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[1][TOP]
>UniRef100_O04142 DNA-directed RNA polymerase (Fragment) n=1 Tax=Porphyra yezoensis
RepID=O04142_PORYE
Length = 1685
Score = 358 bits (918), Expect = 2e-97
Identities = 183/184 (99%), Positives = 183/184 (99%)
Frame = +3
Query: 3 NRIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEM 182
NRIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEM
Sbjct: 1171 NRIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEM 1230
Query: 183 EDEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQDNKIVIDSVTGSFTKENEWLLET 362
EDEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVF RQDNKIVIDSVTGSFTKENEWLLET
Sbjct: 1231 EDEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFTRQDNKIVIDSVTGSFTKENEWLLET 1290
Query: 363 DGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNYRHL 542
DGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNYRHL
Sbjct: 1291 DGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNYRHL 1350
Query: 543 SVLV 554
SVLV
Sbjct: 1351 SVLV 1354
[2][TOP]
>UniRef100_Q9AXN0 DNA-directed RNA polymerase n=1 Tax=Glaucosphaera vacuolata
RepID=Q9AXN0_9RHOD
Length = 1746
Score = 194 bits (494), Expect = 3e-48
Identities = 102/183 (55%), Positives = 129/183 (70%)
Frame = +3
Query: 3 NRIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEM 182
N+IH GGD++VMASEDN A LV+R+R+A + E + E E+ A
Sbjct: 1230 NKIHHDLGGDVNVMASEDNDANLVLRIRIAAQKEPEK--------MAEGEEHA------- 1274
Query: 183 EDEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQDNKIVIDSVTGSFTKENEWLLET 362
++EE+ E LFLRKVE LLS + L G+P I KV+MR+ ++IV D TG + E EW+L+T
Sbjct: 1275 QEEEEDECLFLRKVEGSLLSEMNLGGVPDIKKVYMREADRIVPDPRTGGLSVEKEWVLDT 1334
Query: 363 DGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNYRHL 542
DG N +AVM H+DVD+TRTVSND+VE F LGIE VRA LLNEIR VISFDGAYVNYRHL
Sbjct: 1335 DGTNLLAVMSHKDVDYTRTVSNDVVEMFVTLGIEGVRAALLNEIRGVISFDGAYVNYRHL 1394
Query: 543 SVL 551
++L
Sbjct: 1395 AIL 1397
[3][TOP]
>UniRef100_O09451 DNA-directed RNA polymerase (Fragment) n=1 Tax=Bonnemaisonia hamifera
RepID=O09451_9FLOR
Length = 1732
Score = 192 bits (489), Expect = 1e-47
Identities = 104/185 (56%), Positives = 131/185 (70%), Gaps = 1/185 (0%)
Frame = +3
Query: 3 NRIHAHFGGDLHVMASEDNAAELVIRVRVAMEN-EDKAGISDSTKPRFEDEQDADRVAAE 179
N I +FG D+HV+ S+DN ++V+R+RVA E+ ++K G +E AD E
Sbjct: 1157 NMITQNFGNDVHVIRSQDNDEKMVMRLRVADESAQEKCG----------EEGGAD---IE 1203
Query: 180 MEDEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQDNKIVIDSVTGSFTKENEWLLE 359
+D+ED++D FLR++ES+LLS + L GIP I KVFMRQ +D TG+ EW+L+
Sbjct: 1204 EDDDEDSDDTFLRRLESELLSQMNLGGIPAIRKVFMRQSRFTFVDPGTGTHKSREEWVLD 1263
Query: 360 TDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNYRH 539
TDGVN +AVM HE VD TRT SNDIVE FEVLGIEAVR LLNEIR VISFDGAYVNYRH
Sbjct: 1264 TDGVNLLAVMSHEAVDHTRTTSNDIVEIFEVLGIEAVREVLLNEIRGVISFDGAYVNYRH 1323
Query: 540 LSVLV 554
L++LV
Sbjct: 1324 LAILV 1328
[4][TOP]
>UniRef100_Q9AXN1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Botryocladia
uvarioides RepID=Q9AXN1_9FLOR
Length = 1712
Score = 179 bits (453), Expect = 2e-43
Identities = 98/184 (53%), Positives = 125/184 (67%)
Frame = +3
Query: 3 NRIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEM 182
N + +FG D+H++ S DN LVIR+RV +++ A I + R E+ D + +
Sbjct: 1154 NMMQQNFGDDIHIVRSTDNDERLVIRLRV---HDEGANIKYAEDGRREEGIDTG-MDIDD 1209
Query: 183 EDEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQDNKIVIDSVTGSFTKENEWLLET 362
ED++D +D FLR +ES+LL+ + L GI I KVFMRQ + ID G + + EW+L+T
Sbjct: 1210 EDDDDTDDAFLRTLESELLNKMPLGGIKDIHKVFMRQAKRQYIDKEYGKYKTDEEWVLDT 1269
Query: 363 DGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNYRHL 542
DGVN AVM HE VD TRT+SNDIVE FE LGIEAVR LL EIR VISFDGAYVNYRHL
Sbjct: 1270 DGVNLKAVMCHEAVDHTRTMSNDIVEIFETLGIEAVREALLQEIRGVISFDGAYVNYRHL 1329
Query: 543 SVLV 554
S+LV
Sbjct: 1330 SILV 1333
[5][TOP]
>UniRef100_O00820 DNA-directed RNA polymerase (Fragment) n=1 Tax=Acanthamoeba
castellanii RepID=O00820_ACACA
Length = 1569
Score = 174 bits (440), Expect = 5e-42
Identities = 91/183 (49%), Positives = 125/183 (68%), Gaps = 1/183 (0%)
Frame = +3
Query: 6 RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
RIHA FGGDL+ + ++DNA +L++R+R+ + E+KA + E
Sbjct: 1143 RIHADFGGDLNCIYNDDNADKLILRIRINNDEENKA--------------------PDQE 1182
Query: 186 DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQD-NKIVIDSVTGSFTKENEWLLET 362
+D+FL+++ES +L+ + L GI GI KVF+R+D NK+ ID+ G +TK NE +L+T
Sbjct: 1183 GSVGDDDVFLKQIESNMLTEMDLKGIEGIKKVFIREDKNKVAIDA-RGEYTKANELVLDT 1241
Query: 363 DGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNYRHL 542
+G N +AVM H DVD TRT SN+I+ET EVLGIEAVR LL E+R VISFDGAYVNYRHL
Sbjct: 1242 EGTNLLAVMSHPDVDHTRTTSNNIIETIEVLGIEAVRNALLRELRNVISFDGAYVNYRHL 1301
Query: 543 SVL 551
++L
Sbjct: 1302 AIL 1304
[6][TOP]
>UniRef100_C1EA31 DNA-directed RNA polymerase n=1 Tax=Micromonas sp. RCC299
RepID=C1EA31_9CHLO
Length = 1720
Score = 168 bits (425), Expect = 3e-40
Identities = 87/183 (47%), Positives = 124/183 (67%)
Frame = +3
Query: 6 RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
RI+ F DL + ++DN+ +L++R+R+ D + D+ A
Sbjct: 1215 RINQDFQEDLSCIFNDDNSEKLILRIRLL------------------DNEMGDKEAGPST 1256
Query: 186 DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQDNKIVIDSVTGSFTKENEWLLETD 365
E++ +FL+K+ESQ+L+NL L GIP I KVF+R+ N + +D VT +FTK++EW+L+T+
Sbjct: 1257 TEDE---VFLKKLESQMLTNLALRGIPDIKKVFIREANVMGLDPVTETFTKKSEWMLDTE 1313
Query: 366 GVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNYRHLS 545
GVN + VM HEDVDFTRT SN ++E +VLGIEAVR TLL E+R VI FDG+YVNYRHL+
Sbjct: 1314 GVNLLEVMNHEDVDFTRTTSNHLIEVIQVLGIEAVRNTLLKELRGVIEFDGSYVNYRHLA 1373
Query: 546 VLV 554
+LV
Sbjct: 1374 ILV 1376
[7][TOP]
>UniRef100_Q010D7 DNA-directed RNA polymerase n=1 Tax=Ostreococcus tauri
RepID=Q010D7_OSTTA
Length = 1673
Score = 161 bits (408), Expect = 3e-38
Identities = 81/183 (44%), Positives = 116/183 (63%)
Frame = +3
Query: 6 RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
RI+ FGGDL + ++DN+ +LV+R+R+ +K +
Sbjct: 1229 RINEDFGGDLSCIFNDDNSEKLVLRIRIMKAEGEK-----------------------YD 1265
Query: 186 DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQDNKIVIDSVTGSFTKENEWLLETD 365
D +++FL+++E+Q+LSNL L GIP I KVF+R+ ++ T F K EW+L+T+
Sbjct: 1266 DSSIEDEVFLKRIETQMLSNLALRGIPDIKKVFIREAKSNAVNPRTQLFEKHTEWMLDTE 1325
Query: 366 GVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNYRHLS 545
GVN + VM H DVDFTRT SN ++E ++LGIEAVR TLL E+R VI FDG+YVNYRHL+
Sbjct: 1326 GVNLLEVMAHPDVDFTRTTSNHLIEVIQILGIEAVRNTLLRELRGVIEFDGSYVNYRHLA 1385
Query: 546 VLV 554
+LV
Sbjct: 1386 ILV 1388
[8][TOP]
>UniRef100_C1MI48 DNA-directed RNA polymerase n=1 Tax=Micromonas pusilla CCMP1545
RepID=C1MI48_9CHLO
Length = 1694
Score = 161 bits (408), Expect = 3e-38
Identities = 82/183 (44%), Positives = 123/183 (67%)
Frame = +3
Query: 6 RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
RI+ F DL + ++DN+ +L++R+R+ E + ++ A++ E
Sbjct: 1217 RINEDFQDDLSCIFNDDNSEKLIVRIRI-----------------MNSELEKEQGASQTE 1259
Query: 186 DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQDNKIVIDSVTGSFTKENEWLLETD 365
DE +FL+++E+QLL++L L GIP I KVF+R+ N + +D T ++ K++EW+L+T+
Sbjct: 1260 DE-----VFLKRLEAQLLNSLALRGIPDIKKVFIREANTMGLDPETETYAKKSEWMLDTE 1314
Query: 366 GVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNYRHLS 545
GVN + VM HEDVDFTRT SN ++E +VLGIEAVR LL E+R VI FDG+YVNYRHL+
Sbjct: 1315 GVNLLEVMNHEDVDFTRTTSNHLIEVIQVLGIEAVRNALLKELRGVIEFDGSYVNYRHLA 1374
Query: 546 VLV 554
+LV
Sbjct: 1375 ILV 1377
[9][TOP]
>UniRef100_A4S3M0 DNA-directed RNA polymerase n=1 Tax=Ostreococcus lucimarinus CCE9901
RepID=A4S3M0_OSTLU
Length = 1646
Score = 161 bits (408), Expect = 3e-38
Identities = 88/183 (48%), Positives = 122/183 (66%)
Frame = +3
Query: 6 RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
RI+ F GDL + ++DN+ +LV+R+R+ + G+ ++ED A E
Sbjct: 1209 RINEDFAGDLSCIFNDDNSEKLVLRIRIM----NPEGV------KYED--------ASTE 1250
Query: 186 DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQDNKIVIDSVTGSFTKENEWLLETD 365
DE +FL+++E+Q+LSNL L GIP I KVF+R+ + I+S T F K EW+L+T+
Sbjct: 1251 DE-----VFLKRLETQMLSNLALRGIPDIKKVFIREAKQNAINSKTELFEKTTEWMLDTE 1305
Query: 366 GVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNYRHLS 545
GVN + VM H DVDFTRT SN ++E +VLGIEAVR TLL E+R VI FDG+YVNYRHL+
Sbjct: 1306 GVNLLEVMAHPDVDFTRTTSNHLIEVIQVLGIEAVRNTLLRELRGVIEFDGSYVNYRHLA 1365
Query: 546 VLV 554
+LV
Sbjct: 1366 ILV 1368
[10][TOP]
>UniRef100_C5LSN9 DNA-directed RNA polymerase n=1 Tax=Perkinsus marinus ATCC 50983
RepID=C5LSN9_9ALVE
Length = 1667
Score = 159 bits (402), Expect = 1e-37
Identities = 86/182 (47%), Positives = 115/182 (63%)
Frame = +3
Query: 6 RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
+I +GGD+ + S+DN+ L++R+R+ + E +S + D + +
Sbjct: 1252 KIVEDYGGDVQCIVSDDNSENLIVRIRLLRDTEVVLSLSLLL---YNDRVFNRPRRTDYD 1308
Query: 186 DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQDNKIVIDSVTGSFTKENEWLLETD 365
EED L+KVE LLS+LTL GIPG+ K +MRQDN++ S G+F + EW+L+TD
Sbjct: 1309 GEEDFR--LLKKVEGSLLSDLTLKGIPGVTKCYMRQDNRVQYSSDVGTFARSREWVLDTD 1366
Query: 366 GVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNYRHLS 545
G N V+ E VD TRT SNDIVE VLGIEA R LLNE+R VISFDG+YVNYRH+S
Sbjct: 1367 GCNLEQVLTMEAVDSTRTFSNDIVEILNVLGIEACRKALLNELRQVISFDGSYVNYRHMS 1426
Query: 546 VL 551
VL
Sbjct: 1427 VL 1428
[11][TOP]
>UniRef100_UPI0000E12351 Os05g0151000 n=1 Tax=Oryza sativa Japonica Group RepID=UPI0000E12351
Length = 2085
Score = 158 bits (399), Expect = 3e-37
Identities = 83/182 (45%), Positives = 117/182 (64%)
Frame = +3
Query: 6 RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
+I+ F DL + ++DNA +L++RVR+ + K E++
Sbjct: 1233 KINHEFDDDLSCIFNDDNADKLILRVRITNDEAQKG---------------------EIQ 1271
Query: 186 DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQDNKIVIDSVTGSFTKENEWLLETD 365
DE +D+FL+K+ES +L+ + L GIPGI+KVF+++ N + G F E W+L+T+
Sbjct: 1272 DEYGEDDVFLKKIESNMLTEMALRGIPGINKVFIKEGNVNKFEDNDG-FKTEKGWMLDTE 1330
Query: 366 GVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNYRHLS 545
GVN +AVM HEDVD TRT SN ++E EVLGIEAVR LL+E+R VISFDG+YVNYRHL+
Sbjct: 1331 GVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLA 1390
Query: 546 VL 551
VL
Sbjct: 1391 VL 1392
[12][TOP]
>UniRef100_Q5WMZ9 DNA-directed RNA polymerase n=1 Tax=Oryza sativa Japonica Group
RepID=Q5WMZ9_ORYSJ
Length = 1741
Score = 158 bits (399), Expect = 3e-37
Identities = 83/182 (45%), Positives = 117/182 (64%)
Frame = +3
Query: 6 RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
+I+ F DL + ++DNA +L++RVR+ + K E++
Sbjct: 1180 KINHEFDDDLSCIFNDDNADKLILRVRITNDEAQKG---------------------EIQ 1218
Query: 186 DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQDNKIVIDSVTGSFTKENEWLLETD 365
DE +D+FL+K+ES +L+ + L GIPGI+KVF+++ N + G F E W+L+T+
Sbjct: 1219 DEYGEDDVFLKKIESNMLTEMALRGIPGINKVFIKEGNVNKFEDNDG-FKTEKGWMLDTE 1277
Query: 366 GVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNYRHLS 545
GVN +AVM HEDVD TRT SN ++E EVLGIEAVR LL+E+R VISFDG+YVNYRHL+
Sbjct: 1278 GVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLA 1337
Query: 546 VL 551
VL
Sbjct: 1338 VL 1339
[13][TOP]
>UniRef100_Q0DKN9 DNA-directed RNA polymerase n=1 Tax=Oryza sativa Japonica Group
RepID=Q0DKN9_ORYSJ
Length = 1834
Score = 158 bits (399), Expect = 3e-37
Identities = 83/182 (45%), Positives = 117/182 (64%)
Frame = +3
Query: 6 RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
+I+ F DL + ++DNA +L++RVR+ + K E++
Sbjct: 1233 KINHEFDDDLSCIFNDDNADKLILRVRITNDEAQKG---------------------EIQ 1271
Query: 186 DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQDNKIVIDSVTGSFTKENEWLLETD 365
DE +D+FL+K+ES +L+ + L GIPGI+KVF+++ N + G F E W+L+T+
Sbjct: 1272 DEYGEDDVFLKKIESNMLTEMALRGIPGINKVFIKEGNVNKFEDNDG-FKTEKGWMLDTE 1330
Query: 366 GVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNYRHLS 545
GVN +AVM HEDVD TRT SN ++E EVLGIEAVR LL+E+R VISFDG+YVNYRHL+
Sbjct: 1331 GVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLA 1390
Query: 546 VL 551
VL
Sbjct: 1391 VL 1392
[14][TOP]
>UniRef100_Q99366 DNA-directed RNA polymerase (Fragment) n=1 Tax=Glycine max
RepID=Q99366_SOYBN
Length = 625
Score = 157 bits (397), Expect = 5e-37
Identities = 81/182 (44%), Positives = 117/182 (64%)
Frame = +3
Query: 6 RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
+I+ F DL + ++DNA +L++R+R+ + K E++
Sbjct: 59 KINLEFDDDLTCIFNDDNAEKLILRIRIMNDEAPKG---------------------EIQ 97
Query: 186 DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQDNKIVIDSVTGSFTKENEWLLETD 365
DE +D+FL+K+ES +L+ +TL GIP I+KVF++ + K+ V F EW+L+T+
Sbjct: 98 DESAEDDVFLKKIESNMLTEMTLRGIPDINKVFIK-NTKVQKFDVNQGFKPNEEWMLDTE 156
Query: 366 GVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNYRHLS 545
GVN +AVM HEDVD TRT SN ++E EVLGIEAVR LL+E+R VISFDG+YVNYRHL+
Sbjct: 157 GVNLLAVMCHEDVDVTRTTSNHLIEVIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLA 216
Query: 546 VL 551
+L
Sbjct: 217 IL 218
[15][TOP]
>UniRef100_P35084 DNA-directed RNA polymerase II subunit rpb1 n=1 Tax=Dictyostelium
discoideum RepID=RPB1_DICDI
Length = 1727
Score = 157 bits (397), Expect = 5e-37
Identities = 84/177 (47%), Positives = 109/177 (61%)
Frame = +3
Query: 21 FGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEMEDEEDA 200
FG L+ + S+DNA +L++R+R+ E K + D
Sbjct: 1237 FGLSLNCIFSDDNAEKLILRIRMVESQETKG------------------------TDNDD 1272
Query: 201 EDLFLRKVESQLLSNLTLSGIPGIDKVFMRQDNKIVIDSVTGSFTKENEWLLETDGVNFI 380
+D FLR++ES +LS + L GI GI KVFMR D+KI + G F EW+L+TDGV+ +
Sbjct: 1273 DDQFLRRIESNMLSEMVLRGIKGIKKVFMRTDDKIPKVTENGGFGVREEWILDTDGVSLL 1332
Query: 381 AVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNYRHLSVL 551
VM H DVD TRT SNDIVE +VLGIEAVR LL E+R VISFDG+YVNYRHL++L
Sbjct: 1333 EVMSHPDVDHTRTTSNDIVEIIQVLGIEAVRNALLKELRAVISFDGSYVNYRHLAIL 1389
[16][TOP]
>UniRef100_C5Y387 DNA-directed RNA polymerase n=1 Tax=Sorghum bicolor
RepID=C5Y387_SORBI
Length = 1874
Score = 156 bits (395), Expect = 8e-37
Identities = 82/183 (44%), Positives = 118/183 (64%)
Frame = +3
Query: 3 NRIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEM 182
N I+ F GDL + S+DNA +L++R+R+ + + E+
Sbjct: 1231 NEINREFDGDLSCIFSDDNADKLILRLRIINDEASRG---------------------EI 1269
Query: 183 EDEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQDNKIVIDSVTGSFTKENEWLLET 362
D+ +++FL+K+ES +L+ ++L GIP I+KVF+++ D V+ F + EW+L+T
Sbjct: 1270 LDDSAGDEVFLKKIESNMLAEMSLRGIPDINKVFIKEVKVNKFD-VSDGFKEHKEWMLDT 1328
Query: 363 DGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNYRHL 542
DGVN +AVM HEDVD TRT SN + E EVLGIEAVR LL+E+R+VISFDG+YVNYRHL
Sbjct: 1329 DGVNLLAVMCHEDVDATRTTSNHLTEVIEVLGIEAVRRALLDELRSVISFDGSYVNYRHL 1388
Query: 543 SVL 551
+VL
Sbjct: 1389 AVL 1391
[17][TOP]
>UniRef100_P18616 DNA-directed RNA polymerase II subunit RPB1 n=1 Tax=Arabidopsis
thaliana RepID=RPB1_ARATH
Length = 1840
Score = 156 bits (394), Expect = 1e-36
Identities = 83/182 (45%), Positives = 117/182 (64%)
Frame = +3
Query: 6 RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
+I+ F DL + ++DNA +L++R+R+ M +E G E++
Sbjct: 1234 KINLEFDDDLTCIFNDDNAQKLILRIRI-MNDEGPKG--------------------ELQ 1272
Query: 186 DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQDNKIVIDSVTGSFTKENEWLLETD 365
DE +D+FL+K+ES +L+ + L GIP I+KVF++Q K D G F EW+L+T+
Sbjct: 1273 DESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKQVRKSRFDE-EGGFKTSEEWMLDTE 1331
Query: 366 GVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNYRHLS 545
GVN +AVM HEDVD RT SN ++E EVLGIEAVR LL+E+R VISFDG+YVNYRHL+
Sbjct: 1332 GVNLLAVMCHEDVDPKRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLA 1391
Query: 546 VL 551
+L
Sbjct: 1392 IL 1393
[18][TOP]
>UniRef100_B9FZ51 DNA-directed RNA polymerase n=1 Tax=Oryza sativa Japonica Group
RepID=B9FZ51_ORYSJ
Length = 1526
Score = 155 bits (393), Expect = 1e-36
Identities = 81/182 (44%), Positives = 116/182 (63%)
Frame = +3
Query: 6 RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
+I+ F DL + ++DNA +L++RVR+ + K E++
Sbjct: 903 KINHEFDDDLSCIFNDDNADKLILRVRITNDEAPKG---------------------EIQ 941
Query: 186 DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQDNKIVIDSVTGSFTKENEWLLETD 365
DE +D+FL+K+ES +L+ + L GIP I+KVF++ + G F +NEW+L+T+
Sbjct: 942 DESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKYGKVNKFEDNVG-FKADNEWMLDTE 1000
Query: 366 GVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNYRHLS 545
GVN +AVM HEDVD TRT SN ++E EVLGIEAVR LL+E+R VISFDG+YVNYRHL+
Sbjct: 1001 GVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLA 1060
Query: 546 VL 551
+L
Sbjct: 1061 IL 1062
[19][TOP]
>UniRef100_A9QMS4 DNA-directed RNA polymerase (Fragment) n=1 Tax=Poikilolaimus
oxycercus RepID=A9QMS4_9BILA
Length = 612
Score = 155 bits (393), Expect = 1e-36
Identities = 90/186 (48%), Positives = 115/186 (61%), Gaps = 4/186 (2%)
Frame = +3
Query: 6 RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
RIH FGGDLH + S+DNA +LV R+R+A + DK ++ D +ME
Sbjct: 439 RIHCGFGGDLHTIYSDDNAEKLVFRLRIANVDTDK--------------EEPDEQVDKME 484
Query: 186 DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQ----DNKIVIDSVTGSFTKENEWL 353
D D FLR VES +LS+LTL GI I KV+M + D K +I + GSF EW+
Sbjct: 485 D-----DAFLRCVESNMLSDLTLQGIETIAKVYMHEATTDDKKKIIITADGSFETIPEWI 539
Query: 354 LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
LETDG + V+G +VD RT SNDI E FEVLGIEA R + E++ VISFDG+YVNY
Sbjct: 540 LETDGTALLRVLGEPNVDRIRTTSNDICEIFEVLGIEAARKAIEREMKHVISFDGSYVNY 599
Query: 534 RHLSVL 551
RHL++L
Sbjct: 600 RHLALL 605
[20][TOP]
>UniRef100_Q99368 DNA-directed RNA polymerase (Fragment) n=1 Tax=Glycine max
RepID=Q99368_SOYBN
Length = 977
Score = 155 bits (392), Expect = 2e-36
Identities = 80/182 (43%), Positives = 117/182 (64%)
Frame = +3
Query: 6 RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
+I+ F DL + ++DNA +L++R+R+ ++ K E++
Sbjct: 424 KINLEFDDDLSCIFNDDNAEKLILRIRIMNDDAPKG---------------------EVQ 462
Query: 186 DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQDNKIVIDSVTGSFTKENEWLLETD 365
DE +D+FL+K+E+ +L+ +TL GIP I+KVF++ D G F EW+L+T+
Sbjct: 463 DESAEDDVFLKKIETNMLTEMTLRGIPDINKVFIKNAKVQKFDENEG-FKSNGEWMLDTE 521
Query: 366 GVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNYRHLS 545
GVN +AVM HEDVD TRT SN ++E EVLGIEAVR +LL+E+R VISFDG+YVNYRHL+
Sbjct: 522 GVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRSLLDELRIVISFDGSYVNYRHLA 581
Query: 546 VL 551
+L
Sbjct: 582 IL 583
[21][TOP]
>UniRef100_B8BAW1 DNA-directed RNA polymerase n=1 Tax=Oryza sativa Indica Group
RepID=B8BAW1_ORYSI
Length = 1449
Score = 154 bits (389), Expect = 4e-36
Identities = 81/182 (44%), Positives = 115/182 (63%)
Frame = +3
Query: 6 RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
+I+ F DL + ++DNA +L++RVR+ + K E++
Sbjct: 1202 KINHEFDDDLSCIFNDDNADKLILRVRITNDEAPKG---------------------EIQ 1240
Query: 186 DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQDNKIVIDSVTGSFTKENEWLLETD 365
DE +D+FL+K+ES +L+ + L GIP I+KVF++ + G F +NEW+L T+
Sbjct: 1241 DESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKYGKVNKFEDNVG-FKADNEWMLVTE 1299
Query: 366 GVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNYRHLS 545
GVN +AVM HEDVD TRT SN ++E EVLGIEAVR LL+E+R VISFDG+YVNYRHL+
Sbjct: 1300 GVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLA 1359
Query: 546 VL 551
+L
Sbjct: 1360 IL 1361
[22][TOP]
>UniRef100_O01364 DNA-directed RNA polymerase (Fragment) n=1 Tax=Cruznema tripartitum
RepID=O01364_9BILA
Length = 633
Score = 154 bits (389), Expect = 4e-36
Identities = 88/187 (47%), Positives = 118/187 (63%), Gaps = 4/187 (2%)
Frame = +3
Query: 3 NRIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEM 182
+RIH FG DL+V+ ++DNA +LV R+R+ ++ DK G DE+ D+ M
Sbjct: 438 DRIHQGFGDDLNVIYTDDNADKLVFRLRITNQDGDKGG----------DEEQVDK----M 483
Query: 183 EDEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQ----DNKIVIDSVTGSFTKENEW 350
ED D+FLR +ES +LS+LTL GI I KV+M + D K VI + G F EW
Sbjct: 484 ED-----DMFLRCIESNMLSDLTLQGITSISKVYMHKPTTDDKKRVIITPEGGFKAIPEW 538
Query: 351 LLETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVN 530
+LETDG + V+ + VD RT SNDI E FE+LGIEAVR ++ E+ VISFDG+YVN
Sbjct: 539 ILETDGTALLKVLSEQHVDSVRTTSNDICEIFEILGIEAVRKSIEREMNNVISFDGSYVN 598
Query: 531 YRHLSVL 551
YRHL++L
Sbjct: 599 YRHLALL 605
[23][TOP]
>UniRef100_Q84KP6 DNA-directed RNA polymerase n=1 Tax=Cyanidioschyzon merolae
RepID=Q84KP6_CYAME
Length = 1819
Score = 154 bits (388), Expect = 6e-36
Identities = 81/198 (40%), Positives = 118/198 (59%), Gaps = 15/198 (7%)
Frame = +3
Query: 6 RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRV----- 170
R+ A FGGDL V+ S+DNA +LV+ +R+A + +K + E D +
Sbjct: 1225 RLRAEFGGDLSVVYSDDNAEQLVMHIRMAGDEYEKGALGVPILGESERLDDTLNLLGPGD 1284
Query: 171 ----------AAEMEDEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQDNKIVIDSV 320
A + E+ +D+FL+++E LL ++ L GIPGI KVF+RQ +++ D
Sbjct: 1285 MTAGGNQSLEALDSGTVEEQDDVFLKRIELALLEDMQLKGIPGIRKVFLRQTQRVLFDPE 1344
Query: 321 TGSFTKENEWLLETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRT 500
GSF EW+L+T+G +AV+ H DVD RT+SN+I E +VLGIEA R L NE+
Sbjct: 1345 AGSFRSAPEWVLDTEGTALLAVLSHPDVDARRTISNEITEVLQVLGIEAARQALYNEMYA 1404
Query: 501 VISFDGAYVNYRHLSVLV 554
V+SFDG+ V YRHL++LV
Sbjct: 1405 VLSFDGSSVGYRHLALLV 1422
[24][TOP]
>UniRef100_C5YGY9 DNA-directed RNA polymerase n=1 Tax=Sorghum bicolor
RepID=C5YGY9_SORBI
Length = 1857
Score = 154 bits (388), Expect = 6e-36
Identities = 79/183 (43%), Positives = 117/183 (63%)
Frame = +3
Query: 3 NRIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEM 182
++I+ F DL + ++DNA +L++R+R+ + K E+
Sbjct: 1230 DKINREFDDDLSCIFNDDNADKLILRIRITNDEAPKG---------------------EI 1268
Query: 183 EDEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQDNKIVIDSVTGSFTKENEWLLET 362
+DE +D+FL+K+E +L+ + L GIP I+KVF+++ K+ F NEW+L+T
Sbjct: 1269 QDESAEDDVFLKKIEGNMLTEMALRGIPDINKVFIKE-GKVNTFYQDEGFKAANEWMLDT 1327
Query: 363 DGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNYRHL 542
+GVN +AVM HEDVD TRT SN ++E EVLGIEAVR +LL+E+R VISFDG+YVNYRHL
Sbjct: 1328 EGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHL 1387
Query: 543 SVL 551
++L
Sbjct: 1388 AIL 1390
[25][TOP]
>UniRef100_A9QMQ6 RNA polymerase 2 (Fragment) n=1 Tax=Cruznema tripartitum
RepID=A9QMQ6_9BILA
Length = 335
Score = 154 bits (388), Expect = 6e-36
Identities = 88/187 (47%), Positives = 118/187 (63%), Gaps = 4/187 (2%)
Frame = +3
Query: 3 NRIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEM 182
+RIH FG DL+V+ ++DNA +LV R+R+ ++ DK G DE+ D+ M
Sbjct: 148 DRIHQGFGDDLNVIYTDDNADKLVFRLRITXQDGDKGG----------DEEQVDK----M 193
Query: 183 EDEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQ----DNKIVIDSVTGSFTKENEW 350
ED D+FLR +ES +LS+LTL GI I KV+M + D K VI + G F EW
Sbjct: 194 ED-----DMFLRCIESNMLSDLTLQGITSISKVYMHKPTTDDKKRVIITPEGGFKAIPEW 248
Query: 351 LLETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVN 530
+LETDG + V+ + VD RT SNDI E FE+LGIEAVR ++ E+ VISFDG+YVN
Sbjct: 249 ILETDGTALLKVLSEQHVDPVRTTSNDICEIFEILGIEAVRKSIEREMNNVISFDGSYVN 308
Query: 531 YRHLSVL 551
YRHL++L
Sbjct: 309 YRHLALL 315
[26][TOP]
>UniRef100_UPI0001985649 PREDICTED: similar to NRPB1 (RNA POLYMERASE II LARGE SUBUNIT); DNA
binding / DNA-directed RNA polymerase n=1 Tax=Vitis
vinifera RepID=UPI0001985649
Length = 1848
Score = 153 bits (387), Expect = 7e-36
Identities = 80/182 (43%), Positives = 115/182 (63%)
Frame = +3
Query: 6 RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
+I+ F DL + ++DNA +L++R+R+ + K E++
Sbjct: 1232 KINLEFDDDLTCIFNDDNAEKLILRIRIMNDEAPKG---------------------ELQ 1270
Query: 186 DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQDNKIVIDSVTGSFTKENEWLLETD 365
DE +D+FL+K+ES +L+ + L GIP I+KVF++ D G F E EW+L+T+
Sbjct: 1271 DESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKVNKFDESEG-FKPEVEWMLDTE 1329
Query: 366 GVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNYRHLS 545
GVN +AVM HEDVD RT SN ++E EVLGIEAVR +LL+E+R VISFDG+YVNYRHL+
Sbjct: 1330 GVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLA 1389
Query: 546 VL 551
+L
Sbjct: 1390 IL 1391
[27][TOP]
>UniRef100_A7NVN7 DNA-directed RNA polymerase n=1 Tax=Vitis vinifera
RepID=A7NVN7_VITVI
Length = 1010
Score = 153 bits (387), Expect = 7e-36
Identities = 80/182 (43%), Positives = 115/182 (63%)
Frame = +3
Query: 6 RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
+I+ F DL + ++DNA +L++R+R+ + K E++
Sbjct: 469 KINLEFDDDLTCIFNDDNAEKLILRIRIMNDEAPKG---------------------ELQ 507
Query: 186 DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQDNKIVIDSVTGSFTKENEWLLETD 365
DE +D+FL+K+ES +L+ + L GIP I+KVF++ D G F E EW+L+T+
Sbjct: 508 DESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKVNKFDESEG-FKPEVEWMLDTE 566
Query: 366 GVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNYRHLS 545
GVN +AVM HEDVD RT SN ++E EVLGIEAVR +LL+E+R VISFDG+YVNYRHL+
Sbjct: 567 GVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLA 626
Query: 546 VL 551
+L
Sbjct: 627 IL 628
[28][TOP]
>UniRef100_A9TK89 DNA-directed RNA polymerase n=1 Tax=Physcomitrella patens subsp.
patens RepID=A9TK89_PHYPA
Length = 1646
Score = 152 bits (384), Expect = 2e-35
Identities = 81/182 (44%), Positives = 118/182 (64%)
Frame = +3
Query: 6 RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
+I+ F DL + ++DNA +L++R+R+ D+A ++T
Sbjct: 1220 KINLEFDDDLTCIFNDDNAEKLILRIRIM---NDEAPKGEAT------------------ 1258
Query: 186 DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQDNKIVIDSVTGSFTKENEWLLETD 365
E+ +D+FL+K+ES +L+ + L GIP I KVF+++D K D +F E EW+L+T+
Sbjct: 1259 -EQSEDDVFLKKIESNMLTEMALRGIPDIRKVFIKEDKKNRFDENV-AFEPEKEWILDTE 1316
Query: 366 GVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNYRHLS 545
GVN +AVM HEDVD +RT+SN ++E EVLGIEAVR LL E+R VISFDG+YVNYRHL+
Sbjct: 1317 GVNMLAVMCHEDVDASRTLSNHLIEVIEVLGIEAVRNALLKELRDVISFDGSYVNYRHLA 1376
Query: 546 VL 551
+L
Sbjct: 1377 IL 1378
[29][TOP]
>UniRef100_Q6E232 RNA polymersae 2 (Fragment) n=1 Tax=Caenorhabditis sp. PS1010
RepID=Q6E232_9PELO
Length = 601
Score = 152 bits (383), Expect = 2e-35
Identities = 86/187 (45%), Positives = 116/187 (62%), Gaps = 4/187 (2%)
Frame = +3
Query: 3 NRIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEM 182
+RIH+ FG D+H + ++DNA +LV R+R+A E++ G E+ D+ M
Sbjct: 425 DRIHSGFGQDVHTIYTDDNAEKLVFRLRIAGEDKAAEG----------QEEQVDK----M 470
Query: 183 EDEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQ----DNKIVIDSVTGSFTKENEW 350
ED D+FLR +E+ +LS+LTL GIP I KV+M Q D K +I + G F EW
Sbjct: 471 ED-----DVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKKRIIITEEGGFKSITEW 525
Query: 351 LLETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVN 530
+LETDG + V+ +D RT SNDI E FEVLGIEAVR + E+ VISFDG+YVN
Sbjct: 526 ILETDGTALLRVLSERQIDPVRTSSNDICEIFEVLGIEAVRKAIEREMHNVISFDGSYVN 585
Query: 531 YRHLSVL 551
YRHL++L
Sbjct: 586 YRHLALL 592
[30][TOP]
>UniRef100_O01376 DNA-directed RNA polymerase (Fragment) n=1 Tax=unidentified
nematode RepID=O01376_9BILA
Length = 633
Score = 152 bits (383), Expect = 2e-35
Identities = 86/187 (45%), Positives = 116/187 (62%), Gaps = 4/187 (2%)
Frame = +3
Query: 3 NRIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEM 182
+RIH+ FG D+H + ++DNA +LV R+R+A E++ G E+ D+ M
Sbjct: 438 DRIHSGFGQDVHTIYTDDNAEKLVFRLRIAGEDKAAEG----------QEEQVDK----M 483
Query: 183 EDEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQ----DNKIVIDSVTGSFTKENEW 350
ED D+FLR +E+ +LS+LTL GIP I KV+M Q D K +I + G F EW
Sbjct: 484 ED-----DVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKKRIIITEEGGFKSITEW 538
Query: 351 LLETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVN 530
+LETDG + V+ +D RT SNDI E FEVLGIEAVR + E+ VISFDG+YVN
Sbjct: 539 ILETDGTALLRVLSERQIDPVRTSSNDICEIFEVLGIEAVRKAIEREMHNVISFDGSYVN 598
Query: 531 YRHLSVL 551
YRHL++L
Sbjct: 599 YRHLALL 605
[31][TOP]
>UniRef100_UPI00005A0B1D PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
(RPB1) isoform 1 n=2 Tax=Canis lupus familiaris
RepID=UPI00005A0B1D
Length = 1764
Score = 151 bits (382), Expect = 3e-35
Identities = 83/186 (44%), Positives = 119/186 (63%), Gaps = 4/186 (2%)
Frame = +3
Query: 6 RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
+I+A FG DL+ + ++DNA +LV+R+R+ +E+K + + D + V +M+
Sbjct: 1252 KINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKMQEVKGLQEEMDSGADEEEVVDKMD 1311
Query: 186 DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMR----QDNKIVIDSVTGSFTKENEWL 353
D D+FLR +ES +L+++TL GI I KV+M + K +I + G F EW+
Sbjct: 1312 D-----DVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWI 1366
Query: 354 LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
LETDGV+ + V+ +DVD RT SNDIVE F VLGIEAVR L E+ VISFDG+YVNY
Sbjct: 1367 LETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNY 1426
Query: 534 RHLSVL 551
RHL++L
Sbjct: 1427 RHLALL 1432
[32][TOP]
>UniRef100_A9U396 DNA-directed RNA polymerase n=1 Tax=Physcomitrella patens subsp.
patens RepID=A9U396_PHYPA
Length = 1742
Score = 151 bits (382), Expect = 3e-35
Identities = 79/182 (43%), Positives = 116/182 (63%)
Frame = +3
Query: 6 RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
+I+ F DL + ++DNA +L++R+R+ + K ++
Sbjct: 1235 KINLEFDDDLTCIFNDDNAEKLILRIRIMNDEAPKGEMT--------------------- 1273
Query: 186 DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQDNKIVIDSVTGSFTKENEWLLETD 365
E+ +D+FL+K+ES +L+ + L GIP I KVF+++D K D +F E EW+L+T+
Sbjct: 1274 -EQSEDDVFLKKIESNMLTEMALRGIPDIRKVFIKEDKKNRFDENL-AFVVEQEWVLDTE 1331
Query: 366 GVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNYRHLS 545
GVN +AVM HEDVD +RT SN ++E EVLGIEAVR +LL E+R VISFDG+YVNYRHL+
Sbjct: 1332 GVNMLAVMCHEDVDASRTTSNHLIEVIEVLGIEAVRNSLLKELRDVISFDGSYVNYRHLA 1391
Query: 546 VL 551
+L
Sbjct: 1392 IL 1393
[33][TOP]
>UniRef100_Q6E231 RNA polymerase 2 (Fragment) n=1 Tax=Caenorhabditis brenneri
RepID=Q6E231_CAEBE
Length = 596
Score = 151 bits (382), Expect = 3e-35
Identities = 85/187 (45%), Positives = 116/187 (62%), Gaps = 4/187 (2%)
Frame = +3
Query: 3 NRIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEM 182
+RIH FG D+H + ++DNA +LV R+R+A E++ G E+ D+ M
Sbjct: 417 DRIHGGFGNDVHTIYTDDNAEKLVFRLRIAGEDKGAEG----------QEEQVDK----M 462
Query: 183 EDEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQ----DNKIVIDSVTGSFTKENEW 350
ED D+FLR +E+ +LS+LTL GIP I KV+M Q D K +I + G F +W
Sbjct: 463 ED-----DVFLRCIEANMLSDLTLQGIPAISKVYMNQPQTDDKKRIIITPEGGFKAVADW 517
Query: 351 LLETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVN 530
+LETDG + V+ + +D RT SNDI E FEVLGIEAVR + E+ VISFDG+YVN
Sbjct: 518 ILETDGTALLRVLSEQQIDPVRTTSNDICEIFEVLGIEAVRKAIEREMDNVISFDGSYVN 577
Query: 531 YRHLSVL 551
YRHL++L
Sbjct: 578 YRHLALL 584
[34][TOP]
>UniRef100_A9QMG1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Oscheius
dolichuroides RepID=A9QMG1_9BILA
Length = 629
Score = 151 bits (382), Expect = 3e-35
Identities = 85/187 (45%), Positives = 120/187 (64%), Gaps = 4/187 (2%)
Frame = +3
Query: 3 NRIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEM 182
++IH+ FG DL+V+ ++DNA +LV R+R+ + +DKA +E+ D+ M
Sbjct: 445 DKIHSGFGDDLNVIYTDDNADKLVFRIRITNQGDDKA-----------EEEQIDK----M 489
Query: 183 EDEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQ----DNKIVIDSVTGSFTKENEW 350
ED D+FLR +ES +LS+LTL GIP I KV+M + D K V+ + G F +W
Sbjct: 490 ED-----DMFLRCIESNMLSDLTLQGIPSIAKVYMHKPNTDDKKRVVVTPEGDFKHIADW 544
Query: 351 LLETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVN 530
+LETDG + V+ ++D RT SNDI E FEVLGIEAVR ++ E+ VISFDG+YVN
Sbjct: 545 ILETDGTALLKVLSEPNIDPVRTTSNDICEIFEVLGIEAVRKSIEREMDNVISFDGSYVN 604
Query: 531 YRHLSVL 551
YRHL++L
Sbjct: 605 YRHLALL 611
[35][TOP]
>UniRef100_A9QMF9 DNA-directed RNA polymerase (Fragment) n=1 Tax=Rhabditis rainai
RepID=A9QMF9_9BILA
Length = 618
Score = 151 bits (381), Expect = 4e-35
Identities = 85/187 (45%), Positives = 116/187 (62%), Gaps = 4/187 (2%)
Frame = +3
Query: 3 NRIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEM 182
+RIH FG DL+V+ ++DNA +LV R+R+A +DK+G + + ED
Sbjct: 433 DRIHHGFGDDLNVIYTDDNADKLVFRLRIA-NVDDKSGAEEEQVDKMED----------- 480
Query: 183 EDEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQ----DNKIVIDSVTGSFTKENEW 350
D+FLR +ES +LS+LTL GIP I KV+M + D K VI + G F ++W
Sbjct: 481 -------DVFLRCIESNMLSDLTLQGIPSISKVYMHKPNTDDKKRVIITPEGDFQYISDW 533
Query: 351 LLETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVN 530
+LETDG + V+ +D RT SNDI E FEVLGIEAVR ++ E+ VISFDG+YVN
Sbjct: 534 ILETDGTALLRVLSEPSIDAVRTTSNDICEIFEVLGIEAVRKSIEREMNNVISFDGSYVN 593
Query: 531 YRHLSVL 551
YRHL++L
Sbjct: 594 YRHLALL 600
[36][TOP]
>UniRef100_P16356 DNA-directed RNA polymerase II subunit RPB1 n=1 Tax=Caenorhabditis
elegans RepID=RPB1_CAEEL
Length = 1852
Score = 151 bits (381), Expect = 4e-35
Identities = 85/187 (45%), Positives = 116/187 (62%), Gaps = 4/187 (2%)
Frame = +3
Query: 3 NRIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEM 182
+RIH FG D+H + ++DNA +LV R+R+A E++ +A E+ D+ M
Sbjct: 1223 DRIHGGFGNDVHTIYTDDNAEKLVFRLRIAGEDKGEA-----------QEEQVDK----M 1267
Query: 183 EDEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQ----DNKIVIDSVTGSFTKENEW 350
ED D+FLR +E+ +LS+LTL GIP I KV+M Q D K +I + G F +W
Sbjct: 1268 ED-----DVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKKRIIITPEGGFKSVADW 1322
Query: 351 LLETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVN 530
+LETDG + V+ +D RT SNDI E FEVLGIEAVR + E+ VISFDG+YVN
Sbjct: 1323 ILETDGTALLRVLSERQIDPVRTTSNDICEIFEVLGIEAVRKAIEREMDNVISFDGSYVN 1382
Query: 531 YRHLSVL 551
YRHL++L
Sbjct: 1383 YRHLALL 1389
[37][TOP]
>UniRef100_A9QMF5 DNA-directed RNA polymerase (Fragment) n=1 Tax=Rhabditoides inermis
RepID=A9QMF5_9BILA
Length = 630
Score = 150 bits (380), Expect = 5e-35
Identities = 86/186 (46%), Positives = 117/186 (62%), Gaps = 4/186 (2%)
Frame = +3
Query: 6 RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
RIH FG DL+V+ ++DNA +LV R+R+ ++ DK DE+ D+ ME
Sbjct: 435 RIHQGFGDDLNVIYTDDNADKLVFRLRITNQDNDKG-----------DEEQIDK----ME 479
Query: 186 DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQ----DNKIVIDSVTGSFTKENEWL 353
D D+FLR +ES +LS+LTL GI I KV+M + D K ++ + GSF +WL
Sbjct: 480 D-----DVFLRCIESNMLSDLTLQGIEAIAKVYMHKPTTDDKKKIVITPDGSFKAIEQWL 534
Query: 354 LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
LETDG + V+ +VD RT SNDI E FE+LGIEAVR ++ E+ VISFDG+YVNY
Sbjct: 535 LETDGTALLKVLSERNVDTIRTTSNDICEIFEILGIEAVRKSIEKEMHQVISFDGSYVNY 594
Query: 534 RHLSVL 551
RHL++L
Sbjct: 595 RHLALL 600
[38][TOP]
>UniRef100_O77375 DNA-directed RNA polymerase n=1 Tax=Plasmodium falciparum 3D7
RepID=O77375_PLAF7
Length = 2457
Score = 150 bits (379), Expect = 6e-35
Identities = 83/169 (49%), Positives = 109/169 (64%), Gaps = 1/169 (0%)
Frame = +3
Query: 48 SEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME-DEEDAEDLFLRKV 224
++DN +++ I+ E+ D A + STK ED + ++ E ED ED FL+K+
Sbjct: 1816 NDDNKSDITIK-----EDNDVAFMKTSTKNAEEDLELKNKNHIEHNISREDTEDTFLKKL 1870
Query: 225 ESQLLSNLTLSGIPGIDKVFMRQDNKIVIDSVTGSFTKENEWLLETDGVNFIAVMGHEDV 404
Q LS L L GI I KV+MR+++KI DS G F + + W+L+TDG N + V
Sbjct: 1871 MEQCLSTLKLRGIENITKVYMREESKITYDSDNGKFVRSSHWVLDTDGCNLENIFCAPQV 1930
Query: 405 DFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNYRHLSVL 551
DF +TVSNDIVE FEVLGIEAVR LL E+RTVISFD +YVNYRHLS+L
Sbjct: 1931 DFKKTVSNDIVEIFEVLGIEAVRRALLKELRTVISFDSSYVNYRHLSIL 1979
[39][TOP]
>UniRef100_P14248 DNA-directed RNA polymerase II subunit RPB1 n=1 Tax=Plasmodium
falciparum CDC/Honduras RepID=RPB1_PLAFD
Length = 2452
Score = 150 bits (379), Expect = 6e-35
Identities = 83/169 (49%), Positives = 109/169 (64%), Gaps = 1/169 (0%)
Frame = +3
Query: 48 SEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME-DEEDAEDLFLRKV 224
++DN +++ I+ E+ D A + STK ED + ++ E ED ED FL+K+
Sbjct: 1818 NDDNKSDITIK-----EDNDVAFMKTSTKNAEEDLELKNKNHIEHNISREDTEDTFLKKL 1872
Query: 225 ESQLLSNLTLSGIPGIDKVFMRQDNKIVIDSVTGSFTKENEWLLETDGVNFIAVMGHEDV 404
Q LS L L GI I KV+MR+++KI DS G F + + W+L+TDG N + V
Sbjct: 1873 MEQCLSTLKLRGIENITKVYMREESKITYDSDNGKFVRSSHWVLDTDGCNLENIFCAPQV 1932
Query: 405 DFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNYRHLSVL 551
DF +TVSNDIVE FEVLGIEAVR LL E+RTVISFD +YVNYRHLS+L
Sbjct: 1933 DFKKTVSNDIVEIFEVLGIEAVRRALLKELRTVISFDSSYVNYRHLSIL 1981
[40][TOP]
>UniRef100_P35074 DNA-directed RNA polymerase II subunit RPB1 n=1 Tax=Caenorhabditis
briggsae RepID=RPB1_CAEBR
Length = 1853
Score = 150 bits (379), Expect = 6e-35
Identities = 85/187 (45%), Positives = 116/187 (62%), Gaps = 4/187 (2%)
Frame = +3
Query: 3 NRIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEM 182
+RIH FG D+H + ++DNA +LV R+R+A E++ G E+ D+ M
Sbjct: 1227 DRIHGGFGQDVHTIYTDDNAEKLVFRLRIAGEDKGAEG----------QEEQVDK----M 1272
Query: 183 EDEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQ----DNKIVIDSVTGSFTKENEW 350
ED D+FLR +E+ +LS+LTL GIP I KV+M Q D K +I + G F +W
Sbjct: 1273 ED-----DVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKKRIIITPEGGFKAVADW 1327
Query: 351 LLETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVN 530
+LETDG + V+ +D RT SNDI E FEVLGIEAVR ++ E+ VISFDG+YVN
Sbjct: 1328 ILETDGTALLRVLSERQIDPVRTTSNDICEIFEVLGIEAVRKSIEKEMDNVISFDGSYVN 1387
Query: 531 YRHLSVL 551
YRHL++L
Sbjct: 1388 YRHLALL 1394
[41][TOP]
>UniRef100_Q30BD9 DNA-directed RNA polymerase n=1 Tax=Glaucocystis nostochinearum
RepID=Q30BD9_9EUKA
Length = 1852
Score = 150 bits (378), Expect = 8e-35
Identities = 84/182 (46%), Positives = 110/182 (60%)
Frame = +3
Query: 6 RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
RI FGGDLHV+ S+DNAA+L + +R+ + E+ E+E D
Sbjct: 1224 RIAVDFGGDLHVIYSDDNAAKLSLHIRIKNQEEEAKNQ--------EEEASGD------- 1268
Query: 186 DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQDNKIVIDSVTGSFTKENEWLLETD 365
E FLR++E +L+ + L GI I KVFMR+ KI D+ + E EW+L+T+
Sbjct: 1269 -----EHEFLRRIEGDMLTEMALRGIAQIRKVFMREAKKITFDA-DHKYMHEKEWVLDTE 1322
Query: 366 GVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNYRHLS 545
G N + VM +DVD TRT SNDIVE +VLGIEAVR L E+R VISFDG+YVNYRHL+
Sbjct: 1323 GCNLLEVMSCQDVDHTRTTSNDIVEIIQVLGIEAVRQAALKELRDVISFDGSYVNYRHLA 1382
Query: 546 VL 551
L
Sbjct: 1383 TL 1384
[42][TOP]
>UniRef100_B7G9I2 DNA-directed RNA polymerase (Fragment) n=1 Tax=Phaeodactylum
tricornutum CCAP 1055/1 RepID=B7G9I2_PHATR
Length = 1706
Score = 150 bits (378), Expect = 8e-35
Identities = 79/182 (43%), Positives = 114/182 (62%)
Frame = +3
Query: 9 IHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEMED 188
I +G DL+V ++DNA E+V+R+R+ + +G +D +D+ + +
Sbjct: 1172 IGEEYGADLNVEVTDDNADEMVVRIRIVNDTPFNSGQTDEGGNLMDDQPEVGQ------- 1224
Query: 189 EEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQDNKIVIDSVTGSFTKENEWLLETDG 368
+D+FL+++E +LS+L L G+ + KVFMR K + F +EW+LETDG
Sbjct: 1225 ---EDDIFLKRLEKSMLSSLKLRGVDHVKKVFMRGGAKRTVWDDVKGFGVRDEWVLETDG 1281
Query: 369 VNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNYRHLSV 548
N +AV+G + VD TR+VSNDIVE F LGIE VR LL+E+R VISFDG+YVNYRHL+
Sbjct: 1282 TNLMAVLGVDYVDGTRSVSNDIVEVFVALGIEGVRGALLSELRNVISFDGSYVNYRHLAC 1341
Query: 549 LV 554
LV
Sbjct: 1342 LV 1343
[43][TOP]
>UniRef100_A9QME5 RNA polymerase 2 (Fragment) n=1 Tax=Oscheius dolichura
RepID=A9QME5_9BILA
Length = 371
Score = 150 bits (378), Expect = 8e-35
Identities = 84/187 (44%), Positives = 119/187 (63%), Gaps = 4/187 (2%)
Frame = +3
Query: 3 NRIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEM 182
++IH+ FG DL+V+ ++DNA +LV R+R+ + +DK +E+ D+ M
Sbjct: 197 DKIHSGFGDDLNVIYTDDNADKLVFRIRITNQGDDKG-----------EEEQIDK----M 241
Query: 183 EDEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQ----DNKIVIDSVTGSFTKENEW 350
ED D+FLR +ES +LS+LTL GIP I KV+M + D K V+ + G F +W
Sbjct: 242 ED-----DMFLRCIESNMLSDLTLQGIPSIAKVYMHKPNTDDKKRVVVTPEGDFKHIADW 296
Query: 351 LLETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVN 530
+LETDG + V+ ++D RT SNDI E FEVLGIEAVR ++ E+ VISFDG+YVN
Sbjct: 297 ILETDGTALLKVLSEPNIDPVRTTSNDICEIFEVLGIEAVRKSIEREMDNVISFDGSYVN 356
Query: 531 YRHLSVL 551
YRHL++L
Sbjct: 357 YRHLALL 363
[44][TOP]
>UniRef100_B8BQ02 DNA-directed RNA polymerase n=1 Tax=Thalassiosira pseudonana CCMP1335
RepID=B8BQ02_THAPS
Length = 1627
Score = 149 bits (377), Expect = 1e-34
Identities = 82/178 (46%), Positives = 112/178 (62%)
Frame = +3
Query: 21 FGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEMEDEEDA 200
+G DL+V+ S+DNA +LV R+R+ + G+ + P D D V ED
Sbjct: 1238 YGSDLNVLVSDDNADDLVARIRIVNDLPMVQGMDEDGNPIMTD----DDVELGQED---- 1289
Query: 201 EDLFLRKVESQLLSNLTLSGIPGIDKVFMRQDNKIVIDSVTGSFTKENEWLLETDGVNFI 380
D+FL+++E +L L L G+ + KVFMR K + F +EW+LETDG N +
Sbjct: 1290 -DVFLKRLEKNMLHTLKLRGVDDVKKVFMRGGAKKTVWDDEKGFGITDEWVLETDGTNLM 1348
Query: 381 AVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNYRHLSVLV 554
+V+G + VD TRT+SNDIVE F VLGIE VRA +L+E+R VISFDG+YVNYRHL+ LV
Sbjct: 1349 SVLGIDYVDATRTISNDIVEVFMVLGIEGVRAAILSELRNVISFDGSYVNYRHLACLV 1406
[45][TOP]
>UniRef100_Q6E233 RNA polymerase 2 (Fragment) n=1 Tax=Caenorhabditis remanei
RepID=Q6E233_CAERE
Length = 611
Score = 149 bits (376), Expect = 1e-34
Identities = 86/187 (45%), Positives = 115/187 (61%), Gaps = 4/187 (2%)
Frame = +3
Query: 3 NRIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEM 182
+RIH FG D+H + ++DNA +LV R+R+A EDK + E+ D+ M
Sbjct: 425 DRIHGGFGNDVHTIYTDDNAEKLVFRLRIA--GEDKGADTQ--------EEQVDK----M 470
Query: 183 EDEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQ----DNKIVIDSVTGSFTKENEW 350
ED D+FLR +E+ +LS+LTL GIP I KV+M Q D K +I + G F +W
Sbjct: 471 ED-----DVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKKRIIITPEGGFKAVADW 525
Query: 351 LLETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVN 530
+LETDG + V+ +D RT SNDI E FEVLGIEAVR + E+ VISFDG+YVN
Sbjct: 526 ILETDGTALLRVLSERQIDPVRTTSNDICEIFEVLGIEAVRKAIEREMDNVISFDGSYVN 585
Query: 531 YRHLSVL 551
YRHL++L
Sbjct: 586 YRHLALL 592
[46][TOP]
>UniRef100_B9SXC0 DNA-directed RNA polymerase n=1 Tax=Ricinus communis
RepID=B9SXC0_RICCO
Length = 1855
Score = 149 bits (375), Expect = 2e-34
Identities = 79/182 (43%), Positives = 115/182 (63%)
Frame = +3
Query: 6 RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
+I+ F DL + ++DNA +L++R+R+ + K E+
Sbjct: 1232 KINLEFDDDLTCIFNDDNAEKLILRIRIMNDEAPKG---------------------ELN 1270
Query: 186 DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQDNKIVIDSVTGSFTKENEWLLETD 365
DE +D+FL+K+ES +L+ + L GIP I+KVF++Q D G T E EW+L+T+
Sbjct: 1271 DESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKQSKVSKFDENEGFKTIE-EWMLDTE 1329
Query: 366 GVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNYRHLS 545
GVN +AVM +E+VD RT SN ++E EVLGIEAVR +LL+E+R VISFDG+YVNYRHL+
Sbjct: 1330 GVNLLAVMCNENVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLA 1389
Query: 546 VL 551
+L
Sbjct: 1390 IL 1391
[47][TOP]
>UniRef100_Q6E224 DNA-directed RNA polymerase (Fragment) n=1 Tax=Caenorhabditis
drosophilae RepID=Q6E224_9PELO
Length = 633
Score = 149 bits (375), Expect = 2e-34
Identities = 82/187 (43%), Positives = 116/187 (62%), Gaps = 4/187 (2%)
Frame = +3
Query: 3 NRIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEM 182
+RIH+ FG D+H + ++DNA +LV R+R+A +++ + E+ D+ M
Sbjct: 441 DRIHSGFGNDVHTIYTDDNAEKLVFRLRIAGDDKGEG-----------QEEQVDK----M 485
Query: 183 EDEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQ----DNKIVIDSVTGSFTKENEW 350
ED D+FLR +E+ +L++LTL GIP I KV+M Q D K + + G F EW
Sbjct: 486 ED-----DVFLRCIEANMLADLTLQGIPSISKVYMNQPNTDDKKRTVITDEGGFKSITEW 540
Query: 351 LLETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVN 530
+LETDG + V+ + +D RT SNDI E FEVLGIEAVR + E+ VISFDG+YVN
Sbjct: 541 ILETDGTALLRVLAEQQIDPVRTTSNDICEIFEVLGIEAVRKAIEREMHNVISFDGSYVN 600
Query: 531 YRHLSVL 551
YRHL++L
Sbjct: 601 YRHLALL 607
[48][TOP]
>UniRef100_Q6E223 RNA polymerase 2 (Fragment) n=1 Tax=Caenorhabditis sp. DF5070
RepID=Q6E223_9PELO
Length = 606
Score = 149 bits (375), Expect = 2e-34
Identities = 82/187 (43%), Positives = 116/187 (62%), Gaps = 4/187 (2%)
Frame = +3
Query: 3 NRIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEM 182
+RIH+ FG D+H + ++DNA +LV R+R+A +++ + E+ D+ M
Sbjct: 425 DRIHSGFGNDVHTIYTDDNAEKLVFRLRIAGDDKGEG-----------QEEQVDK----M 469
Query: 183 EDEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQ----DNKIVIDSVTGSFTKENEW 350
ED D+FLR +E+ +L++LTL GIP I KV+M Q D K + + G F EW
Sbjct: 470 ED-----DVFLRCIEANMLADLTLQGIPSISKVYMNQPNTDDKKRTVITDEGGFKSITEW 524
Query: 351 LLETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVN 530
+LETDG + V+ + +D RT SNDI E FEVLGIEAVR + E+ VISFDG+YVN
Sbjct: 525 ILETDGTALLRVLAEQQIDPVRTTSNDICEIFEVLGIEAVRKAIEREMHNVISFDGSYVN 584
Query: 531 YRHLSVL 551
YRHL++L
Sbjct: 585 YRHLALL 591
[49][TOP]
>UniRef100_A9QME6 RNA polymerase 2 (Fragment) n=1 Tax=Pellioditis sp. JU274
RepID=A9QME6_9PELO
Length = 526
Score = 149 bits (375), Expect = 2e-34
Identities = 82/187 (43%), Positives = 120/187 (64%), Gaps = 4/187 (2%)
Frame = +3
Query: 3 NRIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEM 182
+++H+ FG DL+V+ ++DNA +LV R+R+ +++ + E E+ D+ M
Sbjct: 339 DKVHSGFGDDLNVIYTDDNADKLVFRLRITNQDDKSS----------ESEEQVDK----M 384
Query: 183 EDEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQ----DNKIVIDSVTGSFTKENEW 350
ED D+FLR +ES +LS LTL GI I KV+M + D K + + GSF + EW
Sbjct: 385 ED-----DVFLRCIESNMLSELTLQGIQQISKVYMHKPSTDDKKKIEIAPDGSFKSKAEW 439
Query: 351 LLETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVN 530
+LETDG+ + V+ +++D RT SNDI E FEVLGIEAVR ++ E+ VISFDG+YVN
Sbjct: 440 ILETDGIGLLRVLSEQNIDPVRTTSNDICEIFEVLGIEAVRKSIEREMNNVISFDGSYVN 499
Query: 531 YRHLSVL 551
YRHL++L
Sbjct: 500 YRHLALL 506
[50][TOP]
>UniRef100_Q6E227 RNA polymerase 2 (Fragment) n=1 Tax=Caenorhabditis japonica
RepID=Q6E227_CAEJA
Length = 608
Score = 148 bits (374), Expect = 2e-34
Identities = 86/187 (45%), Positives = 115/187 (61%), Gaps = 4/187 (2%)
Frame = +3
Query: 3 NRIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEM 182
+RIH FG D+H + ++DNA +LV R+R+A EDK + E+ D+ M
Sbjct: 425 DRIHGGFGSDVHTIYTDDNAEKLVFRLRIA--GEDKGADTQ--------EEQVDK----M 470
Query: 183 EDEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQ----DNKIVIDSVTGSFTKENEW 350
ED D+FLR +E+ +LS+LTL GIP I KV+M Q D K +I + G F +W
Sbjct: 471 ED-----DVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKKRIIITPEGGFKAVADW 525
Query: 351 LLETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVN 530
+LETDG + V+ +D RT SNDI E FEVLGIEAVR + E+ VISFDG+YVN
Sbjct: 526 ILETDGTALLRVLSERQIDPVRTSSNDICEIFEVLGIEAVRKAIEREMDNVISFDGSYVN 585
Query: 531 YRHLSVL 551
YRHL++L
Sbjct: 586 YRHLALL 592
[51][TOP]
>UniRef100_A9QMG0 DNA-directed RNA polymerase (Fragment) n=1 Tax=Oscheius tipulae
RepID=A9QMG0_OSCTI
Length = 629
Score = 148 bits (374), Expect = 2e-34
Identities = 84/187 (44%), Positives = 118/187 (63%), Gaps = 4/187 (2%)
Frame = +3
Query: 3 NRIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEM 182
++IHA FG DL+V+ ++DNA +LV R+R+ + +DK +E+ D+ M
Sbjct: 442 DKIHAGFGDDLNVIYTDDNAEKLVFRIRITNQGDDKLA----------EEEQIDK----M 487
Query: 183 EDEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQ----DNKIVIDSVTGSFTKENEW 350
ED D+FLR +ES +LS+LTL GI I KV+M + D K VI + G F ++W
Sbjct: 488 ED-----DMFLRCIESNMLSDLTLQGISSIAKVYMYKPNTDDKKKVIITPEGDFKHISDW 542
Query: 351 LLETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVN 530
+LETDG + V+ +D +T SNDI E FEVLGIEAVR ++ E+ VISFDG+YVN
Sbjct: 543 ILETDGTALLRVLSEPSIDPAKTTSNDICEIFEVLGIEAVRKSIEKEMNNVISFDGSYVN 602
Query: 531 YRHLSVL 551
YRHL++L
Sbjct: 603 YRHLALL 609
[52][TOP]
>UniRef100_A9QMF2 DNA-directed RNA polymerase (Fragment) n=1 Tax=Pelodera teres
RepID=A9QMF2_9PELO
Length = 629
Score = 148 bits (374), Expect = 2e-34
Identities = 88/187 (47%), Positives = 116/187 (62%), Gaps = 4/187 (2%)
Frame = +3
Query: 3 NRIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEM 182
+RIH FG DL+V+ ++DNA +LV R+R+ ++ DK E E+ D+ M
Sbjct: 438 DRIHQGFGDDLNVIYTDDNADKLVFRLRITNQDADKG----------ESEEQVDK----M 483
Query: 183 EDEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQ----DNKIVIDSVTGSFTKENEW 350
ED D+FLR +ES +LS+LTL GI I KV+M + D K +I + G F EW
Sbjct: 484 ED-----DVFLRCIESNMLSDLTLQGIEAISKVYMHKPTTDDKKRMIITEEGGFKAIPEW 538
Query: 351 LLETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVN 530
LLETDG + V+ + VD RT SNDI E FEVLGIEAVR + E+ VISFDG+YVN
Sbjct: 539 LLETDGTALLRVLSEQSVDPIRTSSNDICEIFEVLGIEAVRKGIEREMHQVISFDGSYVN 598
Query: 531 YRHLSVL 551
YRHL++L
Sbjct: 599 YRHLALL 605
[53][TOP]
>UniRef100_A9QMF1 RNA polymerase 2 (Fragment) n=1 Tax=Pelodera punctata
RepID=A9QMF1_9PELO
Length = 605
Score = 148 bits (374), Expect = 2e-34
Identities = 87/186 (46%), Positives = 115/186 (61%), Gaps = 4/186 (2%)
Frame = +3
Query: 6 RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
RIH FG DL+V+ ++DNA +LV R+R+ ++ DK E E+ D+ ME
Sbjct: 420 RIHQGFGDDLNVIYTDDNADKLVFRLRITNQDADKG----------ETEESVDK----ME 465
Query: 186 DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQ----DNKIVIDSVTGSFTKENEWL 353
D D+FLR +ES +LS+LTL GI I KV+M + D K ++ + G F EWL
Sbjct: 466 D-----DVFLRCIESNMLSDLTLQGIEAISKVYMHKPTTDDKKRMVITPEGGFKAIPEWL 520
Query: 354 LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
LETDG + V+ + VD RT SNDI E FEVLGIEAVR + E+ VISFDG+YVNY
Sbjct: 521 LETDGTALLRVLAEQSVDPVRTSSNDICEIFEVLGIEAVRKAIEREMHQVISFDGSYVNY 580
Query: 534 RHLSVL 551
RHL++L
Sbjct: 581 RHLALL 586
[54][TOP]
>UniRef100_A9QME9 RNA polymerase 2 (Fragment) n=1 Tax=Choriorhabditis cristata
RepID=A9QME9_9BILA
Length = 378
Score = 148 bits (374), Expect = 2e-34
Identities = 87/187 (46%), Positives = 119/187 (63%), Gaps = 4/187 (2%)
Frame = +3
Query: 3 NRIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEM 182
++IH FG DL+V+ ++DNA +LV R+R++ +++DKA +E+ D+ M
Sbjct: 192 DKIHQGFGDDLNVIYADDNADKLVFRLRISNQSDDKA-----------EEEQIDK----M 236
Query: 183 EDEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQ----DNKIVIDSVTGSFTKENEW 350
ED D+FLR +ES +LS+LTL GI I KV+M + D K VI + G F EW
Sbjct: 237 ED-----DVFLRCIESNMLSDLTLQGISSIAKVYMHKPTSDDKKKVIITGDGGFRAIPEW 291
Query: 351 LLETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVN 530
LLETDG + V+ + +D RT SNDI E FEVLGIEAVR + E+ VISFDG+YVN
Sbjct: 292 LLETDGTALLKVLSEQYIDPVRTSSNDICEIFEVLGIEAVRKAIEREMNNVISFDGSYVN 351
Query: 531 YRHLSVL 551
YRHL++L
Sbjct: 352 YRHLALL 358
[55][TOP]
>UniRef100_A9QME4 RNA polymerase 2 (Fragment) n=1 Tax=Oscheius tipulae
RepID=A9QME4_OSCTI
Length = 446
Score = 148 bits (374), Expect = 2e-34
Identities = 84/187 (44%), Positives = 118/187 (63%), Gaps = 4/187 (2%)
Frame = +3
Query: 3 NRIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEM 182
++IHA FG DL+V+ ++DNA +LV R+R+ + +DK +E+ D+ M
Sbjct: 264 DKIHAGFGDDLNVIYTDDNAEKLVFRIRITNQGDDKLA----------EEEQIDK----M 309
Query: 183 EDEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQ----DNKIVIDSVTGSFTKENEW 350
ED D+FLR +ES +LS+LTL GI I KV+M + D K VI + G F ++W
Sbjct: 310 ED-----DMFLRCIESNMLSDLTLQGISSIAKVYMYKPNTDDKKKVIITPEGDFKHISDW 364
Query: 351 LLETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVN 530
+LETDG + V+ +D +T SNDI E FEVLGIEAVR ++ E+ VISFDG+YVN
Sbjct: 365 ILETDGTALLRVLSEPSIDPAKTTSNDICEIFEVLGIEAVRKSIEKEMNNVISFDGSYVN 424
Query: 531 YRHLSVL 551
YRHL++L
Sbjct: 425 YRHLALL 431
[56][TOP]
>UniRef100_A9QME3 RNA polymerase 2 (Fragment) n=1 Tax=Oscheius insectivora
RepID=A9QME3_9BILA
Length = 246
Score = 148 bits (374), Expect = 2e-34
Identities = 86/187 (45%), Positives = 117/187 (62%), Gaps = 4/187 (2%)
Frame = +3
Query: 3 NRIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEM 182
++IH+ FG DL+V+ ++DNA +LV R+R+ + DKA DE+ D+ M
Sbjct: 59 DKIHSGFGDDLNVIYTDDNADKLVFRIRITNNDGDKA-----------DEEQIDK----M 103
Query: 183 EDEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQ----DNKIVIDSVTGSFTKENEW 350
ED D+FLR +ES +LS+LTL GI I KV+M + D K VI + G F +W
Sbjct: 104 ED-----DMFLRCIESNMLSDLTLQGISSISKVYMHKPQTDDKKRVIITPDGDFKAIADW 158
Query: 351 LLETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVN 530
+LETDG + V+ +D RT SNDI E FEVLGIEAVR ++ E+ VISFDG+YVN
Sbjct: 159 ILETDGTALLRVLSEPMIDPVRTTSNDICEIFEVLGIEAVRKSIEREMHNVISFDGSYVN 218
Query: 531 YRHLSVL 551
YRHL++L
Sbjct: 219 YRHLALL 225
[57][TOP]
>UniRef100_A9QMG9 DNA-directed RNA polymerase (Fragment) n=1 Tax=Poikilolaimus
regenfussi RepID=A9QMG9_9BILA
Length = 620
Score = 148 bits (373), Expect = 3e-34
Identities = 89/187 (47%), Positives = 114/187 (60%), Gaps = 4/187 (2%)
Frame = +3
Query: 3 NRIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEM 182
+RIHA FGGDL+V+ ++DNA +LV R+R+A + DK E E+ D+ M
Sbjct: 434 DRIHAGFGGDLNVIYTDDNAEKLVFRLRIANADNDKG----------ESEEQVDK----M 479
Query: 183 EDEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMR----QDNKIVIDSVTGSFTKENEW 350
E+ D+FL VES +LS+LTL GI I KV M D K I + GSF EW
Sbjct: 480 EB-----DVFLXCVESNMLSDLTLZGIZSIAKVCMHXPTTDDKKRTIXTADGSFKSIPEW 534
Query: 351 LLETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVN 530
LL TDG + V+ ++V RT SNDI E FEVLGIEAVR + E+ VISFDG+YVN
Sbjct: 535 LLXTDGTALLKVLSEQNVHPIRTTSNDICEIFEVLGIEAVRKAIEREMNHVISFDGSYVN 594
Query: 531 YRHLSVL 551
YRHL++L
Sbjct: 595 YRHLALL 601
[58][TOP]
>UniRef100_A9QME0 DNA-directed RNA polymerase (Fragment) n=1 Tax=Pellioditis typica
RepID=A9QME0_9PELO
Length = 633
Score = 148 bits (373), Expect = 3e-34
Identities = 88/187 (47%), Positives = 117/187 (62%), Gaps = 4/187 (2%)
Frame = +3
Query: 3 NRIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEM 182
++IHA FG DL+V+ ++DNA +LV R+R+ N+D G DE+ D+ M
Sbjct: 438 DKIHAGFGDDLNVIYTDDNADKLVFRLRIT--NQDDKGT---------DEEQIDK----M 482
Query: 183 EDEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQ----DNKIVIDSVTGSFTKENEW 350
ED D+FLR +ES +LS LTL GI I KV+M + D K VI + G F +W
Sbjct: 483 ED-----DVFLRCIESNMLSELTLQGITSISKVYMHKPMTDDKKRVIITPEGGFKAIADW 537
Query: 351 LLETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVN 530
LLETDG + V+ + +D RT SNDI E FEVLGIEAVR ++ E+ VISFDG+YVN
Sbjct: 538 LLETDGTALLKVLSEQHIDPIRTTSNDICEIFEVLGIEAVRKSIEREMNNVISFDGSYVN 597
Query: 531 YRHLSVL 551
YRHL++L
Sbjct: 598 YRHLALL 604
[59][TOP]
>UniRef100_A9QMQ4 RNA polymerase 2 (Fragment) n=1 Tax=Choriorhabditis dudichi
RepID=A9QMQ4_9BILA
Length = 380
Score = 147 bits (372), Expect = 4e-34
Identities = 87/187 (46%), Positives = 118/187 (63%), Gaps = 4/187 (2%)
Frame = +3
Query: 3 NRIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEM 182
++IH FG DL+V+ ++DNA +LV R+R++ + +DKA +E+ D+ M
Sbjct: 201 DKIHQGFGDDLNVIYADDNAEKLVFRLRISNQADDKA-----------EEEQIDK----M 245
Query: 183 EDEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQ----DNKIVIDSVTGSFTKENEW 350
ED D+FLR +ES +LS+LTL GI I KV+M + D K VI + G F EW
Sbjct: 246 ED-----DVFLRCIESNMLSDLTLQGINSIAKVYMHKPTSDDKKKVIITPEGGFKAIPEW 300
Query: 351 LLETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVN 530
LLETDG + V+ + +D RT SNDI E FEVLGIEAVR + E+ VISFDG+YVN
Sbjct: 301 LLETDGTALLKVLSEQYIDPVRTSSNDICEIFEVLGIEAVRKAIEREMNNVISFDGSYVN 360
Query: 531 YRHLSVL 551
YRHL++L
Sbjct: 361 YRHLALL 367
[60][TOP]
>UniRef100_A9QMF3 DNA-directed RNA polymerase (Fragment) n=1 Tax=Rhabditoides regina
RepID=A9QMF3_9BILA
Length = 626
Score = 147 bits (372), Expect = 4e-34
Identities = 88/187 (47%), Positives = 116/187 (62%), Gaps = 4/187 (2%)
Frame = +3
Query: 3 NRIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEM 182
+RIH FG DL+V+ ++DNA +LV R+R+ ++EDK E E+ D+ M
Sbjct: 438 DRIHQGFGDDLNVIYTDDNADKLVFRLRITNQSEDKG----------ETEEQVDK----M 483
Query: 183 EDEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQ----DNKIVIDSVTGSFTKENEW 350
ED D+FLR +ES +LS+LTL GI I KV+M + D K ++ + G F EW
Sbjct: 484 ED-----DVFLRCIESNMLSDLTLQGIEAIAKVYMHKPTTDDKKRMVITPEGGFKAIPEW 538
Query: 351 LLETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVN 530
LLETDG + V+ VD RT SNDI E FEVLGIEAVR + E+ VISFDG+YVN
Sbjct: 539 LLETDGTALLRVLAESAVDPIRTSSNDICEIFEVLGIEAVRKGIEREMHQVISFDGSYVN 598
Query: 531 YRHLSVL 551
YRHL++L
Sbjct: 599 YRHLALL 605
[61][TOP]
>UniRef100_B4E3V7 DNA-directed RNA polymerase n=1 Tax=Homo sapiens RepID=B4E3V7_HUMAN
Length = 1935
Score = 147 bits (372), Expect = 4e-34
Identities = 84/186 (45%), Positives = 118/186 (63%), Gaps = 4/186 (2%)
Frame = +3
Query: 6 RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
+I+A FG DL+ + ++DNA +LV+R+R+ +E+K Q+ + V +M+
Sbjct: 1199 KINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKM-------------QEEEEVVDKMD 1245
Query: 186 DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMR----QDNKIVIDSVTGSFTKENEWL 353
D D+FLR +ES +L+++TL GI I KV+M + K +I + G F EW+
Sbjct: 1246 D-----DVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWI 1300
Query: 354 LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
LETDGV+ I V+ +DVD RT SNDIVE F VLGIEAVR L E+ VISFDG+YVNY
Sbjct: 1301 LETDGVSLIRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNY 1360
Query: 534 RHLSVL 551
RHL++L
Sbjct: 1361 RHLALL 1366
[62][TOP]
>UniRef100_Q6GYH6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Prodontorhabditis
wirthi RepID=Q6GYH6_9BILA
Length = 630
Score = 147 bits (371), Expect = 5e-34
Identities = 83/189 (43%), Positives = 114/189 (60%), Gaps = 6/189 (3%)
Frame = +3
Query: 3 NRIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEM 182
N+IHA FG DL+V+ ++DNA +LV+R+R+A ++DK + + + ED
Sbjct: 444 NKIHAGFGDDLNVIYTDDNAEKLVLRLRIAGGSDDKGDVGEEQVDKMED----------- 492
Query: 183 EDEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQDNKIVIDSVTGSFTKEN------ 344
D FLR +E+ +LS+L+L GIP I KV+M + N D T+E
Sbjct: 493 -------DTFLRCIEANMLSDLSLLGIPAIGKVYMHKPN--TDDKKRFXITREGGSKAIA 543
Query: 345 EWLLETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAY 524
+WLLETDG + V+ D+D RT SNDI E FEVLGIEAVR + E+ VISFDG+Y
Sbjct: 544 DWLLETDGTALLKVLSERDIDQIRTSSNDICEIFEVLGIEAVRKAIEREMHNVISFDGSY 603
Query: 525 VNYRHLSVL 551
VNYRHL++L
Sbjct: 604 VNYRHLALL 612
[63][TOP]
>UniRef100_A9QMF0 DNA-directed RNA polymerase (Fragment) n=1 Tax=Pelodera
strongyloides dermatitica RepID=A9QMF0_9PELO
Length = 633
Score = 147 bits (371), Expect = 5e-34
Identities = 87/186 (46%), Positives = 115/186 (61%), Gaps = 4/186 (2%)
Frame = +3
Query: 6 RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
RIH FG DL+V+ ++DNA +LV R+R+ ++ DK E E+ D+ ME
Sbjct: 444 RIHQGFGDDLNVIYTDDNADKLVFRLRITNQDMDKG----------ESEESVDK----ME 489
Query: 186 DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQ----DNKIVIDSVTGSFTKENEWL 353
D D+FLR +ES +LS+LTL GI I KV+M + D K ++ + G F EWL
Sbjct: 490 D-----DVFLRCIESNMLSDLTLQGIEAITKVYMHKPTTDDKKRMVITPEGGFKAIPEWL 544
Query: 354 LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
LETDG + V+ + VD RT SNDI E FEVLGIEAVR + E+ VISFDG+YVNY
Sbjct: 545 LETDGTALLRVLAEQSVDPVRTSSNDICEIFEVLGIEAVRKGIEREMHQVISFDGSYVNY 604
Query: 534 RHLSVL 551
RHL++L
Sbjct: 605 RHLALL 610
[64][TOP]
>UniRef100_P90678 DNA-directed RNA polymerase (Fragment) n=1 Tax=Aduncospiculum
halicti RepID=P90678_9BILA
Length = 631
Score = 147 bits (370), Expect = 7e-34
Identities = 86/187 (45%), Positives = 118/187 (63%), Gaps = 4/187 (2%)
Frame = +3
Query: 3 NRIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEM 182
++IH FG DL+V+ ++DNA +LV R+R+ N+DK G +E+ D+ M
Sbjct: 438 DKIHHGFGDDLNVIYTDDNADKLVFRLRIT--NQDKGG----------EEEQVDK----M 481
Query: 183 EDEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQ----DNKIVIDSVTGSFTKENEW 350
ED D+FLR +E+ +LS+LTL GI I KV+M + D K I + GSF EW
Sbjct: 482 ED-----DMFLRCIEANMLSDLTLQGIEAISKVYMHKPTTDDKKKTIVTPDGSFKAIPEW 536
Query: 351 LLETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVN 530
+LETDG + V+ ++VD RT SNDI E FE+LGIEAVR + E+ VISFDG+YVN
Sbjct: 537 ILETDGTALLKVLSEQNVDQHRTYSNDICEIFEILGIEAVRKAIEREMHQVISFDGSYVN 596
Query: 531 YRHLSVL 551
YRHL++L
Sbjct: 597 YRHLALL 603
[65][TOP]
>UniRef100_A9QMQ9 DNA-directed RNA polymerase (Fragment) n=1 Tax=Caenorhabditis sp.
JU727 RepID=A9QMQ9_9PELO
Length = 620
Score = 147 bits (370), Expect = 7e-34
Identities = 83/187 (44%), Positives = 116/187 (62%), Gaps = 4/187 (2%)
Frame = +3
Query: 3 NRIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEM 182
+RIH FG D+H + ++DNA +LV R+R++ +++ G E+ D+ M
Sbjct: 442 DRIHGGFGTDVHTIYTDDNAEKLVFRLRISGDDKGDGG----------QEEQVDK----M 487
Query: 183 EDEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQ----DNKIVIDSVTGSFTKENEW 350
ED D+FLR +E+ +LS+LTL GIP I KV+M Q D K +I + G F +W
Sbjct: 488 ED-----DVFLRCIEANMLSDLTLQGIPQISKVYMSQPNTDDKKRIIITPEGGFKAVADW 542
Query: 351 LLETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVN 530
+LETDG + V+ +D RT SNDI E FEVLGIEAVR ++ E+ VISFDG+YVN
Sbjct: 543 ILETDGTALLRVLSERQIDPIRTTSNDICEIFEVLGIEAVRKSIEKEMDNVISFDGSYVN 602
Query: 531 YRHLSVL 551
YRHL++L
Sbjct: 603 YRHLALL 609
[66][TOP]
>UniRef100_UPI0001796DD3 PREDICTED: similar to DNA-directed RNA polymerase II subunit RPB1
(RNA polymerase II subunit B1) (DNA-directed RNA
polymerase II subunit A) (DNA-directed RNA polymerase III
largest subunit) n=1 Tax=Equus caballus
RepID=UPI0001796DD3
Length = 1834
Score = 146 bits (369), Expect = 9e-34
Identities = 83/186 (44%), Positives = 118/186 (63%), Gaps = 4/186 (2%)
Frame = +3
Query: 6 RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
+I+A FG DL+ + ++DNA +LV+R+R+ +E+K Q+ + V +M+
Sbjct: 1234 KINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKM-------------QEEEEVVDKMD 1280
Query: 186 DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMR----QDNKIVIDSVTGSFTKENEWL 353
D D+FLR +ES +L+++TL GI I KV+M + K +I + G F EW+
Sbjct: 1281 D-----DVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWI 1335
Query: 354 LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
LETDGV+ + V+ +DVD RT SNDIVE F VLGIEAVR L E+ VISFDG+YVNY
Sbjct: 1336 LETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNY 1395
Query: 534 RHLSVL 551
RHL++L
Sbjct: 1396 RHLALL 1401
[67][TOP]
>UniRef100_UPI0000F2BF13 PREDICTED: similar to RNA polymerase II isoform 2 n=1 Tax=Monodelphis
domestica RepID=UPI0000F2BF13
Length = 1932
Score = 146 bits (369), Expect = 9e-34
Identities = 83/186 (44%), Positives = 118/186 (63%), Gaps = 4/186 (2%)
Frame = +3
Query: 6 RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
+I+A FG DL+ + ++DNA +LV+R+R+ +E+K Q+ + V +M+
Sbjct: 1234 KINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKM-------------QEEEEVVDKMD 1280
Query: 186 DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMR----QDNKIVIDSVTGSFTKENEWL 353
D D+FLR +ES +L+++TL GI I KV+M + K +I + G F EW+
Sbjct: 1281 D-----DVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWI 1335
Query: 354 LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
LETDGV+ + V+ +DVD RT SNDIVE F VLGIEAVR L E+ VISFDG+YVNY
Sbjct: 1336 LETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNY 1395
Query: 534 RHLSVL 551
RHL++L
Sbjct: 1396 RHLALL 1401
[68][TOP]
>UniRef100_UPI0000F2BF12 PREDICTED: similar to RNA polymerase II isoform 1 n=1 Tax=Monodelphis
domestica RepID=UPI0000F2BF12
Length = 1970
Score = 146 bits (369), Expect = 9e-34
Identities = 83/186 (44%), Positives = 118/186 (63%), Gaps = 4/186 (2%)
Frame = +3
Query: 6 RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
+I+A FG DL+ + ++DNA +LV+R+R+ +E+K Q+ + V +M+
Sbjct: 1234 KINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKM-------------QEEEEVVDKMD 1280
Query: 186 DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMR----QDNKIVIDSVTGSFTKENEWL 353
D D+FLR +ES +L+++TL GI I KV+M + K +I + G F EW+
Sbjct: 1281 D-----DVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWI 1335
Query: 354 LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
LETDGV+ + V+ +DVD RT SNDIVE F VLGIEAVR L E+ VISFDG+YVNY
Sbjct: 1336 LETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNY 1395
Query: 534 RHLSVL 551
RHL++L
Sbjct: 1396 RHLALL 1401
[69][TOP]
>UniRef100_UPI0000EBDCD2 PREDICTED: polymerase (RNA) II (DNA directed) polypeptide A, 220kDa
isoform 4 n=1 Tax=Bos taurus RepID=UPI0000EBDCD2
Length = 1970
Score = 146 bits (369), Expect = 9e-34
Identities = 83/186 (44%), Positives = 118/186 (63%), Gaps = 4/186 (2%)
Frame = +3
Query: 6 RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
+I+A FG DL+ + ++DNA +LV+R+R+ +E+K Q+ + V +M+
Sbjct: 1234 KINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKM-------------QEEEEVVDKMD 1280
Query: 186 DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMR----QDNKIVIDSVTGSFTKENEWL 353
D D+FLR +ES +L+++TL GI I KV+M + K +I + G F EW+
Sbjct: 1281 D-----DVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWI 1335
Query: 354 LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
LETDGV+ + V+ +DVD RT SNDIVE F VLGIEAVR L E+ VISFDG+YVNY
Sbjct: 1336 LETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNY 1395
Query: 534 RHLSVL 551
RHL++L
Sbjct: 1396 RHLALL 1401
[70][TOP]
>UniRef100_UPI00005A0B2C PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
(RPB1) isoform 23 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B2C
Length = 1888
Score = 146 bits (369), Expect = 9e-34
Identities = 83/186 (44%), Positives = 118/186 (63%), Gaps = 4/186 (2%)
Frame = +3
Query: 6 RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
+I+A FG DL+ + ++DNA +LV+R+R+ +E+K Q+ + V +M+
Sbjct: 1234 KINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKM-------------QEEEEVVDKMD 1280
Query: 186 DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMR----QDNKIVIDSVTGSFTKENEWL 353
D D+FLR +ES +L+++TL GI I KV+M + K +I + G F EW+
Sbjct: 1281 D-----DVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWI 1335
Query: 354 LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
LETDGV+ + V+ +DVD RT SNDIVE F VLGIEAVR L E+ VISFDG+YVNY
Sbjct: 1336 LETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNY 1395
Query: 534 RHLSVL 551
RHL++L
Sbjct: 1396 RHLALL 1401
[71][TOP]
>UniRef100_UPI00005A0B29 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
(RPB1) isoform 20 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B29
Length = 1891
Score = 146 bits (369), Expect = 9e-34
Identities = 83/186 (44%), Positives = 118/186 (63%), Gaps = 4/186 (2%)
Frame = +3
Query: 6 RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
+I+A FG DL+ + ++DNA +LV+R+R+ +E+K Q+ + V +M+
Sbjct: 1203 KINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKM-------------QEEEEVVDKMD 1249
Query: 186 DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMR----QDNKIVIDSVTGSFTKENEWL 353
D D+FLR +ES +L+++TL GI I KV+M + K +I + G F EW+
Sbjct: 1250 D-----DVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWI 1304
Query: 354 LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
LETDGV+ + V+ +DVD RT SNDIVE F VLGIEAVR L E+ VISFDG+YVNY
Sbjct: 1305 LETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNY 1364
Query: 534 RHLSVL 551
RHL++L
Sbjct: 1365 RHLALL 1370
[72][TOP]
>UniRef100_UPI00005A0B28 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
(RPB1) isoform 19 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B28
Length = 1908
Score = 146 bits (369), Expect = 9e-34
Identities = 83/186 (44%), Positives = 118/186 (63%), Gaps = 4/186 (2%)
Frame = +3
Query: 6 RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
+I+A FG DL+ + ++DNA +LV+R+R+ +E+K Q+ + V +M+
Sbjct: 1220 KINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKM-------------QEEEEVVDKMD 1266
Query: 186 DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMR----QDNKIVIDSVTGSFTKENEWL 353
D D+FLR +ES +L+++TL GI I KV+M + K +I + G F EW+
Sbjct: 1267 D-----DVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWI 1321
Query: 354 LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
LETDGV+ + V+ +DVD RT SNDIVE F VLGIEAVR L E+ VISFDG+YVNY
Sbjct: 1322 LETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNY 1381
Query: 534 RHLSVL 551
RHL++L
Sbjct: 1382 RHLALL 1387
[73][TOP]
>UniRef100_UPI00005A0B26 PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide
A isoform 17 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B26
Length = 1684
Score = 146 bits (369), Expect = 9e-34
Identities = 83/186 (44%), Positives = 118/186 (63%), Gaps = 4/186 (2%)
Frame = +3
Query: 6 RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
+I+A FG DL+ + ++DNA +LV+R+R+ +E+K Q+ + V +M+
Sbjct: 1224 KINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKM-------------QEEEEVVDKMD 1270
Query: 186 DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMR----QDNKIVIDSVTGSFTKENEWL 353
D D+FLR +ES +L+++TL GI I KV+M + K +I + G F EW+
Sbjct: 1271 D-----DVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWI 1325
Query: 354 LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
LETDGV+ + V+ +DVD RT SNDIVE F VLGIEAVR L E+ VISFDG+YVNY
Sbjct: 1326 LETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNY 1385
Query: 534 RHLSVL 551
RHL++L
Sbjct: 1386 RHLALL 1391
[74][TOP]
>UniRef100_UPI00005A0B25 PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide
A isoform 16 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B25
Length = 1752
Score = 146 bits (369), Expect = 9e-34
Identities = 83/186 (44%), Positives = 118/186 (63%), Gaps = 4/186 (2%)
Frame = +3
Query: 6 RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
+I+A FG DL+ + ++DNA +LV+R+R+ +E+K Q+ + V +M+
Sbjct: 1224 KINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKM-------------QEEEEVVDKMD 1270
Query: 186 DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMR----QDNKIVIDSVTGSFTKENEWL 353
D D+FLR +ES +L+++TL GI I KV+M + K +I + G F EW+
Sbjct: 1271 D-----DVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWI 1325
Query: 354 LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
LETDGV+ + V+ +DVD RT SNDIVE F VLGIEAVR L E+ VISFDG+YVNY
Sbjct: 1326 LETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNY 1385
Query: 534 RHLSVL 551
RHL++L
Sbjct: 1386 RHLALL 1391
[75][TOP]
>UniRef100_UPI00005A0B24 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
(RPB1) isoform 15 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B24
Length = 1924
Score = 146 bits (369), Expect = 9e-34
Identities = 83/186 (44%), Positives = 118/186 (63%), Gaps = 4/186 (2%)
Frame = +3
Query: 6 RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
+I+A FG DL+ + ++DNA +LV+R+R+ +E+K Q+ + V +M+
Sbjct: 1236 KINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKM-------------QEEEEVVDKMD 1282
Query: 186 DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMR----QDNKIVIDSVTGSFTKENEWL 353
D D+FLR +ES +L+++TL GI I KV+M + K +I + G F EW+
Sbjct: 1283 D-----DVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWI 1337
Query: 354 LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
LETDGV+ + V+ +DVD RT SNDIVE F VLGIEAVR L E+ VISFDG+YVNY
Sbjct: 1338 LETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNY 1397
Query: 534 RHLSVL 551
RHL++L
Sbjct: 1398 RHLALL 1403
[76][TOP]
>UniRef100_UPI00005A0B21 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
(RPB1) isoform 12 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B21
Length = 1922
Score = 146 bits (369), Expect = 9e-34
Identities = 83/186 (44%), Positives = 118/186 (63%), Gaps = 4/186 (2%)
Frame = +3
Query: 6 RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
+I+A FG DL+ + ++DNA +LV+R+R+ +E+K Q+ + V +M+
Sbjct: 1234 KINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKM-------------QEEEEVVDKMD 1280
Query: 186 DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMR----QDNKIVIDSVTGSFTKENEWL 353
D D+FLR +ES +L+++TL GI I KV+M + K +I + G F EW+
Sbjct: 1281 D-----DVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWI 1335
Query: 354 LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
LETDGV+ + V+ +DVD RT SNDIVE F VLGIEAVR L E+ VISFDG+YVNY
Sbjct: 1336 LETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNY 1395
Query: 534 RHLSVL 551
RHL++L
Sbjct: 1396 RHLALL 1401
[77][TOP]
>UniRef100_UPI00005A0B20 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
(RPB1) isoform 11 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B20
Length = 1923
Score = 146 bits (369), Expect = 9e-34
Identities = 83/186 (44%), Positives = 118/186 (63%), Gaps = 4/186 (2%)
Frame = +3
Query: 6 RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
+I+A FG DL+ + ++DNA +LV+R+R+ +E+K Q+ + V +M+
Sbjct: 1235 KINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKM-------------QEEEEVVDKMD 1281
Query: 186 DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMR----QDNKIVIDSVTGSFTKENEWL 353
D D+FLR +ES +L+++TL GI I KV+M + K +I + G F EW+
Sbjct: 1282 D-----DVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWI 1336
Query: 354 LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
LETDGV+ + V+ +DVD RT SNDIVE F VLGIEAVR L E+ VISFDG+YVNY
Sbjct: 1337 LETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNY 1396
Query: 534 RHLSVL 551
RHL++L
Sbjct: 1397 RHLALL 1402
[78][TOP]
>UniRef100_UPI00005A0B17 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
(RPB1) isoform 3 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B17
Length = 1788
Score = 146 bits (369), Expect = 9e-34
Identities = 83/186 (44%), Positives = 118/186 (63%), Gaps = 4/186 (2%)
Frame = +3
Query: 6 RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
+I+A FG DL+ + ++DNA +LV+R+R+ +E+K Q+ + V +M+
Sbjct: 1234 KINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKM-------------QEEEEVVDKMD 1280
Query: 186 DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMR----QDNKIVIDSVTGSFTKENEWL 353
D D+FLR +ES +L+++TL GI I KV+M + K +I + G F EW+
Sbjct: 1281 D-----DVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWI 1335
Query: 354 LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
LETDGV+ + V+ +DVD RT SNDIVE F VLGIEAVR L E+ VISFDG+YVNY
Sbjct: 1336 LETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNY 1395
Query: 534 RHLSVL 551
RHL++L
Sbjct: 1396 RHLALL 1401
[79][TOP]
>UniRef100_UPI00005A0B16 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
(RPB1) isoform 2 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B16
Length = 1922
Score = 146 bits (369), Expect = 9e-34
Identities = 83/186 (44%), Positives = 118/186 (63%), Gaps = 4/186 (2%)
Frame = +3
Query: 6 RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
+I+A FG DL+ + ++DNA +LV+R+R+ +E+K Q+ + V +M+
Sbjct: 1234 KINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKM-------------QEEEEVVDKMD 1280
Query: 186 DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMR----QDNKIVIDSVTGSFTKENEWL 353
D D+FLR +ES +L+++TL GI I KV+M + K +I + G F EW+
Sbjct: 1281 D-----DVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWI 1335
Query: 354 LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
LETDGV+ + V+ +DVD RT SNDIVE F VLGIEAVR L E+ VISFDG+YVNY
Sbjct: 1336 LETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNY 1395
Query: 534 RHLSVL 551
RHL++L
Sbjct: 1396 RHLALL 1401
[80][TOP]
>UniRef100_UPI0001B7A25C UPI0001B7A25C related cluster n=1 Tax=Rattus norvegicus
RepID=UPI0001B7A25C
Length = 1968
Score = 146 bits (369), Expect = 9e-34
Identities = 83/186 (44%), Positives = 118/186 (63%), Gaps = 4/186 (2%)
Frame = +3
Query: 6 RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
+I+A FG DL+ + ++DNA +LV+R+R+ +E+K Q+ + V +M+
Sbjct: 1236 KINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKM-------------QEEEEVVDKMD 1282
Query: 186 DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMR----QDNKIVIDSVTGSFTKENEWL 353
D D+FLR +ES +L+++TL GI I KV+M + K +I + G F EW+
Sbjct: 1283 D-----DVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWI 1337
Query: 354 LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
LETDGV+ + V+ +DVD RT SNDIVE F VLGIEAVR L E+ VISFDG+YVNY
Sbjct: 1338 LETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNY 1397
Query: 534 RHLSVL 551
RHL++L
Sbjct: 1398 RHLALL 1403
[81][TOP]
>UniRef100_UPI0001B7A25B UPI0001B7A25B related cluster n=1 Tax=Rattus norvegicus
RepID=UPI0001B7A25B
Length = 1932
Score = 146 bits (369), Expect = 9e-34
Identities = 83/186 (44%), Positives = 118/186 (63%), Gaps = 4/186 (2%)
Frame = +3
Query: 6 RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
+I+A FG DL+ + ++DNA +LV+R+R+ +E+K Q+ + V +M+
Sbjct: 1234 KINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKM-------------QEEEEVVDKMD 1280
Query: 186 DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMR----QDNKIVIDSVTGSFTKENEWL 353
D D+FLR +ES +L+++TL GI I KV+M + K +I + G F EW+
Sbjct: 1281 D-----DVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWI 1335
Query: 354 LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
LETDGV+ + V+ +DVD RT SNDIVE F VLGIEAVR L E+ VISFDG+YVNY
Sbjct: 1336 LETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNY 1395
Query: 534 RHLSVL 551
RHL++L
Sbjct: 1396 RHLALL 1401
[82][TOP]
>UniRef100_UPI0000DA33D8 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
(RPB1) n=1 Tax=Rattus norvegicus RepID=UPI0000DA33D8
Length = 1970
Score = 146 bits (369), Expect = 9e-34
Identities = 83/186 (44%), Positives = 118/186 (63%), Gaps = 4/186 (2%)
Frame = +3
Query: 6 RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
+I+A FG DL+ + ++DNA +LV+R+R+ +E+K Q+ + V +M+
Sbjct: 1234 KINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKM-------------QEEEEVVDKMD 1280
Query: 186 DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMR----QDNKIVIDSVTGSFTKENEWL 353
D D+FLR +ES +L+++TL GI I KV+M + K +I + G F EW+
Sbjct: 1281 D-----DVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWI 1335
Query: 354 LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
LETDGV+ + V+ +DVD RT SNDIVE F VLGIEAVR L E+ VISFDG+YVNY
Sbjct: 1336 LETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNY 1395
Query: 534 RHLSVL 551
RHL++L
Sbjct: 1396 RHLALL 1401
[83][TOP]
>UniRef100_UPI0001951285 220 kDa DNA-directed RNA polymerase polypeptide A n=1 Tax=Canis lupus
familiaris RepID=UPI0001951285
Length = 1969
Score = 146 bits (369), Expect = 9e-34
Identities = 83/186 (44%), Positives = 118/186 (63%), Gaps = 4/186 (2%)
Frame = +3
Query: 6 RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
+I+A FG DL+ + ++DNA +LV+R+R+ +E+K Q+ + V +M+
Sbjct: 1234 KINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKM-------------QEEEEVVDKMD 1280
Query: 186 DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMR----QDNKIVIDSVTGSFTKENEWL 353
D D+FLR +ES +L+++TL GI I KV+M + K +I + G F EW+
Sbjct: 1281 D-----DVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWI 1335
Query: 354 LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
LETDGV+ + V+ +DVD RT SNDIVE F VLGIEAVR L E+ VISFDG+YVNY
Sbjct: 1336 LETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNY 1395
Query: 534 RHLSVL 551
RHL++L
Sbjct: 1396 RHLALL 1401
[84][TOP]
>UniRef100_O35559 DNA-directed RNA polymerase n=1 Tax=Cricetulus griseus
RepID=O35559_CRIGR
Length = 1970
Score = 146 bits (369), Expect = 9e-34
Identities = 83/186 (44%), Positives = 118/186 (63%), Gaps = 4/186 (2%)
Frame = +3
Query: 6 RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
+I+A FG DL+ + ++DNA +LV+R+R+ +E+K Q+ + V +M+
Sbjct: 1234 KINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKM-------------QEEEEVVDKMD 1280
Query: 186 DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMR----QDNKIVIDSVTGSFTKENEWL 353
D D+FLR +ES +L+++TL GI I KV+M + K +I + G F EW+
Sbjct: 1281 D-----DVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWI 1335
Query: 354 LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
LETDGV+ + V+ +DVD RT SNDIVE F VLGIEAVR L E+ VISFDG+YVNY
Sbjct: 1336 LETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNY 1395
Query: 534 RHLSVL 551
RHL++L
Sbjct: 1396 RHLALL 1401
[85][TOP]
>UniRef100_O08847 DNA-directed RNA polymerase n=1 Tax=Mus musculus RepID=O08847_MOUSE
Length = 1966
Score = 146 bits (369), Expect = 9e-34
Identities = 83/186 (44%), Positives = 118/186 (63%), Gaps = 4/186 (2%)
Frame = +3
Query: 6 RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
+I+A FG DL+ + ++DNA +LV+R+R+ +E+K Q+ + V +M+
Sbjct: 1234 KINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKM-------------QEEEEVVDKMD 1280
Query: 186 DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMR----QDNKIVIDSVTGSFTKENEWL 353
D D+FLR +ES +L+++TL GI I KV+M + K +I + G F EW+
Sbjct: 1281 D-----DVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWI 1335
Query: 354 LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
LETDGV+ + V+ +DVD RT SNDIVE F VLGIEAVR L E+ VISFDG+YVNY
Sbjct: 1336 LETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNY 1395
Query: 534 RHLSVL 551
RHL++L
Sbjct: 1396 RHLALL 1401
[86][TOP]
>UniRef100_A8PU11 DNA-directed RNA polymerase n=1 Tax=Brugia malayi RepID=A8PU11_BRUMA
Length = 1943
Score = 146 bits (369), Expect = 9e-34
Identities = 87/187 (46%), Positives = 114/187 (60%), Gaps = 4/187 (2%)
Frame = +3
Query: 3 NRIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEM 182
++IH FG DL+V+ ++DNA +LV R+R+ + DK EDEQ M
Sbjct: 1298 DKIHQGFGDDLNVIYTDDNAEKLVFRLRITNQEGDKGN---------EDEQ-----VERM 1343
Query: 183 EDEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQ----DNKIVIDSVTGSFTKENEW 350
ED D+FLR +E+ +LS+LTL GI I KV+M + D K V+ + G F EW
Sbjct: 1344 ED-----DVFLRCIETNMLSDLTLQGIEAITKVYMHKPTTDDKKRVVITPDGGFKAIPEW 1398
Query: 351 LLETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVN 530
LLETDG V+ ++VD RT SNDI E FEVLGIEAVR + E+ VISFDG+YVN
Sbjct: 1399 LLETDGTALAKVLSEQNVDPIRTTSNDICEIFEVLGIEAVRKAIEREMNHVISFDGSYVN 1458
Query: 531 YRHLSVL 551
YRHL++L
Sbjct: 1459 YRHLALL 1465
[87][TOP]
>UniRef100_B4DET1 cDNA FLJ53860, highly similar to DNA-directed RNA polymerase II
largest subunit (EC 2.7.7.6) n=1 Tax=Homo sapiens
RepID=B4DET1_HUMAN
Length = 855
Score = 146 bits (369), Expect = 9e-34
Identities = 83/186 (44%), Positives = 118/186 (63%), Gaps = 4/186 (2%)
Frame = +3
Query: 6 RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
+I+A FG DL+ + ++DNA +LV+R+R+ +E+K Q+ + V +M+
Sbjct: 133 KINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKM-------------QEEEEVVDKMD 179
Query: 186 DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMR----QDNKIVIDSVTGSFTKENEWL 353
D D+FLR +ES +L+++TL GI I KV+M + K +I + G F EW+
Sbjct: 180 D-----DVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWI 234
Query: 354 LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
LETDGV+ + V+ +DVD RT SNDIVE F VLGIEAVR L E+ VISFDG+YVNY
Sbjct: 235 LETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNY 294
Query: 534 RHLSVL 551
RHL++L
Sbjct: 295 RHLALL 300
[88][TOP]
>UniRef100_A6NN93 DNA-directed RNA polymerase n=1 Tax=Homo sapiens RepID=A6NN93_HUMAN
Length = 1970
Score = 146 bits (369), Expect = 9e-34
Identities = 83/186 (44%), Positives = 118/186 (63%), Gaps = 4/186 (2%)
Frame = +3
Query: 6 RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
+I+A FG DL+ + ++DNA +LV+R+R+ +E+K Q+ + V +M+
Sbjct: 1234 KINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKM-------------QEEEEVVDKMD 1280
Query: 186 DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMR----QDNKIVIDSVTGSFTKENEWL 353
D D+FLR +ES +L+++TL GI I KV+M + K +I + G F EW+
Sbjct: 1281 D-----DVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWI 1335
Query: 354 LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
LETDGV+ + V+ +DVD RT SNDIVE F VLGIEAVR L E+ VISFDG+YVNY
Sbjct: 1336 LETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNY 1395
Query: 534 RHLSVL 551
RHL++L
Sbjct: 1396 RHLALL 1401
[89][TOP]
>UniRef100_P08775 DNA-directed RNA polymerase II subunit RPB1 n=1 Tax=Mus musculus
RepID=RPB1_MOUSE
Length = 1970
Score = 146 bits (369), Expect = 9e-34
Identities = 83/186 (44%), Positives = 118/186 (63%), Gaps = 4/186 (2%)
Frame = +3
Query: 6 RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
+I+A FG DL+ + ++DNA +LV+R+R+ +E+K Q+ + V +M+
Sbjct: 1234 KINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKM-------------QEEEEVVDKMD 1280
Query: 186 DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMR----QDNKIVIDSVTGSFTKENEWL 353
D D+FLR +ES +L+++TL GI I KV+M + K +I + G F EW+
Sbjct: 1281 D-----DVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWI 1335
Query: 354 LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
LETDGV+ + V+ +DVD RT SNDIVE F VLGIEAVR L E+ VISFDG+YVNY
Sbjct: 1336 LETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNY 1395
Query: 534 RHLSVL 551
RHL++L
Sbjct: 1396 RHLALL 1401
[90][TOP]
>UniRef100_P24928 DNA-directed RNA polymerase II subunit RPB1 n=2 Tax=Euarchontoglires
RepID=RPB1_HUMAN
Length = 1970
Score = 146 bits (369), Expect = 9e-34
Identities = 83/186 (44%), Positives = 118/186 (63%), Gaps = 4/186 (2%)
Frame = +3
Query: 6 RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
+I+A FG DL+ + ++DNA +LV+R+R+ +E+K Q+ + V +M+
Sbjct: 1234 KINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKM-------------QEEEEVVDKMD 1280
Query: 186 DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMR----QDNKIVIDSVTGSFTKENEWL 353
D D+FLR +ES +L+++TL GI I KV+M + K +I + G F EW+
Sbjct: 1281 D-----DVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWI 1335
Query: 354 LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
LETDGV+ + V+ +DVD RT SNDIVE F VLGIEAVR L E+ VISFDG+YVNY
Sbjct: 1336 LETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNY 1395
Query: 534 RHLSVL 551
RHL++L
Sbjct: 1396 RHLALL 1401
[91][TOP]
>UniRef100_Q4XE57 Putative uncharacterized protein (Fragment) n=1 Tax=Plasmodium
chabaudi RepID=Q4XE57_PLACH
Length = 871
Score = 146 bits (368), Expect = 1e-33
Identities = 76/158 (48%), Positives = 101/158 (63%), Gaps = 7/158 (4%)
Frame = +3
Query: 99 NEDKAGISDSTKPRFEDEQDADRVAAEMEDE-------EDAEDLFLRKVESQLLSNLTLS 257
N G S+ T + +DE + + +E ED ED FL+K+ Q LS+L L
Sbjct: 406 NSGGMGGSNKTMGKGDDENNQKNRKKNLNNENNTMISKEDTEDTFLKKLMEQCLSSLKLR 465
Query: 258 GIPGIDKVFMRQDNKIVIDSVTGSFTKENEWLLETDGVNFIAVMGHEDVDFTRTVSNDIV 437
G+ I KV+MR+++KI DS G F + + W+L+TDG N ++ VDF +T+SNDIV
Sbjct: 466 GVENITKVYMREESKITYDSENGKFVRSSHWVLDTDGCNLESIFCAPSVDFKKTISNDIV 525
Query: 438 ETFEVLGIEAVRATLLNEIRTVISFDGAYVNYRHLSVL 551
E FEVLGIEAVR LL E+RTVISFD +YVNYRHLS+L
Sbjct: 526 EIFEVLGIEAVRRALLKELRTVISFDSSYVNYRHLSIL 563
[92][TOP]
>UniRef100_A9QMF8 DNA-directed RNA polymerase (Fragment) n=1 Tax=Rhabditis sp. SB347
RepID=A9QMF8_9BILA
Length = 621
Score = 146 bits (368), Expect = 1e-33
Identities = 84/187 (44%), Positives = 113/187 (60%), Gaps = 4/187 (2%)
Frame = +3
Query: 3 NRIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEM 182
++IH FG DL+V+ ++DNA +LV R+R+ N+D G + + ED
Sbjct: 442 DKIHQGFGDDLNVIYTDDNAEKLVFRIRLT--NQDDKGAEEEQIDKMED----------- 488
Query: 183 EDEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQ----DNKIVIDSVTGSFTKENEW 350
D+FLR +ES +LS+LTL GI I KV+M + D K +I + G+F EW
Sbjct: 489 -------DVFLRCIESNMLSDLTLQGITSIGKVYMHKPKTDDKKRMIITPEGAFKAIREW 541
Query: 351 LLETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVN 530
LLETDG + V+ VD RT SNDI E FEVLGIEAVR ++ E+ VISFDG+YVN
Sbjct: 542 LLETDGTALLKVLSERHVDAVRTSSNDICEIFEVLGIEAVRKSIEKEMNNVISFDGSYVN 601
Query: 531 YRHLSVL 551
YRHL++L
Sbjct: 602 YRHLALL 608
[93][TOP]
>UniRef100_A9QMF7 RNA polymerase 2 (Fragment) n=1 Tax=Pelodera pseudoteres
RepID=A9QMF7_9PELO
Length = 366
Score = 146 bits (368), Expect = 1e-33
Identities = 87/188 (46%), Positives = 117/188 (62%), Gaps = 5/188 (2%)
Frame = +3
Query: 3 NRIHAHFGGDLHVMASEDNAAELVIRVRVA-MENEDKAGISDSTKPRFEDEQDADRVAAE 179
+R+H FG DL+V+ ++DNA +LV R+R+ +N DK E E+ D+
Sbjct: 187 DRVHQGFGDDLNVIYTDDNADKLVFRLRITNQDNSDKG----------ESEEQVDK---- 232
Query: 180 MEDEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQ----DNKIVIDSVTGSFTKENE 347
MED D+FLR +ES +LS+LTL GI I KV+M + D K +I + G F E
Sbjct: 233 MED-----DVFLRCIESNMLSDLTLQGIEAISKVYMHKPTTDDKKRMIITEEGGFKAIPE 287
Query: 348 WLLETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYV 527
W+LETDG + V+ ++VD RT SNDI E FEVLGIEAVR + E+ VISFDG+YV
Sbjct: 288 WILETDGTALLRVLSEQNVDPIRTSSNDICEIFEVLGIEAVRKGIEREMHQVISFDGSYV 347
Query: 528 NYRHLSVL 551
NYRHL++L
Sbjct: 348 NYRHLALL 355
[94][TOP]
>UniRef100_UPI0000546D90 PREDICTED: im:7136071 isoform 1 n=1 Tax=Danio rerio
RepID=UPI0000546D90
Length = 1972
Score = 145 bits (367), Expect = 1e-33
Identities = 85/186 (45%), Positives = 119/186 (63%), Gaps = 4/186 (2%)
Frame = +3
Query: 6 RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
+I+A FG DL+ + ++DNA +LV+R+R+ +E+K EDE+ D+ M+
Sbjct: 1231 KINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKFQ---------EDEEVVDK----MD 1277
Query: 186 DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMR----QDNKIVIDSVTGSFTKENEWL 353
D D+FLR +ES +L+++TL GI I KV+M + K +I + G F EW+
Sbjct: 1278 D-----DVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWI 1332
Query: 354 LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
LETDGV+ + V+ +DVD RT SNDIVE F VLGIEAVR L E+ VISFDG+YVNY
Sbjct: 1333 LETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNY 1392
Query: 534 RHLSVL 551
RHL++L
Sbjct: 1393 RHLALL 1398
[95][TOP]
>UniRef100_UPI00016E658E UPI00016E658E related cluster n=1 Tax=Takifugu rubripes
RepID=UPI00016E658E
Length = 1628
Score = 145 bits (367), Expect = 1e-33
Identities = 85/186 (45%), Positives = 119/186 (63%), Gaps = 4/186 (2%)
Frame = +3
Query: 6 RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
+I+A FG DL+ + ++DNA +LV+R+R+ +E+K EDE+ D+ M+
Sbjct: 1232 KINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKFQ---------EDEEVVDK----MD 1278
Query: 186 DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMR----QDNKIVIDSVTGSFTKENEWL 353
D D+FLR +ES +L+++TL GI I KV+M + K +I + G F EW+
Sbjct: 1279 D-----DVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWI 1333
Query: 354 LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
LETDGV+ + V+ +DVD RT SNDIVE F VLGIEAVR L E+ VISFDG+YVNY
Sbjct: 1334 LETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNY 1393
Query: 534 RHLSVL 551
RHL++L
Sbjct: 1394 RHLALL 1399
[96][TOP]
>UniRef100_A9QMH3 DNA-directed RNA polymerase (Fragment) n=1 Tax=Rhabditis sp. PS1130
RepID=A9QMH3_9BILA
Length = 619
Score = 145 bits (367), Expect = 1e-33
Identities = 83/187 (44%), Positives = 113/187 (60%), Gaps = 4/187 (2%)
Frame = +3
Query: 3 NRIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEM 182
++IH FG DL+V+ ++DNA +LV R+R+ N+D G + + ED
Sbjct: 434 DKIHQGFGDDLNVIYTDDNADKLVFRLRIT--NQDDKGAEEEQIDKMED----------- 480
Query: 183 EDEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQ----DNKIVIDSVTGSFTKENEW 350
D+FLR +ES +LS+LTL GI I KV+M + D K VI + G F +W
Sbjct: 481 -------DVFLRCIESNMLSDLTLQGITSIQKVYMHKPQTDDKKRVIITPEGGFKSIADW 533
Query: 351 LLETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVN 530
LLETDG + V+ + +D RT SNDI E FEVLGIEAVR ++ E+ VISFDG+YVN
Sbjct: 534 LLETDGTALLKVLSEQHIDPVRTTSNDICEIFEVLGIEAVRKSIEREMNNVISFDGSYVN 593
Query: 531 YRHLSVL 551
YRHL++L
Sbjct: 594 YRHLALL 600
[97][TOP]
>UniRef100_A9QMF4 RNA polymerase 2 (Fragment) n=1 Tax=Rhabditoides inermiformis
RepID=A9QMF4_9BILA
Length = 597
Score = 145 bits (367), Expect = 1e-33
Identities = 86/187 (45%), Positives = 116/187 (62%), Gaps = 4/187 (2%)
Frame = +3
Query: 3 NRIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEM 182
+RIH FG DL+V+ ++D A +LV R+R+ + EDK G +E+ D+ M
Sbjct: 400 DRIHQGFGDDLNVIYTDDXADKLVFRLRITNQAEDKGG----------EEEQVDK----M 445
Query: 183 EDEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQ----DNKIVIDSVTGSFTKENEW 350
ED D+FLR +ES +LS+LTL GI I KV+M + D K ++ + G + EW
Sbjct: 446 ED-----DVFLRCIESNMLSDLTLQGIEAIAKVYMHKPTTDDKKRMVITPEGGYKAIPEW 500
Query: 351 LLETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVN 530
LLETDG + V+ + VD RT SNDI E FEVLGIEAVR + E+ VISFDG+YVN
Sbjct: 501 LLETDGTALLKVLAEKHVDPVRTSSNDICEIFEVLGIEAVRKAIEREMNHVISFDGSYVN 560
Query: 531 YRHLSVL 551
YRHL++L
Sbjct: 561 YRHLALL 567
[98][TOP]
>UniRef100_A9QMR4 RNA polymerase 2 (Fragment) n=1 Tax=Rhabditis blumi
RepID=A9QMR4_9BILA
Length = 193
Score = 145 bits (366), Expect = 2e-33
Identities = 82/187 (43%), Positives = 115/187 (61%), Gaps = 4/187 (2%)
Frame = +3
Query: 3 NRIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEM 182
++IH FG DL+V+ ++DNA +LV R+R+A +DKAG + + ED
Sbjct: 13 DKIHHGFGDDLNVIYTDDNADKLVFRLRIA-NPDDKAGAEEEQIDKMED----------- 60
Query: 183 EDEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMR----QDNKIVIDSVTGSFTKENEW 350
D+FLR +ES +LS+LTL GI I KV+M D K ++ + G+F +W
Sbjct: 61 -------DVFLRCIESNMLSDLTLQGISSISKVYMHTPNTDDKKRIVITPEGTFQAIPDW 113
Query: 351 LLETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVN 530
+LETDG + V+ ++D RT SNDI E FEVLGIEAVR ++ E+ VISFDG+YVN
Sbjct: 114 ILETDGTALLRVLSEPNIDPVRTTSNDICEIFEVLGIEAVRKSIEREMYNVISFDGSYVN 173
Query: 531 YRHLSVL 551
YRHL++L
Sbjct: 174 YRHLALL 180
[99][TOP]
>UniRef100_A9QMF6 RNA polymerase 2 (Fragment) n=1 Tax=Pristionchus pacificus
RepID=A9QMF6_PRIPA
Length = 583
Score = 145 bits (366), Expect = 2e-33
Identities = 85/186 (45%), Positives = 115/186 (61%), Gaps = 4/186 (2%)
Frame = +3
Query: 6 RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
+IH FG DL+V+ ++DNA +LV R+R+ N+DK D++ +ME
Sbjct: 406 KIHNGFGDDLNVIYTDDNADKLVFRLRIT--NQDKG--------------DSEEQVDKME 449
Query: 186 DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQ----DNKIVIDSVTGSFTKENEWL 353
D D+FLR +ES +LS+LTL GI I KV+M + D K I + GSF EW+
Sbjct: 450 D-----DVFLRCIESNMLSDLTLQGIESISKVYMHKPTTDDKKRTIITPDGSFKAIAEWI 504
Query: 354 LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
LETDG + V+ ++VD RT SNDI E FE+LGIEAVR + E+ VISFDG+YVNY
Sbjct: 505 LETDGTALLRVLSEKNVDPARTTSNDICEIFEILGIEAVRKAIEREMHQVISFDGSYVNY 564
Query: 534 RHLSVL 551
RHL++L
Sbjct: 565 RHLALL 570
[100][TOP]
>UniRef100_A9QME7 DNA-directed RNA polymerase (Fragment) n=1 Tax=Pellioditis
mediterranea RepID=A9QME7_9PELO
Length = 618
Score = 145 bits (366), Expect = 2e-33
Identities = 86/187 (45%), Positives = 116/187 (62%), Gaps = 4/187 (2%)
Frame = +3
Query: 3 NRIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEM 182
++IH FG DL+V+ ++DNA +LV R+R+ N+D G DE+ D+ M
Sbjct: 439 DKIHQGFGDDLNVIYTDDNADKLVFRLRIT--NQDDKGA---------DEEQVDK----M 483
Query: 183 EDEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQ----DNKIVIDSVTGSFTKENEW 350
ED D+FLR +E+ +LS+LTL GI I KV+M + D K V+ + G F EW
Sbjct: 484 ED-----DVFLRCIEANMLSDLTLQGITSISKVYMHKPTTDDKKRVVITPEGGFKAIPEW 538
Query: 351 LLETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVN 530
LLETDG + V+ + +D RT SNDI E FEVLGIEAVR + E+ VISFDG+YVN
Sbjct: 539 LLETDGTALLKVLSEQHIDPIRTSSNDICEIFEVLGIEAVRKAIEREMNNVISFDGSYVN 598
Query: 531 YRHLSVL 551
YRHL++L
Sbjct: 599 YRHLALL 605
[101][TOP]
>UniRef100_UPI0000E24648 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
(RPB1) n=1 Tax=Pan troglodytes RepID=UPI0000E24648
Length = 1913
Score = 145 bits (365), Expect = 3e-33
Identities = 84/186 (45%), Positives = 119/186 (63%), Gaps = 4/186 (2%)
Frame = +3
Query: 6 RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
+I+A FG DL+ + ++DNA +LV+R+R+ +E+K E+E+ D+ M+
Sbjct: 1234 KINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKMX---------EEEEVVDK----MD 1280
Query: 186 DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMR----QDNKIVIDSVTGSFTKENEWL 353
D D+FLR +ES +L+++TL GI I KV+M + K +I + G F EW+
Sbjct: 1281 D-----DVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWI 1335
Query: 354 LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
LETDGV+ + V+ +DVD RT SNDIVE F VLGIEAVR L E+ VISFDG+YVNY
Sbjct: 1336 LETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNY 1395
Query: 534 RHLSVL 551
RHL++L
Sbjct: 1396 RHLALL 1401
[102][TOP]
>UniRef100_Q6E228 DNA-directed RNA polymerase (Fragment) n=1 Tax=Rhabditella axei
RepID=Q6E228_9BILA
Length = 621
Score = 145 bits (365), Expect = 3e-33
Identities = 83/187 (44%), Positives = 117/187 (62%), Gaps = 4/187 (2%)
Frame = +3
Query: 3 NRIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEM 182
++IH FG DL+V+ ++DNA +LV R+R+ ++ A +E+ D+ M
Sbjct: 442 DKIHQGFGDDLNVIYTDDNADKLVFRLRITSSDDKGA-----------EEEQIDK----M 486
Query: 183 EDEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQ----DNKIVIDSVTGSFTKENEW 350
ED D+FLR +ES +LS+LTL G+ I KV+M + D K +I + G+F EW
Sbjct: 487 ED-----DVFLRCIESNMLSDLTLQGVTQISKVYMHKPTTDDKKRIIITPEGAFKAIREW 541
Query: 351 LLETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVN 530
LLETDG + V+ + +D RT SNDI E FEVLGIEAVR ++ E+ VISFDG+YVN
Sbjct: 542 LLETDGTALLKVLSEQHIDPARTTSNDICEIFEVLGIEAVRKSIEREMNNVISFDGSYVN 601
Query: 531 YRHLSVL 551
YRHL++L
Sbjct: 602 YRHLALL 608
[103][TOP]
>UniRef100_A9QMG8 RNA polymerase 2 (Fragment) n=1 Tax=rhabditoid sp. PDL15
RepID=A9QMG8_9BILA
Length = 587
Score = 145 bits (365), Expect = 3e-33
Identities = 86/180 (47%), Positives = 111/180 (61%), Gaps = 4/180 (2%)
Frame = +3
Query: 3 NRIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEM 182
+RIH+ FGGDL+V+ ++DNA +LV R+R+A + DK + AD +M
Sbjct: 426 DRIHSGFGGDLNVIYTDDNAEKLVFRLRIANADNDKG-------------EGADEQVDKM 472
Query: 183 EDEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQ----DNKIVIDSVTGSFTKENEW 350
ED D+FLR VES +LS+LTL GI I KV+M + D K I + GSF EW
Sbjct: 473 ED-----DVFLRCVESNMLSDLTLQGIEAIAKVYMHKPTTDDKKKTIVTQDGSFKSIAEW 527
Query: 351 LLETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVN 530
LLETDG + V+ ++VD RT SNDI E FEVLGIEAVR + E+ VISFDG+YVN
Sbjct: 528 LLETDGTALLKVLSEQNVDPVRTTSNDICEIFEVLGIEAVRKAIEREMNQVISFDGSYVN 587
[104][TOP]
>UniRef100_P91819 DNA-directed RNA polymerase (Fragment) n=1 Tax=Zeldia punctata
RepID=P91819_ZELPU
Length = 629
Score = 144 bits (364), Expect = 3e-33
Identities = 86/186 (46%), Positives = 112/186 (60%), Gaps = 4/186 (2%)
Frame = +3
Query: 6 RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
+IH FG DLHV+ ++DNA +LV +R+ DK E E+ D+ ME
Sbjct: 436 KIHKGFGEDLHVIYTDDNADKLVFHIRLTNSTTDK-----------ESEEQIDK----ME 480
Query: 186 DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQ----DNKIVIDSVTGSFTKENEWL 353
D D FL+ +ES +LS+LTL GI I KV+M + D K V + GSF +EW+
Sbjct: 481 D-----DTFLKCIESNMLSDLTLQGIEAISKVYMHKPQTDDKKRVEVTQDGSFRMVSEWM 535
Query: 354 LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
LETDG + V+ +VD RT SNDI E FEVLGIEAVR + E+ VISFDG+YVNY
Sbjct: 536 LETDGTALLRVLSEPNVDPIRTYSNDICEIFEVLGIEAVRKAIEREMNQVISFDGSYVNY 595
Query: 534 RHLSVL 551
RHL++L
Sbjct: 596 RHLALL 601
[105][TOP]
>UniRef100_A9QMP4 RNA polymerase 2 (Fragment) n=1 Tax=Rhabditis brassicae
RepID=A9QMP4_9BILA
Length = 205
Score = 144 bits (364), Expect = 3e-33
Identities = 86/187 (45%), Positives = 116/187 (62%), Gaps = 4/187 (2%)
Frame = +3
Query: 3 NRIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEM 182
++IH FG DL+V+ ++DNA +LV R+R+ N+D G DE+ D+ M
Sbjct: 19 DKIHQGFGDDLNVIYTDDNADKLVFRLRIT--NQDDKGA---------DEEQIDK----M 63
Query: 183 EDEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQ----DNKIVIDSVTGSFTKENEW 350
ED D+FLR +ES +LS+LTL GI I KV+M + D K I + G F +W
Sbjct: 64 ED-----DVFLRCIESNMLSDLTLQGITSICKVYMHKPQTDDKKRTIITPEGGFKSIADW 118
Query: 351 LLETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVN 530
LLETDG + V+ + +D RT SNDI E FEVLGIEAVR ++ E+ VISFDG+YVN
Sbjct: 119 LLETDGTALLKVLSEQHIDPVRTTSNDICEIFEVLGIEAVRKSIEREMNNVISFDGSYVN 178
Query: 531 YRHLSVL 551
YRHL++L
Sbjct: 179 YRHLALL 185
[106][TOP]
>UniRef100_A8Q5I6 DNA-directed RNA polymerase n=1 Tax=Malassezia globosa CBS 7966
RepID=A8Q5I6_MALGO
Length = 1607
Score = 144 bits (364), Expect = 3e-33
Identities = 82/186 (44%), Positives = 114/186 (61%), Gaps = 2/186 (1%)
Frame = +3
Query: 3 NRIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEM 182
++I A FG D+ VM SEDNA ELV+R+R+ + DK E+
Sbjct: 1019 SKIGAMFGRDIFVMHSEDNAEELVLRIRIVDNDPDK----------------------EV 1056
Query: 183 EDEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQDNKIV--IDSVTGSFTKENEWLL 356
+ EED +FL+ + Q+L+++ L G+PGI KVF+ + +KI D TG + E++L
Sbjct: 1057 QGEED---VFLKSLAQQMLTDIALKGVPGISKVFIVKQDKITRRFDPETGEWDSLKEYVL 1113
Query: 357 ETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNYR 536
ETDG N V+ + VD +RT+SN+ VE F V GIEA R +LL EIR VI FDG+YVNYR
Sbjct: 1114 ETDGTNLKDVLAVDGVDVSRTLSNNCVEVFRVFGIEAARGSLLKEIRNVIEFDGSYVNYR 1173
Query: 537 HLSVLV 554
HL++LV
Sbjct: 1174 HLALLV 1179
[107][TOP]
>UniRef100_UPI00005A0B2B PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
(RPB1) isoform 22 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B2B
Length = 1892
Score = 144 bits (363), Expect = 4e-33
Identities = 83/186 (44%), Positives = 119/186 (63%), Gaps = 4/186 (2%)
Frame = +3
Query: 6 RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
+I+A FG DL+ + ++DNA +LV+R+R+ +E+K ++E+ D+ M+
Sbjct: 1236 KINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENK----------MQEEEVVDK----MD 1281
Query: 186 DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMR----QDNKIVIDSVTGSFTKENEWL 353
D D+FLR +ES +L+++TL GI I KV+M + K +I + G F EW+
Sbjct: 1282 D-----DVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWI 1336
Query: 354 LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
LETDGV+ + V+ +DVD RT SNDIVE F VLGIEAVR L E+ VISFDG+YVNY
Sbjct: 1337 LETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNY 1396
Query: 534 RHLSVL 551
RHL++L
Sbjct: 1397 RHLALL 1402
[108][TOP]
>UniRef100_UPI00005A0B2A PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
(RPB1) isoform 21 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B2A
Length = 1896
Score = 144 bits (363), Expect = 4e-33
Identities = 83/186 (44%), Positives = 119/186 (63%), Gaps = 4/186 (2%)
Frame = +3
Query: 6 RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
+I+A FG DL+ + ++DNA +LV+R+R+ +E+K ++E+ D+ M+
Sbjct: 1236 KINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENK----------MQEEEVVDK----MD 1281
Query: 186 DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMR----QDNKIVIDSVTGSFTKENEWL 353
D D+FLR +ES +L+++TL GI I KV+M + K +I + G F EW+
Sbjct: 1282 D-----DVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWI 1336
Query: 354 LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
LETDGV+ + V+ +DVD RT SNDIVE F VLGIEAVR L E+ VISFDG+YVNY
Sbjct: 1337 LETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNY 1396
Query: 534 RHLSVL 551
RHL++L
Sbjct: 1397 RHLALL 1402
[109][TOP]
>UniRef100_A9QMH1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Acrobeles maximus
RepID=A9QMH1_9BILA
Length = 616
Score = 144 bits (363), Expect = 4e-33
Identities = 86/186 (46%), Positives = 111/186 (59%), Gaps = 4/186 (2%)
Frame = +3
Query: 6 RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
+IH FG DLHV+ ++DNA +LV +R+ DK G E+ D+ ME
Sbjct: 443 KIHKGFGDDLHVIYTDDNADKLVFHIRLTNSTADKEG-----------EEQIDK----ME 487
Query: 186 DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQ----DNKIVIDSVTGSFTKENEWL 353
D D FL+ +ES +LS+LTL GI I KV+M + D K V + GSF +EW+
Sbjct: 488 D-----DTFLKCIESNMLSDLTLQGIESISKVYMHKPQTDDKKRVELTQDGSFRMVSEWM 542
Query: 354 LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
LETDG + V+ VD RT SNDI E FEVLGIEAVR + E+ VISFDG+YVNY
Sbjct: 543 LETDGTALLKVLSEPHVDPVRTYSNDICEIFEVLGIEAVRKAIEREMNQVISFDGSYVNY 602
Query: 534 RHLSVL 551
RHL++L
Sbjct: 603 RHLALL 608
[110][TOP]
>UniRef100_Q7RJS0 DNA-directed RNA polymerase n=1 Tax=Plasmodium yoelii yoelii
RepID=Q7RJS0_PLAYO
Length = 2312
Score = 143 bits (361), Expect = 7e-33
Identities = 69/124 (55%), Positives = 90/124 (72%)
Frame = +3
Query: 180 MEDEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQDNKIVIDSVTGSFTKENEWLLE 359
M +ED ED FL+K+ + LS+L L G+ I KV+MR+++KI DS G F + + W+L+
Sbjct: 1745 MISKEDTEDTFLKKLMEECLSSLKLRGVENITKVYMREESKITYDSENGKFVRSSHWVLD 1804
Query: 360 TDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNYRH 539
TDG N ++ VDF +T+SNDIVE FEVLGIEAVR LL E+RTVISFD +YVNYRH
Sbjct: 1805 TDGCNLESIFCAPSVDFKKTISNDIVEIFEVLGIEAVRRALLKELRTVISFDSSYVNYRH 1864
Query: 540 LSVL 551
LS+L
Sbjct: 1865 LSIL 1868
[111][TOP]
>UniRef100_Q25151 DNA-directed RNA polymerase (Fragment) n=1 Tax=Helobdella stagnalis
RepID=Q25151_9ANNE
Length = 1337
Score = 143 bits (361), Expect = 7e-33
Identities = 84/186 (45%), Positives = 117/186 (62%), Gaps = 4/186 (2%)
Frame = +3
Query: 6 RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
+I A FG DL+ + ++DNA +LV+RVR+ M N+D + +QD + +M
Sbjct: 1141 KITAGFGDDLNCIFNDDNAEKLVLRVRL-MSNQDG-----------KQDQDTEEQIDKMP 1188
Query: 186 DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQ----DNKIVIDSVTGSFTKENEWL 353
D D FL+ +ES +L+++TL GI I KV+M+Q D K +I G F +W+
Sbjct: 1189 D-----DTFLKHIESNMLTDMTLQGITSIAKVYMQQPTTDDKKRIIIDEKGEFKALQDWI 1243
Query: 354 LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
LETDG V+ E+VD +TVSNDIVE FEVLGIEAVR ++ E+ VISFDG+YVNY
Sbjct: 1244 LETDGTALRRVLSVENVDPVKTVSNDIVEVFEVLGIEAVRKSIEREMNNVISFDGSYVNY 1303
Query: 534 RHLSVL 551
RHL++L
Sbjct: 1304 RHLALL 1309
[112][TOP]
>UniRef100_A9QMQ1 RNA polymerase 2 (Fragment) n=1 Tax=Pristionchus pacificus
RepID=A9QMQ1_PRIPA
Length = 318
Score = 143 bits (361), Expect = 7e-33
Identities = 85/186 (45%), Positives = 114/186 (61%), Gaps = 4/186 (2%)
Frame = +3
Query: 6 RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
+IH FG DL+V+ ++DNA +LV R+R+ N+DK D++ +ME
Sbjct: 148 KIHNGFGDDLNVIYTDDNADKLVFRLRIT--NQDKG--------------DSEEQVDKME 191
Query: 186 DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQ----DNKIVIDSVTGSFTKENEWL 353
D D+FLR +ES +LS+LTL GI I KV+M + D K I + GSF EW+
Sbjct: 192 D-----DVFLRCIESNMLSDLTLQGIESISKVYMHKPTTDDKKRTIITPDGSFKAIAEWI 246
Query: 354 LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
LETDG + V+ ++VD RT SNDI E FE+LGIEAVR + E VISFDG+YVNY
Sbjct: 247 LETDGTALLRVLSEKNVDPARTXSNDICEIFEILGIEAVRKAIERERHQVISFDGSYVNY 306
Query: 534 RHLSVL 551
RHL++L
Sbjct: 307 RHLALL 312
[113][TOP]
>UniRef100_A9QME1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Rhabditis brassicae
RepID=A9QME1_9BILA
Length = 628
Score = 143 bits (361), Expect = 7e-33
Identities = 86/185 (46%), Positives = 114/185 (61%), Gaps = 4/185 (2%)
Frame = +3
Query: 9 IHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEMED 188
IH FG DL+V+ ++DNA +LV R+R+ N+D G DE+ D+ MED
Sbjct: 437 IHQGFGDDLNVIYTDDNADKLVFRLRIT--NQDDKGA---------DEEQIDK----MED 481
Query: 189 EEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQ----DNKIVIDSVTGSFTKENEWLL 356
D+FLR +ES +LS+LTL GI I KV+M + D K I + G F +WLL
Sbjct: 482 -----DVFLRCIESNMLSDLTLQGITSICKVYMHKPQTDDKKRTIITPEGGFKSIADWLL 536
Query: 357 ETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNYR 536
ETDG + V+ + +D RT SNDI E FEVLGIEAVR ++ E+ VISFDG+YVNYR
Sbjct: 537 ETDGTALLKVLSEQHIDPVRTTSNDICEIFEVLGIEAVRKSIEREMNNVISFDGSYVNYR 596
Query: 537 HLSVL 551
HL++L
Sbjct: 597 HLALL 601
[114][TOP]
>UniRef100_UPI000186501C hypothetical protein BRAFLDRAFT_115025 n=1 Tax=Branchiostoma floridae
RepID=UPI000186501C
Length = 1956
Score = 143 bits (360), Expect = 1e-32
Identities = 84/186 (45%), Positives = 123/186 (66%), Gaps = 4/186 (2%)
Frame = +3
Query: 6 RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
+I+A FG DL+ + ++DNA +LV+R+R+ M N+D + DE+ EM
Sbjct: 1230 KINAGFGDDLNCIFNDDNAEKLVLRIRI-MNNDDS---------KMMDEE-------EMV 1272
Query: 186 DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFM---RQDNKI-VIDSVTGSFTKENEWL 353
D+ D +D+FLR +E+ +L+++TL GI I KV+M +QD K +I + G + EW+
Sbjct: 1273 DKMD-DDVFLRCIEANMLTDMTLQGIEQIAKVYMHLPQQDTKKRIIITDEGEYKALQEWI 1331
Query: 354 LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
LETDGVN + V+ ++VD RT SNDIVE F++LGIEAVR + E+ VISFDG+YVNY
Sbjct: 1332 LETDGVNLMKVLSEKNVDPVRTTSNDIVEIFQILGIEAVRKAIEKEMNHVISFDGSYVNY 1391
Query: 534 RHLSVL 551
RHL++L
Sbjct: 1392 RHLALL 1397
[115][TOP]
>UniRef100_Q5CUJ2 DNA-directed RNA polymerase (Fragment) n=1 Tax=Cryptosporidium parvum
Iowa II RepID=Q5CUJ2_CRYPV
Length = 1902
Score = 143 bits (360), Expect = 1e-32
Identities = 76/174 (43%), Positives = 114/174 (65%)
Frame = +3
Query: 30 DLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEMEDEEDAEDL 209
+L + ++DN+ ELV+R+R+ E I D+ E++ + + + +E+ +
Sbjct: 1277 ELDCIWTDDNSDELVLRLRIK-NIEPTNNIRDNIHSSEENDSISPSITSGVEEHK----- 1330
Query: 210 FLRKVESQLLSNLTLSGIPGIDKVFMRQDNKIVIDSVTGSFTKENEWLLETDGVNFIAVM 389
FL K+ ++ LS +TL GI I KV+M+++ DSV+ ++N+W+L+TDG N AV+
Sbjct: 1331 FLEKLMTECLSQITLRGINNIKKVYMKEEQVSRYDSVSQKMVRDNQWVLDTDGCNLEAVL 1390
Query: 390 GHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNYRHLSVL 551
H +D TRT+SNDI E F VLGIEAVR LL E+RTVISFDG+YVNYRHL++L
Sbjct: 1391 CHTAIDSTRTISNDITEVFSVLGIEAVRRALLRELRTVISFDGSYVNYRHLALL 1444
[116][TOP]
>UniRef100_Q23699 DNA-directed RNA polymerase (Fragment) n=1 Tax=Crassostrea gigas
RepID=Q23699_CRAGI
Length = 1340
Score = 143 bits (360), Expect = 1e-32
Identities = 81/186 (43%), Positives = 114/186 (61%), Gaps = 4/186 (2%)
Frame = +3
Query: 6 RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
+I A FG DL+ + ++DNA +LV+R+R+ +E K Q+ + + +ME
Sbjct: 1145 KITAGFGDDLNCIFNDDNAEKLVLRIRIMNSDESKM-------------QNEEEIVDKME 1191
Query: 186 DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMR----QDNKIVIDSVTGSFTKENEWL 353
D D+FLR +E+ LLS++TL GI I KV+M +D K + + G F EW+
Sbjct: 1192 D-----DVFLRCIEANLLSDMTLQGIEAIAKVYMHLPNTEDKKRISITEEGEFKAVAEWI 1246
Query: 354 LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
LETDG + V+ DVD RT +NDIVE F +LGIEAVR ++ E+ VISFDG+YVNY
Sbjct: 1247 LETDGTALMKVLSQRDVDPIRTTTNDIVEVFSILGIEAVRKSIEKEMNHVISFDGSYVNY 1306
Query: 534 RHLSVL 551
RHLS+L
Sbjct: 1307 RHLSLL 1312
[117][TOP]
>UniRef100_C3ZES3 DNA-directed RNA polymerase n=1 Tax=Branchiostoma floridae
RepID=C3ZES3_BRAFL
Length = 1934
Score = 143 bits (360), Expect = 1e-32
Identities = 84/186 (45%), Positives = 123/186 (66%), Gaps = 4/186 (2%)
Frame = +3
Query: 6 RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
+I+A FG DL+ + ++DNA +LV+R+R+ M N+D + DE+ EM
Sbjct: 1230 KINAGFGDDLNCIFNDDNAEKLVLRIRI-MNNDDS---------KMMDEE-------EMV 1272
Query: 186 DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFM---RQDNKI-VIDSVTGSFTKENEWL 353
D+ D +D+FLR +E+ +L+++TL GI I KV+M +QD K +I + G + EW+
Sbjct: 1273 DKMD-DDVFLRCIEANMLTDMTLQGIEQIAKVYMHLPQQDTKKRIIITDEGEYKALQEWI 1331
Query: 354 LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
LETDGVN + V+ ++VD RT SNDIVE F++LGIEAVR + E+ VISFDG+YVNY
Sbjct: 1332 LETDGVNLMKVLSEKNVDPVRTTSNDIVEIFQILGIEAVRKAIEKEMNHVISFDGSYVNY 1391
Query: 534 RHLSVL 551
RHL++L
Sbjct: 1392 RHLALL 1397
[118][TOP]
>UniRef100_Q5CH45 DNA-directed RNA polymerase n=1 Tax=Cryptosporidium hominis
RepID=Q5CH45_CRYHO
Length = 1895
Score = 142 bits (359), Expect = 1e-32
Identities = 75/174 (43%), Positives = 114/174 (65%)
Frame = +3
Query: 30 DLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEMEDEEDAEDL 209
+L + ++DN+ ELV+R+R+ E I D+ E++ + + + +E+ +
Sbjct: 1270 ELDCIWTDDNSDELVLRLRIK-NIEPTNNICDNIHSSEENDSISPSITSGVEEHK----- 1323
Query: 210 FLRKVESQLLSNLTLSGIPGIDKVFMRQDNKIVIDSVTGSFTKENEWLLETDGVNFIAVM 389
FL K+ ++ LS +TL GI I KV+M+++ DS++ ++N+W+L+TDG N AV+
Sbjct: 1324 FLEKLMTECLSQITLRGINNIKKVYMKEEQVSRYDSISQKMVRDNQWVLDTDGCNLEAVL 1383
Query: 390 GHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNYRHLSVL 551
H +D TRT+SNDI E F VLGIEAVR LL E+RTVISFDG+YVNYRHL++L
Sbjct: 1384 CHTAIDSTRTISNDITEVFSVLGIEAVRRALLRELRTVISFDGSYVNYRHLALL 1437
[119][TOP]
>UniRef100_A9QMG6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Teratorhabditis
palmarum RepID=A9QMG6_9BILA
Length = 633
Score = 142 bits (359), Expect = 1e-32
Identities = 83/187 (44%), Positives = 108/187 (57%), Gaps = 4/187 (2%)
Frame = +3
Query: 3 NRIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEM 182
+RI FG DLH + ++DNA LV R+R+ EN+ D + +M
Sbjct: 442 SRITQGFGDDLHTIYTDDNADSLVFRIRIRSENKG----------------DTEETIEKM 485
Query: 183 EDEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQ----DNKIVIDSVTGSFTKENEW 350
ED D+FLR VE +L+ LTL GI I KV+M + D K + + G F EW
Sbjct: 486 ED-----DMFLRAVEQNMLAELTLQGIEQISKVYMHKPTTDDKKRTVITPEGDFRSIAEW 540
Query: 351 LLETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVN 530
LLETDG + + V+ +VD RT SNDI E FEVLGIEAVR + E+ VISFDG+YVN
Sbjct: 541 LLETDGTSLLDVLSQPNVDPVRTYSNDICEIFEVLGIEAVRKAIEREMHQVISFDGSYVN 600
Query: 531 YRHLSVL 551
YRHL++L
Sbjct: 601 YRHLALL 607
[120][TOP]
>UniRef100_A5K7P4 DNA-directed RNA polymerase n=1 Tax=Plasmodium vivax
RepID=A5K7P4_PLAVI
Length = 2379
Score = 142 bits (359), Expect = 1e-32
Identities = 70/121 (57%), Positives = 87/121 (71%)
Frame = +3
Query: 189 EEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQDNKIVIDSVTGSFTKENEWLLETDG 368
+ED ED FL+K+ Q LS L L GI I KV+MR+++KI DS G F + + W+L+TDG
Sbjct: 1767 KEDTEDTFLKKLMEQCLSTLKLRGIENITKVYMREESKITYDSTNGKFVRSSHWVLDTDG 1826
Query: 369 VNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNYRHLSV 548
N + VD+ +TVSNDIVE FEVLGIEAVR LL E+RTVISFD +YVNYRHLS+
Sbjct: 1827 CNLEHIFCASHVDYKKTVSNDIVEIFEVLGIEAVRRALLKELRTVISFDSSYVNYRHLSI 1886
Query: 549 L 551
L
Sbjct: 1887 L 1887
[121][TOP]
>UniRef100_UPI00005A0B27 PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide
A isoform 18 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B27
Length = 1831
Score = 142 bits (358), Expect = 2e-32
Identities = 82/186 (44%), Positives = 116/186 (62%), Gaps = 4/186 (2%)
Frame = +3
Query: 6 RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
+I+A FG DL+ + ++DNA +LV+R+R+ +E+K E+
Sbjct: 1234 KINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKM--------------------QEVV 1273
Query: 186 DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMR----QDNKIVIDSVTGSFTKENEWL 353
D+ D +D+FLR +ES +L+++TL GI I KV+M + K +I + G F EW+
Sbjct: 1274 DKMD-DDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWI 1332
Query: 354 LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
LETDGV+ + V+ +DVD RT SNDIVE F VLGIEAVR L E+ VISFDG+YVNY
Sbjct: 1333 LETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNY 1392
Query: 534 RHLSVL 551
RHL++L
Sbjct: 1393 RHLALL 1398
[122][TOP]
>UniRef100_UPI00005A0B23 PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide
A isoform 14 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B23
Length = 1653
Score = 142 bits (358), Expect = 2e-32
Identities = 82/186 (44%), Positives = 116/186 (62%), Gaps = 4/186 (2%)
Frame = +3
Query: 6 RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
+I+A FG DL+ + ++DNA +LV+R+R+ +E+K E+
Sbjct: 1207 KINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKM--------------------QEVV 1246
Query: 186 DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMR----QDNKIVIDSVTGSFTKENEWL 353
D+ D +D+FLR +ES +L+++TL GI I KV+M + K +I + G F EW+
Sbjct: 1247 DKMD-DDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWI 1305
Query: 354 LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
LETDGV+ + V+ +DVD RT SNDIVE F VLGIEAVR L E+ VISFDG+YVNY
Sbjct: 1306 LETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNY 1365
Query: 534 RHLSVL 551
RHL++L
Sbjct: 1366 RHLALL 1371
[123][TOP]
>UniRef100_UPI00005A0B22 PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide
A isoform 13 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B22
Length = 1722
Score = 142 bits (358), Expect = 2e-32
Identities = 82/186 (44%), Positives = 116/186 (62%), Gaps = 4/186 (2%)
Frame = +3
Query: 6 RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
+I+A FG DL+ + ++DNA +LV+R+R+ +E+K E+
Sbjct: 1207 KINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKM--------------------QEVV 1246
Query: 186 DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMR----QDNKIVIDSVTGSFTKENEWL 353
D+ D +D+FLR +ES +L+++TL GI I KV+M + K +I + G F EW+
Sbjct: 1247 DKMD-DDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWI 1305
Query: 354 LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
LETDGV+ + V+ +DVD RT SNDIVE F VLGIEAVR L E+ VISFDG+YVNY
Sbjct: 1306 LETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNY 1365
Query: 534 RHLSVL 551
RHL++L
Sbjct: 1366 RHLALL 1371
[124][TOP]
>UniRef100_UPI00005A0B1F PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide
A isoform 10 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B1F
Length = 1840
Score = 142 bits (358), Expect = 2e-32
Identities = 82/186 (44%), Positives = 116/186 (62%), Gaps = 4/186 (2%)
Frame = +3
Query: 6 RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
+I+A FG DL+ + ++DNA +LV+R+R+ +E+K E+
Sbjct: 1230 KINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKM--------------------QEVV 1269
Query: 186 DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMR----QDNKIVIDSVTGSFTKENEWL 353
D+ D +D+FLR +ES +L+++TL GI I KV+M + K +I + G F EW+
Sbjct: 1270 DKMD-DDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWI 1328
Query: 354 LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
LETDGV+ + V+ +DVD RT SNDIVE F VLGIEAVR L E+ VISFDG+YVNY
Sbjct: 1329 LETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNY 1388
Query: 534 RHLSVL 551
RHL++L
Sbjct: 1389 RHLALL 1394
[125][TOP]
>UniRef100_UPI00005A0B1E PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide
A isoform 9 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B1E
Length = 1851
Score = 142 bits (358), Expect = 2e-32
Identities = 82/186 (44%), Positives = 116/186 (62%), Gaps = 4/186 (2%)
Frame = +3
Query: 6 RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
+I+A FG DL+ + ++DNA +LV+R+R+ +E+K E+
Sbjct: 1230 KINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKM--------------------QEVV 1269
Query: 186 DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMR----QDNKIVIDSVTGSFTKENEWL 353
D+ D +D+FLR +ES +L+++TL GI I KV+M + K +I + G F EW+
Sbjct: 1270 DKMD-DDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWI 1328
Query: 354 LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
LETDGV+ + V+ +DVD RT SNDIVE F VLGIEAVR L E+ VISFDG+YVNY
Sbjct: 1329 LETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNY 1388
Query: 534 RHLSVL 551
RHL++L
Sbjct: 1389 RHLALL 1394
[126][TOP]
>UniRef100_UPI00005A0B1C PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide
A isoform 8 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B1C
Length = 1719
Score = 142 bits (358), Expect = 2e-32
Identities = 82/186 (44%), Positives = 116/186 (62%), Gaps = 4/186 (2%)
Frame = +3
Query: 6 RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
+I+A FG DL+ + ++DNA +LV+R+R+ +E+K E+
Sbjct: 1228 KINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKM--------------------QEVV 1267
Query: 186 DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMR----QDNKIVIDSVTGSFTKENEWL 353
D+ D +D+FLR +ES +L+++TL GI I KV+M + K +I + G F EW+
Sbjct: 1268 DKMD-DDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWI 1326
Query: 354 LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
LETDGV+ + V+ +DVD RT SNDIVE F VLGIEAVR L E+ VISFDG+YVNY
Sbjct: 1327 LETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNY 1386
Query: 534 RHLSVL 551
RHL++L
Sbjct: 1387 RHLALL 1392
[127][TOP]
>UniRef100_UPI00005A0B1B PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide
A isoform 7 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B1B
Length = 1858
Score = 142 bits (358), Expect = 2e-32
Identities = 82/186 (44%), Positives = 116/186 (62%), Gaps = 4/186 (2%)
Frame = +3
Query: 6 RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
+I+A FG DL+ + ++DNA +LV+R+R+ +E+K E+
Sbjct: 1228 KINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKM--------------------QEVV 1267
Query: 186 DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMR----QDNKIVIDSVTGSFTKENEWL 353
D+ D +D+FLR +ES +L+++TL GI I KV+M + K +I + G F EW+
Sbjct: 1268 DKMD-DDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWI 1326
Query: 354 LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
LETDGV+ + V+ +DVD RT SNDIVE F VLGIEAVR L E+ VISFDG+YVNY
Sbjct: 1327 LETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNY 1386
Query: 534 RHLSVL 551
RHL++L
Sbjct: 1387 RHLALL 1392
[128][TOP]
>UniRef100_UPI00005A0B1A PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
(RPB1) isoform 6 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B1A
Length = 1767
Score = 142 bits (358), Expect = 2e-32
Identities = 82/186 (44%), Positives = 116/186 (62%), Gaps = 4/186 (2%)
Frame = +3
Query: 6 RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
+I+A FG DL+ + ++DNA +LV+R+R+ +E+K E+
Sbjct: 1222 KINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKM--------------------QEVV 1261
Query: 186 DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMR----QDNKIVIDSVTGSFTKENEWL 353
D+ D +D+FLR +ES +L+++TL GI I KV+M + K +I + G F EW+
Sbjct: 1262 DKMD-DDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWI 1320
Query: 354 LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
LETDGV+ + V+ +DVD RT SNDIVE F VLGIEAVR L E+ VISFDG+YVNY
Sbjct: 1321 LETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNY 1380
Query: 534 RHLSVL 551
RHL++L
Sbjct: 1381 RHLALL 1386
[129][TOP]
>UniRef100_UPI00005A0B19 PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide
A isoform 5 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B19
Length = 1693
Score = 142 bits (358), Expect = 2e-32
Identities = 82/186 (44%), Positives = 116/186 (62%), Gaps = 4/186 (2%)
Frame = +3
Query: 6 RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
+I+A FG DL+ + ++DNA +LV+R+R+ +E+K E+
Sbjct: 1220 KINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKM--------------------QEVV 1259
Query: 186 DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMR----QDNKIVIDSVTGSFTKENEWL 353
D+ D +D+FLR +ES +L+++TL GI I KV+M + K +I + G F EW+
Sbjct: 1260 DKMD-DDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWI 1318
Query: 354 LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
LETDGV+ + V+ +DVD RT SNDIVE F VLGIEAVR L E+ VISFDG+YVNY
Sbjct: 1319 LETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNY 1378
Query: 534 RHLSVL 551
RHL++L
Sbjct: 1379 RHLALL 1384
[130][TOP]
>UniRef100_UPI00017B0A92 UPI00017B0A92 related cluster n=1 Tax=Tetraodon nigroviridis
RepID=UPI00017B0A92
Length = 1714
Score = 142 bits (358), Expect = 2e-32
Identities = 84/186 (45%), Positives = 117/186 (62%), Gaps = 4/186 (2%)
Frame = +3
Query: 6 RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
+I+A G DL+ + ++DNA +LV+R+R+ +E K EDE+ D+ M+
Sbjct: 1211 KINAGLGDDLNCIFNDDNAEQLVLRIRIMNSDEYKFQ---------EDEEVVDK----MD 1257
Query: 186 DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMR----QDNKIVIDSVTGSFTKENEWL 353
D D+FLR +ES +L+++TL GI I KV+M + K +I + G F EW+
Sbjct: 1258 D-----DVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWI 1312
Query: 354 LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
LETDGV+ + V+ +DVD RT SNDIVE F VLGIEAVR L E+ VISFDG+YVNY
Sbjct: 1313 LETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNY 1372
Query: 534 RHLSVL 551
RHL++L
Sbjct: 1373 RHLALL 1378
[131][TOP]
>UniRef100_A9QMG5 DNA-directed RNA polymerase (Fragment) n=1 Tax=Mesorhabditis
longespiculosa RepID=A9QMG5_9BILA
Length = 623
Score = 142 bits (358), Expect = 2e-32
Identities = 81/186 (43%), Positives = 107/186 (57%), Gaps = 4/186 (2%)
Frame = +3
Query: 6 RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
RI FG DL+V+ ++DNA LV R+R+ ++ DK + + ED
Sbjct: 443 RIQQAFGEDLNVIYTDDNADSLVFRIRITSQDNDKVDTEEEQVDKMED------------ 490
Query: 186 DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQ----DNKIVIDSVTGSFTKENEWL 353
D FLR +E +LS+LTL GI I KV+M + D K ++ + G F EWL
Sbjct: 491 ------DAFLRALEQNMLSDLTLQGIEQITKVYMHKPNTDDKKRIVVTPEGDFKAIPEWL 544
Query: 354 LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
LETDG + V+ +VD RT SNDI E FEVLGIEAVR + E+ VISFDG+YVNY
Sbjct: 545 LETDGTALLQVLSQANVDPVRTTSNDICEIFEVLGIEAVRKAIEREMHQVISFDGSYVNY 604
Query: 534 RHLSVL 551
RHL++L
Sbjct: 605 RHLALL 610
[132][TOP]
>UniRef100_A9QMD9 RNA polymerase 2 (Fragment) n=1 Tax=Protorhabditis sp. JB122
RepID=A9QMD9_9BILA
Length = 595
Score = 142 bits (358), Expect = 2e-32
Identities = 83/187 (44%), Positives = 113/187 (60%), Gaps = 4/187 (2%)
Frame = +3
Query: 3 NRIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEM 182
++IH FG D++V+ ++DNA +LV R+R+ +E A +E+ D+ M
Sbjct: 402 DKIHQGFGDDINVIYTDDNAEKLVFRLRITSHDEKSA-----------EEEQIDK----M 446
Query: 183 EDEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQ----DNKIVIDSVTGSFTKENEW 350
ED D+FLR +E +LS+LTL GI I KV+M + D K ++ S G F EW
Sbjct: 447 ED-----DVFLRCLEGNMLSDLTLQGITSIAKVYMHKPTTDDKKRIVISPEGGFKAIPEW 501
Query: 351 LLETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVN 530
LLETDG + V+ +D RT SNDI E FEVLGIEAVR + E+ VISFDG+YVN
Sbjct: 502 LLETDGTALLRVLSERHIDPRRTSSNDICEIFEVLGIEAVRKAIQREMHNVISFDGSYVN 561
Query: 531 YRHLSVL 551
YRHL++L
Sbjct: 562 YRHLALL 568
[133][TOP]
>UniRef100_A1YIA7 DNA-directed RNA polymerase (Fragment) n=1 Tax=Pichia kudriavzevii
RepID=A1YIA7_ISSOR
Length = 1647
Score = 142 bits (358), Expect = 2e-32
Identities = 82/183 (44%), Positives = 110/183 (60%)
Frame = +3
Query: 6 RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
+I +FG DL V+ SEDNA +LVIR R+ E + A E
Sbjct: 1139 KIMENFGDDLFVIWSEDNADKLVIRCRIVREEK-----------------------ALDE 1175
Query: 186 DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQDNKIVIDSVTGSFTKENEWLLETD 365
+EED ED L+ +E+Q+L ++TL G+ GI +VFM + +K I + G F K+ EW+LETD
Sbjct: 1176 EEEDTEDGLLKALEAQMLESITLRGVSGISRVFMMKYDKTYI-AEDGDFAKKQEWVLETD 1234
Query: 366 GVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNYRHLS 545
G+N V+ E +D TRT SN VE V GIEA R+ L EI VI+FDG+YVNYRHL+
Sbjct: 1235 GINLADVITVEGIDTTRTYSNSFVEILFVFGIEAARSALYKEILNVIAFDGSYVNYRHLA 1294
Query: 546 VLV 554
+LV
Sbjct: 1295 LLV 1297
[134][TOP]
>UniRef100_Q6E225 DNA-directed RNA polymerase (Fragment) n=1 Tax=Caenorhabditis sp.
SB341 RepID=Q6E225_9PELO
Length = 622
Score = 142 bits (357), Expect = 2e-32
Identities = 86/187 (45%), Positives = 117/187 (62%), Gaps = 4/187 (2%)
Frame = +3
Query: 3 NRIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEM 182
++IH+ FG DLHV+ ++DNA LV R+R+A +DK+ SD+ E+ D+ M
Sbjct: 442 DKIHSGFGNDLHVIYNDDNADHLVFRLRIA--GDDKS--SDA------QEEQVDK----M 487
Query: 183 EDEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQ----DNKIVIDSVTGSFTKENEW 350
ED D FLR +E+ +LS+L+L GIP I K +M + D K +I + G F EW
Sbjct: 488 ED-----DXFLRCIEANMLSDLSLQGIPAILKGYMYKPTTDDKKRIIITPEGGFKAIPEW 542
Query: 351 LLETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVN 530
+LETDG + V+ +D RT SNDI E FEVLGIEAVR + E+ VISFDG+YVN
Sbjct: 543 ILETDGTALLRVLSERHIDPVRTSSNDICEIFEVLGIEAVRKAIEREMHNVISFDGSYVN 602
Query: 531 YRHLSVL 551
YRHL++L
Sbjct: 603 YRHLALL 609
[135][TOP]
>UniRef100_B7PJA3 DNA-directed RNA polymerase (Fragment) n=1 Tax=Ixodes scapularis
RepID=B7PJA3_IXOSC
Length = 1937
Score = 142 bits (357), Expect = 2e-32
Identities = 85/186 (45%), Positives = 118/186 (63%), Gaps = 4/186 (2%)
Frame = +3
Query: 6 RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
+I+A FG DL+ + ++DNA +LV+R+R+ M N D +K + E+EQ +ME
Sbjct: 1234 KINAGFGDDLNCIFNDDNAEKLVLRIRI-MNN-------DGSKYQDEEEQ-----VDKME 1280
Query: 186 DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMR----QDNKIVIDSVTGSFTKENEWL 353
D D+FLR +E+ +LS++TL GI I KV+M + K ++ + TG F EWL
Sbjct: 1281 D-----DVFLRCIEANMLSDMTLQGIEAITKVYMHLPTTDNKKRIVLTETGEFKAIAEWL 1335
Query: 354 LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
LETDG + + V+ DVD RT SNDI E F VLGIEAVR + E+ VISFDG+YVNY
Sbjct: 1336 LETDGTSLMRVLSERDVDPVRTYSNDICEIFAVLGIEAVRKAVEKEMNHVISFDGSYVNY 1395
Query: 534 RHLSVL 551
RHL++L
Sbjct: 1396 RHLALL 1401
[136][TOP]
>UniRef100_A7S8F9 DNA-directed RNA polymerase n=1 Tax=Nematostella vectensis
RepID=A7S8F9_NEMVE
Length = 1929
Score = 141 bits (356), Expect = 3e-32
Identities = 81/186 (43%), Positives = 117/186 (62%), Gaps = 4/186 (2%)
Frame = +3
Query: 6 RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
+I+ FG DL+ + ++DNA +LV+R+R+ M N+D + +D++D D+ M+
Sbjct: 1230 KINLGFGDDLNCIFNDDNAEKLVLRIRI-MNNDDG---------KMQDDEDVDK----MD 1275
Query: 186 DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMR----QDNKIVIDSVTGSFTKENEWL 353
D D+FLR +E+ +L+++TL GI I KV+M K ++ + G F EWL
Sbjct: 1276 D-----DVFLRCIEANMLTDMTLQGIESISKVYMNLPHEDKKKRIVVTEQGEFKAIQEWL 1330
Query: 354 LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
LETDGV+ + V+ DVD RT SNDI E F VLGIEAVR + E+ VISFDG+YVNY
Sbjct: 1331 LETDGVSLMRVLSERDVDPVRTTSNDICEIFSVLGIEAVRKAVEREMDHVISFDGSYVNY 1390
Query: 534 RHLSVL 551
RHL++L
Sbjct: 1391 RHLALL 1396
[137][TOP]
>UniRef100_Q6CBQ3 DNA-directed RNA polymerase n=1 Tax=Yarrowia lipolytica
RepID=Q6CBQ3_YARLI
Length = 1750
Score = 141 bits (356), Expect = 3e-32
Identities = 79/183 (43%), Positives = 109/183 (59%)
Frame = +3
Query: 6 RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
+I + +G DL VM SEDNA +L+IR RV + + E++ DA+
Sbjct: 1219 KISSSYGEDLFVMWSEDNADKLIIRCRVVRDPKT-----------LEEDVDAE------- 1260
Query: 186 DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQDNKIVIDSVTGSFTKENEWLLETD 365
ED L+++E +L +++L GI GID+VFM + V D VTG + + EW+LETD
Sbjct: 1261 -----EDQMLKRIEGHMLDSISLRGIEGIDRVFMMEHKMSVPDEVTGDYKTKMEWVLETD 1315
Query: 366 GVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNYRHLS 545
G+N VM + VD RT SN VE VLGIEA R+ L EI VI+FDG+YVNYRH++
Sbjct: 1316 GINLAEVMAVDGVDPYRTYSNSFVEVLSVLGIEATRSALYREILNVIAFDGSYVNYRHMA 1375
Query: 546 VLV 554
+LV
Sbjct: 1376 LLV 1378
[138][TOP]
>UniRef100_UPI00019270E9 PREDICTED: similar to DNA-directed RNA polymerase II subunit RPB1
isoform 2 n=1 Tax=Hydra magnipapillata
RepID=UPI00019270E9
Length = 2014
Score = 141 bits (355), Expect = 4e-32
Identities = 80/186 (43%), Positives = 115/186 (61%), Gaps = 4/186 (2%)
Frame = +3
Query: 6 RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
+I+ FG DL+ + ++DNA +LV+R+R+ +D + EDE+ D+ ME
Sbjct: 1234 KINQGFGDDLNCIYNDDNAEKLVLRIRIMGSGDDSKNM--------EDEEQLDK----ME 1281
Query: 186 DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMR----QDNKIVIDSVTGSFTKENEWL 353
D D+FLR +E+ +L+++TL GI I KV+M + K VI + G F EW+
Sbjct: 1282 D-----DVFLRCIEANMLTDMTLQGIESIAKVYMHLPSEESKKRVIFNAEGEFKHLQEWI 1336
Query: 354 LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
LETDG + V+ +D+D RT SNDI E F +LGIEAVR ++ E+ VISFDG+YVNY
Sbjct: 1337 LETDGNGLMKVLSQKDIDPVRTTSNDICEIFSILGIEAVRKSIEKEMDHVISFDGSYVNY 1396
Query: 534 RHLSVL 551
RHLS+L
Sbjct: 1397 RHLSLL 1402
[139][TOP]
>UniRef100_UPI00019270BB PREDICTED: similar to DNA-directed RNA polymerase II subunit RPB1
isoform 1 n=1 Tax=Hydra magnipapillata
RepID=UPI00019270BB
Length = 2041
Score = 141 bits (355), Expect = 4e-32
Identities = 80/186 (43%), Positives = 115/186 (61%), Gaps = 4/186 (2%)
Frame = +3
Query: 6 RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
+I+ FG DL+ + ++DNA +LV+R+R+ +D + EDE+ D+ ME
Sbjct: 1235 KINQGFGDDLNCIYNDDNAEKLVLRIRIMGSGDDSKNM--------EDEEQLDK----ME 1282
Query: 186 DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMR----QDNKIVIDSVTGSFTKENEWL 353
D D+FLR +E+ +L+++TL GI I KV+M + K VI + G F EW+
Sbjct: 1283 D-----DVFLRCIEANMLTDMTLQGIESIAKVYMHLPSEESKKRVIFNAEGEFKHLQEWI 1337
Query: 354 LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
LETDG + V+ +D+D RT SNDI E F +LGIEAVR ++ E+ VISFDG+YVNY
Sbjct: 1338 LETDGNGLMKVLSQKDIDPVRTTSNDICEIFSILGIEAVRKSIEKEMDHVISFDGSYVNY 1397
Query: 534 RHLSVL 551
RHLS+L
Sbjct: 1398 RHLSLL 1403
[140][TOP]
>UniRef100_Q6E226 DNA-directed RNA polymerase (Fragment) n=1 Tax=Caenorhabditis
plicata RepID=Q6E226_9PELO
Length = 636
Score = 141 bits (355), Expect = 4e-32
Identities = 83/186 (44%), Positives = 112/186 (60%), Gaps = 4/186 (2%)
Frame = +3
Query: 6 RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
RIHA FG D+ + ++DNA +LV R+R+A +++ G E+ D+ ME
Sbjct: 443 RIHAGFGNDVKTIYTDDNADKLVFRLRIAGDDKMAEG----------QEEQVDK----ME 488
Query: 186 DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQ----DNKIVIDSVTGSFTKENEWL 353
D D+FLR +ES +L++LTL GIP I KV++ + D K I + G F EW+
Sbjct: 489 D-----DVFLRCIESNMLADLTLQGIPAIAKVYLNKPQSDDKKRTIITPEGGFKSIAEWI 543
Query: 354 LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
LETDG V+ +D RT SNDI E FEVLGIEAVR + E+ VISFDG+YVNY
Sbjct: 544 LETDGTALQRVLSEPQIDPVRTTSNDICEIFEVLGIEAVRKAIEREMHNVISFDGSYVNY 603
Query: 534 RHLSVL 551
RHL++L
Sbjct: 604 RHLALL 609
[141][TOP]
>UniRef100_A9QMS1 RNA polymerase 2 (Fragment) n=1 Tax=Rhabditoides regina
RepID=A9QMS1_9BILA
Length = 426
Score = 141 bits (355), Expect = 4e-32
Identities = 86/187 (45%), Positives = 113/187 (60%), Gaps = 4/187 (2%)
Frame = +3
Query: 3 NRIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEM 182
+RIH FG DL+V+ + A +LV R+R+ ++EDK E E+ D+ M
Sbjct: 234 DRIHQGFGDDLNVIYTXXXADKLVFRLRITNQSEDKG----------ETEEQVDK----M 279
Query: 183 EDEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQ----DNKIVIDSVTGSFTKENEW 350
ED D+FLR +ES +LS+LTL GI I KV+M + D K ++ + G F EW
Sbjct: 280 ED-----DVFLRCIESNMLSDLTLQGIEAIAKVYMHKPTTDDKKRMVITPEGGFKAIPEW 334
Query: 351 LLETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVN 530
LLETDG + V+ VD RT SNDI E FEVLGIEAVR + E+ VISFDG+YVN
Sbjct: 335 LLETDGTALLRVLAESAVDPIRTSSNDICEIFEVLGIEAVRKGIEREMHQVISFDGSYVN 394
Query: 531 YRHLSVL 551
YRHL++L
Sbjct: 395 YRHLALL 401
[142][TOP]
>UniRef100_A9QMR7 DNA-directed RNA polymerase (Fragment) n=1 Tax=Bunonema reticulatum
RepID=A9QMR7_9BILA
Length = 614
Score = 141 bits (355), Expect = 4e-32
Identities = 81/185 (43%), Positives = 110/185 (59%), Gaps = 4/185 (2%)
Frame = +3
Query: 9 IHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEMED 188
I FG DL+++ ++DNA +LVIR+R+A DA++ A E +
Sbjct: 430 IRRGFGDDLNIVYTDDNAEKLVIRIRIA-------------------NSDAEKGATEEQV 470
Query: 189 EEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQ----DNKIVIDSVTGSFTKENEWLL 356
++ +D FLR +E+ +LS LTL GI I KV+M + D K ++ + G F EWLL
Sbjct: 471 DKMEDDGFLRCIEANMLSELTLQGIESITKVYMHKPTTDDKKRMVITPEGGFKAVAEWLL 530
Query: 357 ETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNYR 536
ETDG + V+ DVD RT SNDI E F VLGIEAVR + E+ VISFDG+YVNYR
Sbjct: 531 ETDGTALLKVLSDRDVDPVRTTSNDICEIFAVLGIEAVRKAIEREMHQVISFDGSYVNYR 590
Query: 537 HLSVL 551
HL++L
Sbjct: 591 HLALL 595
[143][TOP]
>UniRef100_B3RM26 DNA-directed RNA polymerase n=1 Tax=Trichoplax adhaerens
RepID=B3RM26_TRIAD
Length = 1784
Score = 140 bits (354), Expect = 5e-32
Identities = 83/186 (44%), Positives = 119/186 (63%), Gaps = 4/186 (2%)
Frame = +3
Query: 6 RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
+I+A FG DL+ + ++DNA +L++R+R+ + N++K G+ D D M+
Sbjct: 1213 KINAGFGEDLNCIFNDDNAEKLILRIRI-VNNDNKEGV------------DRDEQWDRMD 1259
Query: 186 DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMR---QDNKI-VIDSVTGSFTKENEWL 353
D D+FLR +ES +LS++TL GI I KV+M QD+K +I + G + EW+
Sbjct: 1260 D-----DVFLRCIESNMLSDMTLQGIEQISKVYMHLPLQDSKKRMIINEEGEYKAIQEWI 1314
Query: 354 LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
LETDGVN V+ +DVD ++ SNDIVE F VLGIEAVR + E+ VISFDG+YVNY
Sbjct: 1315 LETDGVNLQKVLSVKDVDAVKSTSNDIVEIFSVLGIEAVRKAVEKEMNHVISFDGSYVNY 1374
Query: 534 RHLSVL 551
RHL++L
Sbjct: 1375 RHLALL 1380
[144][TOP]
>UniRef100_B3L428 DNA-directed RNA polymerase n=1 Tax=Plasmodium knowlesi strain H
RepID=B3L428_PLAKH
Length = 2353
Score = 140 bits (354), Expect = 5e-32
Identities = 69/121 (57%), Positives = 87/121 (71%)
Frame = +3
Query: 189 EEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQDNKIVIDSVTGSFTKENEWLLETDG 368
+ED ED FL+K+ Q LS L L GI I KV+MR+++KI DS G F + + W+L+TDG
Sbjct: 1735 KEDTEDTFLKKLMEQCLSTLKLRGIENITKVYMREESKITYDSNNGKFVRSSHWVLDTDG 1794
Query: 369 VNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNYRHLSV 548
N + VD+ +T+SNDIVE FEVLGIEAVR LL E+RTVISFD +YVNYRHLS+
Sbjct: 1795 CNLEHIFCAPHVDYKKTISNDIVEIFEVLGIEAVRRALLKELRTVISFDSSYVNYRHLSI 1854
Query: 549 L 551
L
Sbjct: 1855 L 1855
[145][TOP]
>UniRef100_A9UED6 RNA polymerase 2 largest subunit (Fragment) n=1 Tax=Diploscapter
sp. JU359 RepID=A9UED6_9BILA
Length = 374
Score = 140 bits (354), Expect = 5e-32
Identities = 83/187 (44%), Positives = 112/187 (59%), Gaps = 4/187 (2%)
Frame = +3
Query: 3 NRIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEM 182
++IH F DL+V+ ++DNA +LV R+R+ ++E +E+ D+ M
Sbjct: 193 DKIHEGFRDDLNVIYTDDNAEKLVFRLRITTQDEKNT-----------EEEQIDK----M 237
Query: 183 EDEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQ----DNKIVIDSVTGSFTKENEW 350
ED D FLR +E+ +LS+LTL GI I KV+M + D K +I S G F EW
Sbjct: 238 ED-----DTFLRAIEASMLSDLTLQGISSIAKVYMHKPTTDDKKKIIISPEGGFKAIPEW 292
Query: 351 LLETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVN 530
LLETDG + V+ +D RT SNDI E FEVLGIEAVR + E+ VISFDG+YVN
Sbjct: 293 LLETDGTALLRVLSERHIDPKRTSSNDICEIFEVLGIEAVRKAIQREMHNVISFDGSYVN 352
Query: 531 YRHLSVL 551
YRHL++L
Sbjct: 353 YRHLALL 359
[146][TOP]
>UniRef100_A9QMQ8 RNA polymerase 2 (Fragment) n=1 Tax=Phasmarhabditis sp. EM434
RepID=A9QMQ8_9BILA
Length = 204
Score = 140 bits (354), Expect = 5e-32
Identities = 81/186 (43%), Positives = 116/186 (62%), Gaps = 4/186 (2%)
Frame = +3
Query: 6 RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
+++ FG DL+V+ ++DNA +LV R+R++ ++ +A +E+ D+ ME
Sbjct: 26 KVNQGFGDDLNVIYTDDNADKLVFRLRISATDDKQA-----------EEEQVDK----ME 70
Query: 186 DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQ----DNKIVIDSVTGSFTKENEWL 353
D D+FLR +E+ +LS+L L GIP I KV+M + D K VI + G F EW+
Sbjct: 71 D-----DVFLRCIEANMLSDLALQGIPQISKVYMHKPTTDDKKRVIITPEGGFKAIAEWI 125
Query: 354 LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
LETDG + V+ +D RT SNDI E FEVLGIEAVR ++ E+ VISFDG+YVNY
Sbjct: 126 LETDGTALLKVLSERHIDPIRTTSNDICEIFEVLGIEAVRKSIEREMNNVISFDGSYVNY 185
Query: 534 RHLSVL 551
RHL++L
Sbjct: 186 RHLALL 191
[147][TOP]
>UniRef100_Q25203 DNA-directed RNA polymerase (Fragment) n=1 Tax=Ilyanassa obsoleta
RepID=Q25203_9CAEN
Length = 1343
Score = 140 bits (353), Expect = 6e-32
Identities = 82/186 (44%), Positives = 112/186 (60%), Gaps = 4/186 (2%)
Frame = +3
Query: 6 RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
+I A FG DL+ + ++DNA +LV+R+R+ ++ K QD + V +ME
Sbjct: 1148 KITAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKM-------------QDEEEVVDKME 1194
Query: 186 DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMR----QDNKIVIDSVTGSFTKENEWL 353
D D+FLR +ES LLS++TL GI I KV+M D K + + G F EW+
Sbjct: 1195 D-----DVFLRCIESNLLSDMTLQGIEAIAKVYMHLPTTDDKKRIHITEEGEFKAVAEWI 1249
Query: 354 LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
LETDG + + V+ DVD RT +NDIVE F LGIEAVR + E+ VISFDG+YVNY
Sbjct: 1250 LETDGSSLMKVLSERDVDPVRTYTNDIVEVFATLGIEAVRKAIEREMVHVISFDGSYVNY 1309
Query: 534 RHLSVL 551
RHL++L
Sbjct: 1310 RHLALL 1315
[148][TOP]
>UniRef100_UPI00003BD271 hypothetical protein DEHA0A14036g n=1 Tax=Debaryomyces hansenii
CBS767 RepID=UPI00003BD271
Length = 1749
Score = 140 bits (352), Expect = 8e-32
Identities = 79/183 (43%), Positives = 109/183 (59%)
Frame = +3
Query: 6 RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
+I +FG DL V+ S+D A +L+IR RV + P+ DE
Sbjct: 1221 KISQNFGEDLFVIWSDDTADKLIIRCRVVRD------------PKSLDE----------- 1257
Query: 186 DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQDNKIVIDSVTGSFTKENEWLLETD 365
D + ED L+++ES +L +++L GIPGI +VFM Q +K+ +TG F + EW+LETD
Sbjct: 1258 DADAEEDQILKRIESHMLESISLRGIPGITRVFMMQ-HKVNSPDITGEFKQSQEWVLETD 1316
Query: 366 GVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNYRHLS 545
GVN VM VD +RT SN+ +E VLGIEA R L EI VI+FDG+YVNYRH++
Sbjct: 1317 GVNLADVMAVSGVDSSRTYSNNFIEVLSVLGIEATRTALFKEILNVIAFDGSYVNYRHMA 1376
Query: 546 VLV 554
+LV
Sbjct: 1377 LLV 1379
[149][TOP]
>UniRef100_Q9XZU9 DNA-directed RNA polymerase n=1 Tax=Drosophila subobscura
RepID=Q9XZU9_DROSU
Length = 1889
Score = 140 bits (352), Expect = 8e-32
Identities = 81/186 (43%), Positives = 116/186 (62%), Gaps = 4/186 (2%)
Frame = +3
Query: 6 RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
+I+ FG DL+ + ++DNA +LV+R+R+ M NE+ +F+DE +A +ME
Sbjct: 1226 KINVGFGEDLNCIFNDDNADKLVLRIRI-MNNEEN---------KFQDEDEA---VDKME 1272
Query: 186 DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMR----QDNKIVIDSVTGSFTKENEWL 353
D D+FLR +E+ +LS++TL GI I KV+M K ++ + TG F EWL
Sbjct: 1273 D-----DMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIVITETGEFKAIGEWL 1327
Query: 354 LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
LETDG + + V+ DVD RT SNDI E F+VLGIEAVR ++ E+ V+ F G YVNY
Sbjct: 1328 LETDGTSMMKVLSERDVDPVRTSSNDICEIFQVLGIEAVRKSVEKEMNAVLQFYGLYVNY 1387
Query: 534 RHLSVL 551
RHL++L
Sbjct: 1388 RHLALL 1393
[150][TOP]
>UniRef100_Q9XZS2 DNA-directed RNA polymerase n=1 Tax=Drosophila madeirensis
RepID=Q9XZS2_DROMD
Length = 1889
Score = 140 bits (352), Expect = 8e-32
Identities = 81/186 (43%), Positives = 116/186 (62%), Gaps = 4/186 (2%)
Frame = +3
Query: 6 RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
+I+ FG DL+ + ++DNA +LV+R+R+ M NE+ +F+DE +A +ME
Sbjct: 1226 KINVGFGEDLNCIFNDDNADKLVLRIRI-MNNEEN---------KFQDEDEA---VDKME 1272
Query: 186 DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMR----QDNKIVIDSVTGSFTKENEWL 353
D D+FLR +E+ +LS++TL GI I KV+M K ++ + TG F EWL
Sbjct: 1273 D-----DMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIVITETGEFKAIGEWL 1327
Query: 354 LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
LETDG + + V+ DVD RT SNDI E F+VLGIEAVR ++ E+ V+ F G YVNY
Sbjct: 1328 LETDGTSMMKVLSERDVDPVRTSSNDICEIFQVLGIEAVRKSVEKEMNAVLQFYGLYVNY 1387
Query: 534 RHLSVL 551
RHL++L
Sbjct: 1388 RHLALL 1393
[151][TOP]
>UniRef100_C4QEL8 DNA-directed RNA polymerase n=1 Tax=Schistosoma mansoni
RepID=C4QEL8_SCHMA
Length = 1785
Score = 140 bits (352), Expect = 8e-32
Identities = 86/187 (45%), Positives = 113/187 (60%), Gaps = 4/187 (2%)
Frame = +3
Query: 3 NRIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEM 182
++I FG DL +DN +LV+R+R+ + +K D +DAD + +M
Sbjct: 1123 DKITRAFGNDLICHIPDDNL-KLVMRIRIMNSDLEK------------DFKDADTTSDKM 1169
Query: 183 EDEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMR----QDNKIVIDSVTGSFTKENEW 350
ED D FLR +E+ LL+++TL GIP I KV+M QD K V+ GSF EW
Sbjct: 1170 ED-----DTFLRFIEANLLTDITLQGIPQITKVYMHLPKTQDKKRVVIKDDGSFDTVAEW 1224
Query: 351 LLETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVN 530
+LETDG + V+ DVD RTVSNDIVE FE LGIEAVR + E+ VISFDG+YVN
Sbjct: 1225 MLETDGTCLMRVLAERDVDPVRTVSNDIVEIFEALGIEAVRKAIECEMHHVISFDGSYVN 1284
Query: 531 YRHLSVL 551
YRHL++L
Sbjct: 1285 YRHLALL 1291
[152][TOP]
>UniRef100_B5RSM9 DNA-directed RNA polymerase n=1 Tax=Debaryomyces hansenii
RepID=B5RSM9_DEBHA
Length = 1749
Score = 140 bits (352), Expect = 8e-32
Identities = 79/183 (43%), Positives = 109/183 (59%)
Frame = +3
Query: 6 RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
+I +FG DL V+ S+D A +L+IR RV + P+ DE
Sbjct: 1221 KISQNFGEDLFVIWSDDTADKLIIRCRVVRD------------PKSLDE----------- 1257
Query: 186 DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQDNKIVIDSVTGSFTKENEWLLETD 365
D + ED L+++ES +L +++L GIPGI +VFM Q +K+ +TG F + EW+LETD
Sbjct: 1258 DADAEEDQILKRIESHMLESISLRGIPGITRVFMMQ-HKVNSPDITGEFKQSQEWVLETD 1316
Query: 366 GVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNYRHLS 545
GVN VM VD +RT SN+ +E VLGIEA R L EI VI+FDG+YVNYRH++
Sbjct: 1317 GVNLADVMAVSGVDSSRTYSNNFIEVLSVLGIEATRTALFKEILNVIAFDGSYVNYRHMA 1376
Query: 546 VLV 554
+LV
Sbjct: 1377 LLV 1379
[153][TOP]
>UniRef100_Q9XZU8 DNA-directed RNA polymerase (Fragment) n=1 Tax=Drosophila
pseudoobscura pseudoobscura RepID=Q9XZU8_DROPS
Length = 1811
Score = 139 bits (351), Expect = 1e-31
Identities = 81/186 (43%), Positives = 116/186 (62%), Gaps = 4/186 (2%)
Frame = +3
Query: 6 RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
+I+ FG DL+ + ++DNA +LV+R+R+ M NE+ +F+DE +A +ME
Sbjct: 1148 KINVGFGEDLNCIFNDDNADKLVLRIRI-MNNEEN---------KFQDEDEA---VDKME 1194
Query: 186 DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMR----QDNKIVIDSVTGSFTKENEWL 353
D D+FLR +E+ +LS++TL GI I KV+M K ++ + TG F EWL
Sbjct: 1195 D-----DMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIVITETGEFKAIGEWL 1249
Query: 354 LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
LETDG + + V+ DVD RT SNDI E F+VLGIEAVR ++ E+ V+ F G YVNY
Sbjct: 1250 LETDGTSMMKVLSERDVDPIRTSSNDICEIFQVLGIEAVRKSVEKEMNAVLQFYGLYVNY 1309
Query: 534 RHLSVL 551
RHL++L
Sbjct: 1310 RHLALL 1315
[154][TOP]
>UniRef100_Q9XZS1 DNA-directed RNA polymerase n=1 Tax=Drosophila guanche
RepID=Q9XZS1_DROGU
Length = 1889
Score = 139 bits (351), Expect = 1e-31
Identities = 81/186 (43%), Positives = 116/186 (62%), Gaps = 4/186 (2%)
Frame = +3
Query: 6 RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
+I+ FG DL+ + ++DNA +LV+R+R+ M NE+ +F+DE +A +ME
Sbjct: 1226 KINVGFGEDLNCIFNDDNADKLVLRIRI-MNNEEN---------KFQDEDEA---VDKME 1272
Query: 186 DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMR----QDNKIVIDSVTGSFTKENEWL 353
D D+FLR +E+ +LS++TL GI I KV+M K ++ + TG F EWL
Sbjct: 1273 D-----DMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIVITETGEFKAIGEWL 1327
Query: 354 LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
LETDG + + V+ DVD RT SNDI E F+VLGIEAVR ++ E+ V+ F G YVNY
Sbjct: 1328 LETDGTSMMKVLSERDVDPIRTSSNDICEIFQVLGIEAVRKSVEKEMNAVLQFYGLYVNY 1387
Query: 534 RHLSVL 551
RHL++L
Sbjct: 1388 RHLALL 1393
[155][TOP]
>UniRef100_Q29IN2 DNA-directed RNA polymerase n=1 Tax=Drosophila pseudoobscura
pseudoobscura RepID=Q29IN2_DROPS
Length = 1889
Score = 139 bits (351), Expect = 1e-31
Identities = 81/186 (43%), Positives = 116/186 (62%), Gaps = 4/186 (2%)
Frame = +3
Query: 6 RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
+I+ FG DL+ + ++DNA +LV+R+R+ M NE+ +F+DE +A +ME
Sbjct: 1226 KINVGFGEDLNCIFNDDNADKLVLRIRI-MNNEEN---------KFQDEDEA---VDKME 1272
Query: 186 DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMR----QDNKIVIDSVTGSFTKENEWL 353
D D+FLR +E+ +LS++TL GI I KV+M K ++ + TG F EWL
Sbjct: 1273 D-----DMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIVITETGEFKAIGEWL 1327
Query: 354 LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
LETDG + + V+ DVD RT SNDI E F+VLGIEAVR ++ E+ V+ F G YVNY
Sbjct: 1328 LETDGTSMMKVLSERDVDPIRTSSNDICEIFQVLGIEAVRKSVEKEMNAVLQFYGLYVNY 1387
Query: 534 RHLSVL 551
RHL++L
Sbjct: 1388 RHLALL 1393
[156][TOP]
>UniRef100_Q1WKU4 Putative RNA polymerase II 215 kD subunit (Fragment) n=1
Tax=Drosophila erecta RepID=Q1WKU4_DROER
Length = 760
Score = 139 bits (351), Expect = 1e-31
Identities = 81/186 (43%), Positives = 116/186 (62%), Gaps = 4/186 (2%)
Frame = +3
Query: 6 RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
+I+ FG DL+ + ++DNA +LV+R+R+ M NE+ +F+DE +A +ME
Sbjct: 368 KINVGFGEDLNCIFNDDNADKLVLRIRI-MNNEEN---------KFQDEDEA---VDKME 414
Query: 186 DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMR----QDNKIVIDSVTGSFTKENEWL 353
D D+FLR +E+ +LS++TL GI I KV+M K ++ + TG F EWL
Sbjct: 415 D-----DMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIVITETGEFKAIGEWL 469
Query: 354 LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
LETDG + + V+ DVD RT SNDI E F+VLGIEAVR ++ E+ V+ F G YVNY
Sbjct: 470 LETDGTSMMKVLSERDVDPIRTSSNDICEIFQVLGIEAVRKSVEKEMNAVLQFYGLYVNY 529
Query: 534 RHLSVL 551
RHL++L
Sbjct: 530 RHLALL 535
[157][TOP]
>UniRef100_Q1WKU3 Putative RNA polymerase II 215 kD subunit (Fragment) n=1
Tax=Drosophila orena RepID=Q1WKU3_DROOR
Length = 750
Score = 139 bits (351), Expect = 1e-31
Identities = 81/186 (43%), Positives = 116/186 (62%), Gaps = 4/186 (2%)
Frame = +3
Query: 6 RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
+I+ FG DL+ + ++DNA +LV+R+R+ M NE+ +F+DE +A +ME
Sbjct: 368 KINVGFGEDLNCIFNDDNADKLVLRIRI-MNNEEN---------KFQDEDEA---VDKME 414
Query: 186 DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMR----QDNKIVIDSVTGSFTKENEWL 353
D D+FLR +E+ +LS++TL GI I KV+M K ++ + TG F EWL
Sbjct: 415 D-----DMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIVITETGEFKAIGEWL 469
Query: 354 LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
LETDG + + V+ DVD RT SNDI E F+VLGIEAVR ++ E+ V+ F G YVNY
Sbjct: 470 LETDGTSMMKVLSERDVDPIRTSSNDICEIFQVLGIEAVRKSVEKEMNAVLQFYGLYVNY 529
Query: 534 RHLSVL 551
RHL++L
Sbjct: 530 RHLALL 535
[158][TOP]
>UniRef100_Q1WKU2 Putative RNA polymerase II 215 kD subunit (Fragment) n=1
Tax=Drosophila simulans RepID=Q1WKU2_DROSI
Length = 746
Score = 139 bits (351), Expect = 1e-31
Identities = 81/186 (43%), Positives = 116/186 (62%), Gaps = 4/186 (2%)
Frame = +3
Query: 6 RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
+I+ FG DL+ + ++DNA +LV+R+R+ M NE+ +F+DE +A +ME
Sbjct: 368 KINVGFGEDLNCIFNDDNADKLVLRIRI-MNNEEN---------KFQDEDEA---VDKME 414
Query: 186 DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMR----QDNKIVIDSVTGSFTKENEWL 353
D D+FLR +E+ +LS++TL GI I KV+M K ++ + TG F EWL
Sbjct: 415 D-----DMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIVITETGEFKAIGEWL 469
Query: 354 LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
LETDG + + V+ DVD RT SNDI E F+VLGIEAVR ++ E+ V+ F G YVNY
Sbjct: 470 LETDGTSMMKVLSERDVDPIRTSSNDICEIFQVLGIEAVRKSVEKEMNAVLQFYGLYVNY 529
Query: 534 RHLSVL 551
RHL++L
Sbjct: 530 RHLALL 535
[159][TOP]
>UniRef100_Q1WKU0 Putative RNA polymerase II 215 kD subunit (Fragment) n=2
Tax=melanogaster subgroup RepID=Q1WKU0_DROYA
Length = 766
Score = 139 bits (351), Expect = 1e-31
Identities = 81/186 (43%), Positives = 116/186 (62%), Gaps = 4/186 (2%)
Frame = +3
Query: 6 RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
+I+ FG DL+ + ++DNA +LV+R+R+ M NE+ +F+DE +A +ME
Sbjct: 368 KINVGFGEDLNCIFNDDNADKLVLRIRI-MNNEEN---------KFQDEDEA---VDKME 414
Query: 186 DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMR----QDNKIVIDSVTGSFTKENEWL 353
D D+FLR +E+ +LS++TL GI I KV+M K ++ + TG F EWL
Sbjct: 415 D-----DMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIVITETGEFKAIGEWL 469
Query: 354 LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
LETDG + + V+ DVD RT SNDI E F+VLGIEAVR ++ E+ V+ F G YVNY
Sbjct: 470 LETDGTSMMKVLSERDVDPIRTSSNDICEIFQVLGIEAVRKSVEKEMNAVLQFYGLYVNY 529
Query: 534 RHLSVL 551
RHL++L
Sbjct: 530 RHLALL 535
[160][TOP]
>UniRef100_B6AG69 DNA-directed RNA polymerase n=1 Tax=Cryptosporidium muris RN66
RepID=B6AG69_9CRYT
Length = 1927
Score = 139 bits (351), Expect = 1e-31
Identities = 77/187 (41%), Positives = 117/187 (62%), Gaps = 4/187 (2%)
Frame = +3
Query: 3 NRIHAHFGGD-LHVMASEDNAAELVIRVRVAMENEDKAGISDS---TKPRFEDEQDADRV 170
++I F D L + ++DN+ ELV+R+R+ +G D+ ++ + +D
Sbjct: 1264 DKILMEFSNDELDCIWTDDNSDELVLRLRIKNLEPTNSGTQDTVMNSEFQIDDGHYQPPT 1323
Query: 171 AAEMEDEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQDNKIVIDSVTGSFTKENEW 350
+E+ + FL K+ ++ LS +TL GI I KV+M+++ D ++ ++N+W
Sbjct: 1324 PPVVEEHK-----FLEKLMTECLSQITLRGISNIKKVYMKEEQVTRYDILSQKIVRDNQW 1378
Query: 351 LLETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVN 530
+L+TDG N AV+ HE +D TRT+SNDI E F VLGIEAVR LL E+RTVISFDG+YVN
Sbjct: 1379 VLDTDGCNLEAVLCHEAIDSTRTISNDITEVFSVLGIEAVRRALLKELRTVISFDGSYVN 1438
Query: 531 YRHLSVL 551
YRHL++L
Sbjct: 1439 YRHLALL 1445
[161][TOP]
>UniRef100_B4PY98 DNA-directed RNA polymerase n=1 Tax=Drosophila yakuba
RepID=B4PY98_DROYA
Length = 1889
Score = 139 bits (351), Expect = 1e-31
Identities = 81/186 (43%), Positives = 116/186 (62%), Gaps = 4/186 (2%)
Frame = +3
Query: 6 RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
+I+ FG DL+ + ++DNA +LV+R+R+ M NE+ +F+DE +A +ME
Sbjct: 1226 KINVGFGEDLNCIFNDDNADKLVLRIRI-MNNEEN---------KFQDEDEA---VDKME 1272
Query: 186 DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMR----QDNKIVIDSVTGSFTKENEWL 353
D D+FLR +E+ +LS++TL GI I KV+M K ++ + TG F EWL
Sbjct: 1273 D-----DMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIVITETGEFKAIGEWL 1327
Query: 354 LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
LETDG + + V+ DVD RT SNDI E F+VLGIEAVR ++ E+ V+ F G YVNY
Sbjct: 1328 LETDGTSMMKVLSERDVDPIRTSSNDICEIFQVLGIEAVRKSVEKEMNAVLQFYGLYVNY 1387
Query: 534 RHLSVL 551
RHL++L
Sbjct: 1388 RHLALL 1393
[162][TOP]
>UniRef100_B4NDK9 DNA-directed RNA polymerase n=1 Tax=Drosophila willistoni
RepID=B4NDK9_DROWI
Length = 1890
Score = 139 bits (351), Expect = 1e-31
Identities = 81/186 (43%), Positives = 116/186 (62%), Gaps = 4/186 (2%)
Frame = +3
Query: 6 RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
+I+ FG DL+ + ++DNA +LV+R+R+ M NE+ +F+DE +A +ME
Sbjct: 1226 KINVGFGEDLNCIFNDDNADKLVLRIRI-MNNEEN---------KFQDEDEA---VDKME 1272
Query: 186 DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMR----QDNKIVIDSVTGSFTKENEWL 353
D D+FLR +E+ +LS++TL GI I KV+M K ++ + TG F EWL
Sbjct: 1273 D-----DMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIVITETGEFKAIGEWL 1327
Query: 354 LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
LETDG + + V+ DVD RT SNDI E F+VLGIEAVR ++ E+ V+ F G YVNY
Sbjct: 1328 LETDGTSMMKVLSERDVDPIRTSSNDICEIFQVLGIEAVRKSVEKEMNAVLQFYGLYVNY 1387
Query: 534 RHLSVL 551
RHL++L
Sbjct: 1388 RHLALL 1393
[163][TOP]
>UniRef100_B4MAN9 DNA-directed RNA polymerase n=1 Tax=Drosophila virilis
RepID=B4MAN9_DROVI
Length = 1889
Score = 139 bits (351), Expect = 1e-31
Identities = 81/186 (43%), Positives = 116/186 (62%), Gaps = 4/186 (2%)
Frame = +3
Query: 6 RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
+I+ FG DL+ + ++DNA +LV+R+R+ M NE+ +F+DE +A +ME
Sbjct: 1226 KINVGFGEDLNCIFNDDNADKLVLRIRI-MNNEEN---------KFQDEDEA---VDKME 1272
Query: 186 DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMR----QDNKIVIDSVTGSFTKENEWL 353
D D+FLR +E+ +LS++TL GI I KV+M K ++ + TG F EWL
Sbjct: 1273 D-----DMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIVITETGEFKAIGEWL 1327
Query: 354 LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
LETDG + + V+ DVD RT SNDI E F+VLGIEAVR ++ E+ V+ F G YVNY
Sbjct: 1328 LETDGTSMMKVLSERDVDPIRTSSNDICEIFQVLGIEAVRKSVEKEMNAVLQFYGLYVNY 1387
Query: 534 RHLSVL 551
RHL++L
Sbjct: 1388 RHLALL 1393
[164][TOP]
>UniRef100_B4L732 DNA-directed RNA polymerase n=1 Tax=Drosophila mojavensis
RepID=B4L732_DROMO
Length = 1889
Score = 139 bits (351), Expect = 1e-31
Identities = 81/186 (43%), Positives = 116/186 (62%), Gaps = 4/186 (2%)
Frame = +3
Query: 6 RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
+I+ FG DL+ + ++DNA +LV+R+R+ M NE+ +F+DE +A +ME
Sbjct: 1226 KINVGFGEDLNCIFNDDNADKLVLRIRI-MNNEEN---------KFQDEDEA---VDKME 1272
Query: 186 DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMR----QDNKIVIDSVTGSFTKENEWL 353
D D+FLR +E+ +LS++TL GI I KV+M K ++ + TG F EWL
Sbjct: 1273 D-----DMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIVITETGEFKAIGEWL 1327
Query: 354 LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
LETDG + + V+ DVD RT SNDI E F+VLGIEAVR ++ E+ V+ F G YVNY
Sbjct: 1328 LETDGTSMMKVLSERDVDPIRTSSNDICEIFQVLGIEAVRKSVEKEMNAVLQFYGLYVNY 1387
Query: 534 RHLSVL 551
RHL++L
Sbjct: 1388 RHLALL 1393
[165][TOP]
>UniRef100_B4JXA6 DNA-directed RNA polymerase n=1 Tax=Drosophila grimshawi
RepID=B4JXA6_DROGR
Length = 1889
Score = 139 bits (351), Expect = 1e-31
Identities = 81/186 (43%), Positives = 116/186 (62%), Gaps = 4/186 (2%)
Frame = +3
Query: 6 RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
+I+ FG DL+ + ++DNA +LV+R+R+ M NE+ +F+DE +A +ME
Sbjct: 1226 KINVGFGEDLNCIFNDDNADKLVLRIRI-MNNEEN---------KFQDEDEA---VDKME 1272
Query: 186 DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMR----QDNKIVIDSVTGSFTKENEWL 353
D D+FLR +E+ +LS++TL GI I KV+M K ++ + TG F EWL
Sbjct: 1273 D-----DMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIVITETGEFKAIGEWL 1327
Query: 354 LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
LETDG + + V+ DVD RT SNDI E F+VLGIEAVR ++ E+ V+ F G YVNY
Sbjct: 1328 LETDGTSMMKVLSERDVDPIRTSSNDICEIFQVLGIEAVRKSVEKEMNAVLQFYGLYVNY 1387
Query: 534 RHLSVL 551
RHL++L
Sbjct: 1388 RHLALL 1393
[166][TOP]
>UniRef100_B4H2R8 DNA-directed RNA polymerase n=1 Tax=Drosophila persimilis
RepID=B4H2R8_DROPE
Length = 1804
Score = 139 bits (351), Expect = 1e-31
Identities = 81/186 (43%), Positives = 116/186 (62%), Gaps = 4/186 (2%)
Frame = +3
Query: 6 RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
+I+ FG DL+ + ++DNA +LV+R+R+ M NE+ +F+DE +A +ME
Sbjct: 1226 KINVGFGEDLNCIFNDDNADKLVLRIRI-MNNEEN---------KFQDEDEA---VDKME 1272
Query: 186 DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMR----QDNKIVIDSVTGSFTKENEWL 353
D D+FLR +E+ +LS++TL GI I KV+M K ++ + TG F EWL
Sbjct: 1273 D-----DMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIVITETGEFKAIGEWL 1327
Query: 354 LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
LETDG + + V+ DVD RT SNDI E F+VLGIEAVR ++ E+ V+ F G YVNY
Sbjct: 1328 LETDGTSMMKVLSERDVDPIRTSSNDICEIFQVLGIEAVRKSVEKEMNAVLQFYGLYVNY 1387
Query: 534 RHLSVL 551
RHL++L
Sbjct: 1388 RHLALL 1393
[167][TOP]
>UniRef100_B3NUC1 DNA-directed RNA polymerase n=1 Tax=Drosophila erecta
RepID=B3NUC1_DROER
Length = 1889
Score = 139 bits (351), Expect = 1e-31
Identities = 81/186 (43%), Positives = 116/186 (62%), Gaps = 4/186 (2%)
Frame = +3
Query: 6 RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
+I+ FG DL+ + ++DNA +LV+R+R+ M NE+ +F+DE +A +ME
Sbjct: 1226 KINVGFGEDLNCIFNDDNADKLVLRIRI-MNNEEN---------KFQDEDEA---VDKME 1272
Query: 186 DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMR----QDNKIVIDSVTGSFTKENEWL 353
D D+FLR +E+ +LS++TL GI I KV+M K ++ + TG F EWL
Sbjct: 1273 D-----DMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIVITETGEFKAIGEWL 1327
Query: 354 LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
LETDG + + V+ DVD RT SNDI E F+VLGIEAVR ++ E+ V+ F G YVNY
Sbjct: 1328 LETDGTSMMKVLSERDVDPIRTSSNDICEIFQVLGIEAVRKSVEKEMNAVLQFYGLYVNY 1387
Query: 534 RHLSVL 551
RHL++L
Sbjct: 1388 RHLALL 1393
[168][TOP]
>UniRef100_B3MQ29 DNA-directed RNA polymerase n=1 Tax=Drosophila ananassae
RepID=B3MQ29_DROAN
Length = 1889
Score = 139 bits (351), Expect = 1e-31
Identities = 81/186 (43%), Positives = 116/186 (62%), Gaps = 4/186 (2%)
Frame = +3
Query: 6 RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
+I+ FG DL+ + ++DNA +LV+R+R+ M NE+ +F+DE +A +ME
Sbjct: 1226 KINVGFGEDLNCIFNDDNADKLVLRIRI-MNNEEN---------KFQDEDEA---VDKME 1272
Query: 186 DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMR----QDNKIVIDSVTGSFTKENEWL 353
D D+FLR +E+ +LS++TL GI I KV+M K ++ + TG F EWL
Sbjct: 1273 D-----DMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIVITETGEFKAIGEWL 1327
Query: 354 LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
LETDG + + V+ DVD RT SNDI E F+VLGIEAVR ++ E+ V+ F G YVNY
Sbjct: 1328 LETDGTSMMKVLSERDVDPIRTSSNDICEIFQVLGIEAVRKSVEKEMNAVLQFYGLYVNY 1387
Query: 534 RHLSVL 551
RHL++L
Sbjct: 1388 RHLALL 1393
[169][TOP]
>UniRef100_A9UNH9 DNA-directed RNA polymerase n=1 Tax=Drosophila melanogaster
RepID=A9UNH9_DROME
Length = 1887
Score = 139 bits (351), Expect = 1e-31
Identities = 81/186 (43%), Positives = 116/186 (62%), Gaps = 4/186 (2%)
Frame = +3
Query: 6 RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
+I+ FG DL+ + ++DNA +LV+R+R+ M NE+ +F+DE +A +ME
Sbjct: 1226 KINVGFGEDLNCIFNDDNADKLVLRIRI-MNNEEN---------KFQDEDEA---VDKME 1272
Query: 186 DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMR----QDNKIVIDSVTGSFTKENEWL 353
D D+FLR +E+ +LS++TL GI I KV+M K ++ + TG F EWL
Sbjct: 1273 D-----DMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIVITETGEFKAIGEWL 1327
Query: 354 LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
LETDG + + V+ DVD RT SNDI E F+VLGIEAVR ++ E+ V+ F G YVNY
Sbjct: 1328 LETDGTSMMKVLSERDVDPIRTSSNDICEIFQVLGIEAVRKSVEKEMNAVLQFYGLYVNY 1387
Query: 534 RHLSVL 551
RHL++L
Sbjct: 1388 RHLALL 1393
[170][TOP]
>UniRef100_Q5ACI7 DNA-directed RNA polymerase n=1 Tax=Candida albicans
RepID=Q5ACI7_CANAL
Length = 1728
Score = 139 bits (351), Expect = 1e-31
Identities = 80/183 (43%), Positives = 110/183 (60%)
Frame = +3
Query: 6 RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
+I +FG DL V+ S+D A +L+IR RV + P+ DE
Sbjct: 1216 KISQNFGEDLFVIWSDDTADKLIIRCRVVRD------------PKSLDE----------- 1252
Query: 186 DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQDNKIVIDSVTGSFTKENEWLLETD 365
D + ED L+++E+ +L +++L GIPGI +VFM Q +K+ TG F + EW+LETD
Sbjct: 1253 DADAEEDQILKRIEAHMLESISLRGIPGITRVFMMQ-HKVSHPDETGEFKQGKEWVLETD 1311
Query: 366 GVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNYRHLS 545
GVN VM VD TRT SND +E VLGIEA R++L EI VI+FDG+YVNYRH++
Sbjct: 1312 GVNLADVMAVPGVDSTRTYSNDFIEVLSVLGIEATRSSLYKEILNVIAFDGSYVNYRHMA 1371
Query: 546 VLV 554
+LV
Sbjct: 1372 LLV 1374
[171][TOP]
>UniRef100_C4YN85 DNA-directed RNA polymerase n=1 Tax=Candida albicans
RepID=C4YN85_CANAL
Length = 1742
Score = 139 bits (351), Expect = 1e-31
Identities = 80/183 (43%), Positives = 110/183 (60%)
Frame = +3
Query: 6 RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
+I +FG DL V+ S+D A +L+IR RV + P+ DE
Sbjct: 1216 KISQNFGEDLFVIWSDDTADKLIIRCRVVRD------------PKSLDE----------- 1252
Query: 186 DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQDNKIVIDSVTGSFTKENEWLLETD 365
D + ED L+++E+ +L +++L GIPGI +VFM Q +K+ TG F + EW+LETD
Sbjct: 1253 DADAEEDQILKRIEAHMLESISLRGIPGITRVFMMQ-HKVSHPDETGEFKQGKEWVLETD 1311
Query: 366 GVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNYRHLS 545
GVN VM VD TRT SND +E VLGIEA R++L EI VI+FDG+YVNYRH++
Sbjct: 1312 GVNLADVMAVPGVDSTRTYSNDFIEVLSVLGIEATRSSLYKEILNVIAFDGSYVNYRHMA 1371
Query: 546 VLV 554
+LV
Sbjct: 1372 LLV 1374
[172][TOP]
>UniRef100_P04052 DNA-directed RNA polymerase II subunit RPB1 n=2 Tax=Drosophila
melanogaster RepID=RPB1_DROME
Length = 1887
Score = 139 bits (351), Expect = 1e-31
Identities = 81/186 (43%), Positives = 116/186 (62%), Gaps = 4/186 (2%)
Frame = +3
Query: 6 RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
+I+ FG DL+ + ++DNA +LV+R+R+ M NE+ +F+DE +A +ME
Sbjct: 1226 KINVGFGEDLNCIFNDDNADKLVLRIRI-MNNEEN---------KFQDEDEA---VDKME 1272
Query: 186 DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMR----QDNKIVIDSVTGSFTKENEWL 353
D D+FLR +E+ +LS++TL GI I KV+M K ++ + TG F EWL
Sbjct: 1273 D-----DMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIVITETGEFKAIGEWL 1327
Query: 354 LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
LETDG + + V+ DVD RT SNDI E F+VLGIEAVR ++ E+ V+ F G YVNY
Sbjct: 1328 LETDGTSMMKVLSERDVDPIRTSSNDICEIFQVLGIEAVRKSVEKEMNAVLQFYGLYVNY 1387
Query: 534 RHLSVL 551
RHL++L
Sbjct: 1388 RHLALL 1393
[173][TOP]
>UniRef100_Q17085 DNA-directed RNA polymerase (Fragment) n=1 Tax=Artemia salina
RepID=Q17085_ARTSA
Length = 1341
Score = 139 bits (350), Expect = 1e-31
Identities = 81/186 (43%), Positives = 114/186 (61%), Gaps = 4/186 (2%)
Frame = +3
Query: 6 RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
+I A FG DL+ + ++DNA +LV+R+R+ +E K G E+++ D+ ME
Sbjct: 1146 KITAGFGEDLNCIFNDDNAEKLVLRIRIMNSDESKFG---------EEDEQIDK----ME 1192
Query: 186 DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMR----QDNKIVIDSVTGSFTKENEWL 353
D D+FLR +E+ +LS++TL GI I KV+M + K +I + TG F EWL
Sbjct: 1193 D-----DMFLRCIEANMLSDMTLQGIEAISKVYMHLPQTDNKKRIIITDTGEFRAIAEWL 1247
Query: 354 LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
LETDG + + V+ DVD RT SNDI E F VLGIEAVR ++ E+ V+ F G YVNY
Sbjct: 1248 LETDGTSLMKVLSERDVDPVRTYSNDICEIFTVLGIEAVRKSIEKEMNAVLQFYGLYVNY 1307
Query: 534 RHLSVL 551
RHL++L
Sbjct: 1308 RHLALL 1313
[174][TOP]
>UniRef100_O01370 DNA-directed RNA polymerase (Fragment) n=1 Tax=Mesorhabditis sp.
RepID=O01370_9BILA
Length = 633
Score = 139 bits (350), Expect = 1e-31
Identities = 83/186 (44%), Positives = 110/186 (59%), Gaps = 4/186 (2%)
Frame = +3
Query: 6 RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
RI FG L+V+ ++DNA LV R+R+ +++DK + E+ DR ME
Sbjct: 439 RIQQSFGETLNVIYTDDNADNLVFRIRIVADDQDKG----------DTEEQVDR----ME 484
Query: 186 DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQ----DNKIVIDSVTGSFTKENEWL 353
D D FLR +E +LS+LTL GI I KV+M + D K ++ + F EWL
Sbjct: 485 D-----DAFLRALEQNMLSDLTLQGIEQITKVYMHKPTTDDKKRIVITPEAGFKAIPEWL 539
Query: 354 LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
LETDG + V+ +VD RT SNDI E FEVLGIEAVR + E+ VISFDG+YVNY
Sbjct: 540 LETDGTALLQVLSQPNVDPIRTTSNDICEIFEVLGIEAVRKAIEREMHQVISFDGSYVNY 599
Query: 534 RHLSVL 551
RHL++L
Sbjct: 600 RHLALL 605
[175][TOP]
>UniRef100_UPI0000E48673 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
(RPB1) isoform 1 n=1 Tax=Strongylocentrotus purpuratus
RepID=UPI0000E48673
Length = 1880
Score = 139 bits (349), Expect = 2e-31
Identities = 82/186 (44%), Positives = 117/186 (62%), Gaps = 4/186 (2%)
Frame = +3
Query: 6 RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
+I+A FG DL+ + ++DNA +LV+R+R+ +E+K F+DEQ +ME
Sbjct: 1228 KINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENK----------FQDEQ-----VDKME 1272
Query: 186 DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMR----QDNKIVIDSVTGSFTKENEWL 353
D D+FLR +ES +L+++TL GI I KV+M + K +I + G F EW+
Sbjct: 1273 D-----DVFLRCIESNMLTDMTLQGIEQIAKVYMHLPQVANKKRIIITEEGEFKHIAEWI 1327
Query: 354 LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
LETDG + V+ +VD RT SNDI E F+VLGIEAVR ++ E+ VISFDG+YVNY
Sbjct: 1328 LETDGTAMMKVLSDPEVDPVRTFSNDICEIFQVLGIEAVRKSVETEMNHVISFDGSYVNY 1387
Query: 534 RHLSVL 551
RHL++L
Sbjct: 1388 RHLALL 1393
[176][TOP]
>UniRef100_UPI0000E48672 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
(RPB1) isoform 2 n=1 Tax=Strongylocentrotus purpuratus
RepID=UPI0000E48672
Length = 1913
Score = 139 bits (349), Expect = 2e-31
Identities = 81/186 (43%), Positives = 118/186 (63%), Gaps = 4/186 (2%)
Frame = +3
Query: 6 RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
+I+A FG DL+ + ++DNA +LV+R+R+ +E+K F+DE++ +ME
Sbjct: 1234 KINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENK----------FQDEEEQ---VDKME 1280
Query: 186 DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMR----QDNKIVIDSVTGSFTKENEWL 353
D D+FLR +ES +L+++TL GI I KV+M + K +I + G F EW+
Sbjct: 1281 D-----DVFLRCIESNMLTDMTLQGIEQIAKVYMHLPQVANKKRIIITEEGEFKHIAEWI 1335
Query: 354 LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
LETDG + V+ +VD RT SNDI E F+VLGIEAVR ++ E+ VISFDG+YVNY
Sbjct: 1336 LETDGTAMMKVLSDPEVDPVRTFSNDICEIFQVLGIEAVRKSVETEMNHVISFDGSYVNY 1395
Query: 534 RHLSVL 551
RHL++L
Sbjct: 1396 RHLALL 1401
[177][TOP]
>UniRef100_UPI0000E48671 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
(RPB1) isoform 3 n=1 Tax=Strongylocentrotus purpuratus
RepID=UPI0000E48671
Length = 1921
Score = 139 bits (349), Expect = 2e-31
Identities = 81/186 (43%), Positives = 118/186 (63%), Gaps = 4/186 (2%)
Frame = +3
Query: 6 RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
+I+A FG DL+ + ++DNA +LV+R+R+ +E+K F+DE++ +ME
Sbjct: 1234 KINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENK----------FQDEEEQ---VDKME 1280
Query: 186 DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMR----QDNKIVIDSVTGSFTKENEWL 353
D D+FLR +ES +L+++TL GI I KV+M + K +I + G F EW+
Sbjct: 1281 D-----DVFLRCIESNMLTDMTLQGIEQIAKVYMHLPQVANKKRIIITEEGEFKHIAEWI 1335
Query: 354 LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
LETDG + V+ +VD RT SNDI E F+VLGIEAVR ++ E+ VISFDG+YVNY
Sbjct: 1336 LETDGTAMMKVLSDPEVDPVRTFSNDICEIFQVLGIEAVRKSVETEMNHVISFDGSYVNY 1395
Query: 534 RHLSVL 551
RHL++L
Sbjct: 1396 RHLALL 1401
[178][TOP]
>UniRef100_B6JYP8 DNA-directed RNA polymerase n=1 Tax=Schizosaccharomyces japonicus
yFS275 RepID=B6JYP8_SCHJY
Length = 1748
Score = 139 bits (349), Expect = 2e-31
Identities = 77/185 (41%), Positives = 111/185 (60%), Gaps = 3/185 (1%)
Frame = +3
Query: 6 RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
+I F DL + SEDNA +L+IR R+ +++ KA
Sbjct: 1218 KIAESFERDLFTIWSEDNAEKLIIRCRIIRDDDKKA------------------------ 1253
Query: 186 DEEDA---EDLFLRKVESQLLSNLTLSGIPGIDKVFMRQDNKIVIDSVTGSFTKENEWLL 356
DE+D ED+FL+ +E +L +++L G+P I +V+M ++KIV + G F +++EW+L
Sbjct: 1254 DEDDGLIEEDIFLKTIEGHMLESISLRGVPNITRVYM-MEHKIVHQNDDGVFVRDDEWVL 1312
Query: 357 ETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNYR 536
ETDG+N M E VD +RT SN VE +VLGIEA R+ LL E+R VI FDG+YVNYR
Sbjct: 1313 ETDGINLAESMAVEGVDPSRTYSNSFVEVLQVLGIEATRSALLKELRNVIEFDGSYVNYR 1372
Query: 537 HLSVL 551
HL++L
Sbjct: 1373 HLALL 1377
[179][TOP]
>UniRef100_P36594 DNA-directed RNA polymerase II subunit rpb1 n=1
Tax=Schizosaccharomyces pombe RepID=RPB1_SCHPO
Length = 1752
Score = 139 bits (349), Expect = 2e-31
Identities = 76/182 (41%), Positives = 109/182 (59%)
Frame = +3
Query: 6 RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
+I F DL + SEDNA +L+IR R+ +++ KA E +
Sbjct: 1218 KIAESFERDLFTIWSEDNADKLIIRCRIIRDDDRKA---------------------EDD 1256
Query: 186 DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQDNKIVIDSVTGSFTKENEWLLETD 365
D ED+FL+ +E +L +++L G+P I +V+M ++KIV G+F + +EW+LETD
Sbjct: 1257 DNMIEEDVFLKTIEGHMLESISLRGVPNITRVYM-MEHKIVRQIEDGTFERADEWVLETD 1315
Query: 366 GVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNYRHLS 545
G+N M E VD TRT SN VE ++LGIEA R+ LL E+R VI FDG+YVNYRHL+
Sbjct: 1316 GINLTEAMTVEGVDATRTYSNSFVEILQILGIEATRSALLKELRNVIEFDGSYVNYRHLA 1375
Query: 546 VL 551
+L
Sbjct: 1376 LL 1377
[180][TOP]
>UniRef100_UPI0000F24379 DNA-directed RNA polymerase II largest subunit (RNA polymerase II
subunit 1) (B220) n=1 Tax=Pichia stipitis CBS 6054
RepID=UPI0000F24379
Length = 1739
Score = 138 bits (348), Expect = 2e-31
Identities = 78/183 (42%), Positives = 110/183 (60%)
Frame = +3
Query: 6 RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
+I +FG DL V+ S+D A +L+IR RV + + ++E DA+
Sbjct: 1216 KISQNFGEDLFVIWSDDTADKLIIRCRVVRDPKS-----------LDEEADAE------- 1257
Query: 186 DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQDNKIVIDSVTGSFTKENEWLLETD 365
ED L+++E+ +L +++L GIPGI +VFM Q +K+ TG F + EW+LETD
Sbjct: 1258 -----EDQILKRIEAHMLESISLRGIPGITRVFMMQ-HKVNTPDATGEFKQGKEWVLETD 1311
Query: 366 GVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNYRHLS 545
GVN VM VD +RT SN+ +E VLGIEA RA L EI V+SFDG+YVNYRH++
Sbjct: 1312 GVNLADVMAVPGVDSSRTYSNNFIEILSVLGIEATRAALFKEILNVLSFDGSYVNYRHMA 1371
Query: 546 VLV 554
+LV
Sbjct: 1372 LLV 1374
[181][TOP]
>UniRef100_O01375 DNA-directed RNA polymerase (Fragment) n=1 Tax=Teratorhabditis
palmarum RepID=O01375_9BILA
Length = 631
Score = 138 bits (348), Expect = 2e-31
Identities = 83/187 (44%), Positives = 106/187 (56%), Gaps = 4/187 (2%)
Frame = +3
Query: 3 NRIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEM 182
+RI FG DLH + ++DNA LV R+R+ EN+ D + +M
Sbjct: 438 SRITQGFGYDLHTIYTDDNADSLVFRIRIRSENKG----------------DTEETIEKM 481
Query: 183 EDEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQ----DNKIVIDSVTGSFTKENEW 350
ED D+FLR VE L LTL GI I KV+M + D K + + G F EW
Sbjct: 482 ED-----DMFLRAVEQICLLELTLQGIEQISKVYMHKPTTDDKKRTVITPEGDFRSIAEW 536
Query: 351 LLETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVN 530
LLETDG + + V+ +VD RT SNDI E FEVLGIEAVR + E+ VISFDG+YVN
Sbjct: 537 LLETDGTSLLDVLSQPNVDPVRTYSNDICEIFEVLGIEAVRKAIEREMHQVISFDGSYVN 596
Query: 531 YRHLSVL 551
YRHL++L
Sbjct: 597 YRHLALL 603
[182][TOP]
>UniRef100_A5E6J4 DNA-directed RNA polymerase n=1 Tax=Lodderomyces elongisporus
RepID=A5E6J4_LODEL
Length = 1745
Score = 138 bits (348), Expect = 2e-31
Identities = 79/183 (43%), Positives = 108/183 (59%)
Frame = +3
Query: 6 RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
+I +FG DL V+ S+D A +L+IR RV + P+ DE
Sbjct: 1210 KISQNFGDDLFVIWSDDTADKLIIRCRVVRD------------PKSLDE----------- 1246
Query: 186 DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQDNKIVIDSVTGSFTKENEWLLETD 365
D + ED L+++E+ +L +++L GIPGI +VFM Q +K+ TG F + EW+LETD
Sbjct: 1247 DADAEEDQILKRIEAHMLESISLRGIPGITRVFMMQ-HKVSKPDATGEFKQGKEWVLETD 1305
Query: 366 GVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNYRHLS 545
GVN VM VD RT SND +E VLGIEA R+ L EI VI+FDG+YVNYRH++
Sbjct: 1306 GVNLADVMAVPGVDSARTYSNDFIEILSVLGIEATRSALFKEILNVIAFDGSYVNYRHMA 1365
Query: 546 VLV 554
+LV
Sbjct: 1366 LLV 1368
[183][TOP]
>UniRef100_A3GID7 DNA-directed RNA polymerase n=1 Tax=Pichia stipitis
RepID=A3GID7_PICST
Length = 1739
Score = 138 bits (348), Expect = 2e-31
Identities = 78/183 (42%), Positives = 110/183 (60%)
Frame = +3
Query: 6 RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
+I +FG DL V+ S+D A +L+IR RV + + ++E DA+
Sbjct: 1216 KISQNFGEDLFVIWSDDTADKLIIRCRVVRDPKS-----------LDEEADAE------- 1257
Query: 186 DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQDNKIVIDSVTGSFTKENEWLLETD 365
ED L+++E+ +L +++L GIPGI +VFM Q +K+ TG F + EW+LETD
Sbjct: 1258 -----EDQILKRIEAHMLESISLRGIPGITRVFMMQ-HKVNTPDATGEFKQGKEWVLETD 1311
Query: 366 GVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNYRHLS 545
GVN VM VD +RT SN+ +E VLGIEA RA L EI V+SFDG+YVNYRH++
Sbjct: 1312 GVNLADVMAVPGVDSSRTYSNNFIEILSVLGIEATRAALFKEILNVLSFDGSYVNYRHMA 1371
Query: 546 VLV 554
+LV
Sbjct: 1372 LLV 1374
[184][TOP]
>UniRef100_B0XAQ9 DNA-directed RNA polymerase n=1 Tax=Culex quinquefasciatus
RepID=B0XAQ9_CULQU
Length = 1874
Score = 138 bits (347), Expect = 3e-31
Identities = 81/186 (43%), Positives = 116/186 (62%), Gaps = 4/186 (2%)
Frame = +3
Query: 6 RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
+I+A FG DL+ + ++DNA +LV+R+R+ M NED K + DE++ D+ ME
Sbjct: 1209 KINAGFGDDLNCIFNDDNADKLVLRIRI-MNNEDN-------KFQDNDEENMDK----ME 1256
Query: 186 DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMR----QDNKIVIDSVTGSFTKENEWL 353
D D+FLR +E+ +LS++TL GI I KV+M + ++ + G F EWL
Sbjct: 1257 D-----DMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDAKRRIVITPEGEFKAIGEWL 1311
Query: 354 LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
LETDG + + V+ DVD RT SNDI E F+VLGIEAVR ++ E+ V+ F G YVNY
Sbjct: 1312 LETDGTSMMKVLSERDVDPVRTASNDICEIFQVLGIEAVRKSVEKEMNNVLQFYGLYVNY 1371
Query: 534 RHLSVL 551
RHL++L
Sbjct: 1372 RHLALL 1377
[185][TOP]
>UniRef100_UPI000179338A PREDICTED: similar to DNA-directed RNA polymerase II subunit RPB1
(RNA polymerase II subunit B1) (DNA-directed RNA
polymerase III largest subunit) n=1 Tax=Acyrthosiphon
pisum RepID=UPI000179338A
Length = 1862
Score = 137 bits (346), Expect = 4e-31
Identities = 81/186 (43%), Positives = 114/186 (61%), Gaps = 4/186 (2%)
Frame = +3
Query: 6 RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
+I+A FG DL+ + ++DNA +L++R+R+ + K D DE AD+ ME
Sbjct: 1227 KINAGFGDDLNCIFNDDNADKLILRIRIMNGEDGKMNGGD-------DEDTADK----ME 1275
Query: 186 DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMR----QDNKIVIDSVTGSFTKENEWL 353
D D+FLR +E+ +LS++TL GI I KV+M K +I + TG F +WL
Sbjct: 1276 D-----DMFLRCIEANMLSDMTLQGIEAIAKVYMHLPQTDAKKRIIITDTGEFKAIADWL 1330
Query: 354 LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
LETDG + + V+ DVD RT SNDI E F VLGIEAVR ++ E+ TV++F G YVNY
Sbjct: 1331 LETDGTSLMKVLSERDVDPVRTFSNDICEIFSVLGIEAVRKSVEKEMNTVLNFYGLYVNY 1390
Query: 534 RHLSVL 551
RHL++L
Sbjct: 1391 RHLALL 1396
[186][TOP]
>UniRef100_UPI000051A77E PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
isoform 2 n=1 Tax=Apis mellifera RepID=UPI000051A77E
Length = 1422
Score = 137 bits (346), Expect = 4e-31
Identities = 78/186 (41%), Positives = 115/186 (61%), Gaps = 4/186 (2%)
Frame = +3
Query: 6 RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
+I+A FG DL+ + ++DNA +LV+R+R+ +++K F+D ++ +ME
Sbjct: 1226 KINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDNK----------FQDSEE--ETVDKME 1273
Query: 186 DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMR----QDNKIVIDSVTGSFTKENEWL 353
D D+FLR +E+ +LS++TL GI I KV+M K ++ + TG F EWL
Sbjct: 1274 D-----DMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDAKKRIVITETGEFKAIAEWL 1328
Query: 354 LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
LETDG + + V+ DVD RT SNDI E F+VLGIEAVR ++ E+ V+ F G YVNY
Sbjct: 1329 LETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNAVLQFYGLYVNY 1388
Query: 534 RHLSVL 551
RHL++L
Sbjct: 1389 RHLALL 1394
[187][TOP]
>UniRef100_C6F1F7 DNA-directed RNA polymerase n=1 Tax=Plasmodium gallinaceum
RepID=C6F1F7_PLAGA
Length = 2200
Score = 137 bits (346), Expect = 4e-31
Identities = 75/160 (46%), Positives = 101/160 (63%), Gaps = 8/160 (5%)
Frame = +3
Query: 96 ENEDKAGISD-----STKPRFEDE---QDADRVAAEMEDEEDAEDLFLRKVESQLLSNLT 251
EN + G D ST +D+ ++ + + +ED ED FL+K+ Q LS L
Sbjct: 1619 ENMKELGSQDDMYNKSTSKNMDDDATLKNRSKTNNPLLSKEDTEDTFLKKLMEQCLSTLK 1678
Query: 252 LSGIPGIDKVFMRQDNKIVIDSVTGSFTKENEWLLETDGVNFIAVMGHEDVDFTRTVSND 431
L GI I KV+MR++ KI D+ +G F + + W+L+TDG N + VD+ +T+SND
Sbjct: 1679 LRGIENITKVYMREEAKINYDTESGKFIRSSHWVLDTDGCNLENIFCAPLVDYKKTISND 1738
Query: 432 IVETFEVLGIEAVRATLLNEIRTVISFDGAYVNYRHLSVL 551
IVE FEVLGIEAVR LL E+RTVISFD +YVNYRHLS+L
Sbjct: 1739 IVEIFEVLGIEAVRRALLKELRTVISFDSSYVNYRHLSIL 1778
[188][TOP]
>UniRef100_B4IK28 DNA-directed RNA polymerase n=1 Tax=Drosophila sechellia
RepID=B4IK28_DROSE
Length = 1887
Score = 137 bits (346), Expect = 4e-31
Identities = 80/186 (43%), Positives = 115/186 (61%), Gaps = 4/186 (2%)
Frame = +3
Query: 6 RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
+I+ FG DL+ + ++DNA +LV+R+R+ M NE+ +F+DE +A +ME
Sbjct: 1226 KINVGFGEDLNCIFNDDNADKLVLRIRI-MNNEEN---------KFQDEDEA---VDKME 1272
Query: 186 DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMR----QDNKIVIDSVTGSFTKENEWL 353
D D+FLR +E+ +LS++TL GI I KV+M K ++ + G F EWL
Sbjct: 1273 D-----DMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIVITENGEFKAIGEWL 1327
Query: 354 LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
LETDG + + V+ DVD RT SNDI E F+VLGIEAVR ++ E+ V+ F G YVNY
Sbjct: 1328 LETDGTSMMKVLSERDVDPIRTSSNDICEIFQVLGIEAVRKSVEKEMNAVLQFYGLYVNY 1387
Query: 534 RHLSVL 551
RHL++L
Sbjct: 1388 RHLALL 1393
[189][TOP]
>UniRef100_A9QMH2 RNA polymerase 2 (Fragment) n=1 Tax=Brevibucca saprophaga
RepID=A9QMH2_9BILA
Length = 386
Score = 137 bits (346), Expect = 4e-31
Identities = 81/187 (43%), Positives = 113/187 (60%), Gaps = 4/187 (2%)
Frame = +3
Query: 3 NRIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEM 182
++I+ FG DL+V+ ++DNA LV R+R+ + DK +E+ D+ M
Sbjct: 192 DKINKGFGDDLNVIYTDDNADTLVFRIRINASDGDKG-----------EEEQVDK----M 236
Query: 183 EDEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQ----DNKIVIDSVTGSFTKENEW 350
ED D+FLR +E+ +LS+LTL GI I KV+M + D K + G+F EW
Sbjct: 237 ED-----DVFLRCIEANMLSDLTLQGIETIAKVYMHKPNTDDKKRTFITTEGAFKSVAEW 291
Query: 351 LLETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVN 530
+LETDG + V+ VD RT SNDI E F+VLGIEAVR ++ E+ VISFDG+YVN
Sbjct: 292 ILETDGTALLKVLSERHVDPVRTTSNDICEIFDVLGIEAVRKSIEREMDNVISFDGSYVN 351
Query: 531 YRHLSVL 551
YRHL++L
Sbjct: 352 YRHLALL 358
[190][TOP]
>UniRef100_Q9C428 DNA-directed RNA polymerase (Fragment) n=1 Tax=Monoblepharis
macrandra RepID=Q9C428_9FUNG
Length = 1603
Score = 137 bits (346), Expect = 4e-31
Identities = 78/183 (42%), Positives = 111/183 (60%)
Frame = +3
Query: 6 RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
+I + + LHVM S+DNA L + +R+ N+D+A + ++
Sbjct: 1162 KISSQYQDVLHVMHSDDNAPSLALVIRI---NQDEA------------------MQESLK 1200
Query: 186 DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQDNKIVIDSVTGSFTKENEWLLETD 365
+ ED+ LR VESQL+++L L GI I +V++ + V ++ TG+ + E +LETD
Sbjct: 1201 ESAQTEDVILRDVESQLMASLALGGITNIRRVYISEQKVAVQNTATGAIEQAQEHILETD 1260
Query: 366 GVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNYRHLS 545
G+N VM E+VDFTRT SN +E + VLGIEA RA LL EIR VI FDG+YVNYRHL+
Sbjct: 1261 GINLREVMAVEEVDFTRTYSNAPLEIYAVLGIEAGRAALLKEIRKVIEFDGSYVNYRHLA 1320
Query: 546 VLV 554
+LV
Sbjct: 1321 LLV 1323
[191][TOP]
>UniRef100_B9WN64 DNA-directed RNA polymerase n=1 Tax=Candida dubliniensis CD36
RepID=B9WN64_CANDC
Length = 1735
Score = 137 bits (346), Expect = 4e-31
Identities = 79/183 (43%), Positives = 109/183 (59%)
Frame = +3
Query: 6 RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
+I +FG DL V+ S+D A +L+IR RV + P+ DE
Sbjct: 1216 KISQNFGEDLFVIWSDDTADKLIIRCRVVRD------------PKSLDE----------- 1252
Query: 186 DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQDNKIVIDSVTGSFTKENEWLLETD 365
D + ED L+++E+ +L +++L GIPGI +VFM Q +K+ TG F + EW+LETD
Sbjct: 1253 DADAEEDQILKRIEAHMLESISLRGIPGITRVFMMQ-HKVSHPDETGEFKQGKEWVLETD 1311
Query: 366 GVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNYRHLS 545
GVN VM VD RT SND +E VLGIEA R++L EI VI+FDG+YVNYRH++
Sbjct: 1312 GVNLADVMAVPGVDSARTYSNDFIEVLSVLGIEATRSSLYKEILNVIAFDGSYVNYRHMA 1371
Query: 546 VLV 554
+LV
Sbjct: 1372 LLV 1374
[192][TOP]
>UniRef100_UPI000186D846 predicted protein n=1 Tax=Pediculus humanus corporis
RepID=UPI000186D846
Length = 1885
Score = 137 bits (345), Expect = 5e-31
Identities = 82/186 (44%), Positives = 117/186 (62%), Gaps = 4/186 (2%)
Frame = +3
Query: 6 RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
+I+A FG DL+ + ++DNA +LV+R+R+ M N++K ++D E+ QD +ME
Sbjct: 1219 KINAGFGDDLNCIFNDDNAEKLVLRLRI-MNNDEK--VTDE-----EENQD------KME 1264
Query: 186 DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMR----QDNKIVIDSVTGSFTKENEWL 353
D D+FLR +E+ +LS++TL GI I KV+M K ++ + TG F EWL
Sbjct: 1265 D-----DMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQNDSKKRIVITETGEFKAIAEWL 1319
Query: 354 LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
LETDG + + V+ DVD RT SNDI E F VLGIEAVR ++ E+ V+ F G YVNY
Sbjct: 1320 LETDGTSLMKVLSERDVDPVRTYSNDICEIFSVLGIEAVRKSVEKEMNQVLQFYGLYVNY 1379
Query: 534 RHLSVL 551
RHL++L
Sbjct: 1380 RHLALL 1385
[193][TOP]
>UniRef100_UPI0000D5670C PREDICTED: similar to GA13798-PA n=1 Tax=Tribolium castaneum
RepID=UPI0000D5670C
Length = 2007
Score = 137 bits (345), Expect = 5e-31
Identities = 78/186 (41%), Positives = 111/186 (59%), Gaps = 4/186 (2%)
Frame = +3
Query: 6 RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
+I+A FG DL+ + ++DNA +LV+R+R+ ++ K G AD +M+
Sbjct: 1230 KINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDGKFG------------DGADEDVDKMD 1277
Query: 186 DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMR----QDNKIVIDSVTGSFTKENEWL 353
D D+FLR +E+ +LS++TL GI I KV+M K ++ + TG F EWL
Sbjct: 1278 D-----DMFLRCIEANMLSDMTLQGIEAISKVYMHLPQNDSKKRIVITETGEFKAIAEWL 1332
Query: 354 LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
LETDG + + V+ DVD RT SNDI E F VLGIEAVR ++ E+ V+ F G YVNY
Sbjct: 1333 LETDGTSMMKVLSERDVDPVRTFSNDICEIFSVLGIEAVRKSVEKEMNAVLQFYGLYVNY 1392
Query: 534 RHLSVL 551
RHL++L
Sbjct: 1393 RHLALL 1398
[194][TOP]
>UniRef100_A9QMH0 DNA-directed RNA polymerase (Fragment) n=1 Tax=Panagrellus
redivivus RepID=A9QMH0_PANRE
Length = 636
Score = 137 bits (345), Expect = 5e-31
Identities = 84/187 (44%), Positives = 108/187 (57%), Gaps = 4/187 (2%)
Frame = +3
Query: 3 NRIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEM 182
++I FG DLHV+ ++DNA +LV +R+ DK D++ +M
Sbjct: 443 DKITKGFGDDLHVIYTDDNAEKLVFHLRLQNSPGDK---------------DSEEQIDKM 487
Query: 183 EDEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQ----DNKIVIDSVTGSFTKENEW 350
ED D FLR VE LLS+LTL GI I KV+M + D K V+ + G F EW
Sbjct: 488 ED-----DAFLRCVEQNLLSDLTLQGIESISKVYMHKPSTDDKKRVVMTPEGDFQMIAEW 542
Query: 351 LLETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVN 530
+LETDG + V+ VD RT SNDI E FEVLGIEAVR + E+ VISFDG+YVN
Sbjct: 543 ILETDGTALLKVLSEPMVDGIRTYSNDICEVFEVLGIEAVRKAIEREMNHVISFDGSYVN 602
Query: 531 YRHLSVL 551
YRHL++L
Sbjct: 603 YRHLALL 609
[195][TOP]
>UniRef100_UPI000179348F PREDICTED: similar to DNA-directed RNA polymerase II subunit RPB1
(RNA polymerase II subunit B1) (DNA-directed RNA
polymerase III largest subunit) n=1 Tax=Acyrthosiphon
pisum RepID=UPI000179348F
Length = 1862
Score = 137 bits (344), Expect = 7e-31
Identities = 80/186 (43%), Positives = 112/186 (60%), Gaps = 4/186 (2%)
Frame = +3
Query: 6 RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
+I+A FG DL+ + ++DNA +L++R+R+ + K D DE D+ ME
Sbjct: 1227 KINAGFGDDLNCIFNDDNADKLILRIRIMNGEDGKMNGGD-------DEDTVDK----ME 1275
Query: 186 DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMR----QDNKIVIDSVTGSFTKENEWL 353
D D+FLR +E+ +LS++TL GI I KV+M K +I + TG F +WL
Sbjct: 1276 D-----DMFLRCIEANMLSDMTLQGIDSIGKVYMHLPQTDSKKRIIITDTGEFKAIADWL 1330
Query: 354 LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
LETDG + + V+ DVD RT SNDI E F VLGIEAVR ++ E+ TV+ F G YVNY
Sbjct: 1331 LETDGTSLMKVLSERDVDPVRTFSNDICEIFSVLGIEAVRKSVEKEMNTVLQFYGLYVNY 1390
Query: 534 RHLSVL 551
RHL++L
Sbjct: 1391 RHLALL 1396
[196][TOP]
>UniRef100_B9PMD7 DNA-directed RNA polymerase n=2 Tax=Toxoplasma gondii
RepID=B9PMD7_TOXGO
Length = 1892
Score = 136 bits (343), Expect = 9e-31
Identities = 76/183 (41%), Positives = 113/183 (61%), Gaps = 1/183 (0%)
Frame = +3
Query: 6 RIHAHFGGD-LHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEM 182
+I+A F + L + ++DN+ +LV+R+R+ + P +++D D
Sbjct: 1243 KIYAEFPNEELDCIWTDDNSDDLVLRIRLKQQ------------PGEGEDEDKDE----- 1285
Query: 183 EDEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQDNKIVIDSVTGSFTKENEWLLET 362
+D +A D FL+K+ Q L+ +TL GI I KV+MR++ + + ++ G F + N W+L+T
Sbjct: 1286 DDVAEAGDRFLQKLMVQCLAGITLRGITNISKVYMREEARTIYNNQLGKFERTNNWVLDT 1345
Query: 363 DGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNYRHL 542
DG N V+ VD TRT SND+ E F VLGIEAVR LL E+R VISFDG+YVNYRHL
Sbjct: 1346 DGCNLEDVLPIPMVDDTRTTSNDMTEIFHVLGIEAVRRALLRELRAVISFDGSYVNYRHL 1405
Query: 543 SVL 551
++L
Sbjct: 1406 AIL 1408
[197][TOP]
>UniRef100_B6KEC6 DNA-directed RNA polymerase n=1 Tax=Toxoplasma gondii ME49
RepID=B6KEC6_TOXGO
Length = 1892
Score = 136 bits (343), Expect = 9e-31
Identities = 76/183 (41%), Positives = 113/183 (61%), Gaps = 1/183 (0%)
Frame = +3
Query: 6 RIHAHFGGD-LHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEM 182
+I+A F + L + ++DN+ +LV+R+R+ + P +++D D
Sbjct: 1243 KIYAEFPNEELDCIWTDDNSDDLVLRIRLKQQ------------PGEGEDEDKDE----- 1285
Query: 183 EDEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQDNKIVIDSVTGSFTKENEWLLET 362
+D +A D FL+K+ Q L+ +TL GI I KV+MR++ + + ++ G F + N W+L+T
Sbjct: 1286 DDVAEAGDRFLQKLMVQCLAGITLRGITNISKVYMREEARTIYNNQLGKFERTNNWVLDT 1345
Query: 363 DGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNYRHL 542
DG N V+ VD TRT SND+ E F VLGIEAVR LL E+R VISFDG+YVNYRHL
Sbjct: 1346 DGCNLEDVLPIPMVDDTRTTSNDMTEIFHVLGIEAVRRALLRELRAVISFDGSYVNYRHL 1405
Query: 543 SVL 551
++L
Sbjct: 1406 AIL 1408
[198][TOP]
>UniRef100_C4Y5N4 DNA-directed RNA polymerase n=1 Tax=Clavispora lusitaniae ATCC 42720
RepID=C4Y5N4_CLAL4
Length = 1402
Score = 136 bits (343), Expect = 9e-31
Identities = 77/183 (42%), Positives = 112/183 (61%)
Frame = +3
Query: 6 RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
+I +FG DL V+ S+D A +L+IR RV + P+ E+E D +
Sbjct: 1175 KISQNFGEDLFVIWSDDTADKLIIRCRVIRD------------PKLEEEGDHE------- 1215
Query: 186 DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQDNKIVIDSVTGSFTKENEWLLETD 365
ED L++VE+ +L +++L GIPGI +VFM Q +K+ +G F+++ EW+LETD
Sbjct: 1216 -----EDQILKRVEAHMLESISLRGIPGITRVFMMQ-HKMSTPDESGEFSQKQEWVLETD 1269
Query: 366 GVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNYRHLS 545
GVN V+ VD +RT SN+ +E VLGIEA R+ L EI VI+FDG+YVNYRH++
Sbjct: 1270 GVNLAEVIAVPGVDSSRTYSNNFIEILSVLGIEATRSALYKEILNVIAFDGSYVNYRHMA 1329
Query: 546 VLV 554
+LV
Sbjct: 1330 LLV 1332
[199][TOP]
>UniRef100_Q4P7Q0 DNA-directed RNA polymerase n=1 Tax=Ustilago maydis
RepID=Q4P7Q0_USTMA
Length = 1774
Score = 135 bits (341), Expect = 2e-30
Identities = 78/185 (42%), Positives = 109/185 (58%), Gaps = 2/185 (1%)
Frame = +3
Query: 3 NRIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEM 182
++I A FG D+ VM SEDNA L++R+RV + +K
Sbjct: 1226 SKISAMFGQDIFVMHSEDNAENLILRIRVVDNDPEK------------------------ 1261
Query: 183 EDEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFM-RQDNKIV-IDSVTGSFTKENEWLL 356
+ + E++FL+ + SQ+L+ + L GI GI KV++ +QDNK +D +TG + +EW+L
Sbjct: 1262 -EAQGEEEIFLKNLASQMLAEIDLKGIKGIRKVYIVQQDNKTRRVDPITGDWRTVSEWVL 1320
Query: 357 ETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNYR 536
ETDG N V+ E VD RT N+ VE F V GIEA R +LL E R VI FDG+YVNYR
Sbjct: 1321 ETDGSNLAEVLAVEGVDAIRTSCNNPVEVFRVFGIEAARNSLLRETRAVIEFDGSYVNYR 1380
Query: 537 HLSVL 551
HL++L
Sbjct: 1381 HLALL 1385
[200][TOP]
>UniRef100_B0DB45 DNA-directed RNA polymerase n=1 Tax=Laccaria bicolor S238N-H82
RepID=B0DB45_LACBS
Length = 1742
Score = 135 bits (340), Expect = 2e-30
Identities = 82/185 (44%), Positives = 115/185 (62%), Gaps = 2/185 (1%)
Frame = +3
Query: 3 NRIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEM 182
+RI F DL V+ SEDN+ +LVIR RV + + DK + T
Sbjct: 1221 SRIAESFKTDLFVIWSEDNSEKLVIRCRV-LGSADKEDDGNGT----------------- 1262
Query: 183 EDEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQDNKIVIDSVTGSFT--KENEWLL 356
ED+FLR++E+ +L++++L G+ GI++VF+ +++KI I + GS +E EW+L
Sbjct: 1263 ----IEEDIFLRQLENTMLNSVSLRGVKGINRVFLMENDKITI-AKDGSIKNGQEKEWVL 1317
Query: 357 ETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNYR 536
ETDGVN VM + VDF RT SN VE F VLGIEA RA ++ E+R VI FDG+YVNYR
Sbjct: 1318 ETDGVNLKTVMCIDGVDFKRTYSNSCVEIFNVLGIEAARAAIMKELRGVIEFDGSYVNYR 1377
Query: 537 HLSVL 551
HL++L
Sbjct: 1378 HLALL 1382
[201][TOP]
>UniRef100_A8N128 DNA-directed RNA polymerase n=1 Tax=Coprinopsis cinerea okayama7#130
RepID=A8N128_COPC7
Length = 1642
Score = 135 bits (340), Expect = 2e-30
Identities = 81/185 (43%), Positives = 110/185 (59%), Gaps = 2/185 (1%)
Frame = +3
Query: 3 NRIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEM 182
+RI F DL V+ SEDN+ LVIR RV D+ D + V E
Sbjct: 1168 SRIAECFKSDLFVIWSEDNSETLVIRCRVLSSG---------------DKDDPEEVGLE- 1211
Query: 183 EDEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQDNKIVIDSVTGSFTKEN--EWLL 356
ED+FLR++E+ +L+++TL G+ GI++VF+ +++ + + GS E EW+L
Sbjct: 1212 ------EDIFLRQLENTMLNSVTLRGVRGINRVFLTASDRVTL-APDGSIKTEKGAEWIL 1264
Query: 357 ETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNYR 536
ETDG N VM + VD TRT SN+ VE F VLG+EA RA L+ EIR VI FDG+YVNYR
Sbjct: 1265 ETDGTNLKGVMCLDGVDSTRTYSNNCVEIFTVLGVEAARAALMKEIRNVIEFDGSYVNYR 1324
Query: 537 HLSVL 551
HL +L
Sbjct: 1325 HLGLL 1329
[202][TOP]
>UniRef100_Q7Q3C6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Anopheles gambiae
RepID=Q7Q3C6_ANOGA
Length = 1878
Score = 134 bits (336), Expect = 6e-30
Identities = 80/186 (43%), Positives = 114/186 (61%), Gaps = 4/186 (2%)
Frame = +3
Query: 6 RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
+I+A FG DL+ + ++DNA +LV+R+R+ NED K + +E++ D+ ME
Sbjct: 1224 KINAGFGDDLNCIFNDDNADKLVLRIRIM--NEDN-------KFQENEEENMDK----ME 1270
Query: 186 DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMR----QDNKIVIDSVTGSFTKENEWL 353
D D+FLR +E+ +LS++TL GI I KV+M K ++ + G F EWL
Sbjct: 1271 D-----DMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDAKKRIVITPEGEFKPIGEWL 1325
Query: 354 LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
LETDG + + V+ DVD RT SNDI E F VLGIEAVR ++ E+ V+ F G YVNY
Sbjct: 1326 LETDGTSMMKVLSERDVDPVRTYSNDICEIFSVLGIEAVRKSVEKEMNNVLQFYGLYVNY 1385
Query: 534 RHLSVL 551
RHL++L
Sbjct: 1386 RHLALL 1391
[203][TOP]
>UniRef100_Q8MX30 DNA-directed RNA polymerase (Fragment) n=1 Tax=Naegleria gruberi
RepID=Q8MX30_NAEGR
Length = 1590
Score = 133 bits (335), Expect = 8e-30
Identities = 74/182 (40%), Positives = 112/182 (61%)
Frame = +3
Query: 6 RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
+I F D+ S+DNA +L++ VR+ ++++K + K D D E E
Sbjct: 1180 KIQEEFQNDITCFYSDDNADKLILVVRIHKDDKEKEKDAQVAK----DPSDEVLRKLEEE 1235
Query: 186 DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQDNKIVIDSVTGSFTKENEWLLETD 365
D E++ FLR++ES +L+ L L G + KVF+R++N + S +G T + +W+L+T+
Sbjct: 1236 DIENSTVEFLRRLESNMLNELALKGYKDLKKVFLREENDKKVFSSSGVATVK-QWVLDTE 1294
Query: 366 GVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNYRHLS 545
G N +AV+ H VD T T SND+ E +VLGIEA R L+ E+R VI FDG+YVNYRHL+
Sbjct: 1295 GCNLLAVLSHPYVDHTITTSNDVNEILDVLGIEACRNALMREMRKVIEFDGSYVNYRHLA 1354
Query: 546 VL 551
+L
Sbjct: 1355 IL 1356
[204][TOP]
>UniRef100_UPI000151A8B3 hypothetical protein PGUG_01105 n=1 Tax=Pichia guilliermondii ATCC
6260 RepID=UPI000151A8B3
Length = 1018
Score = 133 bits (334), Expect = 1e-29
Identities = 77/183 (42%), Positives = 108/183 (59%)
Frame = +3
Query: 6 RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
+I +FG DL V+ S+D A +L+IR RV + P+ DE
Sbjct: 482 KISQNFGEDLFVIWSDDTADKLIIRCRVVRD------------PKSLDE----------- 518
Query: 186 DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQDNKIVIDSVTGSFTKENEWLLETD 365
D + ED L+++E+ +L +++L GI GI +VFM Q +K+ + TG F + EW+LETD
Sbjct: 519 DVDAEEDQILKRIEAHMLESISLRGIQGITRVFMMQ-HKLSLPDETGEFKQGQEWVLETD 577
Query: 366 GVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNYRHLS 545
GVN VM VD RT SN+ +E VLGIEA R+ L EI VI+FDG+YVNYRH++
Sbjct: 578 GVNLADVMAVPGVDAKRTYSNNFIEILSVLGIEATRSALFKEILNVIAFDGSYVNYRHMA 637
Query: 546 VLV 554
+LV
Sbjct: 638 LLV 640
[205][TOP]
>UniRef100_A5DCV3 DNA-directed RNA polymerase II subunit RPB1 (Fragments) n=1
Tax=Pichia guilliermondii RepID=RPB1_PICGU
Length = 1579
Score = 133 bits (334), Expect = 1e-29
Identities = 77/183 (42%), Positives = 108/183 (59%)
Frame = +3
Query: 6 RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
+I +FG DL V+ S+D A +L+IR RV + P+ DE
Sbjct: 1048 KISQNFGEDLFVIWSDDTADKLIIRCRVVRD------------PKSLDE----------- 1084
Query: 186 DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQDNKIVIDSVTGSFTKENEWLLETD 365
D + ED L+++E+ +L +++L GI GI +VFM Q +K+ + TG F + EW+LETD
Sbjct: 1085 DVDAEEDQILKRIEAHMLESISLRGIQGITRVFMMQ-HKLSLPDETGEFKQGQEWVLETD 1143
Query: 366 GVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNYRHLS 545
GVN VM VD RT SN+ +E VLGIEA R+ L EI VI+FDG+YVNYRH++
Sbjct: 1144 GVNLADVMAVPGVDAKRTYSNNFIEILSVLGIEATRSALFKEILNVIAFDGSYVNYRHMA 1203
Query: 546 VLV 554
+LV
Sbjct: 1204 LLV 1206
[206][TOP]
>UniRef100_C4R4Y0 DNA-directed RNA polymerase n=1 Tax=Pichia pastoris GS115
RepID=C4R4Y0_PICPG
Length = 1743
Score = 132 bits (332), Expect = 2e-29
Identities = 79/184 (42%), Positives = 108/184 (58%)
Frame = +3
Query: 3 NRIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEM 182
++I F DL VM SEDNA +L+IR RV + P+ DE E+
Sbjct: 1216 DKISEVFSDDLFVMWSEDNADKLIIRCRVIRD------------PKAMDE--------EL 1255
Query: 183 EDEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQDNKIVIDSVTGSFTKENEWLLET 362
E EED L+++E+ +L + L GIPGI KV+M + +K+ + +G + E W LET
Sbjct: 1256 EAEEDQ---MLKRIEAHMLDLIALRGIPGISKVYMVK-HKVSVPDESGEYKNEELWALET 1311
Query: 363 DGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNYRHL 542
DG+N VM VD +RT SN VE VLGIEA R++L EI VI+FDG+YVNYRH+
Sbjct: 1312 DGINLAEVMAVPGVDSSRTYSNSFVEILSVLGIEATRSSLYKEILNVIAFDGSYVNYRHM 1371
Query: 543 SVLV 554
++LV
Sbjct: 1372 ALLV 1375
[207][TOP]
>UniRef100_Q4N0F9 DNA-directed RNA polymerase n=1 Tax=Theileria parva
RepID=Q4N0F9_THEPA
Length = 1681
Score = 132 bits (331), Expect = 2e-29
Identities = 77/183 (42%), Positives = 110/183 (60%), Gaps = 2/183 (1%)
Frame = +3
Query: 9 IHAHFG-GDLHVMASEDNAAELVIRVRVAMENE-DKAGISDSTKPRFEDEQDADRVAAEM 182
I++ F G++ + ++DN+ LV+R+RV E D +G SD+ +AD
Sbjct: 1227 IYSEFSNGEIDAIYTDDNSELLVMRIRVKYGGEGDNSGPSDT---------EAD------ 1271
Query: 183 EDEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQDNKIVIDSVTGSFTKENEWLLET 362
FL K + +L + L G+ GI KV+MR++N + +S GSF + ++W+L+T
Sbjct: 1272 ---------FLNKFMTDVLCGIKLRGVKGITKVYMREENCVRYNSAVGSFDRVSQWVLDT 1322
Query: 363 DGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNYRHL 542
DG N +V+ VD+T+T SND+ E F V GIEA R LL EIR VISFDGAYVNYRHL
Sbjct: 1323 DGCNLESVLPITCVDYTKTFSNDVSEIFHVFGIEAARRALLREIRAVISFDGAYVNYRHL 1382
Query: 543 SVL 551
S+L
Sbjct: 1383 SLL 1385
[208][TOP]
>UniRef100_A8IRZ2 DNA-directed RNA polymerase n=1 Tax=Chlamydomonas reinhardtii
RepID=A8IRZ2_CHLRE
Length = 1789
Score = 130 bits (328), Expect = 5e-29
Identities = 71/174 (40%), Positives = 102/174 (58%)
Frame = +3
Query: 33 LHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEMEDEEDAEDLF 212
++V+ ++DNA +L++R+RV E A++ E + ED
Sbjct: 1244 INVLVNDDNAEKLIMRIRVVKTEE----------------------ASKDESADPTEDTM 1281
Query: 213 LRKVESQLLSNLTLSGIPGIDKVFMRQDNKIVIDSVTGSFTKENEWLLETDGVNFIAVMG 392
L+ S + ++ L G+P I KVF+R +N+ V D G+F K EW+L+T+G+N V+
Sbjct: 1282 LKL--SGAIMDVRLHGVPNIRKVFIRAENQHVYDKEKGAFRKYEEWILDTEGINLEQVLA 1339
Query: 393 HEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNYRHLSVLV 554
E VD RT+SN I+E EVLGIEA RA L E+R VI FDG+YVNYRHL+ LV
Sbjct: 1340 FEGVDSRRTMSNSIIEVLEVLGIEAARAALFKEVRNVIQFDGSYVNYRHLACLV 1393
[209][TOP]
>UniRef100_Q4UCP5 DNA-directed RNA polymerase n=1 Tax=Theileria annulata
RepID=Q4UCP5_THEAN
Length = 1678
Score = 130 bits (328), Expect = 5e-29
Identities = 74/182 (40%), Positives = 104/182 (57%), Gaps = 1/182 (0%)
Frame = +3
Query: 9 IHAHFG-GDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
I++ F G++ + ++DN+ LV+R+RV E E
Sbjct: 1227 IYSEFSNGEIDAIYTDDNSELLVMRIRVKYGGE-----------------------GENS 1263
Query: 186 DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQDNKIVIDSVTGSFTKENEWLLETD 365
D E FL K + +L + L G+ GI KV+MR++N + +S GSF + ++W+L+TD
Sbjct: 1264 GPSDTEADFLNKFMTDVLCGIKLRGVKGITKVYMREENCVRYNSTVGSFDRVSQWVLDTD 1323
Query: 366 GVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNYRHLS 545
G N +V+ VD+T+T SND+ E F V GIEA R LL EIR VISFDGAYVNYRHLS
Sbjct: 1324 GCNLESVLPITCVDYTKTFSNDVSEIFHVFGIEAARRALLREIRAVISFDGAYVNYRHLS 1383
Query: 546 VL 551
+L
Sbjct: 1384 LL 1385
[210][TOP]
>UniRef100_Q2N161 DNA-directed RNA polymerase II largest subunit (Fragment) n=1
Tax=Suberites fuscus RepID=Q2N161_9METZ
Length = 292
Score = 129 bits (325), Expect = 1e-28
Identities = 81/180 (45%), Positives = 113/180 (62%), Gaps = 4/180 (2%)
Frame = +3
Query: 6 RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
+I +HFG DL+ + ++DNA +LV+R+R+ M NEDK +++DE++ +++
Sbjct: 131 KISSHFGEDLNCIFNDDNAEKLVLRIRL-MSNEDK---------KYDDEEE------QLD 174
Query: 186 DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMR---QDNKIVID-SVTGSFTKENEWL 353
ED D FLR +E+ LLS++ L GI I KV+M QD+K I + G + EW+
Sbjct: 175 KMED--DNFLRCLEANLLSDMALQGIEQIAKVYMHYPTQDSKKRISINEDGEYKAYQEWI 232
Query: 354 LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
LETDGVN + V+ VD RT SN IVE F VLGIEAVR + E+ VISFDG+YVNY
Sbjct: 233 LETDGVNLMRVLSEPLVDPVRTSSNHIVEIFSVLGIEAVRKAVEKELHHVISFDGSYVNY 292
[211][TOP]
>UniRef100_Q5KGG3 DNA-directed RNA polymerase n=1 Tax=Filobasidiella neoformans
RepID=Q5KGG3_CRYNE
Length = 1786
Score = 129 bits (323), Expect = 2e-28
Identities = 72/176 (40%), Positives = 100/176 (56%)
Frame = +3
Query: 24 GGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEMEDEEDAE 203
G D+ V+ SEDNA +LVIR+RV E ED+ + D E
Sbjct: 1235 GKDVFVIHSEDNAPKLVIRIRVVAEKEDEELLGD-------------------------E 1269
Query: 204 DLFLRKVESQLLSNLTLSGIPGIDKVFMRQDNKIVIDSVTGSFTKENEWLLETDGVNFIA 383
D+FL+++E LL + L GI GI +VF+ + ++V+ S G + +E EW LETDG+N
Sbjct: 1270 DMFLKRIEGTLLDQVELGGITGITRVFISEGKQVVV-SQNGEYDQEKEWFLETDGINLKE 1328
Query: 384 VMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNYRHLSVL 551
VM + V+ RT SN+ E +E LGIEA R L E+ VI G+YVNYRHL++L
Sbjct: 1329 VMAVDGVNAFRTYSNNCYEVYETLGIEAARNALYKELNGVIEMGGSYVNYRHLALL 1384
[212][TOP]
>UniRef100_A9QMG7 RNA polymerase 2 (Fragment) n=1 Tax=Distolabrellus veechi
RepID=A9QMG7_9BILA
Length = 583
Score = 126 bits (316), Expect = 1e-27
Identities = 76/177 (42%), Positives = 104/177 (58%), Gaps = 4/177 (2%)
Frame = +3
Query: 6 RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
RIHA FG L+V+ ++DNA +LV R+R+ ++ DK D++ +ME
Sbjct: 426 RIHAGFGEXLNVIYTDDNAXKLVFRIRITSQDTDKG--------------DSEEQVDKME 471
Query: 186 DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQ----DNKIVIDSVTGSFTKENEWL 353
D D+FLR +E +LS+LTL GI I KV+M + + K ++ + G F EWL
Sbjct: 472 D-----DMFLRCIEQNMLSDLTLQGIEQIAKVYMDKPTTDNKKRMVITPEGGFKAIPEWL 526
Query: 354 LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAY 524
LETDG + V+ +VD RT SNDI E FEVLGIEAVR + E+ VISFDG+Y
Sbjct: 527 LETDGTALLTVLAEPNVDPVRTSSNDICEIFEVLGIEAVRKAIEREMDQVISFDGSY 583
[213][TOP]
>UniRef100_Q6FQS9 DNA-directed RNA polymerase n=1 Tax=Candida glabrata
RepID=Q6FQS9_CANGA
Length = 1715
Score = 126 bits (316), Expect = 1e-27
Identities = 81/184 (44%), Positives = 107/184 (58%), Gaps = 1/184 (0%)
Frame = +3
Query: 6 RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
RI F DL V+ SEDNA +L+IR RV +P+ D AE E
Sbjct: 1215 RIKDTFKNDLFVIWSEDNAEKLIIRCRVV-------------RPKALD--------AETE 1253
Query: 186 DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKV-FMRQDNKIVIDSVTGSFTKENEWLLET 362
EED L+K+E+ +L N+TL GI GI++V M+ D K+ + TG + K EW+LET
Sbjct: 1254 AEEDH---MLKKIENTMLENITLRGIEGIERVVMMKYDRKV--PNETGEYQKVPEWVLET 1308
Query: 363 DGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNYRHL 542
DGVN VM VD TR +N ++ EVLGIEA RA L E+ VI+ DG+YVNYRH+
Sbjct: 1309 DGVNLSEVMTVPGVDPTRIYTNSFIDIMEVLGIEAGRAALYKEVYNVIASDGSYVNYRHM 1368
Query: 543 SVLV 554
++LV
Sbjct: 1369 ALLV 1372
[214][TOP]
>UniRef100_C7GKZ2 Rpo21p n=2 Tax=Saccharomyces cerevisiae RepID=C7GKZ2_YEAS2
Length = 1733
Score = 125 bits (314), Expect = 2e-27
Identities = 79/184 (42%), Positives = 106/184 (57%), Gaps = 1/184 (0%)
Frame = +3
Query: 6 RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
RI F DL V+ SEDN +L+IR RV +P+ D AE E
Sbjct: 1215 RIKQTFKNDLFVIWSEDNDEKLIIRCRVV-------------RPKSLD--------AETE 1253
Query: 186 DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKV-FMRQDNKIVIDSVTGSFTKENEWLLET 362
EED L+K+E+ +L N+TL G+ I++V M+ D K+ S TG + KE EW+LET
Sbjct: 1254 AEEDH---MLKKIENTMLENITLRGVENIERVVMMKYDRKV--PSPTGEYVKEPEWVLET 1308
Query: 363 DGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNYRHL 542
DGVN VM +D TR +N ++ EVLGIEA RA L E+ VI+ DG+YVNYRH+
Sbjct: 1309 DGVNLSEVMTVPGIDPTRIYTNSFIDIMEVLGIEAGRAALYKEVYNVIASDGSYVNYRHM 1368
Query: 543 SVLV 554
++LV
Sbjct: 1369 ALLV 1372
[215][TOP]
>UniRef100_B3LH31 DNA-directed RNA polymerase n=1 Tax=Saccharomyces cerevisiae RM11-1a
RepID=B3LH31_YEAS1
Length = 1733
Score = 125 bits (314), Expect = 2e-27
Identities = 79/184 (42%), Positives = 106/184 (57%), Gaps = 1/184 (0%)
Frame = +3
Query: 6 RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
RI F DL V+ SEDN +L+IR RV +P+ D AE E
Sbjct: 1215 RIKQTFKNDLFVIWSEDNDEKLIIRCRVV-------------RPKSLD--------AETE 1253
Query: 186 DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKV-FMRQDNKIVIDSVTGSFTKENEWLLET 362
EED L+K+E+ +L N+TL G+ I++V M+ D K+ S TG + KE EW+LET
Sbjct: 1254 AEEDH---MLKKIENTMLENITLRGVENIERVVMMKYDRKV--PSPTGEYVKEPEWVLET 1308
Query: 363 DGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNYRHL 542
DGVN VM +D TR +N ++ EVLGIEA RA L E+ VI+ DG+YVNYRH+
Sbjct: 1309 DGVNLSEVMTVPGIDPTRIYTNSFIDIMEVLGIEAGRAALYKEVYNVIASDGSYVNYRHM 1368
Query: 543 SVLV 554
++LV
Sbjct: 1369 ALLV 1372
[216][TOP]
>UniRef100_P04050 DNA-directed RNA polymerase II subunit RPB1 n=2 Tax=Saccharomyces
cerevisiae RepID=RPB1_YEAST
Length = 1733
Score = 125 bits (314), Expect = 2e-27
Identities = 79/184 (42%), Positives = 106/184 (57%), Gaps = 1/184 (0%)
Frame = +3
Query: 6 RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
RI F DL V+ SEDN +L+IR RV +P+ D AE E
Sbjct: 1215 RIKQTFKNDLFVIWSEDNDEKLIIRCRVV-------------RPKSLD--------AETE 1253
Query: 186 DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKV-FMRQDNKIVIDSVTGSFTKENEWLLET 362
EED L+K+E+ +L N+TL G+ I++V M+ D K+ S TG + KE EW+LET
Sbjct: 1254 AEEDH---MLKKIENTMLENITLRGVENIERVVMMKYDRKV--PSPTGEYVKEPEWVLET 1308
Query: 363 DGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNYRHL 542
DGVN VM +D TR +N ++ EVLGIEA RA L E+ VI+ DG+YVNYRH+
Sbjct: 1309 DGVNLSEVMTVPGIDPTRIYTNSFIDIMEVLGIEAGRAALYKEVYNVIASDGSYVNYRHM 1368
Query: 543 SVLV 554
++LV
Sbjct: 1369 ALLV 1372
[217][TOP]
>UniRef100_A7AWJ0 DNA-directed RNA polymerase n=1 Tax=Babesia bovis RepID=A7AWJ0_BABBO
Length = 1746
Score = 125 bits (313), Expect = 3e-27
Identities = 71/184 (38%), Positives = 105/184 (57%), Gaps = 1/184 (0%)
Frame = +3
Query: 3 NRIHAHFGGD-LHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAE 179
+RI+ F D + + ++DN ELV+R+RV N D +
Sbjct: 1228 DRIYQEFSNDEIDCIHTDDNNDELVLRIRVKYSNMD----------------------VD 1265
Query: 180 MEDEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQDNKIVIDSVTGSFTKENEWLLE 359
++ + E FL++ SQ+L N+ L G+ I KV+MR++ + + G F + ++W+L+
Sbjct: 1266 QQNMGENEGEFLQRFMSQVLVNVKLRGVSKITKVYMREEARTKYNETNGRFERVSQWVLD 1325
Query: 360 TDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNYRH 539
TDG N V+ VD +++SNDI E F VLGIEA R LL E+R VISFDG+YVNYRH
Sbjct: 1326 TDGCNLEDVLSIPCVDAQKSISNDISEIFHVLGIEAARMALLRELRAVISFDGSYVNYRH 1385
Query: 540 LSVL 551
LS+L
Sbjct: 1386 LSLL 1389
[218][TOP]
>UniRef100_C8Z6G2 Rpo21p n=1 Tax=Saccharomyces cerevisiae EC1118 RepID=C8Z6G2_YEAST
Length = 1733
Score = 124 bits (310), Expect = 6e-27
Identities = 78/184 (42%), Positives = 105/184 (57%), Gaps = 1/184 (0%)
Frame = +3
Query: 6 RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
RI F DL V+ SEDN +L+IR RV +P+ D AE E
Sbjct: 1215 RIKQTFKNDLFVIWSEDNDEKLIIRCRVV-------------RPKSLD--------AETE 1253
Query: 186 DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKV-FMRQDNKIVIDSVTGSFTKENEWLLET 362
EED L+K+E+ +L N+TL G+ I++V M+ D K+ S TG + KE EW+LET
Sbjct: 1254 AEEDH---MLKKIENTMLENITLRGVENIERVVMMKYDRKV--PSPTGEYVKEPEWVLET 1308
Query: 363 DGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNYRHL 542
DG N VM +D TR +N ++ EVLGIEA RA L E+ VI+ DG+YVNYRH+
Sbjct: 1309 DGANLSEVMTVPGIDPTRIYTNSFIDIMEVLGIEAGRAALYKEVYNVIASDGSYVNYRHM 1368
Query: 543 SVLV 554
++LV
Sbjct: 1369 ALLV 1372
[219][TOP]
>UniRef100_B9FZ52 Putative uncharacterized protein n=1 Tax=Oryza sativa Japonica
Group RepID=B9FZ52_ORYSJ
Length = 208
Score = 123 bits (309), Expect = 8e-27
Identities = 60/107 (56%), Positives = 80/107 (74%)
Frame = +3
Query: 231 QLLSNLTLSGIPGIDKVFMRQDNKIVIDSVTGSFTKENEWLLETDGVNFIAVMGHEDVDF 410
++L+ + L GIP I+KVF++ + G F +NEW+L+T+GVN +AVM HEDVD
Sbjct: 5 RILTEMALRGIPDINKVFIKYGKVNKFEDNVG-FKADNEWMLDTEGVNLLAVMCHEDVDA 63
Query: 411 TRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNYRHLSVL 551
TRT SN ++E EVLGIEAVR LL+E+R VISFDG+YVNYRHL++L
Sbjct: 64 TRTTSNHLIEVIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAIL 110
[220][TOP]
>UniRef100_C5L610 DNA-directed RNA polymerase II largest subunit, putative (Fragment)
n=1 Tax=Perkinsus marinus ATCC 50983 RepID=C5L610_9ALVE
Length = 125
Score = 122 bits (306), Expect = 2e-26
Identities = 60/101 (59%), Positives = 73/101 (72%)
Frame = +3
Query: 249 TLSGIPGIDKVFMRQDNKIVIDSVTGSFTKENEWLLETDGVNFIAVMGHEDVDFTRTVSN 428
T GIPG+ K +MRQDNK+ + G+F + EW+L+TDG N V+ E VD TRT SN
Sbjct: 10 TSRGIPGVTKCYMRQDNKVQYGNDVGTFARSREWVLDTDGCNLEQVLTMEAVDSTRTSSN 69
Query: 429 DIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNYRHLSVL 551
DIVE VLGI+A R LLNE+R VISFDG+YVNYRH+SVL
Sbjct: 70 DIVEILNVLGIKACRKALLNELRQVISFDGSYVNYRHMSVL 110
[221][TOP]
>UniRef100_UPI0000D9E5AB PREDICTED: similar to DNA-directed RNA polymerase II largest
subunit (RPB1) n=1 Tax=Macaca mulatta
RepID=UPI0000D9E5AB
Length = 259
Score = 122 bits (305), Expect = 2e-26
Identities = 64/121 (52%), Positives = 84/121 (69%), Gaps = 4/121 (3%)
Frame = +3
Query: 201 EDLFLRKVESQLLSNLTLSGIPGIDKVFMR----QDNKIVIDSVTGSFTKENEWLLETDG 368
+D+FLR +ES +L+++TL GI I KV+M + K +I + G F EW+LETDG
Sbjct: 3 DDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWILETDG 62
Query: 369 VNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNYRHLSV 548
V+ + V+ +DVD RT SNDIVE F VLGIEAVR L E+ VISFDG+YVNYRHL++
Sbjct: 63 VSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLAL 122
Query: 549 L 551
L
Sbjct: 123 L 123
[222][TOP]
>UniRef100_B6H9U6 DNA-directed RNA polymerase n=1 Tax=Penicillium chrysogenum Wisconsin
54-1255 RepID=B6H9U6_PENCW
Length = 1733
Score = 122 bits (305), Expect = 2e-26
Identities = 71/188 (37%), Positives = 107/188 (56%), Gaps = 5/188 (2%)
Frame = +3
Query: 6 RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
RI + D+ V+ S++NA E VIR+R + +D E
Sbjct: 1230 RIKQAYPRDIAVIFSDNNADEQVIRIRQVQDYKDD------------------------E 1265
Query: 186 DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQDNKI-VIDSVTGSFTKEN----EW 350
DE+ D+ L+K+E LL LTL G+PG+D+ F+ + +K+ V++ T +K + EW
Sbjct: 1266 DEDIEYDVTLKKLEQHLLDTLTLRGVPGVDRAFINEKSKVRVVEDGTLHTSKSDPLCKEW 1325
Query: 351 LLETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVN 530
+LET G + AV+ VD +RT SN +E FEV GIEA R +L E+ V++FDG+YVN
Sbjct: 1326 VLETSGSSLAAVLAIPGVDASRTYSNQFIEIFEVFGIEAARTAVLRELTLVLAFDGSYVN 1385
Query: 531 YRHLSVLV 554
+RHL++LV
Sbjct: 1386 HRHLALLV 1393
[223][TOP]
>UniRef100_C5DXL0 DNA-directed RNA polymerase n=1 Tax=Zygosaccharomyces rouxii CBS 732
RepID=C5DXL0_ZYGRC
Length = 1744
Score = 121 bits (303), Expect = 4e-26
Identities = 76/184 (41%), Positives = 106/184 (57%), Gaps = 1/184 (0%)
Frame = +3
Query: 6 RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
+I F DL V+ SEDNA +L+IR RV +P+ D +E
Sbjct: 1215 KIKETFKNDLFVIWSEDNAEQLIIRCRVV-------------RPKSMD----------LE 1251
Query: 186 DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKV-FMRQDNKIVIDSVTGSFTKENEWLLET 362
E + ED L+K+E+ +L N+TL G+ I++V M+ D K+ S TG + K EW+LET
Sbjct: 1252 TEAE-EDHMLKKIENTMLENITLRGVENIERVVMMKYDRKV--PSETGEYQKIPEWVLET 1308
Query: 363 DGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNYRHL 542
DGVN VM VD +R +N ++ EVLGIEA RA L E+ VI+ DG+YVNYRH+
Sbjct: 1309 DGVNLSEVMTVPGVDASRIYTNSFIDIMEVLGIEAGRAALYKEVFNVIASDGSYVNYRHM 1368
Query: 543 SVLV 554
++LV
Sbjct: 1369 ALLV 1372
[224][TOP]
>UniRef100_Q86G96 RNA polymerase II large subunit (Fragment) n=1 Tax=Brugia malayi
RepID=Q86G96_BRUMA
Length = 282
Score = 119 bits (299), Expect = 1e-25
Identities = 75/172 (43%), Positives = 99/172 (57%), Gaps = 4/172 (2%)
Frame = +3
Query: 3 NRIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEM 182
++IH FG DL+V+ ++DNA +LV R+R+ + DK EDEQ M
Sbjct: 130 DKIHQGFGDDLNVIYTDDNAEKLVFRLRITNQEGDKGN---------EDEQ-----VERM 175
Query: 183 EDEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQ----DNKIVIDSVTGSFTKENEW 350
ED D+FLR +E+ +LS+LTL GI I KV+M + D K V+ + G F EW
Sbjct: 176 ED-----DVFLRCIETNMLSDLTLQGIEAITKVYMHKPTTDDKKRVVITPDGGFKAIPEW 230
Query: 351 LLETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVI 506
LLETDG V+ ++VD RT SNDI E FEVLGIEAVR + E+ VI
Sbjct: 231 LLETDGTALAKVLSEQNVDPIRTTSNDICEIFEVLGIEAVRKAIEREMNHVI 282
[225][TOP]
>UniRef100_C8VQG7 DNA-directed RNA polymerase (EC 2.7.7.6)
[Source:UniProtKB/TrEMBL;Acc:Q873Q6] n=2 Tax=Emericella
nidulans RepID=C8VQG7_EMENI
Length = 1745
Score = 119 bits (299), Expect = 1e-25
Identities = 72/190 (37%), Positives = 104/190 (54%), Gaps = 7/190 (3%)
Frame = +3
Query: 6 RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
+I + D+ V+ S++NA E VIR+R + + E E
Sbjct: 1234 KIKQAYPRDIAVIFSDNNADEQVIRIRQIQDYK------------------------EDE 1269
Query: 186 DEEDAE-DLFLRKVESQLLSNLTLSGIPGIDKVFMRQDNKIVIDSVTGSFTKEN------ 344
D++D E D+ L+K+E LL L L G+PG+++ F+ + KI + G+ T E
Sbjct: 1270 DDDDIEYDVTLKKLEQHLLDTLNLRGVPGVERAFINEKKKIRVQE-DGALTDEQSDPLCR 1328
Query: 345 EWLLETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAY 524
EW+LET G + V+ VD TRT SN +E FEV GIEA RA +L E V+SFDG+Y
Sbjct: 1329 EWILETSGSSLAEVLAIPGVDATRTYSNQFIEVFEVFGIEAARAAVLREFTVVLSFDGSY 1388
Query: 525 VNYRHLSVLV 554
VN+RHL++LV
Sbjct: 1389 VNHRHLALLV 1398
[226][TOP]
>UniRef100_A7TTU2 DNA-directed RNA polymerase (Fragment) n=1 Tax=Vanderwaltozyma
polyspora DSM 70294 RepID=A7TTU2_VANPO
Length = 1311
Score = 119 bits (299), Expect = 1e-25
Identities = 77/184 (41%), Positives = 107/184 (58%), Gaps = 1/184 (0%)
Frame = +3
Query: 6 RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
+I F DL V+ SEDNA +L+IR RV +P+ D AE E
Sbjct: 897 KIKETFKNDLFVIWSEDNADKLIIRCRVV-------------RPKSLD--------AETE 935
Query: 186 DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKV-FMRQDNKIVIDSVTGSFTKENEWLLET 362
EED L+K+E+ +L ++TL G+ I++V M+ D K+ S G++ K EW+LET
Sbjct: 936 AEEDH---MLKKIENTMLESITLRGVEDIERVVMMKYDRKM--PSENGAYEKVPEWVLET 990
Query: 363 DGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNYRHL 542
DGVN + VM VD TR +N ++ EVLGIEA RA L E+ VI+ DG+YVNYRH+
Sbjct: 991 DGVNLLEVMTVTGVDPTRIYTNSFIDITEVLGIEAGRAALYREVYNVIASDGSYVNYRHM 1050
Query: 543 SVLV 554
++LV
Sbjct: 1051 ALLV 1054
[227][TOP]
>UniRef100_Q75A34 DNA-directed RNA polymerase II subunit RPB1 n=1 Tax=Eremothecium
gossypii RepID=RPB1_ASHGO
Length = 1745
Score = 119 bits (299), Expect = 1e-25
Identities = 76/184 (41%), Positives = 103/184 (55%), Gaps = 1/184 (0%)
Frame = +3
Query: 6 RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
+I F DL V+ SEDNA +L+IR RV +D + AE E
Sbjct: 1215 KIKETFKNDLFVIWSEDNAEKLIIRCRVV--------------------RDPKTLDAEAE 1254
Query: 186 DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKV-FMRQDNKIVIDSVTGSFTKENEWLLET 362
EED L+K+E+ +L ++TL G+ I +V M+ D K+ S TG + K EW+LET
Sbjct: 1255 AEEDH---MLKKIENTMLESITLRGVQDITRVVMMKYDRKV--PSETGEYHKIPEWVLET 1309
Query: 363 DGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNYRHL 542
DGVN VM VD TR +N ++ VLGIEA RA L E+ VI+ DG+YVNYRH+
Sbjct: 1310 DGVNLSEVMSVPGVDPTRIYTNSFIDIMNVLGIEAGRAALYKEVYNVIASDGSYVNYRHM 1369
Query: 543 SVLV 554
++LV
Sbjct: 1370 ALLV 1373
[228][TOP]
>UniRef100_A9QMS3 RNA polymerase 2 (Fragment) n=1 Tax=Pelodera punctata
RepID=A9QMS3_9PELO
Length = 363
Score = 119 bits (297), Expect = 2e-25
Identities = 73/167 (43%), Positives = 98/167 (58%), Gaps = 4/167 (2%)
Frame = +3
Query: 6 RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
RIH FG DL+V+ ++DNA +LV R+R+ ++ DK E E+ D+ ME
Sbjct: 214 RIHQGFGDDLNVIYTDDNADKLVFRLRITNQDADKG----------ETEESVDK----ME 259
Query: 186 DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQ----DNKIVIDSVTGSFTKENEWL 353
D D+FLR +ES +LS+LTL GI I KV+M + D K ++ + G F EWL
Sbjct: 260 D-----DVFLRCIESNMLSDLTLQGIEAISKVYMHKPTTDDKKRMVITPEGGFKAIPEWL 314
Query: 354 LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEI 494
LETDG + V+ + VD RT SNDI E FEVLGIEAVR + E+
Sbjct: 315 LETDGTALLRVLAEQSVDPVRTSSNDICEIFEVLGIEAVRKAIEREM 361
[229][TOP]
>UniRef100_Q0U9K8 DNA-directed RNA polymerase n=1 Tax=Phaeosphaeria nodorum
RepID=Q0U9K8_PHANO
Length = 1720
Score = 119 bits (297), Expect = 2e-25
Identities = 68/187 (36%), Positives = 111/187 (59%), Gaps = 5/187 (2%)
Frame = +3
Query: 9 IHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEMED 188
I F +L V+ S++NA E V+RVR + K +D+ ED
Sbjct: 1234 IKREFSPNLAVIFSDENADEQVMRVRFIWDGNLK-----------QDD----------ED 1272
Query: 189 EEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQDNKIVIDS-----VTGSFTKENEWL 353
E++ ++ ++RK+E+ LL + L G+ G+++ F+R+DN +V++ ++ S + EW+
Sbjct: 1273 EDERDERWMRKLETHLLDGVVLRGLKGVERAFIREDNVVVMNEDRSLVLSKSDPRCKEWV 1332
Query: 354 LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
L+T G + V+ E VD T+T SN +E VLGIEA RA LL+E+ V+SFDG+YVN+
Sbjct: 1333 LDTTGTSLAEVLAVEGVDGTKTYSNSFIEILGVLGIEAARAGLLHELGMVLSFDGSYVNH 1392
Query: 534 RHLSVLV 554
RH+++LV
Sbjct: 1393 RHMALLV 1399
[230][TOP]
>UniRef100_A2QAT7 DNA-directed RNA polymerase n=1 Tax=Aspergillus niger CBS 513.88
RepID=A2QAT7_ASPNC
Length = 1747
Score = 119 bits (297), Expect = 2e-25
Identities = 70/189 (37%), Positives = 106/189 (56%), Gaps = 5/189 (2%)
Frame = +3
Query: 3 NRIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEM 182
+RI A + D+ V+ S++NA E VIR+R + + EDE
Sbjct: 1232 SRIKAAYPKDIAVIFSDNNADEQVIRIRQIQDYK-------------EDE---------- 1268
Query: 183 EDEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQDNKIVIDSVTGSFTKEN-----E 347
ED++ D+ L+K+E LL LTL G+PG+++ F+ + +K+ + F + E
Sbjct: 1269 EDDDIEYDVTLKKLEQHLLDTLTLRGVPGVERAFINEKSKVRVLEDGSLFASKTDPLCKE 1328
Query: 348 WLLETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYV 527
W+LET G + V+ VD TRT SN +E FEV GIEA R +L E+ V++FDG+YV
Sbjct: 1329 WVLETSGSSLGEVLAIPGVDATRTYSNQFIEVFEVFGIEAARTAVLRELTQVLAFDGSYV 1388
Query: 528 NYRHLSVLV 554
N+RHL++LV
Sbjct: 1389 NHRHLALLV 1397
[231][TOP]
>UniRef100_B6QAY2 DNA-directed RNA polymerase n=1 Tax=Penicillium marneffei ATCC 18224
RepID=B6QAY2_PENMQ
Length = 1744
Score = 118 bits (295), Expect = 3e-25
Identities = 74/189 (39%), Positives = 106/189 (56%), Gaps = 6/189 (3%)
Frame = +3
Query: 6 RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
RI + D+ V+ S++NA E VIR+R + A E E
Sbjct: 1235 RIKQQYPRDIAVIFSDNNADEQVIRIRQLHD------------------------AKEDE 1270
Query: 186 DEEDAE-DLFLRKVESQLLSNLTLSGIPGIDKVFMRQ-DNKIVIDSVTGSFTKEN----E 347
DEED E D+ L+K+E LL LTL G+ G+++ F+ + DN ++D + +K + E
Sbjct: 1271 DEEDMEYDVTLKKLEQHLLDTLTLRGVSGVERAFINEKDNARLMDDGSLFLSKADPLCKE 1330
Query: 348 WLLETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYV 527
W+LET G V+ VD TRT SN +E FEV GIEA R+ LL E+ V++FDG+YV
Sbjct: 1331 WVLETSGTALADVLTIPGVDTTRTYSNQFIEVFEVFGIEAARSALLRELTQVLAFDGSYV 1390
Query: 528 NYRHLSVLV 554
N+RHL++LV
Sbjct: 1391 NHRHLALLV 1399
[232][TOP]
>UniRef100_Q6CL79 DNA-directed RNA polymerase n=1 Tax=Kluyveromyces lactis
RepID=Q6CL79_KLULA
Length = 1720
Score = 117 bits (294), Expect = 4e-25
Identities = 74/184 (40%), Positives = 103/184 (55%), Gaps = 1/184 (0%)
Frame = +3
Query: 6 RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
+I F DL V+ SEDNA +L+IR RV +D + A++E
Sbjct: 1215 KIKETFKNDLFVIWSEDNAEKLIIRCRVI--------------------RDPKTLDADVE 1254
Query: 186 DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKV-FMRQDNKIVIDSVTGSFTKENEWLLET 362
EED L+K+E+ +L +TL G+ I +V M+ D K+ S TG + K EW+LET
Sbjct: 1255 AEEDH---MLKKIENSMLEKITLRGVEDITRVVMMKYDRKV--PSETGEYHKVPEWVLET 1309
Query: 363 DGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNYRHL 542
DGVN VM VD +R +N ++ VLGIEA RA L E+ VI+ DG+YVNYRH+
Sbjct: 1310 DGVNLSEVMTVSGVDGSRIYTNSFIDIMNVLGIEAGRAALYREVYNVIASDGSYVNYRHM 1369
Query: 543 SVLV 554
++LV
Sbjct: 1370 ALLV 1373
[233][TOP]
>UniRef100_Q0D054 DNA-directed RNA polymerase n=1 Tax=Aspergillus terreus NIH2624
RepID=Q0D054_ASPTN
Length = 1742
Score = 117 bits (294), Expect = 4e-25
Identities = 69/189 (36%), Positives = 104/189 (55%), Gaps = 6/189 (3%)
Frame = +3
Query: 6 RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
RI + D+ V+ S++NA E VIR+R + +D E
Sbjct: 1235 RIKQAYPKDIAVIFSDNNADEQVIRIRQIQDYKDD------------------------E 1270
Query: 186 DEEDAE-DLFLRKVESQLLSNLTLSGIPGIDKVFMRQDNKIVIDSVTGSFTKEN-----E 347
D++D E D+ L+K+E LL LTL G+PG+++ F+ + +K+ + F + E
Sbjct: 1271 DDDDIEYDVTLKKLEQHLLDTLTLRGVPGVERAFINEKSKVRVLEDGSLFVSKTDPLCKE 1330
Query: 348 WLLETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYV 527
W+LET G + V+ VD TRT SN +E FEV GIEA R +L E+ V++FDG+YV
Sbjct: 1331 WVLETSGSSLGEVLAIPGVDATRTYSNQFIEVFEVFGIEAARTAVLRELTQVLAFDGSYV 1390
Query: 528 NYRHLSVLV 554
N+RHL++LV
Sbjct: 1391 NHRHLALLV 1399
[234][TOP]
>UniRef100_Q2HDK0 DNA-directed RNA polymerase n=1 Tax=Chaetomium globosum
RepID=Q2HDK0_CHAGB
Length = 1756
Score = 117 bits (293), Expect = 6e-25
Identities = 66/188 (35%), Positives = 111/188 (59%), Gaps = 5/188 (2%)
Frame = +3
Query: 6 RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
RI + D+ V+ S++NA E++IR+RV +++DK ++D +++ +E
Sbjct: 1231 RIKEEYKKDVAVIFSDNNAEEMIIRIRVIRQDDDK-------------DEDGNKI---IE 1274
Query: 186 DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQDNKIVI----DSVTGSFTKE-NEW 350
D D+ L+++E LL N TL G+PGI++ F+ + ++V+ V T E EW
Sbjct: 1275 D-----DVMLKRLEKHLLDNCTLRGVPGIERAFLNKGTRLVVMPDGSQVANKDTPECMEW 1329
Query: 351 LLETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVN 530
L+T G V+ + VD RT +ND+ + +V GIEA R+ L+ E+ V++FDG+YVN
Sbjct: 1330 YLDTQGTTLRDVLTIDGVDTKRTSTNDLYQIVDVFGIEAARSALMQELTQVLAFDGSYVN 1389
Query: 531 YRHLSVLV 554
+RHL++LV
Sbjct: 1390 HRHLALLV 1397
[235][TOP]
>UniRef100_C5E245 DNA-directed RNA polymerase n=1 Tax=Lachancea thermotolerans CBS 6340
RepID=C5E245_LACTC
Length = 1740
Score = 116 bits (290), Expect = 1e-24
Identities = 74/184 (40%), Positives = 102/184 (55%), Gaps = 1/184 (0%)
Frame = +3
Query: 6 RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
+I F DL V+ SEDNA +L+IR RV +D + AE E
Sbjct: 1215 KIKETFKNDLFVIWSEDNAEKLIIRCRVV--------------------RDPKTLDAEAE 1254
Query: 186 DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKV-FMRQDNKIVIDSVTGSFTKENEWLLET 362
EED L+++E+ +L ++TL G+ I +V M+ D K+ S TG + K EW+LET
Sbjct: 1255 AEEDH---MLKRIENTMLESITLRGVEDITRVVMMKYDRKV--PSPTGEYHKVPEWVLET 1309
Query: 363 DGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNYRHL 542
DGVN VM VD R +N ++ VLGIEA RA L E+ VI+ DG+YVNYRH+
Sbjct: 1310 DGVNLAEVMCVPGVDPARIYTNSFIDIMNVLGIEAGRAALYKEVYNVIASDGSYVNYRHM 1369
Query: 543 SVLV 554
++LV
Sbjct: 1370 ALLV 1373
[236][TOP]
>UniRef100_Q4SF83 DNA-directed RNA polymerase (Fragment) n=1 Tax=Tetraodon nigroviridis
RepID=Q4SF83_TETNG
Length = 1745
Score = 115 bits (288), Expect = 2e-24
Identities = 72/180 (40%), Positives = 103/180 (57%), Gaps = 30/180 (16%)
Frame = +3
Query: 102 EDKAGISDSTKPRFEDEQDADRVAAEMEDEEDAEDLFLRKVESQLLSNLTLSGIPGIDKV 281
ED+ I +S + +F+++++ V +M+D D+FLR +ES +L+++TL GI I KV
Sbjct: 1143 EDQCRIMNSDEYKFQEDEE---VVDKMDD-----DVFLRCIESNMLTDMTLQGIEQISKV 1194
Query: 282 FMR----QDNKIVIDSVTGSFTKENEWLLETDGVNFIAVMGHEDVDFTRTVSNDIVET-- 443
+M + K +I + G F EW+LETDGV+ + V+ +DVD RT SNDIVE
Sbjct: 1195 YMHLPQTDNKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFT 1254
Query: 444 ------------------------FEVLGIEAVRATLLNEIRTVISFDGAYVNYRHLSVL 551
F+VLGIEAVR L E+ VISFDG+YVNYRHL++L
Sbjct: 1255 VIQSLSCLIGLRELFDGDRVPSSGFQVLGIEAVRKALERELYHVISFDGSYVNYRHLALL 1314
[237][TOP]
>UniRef100_Q9HGZ5 DNA-directed RNA polymerase n=2 Tax=Aspergillus RepID=Q9HGZ5_ASPOR
Length = 1748
Score = 115 bits (287), Expect = 3e-24
Identities = 69/189 (36%), Positives = 104/189 (55%), Gaps = 6/189 (3%)
Frame = +3
Query: 6 RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
RI + D+ V+ S++NA E VIR+R +++ E E
Sbjct: 1234 RIKQAYPKDIAVIFSDNNADEQVIRIRQIQDHK------------------------EDE 1269
Query: 186 DEEDAE-DLFLRKVESQLLSNLTLSGIPGIDKVFMRQDNKIVIDSVTGSFTKE-----NE 347
D++D E D+ L+K+E LL LTL G+ G+++ F+ + +K+ + FT + E
Sbjct: 1270 DDDDIEYDVTLKKLEQHLLDTLTLRGVNGVERAFINEKSKVRVLEDGSLFTSKVDPLCKE 1329
Query: 348 WLLETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYV 527
W+LET G V+ VD TRT SN +E FEV GIEA R +L E+ V++FDG+YV
Sbjct: 1330 WVLETSGSALGEVLAVPGVDATRTYSNQFIEVFEVFGIEAARTAVLRELTQVLAFDGSYV 1389
Query: 528 NYRHLSVLV 554
N+RHL++LV
Sbjct: 1390 NHRHLALLV 1398
[238][TOP]
>UniRef100_B0XMU6 DNA-directed RNA polymerase n=2 Tax=Aspergillus fumigatus
RepID=B0XMU6_ASPFC
Length = 1750
Score = 113 bits (283), Expect = 8e-24
Identities = 68/189 (35%), Positives = 103/189 (54%), Gaps = 6/189 (3%)
Frame = +3
Query: 6 RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
+I + D+ V+ S++NA E VIR+R + + E E
Sbjct: 1234 KIKQAYPKDIAVIFSDNNADEQVIRIRQIQDYK------------------------EDE 1269
Query: 186 DEEDAE-DLFLRKVESQLLSNLTLSGIPGIDKVFMRQDNKIVIDSVTGSFTKEN-----E 347
D+ED E D+ L+K+E LL LTL G+ G+++ F+ + +K+ + F + E
Sbjct: 1270 DDEDIEYDVTLKKLEQHLLDTLTLRGVQGVERAFINEKSKVRVLEDGSLFASKTDPLCKE 1329
Query: 348 WLLETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYV 527
W+LET G + V+ VD TRT SN +E FEV GIEA R +L E+ V++FDG+YV
Sbjct: 1330 WVLETSGSSLGEVLAVPGVDATRTYSNQFIEVFEVFGIEAARTAVLRELTQVLAFDGSYV 1389
Query: 528 NYRHLSVLV 554
N+RHL++LV
Sbjct: 1390 NHRHLALLV 1398
[239][TOP]
>UniRef100_A1D1U9 DNA-directed RNA polymerase n=1 Tax=Neosartorya fischeri NRRL 181
RepID=A1D1U9_NEOFI
Length = 1750
Score = 113 bits (283), Expect = 8e-24
Identities = 68/189 (35%), Positives = 103/189 (54%), Gaps = 6/189 (3%)
Frame = +3
Query: 6 RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
+I + D+ V+ S++NA E VIR+R + + E E
Sbjct: 1234 KIKQAYPKDIAVIFSDNNADEQVIRIRQIQDYK------------------------EDE 1269
Query: 186 DEEDAE-DLFLRKVESQLLSNLTLSGIPGIDKVFMRQDNKIVIDSVTGSFTKEN-----E 347
D+ED E D+ L+K+E LL LTL G+ G+++ F+ + +K+ + F + E
Sbjct: 1270 DDEDIEYDVTLKKLEQHLLDTLTLRGVQGVERAFINEKSKVRVLEDGSLFASKTDPLCKE 1329
Query: 348 WLLETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYV 527
W+LET G + V+ VD TRT SN +E FEV GIEA R +L E+ V++FDG+YV
Sbjct: 1330 WVLETSGSSLGEVLAVPGVDATRTYSNQFIEVFEVFGIEAARTAVLRELTQVLAFDGSYV 1389
Query: 528 NYRHLSVLV 554
N+RHL++LV
Sbjct: 1390 NHRHLALLV 1398
[240][TOP]
>UniRef100_B8M2Y2 DNA-directed RNA polymerase n=1 Tax=Talaromyces stipitatus ATCC 10500
RepID=B8M2Y2_TALSN
Length = 1755
Score = 112 bits (281), Expect = 1e-23
Identities = 69/189 (36%), Positives = 101/189 (53%), Gaps = 6/189 (3%)
Frame = +3
Query: 6 RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
RI + D+ V+ S++NA E VIR+R + A E E
Sbjct: 1235 RIKEQYPRDIAVIFSDNNADEQVIRIRQLHD------------------------AKEDE 1270
Query: 186 DEEDAE-DLFLRKVESQLLSNLTLSGIPGIDKVFMRQDNKIVIDSVTGSFTKEN-----E 347
DEED E D+ L+K+E LL LTL G+ G+++ F+ + + + + F + E
Sbjct: 1271 DEEDMEYDVTLKKLEQHLLDTLTLRGVAGVERAFINEKDNVRVMEDGSLFQSKTDPLCKE 1330
Query: 348 WLLETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYV 527
W+LET G V+ VD +RT SN +E FEV GIEA R +L E+ V++FDG+YV
Sbjct: 1331 WVLETSGSALADVLTIPGVDTSRTYSNQFIEVFEVFGIEAARTAVLRELTQVLAFDGSYV 1390
Query: 528 NYRHLSVLV 554
N+RHL++LV
Sbjct: 1391 NHRHLALLV 1399
[241][TOP]
>UniRef100_Q9BMP2 DNA-directed RNA polymerase (Fragment) n=1 Tax=Stylonychia mytilus
RepID=Q9BMP2_STYMT
Length = 1678
Score = 112 bits (280), Expect = 2e-23
Identities = 71/184 (38%), Positives = 104/184 (56%), Gaps = 2/184 (1%)
Frame = +3
Query: 6 RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
+I+ F + V+ S++NA +LV+R+RV D +D
Sbjct: 1129 KINDIFRDQIDVVKSDENAEKLVLRLRV------------------NDIED--------- 1161
Query: 186 DEEDAED-LFLRKVESQLLSNLTLSGIPGIDKVFMRQDNKIVIDSVTGSFTKENE-WLLE 359
DEED ++L+ + +L ++L L G+ I KV + N + D TG ++ E WL+E
Sbjct: 1162 DEEDRTVCMYLKGFQDELFNDLALKGLHEISKVTFTKYNDEIFDVETGECKQDKECWLIE 1221
Query: 360 TDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNYRH 539
TDGV V+G E +++ +TVSNDI+E VLGIEAVR +L+NE+R V+S G YVNYRH
Sbjct: 1222 TDGVALQKVLGLEGINYKKTVSNDIIEILRVLGIEAVRMSLINELRFVLSSYGIYVNYRH 1281
Query: 540 LSVL 551
LS L
Sbjct: 1282 LSTL 1285
[242][TOP]
>UniRef100_C5LGU4 DNA-directed RNA polymerase II largest subunit, putative n=1
Tax=Perkinsus marinus ATCC 50983 RepID=C5LGU4_9ALVE
Length = 280
Score = 111 bits (278), Expect = 3e-23
Identities = 55/89 (61%), Positives = 65/89 (73%)
Frame = +3
Query: 285 MRQDNKIVIDSVTGSFTKENEWLLETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIE 464
MRQDN++ S G+F + EW+L+TDG N V+ E VD TRT SNDIVE VLGIE
Sbjct: 1 MRQDNRVQYSSDVGTFARSREWVLDTDGCNLEQVLTMEAVDSTRTFSNDIVEILNVLGIE 60
Query: 465 AVRATLLNEIRTVISFDGAYVNYRHLSVL 551
A R LLNE+R VISFDG+YVNYRH+SVL
Sbjct: 61 ACRKALLNELRQVISFDGSYVNYRHMSVL 89
[243][TOP]
>UniRef100_A1CNZ4 DNA-directed RNA polymerase n=1 Tax=Aspergillus clavatus
RepID=A1CNZ4_ASPCL
Length = 1765
Score = 111 bits (277), Expect = 4e-23
Identities = 66/188 (35%), Positives = 103/188 (54%), Gaps = 5/188 (2%)
Frame = +3
Query: 6 RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
RI + D+ V+ S++NA E VIR+R + + EDE+
Sbjct: 1236 RIKQAYPKDIAVIFSDNNADEQVIRIRQIQDYK-------------EDEE---------H 1273
Query: 186 DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQDNKIVIDSVTGSFTKEN-----EW 350
D++ D+ L+K+E LL LTL G+ G+++ F+ + +K+ + F + EW
Sbjct: 1274 DDDIEYDVTLKKLEQHLLDTLTLRGVQGVERAFINEKSKVRVLEDGSLFASKTDPLCKEW 1333
Query: 351 LLETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVN 530
+LET G + V+ VD +RT SN +E FEV GIEA R +L E+ V++FDG+YVN
Sbjct: 1334 VLETSGSSLGEVLAVPGVDASRTYSNQFIEVFEVFGIEAARTAVLRELTQVLAFDGSYVN 1393
Query: 531 YRHLSVLV 554
+RHL++LV
Sbjct: 1394 HRHLALLV 1401
[244][TOP]
>UniRef100_B2W4S0 DNA-directed RNA polymerase n=1 Tax=Pyrenophora tritici-repentis
Pt-1C-BFP RepID=B2W4S0_PYRTR
Length = 1742
Score = 110 bits (275), Expect = 7e-23
Identities = 66/190 (34%), Positives = 105/190 (55%), Gaps = 7/190 (3%)
Frame = +3
Query: 6 RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
+I F +L V+ S++NA E V+RVR + + + E
Sbjct: 1226 KIKEEFKPNLAVIFSDENADEQVMRVRFIWDQN---------------------LTKDDE 1264
Query: 186 DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQ-------DNKIVIDSVTGSFTKEN 344
DE++ ++ ++RK+E LL ++TL G+PG+++ F+R+ D+ ++ S + KE
Sbjct: 1265 DEDERDERWMRKLEQHLLDDVTLRGVPGVERAFIREHCVTKKRDDGSLLHSKSSPECKE- 1323
Query: 345 EWLLETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAY 524
W+L+T G V+ VD T T SN +E VLGIEA RA LL E+ V+SFDG+Y
Sbjct: 1324 -WVLDTTGTALAEVLSIPGVDATTTYSNSFIEILAVLGIEAARAGLLKELGMVLSFDGSY 1382
Query: 525 VNYRHLSVLV 554
VN+RH+++LV
Sbjct: 1383 VNHRHMALLV 1392
[245][TOP]
>UniRef100_B2AA31 DNA-directed RNA polymerase n=1 Tax=Podospora anserina
RepID=B2AA31_PODAN
Length = 1748
Score = 110 bits (275), Expect = 7e-23
Identities = 68/188 (36%), Positives = 108/188 (57%), Gaps = 6/188 (3%)
Frame = +3
Query: 9 IHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEMED 188
I + D+ V+ S++NA E+V+R+RV +N+DK DAD +ED
Sbjct: 1231 IKQEYKKDVAVIFSDNNAEEMVVRIRVIRQNDDK---------------DADGNTI-IED 1274
Query: 189 EEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQDNKIVI---DSVTGSFTKE---NEW 350
D+ L+++E LL + TL G+ GI++ F+ + +++ S T + KE EW
Sbjct: 1275 -----DVMLKRLEKHLLDSCTLRGVEGIERAFLNKTARLLELPDGSQTANKDKEPACEEW 1329
Query: 351 LLETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVN 530
L+T G V+ E VD TRT +ND+ + +V GIEA R+ L+ E+ V++FDG+YVN
Sbjct: 1330 YLDTQGTALREVLTVEGVDTTRTYTNDLYQVVDVFGIEAARSALMAELTQVLAFDGSYVN 1389
Query: 531 YRHLSVLV 554
+RHL++LV
Sbjct: 1390 HRHLALLV 1397
[246][TOP]
>UniRef100_UPI000023F34A hypothetical protein FG00916.1 n=1 Tax=Gibberella zeae PH-1
RepID=UPI000023F34A
Length = 1758
Score = 109 bits (273), Expect = 1e-22
Identities = 68/188 (36%), Positives = 105/188 (55%), Gaps = 5/188 (2%)
Frame = +3
Query: 6 RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
RI + DL V+ S++NA E VIR+R + DK +D+ D R ME
Sbjct: 1229 RIKEEYPTDLAVIFSDNNADEQVIRIRT-IHTGDK-----------DDDGDGGR----ME 1272
Query: 186 DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQDNKIVIDSVTGSFTKENE-----W 350
D D+ L+++E+ LL LTL G+PGI++ F+ + K+ D +++ W
Sbjct: 1273 D-----DVMLKRLEAHLLDTLTLRGVPGIERAFLTKGTKLSEDDDGALLAIKDDPRCTQW 1327
Query: 351 LLETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVN 530
L+T G V+ + VD TRT +ND+ + EV GIEA R+ L E+ V++FDG+YVN
Sbjct: 1328 YLDTSGTALRDVLAVDGVDATRTYTNDLYQIVEVFGIEAARSALAKELTNVLAFDGSYVN 1387
Query: 531 YRHLSVLV 554
+RH+++LV
Sbjct: 1388 HRHIALLV 1395
[247][TOP]
>UniRef100_Q7SDN0 DNA-directed RNA polymerase n=1 Tax=Neurospora crassa
RepID=Q7SDN0_NEUCR
Length = 1752
Score = 109 bits (273), Expect = 1e-22
Identities = 65/189 (34%), Positives = 109/189 (57%), Gaps = 6/189 (3%)
Frame = +3
Query: 3 NRIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEM 182
+RI + D+ V+ S++NA E+VIR+RV ++DK ++D +++ +
Sbjct: 1233 HRIKEVYKKDVAVVFSDNNAEEMVIRIRVIKADDDK-------------DEDGNKI---I 1276
Query: 183 EDEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQDNKIVIDSVTGSFTKEN------ 344
ED D+ L+++E LL TL G+ GI++ F+ + K+ I++ GS
Sbjct: 1277 ED-----DVMLKRLEKHLLDGCTLRGVEGIERAFLNKGVKL-IEAKDGSMKHSKVDDECQ 1330
Query: 345 EWLLETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAY 524
EW L+T G + V+ E VD RT +ND+ + +V GIE RA L++E+ V++FDG+Y
Sbjct: 1331 EWYLDTQGTSLREVLTVEGVDTKRTTTNDLWQVVDVFGIEGARAALMHELTAVLAFDGSY 1390
Query: 525 VNYRHLSVL 551
VN+RHL++L
Sbjct: 1391 VNHRHLALL 1399
[248][TOP]
>UniRef100_C5FCL2 DNA-directed RNA polymerase n=1 Tax=Microsporum canis CBS 113480
RepID=C5FCL2_NANOT
Length = 1748
Score = 109 bits (273), Expect = 1e-22
Identities = 69/189 (36%), Positives = 106/189 (56%), Gaps = 6/189 (3%)
Frame = +3
Query: 6 RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
+I + D+ V+ S++NA E V+R+R + +QD E
Sbjct: 1236 KIKEAYPQDIAVIFSDNNADEQVVRIRQIQD----------------PKQD--------E 1271
Query: 186 DEEDAE-DLFLRKVESQLLSNLTLSGIPGIDKVFMRQDNKI-VIDS----VTGSFTKENE 347
D++D E D+ L+K+ES LL LTL G+PGI++ F+ + ++ V++ + S + E
Sbjct: 1272 DDDDTEYDVTLKKLESHLLDTLTLRGVPGIERAFINEKSRTRVLEDGSLHQSASDPECKE 1331
Query: 348 WLLETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYV 527
W+LET G V+ +D +RT SN VE EV GIEA R LL E+ V++FDG+YV
Sbjct: 1332 WVLETSGSALADVLAIPGIDASRTYSNQFVEILEVFGIEATRTALLRELTQVLAFDGSYV 1391
Query: 528 NYRHLSVLV 554
N+RHL++LV
Sbjct: 1392 NHRHLALLV 1400
[249][TOP]
>UniRef100_Q6JU59 RNA polymerase II largest subunit (Fragment) n=1 Tax=Semibalanus
balanoides RepID=Q6JU59_SEMBA
Length = 137
Score = 108 bits (269), Expect = 3e-22
Identities = 71/154 (46%), Positives = 91/154 (59%), Gaps = 4/154 (2%)
Frame = +3
Query: 69 LVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEMEDEEDAEDLFLRKVESQLLSNL 248
LV+R+R+ N D + SD EDEQ DR MED D+FLR +ES +LS++
Sbjct: 1 LVLRIRIM--NSDDSKFSD------EDEQ-MDR----MED-----DMFLRCIESNMLSDM 42
Query: 249 TLSGIPGIDKVFMR----QDNKIVIDSVTGSFTKENEWLLETDGVNFIAVMGHEDVDFTR 416
TL GI I KV+M ++ K ++ + TG F EWLLETDG + + V+ DVD R
Sbjct: 43 TLQGIESISKVYMHLPSTENKKRIVITETGEFKHIAEWLLETDGTSLMKVLSERDVDPIR 102
Query: 417 TVSNDIVETFEVLGIEAVRATLLNEIRTVISFDG 518
T SNDI E F VLGIEAVR + EI TV+ F G
Sbjct: 103 TFSNDICEIFSVLGIEAVRKCIEKEINTVLQFYG 136
[250][TOP]
>UniRef100_C4JY44 DNA-directed RNA polymerase n=1 Tax=Uncinocarpus reesii 1704
RepID=C4JY44_UNCRE
Length = 1747
Score = 108 bits (269), Expect = 3e-22
Identities = 70/189 (37%), Positives = 102/189 (53%), Gaps = 7/189 (3%)
Frame = +3
Query: 6 RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
+I + D+ V+ S++NA E VIR+R + +QD E
Sbjct: 1189 KIKESYPSDIAVIFSDNNADEQVIRIRQIQD----------------PKQD--------E 1224
Query: 186 DEEDAE-DLFLRKVESQLLSNLTLSGIPGIDKVFMRQDNKIVIDSVTGSFTKE------N 344
D++D E D+ L+K+ES LL LTL G+ G+++ F+ + ++ V GS K
Sbjct: 1225 DDDDTEYDVTLKKLESHLLDTLTLRGVAGVERAFINEKSR-VRQVEDGSLYKSAEDPQCK 1283
Query: 345 EWLLETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAY 524
EW+LET G V+ VD TRT SN +E EV GIEA R LL E+ V++FDG+Y
Sbjct: 1284 EWVLETSGSALGDVLALPGVDSTRTYSNQFIEILEVFGIEATRTALLRELTQVLAFDGSY 1343
Query: 525 VNYRHLSVL 551
VN+RHL++L
Sbjct: 1344 VNHRHLALL 1352