]
>UniRef100_A9YGC1 RNA polymerase II 215 kD subunit (Fragment) n=2 Tax=melanogaster
           subgroup RepID=A9YGC1_DROME
          Length = 247

 Score =  199 bits (506), Expect = 1e-49
 Identities = 101/157 (64%), Positives = 122/157 (77%)
 Frame = +2

Query: 68  LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
           +S+ A  NATLLFQ  +R++L +K V  E RL+ +AF WL+ EIE RFQQA A  GEMVG
Sbjct: 78  ISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLVGEIETRFQQAQANPGEMVG 137

Query: 248 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
           A AAQS+GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN+SK+ K PSL V+L G A 
Sbjct: 138 ALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGGAA 197

Query: 428 HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENTI 538
            DAE+AK V   L+HTTLR VT  T +YYDPD + T+
Sbjct: 198 RDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQRTV 234

[142][TOP]
>UniRef100_A9UNH9 DNA-directed RNA polymerase n=1 Tax=Drosophila melanogaster
            RepID=A9UNH9_DROME
          Length = 1887

 Score =  199 bits (506), Expect = 1e-49
 Identities = 101/157 (64%), Positives = 122/157 (77%)
 Frame = +2

Query: 68   LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
            +S+ A  NATLLFQ  +R++L +K V  E RL+ +AF WL+ EIE RFQQA A  GEMVG
Sbjct: 1021 ISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLVGEIETRFQQAQANPGEMVG 1080

Query: 248  ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
            A AAQS+GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN+SK+ K PSL V+L G A 
Sbjct: 1081 ALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGGAA 1140

Query: 428  HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENTI 538
             DAE+AK V   L+HTTLR VT  T +YYDPD + T+
Sbjct: 1141 RDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQRTV 1177

[143][TOP]
>UniRef100_A9QMT2 RNA polymerase 2 (Fragment) n=1 Tax=Pellioditis typica
           RepID=A9QMT2_9PELO
          Length = 488

 Score =  199 bits (506), Expect = 1e-49
 Identities = 98/156 (62%), Positives = 125/156 (80%)
 Frame = +2

Query: 68  LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
           +S+ AQ NATLL  + +R++L SK + S +RL  +AF W+L E+E RF+QA+A  GEMVG
Sbjct: 220 ISKQAQYNATLLMNILIRSTLCSKKMASTYRLNSEAFEWMLGEVETRFKQAIAQPGEMVG 279

Query: 248 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
           A AAQS+GEPATQMTLNTFH+AGVSAKNVTLGVPRL+EIINVSK+ KTPSL  +L+G A 
Sbjct: 280 ALAAQSLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSKQLKTPSLTCFLQGAAA 339

Query: 428 HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENT 535
            D ++ K+V  +L+HTTLR VT  T +YYDPD++NT
Sbjct: 340 KDHDKTKEVLCKLEHTTLRKVTANTAIYYDPDVKNT 375

[144][TOP]
>UniRef100_A9QMS3 RNA polymerase 2 (Fragment) n=1 Tax=Pelodera punctata
           RepID=A9QMS3_9PELO
          Length = 363

 Score =  199 bits (506), Expect = 1e-49
 Identities = 100/156 (64%), Positives = 123/156 (78%)
 Frame = +2

Query: 68  LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
           +S+ AQ NATLL  + +R++L SK +  ++RL  + F WLL EIE+RF QA+A  GEMVG
Sbjct: 9   ISKQAQYNATLLMNILIRSTLCSKQMAEKYRLNEEGFEWLLGEIEHRFNQAVAQPGEMVG 68

Query: 248 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
           A A QS+GEPATQMTLNTFH+AGVSAKNVTLGVPRL+EIINVSK  +TPSL V+L+G A 
Sbjct: 69  ALAXQSLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSKSPRTPSLTVFLQGAAA 128

Query: 428 HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENT 535
            DAE+AK V  +L+HTTLR VT  T +YYDPD +NT
Sbjct: 129 KDAEKAKDVLCKLEHTTLRKVTSNTAIYYDPDPKNT 164

[145][TOP]
>UniRef100_A9QME0 DNA-directed RNA polymerase (Fragment) n=1 Tax=Pellioditis typica
           RepID=A9QME0_9PELO
          Length = 633

 Score =  199 bits (506), Expect = 1e-49
 Identities = 98/156 (62%), Positives = 125/156 (80%)
 Frame = +2

Query: 68  LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
           +S+ AQ NATLL  + +R++L SK + S +RL  +AF W+L E+E RF+QA+A  GEMVG
Sbjct: 234 ISKQAQYNATLLMNILIRSTLCSKKMASTYRLNSEAFEWMLGEVETRFKQAIAQPGEMVG 293

Query: 248 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
           A AAQS+GEPATQMTLNTFH+AGVSAKNVTLGVPRL+EIINVSK+ KTPSL  +L+G A 
Sbjct: 294 ALAAQSLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSKQLKTPSLTCFLQGAAA 353

Query: 428 HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENT 535
            D ++ K+V  +L+HTTLR VT  T +YYDPD++NT
Sbjct: 354 KDHDKTKEVLCKLEHTTLRKVTANTAIYYDPDVKNT 389

[146][TOP]
>UniRef100_P04052 DNA-directed RNA polymerase II subunit RPB1 n=2 Tax=Drosophila
            melanogaster RepID=RPB1_DROME
          Length = 1887

 Score =  199 bits (506), Expect = 1e-49
 Identities = 101/157 (64%), Positives = 122/157 (77%)
 Frame = +2

Query: 68   LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
            +S+ A  NATLLFQ  +R++L +K V  E RL+ +AF WL+ EIE RFQQA A  GEMVG
Sbjct: 1021 ISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLVGEIETRFQQAQANPGEMVG 1080

Query: 248  ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
            A AAQS+GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN+SK+ K PSL V+L G A 
Sbjct: 1081 ALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGGAA 1140

Query: 428  HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENTI 538
             DAE+AK V   L+HTTLR VT  T +YYDPD + T+
Sbjct: 1141 RDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQRTV 1177

[147][TOP]
>UniRef100_C5Y387 DNA-directed RNA polymerase n=1 Tax=Sorghum bicolor
            RepID=C5Y387_SORBI
          Length = 1874

 Score =  199 bits (505), Expect = 1e-49
 Identities = 105/165 (63%), Positives = 125/165 (75%)
 Frame = +2

Query: 44   PQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQAL 223
            P D+A+   S  AQ NATL F +H+RA+ ASK VL E+RLTR+AF W++ EI  RF Q+L
Sbjct: 1020 PGDDAI---SIEAQKNATLFFNIHLRATFASKRVLREYRLTREAFEWIIDEIVWRFSQSL 1076

Query: 224  APAGEMVGATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLV 403
                EM+G  AAQSIGEPATQMTLNTFH+AGVSAKNVTLGVPRL+EIINV+K+ KTPSL 
Sbjct: 1077 VAPSEMIGCVAAQSIGEPATQMTLNTFHFAGVSAKNVTLGVPRLREIINVAKKIKTPSLS 1136

Query: 404  VYLRGDAVHDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENTI 538
            VYL+ +     E AK VQ  L++TTLR VTH TEV+YDPD   TI
Sbjct: 1137 VYLKPEVNKTKELAKSVQCALEYTTLRSVTHATEVWYDPDPMGTI 1181

[148][TOP]
>UniRef100_B9FZ51 DNA-directed RNA polymerase n=1 Tax=Oryza sativa Japonica Group
            RepID=B9FZ51_ORYSJ
          Length = 1526

 Score =  199 bits (505), Expect = 1e-49
 Identities = 104/165 (63%), Positives = 127/165 (76%)
 Frame = +2

Query: 44   PQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQAL 223
            P D+A+   S  AQ NATL F + +R++ ASK VL E+RLT++AF W++ EIE+RF Q+L
Sbjct: 691  PGDDAM---SIEAQKNATLFFNILLRSTFASKRVLKEYRLTKEAFEWVIGEIESRFLQSL 747

Query: 224  APAGEMVGATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLV 403
               GEM+G  AAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINV+K+ KTPSL 
Sbjct: 748  VAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLS 807

Query: 404  VYLRGDAVHDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENTI 538
            VYL+ +     E AK VQ  L++TTLR VTH TE++YDPD   TI
Sbjct: 808  VYLKPEVNKKKELAKNVQCALEYTTLRSVTHATEIWYDPDPLGTI 852

[149][TOP]
>UniRef100_B8BAW1 DNA-directed RNA polymerase n=1 Tax=Oryza sativa Indica Group
            RepID=B8BAW1_ORYSI
          Length = 1449

 Score =  199 bits (505), Expect = 1e-49
 Identities = 104/165 (63%), Positives = 127/165 (76%)
 Frame = +2

Query: 44   PQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQAL 223
            P D+A+   S  AQ NATL F + +R++ ASK VL E+RLT++AF W++ EIE+RF Q+L
Sbjct: 990  PGDDAM---SIEAQKNATLFFNILLRSTFASKRVLKEYRLTKEAFEWVIGEIESRFLQSL 1046

Query: 224  APAGEMVGATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLV 403
               GEM+G  AAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINV+K+ KTPSL 
Sbjct: 1047 VAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLS 1106

Query: 404  VYLRGDAVHDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENTI 538
            VYL+ +     E AK VQ  L++TTLR VTH TE++YDPD   TI
Sbjct: 1107 VYLKPEVNKKKELAKNVQCALEYTTLRSVTHATEIWYDPDPLGTI 1151

[150][TOP]
>UniRef100_A8BDP3 RNA polymerase II largest subunit (Fragment) n=1 Tax=Priapulus
           caudatus RepID=A8BDP3_PRICU
          Length = 434

 Score =  199 bits (505), Expect = 1e-49
 Identities = 102/162 (62%), Positives = 122/162 (75%)
 Frame = +2

Query: 53  EALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPA 232
           E    LS+ AQ NATL     +R++L +K V  E++LT ++F WLL E+E+RFQ A A  
Sbjct: 164 EGEDRLSKQAQENATLNINAMLRSTLCTKRVAEEYKLTTESFEWLLGEVESRFQHAQAQP 223

Query: 233 GEMVGATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYL 412
           GEMVG  AAQS+GEPATQMTLNTFHYAGVSAKNVTLG PRL+EIINVSK+ KTPSL V+L
Sbjct: 224 GEMVGPLAAQSLGEPATQMTLNTFHYAGVSAKNVTLGXPRLKEIINVSKKPKTPSLTVFL 283

Query: 413 RGDAVHDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENTI 538
            G A  DAE+AK V   L+HTTLR VT  T +YYDPD +NT+
Sbjct: 284 TGQAARDAEKAKDVLCRLEHTTLRKVTANTAIYYDPDPQNTV 325

[151][TOP]
>UniRef100_A7S8F9 DNA-directed RNA polymerase n=1 Tax=Nematostella vectensis
            RepID=A7S8F9_NEMVE
          Length = 1929

 Score =  199 bits (505), Expect = 1e-49
 Identities = 102/157 (64%), Positives = 120/157 (76%)
 Frame = +2

Query: 68   LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
            +S+ AQ NATLLF + +R++L +K V  E  L+ +AF WLL EIE RF  +    GEMVG
Sbjct: 1025 ISKQAQFNATLLFNILLRSTLCTKRVAEEFHLSSEAFEWLLGEIETRFNHSHVKPGEMVG 1084

Query: 248  ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
            A AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ KTPSL V+L G A 
Sbjct: 1085 ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKKPKTPSLTVFLIGQAA 1144

Query: 428  HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENTI 538
             DAE AK V   L+HTTLR VT  T +YYDPD +NT+
Sbjct: 1145 RDAEMAKAVLCRLEHTTLRKVTANTAIYYDPDPQNTV 1181

[152][TOP]
>UniRef100_Q9NJN1 RNA polymerase II largest subunit (Fragment) n=1 Tax=Semibalanus
           balanoides RepID=Q9NJN1_SEMBA
          Length = 256

 Score =  198 bits (504), Expect = 2e-49
 Identities = 98/157 (62%), Positives = 123/157 (78%)
 Frame = +2

Query: 68  LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
           LS+TA  NAT+LF   VR++L ++ V  E+RL+ +AF WL+ EI+ RF QA+   GEMVG
Sbjct: 37  LSKTANANATILFSCLVRSTLCTRRVAEEYRLSSEAFEWLIGEIDTRFHQAMVNPGEMVG 96

Query: 248 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
           A AAQS+GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN+SK+ K PSL V+L G + 
Sbjct: 97  ALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGASA 156

Query: 428 HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENTI 538
            DAE+AK V   L+HTTLR VT  T +YYDPD +NT+
Sbjct: 157 RDAEKAKSVLCRLEHTTLRKVTANTAIYYDPDPQNTV 193

[153][TOP]
>UniRef100_Q9NJL5 RNA polymerase II largest subunit (Fragment) n=1 Tax=Metajapyx
           subterraneus RepID=Q9NJL5_9HEXA
          Length = 256

 Score =  198 bits (504), Expect = 2e-49
 Identities = 101/157 (64%), Positives = 122/157 (77%)
 Frame = +2

Query: 68  LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
           LS+ A  NATLLFQ  VR++L ++ V  E RL+ +AF WL+ E+E RFQQA    GEMVG
Sbjct: 37  LSKMANDNATLLFQCLVRSTLCTRRVAXEFRLSSEAFEWLIGEVETRFQQAQVXPGEMVG 96

Query: 248 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
           A AAQS+GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN+SK+ K PSL V+L G A 
Sbjct: 97  ALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGAAA 156

Query: 428 HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENTI 538
            DAE+AK V   L+HTTLR VT  T +YYDPD +NT+
Sbjct: 157 XDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQNTV 193

[154][TOP]
>UniRef100_Q6E226 DNA-directed RNA polymerase (Fragment) n=1 Tax=Caenorhabditis
           plicata RepID=Q6E226_9PELO
          Length = 636

 Score =  198 bits (504), Expect = 2e-49
 Identities = 99/158 (62%), Positives = 123/158 (77%)
 Frame = +2

Query: 65  ELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMV 244
           ++S  AQ NATLL  + +R++L SK + +  +L  +AF WLL E+E+RF QA+A  GEMV
Sbjct: 237 DISRQAQYNATLLMNILLRSTLCSKKLCTTSKLNTEAFDWLLGEVESRFNQAIAQPGEMV 296

Query: 245 GATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDA 424
           GA AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ KTPSL  +L G A
Sbjct: 297 GALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKQLKTPSLTCFLVGSA 356

Query: 425 VHDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENTI 538
             D E+AK V  +L+HTTL+ VT  T +YYDPD +NT+
Sbjct: 357 AKDVEKAKDVLCKLEHTTLKKVTSNTAIYYDPDPKNTV 394

[155][TOP]
>UniRef100_A9QME5 RNA polymerase 2 (Fragment) n=1 Tax=Oscheius dolichura
           RepID=A9QME5_9BILA
          Length = 371

 Score =  198 bits (504), Expect = 2e-49
 Identities = 99/148 (66%), Positives = 121/148 (81%)
 Frame = +2

Query: 92  ATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIG 271
           ATLL  + +R++L +K + S H+L ++AF WLL EIE RF+ A+A  GEMVGA AAQS+G
Sbjct: 1   ATLLMNILLRSTLCAKKMASTHKLNQEAFEWLLGEIETRFKAAVAQPGEMVGALAAQSLG 60

Query: 272 EPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAERAKQ 451
           EPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ KTPSL V+L+G A  DAE+AK 
Sbjct: 61  EPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKQLKTPSLTVFLQGAAAKDAEKAKD 120

Query: 452 VQAELQHTTLRHVTHMTEVYYDPDLENT 535
           V  +L+HTTLR VT  T +YYDPD++NT
Sbjct: 121 VLCKLEHTTLRKVTSNTAIYYDPDMKNT 148

[156][TOP]
>UniRef100_A9QME2 RNA polymerase 2 (Fragment) n=1 Tax=Rhabditis blumi
           RepID=A9QME2_9BILA
          Length = 151

 Score =  198 bits (504), Expect = 2e-49
 Identities = 98/148 (66%), Positives = 120/148 (81%)
 Frame = +2

Query: 92  ATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIG 271
           ATLL  + +R++L S+ +  +H+L  +AF WLL E+E RF+QA+A  GEMVGA AAQS+G
Sbjct: 1   ATLLMNILLRSTLCSRKMAFQHKLNAEAFEWLLGEVETRFKQAIAQPGEMVGALAAQSLG 60

Query: 272 EPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAERAKQ 451
           EPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ KTPSLVV+L G A  DAE+ K 
Sbjct: 61  EPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKQLKTPSLVVFLTGPAAKDAEKCKN 120

Query: 452 VQAELQHTTLRHVTHMTEVYYDPDLENT 535
           V  +L+HTTLR VT  T +YYDPD++NT
Sbjct: 121 VLCKLEHTTLRRVTSNTAIYYDPDVKNT 148

[157][TOP]
>UniRef100_C5YGY9 DNA-directed RNA polymerase n=1 Tax=Sorghum bicolor
            RepID=C5YGY9_SORBI
          Length = 1857

 Score =  198 bits (503), Expect = 2e-49
 Identities = 101/157 (64%), Positives = 123/157 (78%)
 Frame = +2

Query: 68   LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
            +S  AQ NATL F + +R++ ASK VL E+RLT++AF W++ EIE+RF Q+L   GEM+G
Sbjct: 1024 MSIEAQKNATLFFNILLRSTFASKRVLKEYRLTKEAFEWVIGEIESRFLQSLVAPGEMIG 1083

Query: 248  ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
              AAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINV+K+ KTPSL VYL+ +  
Sbjct: 1084 CVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLKPEVN 1143

Query: 428  HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENTI 538
               E AK VQ  L++TTLR VTH TE++YDPD   TI
Sbjct: 1144 QKKELAKNVQCALEYTTLRSVTHATEIWYDPDPLGTI 1180

[158][TOP]
>UniRef100_A9QMF8 DNA-directed RNA polymerase (Fragment) n=1 Tax=Rhabditis sp. SB347
           RepID=A9QMF8_9BILA
          Length = 621

 Score =  198 bits (503), Expect = 2e-49
 Identities = 99/156 (63%), Positives = 123/156 (78%)
 Frame = +2

Query: 68  LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
           +S+ AQ NATLL  + +R++L SK + S ++L  +AF WLL E+E RF+QA+A      G
Sbjct: 238 ISKQAQYNATLLMNILIRSTLCSKKMASTYKLNSEAFEWLLGEVETRFKQAIAXXXXXXG 297

Query: 248 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
           A AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ KTPSL V+L+G A 
Sbjct: 298 ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKQLKTPSLTVFLQGSAA 357

Query: 428 HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENT 535
            DAE+AK V  +L+HTTLR VT  T +YYDPD++NT
Sbjct: 358 KDAEKAKDVLCKLEHTTLRKVTANTAIYYDPDVKNT 393

[159][TOP]
>UniRef100_Q9AXN1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Botryocladia
            uvarioides RepID=Q9AXN1_9FLOR
          Length = 1712

 Score =  197 bits (502), Expect = 3e-49
 Identities = 103/157 (65%), Positives = 118/157 (75%)
 Frame = +2

Query: 68   LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
            L+   Q NAT++FQ+HVR+ LA K V+  HRL   AF W+L EIENRF  A+A  GE +G
Sbjct: 951  LTLETQENATMIFQIHVRSMLACKQVMVRHRLDINAFLWILGEIENRFLGAIAAPGENIG 1010

Query: 248  ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
            A AAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK TKTPSL VYLR    
Sbjct: 1011 AIAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVSKHTKTPSLTVYLRDKYS 1070

Query: 428  HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENTI 538
             D  +AK++QA LQ T L  VT  T +YYDPD E T+
Sbjct: 1071 KDKGKAKEIQASLQATNLYDVTTSTAIYYDPDPETTV 1107

[160][TOP]
>UniRef100_Q6JU18 RNA polymerase II largest subunit (Fragment) n=1 Tax=Mesocyclops
           edax RepID=Q6JU18_9MAXI
          Length = 302

 Score =  197 bits (501), Expect = 4e-49
 Identities = 101/158 (63%), Positives = 123/158 (77%)
 Frame = +2

Query: 65  ELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMV 244
           +LS+ A  NAT LFQ  VR++L SK+V  + RL+ +AF WLL EIE++F QA A  GEMV
Sbjct: 36  KLSKQANENATTLFQCLVRSTLCSKLVAEQFRLSEEAFEWLLGEIESKFMQAQATPGEMV 95

Query: 245 GATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDA 424
           GA AAQSIGEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN+SK+ K PSL V+L G A
Sbjct: 96  GAIAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGAA 155

Query: 425 VHDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENTI 538
             DAE+AK V   L+HTTL+ VT  T +YYDP  +NT+
Sbjct: 156 ARDAEKAKNVLCRLEHTTLKKVTANTAIYYDPFPQNTV 193

[161][TOP]
>UniRef100_Q6E224 DNA-directed RNA polymerase (Fragment) n=1 Tax=Caenorhabditis
           drosophilae RepID=Q6E224_9PELO
          Length = 633

 Score =  197 bits (501), Expect = 4e-49
 Identities = 98/158 (62%), Positives = 125/158 (79%)
 Frame = +2

Query: 65  ELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMV 244
           ++S+ AQ NATLL  + +R++L +K + +  +L  +AF WLL E+E+RF QA+A  GEMV
Sbjct: 236 DISKQAQYNATLLMNILLRSTLCTKKLCTSSKLNTEAFDWLLGEVESRFMQAIAQPGEMV 295

Query: 245 GATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDA 424
           GA AAQS+GEPA QMTLNTFHYAGVSAKNVTLGVPRL+EIINV+K+ KTPSL V+L G A
Sbjct: 296 GALAAQSLGEPAPQMTLNTFHYAGVSAKNVTLGVPRLKEIINVAKQLKTPSLTVFLIGAA 355

Query: 425 VHDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENTI 538
             DAE+AK V  +L+HTTL+ VT  T +YYDPD +NT+
Sbjct: 356 ARDAEKAKDVLCKLEHTTLKKVTANTAIYYDPDPKNTV 393

[162][TOP]
>UniRef100_B9SXC0 DNA-directed RNA polymerase n=1 Tax=Ricinus communis
            RepID=B9SXC0_RICCO
          Length = 1855

 Score =  196 bits (499), Expect = 7e-49
 Identities = 102/157 (64%), Positives = 124/157 (78%)
 Frame = +2

Query: 68   LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
            LS  AQ NATL F + +R++LASK VL ++RLTR+AF W++ EIE+RF Q+L   GEM+G
Sbjct: 1025 LSVEAQKNATLFFGILLRSTLASKRVLEDYRLTREAFDWVIGEIESRFLQSLVAPGEMIG 1084

Query: 248  ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
              AAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINV+K+ KTPSL ++L  +  
Sbjct: 1085 CVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSIFLIPECN 1144

Query: 428  HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENTI 538
               ERAK VQ  L++TTLR VT  TEV+YDPD  +TI
Sbjct: 1145 KTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTI 1181

[163][TOP]
>UniRef100_Q6GYH6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Prodontorhabditis
           wirthi RepID=Q6GYH6_9BILA
          Length = 630

 Score =  196 bits (499), Expect = 7e-49
 Identities = 100/156 (64%), Positives = 120/156 (76%)
 Frame = +2

Query: 68  LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
           +S+ AQ NATLL  + +R++L SK + S ++L  +AF WLL EIENRFQ A+A  GEMVG
Sbjct: 240 ISKQAQYNATLLTNILIRSTLCSKKMASTYKLDSEAFDWLLGEIENRFQSAIAQPGEMVG 299

Query: 248 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
           A AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK  KTPSL V+L+ D  
Sbjct: 300 ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKTLKTPSLTVFLQEDVA 359

Query: 428 HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENT 535
            D ++ K+V   L+HTTLR VT  T +YYDPD   T
Sbjct: 360 KDRDKVKEVLCRLEHTTLRKVTANTAIYYDPDPTGT 395

[164][TOP]
>UniRef100_C4QEL8 DNA-directed RNA polymerase n=1 Tax=Schistosoma mansoni
            RepID=C4QEL8_SCHMA
          Length = 1785

 Score =  196 bits (499), Expect = 7e-49
 Identities = 100/156 (64%), Positives = 120/156 (76%)
 Frame = +2

Query: 68   LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
            LS+ A  NATLL    +RASL +K V+ ++RL+ +A  W+L E+  RFQQA    GEMVG
Sbjct: 919  LSKEANANATLLLSSLIRASLCAKKVIIDYRLSYEALDWVLGEVRARFQQAHIHPGEMVG 978

Query: 248  ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
            A AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSKR KTPS+ ++L G A 
Sbjct: 979  ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKRPKTPSMTIFLTGQAA 1038

Query: 428  HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENT 535
             DAER K V A L+HTTLR + + T +YYDPD +NT
Sbjct: 1039 RDAERTKDVVARLEHTTLRKLVNSTYIYYDPDPQNT 1074

[165][TOP]
>UniRef100_UPI0000E12351 Os05g0151000 n=1 Tax=Oryza sativa Japonica Group RepID=UPI0000E12351
          Length = 2085

 Score =  196 bits (497), Expect = 1e-48
 Identities = 100/158 (63%), Positives = 123/158 (77%)
 Frame = +2

Query: 65   ELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMV 244
            ++S  AQ NATL F + +R++ ASK VL E+RLT++AF W++ EIE+RF Q+L   GEM+
Sbjct: 1025 DISIEAQKNATLFFNILLRSTFASKRVLKEYRLTKEAFEWVIGEIESRFLQSLVAPGEMI 1084

Query: 245  GATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDA 424
            G  AAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINV+K  KTPSL V+L+ + 
Sbjct: 1085 GCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKNIKTPSLSVHLKPEV 1144

Query: 425  VHDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENTI 538
                E AK VQ  L++TTLR VTH TE++YDPD   TI
Sbjct: 1145 NKKKELAKNVQCALEYTTLRSVTHATEIWYDPDPLGTI 1182

[166][TOP]
>UniRef100_Q5WMZ9 DNA-directed RNA polymerase n=1 Tax=Oryza sativa Japonica Group
            RepID=Q5WMZ9_ORYSJ
          Length = 1741

 Score =  196 bits (497), Expect = 1e-48
 Identities = 100/158 (63%), Positives = 123/158 (77%)
 Frame = +2

Query: 65   ELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMV 244
            ++S  AQ NATL F + +R++ ASK VL E+RLT++AF W++ EIE+RF Q+L   GEM+
Sbjct: 972  DISIEAQKNATLFFNILLRSTFASKRVLKEYRLTKEAFEWVIGEIESRFLQSLVAPGEMI 1031

Query: 245  GATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDA 424
            G  AAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINV+K  KTPSL V+L+ + 
Sbjct: 1032 GCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKNIKTPSLSVHLKPEV 1091

Query: 425  VHDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENTI 538
                E AK VQ  L++TTLR VTH TE++YDPD   TI
Sbjct: 1092 NKKKELAKNVQCALEYTTLRSVTHATEIWYDPDPLGTI 1129

[167][TOP]
>UniRef100_Q0DKN9 DNA-directed RNA polymerase n=1 Tax=Oryza sativa Japonica Group
            RepID=Q0DKN9_ORYSJ
          Length = 1834

 Score =  196 bits (497), Expect = 1e-48
 Identities = 100/158 (63%), Positives = 123/158 (77%)
 Frame = +2

Query: 65   ELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMV 244
            ++S  AQ NATL F + +R++ ASK VL E+RLT++AF W++ EIE+RF Q+L   GEM+
Sbjct: 1025 DISIEAQKNATLFFNILLRSTFASKRVLKEYRLTKEAFEWVIGEIESRFLQSLVAPGEMI 1084

Query: 245  GATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDA 424
            G  AAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINV+K  KTPSL V+L+ + 
Sbjct: 1085 GCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKNIKTPSLSVHLKPEV 1144

Query: 425  VHDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENTI 538
                E AK VQ  L++TTLR VTH TE++YDPD   TI
Sbjct: 1145 NKKKELAKNVQCALEYTTLRSVTHATEIWYDPDPLGTI 1182

[168][TOP]
>UniRef100_Q010D7 DNA-directed RNA polymerase n=1 Tax=Ostreococcus tauri
            RepID=Q010D7_OSTTA
          Length = 1673

 Score =  196 bits (497), Expect = 1e-48
 Identities = 98/157 (62%), Positives = 123/157 (78%)
 Frame = +2

Query: 68   LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
            LS  AQ N TLLF  HVRA+LA+K VL +H+LTR  F W++ E+E+RF+ ALAP G+ +G
Sbjct: 1022 LSIEAQRNGTLLFFAHVRANLAAKRVLKDHKLTRAGFDWVIGEVESRFKMALAPPGDGIG 1081

Query: 248  ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
              AAQSIGEPATQMTLNTFH+AGVSAKNVTLGVPRL+EIIN++K+ KTPSL V L+ +  
Sbjct: 1082 VVAAQSIGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINIAKQIKTPSLTVALKPEFA 1141

Query: 428  HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENTI 538
             D  +AK VQA L++TTL  V  +TEV+YDPD  +T+
Sbjct: 1142 SDRTKAKDVQASLEYTTLHSVAAVTEVHYDPDPTDTV 1178

[169][TOP]
>UniRef100_UPI0000E48673 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
            (RPB1) isoform 1 n=1 Tax=Strongylocentrotus purpuratus
            RepID=UPI0000E48673
          Length = 1880

 Score =  195 bits (496), Expect = 2e-48
 Identities = 98/157 (62%), Positives = 121/157 (77%)
 Frame = +2

Query: 68   LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
            +S  AQ NAT L    +R++L+S  V  EH+L+ ++F WLL EIE RF Q+LA AGEMVG
Sbjct: 1023 ISRQAQENATYLMNCLIRSTLSSTRVAQEHKLSPESFEWLLGEIETRFNQSLAMAGEMVG 1082

Query: 248  ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
            A AAQS+GEPATQMTLNTFH+AGVSAKNVTLGVPRL+EIIN+SK+ +TPSL  +L G A 
Sbjct: 1083 ALAAQSLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINISKKPRTPSLTCFLLGKAA 1142

Query: 428  HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENTI 538
             DAERAK +   L+HTTLR VT  T +YYDP+ + T+
Sbjct: 1143 RDAERAKDILCRLEHTTLRKVTANTAIYYDPEPQGTV 1179

[170][TOP]
>UniRef100_UPI0000E48672 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
            (RPB1) isoform 2 n=1 Tax=Strongylocentrotus purpuratus
            RepID=UPI0000E48672
          Length = 1913

 Score =  195 bits (496), Expect = 2e-48
 Identities = 98/157 (62%), Positives = 121/157 (77%)
 Frame = +2

Query: 68   LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
            +S  AQ NAT L    +R++L+S  V  EH+L+ ++F WLL EIE RF Q+LA AGEMVG
Sbjct: 1029 ISRQAQENATYLMNCLIRSTLSSTRVAQEHKLSPESFEWLLGEIETRFNQSLAMAGEMVG 1088

Query: 248  ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
            A AAQS+GEPATQMTLNTFH+AGVSAKNVTLGVPRL+EIIN+SK+ +TPSL  +L G A 
Sbjct: 1089 ALAAQSLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINISKKPRTPSLTCFLLGKAA 1148

Query: 428  HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENTI 538
             DAERAK +   L+HTTLR VT  T +YYDP+ + T+
Sbjct: 1149 RDAERAKDILCRLEHTTLRKVTANTAIYYDPEPQGTV 1185

[171][TOP]
>UniRef100_UPI0000E48671 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
            (RPB1) isoform 3 n=1 Tax=Strongylocentrotus purpuratus
            RepID=UPI0000E48671
          Length = 1921

 Score =  195 bits (496), Expect = 2e-48
 Identities = 98/157 (62%), Positives = 121/157 (77%)
 Frame = +2

Query: 68   LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
            +S  AQ NAT L    +R++L+S  V  EH+L+ ++F WLL EIE RF Q+LA AGEMVG
Sbjct: 1029 ISRQAQENATYLMNCLIRSTLSSTRVAQEHKLSPESFEWLLGEIETRFNQSLAMAGEMVG 1088

Query: 248  ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
            A AAQS+GEPATQMTLNTFH+AGVSAKNVTLGVPRL+EIIN+SK+ +TPSL  +L G A 
Sbjct: 1089 ALAAQSLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINISKKPRTPSLTCFLLGKAA 1148

Query: 428  HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENTI 538
             DAERAK +   L+HTTLR VT  T +YYDP+ + T+
Sbjct: 1149 RDAERAKDILCRLEHTTLRKVTANTAIYYDPEPQGTV 1185

[172][TOP]
>UniRef100_B4YVX9 RNA polymerase II large subunit (Fragment) n=1 Tax=Meloidogyne
           fallax RepID=B4YVX9_9BILA
          Length = 219

 Score =  195 bits (496), Expect = 2e-48
 Identities = 98/156 (62%), Positives = 121/156 (77%)
 Frame = +2

Query: 68  LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
           +S+ AQ NAT+L  + +R++L S  +  +H+L  +AF WLL E+E RF  A+   GEMVG
Sbjct: 2   ISKQAQENATILMNILLRSALCSLKMAKQHKLNEEAFEWLLGEVETRFCTAVVQPGEMVG 61

Query: 248 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
           A AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ +TPSL V+L+G A 
Sbjct: 62  ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKKPRTPSLTVFLKGLAA 121

Query: 428 HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENT 535
            DAE+AK V   L+H TLR VT  T +YYDPDL+NT
Sbjct: 122 KDAEKAKDVLCRLEHCTLRKVTANTAIYYDPDLKNT 157

[173][TOP]
>UniRef100_A4S3M0 DNA-directed RNA polymerase n=1 Tax=Ostreococcus lucimarinus CCE9901
            RepID=A4S3M0_OSTLU
          Length = 1646

 Score =  195 bits (495), Expect = 2e-48
 Identities = 98/157 (62%), Positives = 121/157 (77%)
 Frame = +2

Query: 68   LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
            LS  AQ N T+LF  HVRA+LA+K VL EH+LTR  F W++ EIE+RF+ ALAP G+ +G
Sbjct: 1002 LSVEAQRNGTMLFFAHVRANLAAKRVLKEHKLTRAGFDWVIGEIESRFKMALAPPGDGIG 1061

Query: 248  ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
              AAQSIGEPATQMTLNTFH+AGVSAKNVTLGVPRL+EIIN++K  KTPSL + L+ +  
Sbjct: 1062 TVAAQSIGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINIAKSIKTPSLTIALKPELA 1121

Query: 428  HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENTI 538
             D  RAK  QA L++TTL  V  +TEV+YDPD  +T+
Sbjct: 1122 GDRTRAKDCQASLEYTTLHSVAAVTEVHYDPDPTDTV 1158

[174][TOP]
>UniRef100_B4YVW5 RNA polymerase II large subunit (Fragment) n=1 Tax=Meloidogyne
           mayaguensis RepID=B4YVW5_MELMY
          Length = 219

 Score =  195 bits (495), Expect = 2e-48
 Identities = 100/156 (64%), Positives = 119/156 (76%)
 Frame = +2

Query: 68  LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
           +S+ AQ NAT+L  + +R+ L S  +  +H+L  +AF WLL EIE RF  A+A  GEMVG
Sbjct: 2   ISKQAQENATILMNILLRSMLCSLKMAKQHKLNEEAFEWLLGEIETRFCTAIAQPGEMVG 61

Query: 248 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
           A AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ KTPSL V+L+G A 
Sbjct: 62  ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKKPKTPSLTVFLKGLAA 121

Query: 428 HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENT 535
            DAE+AK V   L+H TLR VT  T +YYDPD  NT
Sbjct: 122 KDAEKAKDVLCRLEHCTLRKVTANTAIYYDPDPRNT 157

[175][TOP]
>UniRef100_B4YVW9 RNA polymerase II large subunit (Fragment) n=1 Tax=Meloidogyne
           hapla RepID=B4YVW9_MELHA
          Length = 219

 Score =  194 bits (494), Expect = 3e-48
 Identities = 100/156 (64%), Positives = 118/156 (75%)
 Frame = +2

Query: 68  LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
           +S+ AQ NAT+L  + +R+ L S  +  +H+L  +AF WLL EIE RF  A+   GEMVG
Sbjct: 2   ISKQAQENATILMNILLRSMLCSLKMAKQHKLNEEAFEWLLGEIETRFCTAIVQPGEMVG 61

Query: 248 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
           A AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ KTPSL V+L+G A 
Sbjct: 62  ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKKPKTPSLTVFLKGLAA 121

Query: 428 HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENT 535
            DAERAK V   L+H TLR VT  T +YYDPD  NT
Sbjct: 122 KDAERAKDVLCRLEHCTLRKVTANTAIYYDPDPRNT 157

[176][TOP]
>UniRef100_Q25151 DNA-directed RNA polymerase (Fragment) n=1 Tax=Helobdella stagnalis
            RepID=Q25151_9ANNE
          Length = 1337

 Score =  194 bits (493), Expect = 3e-48
 Identities = 100/157 (63%), Positives = 120/157 (76%)
 Frame = +2

Query: 68   LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
            LS+TA  NATLL  + VR++L SK V+ E  L+ +AF WL+ EIE++F QA    GEMVG
Sbjct: 936  LSKTANTNATLLMNILVRSTLCSKRVIEEFHLSTEAFEWLMGEIESKFIQARVQPGEMVG 995

Query: 248  ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
            A AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ + PSL V L G   
Sbjct: 996  ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKKPRAPSLTVILIGQPA 1055

Query: 428  HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENTI 538
             DAE+AK V  +L+HTTLR VT  T +YYDPD  +T+
Sbjct: 1056 RDAEKAKDVLCQLEHTTLRKVTENTAIYYDPDPMHTL 1092

[177][TOP]
>UniRef100_B4YVX3 RNA polymerase II large subunit (Fragment) n=1 Tax=Meloidogyne
           hapla RepID=B4YVX3_MELHA
          Length = 219

 Score =  194 bits (493), Expect = 3e-48
 Identities = 100/156 (64%), Positives = 118/156 (75%)
 Frame = +2

Query: 68  LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
           LS+ AQ NAT+L  + +R+ L S  +  +H+L  +AF WLL EIE RF  A+   GEMVG
Sbjct: 2   LSKQAQENATILMNILLRSMLCSLKMAKQHKLNEEAFEWLLGEIETRFCTAIVQPGEMVG 61

Query: 248 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
           A AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ KTPSL V+L+G A 
Sbjct: 62  ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKKPKTPSLTVFLKGLAA 121

Query: 428 HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENT 535
            DAE+AK V   L+H TLR VT  T +YYDPD  NT
Sbjct: 122 KDAEKAKDVLCRLEHCTLRKVTANTAIYYDPDPRNT 157

[178][TOP]
>UniRef100_A8BDP1 RNA polymerase II largest subunit (Fragment) n=1 Tax=Paragordius
           varius RepID=A8BDP1_PARVA
          Length = 467

 Score =  194 bits (493), Expect = 3e-48
 Identities = 97/162 (59%), Positives = 123/162 (75%)
 Frame = +2

Query: 53  EALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPA 232
           + +  +S+ AQL+AT L    +R++L ++ V  E +L+  AF W+L EIE+RF+ +L   
Sbjct: 164 KGVDRISQRAQLDATFLMNALIRSTLCTRRVAEEFKLSSDAFDWVLGEIESRFRSSLVDP 223

Query: 233 GEMVGATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYL 412
           GEMVG  +AQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSKR KTPSL V+L
Sbjct: 224 GEMVGPLSAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKRPKTPSLTVFL 283

Query: 413 RGDAVHDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENTI 538
           +G A  DAE+AK V   L+HTTL+ VT  T +YYDPD  NT+
Sbjct: 284 KGAAARDAEKAKDVLCRLEHTTLKKVTANTAIYYDPDPVNTV 325

[179][TOP]
>UniRef100_B4YVU6 RNA polymerase II large subunit (Fragment) n=2 Tax=Meloidogyne
           incognita group RepID=B4YVU6_MELAR
          Length = 219

 Score =  194 bits (492), Expect = 4e-48
 Identities = 99/156 (63%), Positives = 118/156 (75%)
 Frame = +2

Query: 68  LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
           +S+ AQ NAT+L  + +R+ L S  +  +H+L  +AF WLL EIE RF  A+   GEMVG
Sbjct: 2   ISKQAQENATILMNILLRSMLCSLKMAKQHKLNEEAFEWLLGEIETRFCTAIVQPGEMVG 61

Query: 248 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
           A AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ KTPSL V+L+G A 
Sbjct: 62  ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKKPKTPSLTVFLKGLAA 121

Query: 428 HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENT 535
            DAE+AK V   L+H TLR VT  T +YYDPD  NT
Sbjct: 122 KDAEKAKDVLCRLEHCTLRRVTANTAIYYDPDPRNT 157

[180][TOP]
>UniRef100_B4YVW7 RNA polymerase II large subunit (Fragment) n=1 Tax=Meloidogyne
           hapla RepID=B4YVW7_MELHA
          Length = 219

 Score =  193 bits (491), Expect = 6e-48
 Identities = 99/156 (63%), Positives = 118/156 (75%)
 Frame = +2

Query: 68  LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
           +S+ AQ NAT+L  + +R+ L S  +  +H+L  +AF WLL EIE RF  A+   GEMVG
Sbjct: 2   ISKQAQENATILMNILLRSMLCSLKMAKQHKLNEEAFEWLLGEIETRFCTAIVQPGEMVG 61

Query: 248 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
           A AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ KTPSL V+L+G A 
Sbjct: 62  ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKKPKTPSLTVFLKGLAA 121

Query: 428 HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENT 535
            DAE+AK V   L+H TLR VT  T +YYDPD  NT
Sbjct: 122 KDAEKAKDVLCRLEHCTLRKVTANTAIYYDPDPRNT 157

[181][TOP]
>UniRef100_B4YVU3 RNA polymerase II large subunit (Fragment) n=5 Tax=Meloidogyne
           RepID=B4YVU3_MELAR
          Length = 219

 Score =  193 bits (491), Expect = 6e-48
 Identities = 99/156 (63%), Positives = 118/156 (75%)
 Frame = +2

Query: 68  LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
           +S+ AQ NAT+L  + +R+ L S  +  +H+L  +AF WLL EIE RF  A+   GEMVG
Sbjct: 2   ISKQAQENATILMNILLRSMLCSLKMAKQHKLNEEAFEWLLGEIETRFCTAIVQPGEMVG 61

Query: 248 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
           A AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ KTPSL V+L+G A 
Sbjct: 62  ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKKPKTPSLTVFLKGLAA 121

Query: 428 HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENT 535
            DAE+AK V   L+H TLR VT  T +YYDPD  NT
Sbjct: 122 KDAEKAKDVLCRLEHCTLRKVTANTAIYYDPDPRNT 157

[182][TOP]
>UniRef100_A9U396 DNA-directed RNA polymerase n=1 Tax=Physcomitrella patens subsp.
            patens RepID=A9U396_PHYPA
          Length = 1742

 Score =  192 bits (489), Expect = 1e-47
 Identities = 97/158 (61%), Positives = 123/158 (77%)
 Frame = +2

Query: 65   ELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMV 244
            ++S  AQ NATL F   +R++LASK VL ++RLTR+AF W++ E+E RF  +L   GEM+
Sbjct: 1027 QISMEAQRNATLFFGCLLRSTLASKRVLKDYRLTREAFEWVIGEVETRFLMSLVAPGEMI 1086

Query: 245  GATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDA 424
            G  AAQSIGEPATQMTLNTFH+AGVSAKNVTLGVPRL+EIINV+K+ KTPSL VYL+   
Sbjct: 1087 GCVAAQSIGEPATQMTLNTFHFAGVSAKNVTLGVPRLREIINVAKKIKTPSLTVYLKPGV 1146

Query: 425  VHDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENTI 538
              + ERAK VQ  L++TTLR VT  TE++YDP+  +T+
Sbjct: 1147 NKEKERAKNVQCALEYTTLRSVTQATEIWYDPEPMSTL 1184

[183][TOP]
>UniRef100_B4YVX6 RNA polymerase II large subunit (Fragment) n=1 Tax=Meloidogyne
           fallax RepID=B4YVX6_9BILA
          Length = 219

 Score =  192 bits (489), Expect = 1e-47
 Identities = 97/156 (62%), Positives = 120/156 (76%)
 Frame = +2

Query: 68  LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
           +S+ AQ NAT+L  + +R++L S  +  +H+L  +AF WLL E+E RF  A+   GEMVG
Sbjct: 2   ISKQAQENATILMNILLRSALCSLKMAKQHKLNEEAFEWLLGEVETRFCTAVVQPGEMVG 61

Query: 248 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
           A AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ +TPSL V+L+G A 
Sbjct: 62  ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKKPRTPSLTVFLKGLAA 121

Query: 428 HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENT 535
            DAE+AK V   L+H TLR VT  T +YYDPD +NT
Sbjct: 122 KDAEKAKDVLCRLEHCTLRKVTANTAIYYDPDPKNT 157

[184][TOP]
>UniRef100_B4YVX4 RNA polymerase II large subunit (Fragment) n=1 Tax=Meloidogyne
           chitwoodi RepID=B4YVX4_MELCH
          Length = 219

 Score =  192 bits (489), Expect = 1e-47
 Identities = 97/156 (62%), Positives = 120/156 (76%)
 Frame = +2

Query: 68  LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
           +S+ AQ NAT+L  + +R++L S  +  +H+L  +AF WLL E+E RF  A+   GEMVG
Sbjct: 2   ISKQAQENATILMNILLRSALCSLKMAKQHKLNEEAFEWLLGEVETRFCTAVVQPGEMVG 61

Query: 248 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
           A AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ +TPSL V+L+G A 
Sbjct: 62  ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKKPRTPSLTVFLKGLAA 121

Query: 428 HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENT 535
            DAE+AK V   L+H TLR VT  T +YYDPD +NT
Sbjct: 122 KDAEKAKDVLCRLEHCTLRKVTANTAIYYDPDPKNT 157

[185][TOP]
>UniRef100_B4YVX2 RNA polymerase II large subunit (Fragment) n=1 Tax=Meloidogyne
           hapla RepID=B4YVX2_MELHA
          Length = 219

 Score =  192 bits (489), Expect = 1e-47
 Identities = 99/156 (63%), Positives = 118/156 (75%)
 Frame = +2

Query: 68  LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
           +S+ AQ NAT+L  + +R+ L S  +  +H+L  +AF WLL EIE RF  A+   GEMVG
Sbjct: 2   ISKQAQENATILMNILLRSMLCSLKMAKQHKLNEEAFEWLLGEIETRFCTAIVQPGEMVG 61

Query: 248 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
           A AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ KTPSL V+L+G A 
Sbjct: 62  ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKKPKTPSLTVFLKGLAA 121

Query: 428 HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENT 535
            DAE+AK V   L+H TLR VT  T +YYDPD  NT
Sbjct: 122 KDAEKAKDVLCRLEHCTLRKVTANTAIYYDPDPGNT 157

[186][TOP]
>UniRef100_B4YVW2 RNA polymerase II large subunit (Fragment) n=1 Tax=Meloidogyne
           mayaguensis RepID=B4YVW2_MELMY
          Length = 219

 Score =  192 bits (489), Expect = 1e-47
 Identities = 99/156 (63%), Positives = 117/156 (75%)
 Frame = +2

Query: 68  LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
           +S+ AQ NAT+L  + +R+ L S  +  +H+L  +AF WLL EIE RF  A+   GEMVG
Sbjct: 2   ISKQAQENATILMNILLRSMLCSLKMAKQHKLNEEAFEWLLGEIETRFCTAIVQPGEMVG 61

Query: 248 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
           A AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ KTPSL V+L+G A 
Sbjct: 62  ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKKPKTPSLTVFLKGLAA 121

Query: 428 HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENT 535
            DAE AK V   L+H TLR VT  T +YYDPD  NT
Sbjct: 122 KDAEEAKDVLCRLEHCTLRKVTANTAIYYDPDPRNT 157

[187][TOP]
>UniRef100_A9TK89 DNA-directed RNA polymerase n=1 Tax=Physcomitrella patens subsp.
            patens RepID=A9TK89_PHYPA
          Length = 1646

 Score =  192 bits (488), Expect = 1e-47
 Identities = 97/158 (61%), Positives = 124/158 (78%)
 Frame = +2

Query: 65   ELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMV 244
            ++S  AQ NATL F   +R++LASK VL ++RLTR+AF W++ EIE RF  +L   GEM+
Sbjct: 1012 QISMEAQRNATLFFGCLLRSTLASKRVLKDYRLTREAFDWVIGEIETRFLMSLVAPGEMI 1071

Query: 245  GATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDA 424
            G  AAQSIGEPATQMTLNTFH+AGVSAKNVTLGVPRL+EIINV+K+TKTPSL V+L+   
Sbjct: 1072 GCVAAQSIGEPATQMTLNTFHFAGVSAKNVTLGVPRLREIINVAKKTKTPSLTVFLKPGI 1131

Query: 425  VHDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENTI 538
              + E+AK VQ  L++TTLR VT  TE++YDP+  +T+
Sbjct: 1132 NKEKEKAKNVQCALEYTTLRSVTQATEIWYDPEPMSTL 1169

[188][TOP]
>UniRef100_O00820 DNA-directed RNA polymerase (Fragment) n=1 Tax=Acanthamoeba
            castellanii RepID=O00820_ACACA
          Length = 1569

 Score =  192 bits (488), Expect = 1e-47
 Identities = 98/158 (62%), Positives = 121/158 (76%)
 Frame = +2

Query: 65   ELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMV 244
            ++S+ AQ NA LLF + +R +LAS+ VL E+RL + ++ WLL EI +RF ++L   GEM+
Sbjct: 935  DISKEAQANAILLFSILLRFTLASRRVLQEYRLDQISWDWLLGEITDRFYKSLCDPGEMI 994

Query: 245  GATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDA 424
            GA AAQSIGEPATQMTLNTFH+AGVSAKNVTLGVPRL+E+IN++K  KTPSL VYL    
Sbjct: 995  GALAAQSIGEPATQMTLNTFHFAGVSAKNVTLGVPRLKELINIAKTIKTPSLTVYLEPHC 1054

Query: 425  VHDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENTI 538
              D E AK VQ  LQHTTLR VT  TE++YDPD  NT+
Sbjct: 1055 SRDHEAAKNVQCSLQHTTLRDVTAATEIFYDPDPVNTV 1092

[189][TOP]
>UniRef100_B4YVU7 RNA polymerase II large subunit (Fragment) n=1 Tax=Meloidogyne
           javanica RepID=B4YVU7_MELJA
          Length = 219

 Score =  192 bits (488), Expect = 1e-47
 Identities = 98/156 (62%), Positives = 117/156 (75%)
 Frame = +2

Query: 68  LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
           +S+  Q NAT+L  + +R+ L S  +  +H+L  +AF WLL EIE RF  A+   GEMVG
Sbjct: 2   ISKQTQENATILMNILLRSMLCSLKMAKQHKLNEEAFEWLLGEIETRFCTAIVQPGEMVG 61

Query: 248 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
           A AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ KTPSL V+L+G A 
Sbjct: 62  ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKKPKTPSLTVFLKGLAA 121

Query: 428 HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENT 535
            DAE+AK V   L+H TLR VT  T +YYDPD  NT
Sbjct: 122 KDAEKAKDVLCRLEHCTLRRVTANTAIYYDPDPRNT 157

[190][TOP]
>UniRef100_UPI000151A8B3 hypothetical protein PGUG_01105 n=1 Tax=Pichia guilliermondii ATCC
           6260 RepID=UPI000151A8B3
          Length = 1018

 Score =  192 bits (487), Expect = 2e-47
 Identities = 96/157 (61%), Positives = 122/157 (77%)
 Frame = +2

Query: 68  LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
           L + +Q NATLLFQ  VR+ LA++ V+ E RL R +F W + EIE +FQ++L   GEMVG
Sbjct: 273 LVKESQENATLLFQCLVRSRLATRRVIEEFRLNRMSFEWAMGEIETQFQKSLVHPGEMVG 332

Query: 248 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
             AAQSIGEPATQMTLNTFHYAGVS+KNVTLGVPRL+EI+NV+K  KTP+L VYL  D  
Sbjct: 333 VIAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVAKNIKTPALTVYLEKDIA 392

Query: 428 HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENTI 538
            D E+AK VQ+ ++HTTL++VT  TE++YDPD  +T+
Sbjct: 393 ADIEKAKVVQSAIEHTTLKNVTASTEIFYDPDPRSTV 429

[191][TOP]
>UniRef100_B4YVX0 RNA polymerase II large subunit (Fragment) n=1 Tax=Meloidogyne
           hapla RepID=B4YVX0_MELHA
          Length = 219

 Score =  192 bits (487), Expect = 2e-47
 Identities = 98/156 (62%), Positives = 117/156 (75%)
 Frame = +2

Query: 68  LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
           +S+ AQ NAT+L  + +R+ L S  +  +H+L  +AF WLL EIE RF  A+   GEMVG
Sbjct: 2   ISKQAQENATILMNILLRSMLCSLKMAKQHKLNEEAFEWLLGEIETRFCTAIVQPGEMVG 61

Query: 248 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
           A AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ KTPSL  +L+G A 
Sbjct: 62  ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKKPKTPSLTAFLKGLAA 121

Query: 428 HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENT 535
            DAE+AK V   L+H TLR VT  T +YYDPD  NT
Sbjct: 122 KDAEKAKDVLCRLEHCTLRKVTANTAIYYDPDPRNT 157

[192][TOP]
>UniRef100_B4YVU9 RNA polymerase II large subunit (Fragment) n=1 Tax=Meloidogyne
           javanica RepID=B4YVU9_MELJA
          Length = 219

 Score =  192 bits (487), Expect = 2e-47
 Identities = 98/156 (62%), Positives = 117/156 (75%)
 Frame = +2

Query: 68  LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
           +S+ AQ NAT+L  + +R+ L    +  +H+L  +AF WLL EIE RF  A+   GEMVG
Sbjct: 2   ISKQAQENATILMNILLRSMLCPLKMAKQHKLNEEAFEWLLGEIETRFCTAIVQPGEMVG 61

Query: 248 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
           A AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ KTPSL V+L+G A 
Sbjct: 62  ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKKPKTPSLTVFLKGLAA 121

Query: 428 HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENT 535
            DAE+AK V   L+H TLR VT  T +YYDPD  NT
Sbjct: 122 KDAEKAKDVLCRLEHCTLRRVTANTAIYYDPDPRNT 157

[193][TOP]
>UniRef100_A5DCV3 DNA-directed RNA polymerase II subunit RPB1 (Fragments) n=1
            Tax=Pichia guilliermondii RepID=RPB1_PICGU
          Length = 1579

 Score =  192 bits (487), Expect = 2e-47
 Identities = 96/157 (61%), Positives = 122/157 (77%)
 Frame = +2

Query: 68   LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
            L + +Q NATLLFQ  VR+ LA++ V+ E RL R +F W + EIE +FQ++L   GEMVG
Sbjct: 839  LVKESQENATLLFQCLVRSRLATRRVIEEFRLNRMSFEWAMGEIETQFQKSLVHPGEMVG 898

Query: 248  ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
              AAQSIGEPATQMTLNTFHYAGVS+KNVTLGVPRL+EI+NV+K  KTP+L VYL  D  
Sbjct: 899  VIAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVAKNIKTPALTVYLEKDIA 958

Query: 428  HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENTI 538
             D E+AK VQ+ ++HTTL++VT  TE++YDPD  +T+
Sbjct: 959  ADIEKAKVVQSAIEHTTLKNVTASTEIFYDPDPRSTV 995

[194][TOP]
>UniRef100_UPI0000F24379 DNA-directed RNA polymerase II largest subunit (RNA polymerase II
            subunit 1) (B220) n=1 Tax=Pichia stipitis CBS 6054
            RepID=UPI0000F24379
          Length = 1739

 Score =  191 bits (486), Expect = 2e-47
 Identities = 96/158 (60%), Positives = 122/158 (77%)
 Frame = +2

Query: 65   ELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMV 244
            EL + AQ NATLLFQ  VR+ LAS+ V+ E +L R +F W++ EIE +FQ+++   GEMV
Sbjct: 1006 ELVKEAQANATLLFQCLVRSRLASRRVIEEFKLNRSSFEWVVGEIETQFQKSIVHPGEMV 1065

Query: 245  GATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDA 424
            G  AAQSIGEPATQMTLNTFHYAGVS+KNVTLGVPRL+EI+NV+K  KTP+L VYL    
Sbjct: 1066 GVIAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVAKNIKTPALTVYLDPAL 1125

Query: 425  VHDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENTI 538
              D E+AK VQ+ ++HT+L++VT  TE+YYDPD   T+
Sbjct: 1126 SDDIEKAKVVQSAIEHTSLKNVTSSTEIYYDPDPRTTV 1163

[195][TOP]
>UniRef100_B4YVV3 RNA polymerase II large subunit (Fragment) n=1 Tax=Meloidogyne
           javanica RepID=B4YVV3_MELJA
          Length = 219

 Score =  191 bits (486), Expect = 2e-47
 Identities = 98/156 (62%), Positives = 117/156 (75%)
 Frame = +2

Query: 68  LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
           +S+ AQ NAT+L  + +R+ L S  +  +H+L  +AF WLL EIE RF  A+   GEMVG
Sbjct: 2   ISKQAQENATILMNILLRSMLCSLKMAKQHKLNEEAFEWLLGEIETRFCTAIVQPGEMVG 61

Query: 248 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
           A AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPR +EIINVSK+ KTPSL V+L+G A 
Sbjct: 62  ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRRKEIINVSKKPKTPSLTVFLKGLAA 121

Query: 428 HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENT 535
            DAE+AK V   L+H TLR VT  T +YYDPD  NT
Sbjct: 122 KDAEKAKDVLCRLEHCTLRRVTANTAIYYDPDPRNT 157

[196][TOP]
>UniRef100_A3GID7 DNA-directed RNA polymerase n=1 Tax=Pichia stipitis
            RepID=A3GID7_PICST
          Length = 1739

 Score =  191 bits (486), Expect = 2e-47
 Identities = 96/158 (60%), Positives = 122/158 (77%)
 Frame = +2

Query: 65   ELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMV 244
            EL + AQ NATLLFQ  VR+ LAS+ V+ E +L R +F W++ EIE +FQ+++   GEMV
Sbjct: 1006 ELVKEAQANATLLFQCLVRSRLASRRVIEEFKLNRSSFEWVVGEIETQFQKSIVHPGEMV 1065

Query: 245  GATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDA 424
            G  AAQSIGEPATQMTLNTFHYAGVS+KNVTLGVPRL+EI+NV+K  KTP+L VYL    
Sbjct: 1066 GVIAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVAKNIKTPALTVYLDPAL 1125

Query: 425  VHDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENTI 538
              D E+AK VQ+ ++HT+L++VT  TE+YYDPD   T+
Sbjct: 1126 SDDIEKAKVVQSAIEHTSLKNVTSSTEIYYDPDPRTTV 1163

[197][TOP]
>UniRef100_B4YVX5 RNA polymerase II large subunit (Fragment) n=1 Tax=Meloidogyne
           chitwoodi RepID=B4YVX5_MELCH
          Length = 219

 Score =  191 bits (485), Expect = 3e-47
 Identities = 96/156 (61%), Positives = 119/156 (76%)
 Frame = +2

Query: 68  LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
           + + AQ NAT+L  + +R++L S  +  +H+L  +AF WLL E+E RF  A+   GEMVG
Sbjct: 2   IGKQAQENATILMNILLRSALCSLKMAKQHKLNEEAFEWLLGEVETRFCTAVVQPGEMVG 61

Query: 248 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
           A AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ +TPSL V+L+G A 
Sbjct: 62  ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKKPRTPSLTVFLKGLAA 121

Query: 428 HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENT 535
            DAE+AK V   L+H TLR VT  T +YYDPD +NT
Sbjct: 122 KDAEKAKDVLCRLEHCTLRKVTANTAIYYDPDPKNT 157

[198][TOP]
>UniRef100_B4YVW8 RNA polymerase II large subunit (Fragment) n=1 Tax=Meloidogyne
           hapla RepID=B4YVW8_MELHA
          Length = 219

 Score =  191 bits (485), Expect = 3e-47
 Identities = 98/156 (62%), Positives = 117/156 (75%)
 Frame = +2

Query: 68  LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
           +S+ AQ NAT+L  + +R+ L S  +  +H+L  +AF WLL EIE RF  A+   GEMVG
Sbjct: 2   ISKQAQENATILMNILLRSMLCSLKMAKQHKLNEEAFEWLLGEIETRFCTAIVQPGEMVG 61

Query: 248 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
           A AAQS+GEPATQMTLNTFHYA VSAKNVTLGVPRL+EIINVSK+ KTPSL V+L+G A 
Sbjct: 62  ALAAQSLGEPATQMTLNTFHYASVSAKNVTLGVPRLKEIINVSKKPKTPSLTVFLKGLAA 121

Query: 428 HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENT 535
            DAE+AK V   L+H TLR VT  T +YYDPD  NT
Sbjct: 122 KDAEKAKDVLCRLEHCTLRKVTANTAIYYDPDPRNT 157

[199][TOP]
>UniRef100_B4YVV9 RNA polymerase II large subunit (Fragment) n=1 Tax=Meloidogyne
           incognita RepID=B4YVV9_MELIC
          Length = 219

 Score =  191 bits (485), Expect = 3e-47
 Identities = 98/156 (62%), Positives = 117/156 (75%)
 Frame = +2

Query: 68  LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
           +S+ AQ NAT+L  + +R+ L S  +  +H+L  +AF WLL EIE R   A+   GEMVG
Sbjct: 2   ISKQAQENATILMNILLRSMLCSLKMAKQHKLNEEAFEWLLGEIETRLCTAIVQPGEMVG 61

Query: 248 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
           A AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ KTPSL V+L+G A 
Sbjct: 62  ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKKPKTPSLTVFLKGLAA 121

Query: 428 HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENT 535
            DAE+AK V   L+H TLR VT  T +YYDPD  NT
Sbjct: 122 KDAEKAKDVLCRLEHCTLRKVTANTAIYYDPDPRNT 157

[200][TOP]
>UniRef100_A9QMH2 RNA polymerase 2 (Fragment) n=1 Tax=Brevibucca saprophaga
           RepID=A9QMH2_9BILA
          Length = 386

 Score =  191 bits (485), Expect = 3e-47
 Identities = 96/140 (68%), Positives = 112/140 (80%)
 Frame = +2

Query: 116 VRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTL 295
           +R++L SK V  +H+L  +AF WLL EIE +F QA+A  GEMVGA AAQS+GEPATQMTL
Sbjct: 4   LRSTLCSKKVAEKHKLNTEAFEWLLGEIETKFNQAIAQPGEMVGALAAQSLGEPATQMTL 63

Query: 296 NTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAERAKQVQAELQHT 475
           NTFHYAGVSAKNVTLGVPRL+EIINVSK  KTPSL V+L G AV DAE+AK V  +L+HT
Sbjct: 64  NTFHYAGVSAKNVTLGVPRLKEIINVSKNPKTPSLTVFLTGGAVKDAEKAKDVLCKLEHT 123

Query: 476 TLRHVTHMTEVYYDPDLENT 535
           TLR VT  T +YYD D+ NT
Sbjct: 124 TLRKVTSNTAIYYDADIRNT 143

[201][TOP]
>UniRef100_UPI00003BD271 hypothetical protein DEHA0A14036g n=1 Tax=Debaryomyces hansenii
            CBS767 RepID=UPI00003BD271
          Length = 1749

 Score =  191 bits (484), Expect = 4e-47
 Identities = 93/157 (59%), Positives = 126/157 (80%)
 Frame = +2

Query: 68   LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
            L++ AQ NATLLFQ  +R+ LA++ V+ E +L+R +F W++ EIE +FQ+++   GEMVG
Sbjct: 1012 LTKEAQENATLLFQCLLRSRLATRRVIEEFKLSRISFEWVMGEIETQFQKSIVHPGEMVG 1071

Query: 248  ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
              AAQSIGEPATQMTLNTFHYAGVS+KNVTLGVPRL+EI+NV+K  KTP+L VYL  ++ 
Sbjct: 1072 VIAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVAKNIKTPALTVYLEKESA 1131

Query: 428  HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENTI 538
             D E+AK VQ+ ++HTTL++VT  TE++YDPD  +T+
Sbjct: 1132 ADIEKAKIVQSAIEHTTLKNVTSATEIFYDPDPRSTV 1168

[202][TOP]
>UniRef100_B4YVU5 RNA polymerase II large subunit (Fragment) n=1 Tax=Meloidogyne
           arenaria RepID=B4YVU5_MELAR
          Length = 219

 Score =  191 bits (484), Expect = 4e-47
 Identities = 98/156 (62%), Positives = 117/156 (75%)
 Frame = +2

Query: 68  LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
           +S+ AQ NAT+L  + +R+ L S  +  + +L  +AF WLL EIE RF  A+   GEMVG
Sbjct: 2   ISKQAQENATILMNILLRSMLCSLKMAKQRKLNEEAFEWLLGEIETRFCTAIVQPGEMVG 61

Query: 248 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
           A AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ KTPSL V+L+G A 
Sbjct: 62  ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKKPKTPSLTVFLKGLAA 121

Query: 428 HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENT 535
            DAE+AK V   L+H TLR VT  T +YYDPD  NT
Sbjct: 122 KDAEKAKDVLCRLEHCTLRRVTANTAIYYDPDPRNT 157

[203][TOP]
>UniRef100_A9QMG5 DNA-directed RNA polymerase (Fragment) n=1 Tax=Mesorhabditis
           longespiculosa RepID=A9QMG5_9BILA
          Length = 623

 Score =  191 bits (484), Expect = 4e-47
 Identities = 95/157 (60%), Positives = 119/157 (75%)
 Frame = +2

Query: 68  LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
           +S+ AQ NATLL  + +R++L SK +  +H+L ++ F WLL EIE+RFQQA+       G
Sbjct: 238 ISQQAQYNATLLMNILLRSTLCSKQMAEKHKLNQEGFEWLLGEIEHRFQQAIVXXXXXXG 297

Query: 248 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
             A QS+GEPATQMTLNTFH+AGVSAKNVTLGVPRL+EIINVSK  KTPSL V+L G + 
Sbjct: 298 XLAXQSLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSKSPKTPSLTVFLTGSSA 357

Query: 428 HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENTI 538
            DAE+AK V  +L+HTTLR VT  T +YYDPD +NT+
Sbjct: 358 KDAEKAKDVLCKLEHTTLRKVTANTAIYYDPDPKNTV 394

[204][TOP]
>UniRef100_C4R4Y0 DNA-directed RNA polymerase n=1 Tax=Pichia pastoris GS115
            RepID=C4R4Y0_PICPG
          Length = 1743

 Score =  191 bits (484), Expect = 4e-47
 Identities = 97/158 (61%), Positives = 122/158 (77%)
 Frame = +2

Query: 65   ELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMV 244
            EL + AQ NAT LFQ  VRA LA++ +L E RL R AF W+L  IE +FQ++L   GEMV
Sbjct: 1007 ELIKEAQQNATSLFQCLVRARLATRRILEEFRLNRDAFEWVLGTIEAQFQRSLVHPGEMV 1066

Query: 245  GATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDA 424
            G  AAQSIGEPATQMTLNTFHYAGVS+KNVTLGVPRL+EI+NV+K  KTP+L VYL  + 
Sbjct: 1067 GVIAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVAKNIKTPALTVYLDREI 1126

Query: 425  VHDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENTI 538
              D E+AK +Q+ +++TTL++VT  TE+YYDPD  +T+
Sbjct: 1127 ALDIEKAKVIQSSIEYTTLKNVTSATEIYYDPDPTSTV 1164

[205][TOP]
>UniRef100_B5RSM9 DNA-directed RNA polymerase n=1 Tax=Debaryomyces hansenii
            RepID=B5RSM9_DEBHA
          Length = 1749

 Score =  191 bits (484), Expect = 4e-47
 Identities = 93/157 (59%), Positives = 126/157 (80%)
 Frame = +2

Query: 68   LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
            L++ AQ NATLLFQ  +R+ LA++ V+ E +L+R +F W++ EIE +FQ+++   GEMVG
Sbjct: 1012 LTKEAQENATLLFQCLLRSRLATRRVIEEFKLSRISFEWVMGEIETQFQKSIVHPGEMVG 1071

Query: 248  ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
              AAQSIGEPATQMTLNTFHYAGVS+KNVTLGVPRL+EI+NV+K  KTP+L VYL  ++ 
Sbjct: 1072 VIAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVAKNIKTPALTVYLEKESA 1131

Query: 428  HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENTI 538
             D E+AK VQ+ ++HTTL++VT  TE++YDPD  +T+
Sbjct: 1132 ADIEKAKIVQSAIEHTTLKNVTSATEIFYDPDPRSTV 1168

[206][TOP]
>UniRef100_A5E6J4 DNA-directed RNA polymerase n=1 Tax=Lodderomyces elongisporus
            RepID=A5E6J4_LODEL
          Length = 1745

 Score =  191 bits (484), Expect = 4e-47
 Identities = 96/157 (61%), Positives = 120/157 (76%)
 Frame = +2

Query: 68   LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
            L + AQ NATLLFQ  VR+ LAS+ V+ E +L + +F W L EIE +FQ+++   GEMVG
Sbjct: 1001 LMKEAQENATLLFQCLVRSRLASRRVIEEFKLNKASFEWALGEIETQFQKSVVHPGEMVG 1060

Query: 248  ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
              AAQSIGEPATQMTLNTFHYAGVS+KNVTLGVPRL+EI+NV+K  KTP+L VYL  +  
Sbjct: 1061 VVAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVAKNIKTPALTVYLDPEVA 1120

Query: 428  HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENTI 538
             D E AK VQ+ ++HTTL++VT  TE+YYDPD   T+
Sbjct: 1121 SDIELAKIVQSSIEHTTLKNVTSSTEIYYDPDPRTTV 1157

[207][TOP]
>UniRef100_B4YVX8 RNA polymerase II large subunit (Fragment) n=1 Tax=Meloidogyne
           chitwoodi RepID=B4YVX8_MELCH
          Length = 219

 Score =  190 bits (482), Expect = 6e-47
 Identities = 96/156 (61%), Positives = 119/156 (76%)
 Frame = +2

Query: 68  LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
           +S+ AQ NAT+L  + +R++L S  +  +H+L  +AF WLL E+E RF  A+   GEMVG
Sbjct: 2   ISKQAQENATILMNILLRSALCSLKMAKQHKLNEEAFEWLLGEVETRFCTAVVQPGEMVG 61

Query: 248 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
           A AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ +TPSL V+L+G A 
Sbjct: 62  ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKKPRTPSLTVFLKGLAA 121

Query: 428 HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENT 535
            DA +AK V   L+H TLR VT  T +YYDPD +NT
Sbjct: 122 KDAVKAKDVLCRLEHCTLRKVTANTAIYYDPDPKNT 157

[208][TOP]
>UniRef100_A9QMR7 DNA-directed RNA polymerase (Fragment) n=1 Tax=Bunonema reticulatum
           RepID=A9QMR7_9BILA
          Length = 614

 Score =  190 bits (482), Expect = 6e-47
 Identities = 98/156 (62%), Positives = 117/156 (75%)
 Frame = +2

Query: 68  LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
           +S+ AQ NATLL ++ +R++L S+ +  +HRL  +AF WLL E+  RFQQA         
Sbjct: 224 ISQHAQENATLLIKILLRSTLCSRKMAEQHRLNAEAFEWLLGEVXTRFQQAXXXXXXXXX 283

Query: 248 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
           A AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ KTPSL V+LRG A 
Sbjct: 284 ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKQPKTPSLTVFLRGAAA 343

Query: 428 HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENT 535
            DAE+AK V   L+HTTLR VT  T +YYDPD  NT
Sbjct: 344 KDAEKAKDVLCRLEHTTLRKVTANTAIYYDPDPVNT 379

[209][TOP]
>UniRef100_B6JYP8 DNA-directed RNA polymerase n=1 Tax=Schizosaccharomyces japonicus
            yFS275 RepID=B6JYP8_SCHJY
          Length = 1748

 Score =  190 bits (482), Expect = 6e-47
 Identities = 96/163 (58%), Positives = 122/163 (74%)
 Frame = +2

Query: 50   DEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAP 229
            D   KE+ E    NATLLFQ+ +R+ LA+K V+ E+ L + AF W++ EIE RFQQ    
Sbjct: 1007 DRITKEIQE----NATLLFQILLRSKLATKRVVMEYHLNKIAFEWIIGEIEARFQQCQVN 1062

Query: 230  AGEMVGATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVY 409
             GEMVG  AAQSIGEPATQMTLNTFHYAGVS+KNVTLGVPRL+EI+NV+K  KTPSL +Y
Sbjct: 1063 PGEMVGTLAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVAKNIKTPSLTIY 1122

Query: 410  LRGDAVHDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENTI 538
            L  +   + + AK VQ +++HTTL+ VT  TE++YDPD +NT+
Sbjct: 1123 LLPEIASNMDLAKNVQTQIEHTTLKTVTSATEIHYDPDPQNTV 1165

[210][TOP]
>UniRef100_A9QME9 RNA polymerase 2 (Fragment) n=1 Tax=Choriorhabditis cristata
           RepID=A9QME9_9BILA
          Length = 378

 Score =  189 bits (481), Expect = 8e-47
 Identities = 94/140 (67%), Positives = 113/140 (80%)
 Frame = +2

Query: 116 VRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTL 295
           +R++L SK + + H+L  +AF WLL E+E RFQQA+A  GEMVGA AAQS+GEPATQMTL
Sbjct: 4   IRSTLCSKKMATSHKLNAEAFEWLLGEVETRFQQAIAQPGEMVGALAAQSLGEPATQMTL 63

Query: 296 NTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAERAKQVQAELQHT 475
           NTFHYAGVSAKNVTLGVPRL+EIINVSK  KTPSL  +L+G A  DAE+AK V  +L+HT
Sbjct: 64  NTFHYAGVSAKNVTLGVPRLKEIINVSKTLKTPSLTCFLQGAAAKDAEKAKDVLCKLEHT 123

Query: 476 TLRHVTHMTEVYYDPDLENT 535
           TLR VT  T +YYDP+ +NT
Sbjct: 124 TLRKVTANTAIYYDPEPKNT 143

[211][TOP]
>UniRef100_A9QMS4 DNA-directed RNA polymerase (Fragment) n=1 Tax=Poikilolaimus
           oxycercus RepID=A9QMS4_9BILA
          Length = 612

 Score =  189 bits (480), Expect = 1e-46
 Identities = 94/157 (59%), Positives = 121/157 (77%)
 Frame = +2

Query: 65  ELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMV 244
           ++S+ AQ NATLL  + +R++L SK V  +HRL ++AF ++L EIENRFQ+A+       
Sbjct: 233 KISQQAQYNATLLMNILIRSTLCSKQVAEKHRLNQEAFEYILGEIENRFQRAIVXXXXXX 292

Query: 245 GATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDA 424
           G   AQ +G+PATQMTLNTFHYAGVS+KNVTLGVPRL+EIINVSK+ KTPSL V+L+G A
Sbjct: 293 GVLXAQXLGQPATQMTLNTFHYAGVSSKNVTLGVPRLKEIINVSKQPKTPSLTVFLQGAA 352

Query: 425 VHDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENT 535
             DAE+AK V  +L+HTTLR+VT  T +YYDPD + T
Sbjct: 353 TKDAEKAKDVLCKLEHTTLRNVTANTAIYYDPDPQRT 389

[212][TOP]
>UniRef100_Q84KP6 DNA-directed RNA polymerase n=1 Tax=Cyanidioschyzon merolae
            RepID=Q84KP6_CYAME
          Length = 1819

 Score =  189 bits (479), Expect = 1e-46
 Identities = 100/158 (63%), Positives = 117/158 (74%)
 Frame = +2

Query: 65   ELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMV 244
            ELS  AQ NA LLF  HVRA LA+K VL  HRL  KAF WLL EIE RF +A A  GEMV
Sbjct: 1019 ELSREAQRNAVLLFAAHVRAELATKRVLQIHRLNSKAFAWLLGEIETRFVRARATPGEMV 1078

Query: 245  GATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDA 424
            GA AAQS+GEPATQMTLNTFH+AGVSAKNVTLGVPRL+E+INV+++ KTPS+ VYL+   
Sbjct: 1079 GAVAAQSLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKELINVARQAKTPSVTVYLKSG- 1137

Query: 425  VHDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENTI 538
              D E A  VQ+EL+   LR V   + +Y+DPD  NT+
Sbjct: 1138 -KDKELANIVQSELEQCRLRDVVESSAIYFDPDPANTV 1174

[213][TOP]
>UniRef100_Q6CBQ3 DNA-directed RNA polymerase n=1 Tax=Yarrowia lipolytica
            RepID=Q6CBQ3_YARLI
          Length = 1750

 Score =  188 bits (478), Expect = 2e-46
 Identities = 93/157 (59%), Positives = 120/157 (76%)
 Frame = +2

Query: 68   LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
            L++ AQ NAT+LFQ  VR+   +K V+ E+RL R AF W++ EIE +F +++   GEMVG
Sbjct: 1010 LAKEAQENATMLFQCLVRSRFPTKRVIEEYRLNRAAFEWVMGEIETQFAKSVVHPGEMVG 1069

Query: 248  ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
              AAQSIGEPATQMTLNTFHYAGVS+KNVTLGVPRL+EI+NV+K  KTP+L VYL     
Sbjct: 1070 VIAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVAKNIKTPALTVYLEPSVA 1129

Query: 428  HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENTI 538
             D E+AK VQ+ ++HT+L++VT  TE+YYDPD   T+
Sbjct: 1130 ADIEKAKVVQSAIEHTSLKNVTAATEIYYDPDPRTTV 1166

[214][TOP]
>UniRef100_Q5ACI7 DNA-directed RNA polymerase n=1 Tax=Candida albicans
            RepID=Q5ACI7_CANAL
          Length = 1728

 Score =  188 bits (478), Expect = 2e-46
 Identities = 92/157 (58%), Positives = 122/157 (77%)
 Frame = +2

Query: 68   LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
            L + AQ NATLLFQ  +R+ LA++ V+ E +L R +F W++ EIE +FQ+++   GEMVG
Sbjct: 1007 LVKEAQENATLLFQCLLRSRLAARRVIEEFKLNRASFEWVMGEIETQFQKSIVHPGEMVG 1066

Query: 248  ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
              AAQSIGEPATQMTLNTFHYAGVS+KNVTLGVPRL+EI+NV+K  KTP++ V+L  +  
Sbjct: 1067 VVAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVAKNIKTPAMTVFLDPEVA 1126

Query: 428  HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENTI 538
             D E+AK VQ+ ++HTTL++VT  TE+YYDPD   T+
Sbjct: 1127 SDIEKAKIVQSAIEHTTLKNVTSSTEIYYDPDPRTTV 1163

[215][TOP]
>UniRef100_C4YN85 DNA-directed RNA polymerase n=1 Tax=Candida albicans
            RepID=C4YN85_CANAL
          Length = 1742

 Score =  188 bits (478), Expect = 2e-46
 Identities = 92/157 (58%), Positives = 122/157 (77%)
 Frame = +2

Query: 68   LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
            L + AQ NATLLFQ  +R+ LA++ V+ E +L R +F W++ EIE +FQ+++   GEMVG
Sbjct: 1007 LVKEAQENATLLFQCLLRSRLAARRVIEEFKLNRASFEWVMGEIETQFQKSIVHPGEMVG 1066

Query: 248  ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
              AAQSIGEPATQMTLNTFHYAGVS+KNVTLGVPRL+EI+NV+K  KTP++ V+L  +  
Sbjct: 1067 VVAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVAKNIKTPAMTVFLDPEVA 1126

Query: 428  HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENTI 538
             D E+AK VQ+ ++HTTL++VT  TE+YYDPD   T+
Sbjct: 1127 SDIEKAKIVQSAIEHTTLKNVTSSTEIYYDPDPRTTV 1163

[216][TOP]
>UniRef100_B9WN64 DNA-directed RNA polymerase n=1 Tax=Candida dubliniensis CD36
            RepID=B9WN64_CANDC
          Length = 1735

 Score =  188 bits (478), Expect = 2e-46
 Identities = 93/157 (59%), Positives = 121/157 (77%)
 Frame = +2

Query: 68   LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
            L + AQ NATLLFQ  +R+ LA++ V+ E +L R +F W+L EIE +FQ+++   GEMVG
Sbjct: 1007 LVKEAQENATLLFQCLLRSRLAARRVIEEFKLNRVSFEWVLGEIETQFQKSIVHPGEMVG 1066

Query: 248  ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
              AAQSIGEPATQMTLNTFHYAGVS+KNVTLGVPRL+EI+NV+K  KTP++ VYL  +  
Sbjct: 1067 VVAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVAKNIKTPAMTVYLDPEVA 1126

Query: 428  HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENTI 538
             D E+AK VQ+ ++HTTL++VT   E+YYDPD   T+
Sbjct: 1127 SDIEKAKIVQSAIEHTTLKNVTSSAEIYYDPDPRTTV 1163

[217][TOP]
>UniRef100_A9QMH0 DNA-directed RNA polymerase (Fragment) n=1 Tax=Panagrellus
           redivivus RepID=A9QMH0_PANRE
          Length = 636

 Score =  188 bits (477), Expect = 2e-46
 Identities = 94/157 (59%), Positives = 118/157 (75%)
 Frame = +2

Query: 65  ELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMV 244
           ++S  AQ NATLL  + +R++ A+K V   ++LT +AF W++ EIE+RF QA+   GEMV
Sbjct: 238 KISRQAQENATLLMNILLRSTFATKQVAEVYKLTNEAFEWIIGEIESRFNQAIVQPGEMV 297

Query: 245 GATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDA 424
           G  AAQS+GEPATQMTLNTFH+AGVSAKNVTLGVPRL+EIINVSK+ KTPSL V+L G+A
Sbjct: 298 GPLAAQSLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSKQPKTPSLTVFLTGEA 357

Query: 425 VHDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENT 535
               E AK +   L+HTTLR VT  T +YYDP+   T
Sbjct: 358 TRKPEAAKDILCRLEHTTLRKVTSNTAIYYDPNPRQT 394

[218][TOP]
>UniRef100_A9UED6 RNA polymerase 2 largest subunit (Fragment) n=1 Tax=Diploscapter
           sp. JU359 RepID=A9UED6_9BILA
          Length = 374

 Score =  187 bits (476), Expect = 3e-46
 Identities = 94/140 (67%), Positives = 113/140 (80%)
 Frame = +2

Query: 116 VRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTL 295
           +R++L SK +   ++L  +AF WLL E+E RF QA+A  GEMVGA AAQS+GEPATQMTL
Sbjct: 5   LRSTLCSKKMGMAYKLDSEAFEWLLGEVEQRFNQAIAQPGEMVGALAAQSLGEPATQMTL 64

Query: 296 NTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAERAKQVQAELQHT 475
           NTFHYAGVSAKNVTLGVPRL+EIINVSK+ KTPSL V+L+G A  DAE+AK V  +L+HT
Sbjct: 65  NTFHYAGVSAKNVTLGVPRLKEIINVSKKLKTPSLTVFLQGAAAKDAEKAKDVLCKLEHT 124

Query: 476 TLRHVTHMTEVYYDPDLENT 535
           TLR VT  T +YYDPD +NT
Sbjct: 125 TLRRVTTNTAIYYDPDAKNT 144

[219][TOP]
>UniRef100_C4Y5N4 DNA-directed RNA polymerase n=1 Tax=Clavispora lusitaniae ATCC 42720
            RepID=C4Y5N4_CLAL4
          Length = 1402

 Score =  187 bits (476), Expect = 3e-46
 Identities = 92/157 (58%), Positives = 124/157 (78%)
 Frame = +2

Query: 68   LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
            L++ AQ +ATLLFQ  VR+ LA++ ++ E +L+R +F W+  EIE +FQ+++   GEMVG
Sbjct: 966  LAKEAQEDATLLFQCLVRSRLAARRIIEEFKLSRISFEWVCGEIETQFQKSIVHPGEMVG 1025

Query: 248  ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
              AAQSIGEPATQMTLNTFHYAGVS+KNVTLGVPRL+EI+NV+K  KTP+L VYL  +  
Sbjct: 1026 VIAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVAKNIKTPALTVYLDPEIA 1085

Query: 428  HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENTI 538
             D E+AK VQ+ ++HTTL++VT  TE++YDPD  +T+
Sbjct: 1086 SDIEKAKVVQSAIEHTTLKNVTSATEIFYDPDPRSTV 1122

[220][TOP]
>UniRef100_B4YVV2 RNA polymerase II large subunit (Fragment) n=1 Tax=Meloidogyne
           javanica RepID=B4YVV2_MELJA
          Length = 219

 Score =  187 bits (475), Expect = 4e-46
 Identities = 97/156 (62%), Positives = 114/156 (73%)
 Frame = +2

Query: 68  LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
           +S+ AQ N T+L    +R+ L S  +  +H+L  +AF WLL EIE RF  A    GEMVG
Sbjct: 2   ISKQAQENTTILMNTLLRSMLCSLKMAKQHKLNEEAFEWLLGEIETRFCTATVQPGEMVG 61

Query: 248 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
           A AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ KTPSL V+L+G A 
Sbjct: 62  ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKKPKTPSLTVFLKGLAA 121

Query: 428 HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENT 535
            DAE+AK V   L+H T R VT  T +YYDPD  NT
Sbjct: 122 KDAEKAKDVLCRLEHCTSRKVTANTAIYYDPDPRNT 157

[221][TOP]
>UniRef100_A9QMF7 RNA polymerase 2 (Fragment) n=1 Tax=Pelodera pseudoteres
           RepID=A9QMF7_9PELO
          Length = 366

 Score =  187 bits (474), Expect = 5e-46
 Identities = 93/138 (67%), Positives = 111/138 (80%)
 Frame = +2

Query: 122 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 301
           ++L SK +  +H+L   AF WLL EIE+RFQQA+   GEMVGA AAQS+GEPATQMTLNT
Sbjct: 1   STLCSKQMADKHKLNESAFDWLLGEIEHRFQQAIVQPGEMVGALAAQSLGEPATQMTLNT 60

Query: 302 FHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAERAKQVQAELQHTTL 481
           FH+AGVSAKNVTLGVPRL+EIINVSK  +TPSL V+L+G A  DAE+AK V  +L+HTTL
Sbjct: 61  FHFAGVSAKNVTLGVPRLKEIINVSKSPRTPSLTVFLQGAAAKDAEKAKDVLCKLEHTTL 120

Query: 482 RHVTHMTEVYYDPDLENT 535
           R VT  T +YYDPD +NT
Sbjct: 121 RKVTSNTAIYYDPDPKNT 138

[222][TOP]
>UniRef100_P36594 DNA-directed RNA polymerase II subunit rpb1 n=1
            Tax=Schizosaccharomyces pombe RepID=RPB1_SCHPO
          Length = 1752

 Score =  186 bits (473), Expect = 7e-46
 Identities = 92/157 (58%), Positives = 119/157 (75%)
 Frame = +2

Query: 68   LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
            ++   Q NATLLFQ+ +R+  A K V+ E+RL + AF W++ E+E RFQQA+   GEMVG
Sbjct: 1009 ITRDVQNNATLLFQILLRSKFAVKRVIMEYRLNKVAFEWIMGEVEARFQQAVVSPGEMVG 1068

Query: 248  ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
              AAQSIGEPATQMTLNTFHYAGVS+KNVTLGVPRL+EI+NV+K  KTPSL +YL     
Sbjct: 1069 TLAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVAKNIKTPSLTIYLMPWIA 1128

Query: 428  HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENTI 538
             + + AK VQ +++HTTL  VT  TE++YDPD ++T+
Sbjct: 1129 ANMDLAKNVQTQIEHTTLSTVTSATEIHYDPDPQDTV 1165

[223][TOP]
>UniRef100_Q9BMP3 DNA-directed RNA polymerase (Fragment) n=1 Tax=Monosiga brevicollis
            RepID=Q9BMP3_MONBE
          Length = 1743

 Score =  186 bits (472), Expect = 9e-46
 Identities = 92/157 (58%), Positives = 118/157 (75%)
 Frame = +2

Query: 68   LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
            LS+ AQ NATLLF  ++R+ L+S+  +  HRL  KAF W+L E+E RF QA A  GEMVG
Sbjct: 947  LSKVAQRNATLLFNCNLRSVLSSRQCIVRHRLNTKAFDWILGEVEKRFMQAQAQPGEMVG 1006

Query: 248  ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
            A AAQS+GEPATQMTLNTFH AGVSAKNVTLGVPRL+EIINVSK+ KTPS+V+++  D  
Sbjct: 1007 ALAAQSLGEPATQMTLNTFHLAGVSAKNVTLGVPRLKEIINVSKKPKTPSMVLFIGEDKY 1066

Query: 428  HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENTI 538
             D   A +V   ++H+TL+ + H + +YYDPD  N++
Sbjct: 1067 QDRNTAMKVLFSIEHSTLKTIIHSSSIYYDPDEMNSV 1103

[224][TOP]
>UniRef100_A9V5W6 DNA-directed RNA polymerase n=1 Tax=Monosiga brevicollis
           RepID=A9V5W6_MONBE
          Length = 1307

 Score =  186 bits (472), Expect = 9e-46
 Identities = 92/157 (58%), Positives = 118/157 (75%)
 Frame = +2

Query: 68  LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
           LS+ AQ NATLLF  ++R+ L+S+  +  HRL  KAF W+L E+E RF QA A  GEMVG
Sbjct: 511 LSKVAQRNATLLFNCNLRSVLSSRQCIVRHRLNTKAFDWILGEVEKRFMQAQAQPGEMVG 570

Query: 248 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
           A AAQS+GEPATQMTLNTFH AGVSAKNVTLGVPRL+EIINVSK+ KTPS+V+++  D  
Sbjct: 571 ALAAQSLGEPATQMTLNTFHLAGVSAKNVTLGVPRLKEIINVSKKPKTPSMVLFIGEDKY 630

Query: 428 HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENTI 538
            D   A +V   ++H+TL+ + H + +YYDPD  N++
Sbjct: 631 QDRNTAMKVLFSIEHSTLKTIIHSSSIYYDPDEMNSV 667

[225][TOP]
>UniRef100_C1MI48 DNA-directed RNA polymerase n=1 Tax=Micromonas pusilla CCMP1545
            RepID=C1MI48_9CHLO
          Length = 1694

 Score =  186 bits (471), Expect = 1e-45
 Identities = 93/158 (58%), Positives = 122/158 (77%)
 Frame = +2

Query: 65   ELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMV 244
            ELS  AQ N+T+LF   VR++L++K V+ + +L+  AF W++ E+E+RF+ ALAP G+ +
Sbjct: 1009 ELSLEAQRNSTILFFALVRSTLSAKRVMKDFKLSPAAFNWVVGEVESRFKMALAPPGDGI 1068

Query: 245  GATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDA 424
            G  AAQSIGEPATQMTLNTFH+AGVSAKNVTLGVPRL+EIIN++K+ KTPSL V LR D 
Sbjct: 1069 GTVAAQSIGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINIAKKIKTPSLTVALRKDL 1128

Query: 425  VHDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENTI 538
              D   AK VQA L++TTL  V  ++E+YYDPD  +T+
Sbjct: 1129 AGDRAMAKNVQASLEYTTLHSVAAVSEIYYDPDPTDTV 1166

[226][TOP]
>UniRef100_Q9HGZ5 DNA-directed RNA polymerase n=2 Tax=Aspergillus RepID=Q9HGZ5_ASPOR
          Length = 1748

 Score =  184 bits (468), Expect = 3e-45
 Identities = 90/157 (57%), Positives = 123/157 (78%)
 Frame = +2

Query: 68   LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
            +S+ AQ NATLLF+  +R+ LA + +++E+ + + AF  ++  IE+RF +A APAGEMVG
Sbjct: 1026 ISQEAQENATLLFKAQLRSRLAFRRLVTEYSMNKLAFQHVIGAIESRFAKANAPAGEMVG 1085

Query: 248  ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
              AAQSIGEPATQMTLNTFH+AGVS+KNVTLGVPRL+EI+NV+   KTPS+ VY      
Sbjct: 1086 VLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNVATNIKTPSMTVYQEPGRT 1145

Query: 428  HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENTI 538
            HD E AKQ+++ ++HT+LR VT  TE+YYDPD+++T+
Sbjct: 1146 HDKEGAKQLRSVVEHTSLRSVTEATEIYYDPDIQSTV 1182

[227][TOP]
>UniRef100_B0DB45 DNA-directed RNA polymerase n=1 Tax=Laccaria bicolor S238N-H82
            RepID=B0DB45_LACBS
          Length = 1742

 Score =  184 bits (467), Expect = 3e-45
 Identities = 94/157 (59%), Positives = 118/157 (75%)
 Frame = +2

Query: 68   LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
            LS  AQLNATL F++H+RA+ AS+ VL +  LTR+AF W++ E+E +F Q++   GEM G
Sbjct: 1013 LSREAQLNATLTFRMHLRATFASRRVLEKFHLTREAFDWVMGEVETKFNQSVVHPGEMCG 1072

Query: 248  ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
              AAQSIGEPATQMTLNTFHYAGVS+KNVTLGVPRL+EIINV+   KTPSL V+L  +  
Sbjct: 1073 TLAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEIINVATNIKTPSLTVHLDPEIA 1132

Query: 428  HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENTI 538
              +  AK VQ EL +T+LR VT   E++YDPD  +TI
Sbjct: 1133 VSSSLAKNVQQELAYTSLRTVTAAVEIWYDPDPSSTI 1169

[228][TOP]
>UniRef100_B3RM26 DNA-directed RNA polymerase n=1 Tax=Trichoplax adhaerens
            RepID=B3RM26_TRIAD
          Length = 1784

 Score =  184 bits (466), Expect = 5e-45
 Identities = 97/157 (61%), Positives = 117/157 (74%)
 Frame = +2

Query: 68   LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
            +S+ AQ NATLLF + +R+ L+SK V  E+ LT +AF WL+ E++          GEMVG
Sbjct: 1017 ISKQAQENATLLFNILLRSVLSSKRVTEEYHLTSEAFDWLIGEVQ---------PGEMVG 1067

Query: 248  ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
              AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ KTPSL V L G A 
Sbjct: 1068 PLAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKKPKTPSLTVILTGPAA 1127

Query: 428  HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENTI 538
             DAE+AK V   L+HTTLR VT  T +YYDP+ +NT+
Sbjct: 1128 RDAEKAKDVLCRLEHTTLRKVTANTAIYYDPNPKNTV 1164

[229][TOP]
>UniRef100_C1EA31 DNA-directed RNA polymerase n=1 Tax=Micromonas sp. RCC299
            RepID=C1EA31_9CHLO
          Length = 1720

 Score =  183 bits (465), Expect = 6e-45
 Identities = 94/157 (59%), Positives = 121/157 (77%)
 Frame = +2

Query: 68   LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
            LS  AQ NAT+LF   VR++L++K V+SE RL+  AF W++ E+E+RF+ ALAP G+ +G
Sbjct: 1008 LSVEAQRNATILFFALVRSTLSAKRVMSEFRLSPAAFNWVIGEVESRFKVALAPPGDGIG 1067

Query: 248  ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
              AAQSIGEPATQMTLNTFH+AGVSAKNVTLGVPRL+E+IN++K+ KTPSL V LR D  
Sbjct: 1068 TVAAQSIGEPATQMTLNTFHFAGVSAKNVTLGVPRLKELINIAKKIKTPSLTVALRKDLA 1127

Query: 428  HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENTI 538
             D   AK VQ+ L++TTL  V   +EV+YDPD  +T+
Sbjct: 1128 GDRAMAKNVQSILEYTTLHSVAAASEVWYDPDPTDTV 1164

[230][TOP]
>UniRef100_Q4P7Q0 DNA-directed RNA polymerase n=1 Tax=Ustilago maydis
            RepID=Q4P7Q0_USTMA
          Length = 1774

 Score =  183 bits (464), Expect = 8e-45
 Identities = 90/157 (57%), Positives = 117/157 (74%)
 Frame = +2

Query: 68   LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
            +S  AQ+NATLLF++H+R+ L SK+V+ +H + ++A+ W+L EIE +F +++A  GEM G
Sbjct: 1018 ISREAQMNATLLFKIHLRSYLCSKMVIEQHHINKEAWEWILGEIEGQFARSVANPGEMCG 1077

Query: 248  ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
              AAQSIGEPATQMTLNTFHYAGVS+KNVTLGVPRL+EIIN ++  KTPS+ VYL     
Sbjct: 1078 TLAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEIINCAENIKTPSVTVYLTEQYS 1137

Query: 428  HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENTI 538
               E AK +Q  L HTTL+ VT   EV+YDPD   T+
Sbjct: 1138 QSQESAKVIQTALAHTTLQTVTSAVEVHYDPDPSATV 1174

[231][TOP]
>UniRef100_A8N128 DNA-directed RNA polymerase n=1 Tax=Coprinopsis cinerea okayama7#130
            RepID=A8N128_COPC7
          Length = 1642

 Score =  182 bits (463), Expect = 1e-44
 Identities = 93/157 (59%), Positives = 120/157 (76%)
 Frame = +2

Query: 68   LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
            LS+ AQ N+TLLF++H+RA+ A++ V+ + RLTR+AF W+L EIE +F Q++A  GEM G
Sbjct: 960  LSKEAQDNSTLLFRMHLRATFAARKVIEQMRLTREAFEWILGEIETKFNQSIAHPGEMCG 1019

Query: 248  ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
              AAQSIGEPATQMTLNTFHYAGVS+KNVTLGVPRL+EIINV+   KTPSL ++L+ +  
Sbjct: 1020 TLAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEIINVATNIKTPSLTIHLQPEIA 1079

Query: 428  HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENTI 538
               E AK VQ EL  T+L+ VT   E++YDP+   TI
Sbjct: 1080 VAPELAKNVQQELAFTSLKTVTSAVEIWYDPNPTTTI 1116

[232][TOP]
>UniRef100_B8BQ02 DNA-directed RNA polymerase n=1 Tax=Thalassiosira pseudonana CCMP1335
            RepID=B8BQ02_THAPS
          Length = 1627

 Score =  182 bits (462), Expect = 1e-44
 Identities = 95/157 (60%), Positives = 115/157 (73%)
 Frame = +2

Query: 68   LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
            LS  AQ NAT L+++ +R+ LASK VL E+RL+  A  W+L EIE RF  A    GEM G
Sbjct: 1025 LSVEAQNNATTLYRILIRSYLASKRVLREYRLSEAALIWVLGEIEARFHHAKVSPGEMAG 1084

Query: 248  ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
              AAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINV+K  KTP L +YL+    
Sbjct: 1085 VLAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVAKTVKTPGLTIYLQNHVS 1144

Query: 428  HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENTI 538
             DA+ AK V + +++T L  +T +TE+YYDPD  NTI
Sbjct: 1145 GDADVAKLVHSMIEYTVLTDLTKLTEIYYDPDPVNTI 1181

[233][TOP]
>UniRef100_C5LSN9 DNA-directed RNA polymerase n=1 Tax=Perkinsus marinus ATCC 50983
            RepID=C5LSN9_9ALVE
          Length = 1667

 Score =  182 bits (462), Expect = 1e-44
 Identities = 90/153 (58%), Positives = 116/153 (75%)
 Frame = +2

Query: 80   AQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAA 259
            AQ NAT++ Q H+R  LAS+ +L   RL ++A  WLL E+E RF+++L  AGE VG  AA
Sbjct: 1049 AQHNATVVLQAHLRYHLASRKLLERDRLGQRAVDWLLGEVEQRFEKSLVAAGESVGTIAA 1108

Query: 260  QSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 439
            QSIGEPATQMTLNTFH+AGV +KNVTLGVPRL+EIINV+K  KTPS+ VYL  D   D  
Sbjct: 1109 QSIGEPATQMTLNTFHFAGVGSKNVTLGVPRLKEIINVAKNLKTPSMTVYLHPDYASDDA 1168

Query: 440  RAKQVQAELQHTTLRHVTHMTEVYYDPDLENTI 538
            +AKQVQ+EL+HT+L  +T  T++ +DPD+  +I
Sbjct: 1169 KAKQVQSELEHTSLGKITSYTQILFDPDVRTSI 1201

[234][TOP]
>UniRef100_C9SR21 DNA-directed RNA polymerase II subunit RPB1 n=1 Tax=Verticillium
            albo-atrum VaMs.102 RepID=C9SR21_9PEZI
          Length = 1756

 Score =  182 bits (461), Expect = 2e-44
 Identities = 95/158 (60%), Positives = 123/158 (77%), Gaps = 1/158 (0%)
 Frame = +2

Query: 68   LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
            LS+ A  NAT+LF+ H+R+ LA K V    RL + AF+ +L E+E R+ +A    GEMVG
Sbjct: 1021 LSKEADYNATILFKAHIRSRLAFKGVACLQRLNKLAFSHVLGELEGRWAKASISPGEMVG 1080

Query: 248  ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYL-RGDA 424
              AAQSIGEPATQMTLNTFH+AGVS+KNVTLGVPRL+EI+N+++  KTPS+VVYL  G+A
Sbjct: 1081 VLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNLAQNIKTPSMVVYLSEGNA 1140

Query: 425  VHDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENTI 538
              +A  AK +++ ++HTTLR VT MTE+YYDPDLENT+
Sbjct: 1141 TQEA--AKALRSTVEHTTLRSVTAMTEIYYDPDLENTV 1176

[235][TOP]
>UniRef100_A1YIA7 DNA-directed RNA polymerase (Fragment) n=1 Tax=Pichia kudriavzevii
            RepID=A1YIA7_ISSOR
          Length = 1647

 Score =  182 bits (461), Expect = 2e-44
 Identities = 88/153 (57%), Positives = 118/153 (77%)
 Frame = +2

Query: 80   AQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAA 259
            A+ N+TLLFQ  +R+ LA++ VL E++L + AF W++  I  +F ++L   GEMVG  AA
Sbjct: 934  ARENSTLLFQCLIRSKLATRRVLEEYKLNKDAFEWVVGTIAQQFARSLVNPGEMVGVVAA 993

Query: 260  QSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 439
            QSIGEPATQMTLNTFHYAGVS+KNVTLGVPRL+EI+NV+K  KTP+L VYL  +   D E
Sbjct: 994  QSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVAKNFKTPALTVYLEEEYATDIE 1053

Query: 440  RAKQVQAELQHTTLRHVTHMTEVYYDPDLENTI 538
            +AK +Q+ ++HT+L++VT  TE+YYDPD   T+
Sbjct: 1054 KAKSIQSAIEHTSLKNVTACTEIYYDPDPRTTV 1086

[236][TOP]
>UniRef100_B6H9U6 DNA-directed RNA polymerase n=1 Tax=Penicillium chrysogenum Wisconsin
            54-1255 RepID=B6H9U6_PENCW
          Length = 1733

 Score =  181 bits (459), Expect = 3e-44
 Identities = 89/157 (56%), Positives = 122/157 (77%)
 Frame = +2

Query: 68   LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
            +S+ AQ+NATLLF+  +R+ LA + +++++ L + AF  +L  IE+RF +A A  GEMVG
Sbjct: 1022 ISQEAQVNATLLFKAQLRSRLAFRRLVTDYSLNKLAFQHVLGAIESRFARAAANPGEMVG 1081

Query: 248  ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
              AAQSIGEPATQMTLNTFH+AGVS+KNVTLGVPRL+EI+NV+   KTPS+ VY  G   
Sbjct: 1082 VLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNVATNIKTPSMTVYQEGVKT 1141

Query: 428  HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENTI 538
            HD E AK +++ ++HT+LR VT  TE+YYDPD+++T+
Sbjct: 1142 HDKEGAKLLRSLVEHTSLRSVTESTEIYYDPDIQSTV 1178

[237][TOP]
>UniRef100_A1CNZ4 DNA-directed RNA polymerase n=1 Tax=Aspergillus clavatus
            RepID=A1CNZ4_ASPCL
          Length = 1765

 Score =  180 bits (457), Expect = 5e-44
 Identities = 89/157 (56%), Positives = 119/157 (75%)
 Frame = +2

Query: 68   LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
            +S  AQ NATLLF+  +R+ LA + +++E+ + + AF  +L  IE+RF +A A  GEMVG
Sbjct: 1028 ISHEAQENATLLFKAQLRSRLAFRRLVTEYSMNKLAFQHVLGAIESRFAKAAASPGEMVG 1087

Query: 248  ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
              AAQSIGEPATQMTLNTFH+AGVS+KNVTLGVPRL+EI+NV+   KTPS+ VY      
Sbjct: 1088 VLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNVATNIKTPSMTVYQMPSKC 1147

Query: 428  HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENTI 538
            HD E AKQ+++ ++HT+LR VT  TE+YYDPD++ T+
Sbjct: 1148 HDKESAKQLRSAVEHTSLRSVTEATEIYYDPDIQTTV 1184

[238][TOP]
>UniRef100_A8Q5I6 DNA-directed RNA polymerase n=1 Tax=Malassezia globosa CBS 7966
            RepID=A8Q5I6_MALGO
          Length = 1607

 Score =  180 bits (456), Expect = 7e-44
 Identities = 91/158 (57%), Positives = 117/158 (74%)
 Frame = +2

Query: 65   ELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMV 244
            ++S   Q NATLLF++H+R+ L SK V+  H LTR+A+ W+L EIE +F +++A  GEM 
Sbjct: 810  KISRVMQENATLLFKIHLRSFLCSKQVIEVHHLTREAWEWVLGEIEGQFARSVAQPGEMC 869

Query: 245  GATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDA 424
            G  AAQSIGEPATQMTLNTFHYAGVS+KNVTLGVPRL+EIIN ++  KTPS+ VYL    
Sbjct: 870  GTLAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEIINCAENIKTPSVTVYLHPKY 929

Query: 425  VHDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENTI 538
               +E AK +Q  L +TTL+ VT   EV+YDPD  +T+
Sbjct: 930  SASSESAKIIQTALAYTTLQTVTSAVEVFYDPDPSSTV 967

[239][TOP]
>UniRef100_C1H3Q4 DNA-directed RNA polymerase n=1 Tax=Paracoccidioides brasiliensis
            Pb01 RepID=C1H3Q4_PARBA
          Length = 1748

 Score =  179 bits (454), Expect = 1e-43
 Identities = 89/157 (56%), Positives = 120/157 (76%)
 Frame = +2

Query: 68   LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
            +S  AQ +ATLLF+  +R+ LA + +++E+ L + AF  +L  IENRF +A+A  GEMVG
Sbjct: 1035 ISREAQESATLLFKAQLRSRLAFRRLVTEYSLNKLAFQHVLGAIENRFSRAMANPGEMVG 1094

Query: 248  ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
              AAQSIGEPATQMTLNTFH+AGVS+KNVTLGVPRL+EI+NV+   KTPS+ VY      
Sbjct: 1095 VLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNVATHIKTPSMTVYQDSSRA 1154

Query: 428  HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENTI 538
             D E AKQ+++ ++HT+LR VT  TE+YYDPD+++T+
Sbjct: 1155 MDKESAKQLRSVVEHTSLRSVTEATEIYYDPDIQSTV 1191

[240][TOP]
>UniRef100_C1GHL1 DNA-directed RNA polymerase n=1 Tax=Paracoccidioides brasiliensis
            Pb18 RepID=C1GHL1_PARBD
          Length = 1746

 Score =  179 bits (454), Expect = 1e-43
 Identities = 89/157 (56%), Positives = 120/157 (76%)
 Frame = +2

Query: 68   LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
            +S  AQ +ATLLF+  +R+ LA + +++E+ L + AF  +L  IENRF +A+A  GEMVG
Sbjct: 1029 ISREAQESATLLFKAQLRSRLAFRRLVTEYSLNKLAFQHVLGAIENRFSRAMANPGEMVG 1088

Query: 248  ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
              AAQSIGEPATQMTLNTFH+AGVS+KNVTLGVPRL+EI+NV+   KTPS+ VY      
Sbjct: 1089 VLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNVATHIKTPSMTVYQDSSRA 1148

Query: 428  HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENTI 538
             D E AKQ+++ ++HT+LR VT  TE+YYDPD+++T+
Sbjct: 1149 MDKESAKQLRSVVEHTSLRSVTEATEIYYDPDIQSTV 1185

[241][TOP]
>UniRef100_C0SE75 DNA-directed RNA polymerase n=1 Tax=Paracoccidioides brasiliensis
            Pb03 RepID=C0SE75_PARBP
          Length = 2106

 Score =  179 bits (454), Expect = 1e-43
 Identities = 89/157 (56%), Positives = 120/157 (76%)
 Frame = +2

Query: 68   LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
            +S  AQ +ATLLF+  +R+ LA + +++E+ L + AF  +L  IENRF +A+A  GEMVG
Sbjct: 1029 ISREAQESATLLFKAQLRSRLAFRRLVTEYSLNKLAFQHVLGAIENRFSRAMANPGEMVG 1088

Query: 248  ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
              AAQSIGEPATQMTLNTFH+AGVS+KNVTLGVPRL+EI+NV+   KTPS+ VY      
Sbjct: 1089 VLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNVATHIKTPSMTVYQDSSRA 1148

Query: 428  HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENTI 538
             D E AKQ+++ ++HT+LR VT  TE+YYDPD+++T+
Sbjct: 1149 MDKESAKQLRSVVEHTSLRSVTEATEIYYDPDIQSTV 1185

[242][TOP]
>UniRef100_B7G9I2 DNA-directed RNA polymerase (Fragment) n=1 Tax=Phaeodactylum
            tricornutum CCAP 1055/1 RepID=B7G9I2_PHATR
          Length = 1706

 Score =  179 bits (453), Expect = 1e-43
 Identities = 92/157 (58%), Positives = 115/157 (73%)
 Frame = +2

Query: 68   LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
            LS  AQ NAT L+++ +R  L+SK VL + RL++ A  W++ EIE RF  A+   GEM G
Sbjct: 963  LSVEAQSNATTLYRILIRTMLSSKRVLKDWRLSKAALNWVVGEIETRFNIAMVNPGEMAG 1022

Query: 248  ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
              AAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINV+K  KTP L +YL+ +  
Sbjct: 1023 VLAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVAKTPKTPGLTIYLQEEVS 1082

Query: 428  HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENTI 538
             D + A+QV A L+ T L  V   TE+YYDPD++NT+
Sbjct: 1083 GDEKVAEQVVAMLEFTVLGDVVKKTEIYYDPDVKNTV 1119

[243][TOP]
>UniRef100_Q5CH45 DNA-directed RNA polymerase n=1 Tax=Cryptosporidium hominis
            RepID=Q5CH45_CRYHO
          Length = 1895

 Score =  179 bits (453), Expect = 1e-43
 Identities = 88/152 (57%), Positives = 115/152 (75%)
 Frame = +2

Query: 83   QLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQ 262
            Q NAT L  +H+R+SLASK +L   RL   AF W+L EIE++F ++LA +GEMVG  AAQ
Sbjct: 1059 QKNATTLLGIHIRSSLASKKILEVDRLGPTAFEWILGEIEHQFYRSLAHSGEMVGTIAAQ 1118

Query: 263  SIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAER 442
            SIGEPATQMTLNTFH+AGV +KNVTLGVPRL+E+INV+K  +TP+L VYL     +D E+
Sbjct: 1119 SIGEPATQMTLNTFHFAGVGSKNVTLGVPRLRELINVAKNVRTPTLTVYLESGIANDQEQ 1178

Query: 443  AKQVQAELQHTTLRHVTHMTEVYYDPDLENTI 538
            AK V   L+HTTL+++T +  + YDP+ + TI
Sbjct: 1179 AKDVLTLLEHTTLQNITTIAHILYDPEQDKTI 1210

[244][TOP]
>UniRef100_B9PMD7 DNA-directed RNA polymerase n=2 Tax=Toxoplasma gondii
            RepID=B9PMD7_TOXGO
          Length = 1892

 Score =  179 bits (453), Expect = 1e-43
 Identities = 92/157 (58%), Positives = 114/157 (72%)
 Frame = +2

Query: 68   LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
            +S   Q NAT+  + H+R  L S+ +L    +  KA  WLL E+E  F +ALA AGE VG
Sbjct: 1036 ISAEVQENATIFMKAHLRTVLNSRRLLERECIGPKALQWLLGEVERHFHRALAHAGECVG 1095

Query: 248  ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
            A AAQSIGEPATQMTLNTFH+AGV +KNVTLGVPRL+E+INV+K+ KTPSL VYL+ +  
Sbjct: 1096 AIAAQSIGEPATQMTLNTFHFAGVGSKNVTLGVPRLKELINVAKQVKTPSLTVYLQDEIA 1155

Query: 428  HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENTI 538
             D ERAK VQ  L+HTTL  VT +++V YDPD  +TI
Sbjct: 1156 MDQERAKDVQTHLEHTTLDRVTVVSQVIYDPDPTDTI 1192

[245][TOP]
>UniRef100_B6KEC6 DNA-directed RNA polymerase n=1 Tax=Toxoplasma gondii ME49
            RepID=B6KEC6_TOXGO
          Length = 1892

 Score =  179 bits (453), Expect = 1e-43
 Identities = 92/157 (58%), Positives = 114/157 (72%)
 Frame = +2

Query: 68   LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
            +S   Q NAT+  + H+R  L S+ +L    +  KA  WLL E+E  F +ALA AGE VG
Sbjct: 1036 ISAEVQENATIFMKAHLRTVLNSRRLLERECIGPKALQWLLGEVERHFHRALAHAGECVG 1095

Query: 248  ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
            A AAQSIGEPATQMTLNTFH+AGV +KNVTLGVPRL+E+INV+K+ KTPSL VYL+ +  
Sbjct: 1096 AIAAQSIGEPATQMTLNTFHFAGVGSKNVTLGVPRLKELINVAKQVKTPSLTVYLQDEIA 1155

Query: 428  HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENTI 538
             D ERAK VQ  L+HTTL  VT +++V YDPD  +TI
Sbjct: 1156 MDQERAKDVQTHLEHTTLDRVTVVSQVIYDPDPTDTI 1192

[246][TOP]
>UniRef100_Q0D054 DNA-directed RNA polymerase n=1 Tax=Aspergillus terreus NIH2624
            RepID=Q0D054_ASPTN
          Length = 1742

 Score =  179 bits (453), Expect = 1e-43
 Identities = 89/157 (56%), Positives = 118/157 (75%)
 Frame = +2

Query: 68   LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
            +S  AQ NATLLF+  +R+ LA + +++E+ + + AF  +L  IE RF +A A  GEMVG
Sbjct: 1027 ISVEAQENATLLFKAQLRSRLAFRRLVTEYSMNKLAFQHVLGAIETRFAKAAASPGEMVG 1086

Query: 248  ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
              AAQSIGEPATQMTLNTFH+AGVS+KNVTLGVPRL+EI+NV+   KTPS+ VY      
Sbjct: 1087 VLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNVATNIKTPSMTVYQEPYTC 1146

Query: 428  HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENTI 538
            HD E AKQ+++ ++HT+LR VT  TE+YYDPD++ T+
Sbjct: 1147 HDKESAKQLRSAVEHTSLRSVTEATEIYYDPDIQTTV 1183

[247][TOP]
>UniRef100_B6QAY2 DNA-directed RNA polymerase n=1 Tax=Penicillium marneffei ATCC 18224
            RepID=B6QAY2_PENMQ
          Length = 1744

 Score =  179 bits (453), Expect = 1e-43
 Identities = 88/157 (56%), Positives = 120/157 (76%)
 Frame = +2

Query: 68   LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
            +S+ AQ +ATLLF+  +R+ LA K +++++ + + AF  +L  IE RF QA A  GEMVG
Sbjct: 1027 ISKEAQTSATLLFKAQLRSRLAFKRLVTQYSMNKLAFKHVLGAIEMRFAQAQANPGEMVG 1086

Query: 248  ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
              AAQSIGEPATQMTLNTFH+AGVS+KNVTLGVPRL+E++NV+   KTPS+ VY      
Sbjct: 1087 VLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKELLNVATNIKTPSMTVYQESHRK 1146

Query: 428  HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENTI 538
            HD E AKQ+++ ++HT+LR VT  TE+YYDPD+++T+
Sbjct: 1147 HDKEAAKQLRSVVEHTSLRSVTEATEIYYDPDIQSTV 1183

[248][TOP]
>UniRef100_B0XMU6 DNA-directed RNA polymerase n=2 Tax=Aspergillus fumigatus
            RepID=B0XMU6_ASPFC
          Length = 1750

 Score =  178 bits (451), Expect = 2e-43
 Identities = 88/157 (56%), Positives = 119/157 (75%)
 Frame = +2

Query: 68   LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
            +S  AQ NAT+LF+  +R+ LA + +++E+ + + AF  +L  IE+RF +A A  GEMVG
Sbjct: 1026 ISREAQENATMLFKAQLRSRLAFRRLVTEYSMNKLAFQHVLGAIESRFAKAAANPGEMVG 1085

Query: 248  ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
              AAQSIGEPATQMTLNTFH+AGVS+KNVTLGVPRL+EI+NV+   KTPS+ VY      
Sbjct: 1086 VLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNVATNIKTPSMTVYQLPHRC 1145

Query: 428  HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENTI 538
            HD E AKQ+++ ++HT+LR VT  TE+YYDPD++ T+
Sbjct: 1146 HDKESAKQLRSVVEHTSLRSVTEATEIYYDPDIQTTV 1182

[249][TOP]
>UniRef100_B8M2Y2 DNA-directed RNA polymerase n=1 Tax=Talaromyces stipitatus ATCC 10500
            RepID=B8M2Y2_TALSN
          Length = 1755

 Score =  177 bits (450), Expect = 3e-43
 Identities = 88/157 (56%), Positives = 120/157 (76%)
 Frame = +2

Query: 68   LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 247
            +S+ AQ +ATLLF+  +R+ LA K +++++ + + AF  +L  IE RF +A A  GEMVG
Sbjct: 1027 ISKEAQTSATLLFKAQLRSRLAFKRLVTQYSMNKLAFNHVLGAIEMRFARAQANPGEMVG 1086

Query: 248  ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 427
              AAQSIGEPATQMTLNTFH+AGVS+KNVTLGVPRL+EI+NV+   KTPS+ VY      
Sbjct: 1087 VLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNVATNIKTPSMTVYQEPHRK 1146

Query: 428  HDAERAKQVQAELQHTTLRHVTHMTEVYYDPDLENTI 538
            HD E AKQ+++ ++HT+LR VT  TE+YYDPD+++T+
Sbjct: 1147 HDKESAKQLRSVVEHTSLRSVTEATEIYYDPDIQSTV 1183

[250][TOP]
>UniRef100_B2AA31 DNA-directed RNA polymerase n=1 Tax=Podospora anserina
            RepID=B2AA31_PODAN
          Length = 1748

 Score =  177 bits (450), Expect = 3e-43
 Identities = 94/163 (57%), Positives = 121/163 (74%), Gaps = 5/163 (3%)
 Frame = +2

Query: 65   ELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMV 244
            ELS  A  NAT+LF++ +R+ LA K +  E RL + AF  +L E+ENR+ +++   GEMV
Sbjct: 1021 ELSREADYNATILFKIQIRSRLAFKRLAVEQRLNKLAFDHVLGELENRWSRSMVSPGEMV 1080

Query: 245  GATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDA 424
            G  AAQSIGEPATQMTLNTFH+AGVS+KNVTLGVPRL+EI+NV+K  KTPS+VVYL    
Sbjct: 1081 GVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNVAKDIKTPSMVVYL---- 1136

Query: 425  VHDAERAKQVQAE-----LQHTTLRHVTHMTEVYYDPDLENTI 538
              D ERA Q  A+     ++HT+LR VT MTE+YYDPD+ +T+
Sbjct: 1137 --DKERATQEDAKSMRNLVEHTSLRSVTAMTEIYYDPDITSTV 1177