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[1][TOP]
>UniRef100_O04142 DNA-directed RNA polymerase (Fragment) n=1 Tax=Porphyra yezoensis
RepID=O04142_PORYE
Length = 1685
Score = 342 bits (877), Expect = 1e-92
Identities = 178/178 (100%), Positives = 178/178 (100%)
Frame = +2
Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ
Sbjct: 914 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 973
Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS
Sbjct: 974 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 1033
Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE
Sbjct: 1034 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 1091
[2][TOP]
>UniRef100_O09451 DNA-directed RNA polymerase (Fragment) n=1 Tax=Bonnemaisonia hamifera
RepID=O09451_9FLOR
Length = 1732
Score = 194 bits (493), Expect = 3e-48
Identities = 105/181 (58%), Positives = 126/181 (69%), Gaps = 3/181 (1%)
Frame = +2
Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEA---LKELSE 172
SDL P ++++GV +LL RTRVL ++A ++ A E + P DE + L +
Sbjct: 897 SDLKPDQVLKGVSMLLKRTRVLVLGDEAALENAALEPGMEEDDEGNPIDEKPTMVDPLMK 956
Query: 173 TAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATA 352
AQ NATLLFQ+H+R+ LA K ++ HRLT KAF WLL E+ENRF GE +GA A
Sbjct: 957 EAQENATLLFQIHMRSMLACKKLIQLHRLTFKAFLWLLGEVENRFMMCRVAPGENIGAIA 1016
Query: 353 AQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDA 532
AQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK TKTPSL VYL+ D
Sbjct: 1017 AQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKNTKTPSLTVYLKSQYAGDK 1076
Query: 533 E 535
E
Sbjct: 1077 E 1077
[3][TOP]
>UniRef100_Q9AXN0 DNA-directed RNA polymerase n=1 Tax=Glaucosphaera vacuolata
RepID=Q9AXN0_9RHOD
Length = 1746
Score = 187 bits (476), Expect = 3e-46
Identities = 106/191 (55%), Positives = 128/191 (67%), Gaps = 13/191 (6%)
Frame = +2
Query: 2 SDLSPSKIVRGVELLLHRTRVLT-------------SDEDAEVDAIAREMLPPDGSASGP 142
SDL+P I++GV++LL R V+ D+ AEVD
Sbjct: 973 SDLNPRDILKGVQILLSRCNVVALPPKSIKLLDEGDGDQVAEVDT--------------- 1017
Query: 143 QDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALA 322
+ ++L+ AQ NATLL+ +H+RA LASKV+L E+RL +KAF LL EIENRF A
Sbjct: 1018 -NSVSRQLAVEAQENATLLWSIHIRAFLASKVILKEYRLDKKAFMHLLGEIENRFLHAKC 1076
Query: 323 PAGEMVGATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVV 502
P GEM+GA A QSIGEPATQMTLNTFH+AGVSAKNVTLGVPRL+EIINV+K KTPSL V
Sbjct: 1077 PPGEMIGAVAPQSIGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVAKHCKTPSLTV 1136
Query: 503 YLRGDAVHDAE 535
YLRG+A DAE
Sbjct: 1137 YLRGEAARDAE 1147
[4][TOP]
>UniRef100_Q9AXN1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Botryocladia
uvarioides RepID=Q9AXN1_9FLOR
Length = 1712
Score = 181 bits (460), Expect = 2e-44
Identities = 99/170 (58%), Positives = 123/170 (72%)
Frame = +2
Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
SDL+P ++ +G+++LL RTRV+ +D + + + + +G + A ET Q
Sbjct: 898 SDLTPVQVWKGIKMLLKRTRVVEIGDDQDDEDVDDGVTDENGEMIDRKPVADPLTLET-Q 956
Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
NAT++FQ+HVR+ LA K V+ HRL AF W+L EIENRF A+A GE +GA AAQS
Sbjct: 957 ENATMIFQIHVRSMLACKQVMVRHRLDINAFLWILGEIENRFLGAIAAPGENIGAIAAQS 1016
Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLR 511
IGEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK TKTPSL VYLR
Sbjct: 1017 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVSKHTKTPSLTVYLR 1066
[5][TOP]
>UniRef100_UPI00019270E9 PREDICTED: similar to DNA-directed RNA polymerase II subunit RPB1
isoform 2 n=1 Tax=Hydra magnipapillata
RepID=UPI00019270E9
Length = 2014
Score = 179 bits (453), Expect = 1e-43
Identities = 98/178 (55%), Positives = 121/178 (67%)
Frame = +2
Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
+DLSP K++ ++ L R V+ ++ +LS+ AQ
Sbjct: 1002 TDLSPLKVINDIKDLTKRLLVVKGED---------------------------KLSKEAQ 1034
Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
LNAT+LFQ+H+R++L SK V+ E RLT +AF WLL E+E+RF A A GEMVGA AAQS
Sbjct: 1035 LNATMLFQIHLRSTLCSKRVIEEFRLTSEAFDWLLGEVESRFNLAQAQPGEMVGALAAQS 1094
Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ KTPSL V+L G A DAE
Sbjct: 1095 LGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKKPKTPSLTVFLLGQAARDAE 1152
[6][TOP]
>UniRef100_UPI00019270BB PREDICTED: similar to DNA-directed RNA polymerase II subunit RPB1
isoform 1 n=1 Tax=Hydra magnipapillata
RepID=UPI00019270BB
Length = 2041
Score = 179 bits (453), Expect = 1e-43
Identities = 98/178 (55%), Positives = 121/178 (67%)
Frame = +2
Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
+DLSP K++ ++ L R V+ ++ +LS+ AQ
Sbjct: 1003 TDLSPLKVINDIKDLTKRLLVVKGED---------------------------KLSKEAQ 1035
Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
LNAT+LFQ+H+R++L SK V+ E RLT +AF WLL E+E+RF A A GEMVGA AAQS
Sbjct: 1036 LNATMLFQIHLRSTLCSKRVIEEFRLTSEAFDWLLGEVESRFNLAQAQPGEMVGALAAQS 1095
Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ KTPSL V+L G A DAE
Sbjct: 1096 LGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKKPKTPSLTVFLLGQAARDAE 1153
[7][TOP]
>UniRef100_Q30BD9 DNA-directed RNA polymerase n=1 Tax=Glaucocystis nostochinearum
RepID=Q30BD9_9EUKA
Length = 1852
Score = 176 bits (445), Expect = 1e-42
Identities = 100/178 (56%), Positives = 120/178 (67%)
Frame = +2
Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
SDL P I++GV LL + V+ ++ V+A Q
Sbjct: 989 SDLDPVDIIKGVNLLTKQLVVIPGEDPLSVEA---------------------------Q 1021
Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
NAT+LFQ+ VR+ LASK VL+E+RLT AF WLL EIE+RF QA+A GEMVGA AAQS
Sbjct: 1022 ANATMLFQILVRSCLASKRVLTEYRLTSHAFEWLLGEIESRFLQAIANPGEMVGAIAAQS 1081
Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
IGEPATQMTLNTFHYAGVS+KNVTLGVPRL+EIINV+K+ KTPSLVVYL+ D+E
Sbjct: 1082 IGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEIINVAKKVKTPSLVVYLKEYCRRDSE 1139
[8][TOP]
>UniRef100_UPI0000546D90 PREDICTED: im:7136071 isoform 1 n=1 Tax=Danio rerio
RepID=UPI0000546D90
Length = 1972
Score = 174 bits (441), Expect = 4e-42
Identities = 94/178 (52%), Positives = 120/178 (67%)
Frame = +2
Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
+DL+P+++V GV+ L + ++ D+ +LS AQ
Sbjct: 999 TDLNPARVVDGVKELSKKLVIVNGDD---------------------------QLSRQAQ 1031
Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
NATLLF +H+R++L SK + E RL+ +AF WLL EIE +F Q++A GEMVGA AAQS
Sbjct: 1032 ENATLLFNIHLRSTLCSKRMTEEFRLSTEAFDWLLGEIETKFNQSIAHPGEMVGALAAQS 1091
Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN+SKR KTPSL V+L G A DAE
Sbjct: 1092 LGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKRPKTPSLTVFLLGQAARDAE 1149
[9][TOP]
>UniRef100_Q4SF83 DNA-directed RNA polymerase (Fragment) n=1 Tax=Tetraodon nigroviridis
RepID=Q4SF83_TETNG
Length = 1745
Score = 173 bits (438), Expect = 8e-42
Identities = 98/186 (52%), Positives = 122/186 (65%), Gaps = 8/186 (4%)
Frame = +2
Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALK------- 160
+DLSP ++V G+ + + S +IA SG + + K
Sbjct: 876 TDLSPLRVVEGILSSVSLNEICCSPPFTLNISIADIQFEHVFGLSGTHELSKKLVIVNGD 935
Query: 161 -ELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEM 337
LS AQ NATLLF +H+R++L SK + E RL+ +AF WLL EIE +F Q++A GEM
Sbjct: 936 DPLSRQAQQNATLLFNIHLRSTLCSKRMTEEFRLSTEAFDWLLGEIETKFNQSIAHPGEM 995
Query: 338 VGATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGD 517
VGA AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN+SKR KTPSL V+L G
Sbjct: 996 VGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKRPKTPSLTVFLLGQ 1055
Query: 518 AVHDAE 535
A DAE
Sbjct: 1056 AARDAE 1061
[10][TOP]
>UniRef100_O01375 DNA-directed RNA polymerase (Fragment) n=1 Tax=Teratorhabditis
palmarum RepID=O01375_9BILA
Length = 631
Score = 172 bits (437), Expect = 1e-41
Identities = 96/178 (53%), Positives = 119/178 (66%)
Frame = +2
Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
+DLSP +++ G+ L + V+ S ED +S+ AQ
Sbjct: 207 TDLSPVRVIEGIRELSKKL-VIVSGED--------------------------RISKQAQ 239
Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
NATLL + +R++L SK V S H+L +AF WLL EIE+RF+QA+A GEMVGA AAQS
Sbjct: 240 YNATLLMNILIRSTLCSKRVASMHKLNNEAFDWLLGEIEHRFKQAIAQPGEMVGALAAQS 299
Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
+GEPATQMTLNTFH+AGVSAKNVTLGVPRL+EIINVSK+ KTPSL +YL G A DAE
Sbjct: 300 LGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSKKPKTPSLTIYLTGAAARDAE 357
[11][TOP]
>UniRef100_A9QMS7 DNA-directed RNA polymerase (Fragment) n=1 Tax=Cuticonema vivipara
RepID=A9QMS7_9BILA
Length = 407
Score = 172 bits (437), Expect = 1e-41
Identities = 97/178 (54%), Positives = 120/178 (67%)
Frame = +2
Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
+DLSP K+++GV+ L R V+ S ED ++S+ AQ
Sbjct: 211 TDLSPLKVIQGVKDLTSRL-VIVSGED--------------------------KISQQAQ 243
Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
NATLL + +R++L SK + +H+L +AF WLL EIE +F QA+A GEMVGA AAQS
Sbjct: 244 YNATLLMNILLRSTLCSKRLAEKHKLNTEAFEWLLGEIETKFNQAIAQPGEMVGALAAQS 303
Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK KTPSL V+L+G A DAE
Sbjct: 304 LGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKNPKTPSLTVFLQGGAAKDAE 361
[12][TOP]
>UniRef100_UPI00017B0A92 UPI00017B0A92 related cluster n=1 Tax=Tetraodon nigroviridis
RepID=UPI00017B0A92
Length = 1714
Score = 172 bits (436), Expect = 1e-41
Identities = 94/178 (52%), Positives = 116/178 (65%)
Frame = +2
Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
+DLSP ++V G L + ++ D+ LS AQ
Sbjct: 980 TDLSPLRVVEGTHELSKKLVIVNGDDP---------------------------LSRQAQ 1012
Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
NATLLF +H+R++L SK + E RL+ +AF WLL EIE +F Q++A GEMVGA AAQS
Sbjct: 1013 QNATLLFNIHLRSTLCSKRMTEEFRLSTEAFDWLLGEIETKFNQSIAHPGEMVGALAAQS 1072
Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN+SKR KTPSL V+L G A DAE
Sbjct: 1073 LGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKRPKTPSLTVFLLGQAARDAE 1130
[13][TOP]
>UniRef100_Q6JU03 RNA polymerase II largest subunit (Fragment) n=1 Tax=Podura
aquatica RepID=Q6JU03_9HEXA
Length = 306
Score = 172 bits (436), Expect = 1e-41
Identities = 97/178 (54%), Positives = 116/178 (65%)
Frame = +2
Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
+DLSP ++V GVE LL + V+ D+ +S+ A
Sbjct: 10 TDLSPFRVVEGVEDLLKKCIVVNGDDP---------------------------MSQKAN 42
Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
NATLLFQ VR++L S+ V E RLT +AF WL+ EIE RFQQAL GEMVGA AAQS
Sbjct: 43 ANATLLFQCLVRSTLCSRRVAEEFRLTTEAFEWLIGEIETRFQQALVQPGEMVGALAAQS 102
Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
+GEPATQMTLNTFH+AGVS+KNVT GVPRL+EIIN+SKR K PSL V+L G A DAE
Sbjct: 103 LGEPATQMTLNTFHFAGVSSKNVTXGVPRLKEIINISKRPKAPSLTVFLTGAAARDAE 160
[14][TOP]
>UniRef100_B4E3V7 DNA-directed RNA polymerase n=1 Tax=Homo sapiens RepID=B4E3V7_HUMAN
Length = 1935
Score = 172 bits (436), Expect = 1e-41
Identities = 94/178 (52%), Positives = 118/178 (66%)
Frame = +2
Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
SDL P K+V GV+ L + ++ D+ LS AQ
Sbjct: 967 SDLHPIKVVEGVKKLSKKLVIVNGDDP---------------------------LSRQAQ 999
Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
NATLLF +H+R++L S+ + E RL+ +AF WLL EIE++F QA+A GEMVGA AAQS
Sbjct: 1000 ENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQS 1059
Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN+SK+ KTPSL V+L G + DAE
Sbjct: 1060 LGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSARDAE 1117
[15][TOP]
>UniRef100_UPI0001796DD3 PREDICTED: similar to DNA-directed RNA polymerase II subunit RPB1
(RNA polymerase II subunit B1) (DNA-directed RNA
polymerase II subunit A) (DNA-directed RNA polymerase III
largest subunit) n=1 Tax=Equus caballus
RepID=UPI0001796DD3
Length = 1834
Score = 172 bits (435), Expect = 2e-41
Identities = 94/178 (52%), Positives = 118/178 (66%)
Frame = +2
Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
SDL P K+V GV+ L + ++ D+ LS AQ
Sbjct: 1002 SDLHPIKVVEGVKELSKKLVIVNGDDP---------------------------LSRQAQ 1034
Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
NATLLF +H+R++L S+ + E RL+ +AF WLL EIE++F QA+A GEMVGA AAQS
Sbjct: 1035 ENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQS 1094
Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN+SK+ KTPSL V+L G + DAE
Sbjct: 1095 LGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSARDAE 1152
[16][TOP]
>UniRef100_UPI0000EBDCD2 PREDICTED: polymerase (RNA) II (DNA directed) polypeptide A, 220kDa
isoform 4 n=1 Tax=Bos taurus RepID=UPI0000EBDCD2
Length = 1970
Score = 172 bits (435), Expect = 2e-41
Identities = 94/178 (52%), Positives = 118/178 (66%)
Frame = +2
Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
SDL P K+V GV+ L + ++ D+ LS AQ
Sbjct: 1002 SDLHPIKVVEGVKELSKKLVIVNGDDP---------------------------LSRQAQ 1034
Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
NATLLF +H+R++L S+ + E RL+ +AF WLL EIE++F QA+A GEMVGA AAQS
Sbjct: 1035 ENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQS 1094
Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN+SK+ KTPSL V+L G + DAE
Sbjct: 1095 LGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSARDAE 1152
[17][TOP]
>UniRef100_UPI0000E24648 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
(RPB1) n=1 Tax=Pan troglodytes RepID=UPI0000E24648
Length = 1913
Score = 172 bits (435), Expect = 2e-41
Identities = 94/178 (52%), Positives = 118/178 (66%)
Frame = +2
Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
SDL P K+V GV+ L + ++ D+ LS AQ
Sbjct: 1002 SDLHPIKVVEGVKELSKKLVIVNGDDP---------------------------LSRQAQ 1034
Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
NATLLF +H+R++L S+ + E RL+ +AF WLL EIE++F QA+A GEMVGA AAQS
Sbjct: 1035 ENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQS 1094
Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN+SK+ KTPSL V+L G + DAE
Sbjct: 1095 LGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSARDAE 1152
[18][TOP]
>UniRef100_UPI00005A0B2C PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
(RPB1) isoform 23 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B2C
Length = 1888
Score = 172 bits (435), Expect = 2e-41
Identities = 94/178 (52%), Positives = 118/178 (66%)
Frame = +2
Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
SDL P K+V GV+ L + ++ D+ LS AQ
Sbjct: 1002 SDLHPIKVVEGVKELSKKLVIVNGDDP---------------------------LSRQAQ 1034
Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
NATLLF +H+R++L S+ + E RL+ +AF WLL EIE++F QA+A GEMVGA AAQS
Sbjct: 1035 ENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQS 1094
Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN+SK+ KTPSL V+L G + DAE
Sbjct: 1095 LGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSARDAE 1152
[19][TOP]
>UniRef100_UPI00005A0B2B PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
(RPB1) isoform 22 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B2B
Length = 1892
Score = 172 bits (435), Expect = 2e-41
Identities = 94/178 (52%), Positives = 118/178 (66%)
Frame = +2
Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
SDL P K+V GV+ L + ++ D+ LS AQ
Sbjct: 1004 SDLHPIKVVEGVKELSKKLVIVNGDDP---------------------------LSRQAQ 1036
Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
NATLLF +H+R++L S+ + E RL+ +AF WLL EIE++F QA+A GEMVGA AAQS
Sbjct: 1037 ENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQS 1096
Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN+SK+ KTPSL V+L G + DAE
Sbjct: 1097 LGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSARDAE 1154
[20][TOP]
>UniRef100_UPI00005A0B2A PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
(RPB1) isoform 21 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B2A
Length = 1896
Score = 172 bits (435), Expect = 2e-41
Identities = 94/178 (52%), Positives = 118/178 (66%)
Frame = +2
Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
SDL P K+V GV+ L + ++ D+ LS AQ
Sbjct: 1004 SDLHPIKVVEGVKELSKKLVIVNGDDP---------------------------LSRQAQ 1036
Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
NATLLF +H+R++L S+ + E RL+ +AF WLL EIE++F QA+A GEMVGA AAQS
Sbjct: 1037 ENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQS 1096
Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN+SK+ KTPSL V+L G + DAE
Sbjct: 1097 LGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSARDAE 1154
[21][TOP]
>UniRef100_UPI00005A0B29 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
(RPB1) isoform 20 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B29
Length = 1891
Score = 172 bits (435), Expect = 2e-41
Identities = 94/178 (52%), Positives = 118/178 (66%)
Frame = +2
Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
SDL P K+V GV+ L + ++ D+ LS AQ
Sbjct: 971 SDLHPIKVVEGVKELSKKLVIVNGDDP---------------------------LSRQAQ 1003
Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
NATLLF +H+R++L S+ + E RL+ +AF WLL EIE++F QA+A GEMVGA AAQS
Sbjct: 1004 ENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQS 1063
Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN+SK+ KTPSL V+L G + DAE
Sbjct: 1064 LGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSARDAE 1121
[22][TOP]
>UniRef100_UPI00005A0B28 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
(RPB1) isoform 19 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B28
Length = 1908
Score = 172 bits (435), Expect = 2e-41
Identities = 94/178 (52%), Positives = 118/178 (66%)
Frame = +2
Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
SDL P K+V GV+ L + ++ D+ LS AQ
Sbjct: 988 SDLHPIKVVEGVKELSKKLVIVNGDDP---------------------------LSRQAQ 1020
Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
NATLLF +H+R++L S+ + E RL+ +AF WLL EIE++F QA+A GEMVGA AAQS
Sbjct: 1021 ENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQS 1080
Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN+SK+ KTPSL V+L G + DAE
Sbjct: 1081 LGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSARDAE 1138
[23][TOP]
>UniRef100_UPI00005A0B27 PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide
A isoform 18 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B27
Length = 1831
Score = 172 bits (435), Expect = 2e-41
Identities = 94/178 (52%), Positives = 118/178 (66%)
Frame = +2
Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
SDL P K+V GV+ L + ++ D+ LS AQ
Sbjct: 1002 SDLHPIKVVEGVKELSKKLVIVNGDDP---------------------------LSRQAQ 1034
Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
NATLLF +H+R++L S+ + E RL+ +AF WLL EIE++F QA+A GEMVGA AAQS
Sbjct: 1035 ENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQS 1094
Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN+SK+ KTPSL V+L G + DAE
Sbjct: 1095 LGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSARDAE 1152
[24][TOP]
>UniRef100_UPI00005A0B26 PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide
A isoform 17 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B26
Length = 1684
Score = 172 bits (435), Expect = 2e-41
Identities = 94/178 (52%), Positives = 118/178 (66%)
Frame = +2
Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
SDL P K+V GV+ L + ++ D+ LS AQ
Sbjct: 992 SDLHPIKVVEGVKELSKKLVIVNGDDP---------------------------LSRQAQ 1024
Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
NATLLF +H+R++L S+ + E RL+ +AF WLL EIE++F QA+A GEMVGA AAQS
Sbjct: 1025 ENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQS 1084
Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN+SK+ KTPSL V+L G + DAE
Sbjct: 1085 LGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSARDAE 1142
[25][TOP]
>UniRef100_UPI00005A0B25 PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide
A isoform 16 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B25
Length = 1752
Score = 172 bits (435), Expect = 2e-41
Identities = 94/178 (52%), Positives = 118/178 (66%)
Frame = +2
Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
SDL P K+V GV+ L + ++ D+ LS AQ
Sbjct: 992 SDLHPIKVVEGVKELSKKLVIVNGDDP---------------------------LSRQAQ 1024
Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
NATLLF +H+R++L S+ + E RL+ +AF WLL EIE++F QA+A GEMVGA AAQS
Sbjct: 1025 ENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQS 1084
Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN+SK+ KTPSL V+L G + DAE
Sbjct: 1085 LGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSARDAE 1142
[26][TOP]
>UniRef100_UPI00005A0B24 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
(RPB1) isoform 15 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B24
Length = 1924
Score = 172 bits (435), Expect = 2e-41
Identities = 94/178 (52%), Positives = 118/178 (66%)
Frame = +2
Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
SDL P K+V GV+ L + ++ D+ LS AQ
Sbjct: 1004 SDLHPIKVVEGVKELSKKLVIVNGDDP---------------------------LSRQAQ 1036
Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
NATLLF +H+R++L S+ + E RL+ +AF WLL EIE++F QA+A GEMVGA AAQS
Sbjct: 1037 ENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQS 1096
Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN+SK+ KTPSL V+L G + DAE
Sbjct: 1097 LGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSARDAE 1154
[27][TOP]
>UniRef100_UPI00005A0B23 PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide
A isoform 14 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B23
Length = 1653
Score = 172 bits (435), Expect = 2e-41
Identities = 94/178 (52%), Positives = 118/178 (66%)
Frame = +2
Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
SDL P K+V GV+ L + ++ D+ LS AQ
Sbjct: 975 SDLHPIKVVEGVKELSKKLVIVNGDDP---------------------------LSRQAQ 1007
Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
NATLLF +H+R++L S+ + E RL+ +AF WLL EIE++F QA+A GEMVGA AAQS
Sbjct: 1008 ENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQS 1067
Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN+SK+ KTPSL V+L G + DAE
Sbjct: 1068 LGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSARDAE 1125
[28][TOP]
>UniRef100_UPI00005A0B22 PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide
A isoform 13 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B22
Length = 1722
Score = 172 bits (435), Expect = 2e-41
Identities = 94/178 (52%), Positives = 118/178 (66%)
Frame = +2
Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
SDL P K+V GV+ L + ++ D+ LS AQ
Sbjct: 975 SDLHPIKVVEGVKELSKKLVIVNGDDP---------------------------LSRQAQ 1007
Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
NATLLF +H+R++L S+ + E RL+ +AF WLL EIE++F QA+A GEMVGA AAQS
Sbjct: 1008 ENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQS 1067
Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN+SK+ KTPSL V+L G + DAE
Sbjct: 1068 LGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSARDAE 1125
[29][TOP]
>UniRef100_UPI00005A0B21 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
(RPB1) isoform 12 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B21
Length = 1922
Score = 172 bits (435), Expect = 2e-41
Identities = 94/178 (52%), Positives = 118/178 (66%)
Frame = +2
Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
SDL P K+V GV+ L + ++ D+ LS AQ
Sbjct: 1002 SDLHPIKVVEGVKELSKKLVIVNGDDP---------------------------LSRQAQ 1034
Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
NATLLF +H+R++L S+ + E RL+ +AF WLL EIE++F QA+A GEMVGA AAQS
Sbjct: 1035 ENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQS 1094
Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN+SK+ KTPSL V+L G + DAE
Sbjct: 1095 LGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSARDAE 1152
[30][TOP]
>UniRef100_UPI00005A0B20 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
(RPB1) isoform 11 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B20
Length = 1923
Score = 172 bits (435), Expect = 2e-41
Identities = 94/178 (52%), Positives = 118/178 (66%)
Frame = +2
Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
SDL P K+V GV+ L + ++ D+ LS AQ
Sbjct: 1003 SDLHPIKVVEGVKELSKKLVIVNGDDP---------------------------LSRQAQ 1035
Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
NATLLF +H+R++L S+ + E RL+ +AF WLL EIE++F QA+A GEMVGA AAQS
Sbjct: 1036 ENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQS 1095
Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN+SK+ KTPSL V+L G + DAE
Sbjct: 1096 LGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSARDAE 1153
[31][TOP]
>UniRef100_UPI00005A0B1F PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide
A isoform 10 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B1F
Length = 1840
Score = 172 bits (435), Expect = 2e-41
Identities = 94/178 (52%), Positives = 118/178 (66%)
Frame = +2
Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
SDL P K+V GV+ L + ++ D+ LS AQ
Sbjct: 998 SDLHPIKVVEGVKELSKKLVIVNGDDP---------------------------LSRQAQ 1030
Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
NATLLF +H+R++L S+ + E RL+ +AF WLL EIE++F QA+A GEMVGA AAQS
Sbjct: 1031 ENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQS 1090
Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN+SK+ KTPSL V+L G + DAE
Sbjct: 1091 LGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSARDAE 1148
[32][TOP]
>UniRef100_UPI00005A0B1E PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide
A isoform 9 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B1E
Length = 1851
Score = 172 bits (435), Expect = 2e-41
Identities = 94/178 (52%), Positives = 118/178 (66%)
Frame = +2
Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
SDL P K+V GV+ L + ++ D+ LS AQ
Sbjct: 998 SDLHPIKVVEGVKELSKKLVIVNGDDP---------------------------LSRQAQ 1030
Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
NATLLF +H+R++L S+ + E RL+ +AF WLL EIE++F QA+A GEMVGA AAQS
Sbjct: 1031 ENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQS 1090
Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN+SK+ KTPSL V+L G + DAE
Sbjct: 1091 LGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSARDAE 1148
[33][TOP]
>UniRef100_UPI00005A0B1D PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
(RPB1) isoform 1 n=2 Tax=Canis lupus familiaris
RepID=UPI00005A0B1D
Length = 1764
Score = 172 bits (435), Expect = 2e-41
Identities = 94/178 (52%), Positives = 118/178 (66%)
Frame = +2
Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
SDL P K+V GV+ L + ++ D+ LS AQ
Sbjct: 1020 SDLHPIKVVEGVKELSKKLVIVNGDDP---------------------------LSRQAQ 1052
Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
NATLLF +H+R++L S+ + E RL+ +AF WLL EIE++F QA+A GEMVGA AAQS
Sbjct: 1053 ENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQS 1112
Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN+SK+ KTPSL V+L G + DAE
Sbjct: 1113 LGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSARDAE 1170
[34][TOP]
>UniRef100_UPI00005A0B1C PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide
A isoform 8 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B1C
Length = 1719
Score = 172 bits (435), Expect = 2e-41
Identities = 94/178 (52%), Positives = 118/178 (66%)
Frame = +2
Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
SDL P K+V GV+ L + ++ D+ LS AQ
Sbjct: 996 SDLHPIKVVEGVKELSKKLVIVNGDDP---------------------------LSRQAQ 1028
Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
NATLLF +H+R++L S+ + E RL+ +AF WLL EIE++F QA+A GEMVGA AAQS
Sbjct: 1029 ENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQS 1088
Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN+SK+ KTPSL V+L G + DAE
Sbjct: 1089 LGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSARDAE 1146
[35][TOP]
>UniRef100_UPI00005A0B1B PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide
A isoform 7 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B1B
Length = 1858
Score = 172 bits (435), Expect = 2e-41
Identities = 94/178 (52%), Positives = 118/178 (66%)
Frame = +2
Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
SDL P K+V GV+ L + ++ D+ LS AQ
Sbjct: 996 SDLHPIKVVEGVKELSKKLVIVNGDDP---------------------------LSRQAQ 1028
Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
NATLLF +H+R++L S+ + E RL+ +AF WLL EIE++F QA+A GEMVGA AAQS
Sbjct: 1029 ENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQS 1088
Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN+SK+ KTPSL V+L G + DAE
Sbjct: 1089 LGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSARDAE 1146
[36][TOP]
>UniRef100_UPI00005A0B1A PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
(RPB1) isoform 6 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B1A
Length = 1767
Score = 172 bits (435), Expect = 2e-41
Identities = 94/178 (52%), Positives = 118/178 (66%)
Frame = +2
Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
SDL P K+V GV+ L + ++ D+ LS AQ
Sbjct: 990 SDLHPIKVVEGVKELSKKLVIVNGDDP---------------------------LSRQAQ 1022
Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
NATLLF +H+R++L S+ + E RL+ +AF WLL EIE++F QA+A GEMVGA AAQS
Sbjct: 1023 ENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQS 1082
Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN+SK+ KTPSL V+L G + DAE
Sbjct: 1083 LGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSARDAE 1140
[37][TOP]
>UniRef100_UPI00005A0B19 PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide
A isoform 5 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B19
Length = 1693
Score = 172 bits (435), Expect = 2e-41
Identities = 94/178 (52%), Positives = 118/178 (66%)
Frame = +2
Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
SDL P K+V GV+ L + ++ D+ LS AQ
Sbjct: 988 SDLHPIKVVEGVKELSKKLVIVNGDDP---------------------------LSRQAQ 1020
Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
NATLLF +H+R++L S+ + E RL+ +AF WLL EIE++F QA+A GEMVGA AAQS
Sbjct: 1021 ENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQS 1080
Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN+SK+ KTPSL V+L G + DAE
Sbjct: 1081 LGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSARDAE 1138
[38][TOP]
>UniRef100_UPI00005A0B17 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
(RPB1) isoform 3 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B17
Length = 1788
Score = 172 bits (435), Expect = 2e-41
Identities = 94/178 (52%), Positives = 118/178 (66%)
Frame = +2
Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
SDL P K+V GV+ L + ++ D+ LS AQ
Sbjct: 1002 SDLHPIKVVEGVKELSKKLVIVNGDDP---------------------------LSRQAQ 1034
Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
NATLLF +H+R++L S+ + E RL+ +AF WLL EIE++F QA+A GEMVGA AAQS
Sbjct: 1035 ENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQS 1094
Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN+SK+ KTPSL V+L G + DAE
Sbjct: 1095 LGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSARDAE 1152
[39][TOP]
>UniRef100_UPI00005A0B16 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
(RPB1) isoform 2 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B16
Length = 1922
Score = 172 bits (435), Expect = 2e-41
Identities = 94/178 (52%), Positives = 118/178 (66%)
Frame = +2
Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
SDL P K+V GV+ L + ++ D+ LS AQ
Sbjct: 1002 SDLHPIKVVEGVKELSKKLVIVNGDDP---------------------------LSRQAQ 1034
Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
NATLLF +H+R++L S+ + E RL+ +AF WLL EIE++F QA+A GEMVGA AAQS
Sbjct: 1035 ENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQS 1094
Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN+SK+ KTPSL V+L G + DAE
Sbjct: 1095 LGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSARDAE 1152
[40][TOP]
>UniRef100_UPI0001B7A25C UPI0001B7A25C related cluster n=1 Tax=Rattus norvegicus
RepID=UPI0001B7A25C
Length = 1968
Score = 172 bits (435), Expect = 2e-41
Identities = 94/178 (52%), Positives = 118/178 (66%)
Frame = +2
Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
SDL P K+V GV+ L + ++ D+ LS AQ
Sbjct: 1004 SDLHPIKVVEGVKELSKKLVIVNGDDP---------------------------LSRQAQ 1036
Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
NATLLF +H+R++L S+ + E RL+ +AF WLL EIE++F QA+A GEMVGA AAQS
Sbjct: 1037 ENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQS 1096
Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN+SK+ KTPSL V+L G + DAE
Sbjct: 1097 LGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSARDAE 1154
[41][TOP]
>UniRef100_UPI0001B7A25B UPI0001B7A25B related cluster n=1 Tax=Rattus norvegicus
RepID=UPI0001B7A25B
Length = 1932
Score = 172 bits (435), Expect = 2e-41
Identities = 94/178 (52%), Positives = 118/178 (66%)
Frame = +2
Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
SDL P K+V GV+ L + ++ D+ LS AQ
Sbjct: 1002 SDLHPIKVVEGVKELSKKLVIVNGDDP---------------------------LSRQAQ 1034
Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
NATLLF +H+R++L S+ + E RL+ +AF WLL EIE++F QA+A GEMVGA AAQS
Sbjct: 1035 ENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQS 1094
Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN+SK+ KTPSL V+L G + DAE
Sbjct: 1095 LGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSARDAE 1152
[42][TOP]
>UniRef100_UPI0000DA33D8 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
(RPB1) n=1 Tax=Rattus norvegicus RepID=UPI0000DA33D8
Length = 1970
Score = 172 bits (435), Expect = 2e-41
Identities = 94/178 (52%), Positives = 118/178 (66%)
Frame = +2
Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
SDL P K+V GV+ L + ++ D+ LS AQ
Sbjct: 1002 SDLHPIKVVEGVKELSKKLVIVNGDDP---------------------------LSRQAQ 1034
Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
NATLLF +H+R++L S+ + E RL+ +AF WLL EIE++F QA+A GEMVGA AAQS
Sbjct: 1035 ENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQS 1094
Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN+SK+ KTPSL V+L G + DAE
Sbjct: 1095 LGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSARDAE 1152
[43][TOP]
>UniRef100_UPI0001951285 220 kDa DNA-directed RNA polymerase polypeptide A n=1 Tax=Canis lupus
familiaris RepID=UPI0001951285
Length = 1969
Score = 172 bits (435), Expect = 2e-41
Identities = 94/178 (52%), Positives = 118/178 (66%)
Frame = +2
Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
SDL P K+V GV+ L + ++ D+ LS AQ
Sbjct: 1002 SDLHPIKVVEGVKELSKKLVIVNGDDP---------------------------LSRQAQ 1034
Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
NATLLF +H+R++L S+ + E RL+ +AF WLL EIE++F QA+A GEMVGA AAQS
Sbjct: 1035 ENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQS 1094
Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN+SK+ KTPSL V+L G + DAE
Sbjct: 1095 LGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSARDAE 1152
[44][TOP]
>UniRef100_O08847 DNA-directed RNA polymerase n=1 Tax=Mus musculus RepID=O08847_MOUSE
Length = 1966
Score = 172 bits (435), Expect = 2e-41
Identities = 94/178 (52%), Positives = 118/178 (66%)
Frame = +2
Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
SDL P K+V GV+ L + ++ D+ LS AQ
Sbjct: 1002 SDLHPIKVVEGVKELSKKLVIVNGDDP---------------------------LSRQAQ 1034
Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
NATLLF +H+R++L S+ + E RL+ +AF WLL EIE++F QA+A GEMVGA AAQS
Sbjct: 1035 ENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQS 1094
Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN+SK+ KTPSL V+L G + DAE
Sbjct: 1095 LGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSARDAE 1152
[45][TOP]
>UniRef100_Q84KP6 DNA-directed RNA polymerase n=1 Tax=Cyanidioschyzon merolae
RepID=Q84KP6_CYAME
Length = 1819
Score = 172 bits (435), Expect = 2e-41
Identities = 96/170 (56%), Positives = 113/170 (66%)
Frame = +2
Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
SDL P +I++GV +LL R V+ D+ ELS AQ
Sbjct: 993 SDLHPRQIIQGVRVLLQRCVVVPGDD---------------------------ELSREAQ 1025
Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
NA LLF HVRA LA+K VL HRL KAF WLL EIE RF +A A GEMVGA AAQS
Sbjct: 1026 RNAVLLFAAHVRAELATKRVLQIHRLNSKAFAWLLGEIETRFVRARATPGEMVGAVAAQS 1085
Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLR 511
+GEPATQMTLNTFH+AGVSAKNVTLGVPRL+E+INV+++ KTPS+ VYL+
Sbjct: 1086 LGEPATQMTLNTFHFAGVSAKNVTLGVPRLKELINVARQAKTPSVTVYLK 1135
[46][TOP]
>UniRef100_A9QMG4 RNA polymerase 2 (Fragment) n=1 Tax=Pelodera strongyloides
dermatitica RepID=A9QMG4_9PELO
Length = 478
Score = 172 bits (435), Expect = 2e-41
Identities = 94/178 (52%), Positives = 117/178 (65%)
Frame = +2
Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
S L+P K+V GV+ L H+ ++ D+ +S+ AQ
Sbjct: 193 SSLNPLKVVSGVKELSHKLVIVCGDD---------------------------RISKQAQ 225
Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
NATLL + +R++L SK + +HRL + F WLL EIE+RF QA+A GEMVGA AAQS
Sbjct: 226 YNATLLMNILIRSTLCSKQMAEKHRLNEEGFEWLLGEIEHRFNQAIAQPGEMVGALAAQS 285
Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
+GEPATQMTLNTFH+AGVSAKNVTLGVPRL+EIINVSK KTPSL V+L+G A DAE
Sbjct: 286 LGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSKSPKTPSLTVFLQGGAAKDAE 343
[47][TOP]
>UniRef100_A9QMF0 DNA-directed RNA polymerase (Fragment) n=1 Tax=Pelodera
strongyloides dermatitica RepID=A9QMF0_9PELO
Length = 633
Score = 172 bits (435), Expect = 2e-41
Identities = 94/178 (52%), Positives = 117/178 (65%)
Frame = +2
Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
S L+P K+V GV+ L H+ ++ D+ +S+ AQ
Sbjct: 212 SSLNPLKVVSGVKELSHKLVIVCGDD---------------------------RISKQAQ 244
Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
NATLL + +R++L SK + +HRL + F WLL EIE+RF QA+A GEMVGA AAQS
Sbjct: 245 YNATLLMNILIRSTLCSKQMAEKHRLNEEGFEWLLGEIEHRFNQAIAQPGEMVGALAAQS 304
Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
+GEPATQMTLNTFH+AGVSAKNVTLGVPRL+EIINVSK KTPSL V+L+G A DAE
Sbjct: 305 LGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSKSPKTPSLTVFLQGGAAKDAE 362
[48][TOP]
>UniRef100_A6NN93 DNA-directed RNA polymerase n=1 Tax=Homo sapiens RepID=A6NN93_HUMAN
Length = 1970
Score = 172 bits (435), Expect = 2e-41
Identities = 94/178 (52%), Positives = 118/178 (66%)
Frame = +2
Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
SDL P K+V GV+ L + ++ D+ LS AQ
Sbjct: 1002 SDLHPIKVVEGVKELSKKLVIVNGDDP---------------------------LSRQAQ 1034
Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
NATLLF +H+R++L S+ + E RL+ +AF WLL EIE++F QA+A GEMVGA AAQS
Sbjct: 1035 ENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQS 1094
Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN+SK+ KTPSL V+L G + DAE
Sbjct: 1095 LGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSARDAE 1152
[49][TOP]
>UniRef100_P08775 DNA-directed RNA polymerase II subunit RPB1 n=1 Tax=Mus musculus
RepID=RPB1_MOUSE
Length = 1970
Score = 172 bits (435), Expect = 2e-41
Identities = 94/178 (52%), Positives = 118/178 (66%)
Frame = +2
Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
SDL P K+V GV+ L + ++ D+ LS AQ
Sbjct: 1002 SDLHPIKVVEGVKELSKKLVIVNGDDP---------------------------LSRQAQ 1034
Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
NATLLF +H+R++L S+ + E RL+ +AF WLL EIE++F QA+A GEMVGA AAQS
Sbjct: 1035 ENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQS 1094
Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN+SK+ KTPSL V+L G + DAE
Sbjct: 1095 LGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSARDAE 1152
[50][TOP]
>UniRef100_P24928 DNA-directed RNA polymerase II subunit RPB1 n=2 Tax=Euarchontoglires
RepID=RPB1_HUMAN
Length = 1970
Score = 172 bits (435), Expect = 2e-41
Identities = 94/178 (52%), Positives = 118/178 (66%)
Frame = +2
Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
SDL P K+V GV+ L + ++ D+ LS AQ
Sbjct: 1002 SDLHPIKVVEGVKELSKKLVIVNGDDP---------------------------LSRQAQ 1034
Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
NATLLF +H+R++L S+ + E RL+ +AF WLL EIE++F QA+A GEMVGA AAQS
Sbjct: 1035 ENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQS 1094
Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN+SK+ KTPSL V+L G + DAE
Sbjct: 1095 LGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSARDAE 1152
[51][TOP]
>UniRef100_B4MAN9 DNA-directed RNA polymerase n=1 Tax=Drosophila virilis
RepID=B4MAN9_DROVI
Length = 1889
Score = 171 bits (434), Expect = 2e-41
Identities = 94/178 (52%), Positives = 119/178 (66%)
Frame = +2
Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
+DLSP +++RGV+ LL R ++T ++ +S+ A
Sbjct: 994 TDLSPMRVIRGVKGLLERCVIVTGND---------------------------RISKQAN 1026
Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
NATLLFQ +R++L +K V E RL+ +AF WL+ EIE RFQQA A GEMVGA AAQS
Sbjct: 1027 ENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLIGEIETRFQQAQANPGEMVGALAAQS 1086
Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
+GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN+SK+ K PSL V+L G A DAE
Sbjct: 1087 LGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGGAARDAE 1144
[52][TOP]
>UniRef100_B4L732 DNA-directed RNA polymerase n=1 Tax=Drosophila mojavensis
RepID=B4L732_DROMO
Length = 1889
Score = 171 bits (434), Expect = 2e-41
Identities = 94/178 (52%), Positives = 119/178 (66%)
Frame = +2
Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
+DLSP +++RGV+ LL R ++T ++ +S+ A
Sbjct: 994 TDLSPMRVIRGVKGLLERCVIVTGND---------------------------RISKQAN 1026
Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
NATLLFQ +R++L +K V E RL+ +AF WL+ EIE RFQQA A GEMVGA AAQS
Sbjct: 1027 ENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLIGEIETRFQQAQANPGEMVGALAAQS 1086
Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
+GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN+SK+ K PSL V+L G A DAE
Sbjct: 1087 LGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGGAARDAE 1144
[53][TOP]
>UniRef100_B4JXA6 DNA-directed RNA polymerase n=1 Tax=Drosophila grimshawi
RepID=B4JXA6_DROGR
Length = 1889
Score = 171 bits (434), Expect = 2e-41
Identities = 94/178 (52%), Positives = 119/178 (66%)
Frame = +2
Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
+DLSP +++RGV LL+R ++T ++ +S+ A
Sbjct: 994 TDLSPMRVIRGVSDLLNRCVIVTGND---------------------------RISKQAN 1026
Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
NATLLFQ +R++L +K V E RL+ +AF WL+ EIE RFQQA A GEMVGA AAQS
Sbjct: 1027 ENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLIGEIETRFQQAQANPGEMVGALAAQS 1086
Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
+GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN+SK+ K PSL V+L G A DAE
Sbjct: 1087 LGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGGAARDAE 1144
[54][TOP]
>UniRef100_P91819 DNA-directed RNA polymerase (Fragment) n=1 Tax=Zeldia punctata
RepID=P91819_ZELPU
Length = 629
Score = 171 bits (433), Expect = 3e-41
Identities = 96/177 (54%), Positives = 117/177 (66%)
Frame = +2
Query: 5 DLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQL 184
DL+P ++V GV L ++ V+ S ED +S+ AQ
Sbjct: 205 DLNPLRVVEGVREL-NKKLVIVSGED--------------------------RISKQAQY 237
Query: 185 NATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSI 364
NATLL + +R++L SK V H+L +AF W+L EIE RF QA+A GEMVGA AAQS+
Sbjct: 238 NATLLMNILLRSTLCSKQVAKVHKLNTEAFEWILGEIETRFNQAIAQPGEMVGALAAQSL 297
Query: 365 GEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSKR KTPSL ++L+G A DAE
Sbjct: 298 GEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKRPKTPSLTIFLQGQAAKDAE 354
[55][TOP]
>UniRef100_A9QMF6 RNA polymerase 2 (Fragment) n=1 Tax=Pristionchus pacificus
RepID=A9QMF6_PRIPA
Length = 583
Score = 171 bits (433), Expect = 3e-41
Identities = 87/124 (70%), Positives = 102/124 (82%)
Frame = +2
Query: 164 LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 343
+S+ AQ NATLL + VR++L SK + +HRL +AF WLL EIE RFQQA+A GEMVG
Sbjct: 201 ISKQAQYNATLLMNILVRSTLCSKQLAEKHRLNSEAFEWLLGEIETRFQQAIAQPGEMVG 260
Query: 344 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 523
A AAQS+GEPATQMTLNTFH+AGVSAKNVTLGVPRL+EIIN+SK+ KTPSL VYL+G A
Sbjct: 261 ALAAQSLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINISKQPKTPSLTVYLQGAAA 320
Query: 524 HDAE 535
DAE
Sbjct: 321 KDAE 324
[56][TOP]
>UniRef100_Q1WKU2 Putative RNA polymerase II 215 kD subunit (Fragment) n=1
Tax=Drosophila simulans RepID=Q1WKU2_DROSI
Length = 746
Score = 171 bits (432), Expect = 4e-41
Identities = 93/178 (52%), Positives = 119/178 (66%)
Frame = +2
Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
+DLSP ++++GV+ LL R ++T ++ +S+ A
Sbjct: 136 TDLSPIRVIKGVKTLLERCVIVTGND---------------------------RISKQAN 168
Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
NATLLFQ +R++L +K V E RL+ +AF WL+ EIE RFQQA A GEMVGA AAQS
Sbjct: 169 ENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLVGEIETRFQQAQANPGEMVGALAAQS 228
Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
+GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN+SK+ K PSL V+L G A DAE
Sbjct: 229 LGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGGAARDAE 286
[57][TOP]
>UniRef100_B4IK28 DNA-directed RNA polymerase n=1 Tax=Drosophila sechellia
RepID=B4IK28_DROSE
Length = 1887
Score = 171 bits (432), Expect = 4e-41
Identities = 93/178 (52%), Positives = 119/178 (66%)
Frame = +2
Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
+DLSP ++++GV+ LL R ++T ++ +S+ A
Sbjct: 994 TDLSPIRVIKGVKTLLERCVIVTGND---------------------------RISKQAN 1026
Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
NATLLFQ +R++L +K V E RL+ +AF WL+ EIE RFQQA A GEMVGA AAQS
Sbjct: 1027 ENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLVGEIETRFQQAQANPGEMVGALAAQS 1086
Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
+GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN+SK+ K PSL V+L G A DAE
Sbjct: 1087 LGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGGAARDAE 1144
[58][TOP]
>UniRef100_A9YGC1 RNA polymerase II 215 kD subunit (Fragment) n=2 Tax=melanogaster
subgroup RepID=A9YGC1_DROME
Length = 247
Score = 171 bits (432), Expect = 4e-41
Identities = 93/178 (52%), Positives = 119/178 (66%)
Frame = +2
Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
+DLSP ++++GV+ LL R ++T ++ +S+ A
Sbjct: 51 TDLSPIRVIKGVKTLLERCVIVTGND---------------------------RISKQAN 83
Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
NATLLFQ +R++L +K V E RL+ +AF WL+ EIE RFQQA A GEMVGA AAQS
Sbjct: 84 ENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLVGEIETRFQQAQANPGEMVGALAAQS 143
Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
+GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN+SK+ K PSL V+L G A DAE
Sbjct: 144 LGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGGAARDAE 201
[59][TOP]
>UniRef100_A9UNH9 DNA-directed RNA polymerase n=1 Tax=Drosophila melanogaster
RepID=A9UNH9_DROME
Length = 1887
Score = 171 bits (432), Expect = 4e-41
Identities = 93/178 (52%), Positives = 119/178 (66%)
Frame = +2
Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
+DLSP ++++GV+ LL R ++T ++ +S+ A
Sbjct: 994 TDLSPIRVIKGVKTLLERCVIVTGND---------------------------RISKQAN 1026
Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
NATLLFQ +R++L +K V E RL+ +AF WL+ EIE RFQQA A GEMVGA AAQS
Sbjct: 1027 ENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLVGEIETRFQQAQANPGEMVGALAAQS 1086
Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
+GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN+SK+ K PSL V+L G A DAE
Sbjct: 1087 LGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGGAARDAE 1144
[60][TOP]
>UniRef100_P04052 DNA-directed RNA polymerase II subunit RPB1 n=2 Tax=Drosophila
melanogaster RepID=RPB1_DROME
Length = 1887
Score = 171 bits (432), Expect = 4e-41
Identities = 93/178 (52%), Positives = 119/178 (66%)
Frame = +2
Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
+DLSP ++++GV+ LL R ++T ++ +S+ A
Sbjct: 994 TDLSPIRVIKGVKTLLERCVIVTGND---------------------------RISKQAN 1026
Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
NATLLFQ +R++L +K V E RL+ +AF WL+ EIE RFQQA A GEMVGA AAQS
Sbjct: 1027 ENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLVGEIETRFQQAQANPGEMVGALAAQS 1086
Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
+GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN+SK+ K PSL V+L G A DAE
Sbjct: 1087 LGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGGAARDAE 1144
[61][TOP]
>UniRef100_UPI000179348F PREDICTED: similar to DNA-directed RNA polymerase II subunit RPB1
(RNA polymerase II subunit B1) (DNA-directed RNA
polymerase III largest subunit) n=1 Tax=Acyrthosiphon
pisum RepID=UPI000179348F
Length = 1862
Score = 170 bits (431), Expect = 5e-41
Identities = 97/178 (54%), Positives = 120/178 (67%)
Frame = +2
Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
+DL+P K+V GV+ LL + V+ + ED ELS+ A
Sbjct: 995 TDLNPIKVVNGVKKLLDKC-VIVAGED--------------------------ELSKKAN 1027
Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
NATLLFQ VR++L +K+V RL+ +AF WL+ EIENRF+QA A GEMVGA AAQS
Sbjct: 1028 KNATLLFQCLVRSTLCTKLVSENFRLSSEAFEWLVGEIENRFKQAQAQPGEMVGALAAQS 1087
Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
+GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN+SK+ K PSL V+L G A DAE
Sbjct: 1088 LGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGAAARDAE 1145
[62][TOP]
>UniRef100_UPI00016E658E UPI00016E658E related cluster n=1 Tax=Takifugu rubripes
RepID=UPI00016E658E
Length = 1628
Score = 170 bits (431), Expect = 5e-41
Identities = 93/178 (52%), Positives = 116/178 (65%)
Frame = +2
Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
+DLSP ++V G L + ++ D+ LS+ AQ
Sbjct: 1000 TDLSPLRVVEGTHDLSKKLVIVNGDDP---------------------------LSKQAQ 1032
Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
NATLLF +H+R++L SK + E RL+ +AF WLL EIE +F ++A GEMVGA AAQS
Sbjct: 1033 QNATLLFNIHLRSTLCSKRMTEEFRLSTEAFDWLLGEIETKFNHSIAHPGEMVGALAAQS 1092
Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN+SKR KTPSL V+L G A DAE
Sbjct: 1093 LGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKRPKTPSLTVFLLGQAARDAE 1150
[63][TOP]
>UniRef100_Q9XZU9 DNA-directed RNA polymerase n=1 Tax=Drosophila subobscura
RepID=Q9XZU9_DROSU
Length = 1889
Score = 170 bits (431), Expect = 5e-41
Identities = 93/178 (52%), Positives = 118/178 (66%)
Frame = +2
Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
+DLSP ++++GV+ LL R ++T + +S+ A
Sbjct: 994 TDLSPMRVIKGVKTLLERCVIVTGAD---------------------------RISKQAN 1026
Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
NATLLFQ +R++L +K V E RL+ +AF WL+ EIE RFQQA A GEMVGA AAQS
Sbjct: 1027 ENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLIGEIETRFQQAQANPGEMVGALAAQS 1086
Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
+GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN+SK+ K PSL V+L G A DAE
Sbjct: 1087 LGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGGAARDAE 1144
[64][TOP]
>UniRef100_Q9XZU8 DNA-directed RNA polymerase (Fragment) n=1 Tax=Drosophila
pseudoobscura pseudoobscura RepID=Q9XZU8_DROPS
Length = 1811
Score = 170 bits (431), Expect = 5e-41
Identities = 93/178 (52%), Positives = 118/178 (66%)
Frame = +2
Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
+DLSP ++++GV+ LL R ++T + +S+ A
Sbjct: 916 TDLSPMRVIKGVKTLLERCVIVTGAD---------------------------RISKQAN 948
Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
NATLLFQ +R++L +K V E RL+ +AF WL+ EIE RFQQA A GEMVGA AAQS
Sbjct: 949 ENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLIGEIETRFQQAQANPGEMVGALAAQS 1008
Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
+GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN+SK+ K PSL V+L G A DAE
Sbjct: 1009 LGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGGAARDAE 1066
[65][TOP]
>UniRef100_Q9XZS2 DNA-directed RNA polymerase n=1 Tax=Drosophila madeirensis
RepID=Q9XZS2_DROMD
Length = 1889
Score = 170 bits (431), Expect = 5e-41
Identities = 93/178 (52%), Positives = 118/178 (66%)
Frame = +2
Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
+DLSP ++++GV+ LL R ++T + +S+ A
Sbjct: 994 TDLSPMRVIKGVKTLLERCVIVTGAD---------------------------RISKQAN 1026
Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
NATLLFQ +R++L +K V E RL+ +AF WL+ EIE RFQQA A GEMVGA AAQS
Sbjct: 1027 ENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLIGEIETRFQQAQANPGEMVGALAAQS 1086
Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
+GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN+SK+ K PSL V+L G A DAE
Sbjct: 1087 LGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGGAARDAE 1144
[66][TOP]
>UniRef100_Q9XZS1 DNA-directed RNA polymerase n=1 Tax=Drosophila guanche
RepID=Q9XZS1_DROGU
Length = 1889
Score = 170 bits (431), Expect = 5e-41
Identities = 93/178 (52%), Positives = 118/178 (66%)
Frame = +2
Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
+DLSP ++++GV+ LL R ++T + +S+ A
Sbjct: 994 TDLSPMRVIKGVKTLLERCVIVTGAD---------------------------RISKQAN 1026
Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
NATLLFQ +R++L +K V E RL+ +AF WL+ EIE RFQQA A GEMVGA AAQS
Sbjct: 1027 ENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLIGEIETRFQQAQANPGEMVGALAAQS 1086
Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
+GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN+SK+ K PSL V+L G A DAE
Sbjct: 1087 LGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGGAARDAE 1144
[67][TOP]
>UniRef100_Q9NJI9 RNA polymerase II largest subunit (Fragment) n=1 Tax=Tanystylum
orbiculare RepID=Q9NJI9_9CHEL
Length = 256
Score = 170 bits (431), Expect = 5e-41
Identities = 97/178 (54%), Positives = 116/178 (65%)
Frame = +2
Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
+DLSP +++ GVE L+ + ++ D+ LS A
Sbjct: 10 TDLSPLRVIHGVEDLVKKLVIVPGDD---------------------------RLSLQAN 42
Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
NATLLFQ +R++L SK V E RL+ +AF WLL EI+ RFQQA GEMVGA AAQS
Sbjct: 43 ENATLLFQALLRSTLCSKKVAEEFRLSTEAFDWLLGEIDTRFQQAQVMPGEMVGALAAQS 102
Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ KTPSL V+L G A DAE
Sbjct: 103 LGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKKPKTPSLTVFLTGAAARDAE 160
[68][TOP]
>UniRef100_Q9BNQ3 RNA polymerase II largest subunit (Fragment) n=1 Tax=Peripatus sp.
Per2 RepID=Q9BNQ3_9BILA
Length = 300
Score = 170 bits (431), Expect = 5e-41
Identities = 95/178 (53%), Positives = 115/178 (64%)
Frame = +2
Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
SDL+P +++ GV L R ++ ++ +S+ AQ
Sbjct: 10 SDLNPLRVIEGVRDLSKRLIIVPGED---------------------------RISKQAQ 42
Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
NATLL + VRA+L SK V EH+L+ +AF WLL EIE RF QA GEMVGA AAQS
Sbjct: 43 ENATLLMNILVRATLCSKRVTKEHKLSTEAFEWLLGEIETRFAQAQGQPGEMVGALAAQS 102
Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIIN+SK+ KTPSL V+L G A DAE
Sbjct: 103 LGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINISKKPKTPSLTVFLTGQAARDAE 160
[69][TOP]
>UniRef100_Q29IN2 DNA-directed RNA polymerase n=1 Tax=Drosophila pseudoobscura
pseudoobscura RepID=Q29IN2_DROPS
Length = 1889
Score = 170 bits (431), Expect = 5e-41
Identities = 93/178 (52%), Positives = 118/178 (66%)
Frame = +2
Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
+DLSP ++++GV+ LL R ++T + +S+ A
Sbjct: 994 TDLSPMRVIKGVKTLLERCVIVTGAD---------------------------RISKQAN 1026
Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
NATLLFQ +R++L +K V E RL+ +AF WL+ EIE RFQQA A GEMVGA AAQS
Sbjct: 1027 ENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLIGEIETRFQQAQANPGEMVGALAAQS 1086
Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
+GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN+SK+ K PSL V+L G A DAE
Sbjct: 1087 LGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGGAARDAE 1144
[70][TOP]
>UniRef100_Q25203 DNA-directed RNA polymerase (Fragment) n=1 Tax=Ilyanassa obsoleta
RepID=Q25203_9CAEN
Length = 1343
Score = 170 bits (431), Expect = 5e-41
Identities = 96/178 (53%), Positives = 113/178 (63%)
Frame = +2
Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
SDL P +V GV L R ++ ++ +S+ A
Sbjct: 916 SDLDPINVVSGVRDLCQRLTIVEGED---------------------------MISKQAN 948
Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
NATLL + +R++L +K V EHRL+ AF WLL EIE RFQQA A GEMVGA AAQS
Sbjct: 949 ENATLLMKCLIRSTLCAKRVAEEHRLSEDAFNWLLGEIETRFQQAQAHPGEMVGALAAQS 1008
Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIIN+SK+ KTPSL VYL G A DAE
Sbjct: 1009 LGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINISKKPKTPSLTVYLNGPAARDAE 1066
[71][TOP]
>UniRef100_Q1WKU4 Putative RNA polymerase II 215 kD subunit (Fragment) n=1
Tax=Drosophila erecta RepID=Q1WKU4_DROER
Length = 760
Score = 170 bits (431), Expect = 5e-41
Identities = 93/178 (52%), Positives = 119/178 (66%)
Frame = +2
Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
+DLSP ++++GV+ LL R ++T ++ +S+ A
Sbjct: 136 TDLSPMRVIKGVKGLLERCVIVTGND---------------------------RISKQAN 168
Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
NATLLFQ +R++L +K V E RL+ +AF WL+ EIE RFQQA A GEMVGA AAQS
Sbjct: 169 ENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLIGEIETRFQQAQANPGEMVGALAAQS 228
Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
+GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN+SK+ K PSL V+L G A DAE
Sbjct: 229 LGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGGAARDAE 286
[72][TOP]
>UniRef100_Q1WKU3 Putative RNA polymerase II 215 kD subunit (Fragment) n=1
Tax=Drosophila orena RepID=Q1WKU3_DROOR
Length = 750
Score = 170 bits (431), Expect = 5e-41
Identities = 93/178 (52%), Positives = 119/178 (66%)
Frame = +2
Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
+DLSP ++++GV+ LL R ++T ++ +S+ A
Sbjct: 136 TDLSPMRVIKGVKGLLERCVIVTGND---------------------------RISKQAN 168
Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
NATLLFQ +R++L +K V E RL+ +AF WL+ EIE RFQQA A GEMVGA AAQS
Sbjct: 169 ENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLIGEIETRFQQAQANPGEMVGALAAQS 228
Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
+GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN+SK+ K PSL V+L G A DAE
Sbjct: 229 LGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGGAARDAE 286
[73][TOP]
>UniRef100_Q1WKU0 Putative RNA polymerase II 215 kD subunit (Fragment) n=2
Tax=melanogaster subgroup RepID=Q1WKU0_DROYA
Length = 766
Score = 170 bits (431), Expect = 5e-41
Identities = 93/178 (52%), Positives = 119/178 (66%)
Frame = +2
Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
+DLSP ++++GV+ LL R ++T ++ +S+ A
Sbjct: 136 TDLSPMRVIKGVKGLLERCVIVTGND---------------------------RISKQAN 168
Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
NATLLFQ +R++L +K V E RL+ +AF WL+ EIE RFQQA A GEMVGA AAQS
Sbjct: 169 ENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLIGEIETRFQQAQANPGEMVGALAAQS 228
Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
+GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN+SK+ K PSL V+L G A DAE
Sbjct: 229 LGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGGAARDAE 286
[74][TOP]
>UniRef100_B4PY98 DNA-directed RNA polymerase n=1 Tax=Drosophila yakuba
RepID=B4PY98_DROYA
Length = 1889
Score = 170 bits (431), Expect = 5e-41
Identities = 93/178 (52%), Positives = 119/178 (66%)
Frame = +2
Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
+DLSP ++++GV+ LL R ++T ++ +S+ A
Sbjct: 994 TDLSPMRVIKGVKGLLERCVIVTGND---------------------------RISKQAN 1026
Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
NATLLFQ +R++L +K V E RL+ +AF WL+ EIE RFQQA A GEMVGA AAQS
Sbjct: 1027 ENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLIGEIETRFQQAQANPGEMVGALAAQS 1086
Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
+GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN+SK+ K PSL V+L G A DAE
Sbjct: 1087 LGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGGAARDAE 1144
[75][TOP]
>UniRef100_B4NDK9 DNA-directed RNA polymerase n=1 Tax=Drosophila willistoni
RepID=B4NDK9_DROWI
Length = 1890
Score = 170 bits (431), Expect = 5e-41
Identities = 94/178 (52%), Positives = 118/178 (66%)
Frame = +2
Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
+DLSP ++++GV LL R ++T ++ +S+ A
Sbjct: 994 TDLSPMRVIKGVRGLLERCVIVTGND---------------------------RISKQAN 1026
Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
NATLLFQ VR++L +K V E RL+ +AF WL+ EIE RFQQA A GEMVGA AAQS
Sbjct: 1027 ENATLLFQCLVRSTLCTKYVSEEFRLSTEAFEWLIGEIETRFQQAQANPGEMVGALAAQS 1086
Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
+GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN+SK+ K PSL V+L G A DAE
Sbjct: 1087 LGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGGAARDAE 1144
[76][TOP]
>UniRef100_B4H2R8 DNA-directed RNA polymerase n=1 Tax=Drosophila persimilis
RepID=B4H2R8_DROPE
Length = 1804
Score = 170 bits (431), Expect = 5e-41
Identities = 93/178 (52%), Positives = 118/178 (66%)
Frame = +2
Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
+DLSP ++++GV+ LL R ++T + +S+ A
Sbjct: 994 TDLSPMRVIKGVKTLLERCVIVTGAD---------------------------RISKQAN 1026
Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
NATLLFQ +R++L +K V E RL+ +AF WL+ EIE RFQQA A GEMVGA AAQS
Sbjct: 1027 ENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLIGEIETRFQQAQANPGEMVGALAAQS 1086
Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
+GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN+SK+ K PSL V+L G A DAE
Sbjct: 1087 LGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGGAARDAE 1144
[77][TOP]
>UniRef100_B3NUC1 DNA-directed RNA polymerase n=1 Tax=Drosophila erecta
RepID=B3NUC1_DROER
Length = 1889
Score = 170 bits (431), Expect = 5e-41
Identities = 93/178 (52%), Positives = 119/178 (66%)
Frame = +2
Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
+DLSP ++++GV+ LL R ++T ++ +S+ A
Sbjct: 994 TDLSPMRVIKGVKGLLERCVIVTGND---------------------------RISKQAN 1026
Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
NATLLFQ +R++L +K V E RL+ +AF WL+ EIE RFQQA A GEMVGA AAQS
Sbjct: 1027 ENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLIGEIETRFQQAQANPGEMVGALAAQS 1086
Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
+GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN+SK+ K PSL V+L G A DAE
Sbjct: 1087 LGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGGAARDAE 1144
[78][TOP]
>UniRef100_B3MQ29 DNA-directed RNA polymerase n=1 Tax=Drosophila ananassae
RepID=B3MQ29_DROAN
Length = 1889
Score = 170 bits (431), Expect = 5e-41
Identities = 93/178 (52%), Positives = 119/178 (66%)
Frame = +2
Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
+DLSP ++++GV+ LL R ++T ++ +S+ A
Sbjct: 994 TDLSPMRVIKGVKGLLERCVIVTGND---------------------------RISKQAN 1026
Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
NATLLFQ +R++L +K V E RL+ +AF WL+ EIE RFQQA A GEMVGA AAQS
Sbjct: 1027 ENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLIGEIETRFQQAQANPGEMVGALAAQS 1086
Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
+GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN+SK+ K PSL V+L G A DAE
Sbjct: 1087 LGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGGAARDAE 1144
[79][TOP]
>UniRef100_UPI0000F2BF13 PREDICTED: similar to RNA polymerase II isoform 2 n=1 Tax=Monodelphis
domestica RepID=UPI0000F2BF13
Length = 1932
Score = 170 bits (430), Expect = 7e-41
Identities = 96/178 (53%), Positives = 119/178 (66%)
Frame = +2
Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
SDL P K+V GV+ L + V+ + ED LS AQ
Sbjct: 1002 SDLHPIKVVDGVKELSKKL-VIVNGEDP--------------------------LSRQAQ 1034
Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
NATLLF +H+R++L S+ + E RL+ +AF WLL EIE++F QA+A GEMVGA AAQS
Sbjct: 1035 ENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQS 1094
Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN+SK+ KTPSL V+L G + DAE
Sbjct: 1095 LGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSARDAE 1152
[80][TOP]
>UniRef100_UPI0000F2BF12 PREDICTED: similar to RNA polymerase II isoform 1 n=1 Tax=Monodelphis
domestica RepID=UPI0000F2BF12
Length = 1970
Score = 170 bits (430), Expect = 7e-41
Identities = 96/178 (53%), Positives = 119/178 (66%)
Frame = +2
Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
SDL P K+V GV+ L + V+ + ED LS AQ
Sbjct: 1002 SDLHPIKVVDGVKELSKKL-VIVNGEDP--------------------------LSRQAQ 1034
Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
NATLLF +H+R++L S+ + E RL+ +AF WLL EIE++F QA+A GEMVGA AAQS
Sbjct: 1035 ENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQS 1094
Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN+SK+ KTPSL V+L G + DAE
Sbjct: 1095 LGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSARDAE 1152
[81][TOP]
>UniRef100_A9QMH1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Acrobeles maximus
RepID=A9QMH1_9BILA
Length = 616
Score = 170 bits (430), Expect = 7e-41
Identities = 95/177 (53%), Positives = 116/177 (65%)
Frame = +2
Query: 5 DLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQL 184
DL+P +++ GV L + ++ S ED +S+ AQ
Sbjct: 212 DLNPVRVIEGVRELSKKL-IIVSGED--------------------------RISKQAQY 244
Query: 185 NATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSI 364
NATLL + +R++L SK V H+L +AF W+L EIE RF QA+A GEMVGA AAQS+
Sbjct: 245 NATLLMNILLRSTLCSKQVAKVHKLNTEAFEWILGEIETRFNQAIAQPGEMVGALAAQSL 304
Query: 365 GEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSKR KTPSL V+L+G A DAE
Sbjct: 305 GEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKRPKTPSLTVFLQGQAAKDAE 361
[82][TOP]
>UniRef100_A9QMG9 DNA-directed RNA polymerase (Fragment) n=1 Tax=Poikilolaimus
regenfussi RepID=A9QMG9_9BILA
Length = 620
Score = 170 bits (430), Expect = 7e-41
Identities = 86/124 (69%), Positives = 102/124 (82%)
Frame = +2
Query: 164 LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 343
+S+ AQ NATLL + +R++L SK V +HRL ++AF WL+ EIE RF QA+A GEMVG
Sbjct: 230 ISKQAQFNATLLMNILLRSTLCSKQVAEKHRLNQEAFEWLIGEIETRFXQAIAQPGEMVG 289
Query: 344 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 523
A AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ KTPSL V+L+G A
Sbjct: 290 ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKQPKTPSLTVFLQGAAA 349
Query: 524 HDAE 535
DAE
Sbjct: 350 RDAE 353
[83][TOP]
>UniRef100_Q23699 DNA-directed RNA polymerase (Fragment) n=1 Tax=Crassostrea gigas
RepID=Q23699_CRAGI
Length = 1340
Score = 169 bits (429), Expect = 9e-41
Identities = 97/178 (54%), Positives = 115/178 (64%)
Frame = +2
Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
+DL P K+V GVE L R V+ + LS A
Sbjct: 913 TDLHPIKVVEGVEDLCKRLIVVAGGD---------------------------RLSIQAN 945
Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
NATLLF+ +R++L +K V E RL+ +AF WL+ E+E+RFQQA A GEMVGA AAQS
Sbjct: 946 ANATLLFKCLIRSTLCAKRVTEEFRLSSEAFEWLIGEVESRFQQAQAHPGEMVGALAAQS 1005
Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIIN+SK+ KTPSL VYL G A DAE
Sbjct: 1006 LGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINISKKPKTPSLTVYLIGQAARDAE 1063
[84][TOP]
>UniRef100_A9QMG8 RNA polymerase 2 (Fragment) n=1 Tax=rhabditoid sp. PDL15
RepID=A9QMG8_9BILA
Length = 587
Score = 169 bits (429), Expect = 9e-41
Identities = 87/124 (70%), Positives = 102/124 (82%)
Frame = +2
Query: 164 LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 343
+S+ AQ NATLL + +R++L SK V ++RL +AF WLL EIE RFQQA+A GEMVG
Sbjct: 222 ISKQAQYNATLLMNILLRSTLCSKQVAEKYRLNSEAFEWLLGEIETRFQQAIAQPGEMVG 281
Query: 344 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 523
A AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ KTPSL V+L+G A
Sbjct: 282 ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKQPKTPSLTVFLQGAAA 341
Query: 524 HDAE 535
DAE
Sbjct: 342 RDAE 345
[85][TOP]
>UniRef100_UPI000051A77E PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
isoform 2 n=1 Tax=Apis mellifera RepID=UPI000051A77E
Length = 1422
Score = 169 bits (428), Expect = 1e-40
Identities = 94/178 (52%), Positives = 117/178 (65%)
Frame = +2
Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
+DLSP K+++GV+ LL + ++ D+ LS+ A
Sbjct: 994 TDLSPMKVIQGVKDLLDKCIIVAGDD---------------------------RLSKQAN 1026
Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
NATLLFQ VR++L +K V E RL+ +AF WL+ EIE RFQQA GEMVGA AAQS
Sbjct: 1027 ENATLLFQCLVRSTLCTKCVSEEFRLSSEAFEWLIGEIETRFQQAQVSPGEMVGALAAQS 1086
Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
+GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN+SK+ K PSL V+L G A DAE
Sbjct: 1087 LGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGAAARDAE 1144
[86][TOP]
>UniRef100_P90678 DNA-directed RNA polymerase (Fragment) n=1 Tax=Aduncospiculum
halicti RepID=P90678_9BILA
Length = 631
Score = 169 bits (428), Expect = 1e-40
Identities = 92/178 (51%), Positives = 117/178 (65%)
Frame = +2
Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
+DL+P ++++GV + + ++ D+ +S AQ
Sbjct: 207 TDLNPVRVIQGVREVSKKLIIVGGDD---------------------------RISVQAQ 239
Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
NATLL + VR++L +K + +H+L +AF WLL EIE RFQQA+A GEMVGA AAQS
Sbjct: 240 YNATLLMNILVRSTLCAKAMAEKHKLNAEAFEWLLGEIETRFQQAIAQPGEMVGALAAQS 299
Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ KTPSL V+L G A DAE
Sbjct: 300 LGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKKPKTPSLTVFLEGAAAKDAE 357
[87][TOP]
>UniRef100_A9QMQ7 DNA-directed RNA polymerase (Fragment) n=1 Tax=Phasmarhabditis sp.
EM434 RepID=A9QMQ7_9BILA
Length = 398
Score = 169 bits (428), Expect = 1e-40
Identities = 93/178 (52%), Positives = 119/178 (66%)
Frame = +2
Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
+DL+P +++ GV L + ++ S ED +S+ AQ
Sbjct: 211 TDLNPLRVIEGVRELSKKL-IIVSGED--------------------------RISKQAQ 243
Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
NATLL + +R++L SK + + HRL +AF WLL E+E RF+QA+A GEMVGA AAQS
Sbjct: 244 YNATLLMNILIRSTLCSKKMATSHRLNSEAFEWLLGEVETRFKQAIAQPGEMVGALAAQS 303
Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
+GEPATQMTLNTFH+AGVSAKNVTLGVPRL+EIINVSK+ KTPSL V+L+G A DAE
Sbjct: 304 LGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSKQLKTPSLTVFLQGAAAKDAE 361
[88][TOP]
>UniRef100_O35559 DNA-directed RNA polymerase n=1 Tax=Cricetulus griseus
RepID=O35559_CRIGR
Length = 1970
Score = 169 bits (427), Expect = 2e-40
Identities = 93/178 (52%), Positives = 117/178 (65%)
Frame = +2
Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
SDL K+V GV+ L + ++ D+ LS AQ
Sbjct: 1002 SDLHSIKVVEGVKELSKKLVIVNGDDP---------------------------LSRQAQ 1034
Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
NATLLF +H+R++L S+ + E RL+ +AF WLL EIE++F QA+A GEMVGA AAQS
Sbjct: 1035 ENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQS 1094
Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN+SK+ KTPSL V+L G + DAE
Sbjct: 1095 LGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSARDAE 1152
[89][TOP]
>UniRef100_Q7Q3C6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Anopheles gambiae
RepID=Q7Q3C6_ANOGA
Length = 1878
Score = 169 bits (427), Expect = 2e-40
Identities = 95/178 (53%), Positives = 114/178 (64%)
Frame = +2
Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
+DLSP K+++GV LL R ++ + LS+ A
Sbjct: 992 TDLSPLKVIQGVRDLLQRCVIVAGTD---------------------------RLSKQAN 1024
Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
NATLLFQ VR++L +K V E RL +AF WL+ EIE RFQQA GEMVGA AAQS
Sbjct: 1025 ENATLLFQCLVRSTLCTKYVAEEFRLNNEAFEWLIGEIETRFQQAQCNPGEMVGALAAQS 1084
Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
+GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN+SKR K PSL V+L G A DAE
Sbjct: 1085 LGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKRPKAPSLTVFLTGGAARDAE 1142
[90][TOP]
>UniRef100_A9UEE2 DNA-directed RNA polymerase (Fragment) n=1 Tax=Cephaloboides cf.
armata SB363 RepID=A9UEE2_9BILA
Length = 475
Score = 169 bits (427), Expect = 2e-40
Identities = 94/178 (52%), Positives = 118/178 (66%)
Frame = +2
Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
+DL+P +++ G+ L + V+ S ED +S+ AQ
Sbjct: 201 TDLNPLRVIEGIRELSTKL-VIVSGED--------------------------RISQQAQ 233
Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
NATLL + +R++L SK + S H+L +AF WLL EIE RF+QA+A GEMVGA AAQS
Sbjct: 234 YNATLLMNILIRSTLCSKKMASTHKLNSEAFEWLLGEIETRFKQAIAQPGEMVGALAAQS 293
Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
+GEPATQMTLNTFH+AGVSAKNVTLGVPRL+EIINVSK+ KTPSL V+L G A DAE
Sbjct: 294 LGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSKQLKTPSLTVFLNGAAAKDAE 351
[91][TOP]
>UniRef100_A9QMR5 DNA-directed RNA polymerase (Fragment) n=1 Tax=Rhabditoides
inermiformis RepID=A9QMR5_9BILA
Length = 524
Score = 168 bits (426), Expect = 2e-40
Identities = 86/124 (69%), Positives = 101/124 (81%)
Frame = +2
Query: 164 LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 343
+S+ AQ NATLL + VR++L SK + ++RL +AF WLL E+E RFQQA+A GEMVG
Sbjct: 228 ISKQAQYNATLLMNILVRSTLCSKQMADKYRLNAQAFEWLLGEVETRFQQAIAQPGEMVG 287
Query: 344 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 523
A AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK KTPSL V+L+G A
Sbjct: 288 ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKSPKTPSLTVFLQGAAA 347
Query: 524 HDAE 535
DAE
Sbjct: 348 RDAE 351
[92][TOP]
>UniRef100_A9QMF4 RNA polymerase 2 (Fragment) n=1 Tax=Rhabditoides inermiformis
RepID=A9QMF4_9BILA
Length = 597
Score = 168 bits (426), Expect = 2e-40
Identities = 86/124 (69%), Positives = 101/124 (81%)
Frame = +2
Query: 164 LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 343
+S+ AQ NATLL + VR++L SK + ++RL +AF WLL E+E RFQQA+A GEMVG
Sbjct: 196 ISKQAQYNATLLMNILVRSTLCSKQMADKYRLNAQAFEWLLGEVETRFQQAIAQPGEMVG 255
Query: 344 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 523
A AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK KTPSL V+L+G A
Sbjct: 256 ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKSPKTPSLTVFLQGAAA 315
Query: 524 HDAE 535
DAE
Sbjct: 316 RDAE 319
[93][TOP]
>UniRef100_UPI000179338A PREDICTED: similar to DNA-directed RNA polymerase II subunit RPB1
(RNA polymerase II subunit B1) (DNA-directed RNA
polymerase III largest subunit) n=1 Tax=Acyrthosiphon
pisum RepID=UPI000179338A
Length = 1862
Score = 168 bits (425), Expect = 3e-40
Identities = 93/178 (52%), Positives = 118/178 (66%)
Frame = +2
Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
+DL+P K++ GV+ LL + ++ + ELS+ A
Sbjct: 995 TDLNPVKVINGVKELLDKCVIVAGGD---------------------------ELSKKAN 1027
Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
NATLLFQ VR++L +K+V RL+ +AF WL+ EIENRF+QA A GEMVGA AAQS
Sbjct: 1028 HNATLLFQCLVRSTLCTKLVSERFRLSSEAFEWLIGEIENRFKQAQAQPGEMVGALAAQS 1087
Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
+GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN+SK+ K PSL V+L G A DAE
Sbjct: 1088 LGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGAAARDAE 1145
[94][TOP]
>UniRef100_Q6JU33 RNA polymerase II largest subunit (Fragment) n=1 Tax=Limnadia
lenticularis RepID=Q6JU33_9CRUS
Length = 256
Score = 168 bits (425), Expect = 3e-40
Identities = 93/178 (52%), Positives = 118/178 (66%)
Frame = +2
Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
+DL+P ++++GV LL + + ++ +LS+ A
Sbjct: 10 TDLNPVRVIQGVRDLLQKCIAVPGED---------------------------KLSKQAN 42
Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
NATLLFQ VRA+L +K V E+RL+ +AF WL+ EIE RF QA AP GEMVGA AAQS
Sbjct: 43 ENATLLFQTLVRATLCTKRVAEEYRLSSEAFEWLIGEIETRFLQAQAPPGEMVGALAAQS 102
Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
+GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN+SK+ K PSL V+L G A DAE
Sbjct: 103 LGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGAAARDAE 160
[95][TOP]
>UniRef100_P35084 DNA-directed RNA polymerase II subunit rpb1 n=1 Tax=Dictyostelium
discoideum RepID=RPB1_DICDI
Length = 1727
Score = 167 bits (424), Expect = 3e-40
Identities = 91/178 (51%), Positives = 117/178 (65%)
Frame = +2
Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
SDL+P+ +V +E L+ R +++ + + E DE
Sbjct: 989 SDLNPAVVVLEIEKLVARLKIIATADTTE------------------DDENFNRAWAEVY 1030
Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
NAT+LF + VR++ ASK VL+E RLT KAF W+ EIE++F QALA GEMVGA AAQS
Sbjct: 1031 FNATMLFSILVRSTFASKRVLTEFRLTEKAFLWVCGEIESKFLQALAHPGEMVGALAAQS 1090
Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
IGEPATQMTLNTFHYAGVS+KNVTLGVPRL+EIIN++K+ KTPSL +YL+ D +
Sbjct: 1091 IGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEIINIAKQVKTPSLTIYLKPHMARDMD 1148
[96][TOP]
>UniRef100_A9QMH3 DNA-directed RNA polymerase (Fragment) n=1 Tax=Rhabditis sp. PS1130
RepID=A9QMH3_9BILA
Length = 619
Score = 167 bits (423), Expect = 4e-40
Identities = 93/178 (52%), Positives = 120/178 (67%)
Frame = +2
Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
+DL+P +++ GV L + ++ S ED ++S+ AQ
Sbjct: 203 TDLNPLRVIEGVRELSKKL-IIVSGED--------------------------KISKQAQ 235
Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
NATLL + VR++L SK + S+++L +AF WLL E+E RF+QA+A GEMVGA AAQS
Sbjct: 236 YNATLLMNILVRSTLCSKKMASKYKLNSEAFEWLLGEVETRFKQAIAQPGEMVGALAAQS 295
Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
+GEPATQMTLNTFH+AGVSAKNVTLGVPRL+EIINVSK KTPSL V+L+G A DAE
Sbjct: 296 LGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSKTLKTPSLTVFLQGAAAKDAE 353
[97][TOP]
>UniRef100_A9QME1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Rhabditis brassicae
RepID=A9QME1_9BILA
Length = 628
Score = 167 bits (423), Expect = 4e-40
Identities = 93/178 (52%), Positives = 119/178 (66%)
Frame = +2
Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
+DL+P +++ GV L + ++ S ED +S+ AQ
Sbjct: 204 TDLNPLRVIEGVRELSQKL-IIVSGED--------------------------RISKQAQ 236
Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
NATLL + VR++L SK + S+++L +AF WLL E+E RF+QA+A GEMVGA AAQS
Sbjct: 237 YNATLLMNILVRSTLCSKKMASKYKLNSEAFEWLLGEVETRFKQAIAQPGEMVGALAAQS 296
Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
+GEPATQMTLNTFH+AGVSAKNVTLGVPRL+EIINVSK KTPSL V+L+G A DAE
Sbjct: 297 LGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSKTLKTPSLTVFLQGAAAKDAE 354
[98][TOP]
>UniRef100_UPI0000D5670C PREDICTED: similar to GA13798-PA n=1 Tax=Tribolium castaneum
RepID=UPI0000D5670C
Length = 2007
Score = 167 bits (422), Expect = 6e-40
Identities = 95/178 (53%), Positives = 118/178 (66%)
Frame = +2
Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
+DLSP ++++GV LL++ V+ + ED LS+ A
Sbjct: 998 TDLSPLRVIQGVRELLNKC-VIVAGED--------------------------RLSKQAN 1030
Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
NATLLFQ VR++L +K V E RL+ +AF WL+ EIE RFQQA GEMVGA AAQS
Sbjct: 1031 ENATLLFQCLVRSTLCTKCVSEEFRLSTEAFEWLIGEIETRFQQAQVNPGEMVGALAAQS 1090
Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
+GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN+SK+ K PSL V+L G A DAE
Sbjct: 1091 LGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGAAARDAE 1148
[99][TOP]
>UniRef100_Q6E227 RNA polymerase 2 (Fragment) n=1 Tax=Caenorhabditis japonica
RepID=Q6E227_CAEJA
Length = 608
Score = 167 bits (422), Expect = 6e-40
Identities = 86/125 (68%), Positives = 101/125 (80%)
Frame = +2
Query: 161 ELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMV 340
E+S+ AQ NATLL + +R++L +K + + +L +AF WLL EIE RFQQA+A GEMV
Sbjct: 220 EISKQAQYNATLLMNILLRSTLCTKKMCTTAKLNTEAFDWLLGEIETRFQQAIAQPGEMV 279
Query: 341 GATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDA 520
GA AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ KTPSL VYL G A
Sbjct: 280 GALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKQLKTPSLTVYLTGAA 339
Query: 521 VHDAE 535
DAE
Sbjct: 340 ARDAE 344
[100][TOP]
>UniRef100_A9QMG7 RNA polymerase 2 (Fragment) n=1 Tax=Distolabrellus veechi
RepID=A9QMG7_9BILA
Length = 583
Score = 167 bits (422), Expect = 6e-40
Identities = 86/124 (69%), Positives = 100/124 (80%)
Frame = +2
Query: 164 LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 343
+S+ AQ NATLL + VR++L SK + ++RL +AF WLL EIE+RFQQA+ GEMVG
Sbjct: 221 ISKHAQYNATLLMNILVRSTLCSKQMADKYRLNEEAFEWLLGEIEHRFQQAIVQPGEMVG 280
Query: 344 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 523
A AAQS+GEPATQMTLNTFH+AGVSAKNVTLGVPRL+EIINVSK KTPSL VYL G A
Sbjct: 281 ALAAQSLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSKSPKTPSLTVYLTGGAA 340
Query: 524 HDAE 535
DAE
Sbjct: 341 KDAE 344
[101][TOP]
>UniRef100_A9QMG0 DNA-directed RNA polymerase (Fragment) n=1 Tax=Oscheius tipulae
RepID=A9QMG0_OSCTI
Length = 629
Score = 167 bits (422), Expect = 6e-40
Identities = 84/124 (67%), Positives = 101/124 (81%)
Frame = +2
Query: 164 LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 343
+S AQ NATLL + +R++L SK + + H+L ++AF WLL EIE RF+ A+A GEMVG
Sbjct: 238 ISRQAQFNATLLMNILLRSTLCSKKMATTHKLNQEAFDWLLGEIETRFKSAIAQPGEMVG 297
Query: 344 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 523
A AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ KTPSL V+L+G A
Sbjct: 298 ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKQLKTPSLTVFLQGSAA 357
Query: 524 HDAE 535
DAE
Sbjct: 358 KDAE 361
[102][TOP]
>UniRef100_A9QME6 RNA polymerase 2 (Fragment) n=1 Tax=Pellioditis sp. JU274
RepID=A9QME6_9PELO
Length = 526
Score = 167 bits (422), Expect = 6e-40
Identities = 85/124 (68%), Positives = 101/124 (81%)
Frame = +2
Query: 164 LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 343
+S+ AQ NATLL + +R++L SK + S ++L +AF WLL E+E RFQQA+A GEMVG
Sbjct: 135 ISKQAQYNATLLMNILLRSTLCSKKMASTYKLNAEAFEWLLGEVETRFQQAIAQPGEMVG 194
Query: 344 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 523
A AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ KTPSL VYL G A
Sbjct: 195 ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKQLKTPSLTVYLTGAAT 254
Query: 524 HDAE 535
DA+
Sbjct: 255 KDAD 258
[103][TOP]
>UniRef100_A9QME4 RNA polymerase 2 (Fragment) n=1 Tax=Oscheius tipulae
RepID=A9QME4_OSCTI
Length = 446
Score = 167 bits (422), Expect = 6e-40
Identities = 84/124 (67%), Positives = 101/124 (81%)
Frame = +2
Query: 164 LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 343
+S AQ NATLL + +R++L SK + + H+L ++AF WLL EIE RF+ A+A GEMVG
Sbjct: 60 ISRQAQFNATLLMNILLRSTLCSKKMATTHKLNQEAFDWLLGEIETRFKSAIAQPGEMVG 119
Query: 344 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 523
A AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ KTPSL V+L+G A
Sbjct: 120 ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKQLKTPSLTVFLQGSAA 179
Query: 524 HDAE 535
DAE
Sbjct: 180 KDAE 183
[104][TOP]
>UniRef100_A8PU11 DNA-directed RNA polymerase n=1 Tax=Brugia malayi RepID=A8PU11_BRUMA
Length = 1943
Score = 167 bits (422), Expect = 6e-40
Identities = 92/178 (51%), Positives = 119/178 (66%)
Frame = +2
Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
+DL+P +++ GV+ L + V+ S ED +S+ AQ
Sbjct: 1067 TDLNPLRVIEGVKELSKKL-VIVSGED--------------------------RISKQAQ 1099
Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
NATLL + +R++L +K + +HRL + F WL+ EIE+RF+QA+ GEMVGA AAQS
Sbjct: 1100 YNATLLMNILLRSTLCAKRMAEKHRLNSEGFEWLIGEIESRFKQAIVQPGEMVGAIAAQS 1159
Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ KTPSL V+L+G A DAE
Sbjct: 1160 LGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKKPKTPSLTVFLQGTAAKDAE 1217
[105][TOP]
>UniRef100_Q6JU18 RNA polymerase II largest subunit (Fragment) n=1 Tax=Mesocyclops
edax RepID=Q6JU18_9MAXI
Length = 302
Score = 166 bits (421), Expect = 8e-40
Identities = 96/177 (54%), Positives = 116/177 (65%)
Frame = +2
Query: 5 DLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQL 184
DLSP K++ GV LL + V+ ED +LS+ A
Sbjct: 11 DLSPLKVITGVRDLLEKC-VIVKGED--------------------------KLSKQANE 43
Query: 185 NATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSI 364
NAT LFQ VR++L SK+V + RL+ +AF WLL EIE++F QA A GEMVGA AAQSI
Sbjct: 44 NATTLFQCLVRSTLCSKLVAEQFRLSEEAFEWLLGEIESKFMQAQATPGEMVGAIAAQSI 103
Query: 365 GEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN+SK+ K PSL V+L G A DAE
Sbjct: 104 GEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGAAARDAE 160
[106][TOP]
>UniRef100_O01364 DNA-directed RNA polymerase (Fragment) n=1 Tax=Cruznema tripartitum
RepID=O01364_9BILA
Length = 633
Score = 166 bits (421), Expect = 8e-40
Identities = 93/178 (52%), Positives = 117/178 (65%)
Frame = +2
Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
+DL+P +++ GV L + V+ ED +S+ AQ
Sbjct: 207 TDLNPLRVIEGVRELSKKL-VIVGGED--------------------------RISKQAQ 239
Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
NATLL + +R++L SK + S ++L ++AF WLL E+E RFQQ +A GEMVGA AAQS
Sbjct: 240 YNATLLMNILLRSTLCSKQMASHYKLNQEAFDWLLGEVETRFQQPIAQPGEMVGALAAQS 299
Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK KTPSL V+LRG A DA+
Sbjct: 300 LGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKMLKTPSLTVFLRGVAARDAD 357
[107][TOP]
>UniRef100_UPI0001985649 PREDICTED: similar to NRPB1 (RNA POLYMERASE II LARGE SUBUNIT); DNA
binding / DNA-directed RNA polymerase n=1 Tax=Vitis
vinifera RepID=UPI0001985649
Length = 1848
Score = 166 bits (420), Expect = 1e-39
Identities = 94/172 (54%), Positives = 115/172 (66%)
Frame = +2
Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
SD+ P +IV V+ L R +V+ D D I+ E AQ
Sbjct: 998 SDMHPMEIVEAVDKLQERLKVVPGD-----DLISME----------------------AQ 1030
Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
NATL F + +R++ ASK VL E+RLTR+AF W++ EIE+RF Q+L GEM+G AAQS
Sbjct: 1031 KNATLFFNILLRSTFASKRVLKEYRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQS 1090
Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGD 517
IGEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINV+K+ KTPSL VYL+ D
Sbjct: 1091 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLKPD 1142
[108][TOP]
>UniRef100_A7NVN7 DNA-directed RNA polymerase n=1 Tax=Vitis vinifera
RepID=A7NVN7_VITVI
Length = 1010
Score = 166 bits (420), Expect = 1e-39
Identities = 94/172 (54%), Positives = 115/172 (66%)
Frame = +2
Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
SD+ P +IV V+ L R +V+ D D I+ E AQ
Sbjct: 235 SDMHPMEIVEAVDKLQERLKVVPGD-----DLISME----------------------AQ 267
Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
NATL F + +R++ ASK VL E+RLTR+AF W++ EIE+RF Q+L GEM+G AAQS
Sbjct: 268 KNATLFFNILLRSTFASKRVLKEYRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQS 327
Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGD 517
IGEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINV+K+ KTPSL VYL+ D
Sbjct: 328 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLKPD 379
[109][TOP]
>UniRef100_Q9NJN3 RNA polymerase II largest subunit (Fragment) n=1 Tax=Armadillidium
vulgare RepID=Q9NJN3_ARMVU
Length = 433
Score = 166 bits (420), Expect = 1e-39
Identities = 92/178 (51%), Positives = 115/178 (64%)
Frame = +2
Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
+DLSP K+V GV L + +++ ++ +S A
Sbjct: 159 TDLSPIKVVEGVNETLRKCMIVSGED---------------------------RISVQAN 191
Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
NATLLF VR++L +K V E+RLT +AF WL+ EIE RF QA+A GEMVGA AAQS
Sbjct: 192 ENATLLFHCLVRSTLCTKKVSEEYRLTTEAFNWLMGEIETRFNQAIANPGEMVGALAAQS 251
Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
+GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN+SK+ K PSL V+L G A DAE
Sbjct: 252 LGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLLGAAARDAE 309
[110][TOP]
>UniRef100_Q6JU60 DNA-directed RNA polymerase (Fragment) n=1 Tax=Armadillidium
vulgare RepID=Q6JU60_ARMVU
Length = 736
Score = 166 bits (420), Expect = 1e-39
Identities = 92/178 (51%), Positives = 115/178 (64%)
Frame = +2
Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
+DLSP K+V GV L + +++ ++ +S A
Sbjct: 462 TDLSPIKVVEGVNETLRKCMIVSGED---------------------------RISVQAN 494
Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
NATLLF VR++L +K V E+RLT +AF WL+ EIE RF QA+A GEMVGA AAQS
Sbjct: 495 ENATLLFHCLVRSTLCTKKVSEEYRLTTEAFNWLMGEIETRFNQAIANPGEMVGALAAQS 554
Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
+GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN+SK+ K PSL V+L G A DAE
Sbjct: 555 LGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLLGAAARDAE 612
[111][TOP]
>UniRef100_Q9NJL5 RNA polymerase II largest subunit (Fragment) n=1 Tax=Metajapyx
subterraneus RepID=Q9NJL5_9HEXA
Length = 256
Score = 166 bits (419), Expect = 1e-39
Identities = 91/178 (51%), Positives = 117/178 (65%)
Frame = +2
Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
+DLSP ++++GV+ LL + ++ D+ LS+ A
Sbjct: 10 TDLSPLRVIQGVQELLRKCVIVAGDD---------------------------RLSKMAN 42
Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
NATLLFQ VR++L ++ V E RL+ +AF WL+ E+E RFQQA GEMVGA AAQS
Sbjct: 43 DNATLLFQCLVRSTLCTRRVAXEFRLSSEAFEWLIGEVETRFQQAQVXPGEMVGALAAQS 102
Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
+GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN+SK+ K PSL V+L G A DAE
Sbjct: 103 LGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGAAAXDAE 160
[112][TOP]
>UniRef100_Q9BN99 RNA polymerase II largest subunit (Fragment) n=1 Tax=Stenochrus
portoricensis RepID=Q9BN99_9ARAC
Length = 256
Score = 166 bits (419), Expect = 1e-39
Identities = 95/178 (53%), Positives = 115/178 (64%)
Frame = +2
Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
+DLSP +++ GVE L+ + ++ ++ LS A
Sbjct: 10 TDLSPLRVMHGVEDLVKKLIIVPGED---------------------------RLSIQAN 42
Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
NATLLF+ +R+ L +K V E RL+ +AF WLL EIE RFQQA GEMVGA AAQS
Sbjct: 43 DNATLLFRALLRSVLCTKRVAEEFRLSSEAFEWLLGEIETRFQQAQVQPGEMVGALAAQS 102
Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIIN+SKR KTPSL V+L G A DAE
Sbjct: 103 LGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINISKRPKTPSLTVFLTGAAARDAE 160
[113][TOP]
>UniRef100_C3ZES3 DNA-directed RNA polymerase n=1 Tax=Branchiostoma floridae
RepID=C3ZES3_BRAFL
Length = 1934
Score = 166 bits (419), Expect = 1e-39
Identities = 92/178 (51%), Positives = 114/178 (64%)
Frame = +2
Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
+DL P K+V GV L + ++ D+ + A Q
Sbjct: 998 TDLHPIKVVEGVRDLSRKLVIVKGDDPISIQA---------------------------Q 1030
Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
NAT+LF +R++L ++ VL E RL+ +AF WLL EIE+RF QA+ GEMVGA AAQS
Sbjct: 1031 ANATILFNTLLRSTLCTRRVLEEFRLSTEAFDWLLGEIESRFNQAIVQPGEMVGALAAQS 1090
Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ KTPSL V+L G +DAE
Sbjct: 1091 LGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKKPKTPSLTVFLLGQPANDAE 1148
[114][TOP]
>UniRef100_A9QMP3 DNA-directed RNA polymerase (Fragment) n=1 Tax=Rhabditis brassicae
RepID=A9QMP3_9BILA
Length = 406
Score = 166 bits (419), Expect = 1e-39
Identities = 90/178 (50%), Positives = 118/178 (66%)
Frame = +2
Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
+DL+P +++ GV L + +++ + +S+ AQ
Sbjct: 211 TDLNPLRVIEGVRELSQKLIIVSGEN---------------------------RISKQAQ 243
Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
NATLL + VR++L SK + S+++L +AF WLL E+E RF+QA+A GEMVGA AAQS
Sbjct: 244 YNATLLMNILVRSTLCSKKMASKYKLNSEAFEWLLGEVETRFKQAIAQPGEMVGALAAQS 303
Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
+GEPATQMTLNTFH+AGVSAKNVTLGVPRL+EIINVSK KTPSL V+L+G A DAE
Sbjct: 304 LGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSKTLKTPSLTVFLQGAAAKDAE 361
[115][TOP]
>UniRef100_A9QMF2 DNA-directed RNA polymerase (Fragment) n=1 Tax=Pelodera teres
RepID=A9QMF2_9PELO
Length = 629
Score = 166 bits (419), Expect = 1e-39
Identities = 84/124 (67%), Positives = 100/124 (80%)
Frame = +2
Query: 164 LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 343
+S+ AQ NATLL + +R++L SK + +HRL AF WLL EIE+RFQQA+ GEMVG
Sbjct: 234 ISKQAQYNATLLVNILIRSTLCSKQMSEKHRLNESAFDWLLGEIEHRFQQAIVQPGEMVG 293
Query: 344 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 523
A AAQS+GEPATQMTLNTFH+AGVSAKNVTLGVPRL+EIINVSK +TPSL V+L+G A
Sbjct: 294 ALAAQSLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSKSPRTPSLTVFLQGAAA 353
Query: 524 HDAE 535
DAE
Sbjct: 354 KDAE 357
[116][TOP]
>UniRef100_UPI000186501C hypothetical protein BRAFLDRAFT_115025 n=1 Tax=Branchiostoma floridae
RepID=UPI000186501C
Length = 1956
Score = 165 bits (418), Expect = 2e-39
Identities = 92/178 (51%), Positives = 114/178 (64%)
Frame = +2
Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
+DL P K+V GV L + ++ D+ + A Q
Sbjct: 998 TDLHPIKVVEGVRDLSKKLVIVKGDDPISIQA---------------------------Q 1030
Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
NAT+LF +R++L ++ VL E RL+ +AF WLL EIE+RF QA+ GEMVGA AAQS
Sbjct: 1031 ANATILFNTLLRSTLCTRRVLEEFRLSTEAFDWLLGEIESRFNQAIVQPGEMVGALAAQS 1090
Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ KTPSL V+L G +DAE
Sbjct: 1091 LGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKKPKTPSLTVFLLGQPANDAE 1148
[117][TOP]
>UniRef100_Q6E233 RNA polymerase 2 (Fragment) n=1 Tax=Caenorhabditis remanei
RepID=Q6E233_CAERE
Length = 611
Score = 165 bits (418), Expect = 2e-39
Identities = 84/125 (67%), Positives = 102/125 (81%)
Frame = +2
Query: 161 ELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMV 340
E+S+ AQ NATLL + +R++L +K + + +L +AF WLL E+E+RFQQA+A GEMV
Sbjct: 220 EISKQAQYNATLLMNILLRSTLCTKKMCTSAKLNTEAFDWLLGEVESRFQQAIAQPGEMV 279
Query: 341 GATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDA 520
GA AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ KTPSL V+L G A
Sbjct: 280 GALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKQLKTPSLTVFLTGAA 339
Query: 521 VHDAE 535
DAE
Sbjct: 340 AKDAE 344
[118][TOP]
>UniRef100_O01370 DNA-directed RNA polymerase (Fragment) n=1 Tax=Mesorhabditis sp.
RepID=O01370_9BILA
Length = 633
Score = 165 bits (418), Expect = 2e-39
Identities = 91/178 (51%), Positives = 118/178 (66%)
Frame = +2
Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
++LSP +++ GV L + +++ D+ +S+ AQ
Sbjct: 207 TNLSPLRVIEGVRELSKKLIIVSGDD---------------------------RISQQAQ 239
Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
NATLL + +R++L SK + ++RL ++ F WLL EIE+RFQQA+A GEMVGA AAQS
Sbjct: 240 YNATLLMNILLRSTLCSKQMAEKYRLNQEGFEWLLGEIEHRFQQAIAQPGEMVGALAAQS 299
Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
+GEPATQMTLNTFH+AGVSAKNVTLGVPRL+EIINVSK KTPSL V+L G A DAE
Sbjct: 300 LGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSKSPKTPSLTVFLTGAARKDAE 357
[119][TOP]
>UniRef100_B7PJA3 DNA-directed RNA polymerase (Fragment) n=1 Tax=Ixodes scapularis
RepID=B7PJA3_IXOSC
Length = 1937
Score = 165 bits (418), Expect = 2e-39
Identities = 94/178 (52%), Positives = 116/178 (65%)
Frame = +2
Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
+DLSP ++V+GVE L+ + ++ ++ LS A
Sbjct: 1002 TDLSPLRVVQGVEELVKKLVIVPGED---------------------------HLSIQAN 1034
Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
NATLLF+ +RA+L SK V E RL+ ++F WLL EIE RF Q+ GEMVGA AAQS
Sbjct: 1035 ENATLLFRSLLRATLCSKRVAEEFRLSTESFEWLLGEIETRFHQSQGQPGEMVGALAAQS 1094
Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIIN+SK+ KTPSL V+L G A DAE
Sbjct: 1095 LGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINISKKPKTPSLTVFLTGAAARDAE 1152
[120][TOP]
>UniRef100_A9QMP5 DNA-directed RNA polymerase (Fragment) n=1 Tax=Oscheius insectivora
RepID=A9QMP5_9BILA
Length = 474
Score = 165 bits (418), Expect = 2e-39
Identities = 83/124 (66%), Positives = 103/124 (83%)
Frame = +2
Query: 164 LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 343
+S+ AQ NATLL + +R++L SK + + ++L ++AF WLL E+E RF+QA+A GEMVG
Sbjct: 227 ISKQAQYNATLLMNILLRSTLCSKKMATTYKLNQEAFEWLLGEVETRFKQAIAQPGEMVG 286
Query: 344 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 523
A AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ KTPSL V+L+G A
Sbjct: 287 ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKQLKTPSLTVFLQGAAA 346
Query: 524 HDAE 535
DAE
Sbjct: 347 KDAE 350
[121][TOP]
>UniRef100_Q9NJN1 RNA polymerase II largest subunit (Fragment) n=1 Tax=Semibalanus
balanoides RepID=Q9NJN1_SEMBA
Length = 256
Score = 165 bits (417), Expect = 2e-39
Identities = 90/178 (50%), Positives = 116/178 (65%)
Frame = +2
Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
+DLSP K++ GV LL R V+ ++ LS+TA
Sbjct: 10 TDLSPLKVLEGVRTLLSRCVVVRGED---------------------------RLSKTAN 42
Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
NAT+LF VR++L ++ V E+RL+ +AF WL+ EI+ RF QA+ GEMVGA AAQS
Sbjct: 43 ANATILFSCLVRSTLCTRRVAEEYRLSSEAFEWLIGEIDTRFHQAMVNPGEMVGALAAQS 102
Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
+GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN+SK+ K PSL V+L G + DAE
Sbjct: 103 LGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGASARDAE 160
[122][TOP]
>UniRef100_Q9BNA4 RNA polymerase II largest subunit (Fragment) n=1 Tax=solifugid
'Sol' RepID=Q9BNA4_9ARAC
Length = 256
Score = 165 bits (417), Expect = 2e-39
Identities = 93/178 (52%), Positives = 116/178 (65%)
Frame = +2
Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
+DLSP + ++GVE L+ + ++ ++ LS A
Sbjct: 10 TDLSPLRTIKGVEELVKKLIIVPGED---------------------------RLSIQAN 42
Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
NATLLF+ +R++L +K V E RL+ +AF WLL EIE +FQQA GEMVGA AAQS
Sbjct: 43 DNATLLFRALLRSTLCAKRVSEEFRLSTEAFDWLLEEIETKFQQAQGQPGEMVGALAAQS 102
Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIIN+SK+ KTPSL V+L G A DAE
Sbjct: 103 LGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINISKKPKTPSLTVFLTGAAARDAE 160
[123][TOP]
>UniRef100_A9UEE0 RNA polymerase 2 largest subunit (Fragment) n=1 Tax=Diploscapter
sp. JU359 RepID=A9UEE0_9BILA
Length = 284
Score = 165 bits (417), Expect = 2e-39
Identities = 94/178 (52%), Positives = 117/178 (65%)
Frame = +2
Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
+DLSP +++ GV L R ++ S ED +S+ AQ
Sbjct: 3 TDLSPIRVIDGVREL-SRKLIIVSGED--------------------------RISKQAQ 35
Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
NATLL + +R++L SK + ++L +AF WLL E+E RF QA+A GEMVGA AAQS
Sbjct: 36 YNATLLMXILLRSTLCSKKMGMAYKLDSEAFEWLLGEVEQRFNQAIAQPGEMVGALAAQS 95
Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ KTPSL V+L+G A DAE
Sbjct: 96 LGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKKLKTPSLTVFLQGAAAKDAE 153
[124][TOP]
>UniRef100_A9QMG1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Oscheius
dolichuroides RepID=A9QMG1_9BILA
Length = 629
Score = 165 bits (417), Expect = 2e-39
Identities = 90/176 (51%), Positives = 116/176 (65%)
Frame = +2
Query: 8 LSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLN 187
L+P ++RGV L + ++ D+ +S+ AQ N
Sbjct: 216 LNPLNVIRGVRSLSEKLIIVGGDD---------------------------RISKQAQYN 248
Query: 188 ATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIG 367
ATLL + +R++L +K + + H+L ++AF WLL EIE RF+ A+A GEMVGA AAQS+G
Sbjct: 249 ATLLMNILLRSTLCAKKMATTHKLNQEAFEWLLGEIETRFKAAIAQPGEMVGALAAQSLG 308
Query: 368 EPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
EPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ KTPSL V+L+G A DAE
Sbjct: 309 EPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKQLKTPSLTVFLQGAAAKDAE 364
[125][TOP]
>UniRef100_UPI000186D846 predicted protein n=1 Tax=Pediculus humanus corporis
RepID=UPI000186D846
Length = 1885
Score = 164 bits (416), Expect = 3e-39
Identities = 94/178 (52%), Positives = 116/178 (65%)
Frame = +2
Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
+DLSP +++ GV LL + V+ + ED LS+ A
Sbjct: 987 TDLSPLRVIEGVRDLLQKC-VIVAGED--------------------------HLSKQAN 1019
Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
NATLLFQ VR++L +K V + RL+ +AF WL+ EIE RFQQA GEMVGA AAQS
Sbjct: 1020 ENATLLFQCLVRSTLCTKCVSEDMRLSTEAFEWLIGEIETRFQQAQCAPGEMVGALAAQS 1079
Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
+GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN+SK+ K PSL V+L G A DAE
Sbjct: 1080 LGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGAAARDAE 1137
[126][TOP]
>UniRef100_Q6E228 DNA-directed RNA polymerase (Fragment) n=1 Tax=Rhabditella axei
RepID=Q6E228_9BILA
Length = 621
Score = 164 bits (416), Expect = 3e-39
Identities = 91/178 (51%), Positives = 119/178 (66%)
Frame = +2
Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
+DL+P +++ G++ L + ++ S ED +S+ AQ
Sbjct: 211 TDLNPLRVIDGIKELSSKL-IIVSGED--------------------------RISQQAQ 243
Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
NATLL + +R++L SK + S ++L ++F WL+ EIE RF+QA+A GEMVGA AAQS
Sbjct: 244 YNATLLMNILIRSTLCSKKMASTYKLNAESFEWLIGEIETRFKQAIAQPGEMVGALAAQS 303
Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
+GEPATQMTLNTFH+AGVSAKNVTLGVPRL+EIINVSK+ KTPSL VYL G A DAE
Sbjct: 304 LGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSKQLKTPSLTVYLIGAAAKDAE 361
[127][TOP]
>UniRef100_C5YGY9 DNA-directed RNA polymerase n=1 Tax=Sorghum bicolor
RepID=C5YGY9_SORBI
Length = 1857
Score = 164 bits (415), Expect = 4e-39
Identities = 89/170 (52%), Positives = 113/170 (66%)
Frame = +2
Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
SD+ P +IV V+ L R +V+ D+ ++A Q
Sbjct: 997 SDMHPMEIVEAVDKLQERLKVVPGDDPMSIEA---------------------------Q 1029
Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
NATL F + +R++ ASK VL E+RLT++AF W++ EIE+RF Q+L GEM+G AAQS
Sbjct: 1030 KNATLFFNILLRSTFASKRVLKEYRLTKEAFEWVIGEIESRFLQSLVAPGEMIGCVAAQS 1089
Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLR 511
IGEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINV+K+ KTPSL VYL+
Sbjct: 1090 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK 1139
[128][TOP]
>UniRef100_A9QMQ4 RNA polymerase 2 (Fragment) n=1 Tax=Choriorhabditis dudichi
RepID=A9QMQ4_9BILA
Length = 380
Score = 164 bits (415), Expect = 4e-39
Identities = 83/120 (69%), Positives = 97/120 (80%)
Frame = +2
Query: 176 AQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAA 355
AQ NATLL + +R++L SK + + H+L +AF WLL E+E RFQQA+A GEMVGA AA
Sbjct: 1 AQYNATLLMNILIRSTLCSKKMATTHKLNAEAFEWLLGEVETRFQQAIAQPGEMVGALAA 60
Query: 356 QSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
QS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK KTPSL +L+G A DAE
Sbjct: 61 QSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKTLKTPSLTCFLQGAAAKDAE 120
[129][TOP]
>UniRef100_Q6E231 RNA polymerase 2 (Fragment) n=1 Tax=Caenorhabditis brenneri
RepID=Q6E231_CAEBE
Length = 596
Score = 164 bits (414), Expect = 5e-39
Identities = 84/125 (67%), Positives = 100/125 (80%)
Frame = +2
Query: 161 ELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMV 340
E+S+ AQ NATLL + +R++L +K + + +L +AF WLL EIE RFQQA+A GEMV
Sbjct: 212 EISKQAQYNATLLMNILLRSTLCTKKMCTSAKLNTEAFDWLLGEIETRFQQAIAQPGEMV 271
Query: 341 GATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDA 520
GA AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ KTPSL V+L G A
Sbjct: 272 GALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKQLKTPSLTVFLTGPA 331
Query: 521 VHDAE 535
D E
Sbjct: 332 AKDPE 336
[130][TOP]
>UniRef100_A9QMT0 RNA polymerase 2 (Fragment) n=1 Tax=Protorhabditis sp. JB122
RepID=A9QMT0_9BILA
Length = 271
Score = 164 bits (414), Expect = 5e-39
Identities = 93/178 (52%), Positives = 115/178 (64%)
Frame = +2
Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
+DLSP +++ GV L R ++ S ED +S+ AQ
Sbjct: 3 TDLSPLRVIEGVREL-SRKLIIVSGED--------------------------RISKQAQ 35
Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
NATLL + +R++L SK + ++L +AF WLL E+E RF A+A GEMVGA AAQS
Sbjct: 36 YNATLLMNILLRSTLCSKKMGMSYKLDSEAFEWLLGEVEQRFNSAIAQPGEMVGALAAQS 95
Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ KTPSL V+L G A DAE
Sbjct: 96 LGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKQLKTPSLTVFLEGAAAKDAE 153
[131][TOP]
>UniRef100_P18616 DNA-directed RNA polymerase II subunit RPB1 n=1 Tax=Arabidopsis
thaliana RepID=RPB1_ARATH
Length = 1840
Score = 164 bits (414), Expect = 5e-39
Identities = 94/178 (52%), Positives = 115/178 (64%)
Frame = +2
Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
SD+ P +IV V+ L R V+ D+ LS AQ
Sbjct: 1000 SDMHPVEIVDAVDKLQERLLVVPGDD---------------------------ALSVEAQ 1032
Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
NATL F + +R++LASK VL E++L+R+AF W++ EIE+RF Q+L GEM+G AAQS
Sbjct: 1033 KNATLFFNILLRSTLASKRVLEEYKLSREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQS 1092
Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
IGEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINV+KR KTPSL VYL +A E
Sbjct: 1093 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLTPEASKSKE 1150
[132][TOP]
>UniRef100_Q99368 DNA-directed RNA polymerase (Fragment) n=1 Tax=Glycine max
RepID=Q99368_SOYBN
Length = 977
Score = 163 bits (413), Expect = 6e-39
Identities = 92/173 (53%), Positives = 117/173 (67%)
Frame = +2
Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
SD+ P +IV ++ L R +V+ EDA LS+ AQ
Sbjct: 190 SDMHPMEIVEAIDKLQERLKVVPG-EDA--------------------------LSQEAQ 222
Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
NATLLF + +R++ ASK VL E+RL+R++F W++ EIE+RF Q+L GEM+G AAQS
Sbjct: 223 KNATLLFNILLRSTFASKRVLEEYRLSRESFEWVVGEIESRFLQSLVVPGEMIGVVAAQS 282
Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDA 520
IGEPATQMTLNTFH+AGVSAKNVTLGVPRL+E+INV+K KTPSL VYL+ DA
Sbjct: 283 IGEPATQMTLNTFHFAGVSAKNVTLGVPRLRELINVAKSIKTPSLSVYLKPDA 335
[133][TOP]
>UniRef100_B9FZ51 DNA-directed RNA polymerase n=1 Tax=Oryza sativa Japonica Group
RepID=B9FZ51_ORYSJ
Length = 1526
Score = 163 bits (413), Expect = 6e-39
Identities = 88/170 (51%), Positives = 113/170 (66%)
Frame = +2
Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
SD+ P +IV ++ L R +V+ D+ ++A Q
Sbjct: 669 SDMHPMEIVEAIDKLQERLKVVPGDDAMSIEA---------------------------Q 701
Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
NATL F + +R++ ASK VL E+RLT++AF W++ EIE+RF Q+L GEM+G AAQS
Sbjct: 702 KNATLFFNILLRSTFASKRVLKEYRLTKEAFEWVIGEIESRFLQSLVAPGEMIGCVAAQS 761
Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLR 511
IGEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINV+K+ KTPSL VYL+
Sbjct: 762 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK 811
[134][TOP]
>UniRef100_B8BAW1 DNA-directed RNA polymerase n=1 Tax=Oryza sativa Indica Group
RepID=B8BAW1_ORYSI
Length = 1449
Score = 163 bits (413), Expect = 6e-39
Identities = 88/170 (51%), Positives = 113/170 (66%)
Frame = +2
Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
SD+ P +IV ++ L R +V+ D+ ++A Q
Sbjct: 968 SDMHPMEIVEAIDKLQERLKVVPGDDAMSIEA---------------------------Q 1000
Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
NATL F + +R++ ASK VL E+RLT++AF W++ EIE+RF Q+L GEM+G AAQS
Sbjct: 1001 KNATLFFNILLRSTFASKRVLKEYRLTKEAFEWVIGEIESRFLQSLVAPGEMIGCVAAQS 1060
Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLR 511
IGEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINV+K+ KTPSL VYL+
Sbjct: 1061 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK 1110
[135][TOP]
>UniRef100_Q17085 DNA-directed RNA polymerase (Fragment) n=1 Tax=Artemia salina
RepID=Q17085_ARTSA
Length = 1341
Score = 163 bits (413), Expect = 6e-39
Identities = 95/178 (53%), Positives = 117/178 (65%)
Frame = +2
Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
SDLSP ++++GV LL + V+ + ED +LS+ A
Sbjct: 914 SDLSPLRVIQGVRDLL-KNCVIVNGED--------------------------KLSKQAN 946
Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
NATLLFQ VR++L +K + E+RL +AF WL+ EIE RFQ A A GEMVGA AAQS
Sbjct: 947 ENATLLFQCLVRSTLCTKRLADEYRLNTEAFEWLIGEIETRFQLAQAVPGEMVGAIAAQS 1006
Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
+GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIINVS+ K PSL V+L G A DAE
Sbjct: 1007 LGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINVSRSPKAPSLTVFLTGTAARDAE 1064
[136][TOP]
>UniRef100_A9QMS1 RNA polymerase 2 (Fragment) n=1 Tax=Rhabditoides regina
RepID=A9QMS1_9BILA
Length = 426
Score = 163 bits (413), Expect = 6e-39
Identities = 83/124 (66%), Positives = 98/124 (79%)
Frame = +2
Query: 164 LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 343
+S+ AQ NATLL + +R++L SK + +H+L + F WLL EIE RFQ A+A GEMVG
Sbjct: 30 ISKQAQYNATLLMNILIRSTLCSKQMAEKHKLNEEGFEWLLGEIETRFQLAIAQPGEMVG 89
Query: 344 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 523
A AAQS+GEPATQMTLNTFH+AGVSAKNVTLGVPRL+EIINVSK KTPSL V+L G A
Sbjct: 90 ALAAQSLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSKSPKTPSLTVFLHGAAA 149
Query: 524 HDAE 535
DAE
Sbjct: 150 KDAE 153
[137][TOP]
>UniRef100_A9QMP7 RNA polymerase 2 (Fragment) n=1 Tax=Rhabditoides inermis
RepID=A9QMP7_9BILA
Length = 440
Score = 163 bits (413), Expect = 6e-39
Identities = 83/124 (66%), Positives = 99/124 (79%)
Frame = +2
Query: 164 LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 343
+S+ AQ NATLL + VR++L SK + ++L +AF WLL E+E RFQQA+A GEMVG
Sbjct: 193 ISKQAQYNATLLMNILVRSTLCSKKMAEHYKLNSEAFEWLLGEVETRFQQAIAQPGEMVG 252
Query: 344 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 523
AAQS+GEPATQMTLNTFH+AGVSAKNVTLGVPRL+EIINVSK+ KTPSL V+L G A
Sbjct: 253 PLAAQSLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSKQPKTPSLTVFLEGAAA 312
Query: 524 HDAE 535
DAE
Sbjct: 313 KDAE 316
[138][TOP]
>UniRef100_A9QMG6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Teratorhabditis
palmarum RepID=A9QMG6_9BILA
Length = 633
Score = 163 bits (413), Expect = 6e-39
Identities = 92/178 (51%), Positives = 115/178 (64%)
Frame = +2
Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
+DLSP +++ G+ L + V+ S ED +S+ AQ
Sbjct: 211 TDLSPVRVIEGIRELSKKL-VIVSGED--------------------------RISKQAQ 243
Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
NATLL + +R++L SK V S H+L +AF WLL EIE+RF+QA+A GA AAQS
Sbjct: 244 YNATLLMNILIRSTLCSKRVASMHKLNNEAFDWLLGEIEHRFKQAIAXXXXXXGALAAQS 303
Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
+GEPATQMTLNTFH+AGVSAKNVTLGVPRL+EIINVSK+ KTPSL +YL G A DAE
Sbjct: 304 LGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSKKPKTPSLTIYLTGAAARDAE 361
[139][TOP]
>UniRef100_A9QMF9 DNA-directed RNA polymerase (Fragment) n=1 Tax=Rhabditis rainai
RepID=A9QMF9_9BILA
Length = 618
Score = 163 bits (413), Expect = 6e-39
Identities = 90/178 (50%), Positives = 118/178 (66%)
Frame = +2
Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
+ L+P K++ GV+ L + +++ D+ +S+ AQ
Sbjct: 202 TSLNPLKVISGVQELSKKLIIVSGDDS---------------------------ISKQAQ 234
Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
NATLL + +R++L SK + S ++L +AF WLL E+E RF+QA+A GEMVGA AAQS
Sbjct: 235 YNATLLMNILLRSTLCSKRMASMYKLNSEAFEWLLGEVETRFKQAIAQPGEMVGALAAQS 294
Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
+GEPATQMTLNTFH+AGVSAKNVTLGVPRL+EIINVSK+ KTPSL V+L G A DAE
Sbjct: 295 LGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSKQLKTPSLSVFLTGAAAKDAE 352
[140][TOP]
>UniRef100_A9QMF5 DNA-directed RNA polymerase (Fragment) n=1 Tax=Rhabditoides inermis
RepID=A9QMF5_9BILA
Length = 630
Score = 163 bits (413), Expect = 6e-39
Identities = 83/124 (66%), Positives = 99/124 (79%)
Frame = +2
Query: 164 LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 343
+S+ AQ NATLL + VR++L SK + ++L +AF WLL E+E RFQQA+A GEMVG
Sbjct: 230 ISKQAQYNATLLMNILVRSTLCSKKMAEHYKLNSEAFEWLLGEVETRFQQAIAQPGEMVG 289
Query: 344 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 523
AAQS+GEPATQMTLNTFH+AGVSAKNVTLGVPRL+EIINVSK+ KTPSL V+L G A
Sbjct: 290 PLAAQSLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSKQPKTPSLTVFLEGAAA 349
Query: 524 HDAE 535
DAE
Sbjct: 350 KDAE 353
[141][TOP]
>UniRef100_A9QMF3 DNA-directed RNA polymerase (Fragment) n=1 Tax=Rhabditoides regina
RepID=A9QMF3_9BILA
Length = 626
Score = 163 bits (413), Expect = 6e-39
Identities = 83/124 (66%), Positives = 98/124 (79%)
Frame = +2
Query: 164 LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 343
+S+ AQ NATLL + +R++L SK + +H+L + F WLL EIE RFQ A+A GEMVG
Sbjct: 234 ISKQAQYNATLLMNILIRSTLCSKQMAEKHKLNEEGFEWLLGEIETRFQLAIAQPGEMVG 293
Query: 344 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 523
A AAQS+GEPATQMTLNTFH+AGVSAKNVTLGVPRL+EIINVSK KTPSL V+L G A
Sbjct: 294 ALAAQSLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSKSPKTPSLTVFLHGAAA 353
Query: 524 HDAE 535
DAE
Sbjct: 354 KDAE 357
[142][TOP]
>UniRef100_P16356 DNA-directed RNA polymerase II subunit RPB1 n=1 Tax=Caenorhabditis
elegans RepID=RPB1_CAEEL
Length = 1852
Score = 163 bits (413), Expect = 6e-39
Identities = 84/125 (67%), Positives = 101/125 (80%)
Frame = +2
Query: 161 ELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMV 340
E+S+ AQ NATLL + +R++L +K + ++ +L +AF WLL EIE+RFQQA+A GEMV
Sbjct: 1018 EISKQAQYNATLLMNILLRSTLCTKNMCTKSKLNSEAFDWLLGEIESRFQQAIAQPGEMV 1077
Query: 341 GATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDA 520
GA AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK KTPSL V+L G A
Sbjct: 1078 GALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKTLKTPSLTVFLTGAA 1137
Query: 521 VHDAE 535
D E
Sbjct: 1138 AKDPE 1142
[143][TOP]
>UniRef100_P35074 DNA-directed RNA polymerase II subunit RPB1 n=1 Tax=Caenorhabditis
briggsae RepID=RPB1_CAEBR
Length = 1853
Score = 163 bits (413), Expect = 6e-39
Identities = 84/125 (67%), Positives = 100/125 (80%)
Frame = +2
Query: 161 ELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMV 340
E+S+ AQ NATLL + +R++L +K + + +L +AF WLL EIE RFQQA+A GEMV
Sbjct: 1022 EISKQAQYNATLLMNILLRSTLCTKKMCTSAKLNTEAFDWLLGEIETRFQQAIAQPGEMV 1081
Query: 341 GATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDA 520
GA AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ KTPSL V+L G A
Sbjct: 1082 GALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKQLKTPSLTVFLTGAA 1141
Query: 521 VHDAE 535
D E
Sbjct: 1142 AKDPE 1146
[144][TOP]
>UniRef100_UPI0000E12351 Os05g0151000 n=1 Tax=Oryza sativa Japonica Group RepID=UPI0000E12351
Length = 2085
Score = 163 bits (412), Expect = 8e-39
Identities = 88/170 (51%), Positives = 113/170 (66%)
Frame = +2
Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
SD+ P +IV ++ L R +V+ D+D ++A Q
Sbjct: 999 SDMHPMEIVDAIDKLQERLKVVPGDDDISIEA---------------------------Q 1031
Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
NATL F + +R++ ASK VL E+RLT++AF W++ EIE+RF Q+L GEM+G AAQS
Sbjct: 1032 KNATLFFNILLRSTFASKRVLKEYRLTKEAFEWVIGEIESRFLQSLVAPGEMIGCVAAQS 1091
Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLR 511
IGEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINV+K KTPSL V+L+
Sbjct: 1092 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKNIKTPSLSVHLK 1141
[145][TOP]
>UniRef100_Q5WMZ9 DNA-directed RNA polymerase n=1 Tax=Oryza sativa Japonica Group
RepID=Q5WMZ9_ORYSJ
Length = 1741
Score = 163 bits (412), Expect = 8e-39
Identities = 88/170 (51%), Positives = 113/170 (66%)
Frame = +2
Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
SD+ P +IV ++ L R +V+ D+D ++A Q
Sbjct: 946 SDMHPMEIVDAIDKLQERLKVVPGDDDISIEA---------------------------Q 978
Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
NATL F + +R++ ASK VL E+RLT++AF W++ EIE+RF Q+L GEM+G AAQS
Sbjct: 979 KNATLFFNILLRSTFASKRVLKEYRLTKEAFEWVIGEIESRFLQSLVAPGEMIGCVAAQS 1038
Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLR 511
IGEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINV+K KTPSL V+L+
Sbjct: 1039 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKNIKTPSLSVHLK 1088
[146][TOP]
>UniRef100_Q0DKN9 DNA-directed RNA polymerase n=1 Tax=Oryza sativa Japonica Group
RepID=Q0DKN9_ORYSJ
Length = 1834
Score = 163 bits (412), Expect = 8e-39
Identities = 88/170 (51%), Positives = 113/170 (66%)
Frame = +2
Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
SD+ P +IV ++ L R +V+ D+D ++A Q
Sbjct: 999 SDMHPMEIVDAIDKLQERLKVVPGDDDISIEA---------------------------Q 1031
Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
NATL F + +R++ ASK VL E+RLT++AF W++ EIE+RF Q+L GEM+G AAQS
Sbjct: 1032 KNATLFFNILLRSTFASKRVLKEYRLTKEAFEWVIGEIESRFLQSLVAPGEMIGCVAAQS 1091
Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLR 511
IGEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINV+K KTPSL V+L+
Sbjct: 1092 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKNIKTPSLSVHLK 1141
[147][TOP]
>UniRef100_C5Y387 DNA-directed RNA polymerase n=1 Tax=Sorghum bicolor
RepID=C5Y387_SORBI
Length = 1874
Score = 163 bits (412), Expect = 8e-39
Identities = 92/170 (54%), Positives = 113/170 (66%)
Frame = +2
Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
SD+ P +IV ++ L R +V+ D DAI+ E AQ
Sbjct: 998 SDMHPIEIVEAIDKLQERLKVVPGD-----DAISIE----------------------AQ 1030
Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
NATL F +H+RA+ ASK VL E+RLTR+AF W++ EI RF Q+L EM+G AAQS
Sbjct: 1031 KNATLFFNIHLRATFASKRVLREYRLTREAFEWIIDEIVWRFSQSLVAPSEMIGCVAAQS 1090
Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLR 511
IGEPATQMTLNTFH+AGVSAKNVTLGVPRL+EIINV+K+ KTPSL VYL+
Sbjct: 1091 IGEPATQMTLNTFHFAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK 1140
[148][TOP]
>UniRef100_A9TK89 DNA-directed RNA polymerase n=1 Tax=Physcomitrella patens subsp.
patens RepID=A9TK89_PHYPA
Length = 1646
Score = 163 bits (412), Expect = 8e-39
Identities = 90/170 (52%), Positives = 113/170 (66%)
Frame = +2
Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
SD+ P +IV V+ L R RV+ D+ ++S AQ
Sbjct: 986 SDMHPMEIVEAVDKLQERLRVVPGDD---------------------------QISMEAQ 1018
Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
NATL F +R++LASK VL ++RLTR+AF W++ EIE RF +L GEM+G AAQS
Sbjct: 1019 RNATLFFGCLLRSTLASKRVLKDYRLTREAFDWVIGEIETRFLMSLVAPGEMIGCVAAQS 1078
Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLR 511
IGEPATQMTLNTFH+AGVSAKNVTLGVPRL+EIINV+K+TKTPSL V+L+
Sbjct: 1079 IGEPATQMTLNTFHFAGVSAKNVTLGVPRLREIINVAKKTKTPSLTVFLK 1128
[149][TOP]
>UniRef100_Q6E232 RNA polymersae 2 (Fragment) n=1 Tax=Caenorhabditis sp. PS1010
RepID=Q6E232_9PELO
Length = 601
Score = 163 bits (412), Expect = 8e-39
Identities = 83/125 (66%), Positives = 101/125 (80%)
Frame = +2
Query: 161 ELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMV 340
++S+ AQ NATLL + +R++L +K + + +L +AF WLL EIE+RF QA+A GEMV
Sbjct: 220 DISKQAQYNATLLMNILLRSTLCTKKMCTSSKLNTEAFDWLLGEIESRFMQAIAQPGEMV 279
Query: 341 GATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDA 520
GA AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ KTPSL V+L G A
Sbjct: 280 GALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKQLKTPSLTVFLTGAA 339
Query: 521 VHDAE 535
DAE
Sbjct: 340 AKDAE 344
[150][TOP]
>UniRef100_Q6E225 DNA-directed RNA polymerase (Fragment) n=1 Tax=Caenorhabditis sp.
SB341 RepID=Q6E225_9PELO
Length = 622
Score = 163 bits (412), Expect = 8e-39
Identities = 82/125 (65%), Positives = 102/125 (81%)
Frame = +2
Query: 161 ELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMV 340
++S+ AQ NATLL + +R++L SK + + +L +AF WLL E+E+RF Q++A GEMV
Sbjct: 237 DISKQAQYNATLLMNILLRSTLCSKKMATSAKLNTEAFDWLLGEVESRFMQSIAQPGEMV 296
Query: 341 GATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDA 520
GA AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ KTPSL V+L+G A
Sbjct: 297 GALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKQLKTPSLTVFLQGAA 356
Query: 521 VHDAE 535
DAE
Sbjct: 357 AKDAE 361
[151][TOP]
>UniRef100_O01376 DNA-directed RNA polymerase (Fragment) n=1 Tax=unidentified
nematode RepID=O01376_9BILA
Length = 633
Score = 163 bits (412), Expect = 8e-39
Identities = 83/125 (66%), Positives = 101/125 (80%)
Frame = +2
Query: 161 ELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMV 340
++S+ AQ NATLL + +R++L +K + + +L +AF WLL EIE+RF QA+A GEMV
Sbjct: 233 DISKQAQYNATLLMNILLRSALCTKKMCTSSKLNTEAFDWLLGEIESRFMQAIAQPGEMV 292
Query: 341 GATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDA 520
GA AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ KTPSL V+L G A
Sbjct: 293 GALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKQLKTPSLTVFLTGAA 352
Query: 521 VHDAE 535
DAE
Sbjct: 353 AKDAE 357
[152][TOP]
>UniRef100_A9QMT2 RNA polymerase 2 (Fragment) n=1 Tax=Pellioditis typica
RepID=A9QMT2_9PELO
Length = 488
Score = 162 bits (411), Expect = 1e-38
Identities = 87/176 (49%), Positives = 116/176 (65%)
Frame = +2
Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
+DL+P +++ GV L + +++ D+ +S+ AQ
Sbjct: 193 TDLNPLRVIEGVRELSEKLVIVSGDD---------------------------RISKQAQ 225
Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
NATLL + +R++L SK + S +RL +AF W+L E+E RF+QA+A GEMVGA AAQS
Sbjct: 226 YNATLLMNILIRSTLCSKKMASTYRLNSEAFEWMLGEVETRFKQAIAQPGEMVGALAAQS 285
Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHD 529
+GEPATQMTLNTFH+AGVSAKNVTLGVPRL+EIINVSK+ KTPSL +L+G A D
Sbjct: 286 LGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSKQLKTPSLTCFLQGAAAKD 341
[153][TOP]
>UniRef100_A9QME0 DNA-directed RNA polymerase (Fragment) n=1 Tax=Pellioditis typica
RepID=A9QME0_9PELO
Length = 633
Score = 162 bits (411), Expect = 1e-38
Identities = 87/176 (49%), Positives = 116/176 (65%)
Frame = +2
Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
+DL+P +++ GV L + +++ D+ +S+ AQ
Sbjct: 207 TDLNPLRVIEGVRELSEKLVIVSGDD---------------------------RISKQAQ 239
Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
NATLL + +R++L SK + S +RL +AF W+L E+E RF+QA+A GEMVGA AAQS
Sbjct: 240 YNATLLMNILIRSTLCSKKMASTYRLNSEAFEWMLGEVETRFKQAIAQPGEMVGALAAQS 299
Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHD 529
+GEPATQMTLNTFH+AGVSAKNVTLGVPRL+EIINVSK+ KTPSL +L+G A D
Sbjct: 300 LGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSKQLKTPSLTCFLQGAAAKD 355
[154][TOP]
>UniRef100_Q6GYH6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Prodontorhabditis
wirthi RepID=Q6GYH6_9BILA
Length = 630
Score = 162 bits (410), Expect = 1e-38
Identities = 83/124 (66%), Positives = 99/124 (79%)
Frame = +2
Query: 164 LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 343
+S+ AQ NATLL + +R++L SK + S ++L +AF WLL EIENRFQ A+A GEMVG
Sbjct: 240 ISKQAQYNATLLTNILIRSTLCSKKMASTYKLDSEAFDWLLGEIENRFQSAIAQPGEMVG 299
Query: 344 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 523
A AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK KTPSL V+L+ D
Sbjct: 300 ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKTLKTPSLTVFLQEDVA 359
Query: 524 HDAE 535
D +
Sbjct: 360 KDRD 363
[155][TOP]
>UniRef100_Q6E223 RNA polymerase 2 (Fragment) n=1 Tax=Caenorhabditis sp. DF5070
RepID=Q6E223_9PELO
Length = 606
Score = 162 bits (410), Expect = 1e-38
Identities = 82/125 (65%), Positives = 101/125 (80%)
Frame = +2
Query: 161 ELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMV 340
++S+ AQ NATLL + +R++L +K + + +L +AF WLL E+E+RF QA+A GEMV
Sbjct: 220 DISKQAQYNATLLMNILLRSTLCTKKLCTSSKLNTEAFDWLLGEVESRFMQAIAQPGEMV 279
Query: 341 GATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDA 520
GA AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ KTPSL V+L G A
Sbjct: 280 GALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKQLKTPSLTVFLIGAA 339
Query: 521 VHDAE 535
DAE
Sbjct: 340 ARDAE 344
[156][TOP]
>UniRef100_Q1PQE9 CG1554 (Fragment) n=1 Tax=Drosophila miranda RepID=Q1PQE9_DROMI
Length = 335
Score = 162 bits (410), Expect = 1e-38
Identities = 83/124 (66%), Positives = 99/124 (79%)
Frame = +2
Query: 164 LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 343
+S+ A NATLLFQ +R++L +K V E RL+ +AF WL+ EIE RFQQA A GEMVG
Sbjct: 18 ISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLIGEIETRFQQAQANPGEMVG 77
Query: 344 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 523
A AAQS+GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN+SK+ K PSL V+L G A
Sbjct: 78 ALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGGAA 137
Query: 524 HDAE 535
DAE
Sbjct: 138 RDAE 141
[157][TOP]
>UniRef100_A9QMF1 RNA polymerase 2 (Fragment) n=1 Tax=Pelodera punctata
RepID=A9QMF1_9PELO
Length = 605
Score = 162 bits (410), Expect = 1e-38
Identities = 82/124 (66%), Positives = 100/124 (80%)
Frame = +2
Query: 164 LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 343
+S+ AQ NATLL + +R++L SK + ++RL + F WLL EIE+RF QA+A GEMVG
Sbjct: 215 ISKQAQYNATLLMNILIRSTLCSKQMAEKYRLNEEGFEWLLGEIEHRFNQAVAQPGEMVG 274
Query: 344 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 523
A AAQS+GEPATQMTLNTFH+AGVSAKNVTLGVPRL+EIINVSK +TPSL V+L+G A
Sbjct: 275 ALAAQSLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSKSPRTPSLTVFLQGAAA 334
Query: 524 HDAE 535
DAE
Sbjct: 335 KDAE 338
[158][TOP]
>UniRef100_A7S8F9 DNA-directed RNA polymerase n=1 Tax=Nematostella vectensis
RepID=A7S8F9_NEMVE
Length = 1929
Score = 162 bits (409), Expect = 2e-38
Identities = 93/178 (52%), Positives = 113/178 (63%)
Frame = +2
Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
SDL P +++ GV L + V+ + ED +S+ AQ
Sbjct: 998 SDLHPLRVIEGVRELSKKL-VIVAGED--------------------------HISKQAQ 1030
Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
NATLLF + +R++L +K V E L+ +AF WLL EIE RF + GEMVGA AAQS
Sbjct: 1031 FNATLLFNILLRSTLCTKRVAEEFHLSSEAFEWLLGEIETRFNHSHVKPGEMVGALAAQS 1090
Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ KTPSL V+L G A DAE
Sbjct: 1091 LGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKKPKTPSLTVFLIGQAARDAE 1148
[159][TOP]
>UniRef100_A9QMQ9 DNA-directed RNA polymerase (Fragment) n=1 Tax=Caenorhabditis sp.
JU727 RepID=A9QMQ9_9PELO
Length = 620
Score = 161 bits (408), Expect = 2e-38
Identities = 83/125 (66%), Positives = 99/125 (79%)
Frame = +2
Query: 161 ELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMV 340
E+S+ AQ NATLL + +R++L +K + + +L +AF WLL EIE RFQ A+A GEMV
Sbjct: 237 EISKQAQYNATLLMNILLRSTLCTKKMCTSAKLNTEAFDWLLGEIETRFQSAIAQPGEMV 296
Query: 341 GATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDA 520
GA AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ KTPSL V+L G A
Sbjct: 297 GALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKQLKTPSLTVFLTGAA 356
Query: 521 VHDAE 535
D E
Sbjct: 357 AKDPE 361
[160][TOP]
>UniRef100_A8BDP1 RNA polymerase II largest subunit (Fragment) n=1 Tax=Paragordius
varius RepID=A8BDP1_PARVA
Length = 467
Score = 161 bits (408), Expect = 2e-38
Identities = 90/178 (50%), Positives = 115/178 (64%)
Frame = +2
Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
SDL P K+VRGV+ L + V+ + + +S+ AQ
Sbjct: 142 SDLHPLKVVRGVQELSEKLIVV---------------------------KGVDRISQRAQ 174
Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
L+AT L +R++L ++ V E +L+ AF W+L EIE+RF+ +L GEMVG +AQS
Sbjct: 175 LDATFLMNALIRSTLCTRRVAEEFKLSSDAFDWVLGEIESRFRSSLVDPGEMVGPLSAQS 234
Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSKR KTPSL V+L+G A DAE
Sbjct: 235 LGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKRPKTPSLTVFLKGAAARDAE 292
[161][TOP]
>UniRef100_B9SXC0 DNA-directed RNA polymerase n=1 Tax=Ricinus communis
RepID=B9SXC0_RICCO
Length = 1855
Score = 160 bits (406), Expect = 4e-38
Identities = 88/169 (52%), Positives = 112/169 (66%)
Frame = +2
Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
SD+ P + V V+ L R +V+ D+ V+A Q
Sbjct: 998 SDIHPMEAVEAVDKLQERLKVVPGDDPLSVEA---------------------------Q 1030
Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
NATL F + +R++LASK VL ++RLTR+AF W++ EIE+RF Q+L GEM+G AAQS
Sbjct: 1031 KNATLFFGILLRSTLASKRVLEDYRLTREAFDWVIGEIESRFLQSLVAPGEMIGCVAAQS 1090
Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYL 508
IGEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINV+K+ KTPSL ++L
Sbjct: 1091 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSIFL 1139
[162][TOP]
>UniRef100_A9U396 DNA-directed RNA polymerase n=1 Tax=Physcomitrella patens subsp.
patens RepID=A9U396_PHYPA
Length = 1742
Score = 160 bits (406), Expect = 4e-38
Identities = 89/170 (52%), Positives = 112/170 (65%)
Frame = +2
Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
SD+ P +IV VE L R RV+ ++ ++S AQ
Sbjct: 1001 SDMHPMEIVEAVENLQERLRVVPGND---------------------------QISMEAQ 1033
Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
NATL F +R++LASK VL ++RLTR+AF W++ E+E RF +L GEM+G AAQS
Sbjct: 1034 RNATLFFGCLLRSTLASKRVLKDYRLTREAFEWVIGEVETRFLMSLVAPGEMIGCVAAQS 1093
Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLR 511
IGEPATQMTLNTFH+AGVSAKNVTLGVPRL+EIINV+K+ KTPSL VYL+
Sbjct: 1094 IGEPATQMTLNTFHFAGVSAKNVTLGVPRLREIINVAKKIKTPSLTVYLK 1143
[163][TOP]
>UniRef100_A9QME7 DNA-directed RNA polymerase (Fragment) n=1 Tax=Pellioditis
mediterranea RepID=A9QME7_9PELO
Length = 618
Score = 160 bits (406), Expect = 4e-38
Identities = 88/178 (49%), Positives = 114/178 (64%)
Frame = +2
Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
+DLSP +++ GV + + ++ ++ +S+ AQ
Sbjct: 208 TDLSPLRVIEGVRDMSEKLIIVAGED---------------------------RISKQAQ 240
Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
NATLL + +R++L SK + ++L +AF WLL E+E RF+QA+A GEMVG AAQS
Sbjct: 241 YNATLLMNILLRSTLCSKKMAVSYKLNSEAFEWLLGEVETRFKQAIAQPGEMVGPLAAQS 300
Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK KTPSL V+L G A DAE
Sbjct: 301 LGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKTLKTPSLTVFLLGAAAKDAE 358
[164][TOP]
>UniRef100_A9QMS3 RNA polymerase 2 (Fragment) n=1 Tax=Pelodera punctata
RepID=A9QMS3_9PELO
Length = 363
Score = 160 bits (405), Expect = 5e-38
Identities = 81/124 (65%), Positives = 99/124 (79%)
Frame = +2
Query: 164 LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 343
+S+ AQ NATLL + +R++L SK + ++RL + F WLL EIE+RF QA+A GEMVG
Sbjct: 9 ISKQAQYNATLLMNILIRSTLCSKQMAEKYRLNEEGFEWLLGEIEHRFNQAVAQPGEMVG 68
Query: 344 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 523
A A QS+GEPATQMTLNTFH+AGVSAKNVTLGVPRL+EIINVSK +TPSL V+L+G A
Sbjct: 69 ALAXQSLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSKSPRTPSLTVFLQGAAA 128
Query: 524 HDAE 535
DAE
Sbjct: 129 KDAE 132
[165][TOP]
>UniRef100_Q010D7 DNA-directed RNA polymerase n=1 Tax=Ostreococcus tauri
RepID=Q010D7_OSTTA
Length = 1673
Score = 160 bits (404), Expect = 7e-38
Identities = 80/122 (65%), Positives = 98/122 (80%)
Frame = +2
Query: 164 LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 343
LS AQ N TLLF HVRA+LA+K VL +H+LTR F W++ E+E+RF+ ALAP G+ +G
Sbjct: 1022 LSIEAQRNGTLLFFAHVRANLAAKRVLKDHKLTRAGFDWVIGEVESRFKMALAPPGDGIG 1081
Query: 344 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 523
AAQSIGEPATQMTLNTFH+AGVSAKNVTLGVPRL+EIIN++K+ KTPSL V L+ +
Sbjct: 1082 VVAAQSIGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINIAKQIKTPSLTVALKPEFA 1141
Query: 524 HD 529
D
Sbjct: 1142 SD 1143
[166][TOP]
>UniRef100_A4S3M0 DNA-directed RNA polymerase n=1 Tax=Ostreococcus lucimarinus CCE9901
RepID=A4S3M0_OSTLU
Length = 1646
Score = 160 bits (404), Expect = 7e-38
Identities = 80/122 (65%), Positives = 97/122 (79%)
Frame = +2
Query: 164 LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 343
LS AQ N T+LF HVRA+LA+K VL EH+LTR F W++ EIE+RF+ ALAP G+ +G
Sbjct: 1002 LSVEAQRNGTMLFFAHVRANLAAKRVLKEHKLTRAGFDWVIGEIESRFKMALAPPGDGIG 1061
Query: 344 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 523
AAQSIGEPATQMTLNTFH+AGVSAKNVTLGVPRL+EIIN++K KTPSL + L+ +
Sbjct: 1062 TVAAQSIGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINIAKSIKTPSLTIALKPELA 1121
Query: 524 HD 529
D
Sbjct: 1122 GD 1123
[167][TOP]
>UniRef100_Q6E226 DNA-directed RNA polymerase (Fragment) n=1 Tax=Caenorhabditis
plicata RepID=Q6E226_9PELO
Length = 636
Score = 159 bits (403), Expect = 9e-38
Identities = 81/125 (64%), Positives = 98/125 (78%)
Frame = +2
Query: 161 ELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMV 340
++S AQ NATLL + +R++L SK + + +L +AF WLL E+E+RF QA+A GEMV
Sbjct: 237 DISRQAQYNATLLMNILLRSTLCSKKLCTTSKLNTEAFDWLLGEVESRFNQAIAQPGEMV 296
Query: 341 GATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDA 520
GA AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ KTPSL +L G A
Sbjct: 297 GALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKQLKTPSLTCFLVGSA 356
Query: 521 VHDAE 535
D E
Sbjct: 357 AKDVE 361
[168][TOP]
>UniRef100_B4YVW5 RNA polymerase II large subunit (Fragment) n=1 Tax=Meloidogyne
mayaguensis RepID=B4YVW5_MELMY
Length = 219
Score = 159 bits (403), Expect = 9e-38
Identities = 82/124 (66%), Positives = 98/124 (79%)
Frame = +2
Query: 164 LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 343
+S+ AQ NAT+L + +R+ L S + +H+L +AF WLL EIE RF A+A GEMVG
Sbjct: 2 ISKQAQENATILMNILLRSMLCSLKMAKQHKLNEEAFEWLLGEIETRFCTAIAQPGEMVG 61
Query: 344 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 523
A AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ KTPSL V+L+G A
Sbjct: 62 ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKKPKTPSLTVFLKGLAA 121
Query: 524 HDAE 535
DAE
Sbjct: 122 KDAE 125
[169][TOP]
>UniRef100_A9QMF8 DNA-directed RNA polymerase (Fragment) n=1 Tax=Rhabditis sp. SB347
RepID=A9QMF8_9BILA
Length = 621
Score = 159 bits (403), Expect = 9e-38
Identities = 89/178 (50%), Positives = 115/178 (64%)
Frame = +2
Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
+DL+P +++ GV L + ++ S ED +S+ AQ
Sbjct: 211 TDLNPIRVIEGVRELSSKL-IIVSGED--------------------------RISKQAQ 243
Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
NATLL + +R++L SK + S ++L +AF WLL E+E RF+QA+A GA AAQS
Sbjct: 244 YNATLLMNILIRSTLCSKKMASTYKLNSEAFEWLLGEVETRFKQAIAXXXXXXGALAAQS 303
Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ KTPSL V+L+G A DAE
Sbjct: 304 LGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKQLKTPSLTVFLQGSAAKDAE 361
[170][TOP]
>UniRef100_A9QME2 RNA polymerase 2 (Fragment) n=1 Tax=Rhabditis blumi
RepID=A9QME2_9BILA
Length = 151
Score = 159 bits (402), Expect = 1e-37
Identities = 80/116 (68%), Positives = 96/116 (82%)
Frame = +2
Query: 188 ATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIG 367
ATLL + +R++L S+ + +H+L +AF WLL E+E RF+QA+A GEMVGA AAQS+G
Sbjct: 1 ATLLMNILLRSTLCSRKMAFQHKLNAEAFEWLLGEVETRFKQAIAQPGEMVGALAAQSLG 60
Query: 368 EPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
EPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ KTPSLVV+L G A DAE
Sbjct: 61 EPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKQLKTPSLVVFLTGPAAKDAE 116
[171][TOP]
>UniRef100_A8BDP3 RNA polymerase II largest subunit (Fragment) n=1 Tax=Priapulus
caudatus RepID=A8BDP3_PRICU
Length = 434
Score = 159 bits (402), Expect = 1e-37
Identities = 83/129 (64%), Positives = 98/129 (75%)
Frame = +2
Query: 149 EALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPA 328
E LS+ AQ NATL +R++L +K V E++LT ++F WLL E+E+RFQ A A
Sbjct: 164 EGEDRLSKQAQENATLNINAMLRSTLCTKRVAEEYKLTTESFEWLLGEVESRFQHAQAQP 223
Query: 329 GEMVGATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYL 508
GEMVG AAQS+GEPATQMTLNTFHYAGVSAKNVTLG PRL+EIINVSK+ KTPSL V+L
Sbjct: 224 GEMVGPLAAQSLGEPATQMTLNTFHYAGVSAKNVTLGXPRLKEIINVSKKPKTPSLTVFL 283
Query: 509 RGDAVHDAE 535
G A DAE
Sbjct: 284 TGQAARDAE 292
[172][TOP]
>UniRef100_UPI0000E48673 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
(RPB1) isoform 1 n=1 Tax=Strongylocentrotus purpuratus
RepID=UPI0000E48673
Length = 1880
Score = 159 bits (401), Expect = 2e-37
Identities = 81/124 (65%), Positives = 98/124 (79%)
Frame = +2
Query: 164 LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 343
+S AQ NAT L +R++L+S V EH+L+ ++F WLL EIE RF Q+LA AGEMVG
Sbjct: 1023 ISRQAQENATYLMNCLIRSTLSSTRVAQEHKLSPESFEWLLGEIETRFNQSLAMAGEMVG 1082
Query: 344 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 523
A AAQS+GEPATQMTLNTFH+AGVSAKNVTLGVPRL+EIIN+SK+ +TPSL +L G A
Sbjct: 1083 ALAAQSLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINISKKPRTPSLTCFLLGKAA 1142
Query: 524 HDAE 535
DAE
Sbjct: 1143 RDAE 1146
[173][TOP]
>UniRef100_UPI0000E48672 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
(RPB1) isoform 2 n=1 Tax=Strongylocentrotus purpuratus
RepID=UPI0000E48672
Length = 1913
Score = 159 bits (401), Expect = 2e-37
Identities = 81/124 (65%), Positives = 98/124 (79%)
Frame = +2
Query: 164 LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 343
+S AQ NAT L +R++L+S V EH+L+ ++F WLL EIE RF Q+LA AGEMVG
Sbjct: 1029 ISRQAQENATYLMNCLIRSTLSSTRVAQEHKLSPESFEWLLGEIETRFNQSLAMAGEMVG 1088
Query: 344 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 523
A AAQS+GEPATQMTLNTFH+AGVSAKNVTLGVPRL+EIIN+SK+ +TPSL +L G A
Sbjct: 1089 ALAAQSLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINISKKPRTPSLTCFLLGKAA 1148
Query: 524 HDAE 535
DAE
Sbjct: 1149 RDAE 1152
[174][TOP]
>UniRef100_UPI0000E48671 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
(RPB1) isoform 3 n=1 Tax=Strongylocentrotus purpuratus
RepID=UPI0000E48671
Length = 1921
Score = 159 bits (401), Expect = 2e-37
Identities = 81/124 (65%), Positives = 98/124 (79%)
Frame = +2
Query: 164 LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 343
+S AQ NAT L +R++L+S V EH+L+ ++F WLL EIE RF Q+LA AGEMVG
Sbjct: 1029 ISRQAQENATYLMNCLIRSTLSSTRVAQEHKLSPESFEWLLGEIETRFNQSLAMAGEMVG 1088
Query: 344 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 523
A AAQS+GEPATQMTLNTFH+AGVSAKNVTLGVPRL+EIIN+SK+ +TPSL +L G A
Sbjct: 1089 ALAAQSLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINISKKPRTPSLTCFLLGKAA 1148
Query: 524 HDAE 535
DAE
Sbjct: 1149 RDAE 1152
[175][TOP]
>UniRef100_Q6E224 DNA-directed RNA polymerase (Fragment) n=1 Tax=Caenorhabditis
drosophilae RepID=Q6E224_9PELO
Length = 633
Score = 159 bits (401), Expect = 2e-37
Identities = 80/125 (64%), Positives = 100/125 (80%)
Frame = +2
Query: 161 ELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMV 340
++S+ AQ NATLL + +R++L +K + + +L +AF WLL E+E+RF QA+A GEMV
Sbjct: 236 DISKQAQYNATLLMNILLRSTLCTKKLCTSSKLNTEAFDWLLGEVESRFMQAIAQPGEMV 295
Query: 341 GATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDA 520
GA AAQS+GEPA QMTLNTFHYAGVSAKNVTLGVPRL+EIINV+K+ KTPSL V+L G A
Sbjct: 296 GALAAQSLGEPAPQMTLNTFHYAGVSAKNVTLGVPRLKEIINVAKQLKTPSLTVFLIGAA 355
Query: 521 VHDAE 535
DAE
Sbjct: 356 ARDAE 360
[176][TOP]
>UniRef100_C4QEL8 DNA-directed RNA polymerase n=1 Tax=Schistosoma mansoni
RepID=C4QEL8_SCHMA
Length = 1785
Score = 159 bits (401), Expect = 2e-37
Identities = 82/124 (66%), Positives = 97/124 (78%)
Frame = +2
Query: 164 LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 343
LS+ A NATLL +RASL +K V+ ++RL+ +A W+L E+ RFQQA GEMVG
Sbjct: 919 LSKEANANATLLLSSLIRASLCAKKVIIDYRLSYEALDWVLGEVRARFQQAHIHPGEMVG 978
Query: 344 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 523
A AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSKR KTPS+ ++L G A
Sbjct: 979 ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKRPKTPSMTIFLTGQAA 1038
Query: 524 HDAE 535
DAE
Sbjct: 1039 RDAE 1042
[177][TOP]
>UniRef100_B4YVX3 RNA polymerase II large subunit (Fragment) n=1 Tax=Meloidogyne
hapla RepID=B4YVX3_MELHA
Length = 219
Score = 159 bits (401), Expect = 2e-37
Identities = 82/124 (66%), Positives = 97/124 (78%)
Frame = +2
Query: 164 LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 343
LS+ AQ NAT+L + +R+ L S + +H+L +AF WLL EIE RF A+ GEMVG
Sbjct: 2 LSKQAQENATILMNILLRSMLCSLKMAKQHKLNEEAFEWLLGEIETRFCTAIVQPGEMVG 61
Query: 344 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 523
A AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ KTPSL V+L+G A
Sbjct: 62 ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKKPKTPSLTVFLKGLAA 121
Query: 524 HDAE 535
DAE
Sbjct: 122 KDAE 125
[178][TOP]
>UniRef100_B4YVX2 RNA polymerase II large subunit (Fragment) n=1 Tax=Meloidogyne
hapla RepID=B4YVX2_MELHA
Length = 219
Score = 158 bits (399), Expect = 3e-37
Identities = 81/124 (65%), Positives = 97/124 (78%)
Frame = +2
Query: 164 LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 343
+S+ AQ NAT+L + +R+ L S + +H+L +AF WLL EIE RF A+ GEMVG
Sbjct: 2 ISKQAQENATILMNILLRSMLCSLKMAKQHKLNEEAFEWLLGEIETRFCTAIVQPGEMVG 61
Query: 344 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 523
A AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ KTPSL V+L+G A
Sbjct: 62 ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKKPKTPSLTVFLKGLAA 121
Query: 524 HDAE 535
DAE
Sbjct: 122 KDAE 125
[179][TOP]
>UniRef100_B4YVW9 RNA polymerase II large subunit (Fragment) n=1 Tax=Meloidogyne
hapla RepID=B4YVW9_MELHA
Length = 219
Score = 158 bits (399), Expect = 3e-37
Identities = 81/124 (65%), Positives = 97/124 (78%)
Frame = +2
Query: 164 LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 343
+S+ AQ NAT+L + +R+ L S + +H+L +AF WLL EIE RF A+ GEMVG
Sbjct: 2 ISKQAQENATILMNILLRSMLCSLKMAKQHKLNEEAFEWLLGEIETRFCTAIVQPGEMVG 61
Query: 344 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 523
A AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ KTPSL V+L+G A
Sbjct: 62 ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKKPKTPSLTVFLKGLAA 121
Query: 524 HDAE 535
DAE
Sbjct: 122 KDAE 125
[180][TOP]
>UniRef100_B4YVW7 RNA polymerase II large subunit (Fragment) n=1 Tax=Meloidogyne
hapla RepID=B4YVW7_MELHA
Length = 219
Score = 158 bits (399), Expect = 3e-37
Identities = 81/124 (65%), Positives = 97/124 (78%)
Frame = +2
Query: 164 LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 343
+S+ AQ NAT+L + +R+ L S + +H+L +AF WLL EIE RF A+ GEMVG
Sbjct: 2 ISKQAQENATILMNILLRSMLCSLKMAKQHKLNEEAFEWLLGEIETRFCTAIVQPGEMVG 61
Query: 344 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 523
A AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ KTPSL V+L+G A
Sbjct: 62 ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKKPKTPSLTVFLKGLAA 121
Query: 524 HDAE 535
DAE
Sbjct: 122 KDAE 125
[181][TOP]
>UniRef100_B4YVW2 RNA polymerase II large subunit (Fragment) n=1 Tax=Meloidogyne
mayaguensis RepID=B4YVW2_MELMY
Length = 219
Score = 158 bits (399), Expect = 3e-37
Identities = 81/124 (65%), Positives = 97/124 (78%)
Frame = +2
Query: 164 LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 343
+S+ AQ NAT+L + +R+ L S + +H+L +AF WLL EIE RF A+ GEMVG
Sbjct: 2 ISKQAQENATILMNILLRSMLCSLKMAKQHKLNEEAFEWLLGEIETRFCTAIVQPGEMVG 61
Query: 344 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 523
A AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ KTPSL V+L+G A
Sbjct: 62 ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKKPKTPSLTVFLKGLAA 121
Query: 524 HDAE 535
DAE
Sbjct: 122 KDAE 125
[182][TOP]
>UniRef100_B4YVU6 RNA polymerase II large subunit (Fragment) n=2 Tax=Meloidogyne
incognita group RepID=B4YVU6_MELAR
Length = 219
Score = 158 bits (399), Expect = 3e-37
Identities = 81/124 (65%), Positives = 97/124 (78%)
Frame = +2
Query: 164 LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 343
+S+ AQ NAT+L + +R+ L S + +H+L +AF WLL EIE RF A+ GEMVG
Sbjct: 2 ISKQAQENATILMNILLRSMLCSLKMAKQHKLNEEAFEWLLGEIETRFCTAIVQPGEMVG 61
Query: 344 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 523
A AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ KTPSL V+L+G A
Sbjct: 62 ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKKPKTPSLTVFLKGLAA 121
Query: 524 HDAE 535
DAE
Sbjct: 122 KDAE 125
[183][TOP]
>UniRef100_B4YVU3 RNA polymerase II large subunit (Fragment) n=5 Tax=Meloidogyne
RepID=B4YVU3_MELAR
Length = 219
Score = 158 bits (399), Expect = 3e-37
Identities = 81/124 (65%), Positives = 97/124 (78%)
Frame = +2
Query: 164 LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 343
+S+ AQ NAT+L + +R+ L S + +H+L +AF WLL EIE RF A+ GEMVG
Sbjct: 2 ISKQAQENATILMNILLRSMLCSLKMAKQHKLNEEAFEWLLGEIETRFCTAIVQPGEMVG 61
Query: 344 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 523
A AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ KTPSL V+L+G A
Sbjct: 62 ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKKPKTPSLTVFLKGLAA 121
Query: 524 HDAE 535
DAE
Sbjct: 122 KDAE 125
[184][TOP]
>UniRef100_A7R1R2 DNA-directed RNA polymerase n=1 Tax=Vitis vinifera
RepID=A7R1R2_VITVI
Length = 429
Score = 157 bits (398), Expect = 3e-37
Identities = 80/116 (68%), Positives = 98/116 (84%)
Frame = +2
Query: 164 LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 343
+S AQ NATLLF + +R++ +SK VL+E+RL+R+AF W++ EIE+RF Q+L GEM+G
Sbjct: 282 ISMEAQKNATLLFNILLRSTFSSKRVLNEYRLSREAFDWVIGEIESRFLQSLVSPGEMIG 341
Query: 344 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLR 511
AAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINV+K KTPSL VYL+
Sbjct: 342 CIAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKIIKTPSLSVYLK 397
[185][TOP]
>UniRef100_Q9BMP3 DNA-directed RNA polymerase (Fragment) n=1 Tax=Monosiga brevicollis
RepID=Q9BMP3_MONBE
Length = 1743
Score = 157 bits (398), Expect = 3e-37
Identities = 87/176 (49%), Positives = 110/176 (62%)
Frame = +2
Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
+DLSP+ + + + R V+ D+ LS+ AQ
Sbjct: 920 TDLSPAHVAQAIRTFTDRLVVIPGDDP---------------------------LSKVAQ 952
Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
NATLLF ++R+ L+S+ + HRL KAF W+L E+E RF QA A GEMVGA AAQS
Sbjct: 953 RNATLLFNCNLRSVLSSRQCIVRHRLNTKAFDWILGEVEKRFMQAQAQPGEMVGALAAQS 1012
Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHD 529
+GEPATQMTLNTFH AGVSAKNVTLGVPRL+EIINVSK+ KTPS+V+++ D D
Sbjct: 1013 LGEPATQMTLNTFHLAGVSAKNVTLGVPRLKEIINVSKKPKTPSMVLFIGEDKYQD 1068
[186][TOP]
>UniRef100_A9V5W6 DNA-directed RNA polymerase n=1 Tax=Monosiga brevicollis
RepID=A9V5W6_MONBE
Length = 1307
Score = 157 bits (398), Expect = 3e-37
Identities = 87/176 (49%), Positives = 110/176 (62%)
Frame = +2
Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
+DLSP+ + + + R V+ D+ LS+ AQ
Sbjct: 484 TDLSPAHVAQAIRTFTDRLVVIPGDDP---------------------------LSKVAQ 516
Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
NATLLF ++R+ L+S+ + HRL KAF W+L E+E RF QA A GEMVGA AAQS
Sbjct: 517 RNATLLFNCNLRSVLSSRQCIVRHRLNTKAFDWILGEVEKRFMQAQAQPGEMVGALAAQS 576
Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHD 529
+GEPATQMTLNTFH AGVSAKNVTLGVPRL+EIINVSK+ KTPS+V+++ D D
Sbjct: 577 LGEPATQMTLNTFHLAGVSAKNVTLGVPRLKEIINVSKKPKTPSMVLFIGEDKYQD 632
[187][TOP]
>UniRef100_A9QME5 RNA polymerase 2 (Fragment) n=1 Tax=Oscheius dolichura
RepID=A9QME5_9BILA
Length = 371
Score = 157 bits (398), Expect = 3e-37
Identities = 80/116 (68%), Positives = 96/116 (82%)
Frame = +2
Query: 188 ATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIG 367
ATLL + +R++L +K + S H+L ++AF WLL EIE RF+ A+A GEMVGA AAQS+G
Sbjct: 1 ATLLMNILLRSTLCAKKMASTHKLNQEAFEWLLGEIETRFKAAVAQPGEMVGALAAQSLG 60
Query: 368 EPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
EPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ KTPSL V+L+G A DAE
Sbjct: 61 EPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKQLKTPSLTVFLQGAAAKDAE 116
[188][TOP]
>UniRef100_Q6JTX1 RNA polymerase II largest subunit (Fragment) n=1 Tax=Isohypsibius
elegans RepID=Q6JTX1_9BILA
Length = 304
Score = 157 bits (397), Expect = 5e-37
Identities = 89/178 (50%), Positives = 112/178 (62%)
Frame = +2
Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
+DL P ++V G+ L+ + V+ ED LS AQ
Sbjct: 133 TDLHPVRVVEGLNELMKKL-VIVKGED--------------------------RLSREAQ 165
Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
NAT+L +R++L SK + E+ L +AF WLL EIE+RF Q++ GEMVGA AAQS
Sbjct: 166 ENATILMNTMLRSTLCSKRMAEEYHLNTEAFEWLLGEIESRFAQSMVQPGEMVGALAAQS 225
Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
+GEPATQMTLNTFH+AGVSAKNVTLGVPRL+E+INVSK +TPSL V+L G A DAE
Sbjct: 226 LGEPATQMTLNTFHFAGVSAKNVTLGVPRLKELINVSKNPRTPSLAVFLLGSAARDAE 283
[189][TOP]
>UniRef100_Q25151 DNA-directed RNA polymerase (Fragment) n=1 Tax=Helobdella stagnalis
RepID=Q25151_9ANNE
Length = 1337
Score = 157 bits (396), Expect = 6e-37
Identities = 82/124 (66%), Positives = 96/124 (77%)
Frame = +2
Query: 164 LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 343
LS+TA NATLL + VR++L SK V+ E L+ +AF WL+ EIE++F QA GEMVG
Sbjct: 936 LSKTANTNATLLMNILVRSTLCSKRVIEEFHLSTEAFEWLMGEIESKFIQARVQPGEMVG 995
Query: 344 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 523
A AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ + PSL V L G
Sbjct: 996 ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKKPRAPSLTVILIGQPA 1055
Query: 524 HDAE 535
DAE
Sbjct: 1056 RDAE 1059
[190][TOP]
>UniRef100_B4YVX9 RNA polymerase II large subunit (Fragment) n=1 Tax=Meloidogyne
fallax RepID=B4YVX9_9BILA
Length = 219
Score = 157 bits (396), Expect = 6e-37
Identities = 79/124 (63%), Positives = 98/124 (79%)
Frame = +2
Query: 164 LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 343
+S+ AQ NAT+L + +R++L S + +H+L +AF WLL E+E RF A+ GEMVG
Sbjct: 2 ISKQAQENATILMNILLRSALCSLKMAKQHKLNEEAFEWLLGEVETRFCTAVVQPGEMVG 61
Query: 344 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 523
A AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ +TPSL V+L+G A
Sbjct: 62 ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKKPRTPSLTVFLKGLAA 121
Query: 524 HDAE 535
DAE
Sbjct: 122 KDAE 125
[191][TOP]
>UniRef100_B4YVX6 RNA polymerase II large subunit (Fragment) n=1 Tax=Meloidogyne
fallax RepID=B4YVX6_9BILA
Length = 219
Score = 157 bits (396), Expect = 6e-37
Identities = 79/124 (63%), Positives = 98/124 (79%)
Frame = +2
Query: 164 LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 343
+S+ AQ NAT+L + +R++L S + +H+L +AF WLL E+E RF A+ GEMVG
Sbjct: 2 ISKQAQENATILMNILLRSALCSLKMAKQHKLNEEAFEWLLGEVETRFCTAVVQPGEMVG 61
Query: 344 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 523
A AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ +TPSL V+L+G A
Sbjct: 62 ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKKPRTPSLTVFLKGLAA 121
Query: 524 HDAE 535
DAE
Sbjct: 122 KDAE 125
[192][TOP]
>UniRef100_B4YVX4 RNA polymerase II large subunit (Fragment) n=1 Tax=Meloidogyne
chitwoodi RepID=B4YVX4_MELCH
Length = 219
Score = 157 bits (396), Expect = 6e-37
Identities = 79/124 (63%), Positives = 98/124 (79%)
Frame = +2
Query: 164 LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 343
+S+ AQ NAT+L + +R++L S + +H+L +AF WLL E+E RF A+ GEMVG
Sbjct: 2 ISKQAQENATILMNILLRSALCSLKMAKQHKLNEEAFEWLLGEVETRFCTAVVQPGEMVG 61
Query: 344 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 523
A AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ +TPSL V+L+G A
Sbjct: 62 ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKKPRTPSLTVFLKGLAA 121
Query: 524 HDAE 535
DAE
Sbjct: 122 KDAE 125
[193][TOP]
>UniRef100_Q4P7Q0 DNA-directed RNA polymerase n=1 Tax=Ustilago maydis
RepID=Q4P7Q0_USTMA
Length = 1774
Score = 157 bits (396), Expect = 6e-37
Identities = 84/169 (49%), Positives = 115/169 (68%)
Frame = +2
Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
+DLSP++++ G+ +L R V+ D D I+RE AQ
Sbjct: 991 TDLSPAEVIIGLRNVLDRLIVIRGD-----DPISRE----------------------AQ 1023
Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
+NATLLF++H+R+ L SK+V+ +H + ++A+ W+L EIE +F +++A GEM G AAQS
Sbjct: 1024 MNATLLFKIHLRSYLCSKMVIEQHHINKEAWEWILGEIEGQFARSVANPGEMCGTLAAQS 1083
Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYL 508
IGEPATQMTLNTFHYAGVS+KNVTLGVPRL+EIIN ++ KTPS+ VYL
Sbjct: 1084 IGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEIINCAENIKTPSVTVYL 1132
[194][TOP]
>UniRef100_B4YVX0 RNA polymerase II large subunit (Fragment) n=1 Tax=Meloidogyne
hapla RepID=B4YVX0_MELHA
Length = 219
Score = 156 bits (395), Expect = 8e-37
Identities = 80/124 (64%), Positives = 96/124 (77%)
Frame = +2
Query: 164 LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 343
+S+ AQ NAT+L + +R+ L S + +H+L +AF WLL EIE RF A+ GEMVG
Sbjct: 2 ISKQAQENATILMNILLRSMLCSLKMAKQHKLNEEAFEWLLGEIETRFCTAIVQPGEMVG 61
Query: 344 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 523
A AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ KTPSL +L+G A
Sbjct: 62 ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKKPKTPSLTAFLKGLAA 121
Query: 524 HDAE 535
DAE
Sbjct: 122 KDAE 125
[195][TOP]
>UniRef100_B4YVU7 RNA polymerase II large subunit (Fragment) n=1 Tax=Meloidogyne
javanica RepID=B4YVU7_MELJA
Length = 219
Score = 156 bits (395), Expect = 8e-37
Identities = 80/124 (64%), Positives = 96/124 (77%)
Frame = +2
Query: 164 LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 343
+S+ Q NAT+L + +R+ L S + +H+L +AF WLL EIE RF A+ GEMVG
Sbjct: 2 ISKQTQENATILMNILLRSMLCSLKMAKQHKLNEEAFEWLLGEIETRFCTAIVQPGEMVG 61
Query: 344 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 523
A AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ KTPSL V+L+G A
Sbjct: 62 ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKKPKTPSLTVFLKGLAA 121
Query: 524 HDAE 535
DAE
Sbjct: 122 KDAE 125
[196][TOP]
>UniRef100_B4YVU9 RNA polymerase II large subunit (Fragment) n=1 Tax=Meloidogyne
javanica RepID=B4YVU9_MELJA
Length = 219
Score = 156 bits (394), Expect = 1e-36
Identities = 80/124 (64%), Positives = 96/124 (77%)
Frame = +2
Query: 164 LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 343
+S+ AQ NAT+L + +R+ L + +H+L +AF WLL EIE RF A+ GEMVG
Sbjct: 2 ISKQAQENATILMNILLRSMLCPLKMAKQHKLNEEAFEWLLGEIETRFCTAIVQPGEMVG 61
Query: 344 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 523
A AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ KTPSL V+L+G A
Sbjct: 62 ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKKPKTPSLTVFLKGLAA 121
Query: 524 HDAE 535
DAE
Sbjct: 122 KDAE 125
[197][TOP]
>UniRef100_B4YVW8 RNA polymerase II large subunit (Fragment) n=1 Tax=Meloidogyne
hapla RepID=B4YVW8_MELHA
Length = 219
Score = 155 bits (393), Expect = 1e-36
Identities = 80/124 (64%), Positives = 96/124 (77%)
Frame = +2
Query: 164 LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 343
+S+ AQ NAT+L + +R+ L S + +H+L +AF WLL EIE RF A+ GEMVG
Sbjct: 2 ISKQAQENATILMNILLRSMLCSLKMAKQHKLNEEAFEWLLGEIETRFCTAIVQPGEMVG 61
Query: 344 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 523
A AAQS+GEPATQMTLNTFHYA VSAKNVTLGVPRL+EIINVSK+ KTPSL V+L+G A
Sbjct: 62 ALAAQSLGEPATQMTLNTFHYASVSAKNVTLGVPRLKEIINVSKKPKTPSLTVFLKGLAA 121
Query: 524 HDAE 535
DAE
Sbjct: 122 KDAE 125
[198][TOP]
>UniRef100_B4YVV9 RNA polymerase II large subunit (Fragment) n=1 Tax=Meloidogyne
incognita RepID=B4YVV9_MELIC
Length = 219
Score = 155 bits (393), Expect = 1e-36
Identities = 80/124 (64%), Positives = 96/124 (77%)
Frame = +2
Query: 164 LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 343
+S+ AQ NAT+L + +R+ L S + +H+L +AF WLL EIE R A+ GEMVG
Sbjct: 2 ISKQAQENATILMNILLRSMLCSLKMAKQHKLNEEAFEWLLGEIETRLCTAIVQPGEMVG 61
Query: 344 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 523
A AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ KTPSL V+L+G A
Sbjct: 62 ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKKPKTPSLTVFLKGLAA 121
Query: 524 HDAE 535
DAE
Sbjct: 122 KDAE 125
[199][TOP]
>UniRef100_B4YVV3 RNA polymerase II large subunit (Fragment) n=1 Tax=Meloidogyne
javanica RepID=B4YVV3_MELJA
Length = 219
Score = 155 bits (393), Expect = 1e-36
Identities = 80/124 (64%), Positives = 96/124 (77%)
Frame = +2
Query: 164 LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 343
+S+ AQ NAT+L + +R+ L S + +H+L +AF WLL EIE RF A+ GEMVG
Sbjct: 2 ISKQAQENATILMNILLRSMLCSLKMAKQHKLNEEAFEWLLGEIETRFCTAIVQPGEMVG 61
Query: 344 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 523
A AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPR +EIINVSK+ KTPSL V+L+G A
Sbjct: 62 ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRRKEIINVSKKPKTPSLTVFLKGLAA 121
Query: 524 HDAE 535
DAE
Sbjct: 122 KDAE 125
[200][TOP]
>UniRef100_A9QMH0 DNA-directed RNA polymerase (Fragment) n=1 Tax=Panagrellus
redivivus RepID=A9QMH0_PANRE
Length = 636
Score = 155 bits (393), Expect = 1e-36
Identities = 78/125 (62%), Positives = 98/125 (78%)
Frame = +2
Query: 161 ELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMV 340
++S AQ NATLL + +R++ A+K V ++LT +AF W++ EIE+RF QA+ GEMV
Sbjct: 238 KISRQAQENATLLMNILLRSTFATKQVAEVYKLTNEAFEWIIGEIESRFNQAIVQPGEMV 297
Query: 341 GATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDA 520
G AAQS+GEPATQMTLNTFH+AGVSAKNVTLGVPRL+EIINVSK+ KTPSL V+L G+A
Sbjct: 298 GPLAAQSLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSKQPKTPSLTVFLTGEA 357
Query: 521 VHDAE 535
E
Sbjct: 358 TRKPE 362
[201][TOP]
>UniRef100_B4YVX5 RNA polymerase II large subunit (Fragment) n=1 Tax=Meloidogyne
chitwoodi RepID=B4YVX5_MELCH
Length = 219
Score = 155 bits (392), Expect = 2e-36
Identities = 78/124 (62%), Positives = 97/124 (78%)
Frame = +2
Query: 164 LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 343
+ + AQ NAT+L + +R++L S + +H+L +AF WLL E+E RF A+ GEMVG
Sbjct: 2 IGKQAQENATILMNILLRSALCSLKMAKQHKLNEEAFEWLLGEVETRFCTAVVQPGEMVG 61
Query: 344 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 523
A AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ +TPSL V+L+G A
Sbjct: 62 ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKKPRTPSLTVFLKGLAA 121
Query: 524 HDAE 535
DAE
Sbjct: 122 KDAE 125
[202][TOP]
>UniRef100_B0DB45 DNA-directed RNA polymerase n=1 Tax=Laccaria bicolor S238N-H82
RepID=B0DB45_LACBS
Length = 1742
Score = 155 bits (392), Expect = 2e-36
Identities = 88/169 (52%), Positives = 107/169 (63%)
Frame = +2
Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
SDL P IV GV L R V+ D+ LS AQ
Sbjct: 986 SDLEPGYIVDGVNELCGRLVVVRGDDP---------------------------LSREAQ 1018
Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
LNATL F++H+RA+ AS+ VL + LTR+AF W++ E+E +F Q++ GEM G AAQS
Sbjct: 1019 LNATLTFRMHLRATFASRRVLEKFHLTREAFDWVMGEVETKFNQSVVHPGEMCGTLAAQS 1078
Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYL 508
IGEPATQMTLNTFHYAGVS+KNVTLGVPRL+EIINV+ KTPSL V+L
Sbjct: 1079 IGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEIINVATNIKTPSLTVHL 1127
[203][TOP]
>UniRef100_B4YVX8 RNA polymerase II large subunit (Fragment) n=1 Tax=Meloidogyne
chitwoodi RepID=B4YVX8_MELCH
Length = 219
Score = 155 bits (391), Expect = 2e-36
Identities = 78/123 (63%), Positives = 97/123 (78%)
Frame = +2
Query: 164 LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 343
+S+ AQ NAT+L + +R++L S + +H+L +AF WLL E+E RF A+ GEMVG
Sbjct: 2 ISKQAQENATILMNILLRSALCSLKMAKQHKLNEEAFEWLLGEVETRFCTAVVQPGEMVG 61
Query: 344 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 523
A AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ +TPSL V+L+G A
Sbjct: 62 ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKKPRTPSLTVFLKGLAA 121
Query: 524 HDA 532
DA
Sbjct: 122 KDA 124
[204][TOP]
>UniRef100_B4YVU5 RNA polymerase II large subunit (Fragment) n=1 Tax=Meloidogyne
arenaria RepID=B4YVU5_MELAR
Length = 219
Score = 155 bits (391), Expect = 2e-36
Identities = 80/124 (64%), Positives = 96/124 (77%)
Frame = +2
Query: 164 LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 343
+S+ AQ NAT+L + +R+ L S + + +L +AF WLL EIE RF A+ GEMVG
Sbjct: 2 ISKQAQENATILMNILLRSMLCSLKMAKQRKLNEEAFEWLLGEIETRFCTAIVQPGEMVG 61
Query: 344 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 523
A AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ KTPSL V+L+G A
Sbjct: 62 ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKKPKTPSLTVFLKGLAA 121
Query: 524 HDAE 535
DAE
Sbjct: 122 KDAE 125
[205][TOP]
>UniRef100_A8Q5I6 DNA-directed RNA polymerase n=1 Tax=Malassezia globosa CBS 7966
RepID=A8Q5I6_MALGO
Length = 1607
Score = 155 bits (391), Expect = 2e-36
Identities = 85/169 (50%), Positives = 111/169 (65%)
Frame = +2
Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
SDLSP +IV G++ +L+ V+ D+ ++S Q
Sbjct: 784 SDLSPFEIVDGLKRVLNNLLVVRGDD---------------------------KISRVMQ 816
Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
NATLLF++H+R+ L SK V+ H LTR+A+ W+L EIE +F +++A GEM G AAQS
Sbjct: 817 ENATLLFKIHLRSFLCSKQVIEVHHLTREAWEWVLGEIEGQFARSVAQPGEMCGTLAAQS 876
Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYL 508
IGEPATQMTLNTFHYAGVS+KNVTLGVPRL+EIIN ++ KTPS+ VYL
Sbjct: 877 IGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEIINCAENIKTPSVTVYL 925
[206][TOP]
>UniRef100_A9QMR7 DNA-directed RNA polymerase (Fragment) n=1 Tax=Bunonema reticulatum
RepID=A9QMR7_9BILA
Length = 614
Score = 154 bits (390), Expect = 3e-36
Identities = 90/176 (51%), Positives = 110/176 (62%)
Frame = +2
Query: 8 LSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLN 187
LSP +++ GV L R V+ S ED +S+ AQ N
Sbjct: 199 LSPLRVIEGVRELTARL-VIVSGED--------------------------HISQHAQEN 231
Query: 188 ATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIG 367
ATLL ++ +R++L S+ + +HRL +AF WLL E+ RFQQA A AAQS+G
Sbjct: 232 ATLLIKILLRSTLCSRKMAEQHRLNAEAFEWLLGEVXTRFQQAXXXXXXXXXALAAQSLG 291
Query: 368 EPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
EPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ KTPSL V+LRG A DAE
Sbjct: 292 EPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKQPKTPSLTVFLRGAAAKDAE 347
[207][TOP]
>UniRef100_B6JYP8 DNA-directed RNA polymerase n=1 Tax=Schizosaccharomyces japonicus
yFS275 RepID=B6JYP8_SCHJY
Length = 1748
Score = 154 bits (390), Expect = 3e-36
Identities = 88/169 (52%), Positives = 107/169 (63%)
Frame = +2
Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
+DL PS I+ GV L+ + V D D KE+ E
Sbjct: 982 TDLLPSDIIYGVRNLISKLSVFRGD-----------------------DRITKEIQE--- 1015
Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
NATLLFQ+ +R+ LA+K V+ E+ L + AF W++ EIE RFQQ GEMVG AAQS
Sbjct: 1016 -NATLLFQILLRSKLATKRVVMEYHLNKIAFEWIIGEIEARFQQCQVNPGEMVGTLAAQS 1074
Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYL 508
IGEPATQMTLNTFHYAGVS+KNVTLGVPRL+EI+NV+K KTPSL +YL
Sbjct: 1075 IGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVAKNIKTPSLTIYL 1123
[208][TOP]
>UniRef100_A8N128 DNA-directed RNA polymerase n=1 Tax=Coprinopsis cinerea okayama7#130
RepID=A8N128_COPC7
Length = 1642
Score = 154 bits (390), Expect = 3e-36
Identities = 76/116 (65%), Positives = 97/116 (83%)
Frame = +2
Query: 164 LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 343
LS+ AQ N+TLLF++H+RA+ A++ V+ + RLTR+AF W+L EIE +F Q++A GEM G
Sbjct: 960 LSKEAQDNSTLLFRMHLRATFAARKVIEQMRLTREAFEWILGEIETKFNQSIAHPGEMCG 1019
Query: 344 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLR 511
AAQSIGEPATQMTLNTFHYAGVS+KNVTLGVPRL+EIINV+ KTPSL ++L+
Sbjct: 1020 TLAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEIINVATNIKTPSLTIHLQ 1075
[209][TOP]
>UniRef100_UPI000151A8B3 hypothetical protein PGUG_01105 n=1 Tax=Pichia guilliermondii ATCC
6260 RepID=UPI000151A8B3
Length = 1018
Score = 154 bits (389), Expect = 4e-36
Identities = 89/177 (50%), Positives = 114/177 (64%), Gaps = 5/177 (2%)
Frame = +2
Query: 20 KIVRGVELLLHRTRVLTSDEDAE-----VDAIAREMLPPDGSASGPQDEALKELSETAQL 184
+I++ + L H R SD E V + +++L G + L + +Q
Sbjct: 229 RIIQNAQQLFHGGRHKASDLRLEEIVEGVKELCKKLLVLRGDSP---------LVKESQE 279
Query: 185 NATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSI 364
NATLLFQ VR+ LA++ V+ E RL R +F W + EIE +FQ++L GEMVG AAQSI
Sbjct: 280 NATLLFQCLVRSRLATRRVIEEFRLNRMSFEWAMGEIETQFQKSLVHPGEMVGVIAAQSI 339
Query: 365 GEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
GEPATQMTLNTFHYAGVS+KNVTLGVPRL+EI+NV+K KTP+L VYL D D E
Sbjct: 340 GEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVAKNIKTPALTVYLEKDIAADIE 396
[210][TOP]
>UniRef100_B4YVV2 RNA polymerase II large subunit (Fragment) n=1 Tax=Meloidogyne
javanica RepID=B4YVV2_MELJA
Length = 219
Score = 154 bits (389), Expect = 4e-36
Identities = 80/124 (64%), Positives = 94/124 (75%)
Frame = +2
Query: 164 LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 343
+S+ AQ N T+L +R+ L S + +H+L +AF WLL EIE RF A GEMVG
Sbjct: 2 ISKQAQENTTILMNTLLRSMLCSLKMAKQHKLNEEAFEWLLGEIETRFCTATVQPGEMVG 61
Query: 344 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 523
A AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ KTPSL V+L+G A
Sbjct: 62 ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKKPKTPSLTVFLKGLAA 121
Query: 524 HDAE 535
DAE
Sbjct: 122 KDAE 125
[211][TOP]
>UniRef100_A5DCV3 DNA-directed RNA polymerase II subunit RPB1 (Fragments) n=1
Tax=Pichia guilliermondii RepID=RPB1_PICGU
Length = 1579
Score = 154 bits (389), Expect = 4e-36
Identities = 89/177 (50%), Positives = 114/177 (64%), Gaps = 5/177 (2%)
Frame = +2
Query: 20 KIVRGVELLLHRTRVLTSDEDAE-----VDAIAREMLPPDGSASGPQDEALKELSETAQL 184
+I++ + L H R SD E V + +++L G + L + +Q
Sbjct: 795 RIIQNAQQLFHGGRHKASDLRLEEIVEGVKELCKKLLVLRGDSP---------LVKESQE 845
Query: 185 NATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSI 364
NATLLFQ VR+ LA++ V+ E RL R +F W + EIE +FQ++L GEMVG AAQSI
Sbjct: 846 NATLLFQCLVRSRLATRRVIEEFRLNRMSFEWAMGEIETQFQKSLVHPGEMVGVIAAQSI 905
Query: 365 GEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
GEPATQMTLNTFHYAGVS+KNVTLGVPRL+EI+NV+K KTP+L VYL D D E
Sbjct: 906 GEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVAKNIKTPALTVYLEKDIAADIE 962
[212][TOP]
>UniRef100_A9QMH2 RNA polymerase 2 (Fragment) n=1 Tax=Brevibucca saprophaga
RepID=A9QMH2_9BILA
Length = 386
Score = 154 bits (388), Expect = 5e-36
Identities = 78/108 (72%), Positives = 89/108 (82%)
Frame = +2
Query: 212 VRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTL 391
+R++L SK V +H+L +AF WLL EIE +F QA+A GEMVGA AAQS+GEPATQMTL
Sbjct: 4 LRSTLCSKKVAEKHKLNTEAFEWLLGEIETKFNQAIAQPGEMVGALAAQSLGEPATQMTL 63
Query: 392 NTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
NTFHYAGVSAKNVTLGVPRL+EIINVSK KTPSL V+L G AV DAE
Sbjct: 64 NTFHYAGVSAKNVTLGVPRLKEIINVSKNPKTPSLTVFLTGGAVKDAE 111
[213][TOP]
>UniRef100_UPI0000F24379 DNA-directed RNA polymerase II largest subunit (RNA polymerase II
subunit 1) (B220) n=1 Tax=Pichia stipitis CBS 6054
RepID=UPI0000F24379
Length = 1739
Score = 153 bits (387), Expect = 7e-36
Identities = 85/168 (50%), Positives = 112/168 (66%), Gaps = 5/168 (2%)
Frame = +2
Query: 20 KIVRGVELLLHRTRVLTSDEDAE-----VDAIAREMLPPDGSASGPQDEALKELSETAQL 184
+I++ + + H R SD + V ++ ++L G EL + AQ
Sbjct: 963 RIIQNAQQIFHNGRYKASDLRLDEVIVGVRSLCEKLLVVRGDT---------ELVKEAQA 1013
Query: 185 NATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSI 364
NATLLFQ VR+ LAS+ V+ E +L R +F W++ EIE +FQ+++ GEMVG AAQSI
Sbjct: 1014 NATLLFQCLVRSRLASRRVIEEFKLNRSSFEWVVGEIETQFQKSIVHPGEMVGVIAAQSI 1073
Query: 365 GEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYL 508
GEPATQMTLNTFHYAGVS+KNVTLGVPRL+EI+NV+K KTP+L VYL
Sbjct: 1074 GEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVAKNIKTPALTVYL 1121
[214][TOP]
>UniRef100_C1EA31 DNA-directed RNA polymerase n=1 Tax=Micromonas sp. RCC299
RepID=C1EA31_9CHLO
Length = 1720
Score = 153 bits (387), Expect = 7e-36
Identities = 78/122 (63%), Positives = 98/122 (80%)
Frame = +2
Query: 164 LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 343
LS AQ NAT+LF VR++L++K V+SE RL+ AF W++ E+E+RF+ ALAP G+ +G
Sbjct: 1008 LSVEAQRNATILFFALVRSTLSAKRVMSEFRLSPAAFNWVIGEVESRFKVALAPPGDGIG 1067
Query: 344 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 523
AAQSIGEPATQMTLNTFH+AGVSAKNVTLGVPRL+E+IN++K+ KTPSL V LR D
Sbjct: 1068 TVAAQSIGEPATQMTLNTFHFAGVSAKNVTLGVPRLKELINIAKKIKTPSLTVALRKDLA 1127
Query: 524 HD 529
D
Sbjct: 1128 GD 1129
[215][TOP]
>UniRef100_A3GID7 DNA-directed RNA polymerase n=1 Tax=Pichia stipitis
RepID=A3GID7_PICST
Length = 1739
Score = 153 bits (387), Expect = 7e-36
Identities = 85/168 (50%), Positives = 112/168 (66%), Gaps = 5/168 (2%)
Frame = +2
Query: 20 KIVRGVELLLHRTRVLTSDEDAE-----VDAIAREMLPPDGSASGPQDEALKELSETAQL 184
+I++ + + H R SD + V ++ ++L G EL + AQ
Sbjct: 963 RIIQNAQQIFHNGRYKASDLRLDEVIVGVRSLCEKLLVVRGDT---------ELVKEAQA 1013
Query: 185 NATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSI 364
NATLLFQ VR+ LAS+ V+ E +L R +F W++ EIE +FQ+++ GEMVG AAQSI
Sbjct: 1014 NATLLFQCLVRSRLASRRVIEEFKLNRSSFEWVVGEIETQFQKSIVHPGEMVGVIAAQSI 1073
Query: 365 GEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYL 508
GEPATQMTLNTFHYAGVS+KNVTLGVPRL+EI+NV+K KTP+L VYL
Sbjct: 1074 GEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVAKNIKTPALTVYL 1121
[216][TOP]
>UniRef100_UPI00003BD271 hypothetical protein DEHA0A14036g n=1 Tax=Debaryomyces hansenii
CBS767 RepID=UPI00003BD271
Length = 1749
Score = 153 bits (386), Expect = 9e-36
Identities = 87/180 (48%), Positives = 117/180 (65%), Gaps = 8/180 (4%)
Frame = +2
Query: 20 KIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALK--------ELSET 175
+I++ + + H R SD +D + R G QD K L++
Sbjct: 968 RIIQNAQQIFHNGRHKASD--LRLDEVVR----------GVQDLCTKLLVIRGKTALTKE 1015
Query: 176 AQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAA 355
AQ NATLLFQ +R+ LA++ V+ E +L+R +F W++ EIE +FQ+++ GEMVG AA
Sbjct: 1016 AQENATLLFQCLLRSRLATRRVIEEFKLSRISFEWVMGEIETQFQKSIVHPGEMVGVIAA 1075
Query: 356 QSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
QSIGEPATQMTLNTFHYAGVS+KNVTLGVPRL+EI+NV+K KTP+L VYL ++ D E
Sbjct: 1076 QSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVAKNIKTPALTVYLEKESAADIE 1135
[217][TOP]
>UniRef100_A9QMG5 DNA-directed RNA polymerase (Fragment) n=1 Tax=Mesorhabditis
longespiculosa RepID=A9QMG5_9BILA
Length = 623
Score = 153 bits (386), Expect = 9e-36
Identities = 86/178 (48%), Positives = 111/178 (62%)
Frame = +2
Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
++LSP +++ GV L R ++ S ED +S+ AQ
Sbjct: 211 TNLSPLRVIEGVRELSKRL-IIVSGED--------------------------RISQQAQ 243
Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
NATLL + +R++L SK + +H+L ++ F WLL EIE+RFQQA+ G A QS
Sbjct: 244 YNATLLMNILLRSTLCSKQMAEKHKLNQEGFEWLLGEIEHRFQQAIVXXXXXXGXLAXQS 303
Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
+GEPATQMTLNTFH+AGVSAKNVTLGVPRL+EIINVSK KTPSL V+L G + DAE
Sbjct: 304 LGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSKSPKTPSLTVFLTGSSAKDAE 361
[218][TOP]
>UniRef100_B5RSM9 DNA-directed RNA polymerase n=1 Tax=Debaryomyces hansenii
RepID=B5RSM9_DEBHA
Length = 1749
Score = 153 bits (386), Expect = 9e-36
Identities = 87/180 (48%), Positives = 117/180 (65%), Gaps = 8/180 (4%)
Frame = +2
Query: 20 KIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALK--------ELSET 175
+I++ + + H R SD +D + R G QD K L++
Sbjct: 968 RIIQNAQQIFHNGRHKASD--LRLDEVVR----------GVQDLCTKLLVIRGKTALTKE 1015
Query: 176 AQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAA 355
AQ NATLLFQ +R+ LA++ V+ E +L+R +F W++ EIE +FQ+++ GEMVG AA
Sbjct: 1016 AQENATLLFQCLLRSRLATRRVIEEFKLSRISFEWVMGEIETQFQKSIVHPGEMVGVIAA 1075
Query: 356 QSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
QSIGEPATQMTLNTFHYAGVS+KNVTLGVPRL+EI+NV+K KTP+L VYL ++ D E
Sbjct: 1076 QSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVAKNIKTPALTVYLEKESAADIE 1135
[219][TOP]
>UniRef100_P36594 DNA-directed RNA polymerase II subunit rpb1 n=1
Tax=Schizosaccharomyces pombe RepID=RPB1_SCHPO
Length = 1752
Score = 153 bits (386), Expect = 9e-36
Identities = 85/169 (50%), Positives = 108/169 (63%)
Frame = +2
Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
+DL PS I+ G+ L+ + + D I R++ Q
Sbjct: 982 TDLLPSDIINGLNELIAKLTIFRGS-----DRITRDV----------------------Q 1014
Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
NATLLFQ+ +R+ A K V+ E+RL + AF W++ E+E RFQQA+ GEMVG AAQS
Sbjct: 1015 NNATLLFQILLRSKFAVKRVIMEYRLNKVAFEWIMGEVEARFQQAVVSPGEMVGTLAAQS 1074
Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYL 508
IGEPATQMTLNTFHYAGVS+KNVTLGVPRL+EI+NV+K KTPSL +YL
Sbjct: 1075 IGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVAKNIKTPSLTIYL 1123
[220][TOP]
>UniRef100_A9QME9 RNA polymerase 2 (Fragment) n=1 Tax=Choriorhabditis cristata
RepID=A9QME9_9BILA
Length = 378
Score = 152 bits (385), Expect = 1e-35
Identities = 76/108 (70%), Positives = 89/108 (82%)
Frame = +2
Query: 212 VRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTL 391
+R++L SK + + H+L +AF WLL E+E RFQQA+A GEMVGA AAQS+GEPATQMTL
Sbjct: 4 IRSTLCSKKMATSHKLNAEAFEWLLGEVETRFQQAIAQPGEMVGALAAQSLGEPATQMTL 63
Query: 392 NTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
NTFHYAGVSAKNVTLGVPRL+EIINVSK KTPSL +L+G A DAE
Sbjct: 64 NTFHYAGVSAKNVTLGVPRLKEIINVSKTLKTPSLTCFLQGAAAKDAE 111
[221][TOP]
>UniRef100_C4R4Y0 DNA-directed RNA polymerase n=1 Tax=Pichia pastoris GS115
RepID=C4R4Y0_PICPG
Length = 1743
Score = 152 bits (385), Expect = 1e-35
Identities = 81/125 (64%), Positives = 95/125 (76%)
Frame = +2
Query: 161 ELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMV 340
EL + AQ NAT LFQ VRA LA++ +L E RL R AF W+L IE +FQ++L GEMV
Sbjct: 1007 ELIKEAQQNATSLFQCLVRARLATRRILEEFRLNRDAFEWVLGTIEAQFQRSLVHPGEMV 1066
Query: 341 GATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDA 520
G AAQSIGEPATQMTLNTFHYAGVS+KNVTLGVPRL+EI+NV+K KTP+L VYL +
Sbjct: 1067 GVIAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVAKNIKTPALTVYLDREI 1126
Query: 521 VHDAE 535
D E
Sbjct: 1127 ALDIE 1131
[222][TOP]
>UniRef100_Q6CBQ3 DNA-directed RNA polymerase n=1 Tax=Yarrowia lipolytica
RepID=Q6CBQ3_YARLI
Length = 1750
Score = 152 bits (384), Expect = 1e-35
Identities = 86/178 (48%), Positives = 109/178 (61%)
Frame = +2
Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
SDL+ +IV GV+ L R ++ D L++ AQ
Sbjct: 983 SDLTIPEIVEGVQSLCKRLTIVRGDSS---------------------------LAKEAQ 1015
Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
NAT+LFQ VR+ +K V+ E+RL R AF W++ EIE +F +++ GEMVG AAQS
Sbjct: 1016 ENATMLFQCLVRSRFPTKRVIEEYRLNRAAFEWVMGEIETQFAKSVVHPGEMVGVIAAQS 1075
Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
IGEPATQMTLNTFHYAGVS+KNVTLGVPRL+EI+NV+K KTP+L VYL D E
Sbjct: 1076 IGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVAKNIKTPALTVYLEPSVAADIE 1133
[223][TOP]
>UniRef100_B8BQ02 DNA-directed RNA polymerase n=1 Tax=Thalassiosira pseudonana CCMP1335
RepID=B8BQ02_THAPS
Length = 1627
Score = 152 bits (383), Expect = 2e-35
Identities = 87/178 (48%), Positives = 107/178 (60%)
Frame = +2
Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
S+L P ++ +E +L R V+ D+ LS AQ
Sbjct: 998 SNLHPKDVIEKIEAMLRRLVVVVGDD---------------------------LLSVEAQ 1030
Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
NAT L+++ +R+ LASK VL E+RL+ A W+L EIE RF A GEM G AAQS
Sbjct: 1031 NNATTLYRILIRSYLASKRVLREYRLSEAALIWVLGEIEARFHHAKVSPGEMAGVLAAQS 1090
Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
IGEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINV+K KTP L +YL+ DA+
Sbjct: 1091 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVAKTVKTPGLTIYLQNHVSGDAD 1148
[224][TOP]
>UniRef100_O00820 DNA-directed RNA polymerase (Fragment) n=1 Tax=Acanthamoeba
castellanii RepID=O00820_ACACA
Length = 1569
Score = 152 bits (383), Expect = 2e-35
Identities = 87/178 (48%), Positives = 111/178 (62%)
Frame = +2
Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
SDL P +IV + L+ R V+ +D +S+ AQ
Sbjct: 909 SDLDPCQIVEDLGNLIERLVVIPGQDD---------------------------ISKEAQ 941
Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
NA LLF + +R +LAS+ VL E+RL + ++ WLL EI +RF ++L GEM+GA AAQS
Sbjct: 942 ANAILLFSILLRFTLASRRVLQEYRLDQISWDWLLGEITDRFYKSLCDPGEMIGALAAQS 1001
Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
IGEPATQMTLNTFH+AGVSAKNVTLGVPRL+E+IN++K KTPSL VYL D E
Sbjct: 1002 IGEPATQMTLNTFHFAGVSAKNVTLGVPRLKELINIAKTIKTPSLTVYLEPHCSRDHE 1059
[225][TOP]
>UniRef100_A9QMS4 DNA-directed RNA polymerase (Fragment) n=1 Tax=Poikilolaimus
oxycercus RepID=A9QMS4_9BILA
Length = 612
Score = 152 bits (383), Expect = 2e-35
Identities = 76/125 (60%), Positives = 97/125 (77%)
Frame = +2
Query: 161 ELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMV 340
++S+ AQ NATLL + +R++L SK V +HRL ++AF ++L EIENRFQ+A+
Sbjct: 233 KISQQAQYNATLLMNILIRSTLCSKQVAEKHRLNQEAFEYILGEIENRFQRAIVXXXXXX 292
Query: 341 GATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDA 520
G AQ +G+PATQMTLNTFHYAGVS+KNVTLGVPRL+EIINVSK+ KTPSL V+L+G A
Sbjct: 293 GVLXAQXLGQPATQMTLNTFHYAGVSSKNVTLGVPRLKEIINVSKQPKTPSLTVFLQGAA 352
Query: 521 VHDAE 535
DAE
Sbjct: 353 TKDAE 357
[226][TOP]
>UniRef100_B9WN64 DNA-directed RNA polymerase n=1 Tax=Candida dubliniensis CD36
RepID=B9WN64_CANDC
Length = 1735
Score = 152 bits (383), Expect = 2e-35
Identities = 85/177 (48%), Positives = 114/177 (64%), Gaps = 5/177 (2%)
Frame = +2
Query: 20 KIVRGVELLLHRTRVLTSDEDAE-----VDAIAREMLPPDGSASGPQDEALKELSETAQL 184
+I++ + + H R SD E V + +++L G L + AQ
Sbjct: 963 RIIQNAQQIFHNGRYRASDLRLEEIIFGVRELCKKLLVVRGDTP---------LVKEAQE 1013
Query: 185 NATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSI 364
NATLLFQ +R+ LA++ V+ E +L R +F W+L EIE +FQ+++ GEMVG AAQSI
Sbjct: 1014 NATLLFQCLLRSRLAARRVIEEFKLNRVSFEWVLGEIETQFQKSIVHPGEMVGVVAAQSI 1073
Query: 365 GEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
GEPATQMTLNTFHYAGVS+KNVTLGVPRL+EI+NV+K KTP++ VYL + D E
Sbjct: 1074 GEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVAKNIKTPAMTVYLDPEVASDIE 1130
[227][TOP]
>UniRef100_A5E6J4 DNA-directed RNA polymerase n=1 Tax=Lodderomyces elongisporus
RepID=A5E6J4_LODEL
Length = 1745
Score = 152 bits (383), Expect = 2e-35
Identities = 78/124 (62%), Positives = 95/124 (76%)
Frame = +2
Query: 164 LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 343
L + AQ NATLLFQ VR+ LAS+ V+ E +L + +F W L EIE +FQ+++ GEMVG
Sbjct: 1001 LMKEAQENATLLFQCLVRSRLASRRVIEEFKLNKASFEWALGEIETQFQKSVVHPGEMVG 1060
Query: 344 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 523
AAQSIGEPATQMTLNTFHYAGVS+KNVTLGVPRL+EI+NV+K KTP+L VYL +
Sbjct: 1061 VVAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVAKNIKTPALTVYLDPEVA 1120
Query: 524 HDAE 535
D E
Sbjct: 1121 SDIE 1124
[228][TOP]
>UniRef100_C1MI48 DNA-directed RNA polymerase n=1 Tax=Micromonas pusilla CCMP1545
RepID=C1MI48_9CHLO
Length = 1694
Score = 151 bits (381), Expect = 3e-35
Identities = 76/123 (61%), Positives = 98/123 (79%)
Frame = +2
Query: 161 ELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMV 340
ELS AQ N+T+LF VR++L++K V+ + +L+ AF W++ E+E+RF+ ALAP G+ +
Sbjct: 1009 ELSLEAQRNSTILFFALVRSTLSAKRVMKDFKLSPAAFNWVVGEVESRFKMALAPPGDGI 1068
Query: 341 GATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDA 520
G AAQSIGEPATQMTLNTFH+AGVSAKNVTLGVPRL+EIIN++K+ KTPSL V LR D
Sbjct: 1069 GTVAAQSIGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINIAKKIKTPSLTVALRKDL 1128
Query: 521 VHD 529
D
Sbjct: 1129 AGD 1131
[229][TOP]
>UniRef100_Q9C428 DNA-directed RNA polymerase (Fragment) n=1 Tax=Monoblepharis
macrandra RepID=Q9C428_9FUNG
Length = 1603
Score = 151 bits (381), Expect = 3e-35
Identities = 89/172 (51%), Positives = 108/172 (62%)
Frame = +2
Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
S+L P +IVR V LL R V+T ++ LS AQ
Sbjct: 925 SNLRPEEIVRDVNDLLSRCIVITGEDG---------------------------LSTMAQ 957
Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
NATLLF + VR LA+K V +EHRL R AF WL+ EIE+RF+ A EMVG AAQS
Sbjct: 958 HNATLLFNILVRHLLATKRVYAEHRLNRNAFRWLIGEIESRFKAAKVNPAEMVGTIAAQS 1017
Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGD 517
IGEPATQMTLNTFH+AGV +KNVTLGVPRL+EIINV+ +TPSL+V L+ +
Sbjct: 1018 IGEPATQMTLNTFHFAGVGSKNVTLGVPRLKEIINVATNLRTPSLLVCLKAN 1069
[230][TOP]
>UniRef100_C4Y5N4 DNA-directed RNA polymerase n=1 Tax=Clavispora lusitaniae ATCC 42720
RepID=C4Y5N4_CLAL4
Length = 1402
Score = 150 bits (378), Expect = 7e-35
Identities = 84/177 (47%), Positives = 116/177 (65%), Gaps = 5/177 (2%)
Frame = +2
Query: 20 KIVRGVELLLHRTRVLTSDEDAE-----VDAIAREMLPPDGSASGPQDEALKELSETAQL 184
+I++ + + H R SD + V A+ ++L G + L++ AQ
Sbjct: 922 RIIQNAQQIFHSGRQRASDLKLDEIVEGVKALCSKLLVIRGKS---------RLAKEAQE 972
Query: 185 NATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSI 364
+ATLLFQ VR+ LA++ ++ E +L+R +F W+ EIE +FQ+++ GEMVG AAQSI
Sbjct: 973 DATLLFQCLVRSRLAARRIIEEFKLSRISFEWVCGEIETQFQKSIVHPGEMVGVIAAQSI 1032
Query: 365 GEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
GEPATQMTLNTFHYAGVS+KNVTLGVPRL+EI+NV+K KTP+L VYL + D E
Sbjct: 1033 GEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVAKNIKTPALTVYLDPEIASDIE 1089
[231][TOP]
>UniRef100_C5LSN9 DNA-directed RNA polymerase n=1 Tax=Perkinsus marinus ATCC 50983
RepID=C5LSN9_9ALVE
Length = 1667
Score = 149 bits (376), Expect = 1e-34
Identities = 85/172 (49%), Positives = 106/172 (61%)
Frame = +2
Query: 14 PSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNAT 193
P ++V+ VE L R RV+ D +V L AQ NAT
Sbjct: 1019 PQEVVQKVEETLDRLRVIRGLTDDQV------------------------LGWEAQHNAT 1054
Query: 194 LLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEP 373
++ Q H+R LAS+ +L RL ++A WLL E+E RF+++L AGE VG AAQSIGEP
Sbjct: 1055 VVLQAHLRYHLASRKLLERDRLGQRAVDWLLGEVEQRFEKSLVAAGESVGTIAAQSIGEP 1114
Query: 374 ATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHD 529
ATQMTLNTFH+AGV +KNVTLGVPRL+EIINV+K KTPS+ VYL D D
Sbjct: 1115 ATQMTLNTFHFAGVGSKNVTLGVPRLKEIINVAKNLKTPSMTVYLHPDYASD 1166
[232][TOP]
>UniRef100_Q5ACI7 DNA-directed RNA polymerase n=1 Tax=Candida albicans
RepID=Q5ACI7_CANAL
Length = 1728
Score = 149 bits (376), Expect = 1e-34
Identities = 83/177 (46%), Positives = 113/177 (63%), Gaps = 5/177 (2%)
Frame = +2
Query: 20 KIVRGVELLLHRTRVLTSDEDAE-----VDAIAREMLPPDGSASGPQDEALKELSETAQL 184
+I++ + + H R SD E V + ++L G L + AQ
Sbjct: 963 RIIQNAQQIFHNGRYRASDLRLEEIVLGVKELCMKLLVVRGDTP---------LVKEAQE 1013
Query: 185 NATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSI 364
NATLLFQ +R+ LA++ V+ E +L R +F W++ EIE +FQ+++ GEMVG AAQSI
Sbjct: 1014 NATLLFQCLLRSRLAARRVIEEFKLNRASFEWVMGEIETQFQKSIVHPGEMVGVVAAQSI 1073
Query: 365 GEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
GEPATQMTLNTFHYAGVS+KNVTLGVPRL+EI+NV+K KTP++ V+L + D E
Sbjct: 1074 GEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVAKNIKTPAMTVFLDPEVASDIE 1130
[233][TOP]
>UniRef100_C4YN85 DNA-directed RNA polymerase n=1 Tax=Candida albicans
RepID=C4YN85_CANAL
Length = 1742
Score = 149 bits (376), Expect = 1e-34
Identities = 83/177 (46%), Positives = 113/177 (63%), Gaps = 5/177 (2%)
Frame = +2
Query: 20 KIVRGVELLLHRTRVLTSDEDAE-----VDAIAREMLPPDGSASGPQDEALKELSETAQL 184
+I++ + + H R SD E V + ++L G L + AQ
Sbjct: 963 RIIQNAQQIFHNGRYRASDLRLEEIVLGVKELCMKLLVVRGDTP---------LVKEAQE 1013
Query: 185 NATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSI 364
NATLLFQ +R+ LA++ V+ E +L R +F W++ EIE +FQ+++ GEMVG AAQSI
Sbjct: 1014 NATLLFQCLLRSRLAARRVIEEFKLNRASFEWVMGEIETQFQKSIVHPGEMVGVVAAQSI 1073
Query: 365 GEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
GEPATQMTLNTFHYAGVS+KNVTLGVPRL+EI+NV+K KTP++ V+L + D E
Sbjct: 1074 GEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVAKNIKTPAMTVFLDPEVASDIE 1130
[234][TOP]
>UniRef100_Q5CUJ2 DNA-directed RNA polymerase (Fragment) n=1 Tax=Cryptosporidium parvum
Iowa II RepID=Q5CUJ2_CRYPV
Length = 1902
Score = 148 bits (374), Expect = 2e-34
Identities = 74/119 (62%), Positives = 92/119 (77%)
Frame = +2
Query: 179 QLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQ 358
Q NAT L +H+R+SLASK +L RL AF W+L EIE++F ++LA +GEMVG AAQ
Sbjct: 1066 QKNATTLLGIHIRSSLASKKILEVDRLGPTAFEWILGEIEHQFYRSLAHSGEMVGTIAAQ 1125
Query: 359 SIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
SIGEPATQMTLNTFH+AGV +KNVTLGVPRL+E+INV+K +TP+L VYL +D E
Sbjct: 1126 SIGEPATQMTLNTFHFAGVGSKNVTLGVPRLRELINVAKNVRTPTLTVYLESGIANDQE 1184
[235][TOP]
>UniRef100_Q5CH45 DNA-directed RNA polymerase n=1 Tax=Cryptosporidium hominis
RepID=Q5CH45_CRYHO
Length = 1895
Score = 148 bits (374), Expect = 2e-34
Identities = 74/119 (62%), Positives = 92/119 (77%)
Frame = +2
Query: 179 QLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQ 358
Q NAT L +H+R+SLASK +L RL AF W+L EIE++F ++LA +GEMVG AAQ
Sbjct: 1059 QKNATTLLGIHIRSSLASKKILEVDRLGPTAFEWILGEIEHQFYRSLAHSGEMVGTIAAQ 1118
Query: 359 SIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
SIGEPATQMTLNTFH+AGV +KNVTLGVPRL+E+INV+K +TP+L VYL +D E
Sbjct: 1119 SIGEPATQMTLNTFHFAGVGSKNVTLGVPRLRELINVAKNVRTPTLTVYLESGIANDQE 1177
[236][TOP]
>UniRef100_A9UED6 RNA polymerase 2 largest subunit (Fragment) n=1 Tax=Diploscapter
sp. JU359 RepID=A9UED6_9BILA
Length = 374
Score = 148 bits (373), Expect = 3e-34
Identities = 75/108 (69%), Positives = 89/108 (82%)
Frame = +2
Query: 212 VRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTL 391
+R++L SK + ++L +AF WLL E+E RF QA+A GEMVGA AAQS+GEPATQMTL
Sbjct: 5 LRSTLCSKKMGMAYKLDSEAFEWLLGEVEQRFNQAIAQPGEMVGALAAQSLGEPATQMTL 64
Query: 392 NTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
NTFHYAGVSAKNVTLGVPRL+EIINVSK+ KTPSL V+L+G A DAE
Sbjct: 65 NTFHYAGVSAKNVTLGVPRLKEIINVSKKLKTPSLTVFLQGAAAKDAE 112
[237][TOP]
>UniRef100_A9QMF7 RNA polymerase 2 (Fragment) n=1 Tax=Pelodera pseudoteres
RepID=A9QMF7_9PELO
Length = 366
Score = 148 bits (373), Expect = 3e-34
Identities = 74/106 (69%), Positives = 87/106 (82%)
Frame = +2
Query: 218 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 397
++L SK + +H+L AF WLL EIE+RFQQA+ GEMVGA AAQS+GEPATQMTLNT
Sbjct: 1 STLCSKQMADKHKLNESAFDWLLGEIEHRFQQAIVQPGEMVGALAAQSLGEPATQMTLNT 60
Query: 398 FHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
FH+AGVSAKNVTLGVPRL+EIINVSK +TPSL V+L+G A DAE
Sbjct: 61 FHFAGVSAKNVTLGVPRLKEIINVSKSPRTPSLTVFLQGAAAKDAE 106
[238][TOP]
>UniRef100_Q9HGZ5 DNA-directed RNA polymerase n=2 Tax=Aspergillus RepID=Q9HGZ5_ASPOR
Length = 1748
Score = 148 bits (373), Expect = 3e-34
Identities = 82/178 (46%), Positives = 112/178 (62%)
Frame = +2
Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
SDL P++++ V+ LL R ++ D+ +S+ AQ
Sbjct: 999 SDLHPAEVIPQVQALLDRLLIVRGDDP---------------------------ISQEAQ 1031
Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
NATLLF+ +R+ LA + +++E+ + + AF ++ IE+RF +A APAGEMVG AAQS
Sbjct: 1032 ENATLLFKAQLRSRLAFRRLVTEYSMNKLAFQHVIGAIESRFAKANAPAGEMVGVLAAQS 1091
Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
IGEPATQMTLNTFH+AGVS+KNVTLGVPRL+EI+NV+ KTPS+ VY HD E
Sbjct: 1092 IGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNVATNIKTPSMTVYQEPGRTHDKE 1149
[239][TOP]
>UniRef100_B2AA31 DNA-directed RNA polymerase n=1 Tax=Podospora anserina
RepID=B2AA31_PODAN
Length = 1748
Score = 147 bits (371), Expect = 5e-34
Identities = 82/169 (48%), Positives = 108/169 (63%)
Frame = +2
Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
SDL+P ++ V+ LL R V+ ++ ELS A
Sbjct: 995 SDLTPKDVIPAVQALLARMVVVRGED---------------------------ELSREAD 1027
Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
NAT+LF++ +R+ LA K + E RL + AF +L E+ENR+ +++ GEMVG AAQS
Sbjct: 1028 YNATILFKIQIRSRLAFKRLAVEQRLNKLAFDHVLGELENRWSRSMVSPGEMVGVLAAQS 1087
Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYL 508
IGEPATQMTLNTFH+AGVS+KNVTLGVPRL+EI+NV+K KTPS+VVYL
Sbjct: 1088 IGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNVAKDIKTPSMVVYL 1136
[240][TOP]
>UniRef100_B3RM26 DNA-directed RNA polymerase n=1 Tax=Trichoplax adhaerens
RepID=B3RM26_TRIAD
Length = 1784
Score = 146 bits (369), Expect = 8e-34
Identities = 79/124 (63%), Positives = 93/124 (75%)
Frame = +2
Query: 164 LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 343
+S+ AQ NATLLF + +R+ L+SK V E+ LT +AF WL+ E++ GEMVG
Sbjct: 1017 ISKQAQENATLLFNILLRSVLSSKRVTEEYHLTSEAFDWLIGEVQ---------PGEMVG 1067
Query: 344 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 523
AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ KTPSL V L G A
Sbjct: 1068 PLAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKKPKTPSLTVILTGPAA 1127
Query: 524 HDAE 535
DAE
Sbjct: 1128 RDAE 1131
[241][TOP]
>UniRef100_B7G9I2 DNA-directed RNA polymerase (Fragment) n=1 Tax=Phaeodactylum
tricornutum CCAP 1055/1 RepID=B7G9I2_PHATR
Length = 1706
Score = 146 bits (368), Expect = 1e-33
Identities = 82/176 (46%), Positives = 108/176 (61%)
Frame = +2
Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
+DL P+++++ V LL R V+ ++ V+A Q
Sbjct: 936 TDLHPTEVIQIVNNLLERLIVVVGNDPLSVEA---------------------------Q 968
Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
NAT L+++ +R L+SK VL + RL++ A W++ EIE RF A+ GEM G AAQS
Sbjct: 969 SNATTLYRILIRTMLSSKRVLKDWRLSKAALNWVVGEIETRFNIAMVNPGEMAGVLAAQS 1028
Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHD 529
IGEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINV+K KTP L +YL+ + D
Sbjct: 1029 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVAKTPKTPGLTIYLQEEVSGD 1084
[242][TOP]
>UniRef100_B6AG69 DNA-directed RNA polymerase n=1 Tax=Cryptosporidium muris RN66
RepID=B6AG69_9CRYT
Length = 1927
Score = 145 bits (367), Expect = 1e-33
Identities = 83/174 (47%), Positives = 113/174 (64%)
Frame = +2
Query: 14 PSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNAT 193
P I++ VE LL + +L + D + LPP D + E+ Q NAT
Sbjct: 1020 PVTIIKQVEGLLDK--LLLWKNMSTKDNLDNPKLPPTF------DNIIAEV----QKNAT 1067
Query: 194 LLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEP 373
L +H+R++LASK +L RL AF W++ EI+++F ++LA +GEMVG AAQSIGEP
Sbjct: 1068 TLLGIHIRSALASKKILEIDRLGPTAFEWVIGEIQHQFYRSLAHSGEMVGTIAAQSIGEP 1127
Query: 374 ATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
ATQMTLNTFH+AGV +KNVTLGVPRL+E+INV+K +TP+L +YL +D E
Sbjct: 1128 ATQMTLNTFHFAGVGSKNVTLGVPRLRELINVAKNVRTPTLTIYLENSIANDQE 1181
[243][TOP]
>UniRef100_UPI000187E3DF hypothetical protein MPER_04443 n=1 Tax=Moniliophthora perniciosa
FA553 RepID=UPI000187E3DF
Length = 343
Score = 145 bits (365), Expect = 2e-33
Identities = 83/165 (50%), Positives = 104/165 (63%)
Frame = +2
Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
SDL P+ IV V+ L R V+ ++D LS AQ
Sbjct: 187 SDLEPAYIVDAVKALCERLIVVRGNDD---------------------------LSREAQ 219
Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
NATL F++H+RA+ AS+ VL + L R+AF W+L E+E++F Q+L GEM G AAQS
Sbjct: 220 DNATLRFRMHLRATFASRRVLEKFHLNREAFEWVLGEVESKFNQSLVNPGEMCGTLAAQS 279
Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSL 496
IGEPATQMTLNTFHYAGVS+KNVTLGVPRL+EII V+ KTPS+
Sbjct: 280 IGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEIIYVATHIKTPSV 324
[244][TOP]
>UniRef100_B6H9U6 DNA-directed RNA polymerase n=1 Tax=Penicillium chrysogenum Wisconsin
54-1255 RepID=B6H9U6_PENCW
Length = 1733
Score = 145 bits (365), Expect = 2e-33
Identities = 81/178 (45%), Positives = 112/178 (62%)
Frame = +2
Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
SDL P++++ V+ LL R ++ ++ +S+ AQ
Sbjct: 995 SDLHPAEVIPQVQQLLDRLVIVRGNDP---------------------------ISQEAQ 1027
Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
+NATLLF+ +R+ LA + +++++ L + AF +L IE+RF +A A GEMVG AAQS
Sbjct: 1028 VNATLLFKAQLRSRLAFRRLVTDYSLNKLAFQHVLGAIESRFARAAANPGEMVGVLAAQS 1087
Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
IGEPATQMTLNTFH+AGVS+KNVTLGVPRL+EI+NV+ KTPS+ VY G HD E
Sbjct: 1088 IGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNVATNIKTPSMTVYQEGVKTHDKE 1145
[245][TOP]
>UniRef100_C9SR21 DNA-directed RNA polymerase II subunit RPB1 n=1 Tax=Verticillium
albo-atrum VaMs.102 RepID=C9SR21_9PEZI
Length = 1756
Score = 144 bits (363), Expect = 4e-33
Identities = 85/178 (47%), Positives = 111/178 (62%), Gaps = 1/178 (0%)
Frame = +2
Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
SDL+P ++ V +L R V+ PDG LS+ A
Sbjct: 994 SDLTPQDVIPAVSSMLDRMTVVRG---------------PDG------------LSKEAD 1026
Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
NAT+LF+ H+R+ LA K V RL + AF+ +L E+E R+ +A GEMVG AAQS
Sbjct: 1027 YNATILFKAHIRSRLAFKGVACLQRLNKLAFSHVLGELEGRWAKASISPGEMVGVLAAQS 1086
Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYL-RGDAVHDA 532
IGEPATQMTLNTFH+AGVS+KNVTLGVPRL+EI+N+++ KTPS+VVYL G+A +A
Sbjct: 1087 IGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNLAQNIKTPSMVVYLSEGNATQEA 1144
[246][TOP]
>UniRef100_A9BLB7 DNA-directed RNA polymerase n=1 Tax=Cryptophyta RepID=A9BLB7_9CRYP
Length = 1464
Score = 144 bits (362), Expect = 5e-33
Identities = 68/112 (60%), Positives = 93/112 (83%)
Frame = +2
Query: 176 AQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAA 355
++LNATLLF++ +R+ LASK++ +++ ++ AF W+L EI ++++++A GEMVG +A
Sbjct: 1011 SRLNATLLFRIFLRSKLASKIIFFKYKFSKVAFLWVLNEICTQYRKSIASPGEMVGTISA 1070
Query: 356 QSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLR 511
QSIG+PATQMTLNTFHYAGVSAKNVTLGVPRL+EIINV + KTPSL +Y R
Sbjct: 1071 QSIGQPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVLQTVKTPSLTIYFR 1122
[247][TOP]
>UniRef100_A1CNZ4 DNA-directed RNA polymerase n=1 Tax=Aspergillus clavatus
RepID=A1CNZ4_ASPCL
Length = 1765
Score = 144 bits (362), Expect = 5e-33
Identities = 83/178 (46%), Positives = 109/178 (61%)
Frame = +2
Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
SDL P+++V V+ LL R V+ D+ +S AQ
Sbjct: 1001 SDLHPAEVVPQVQSLLDRLLVVRGDDP---------------------------ISHEAQ 1033
Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
NATLLF+ +R+ LA + +++E+ + + AF +L IE+RF +A A GEMVG AAQS
Sbjct: 1034 ENATLLFKAQLRSRLAFRRLVTEYSMNKLAFQHVLGAIESRFAKAAASPGEMVGVLAAQS 1093
Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
IGEPATQMTLNTFH+AGVS+KNVTLGVPRL+EI+NV+ KTPS+ VY HD E
Sbjct: 1094 IGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNVATNIKTPSMTVYQMPSKCHDKE 1151
[248][TOP]
>UniRef100_Q9BMP2 DNA-directed RNA polymerase (Fragment) n=1 Tax=Stylonychia mytilus
RepID=Q9BMP2_STYMT
Length = 1678
Score = 143 bits (361), Expect = 7e-33
Identities = 69/112 (61%), Positives = 92/112 (82%)
Frame = +2
Query: 176 AQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAA 355
A ++T LF++++R+ L SK V+ + RL++ AF W+L EI++RF QAL GEMVG+ A
Sbjct: 926 ANSDSTWLFKIYLRSLLNSKAVIQQERLSKDAFNWILGEIKSRFDQALVNPGEMVGSIGA 985
Query: 356 QSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLR 511
QS+GEPATQMTLNTFH+AGVSAKNVTLGVPRL+EIINV+K KTPS+ ++L+
Sbjct: 986 QSMGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVAKNIKTPSMKIFLK 1037
[249][TOP]
>UniRef100_A1YIA7 DNA-directed RNA polymerase (Fragment) n=1 Tax=Pichia kudriavzevii
RepID=A1YIA7_ISSOR
Length = 1647
Score = 143 bits (361), Expect = 7e-33
Identities = 82/172 (47%), Positives = 108/172 (62%)
Frame = +2
Query: 20 KIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLL 199
+IV+ + + H R SD E + + L + L E E N+TLL
Sbjct: 886 RIVQNAQQIFHVDRYKASDLTIEEIVKSVQELCKKFTVVRGDGGCLTEARE----NSTLL 941
Query: 200 FQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPAT 379
FQ +R+ LA++ VL E++L + AF W++ I +F ++L GEMVG AAQSIGEPAT
Sbjct: 942 FQCLIRSKLATRRVLEEYKLNKDAFEWVVGTIAQQFARSLVNPGEMVGVVAAQSIGEPAT 1001
Query: 380 QMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
QMTLNTFHYAGVS+KNVTLGVPRL+EI+NV+K KTP+L VYL + D E
Sbjct: 1002 QMTLNTFHYAGVSSKNVTLGVPRLKEILNVAKNFKTPALTVYLEEEYATDIE 1053
[250][TOP]
>UniRef100_A8IRZ2 DNA-directed RNA polymerase n=1 Tax=Chlamydomonas reinhardtii
RepID=A8IRZ2_CHLRE
Length = 1789
Score = 143 bits (360), Expect = 9e-33
Identities = 75/115 (65%), Positives = 88/115 (76%)
Frame = +2
Query: 164 LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 343
LS AQ NAT++F VR LASK V+SE++L KA WLL E+E RF A A AGE VG
Sbjct: 1022 LSVEAQRNATIMFHSLVRMHLASKRVMSEYKLNNKALDWLLGELETRFFLAQAHAGECVG 1081
Query: 344 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYL 508
AAQS+GEP TQMTLNTFH+AGVSAKNVTLGVPRL E+IN++K KTP+L V+L
Sbjct: 1082 TVAAQSLGEPTTQMTLNTFHFAGVSAKNVTLGVPRLTELINLAKNIKTPTLTVHL 1136