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[1][TOP]
>UniRef100_O04142 DNA-directed RNA polymerase (Fragment) n=1 Tax=Porphyra yezoensis
RepID=O04142_PORYE
Length = 1685
Score = 310 bits (795), Expect(2) = 6e-92
Identities = 161/161 (100%), Positives = 161/161 (100%)
Frame = +3
Query: 66 FKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDA 245
FKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDA
Sbjct: 882 FKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDA 941
Query: 246 EVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTR 425
EVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTR
Sbjct: 942 EVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTR 1001
Query: 426 KAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMT 548
KAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMT
Sbjct: 1002 KAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMT 1042
Score = 51.6 bits (122), Expect(2) = 6e-92
Identities = 23/25 (92%), Positives = 24/25 (96%)
Frame = +2
Query: 2 GAVSQGVGTAEEGPRLPTPRGFQDG 76
GAVSQGVGTAEEGPRLPTPRGF+ G
Sbjct: 861 GAVSQGVGTAEEGPRLPTPRGFKTG 885
[2][TOP]
>UniRef100_O09451 DNA-directed RNA polymerase (Fragment) n=1 Tax=Bonnemaisonia hamifera
RepID=O09451_9FLOR
Length = 1732
Score = 166 bits (420), Expect = 1e-39
Identities = 89/183 (48%), Positives = 120/183 (65%), Gaps = 3/183 (1%)
Frame = +3
Query: 9 LAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIV 188
L E+ Q++ DR LR + KTGE+K PLAVN++R+IWNAK+ ++ + SDL P +++
Sbjct: 846 LRLEFQQIEADRKLLRDYIIKTGESKRPLAVNVDRVIWNAKQEHNIHADSVSDLKPDQVL 905
Query: 189 RGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEA---LKELSETAQLNATLL 359
+GV +LL RTRVL ++A ++ A E + P DE + L + AQ NATLL
Sbjct: 906 KGVSMLLKRTRVLVLGDEAALENAALEPGMEEDDEGNPIDEKPTMVDPLMKEAQENATLL 965
Query: 360 FQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPAT 539
FQ+H+R+ LA K ++ HRLT KAF WLL E+ENRF GE +GA AAQSIGEPAT
Sbjct: 966 FQIHMRSMLACKKLIQLHRLTFKAFLWLLGEVENRFMMCRVAPGENIGAIAAQSIGEPAT 1025
Query: 540 QMT 548
QMT
Sbjct: 1026 QMT 1028
[3][TOP]
>UniRef100_Q9AXN0 DNA-directed RNA polymerase n=1 Tax=Glaucosphaera vacuolata
RepID=Q9AXN0_9RHOD
Length = 1746
Score = 164 bits (415), Expect = 4e-39
Identities = 93/193 (48%), Positives = 123/193 (63%), Gaps = 13/193 (6%)
Frame = +3
Query: 9 LAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIV 188
L E+AQ+K DRD L+ E+ ++ E+K PLAVNI+RLIWN K +F++RQ+ SDL+P I+
Sbjct: 922 LEDEFAQIKLDRDRLQREIIRSRESKWPLAVNIDRLIWNVKTLFNIRQDSVSDLNPRDIL 981
Query: 189 RGVELLLHRTRVLT-------------SDEDAEVDAIAREMLPPDGSASGPQDEALKELS 329
+GV++LL R V+ D+ AEVD + ++L+
Sbjct: 982 KGVQILLSRCNVVALPPKSIKLLDEGDGDQVAEVDT----------------NSVSRQLA 1025
Query: 330 ETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGAT 509
AQ NATLL+ +H+RA LASKV+L E+RL +KAF LL EIENRF A P GEM+GA
Sbjct: 1026 VEAQENATLLWSIHIRAFLASKVILKEYRLDKKAFMHLLGEIENRFLHAKCPPGEMIGAV 1085
Query: 510 AAQSIGEPATQMT 548
A QSIGEPATQMT
Sbjct: 1086 APQSIGEPATQMT 1098
[4][TOP]
>UniRef100_Q9AXN1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Botryocladia
uvarioides RepID=Q9AXN1_9FLOR
Length = 1712
Score = 161 bits (407), Expect = 3e-38
Identities = 86/181 (47%), Positives = 124/181 (68%)
Frame = +3
Query: 6 LLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKI 185
LL E+ ++++DRD LR+ + K+GEAK P+AVNI+R+IWNAK+ ++R + SDL+P ++
Sbjct: 846 LLRNEFQRIREDRDLLRNFIAKSGEAKRPMAVNIDRIIWNAKQAHNIRPDSVSDLTPVQV 905
Query: 186 VRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQ 365
+G+++LL RTRV+ +D + + + + +G + A ET Q NAT++FQ
Sbjct: 906 WKGIKMLLKRTRVVEIGDDQDDEDVDDGVTDENGEMIDRKPVADPLTLET-QENATMIFQ 964
Query: 366 VHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQM 545
+HVR+ LA K V+ HRL AF W+L EIENRF A+A GE +GA AAQSIGEPATQM
Sbjct: 965 IHVRSMLACKQVMVRHRLDINAFLWILGEIENRFLGAIAAPGENIGAIAAQSIGEPATQM 1024
Query: 546 T 548
T
Sbjct: 1025 T 1025
[5][TOP]
>UniRef100_UPI000179348F PREDICTED: similar to DNA-directed RNA polymerase II subunit RPB1
(RNA polymerase II subunit B1) (DNA-directed RNA
polymerase III largest subunit) n=1 Tax=Acyrthosiphon
pisum RepID=UPI000179348F
Length = 1862
Score = 146 bits (369), Expect = 8e-34
Identities = 85/180 (47%), Positives = 113/180 (62%)
Frame = +3
Query: 9 LAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIV 188
L KEW QL DRD LR E+F +GE+K+ L N++R+IWN ++IF + + +DL+P K+V
Sbjct: 945 LEKEWEQLTNDRDTLR-EIFPSGESKVVLPCNLKRMIWNVQKIFHINKRGPTDLNPIKVV 1003
Query: 189 RGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQV 368
GV+ LL + V+ + ED ELS+ A NATLLFQ
Sbjct: 1004 NGVKKLLDKC-VIVAGED--------------------------ELSKKANKNATLLFQC 1036
Query: 369 HVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMT 548
VR++L +K+V RL+ +AF WL+ EIENRF+QA A GEMVGA AAQS+GEPATQMT
Sbjct: 1037 LVRSTLCTKLVSENFRLSSEAFEWLVGEIENRFKQAQAQPGEMVGALAAQSLGEPATQMT 1096
[6][TOP]
>UniRef100_Q84KP6 DNA-directed RNA polymerase n=1 Tax=Cyanidioschyzon merolae
RepID=Q84KP6_CYAME
Length = 1819
Score = 145 bits (366), Expect = 2e-33
Identities = 89/180 (49%), Positives = 107/180 (59%)
Frame = +3
Query: 9 LAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIV 188
L +E+ QL DR+ L VF TGEAK PL VN++RLI N + IF ++ + SDL P +I+
Sbjct: 943 LEEEYQQLLADREQLC-AVFPTGEAKWPLMVNVQRLIQNCRSIFGIQHDTLSDLHPRQII 1001
Query: 189 RGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQV 368
+GV +LL R V+ D+ ELS AQ NA LLF
Sbjct: 1002 QGVRVLLQRCVVVPGDD---------------------------ELSREAQRNAVLLFAA 1034
Query: 369 HVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMT 548
HVRA LA+K VL HRL KAF WLL EIE RF +A A GEMVGA AAQS+GEPATQMT
Sbjct: 1035 HVRAELATKRVLQIHRLNSKAFAWLLGEIETRFVRARATPGEMVGAVAAQSLGEPATQMT 1094
[7][TOP]
>UniRef100_UPI000179338A PREDICTED: similar to DNA-directed RNA polymerase II subunit RPB1
(RNA polymerase II subunit B1) (DNA-directed RNA
polymerase III largest subunit) n=1 Tax=Acyrthosiphon
pisum RepID=UPI000179338A
Length = 1862
Score = 144 bits (362), Expect = 5e-33
Identities = 80/180 (44%), Positives = 112/180 (62%)
Frame = +3
Query: 9 LAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIV 188
L +EW QL DRD LR E+F +GE+K+ L N++R+IWN ++IF + + ++DL+P K++
Sbjct: 945 LEREWEQLTTDRDTLR-EIFPSGESKVVLPCNLKRMIWNVQKIFHINKRGQTDLNPVKVI 1003
Query: 189 RGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQV 368
GV+ LL + ++ + ELS+ A NATLLFQ
Sbjct: 1004 NGVKELLDKCVIVAGGD---------------------------ELSKKANHNATLLFQC 1036
Query: 369 HVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMT 548
VR++L +K+V RL+ +AF WL+ EIENRF+QA A GEMVGA AAQS+GEPATQMT
Sbjct: 1037 LVRSTLCTKLVSERFRLSSEAFEWLIGEIENRFKQAQAQPGEMVGALAAQSLGEPATQMT 1096
[8][TOP]
>UniRef100_UPI000051A77E PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
isoform 2 n=1 Tax=Apis mellifera RepID=UPI000051A77E
Length = 1422
Score = 144 bits (362), Expect = 5e-33
Identities = 81/180 (45%), Positives = 110/180 (61%)
Frame = +3
Query: 9 LAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIV 188
L +EW QL KDR LR E+F +GE+K+ L N++R+IWN ++IF + + +DLSP K++
Sbjct: 944 LEREWEQLNKDRAVLR-EIFPSGESKVVLPCNLQRMIWNVQKIFHINKRAPTDLSPMKVI 1002
Query: 189 RGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQV 368
+GV+ LL + ++ D+ LS+ A NATLLFQ
Sbjct: 1003 QGVKDLLDKCIIVAGDD---------------------------RLSKQANENATLLFQC 1035
Query: 369 HVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMT 548
VR++L +K V E RL+ +AF WL+ EIE RFQQA GEMVGA AAQS+GEPATQMT
Sbjct: 1036 LVRSTLCTKCVSEEFRLSSEAFEWLIGEIETRFQQAQVSPGEMVGALAAQSLGEPATQMT 1095
[9][TOP]
>UniRef100_Q30BD8 DNA-directed RNA polymerase (Fragment) n=1 Tax=Cyanophora paradoxa
RepID=Q30BD8_CYAPA
Length = 1000
Score = 143 bits (361), Expect = 7e-33
Identities = 85/179 (47%), Positives = 111/179 (62%)
Frame = +3
Query: 9 LAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIV 188
L KE+ QL KDR+ LR E+ ++GE + L VN++RLIWNA++I+ V + SDL P I+
Sbjct: 849 LDKEYEQLLKDREQLRSEIVQSGEGAVHLPVNLKRLIWNAQKIYKVDTSKPSDLRPDIIL 908
Query: 189 RGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQV 368
+GVELL + V+ ++ LS AQ NAT LF +
Sbjct: 909 QGVELLSTQLVVIAGEDT---------------------------LSREAQENATRLFNI 941
Query: 369 HVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQM 545
H+RA+LA+K VLSE+RL+ A WLL IE+RF QA+A GEMVGA AAQSIGEPATQM
Sbjct: 942 HLRATLATKRVLSEYRLSAAALEWLLGVIESRFNQAIAHPGEMVGAIAAQSIGEPATQM 1000
[10][TOP]
>UniRef100_A9UEE2 DNA-directed RNA polymerase (Fragment) n=1 Tax=Cephaloboides cf.
armata SB363 RepID=A9UEE2_9BILA
Length = 475
Score = 142 bits (358), Expect = 2e-32
Identities = 80/177 (45%), Positives = 110/177 (62%)
Frame = +3
Query: 18 EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 197
EWAQL++DR LR ++F TG+AK+ L N++RLIWNA++IF V +DL+P +++ G+
Sbjct: 154 EWAQLEEDRRLLR-KIFPTGDAKIVLPCNLQRLIWNAQKIFHVETRKPTDLNPLRVIEGI 212
Query: 198 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 377
L + V+ S ED +S+ AQ NATLL + +R
Sbjct: 213 RELSTKL-VIVSGED--------------------------RISQQAQYNATLLMNILIR 245
Query: 378 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMT 548
++L SK + S H+L +AF WLL EIE RF+QA+A GEMVGA AAQS+GEPATQMT
Sbjct: 246 STLCSKKMASTHKLNSEAFEWLLGEIETRFKQAIAQPGEMVGALAAQSLGEPATQMT 302
[11][TOP]
>UniRef100_A9QMT2 RNA polymerase 2 (Fragment) n=1 Tax=Pellioditis typica
RepID=A9QMT2_9PELO
Length = 488
Score = 142 bits (358), Expect = 2e-32
Identities = 77/178 (43%), Positives = 110/178 (61%)
Frame = +3
Query: 15 KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 194
KEWAQL++DR LR ++F TG AK+ L N++RLIWNA++IF V +DL+P +++ G
Sbjct: 145 KEWAQLEEDRRLLR-KIFPTGNAKIVLPCNLQRLIWNAQKIFHVETRKPTDLNPLRVIEG 203
Query: 195 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 374
V L + +++ D+ +S+ AQ NATLL + +
Sbjct: 204 VRELSEKLVIVSGDD---------------------------RISKQAQYNATLLMNILI 236
Query: 375 RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMT 548
R++L SK + S +RL +AF W+L E+E RF+QA+A GEMVGA AAQS+GEPATQMT
Sbjct: 237 RSTLCSKKMASTYRLNSEAFEWMLGEVETRFKQAIAQPGEMVGALAAQSLGEPATQMT 294
[12][TOP]
>UniRef100_A9QME0 DNA-directed RNA polymerase (Fragment) n=1 Tax=Pellioditis typica
RepID=A9QME0_9PELO
Length = 633
Score = 142 bits (358), Expect = 2e-32
Identities = 77/178 (43%), Positives = 110/178 (61%)
Frame = +3
Query: 15 KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 194
KEWAQL++DR LR ++F TG AK+ L N++RLIWNA++IF V +DL+P +++ G
Sbjct: 159 KEWAQLEEDRRLLR-KIFPTGNAKIVLPCNLQRLIWNAQKIFHVETRKPTDLNPLRVIEG 217
Query: 195 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 374
V L + +++ D+ +S+ AQ NATLL + +
Sbjct: 218 VRELSEKLVIVSGDD---------------------------RISKQAQYNATLLMNILI 250
Query: 375 RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMT 548
R++L SK + S +RL +AF W+L E+E RF+QA+A GEMVGA AAQS+GEPATQMT
Sbjct: 251 RSTLCSKKMASTYRLNSEAFEWMLGEVETRFKQAIAQPGEMVGALAAQSLGEPATQMT 308
[13][TOP]
>UniRef100_P35084 DNA-directed RNA polymerase II subunit rpb1 n=1 Tax=Dictyostelium
discoideum RepID=RPB1_DICDI
Length = 1727
Score = 141 bits (355), Expect = 4e-32
Identities = 80/182 (43%), Positives = 111/182 (60%)
Frame = +3
Query: 3 ELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSK 182
+ L KE+ ++K DR LR+E+ +GEA PL VN+ RLI NA+++F++ SDL+P+
Sbjct: 936 DTLEKEFERIKSDRSLLRNEIIPSGEANWPLPVNLRRLINNAQKLFNIDIRRVSDLNPAV 995
Query: 183 IVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLF 362
+V +E L+ R +++ + + E DE NAT+LF
Sbjct: 996 VVLEIEKLVARLKIIATADTTE------------------DDENFNRAWAEVYFNATMLF 1037
Query: 363 QVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQ 542
+ VR++ ASK VL+E RLT KAF W+ EIE++F QALA GEMVGA AAQSIGEPATQ
Sbjct: 1038 SILVRSTFASKRVLTEFRLTEKAFLWVCGEIESKFLQALAHPGEMVGALAAQSIGEPATQ 1097
Query: 543 MT 548
MT
Sbjct: 1098 MT 1099
[14][TOP]
>UniRef100_UPI0000D5670C PREDICTED: similar to GA13798-PA n=1 Tax=Tribolium castaneum
RepID=UPI0000D5670C
Length = 2007
Score = 140 bits (354), Expect = 5e-32
Identities = 81/180 (45%), Positives = 112/180 (62%)
Frame = +3
Query: 9 LAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIV 188
L EW QL+KDR+ LR ++F +GE+K+ L N++R+IWN ++IF + + +DLSP +++
Sbjct: 948 LETEWEQLQKDREALR-QIFPSGESKVVLPCNLQRMIWNVQKIFHINKRAPTDLSPLRVI 1006
Query: 189 RGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQV 368
+GV LL++ V+ + ED LS+ A NATLLFQ
Sbjct: 1007 QGVRELLNKC-VIVAGED--------------------------RLSKQANENATLLFQC 1039
Query: 369 HVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMT 548
VR++L +K V E RL+ +AF WL+ EIE RFQQA GEMVGA AAQS+GEPATQMT
Sbjct: 1040 LVRSTLCTKCVSEEFRLSTEAFEWLIGEIETRFQQAQVNPGEMVGALAAQSLGEPATQMT 1099
[15][TOP]
>UniRef100_Q30BD9 DNA-directed RNA polymerase n=1 Tax=Glaucocystis nostochinearum
RepID=Q30BD9_9EUKA
Length = 1852
Score = 140 bits (353), Expect = 6e-32
Identities = 86/181 (47%), Positives = 107/181 (59%)
Frame = +3
Query: 6 LLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKI 185
LL E+ QL DR LR + T E PL VN++RLIWNA++IF + SDL P I
Sbjct: 938 LLEAEFKQLMNDRTALRESI-PTDENTWPLPVNLKRLIWNAQKIFHIDVRKPSDLDPVDI 996
Query: 186 VRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQ 365
++GV LL + V+ ++ V+A Q NAT+LFQ
Sbjct: 997 IKGVNLLTKQLVVIPGEDPLSVEA---------------------------QANATMLFQ 1029
Query: 366 VHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQM 545
+ VR+ LASK VL+E+RLT AF WLL EIE+RF QA+A GEMVGA AAQSIGEPATQM
Sbjct: 1030 ILVRSCLASKRVLTEYRLTSHAFEWLLGEIESRFLQAIANPGEMVGAIAAQSIGEPATQM 1089
Query: 546 T 548
T
Sbjct: 1090 T 1090
[16][TOP]
>UniRef100_Q1WKU2 Putative RNA polymerase II 215 kD subunit (Fragment) n=1
Tax=Drosophila simulans RepID=Q1WKU2_DROSI
Length = 746
Score = 139 bits (351), Expect = 1e-31
Identities = 78/180 (43%), Positives = 110/180 (61%)
Frame = +3
Query: 9 LAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIV 188
L EW +L DRD LR ++F GE+K+ L N++R+IWN ++IF + + +DLSP +++
Sbjct: 86 LEAEWDRLVSDRDSLR-QIFPNGESKVVLPCNLQRMIWNVQKIFHINKRLPTDLSPIRVI 144
Query: 189 RGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQV 368
+GV+ LL R ++T ++ +S+ A NATLLFQ
Sbjct: 145 KGVKTLLERCVIVTGND---------------------------RISKQANENATLLFQC 177
Query: 369 HVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMT 548
+R++L +K V E RL+ +AF WL+ EIE RFQQA A GEMVGA AAQS+GEPATQMT
Sbjct: 178 LIRSTLCTKYVSEEFRLSTEAFEWLVGEIETRFQQAQANPGEMVGALAAQSLGEPATQMT 237
[17][TOP]
>UniRef100_B4YT42 DNA-directed RNA polymerase (Fragment) n=1 Tax=Amphizoa lecontei
RepID=B4YT42_AMPLE
Length = 562
Score = 139 bits (351), Expect = 1e-31
Identities = 78/177 (44%), Positives = 106/177 (59%)
Frame = +3
Query: 9 LAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIV 188
L +EW QL KDR+ LR ++F TGE+K+ L N++R+IWN ++IF + + +DLSP +++
Sbjct: 414 LEREWDQLSKDREALR-QIFPTGESKVVLPCNLQRMIWNVQKIFHINKRATTDLSPLRVI 472
Query: 189 RGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQV 368
+GV LL + ++ D+ LS A NATLLFQ
Sbjct: 473 QGVRQLLQKCIIVAGDD---------------------------RLSRQANENATLLFQC 505
Query: 369 HVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPAT 539
VRA+L +K V E RL+ +AF WL+ EIE RFQQA GEMVGA AAQS+GEPAT
Sbjct: 506 LVRATLCTKCVSEEFRLSTEAFEWLIGEIETRFQQAQCAPGEMVGALAAQSLGEPAT 562
[18][TOP]
>UniRef100_B4IK28 DNA-directed RNA polymerase n=1 Tax=Drosophila sechellia
RepID=B4IK28_DROSE
Length = 1887
Score = 139 bits (351), Expect = 1e-31
Identities = 78/180 (43%), Positives = 110/180 (61%)
Frame = +3
Query: 9 LAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIV 188
L EW +L DRD LR ++F GE+K+ L N++R+IWN ++IF + + +DLSP +++
Sbjct: 944 LEAEWDRLVSDRDSLR-QIFPNGESKVVLPCNLQRMIWNVQKIFHINKRLPTDLSPIRVI 1002
Query: 189 RGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQV 368
+GV+ LL R ++T ++ +S+ A NATLLFQ
Sbjct: 1003 KGVKTLLERCVIVTGND---------------------------RISKQANENATLLFQC 1035
Query: 369 HVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMT 548
+R++L +K V E RL+ +AF WL+ EIE RFQQA A GEMVGA AAQS+GEPATQMT
Sbjct: 1036 LIRSTLCTKYVSEEFRLSTEAFEWLVGEIETRFQQAQANPGEMVGALAAQSLGEPATQMT 1095
[19][TOP]
>UniRef100_A9YGC1 RNA polymerase II 215 kD subunit (Fragment) n=2 Tax=melanogaster
subgroup RepID=A9YGC1_DROME
Length = 247
Score = 139 bits (351), Expect = 1e-31
Identities = 78/180 (43%), Positives = 110/180 (61%)
Frame = +3
Query: 9 LAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIV 188
L EW +L DRD LR ++F GE+K+ L N++R+IWN ++IF + + +DLSP +++
Sbjct: 1 LEAEWDRLVSDRDSLR-QIFPNGESKVVLPCNLQRMIWNVQKIFHINKRLPTDLSPIRVI 59
Query: 189 RGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQV 368
+GV+ LL R ++T ++ +S+ A NATLLFQ
Sbjct: 60 KGVKTLLERCVIVTGND---------------------------RISKQANENATLLFQC 92
Query: 369 HVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMT 548
+R++L +K V E RL+ +AF WL+ EIE RFQQA A GEMVGA AAQS+GEPATQMT
Sbjct: 93 LIRSTLCTKYVSEEFRLSTEAFEWLVGEIETRFQQAQANPGEMVGALAAQSLGEPATQMT 152
[20][TOP]
>UniRef100_A9UNH9 DNA-directed RNA polymerase n=1 Tax=Drosophila melanogaster
RepID=A9UNH9_DROME
Length = 1887
Score = 139 bits (351), Expect = 1e-31
Identities = 78/180 (43%), Positives = 110/180 (61%)
Frame = +3
Query: 9 LAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIV 188
L EW +L DRD LR ++F GE+K+ L N++R+IWN ++IF + + +DLSP +++
Sbjct: 944 LEAEWDRLVSDRDSLR-QIFPNGESKVVLPCNLQRMIWNVQKIFHINKRLPTDLSPIRVI 1002
Query: 189 RGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQV 368
+GV+ LL R ++T ++ +S+ A NATLLFQ
Sbjct: 1003 KGVKTLLERCVIVTGND---------------------------RISKQANENATLLFQC 1035
Query: 369 HVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMT 548
+R++L +K V E RL+ +AF WL+ EIE RFQQA A GEMVGA AAQS+GEPATQMT
Sbjct: 1036 LIRSTLCTKYVSEEFRLSTEAFEWLVGEIETRFQQAQANPGEMVGALAAQSLGEPATQMT 1095
[21][TOP]
>UniRef100_A9QMF6 RNA polymerase 2 (Fragment) n=1 Tax=Pristionchus pacificus
RepID=A9QMF6_PRIPA
Length = 583
Score = 139 bits (351), Expect = 1e-31
Identities = 79/177 (44%), Positives = 107/177 (60%)
Frame = +3
Query: 18 EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 197
EW QL++DR+ LR +F G+AK+ L N++RLIWNA++IF V +DLSP +++ GV
Sbjct: 127 EWQQLQEDRELLRM-IFPKGDAKIVLPCNLQRLIWNAQKIFHVEMRKPTDLSPVRVIEGV 185
Query: 198 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 377
+ + ++ ED +S+ AQ NATLL + VR
Sbjct: 186 REVSKKL-IIVGGED--------------------------RISKQAQYNATLLMNILVR 218
Query: 378 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMT 548
++L SK + +HRL +AF WLL EIE RFQQA+A GEMVGA AAQS+GEPATQMT
Sbjct: 219 STLCSKQLAEKHRLNSEAFEWLLGEIETRFQQAIAQPGEMVGALAAQSLGEPATQMT 275
[22][TOP]
>UniRef100_P04052 DNA-directed RNA polymerase II subunit RPB1 n=2 Tax=Drosophila
melanogaster RepID=RPB1_DROME
Length = 1887
Score = 139 bits (351), Expect = 1e-31
Identities = 78/180 (43%), Positives = 110/180 (61%)
Frame = +3
Query: 9 LAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIV 188
L EW +L DRD LR ++F GE+K+ L N++R+IWN ++IF + + +DLSP +++
Sbjct: 944 LEAEWDRLVSDRDSLR-QIFPNGESKVVLPCNLQRMIWNVQKIFHINKRLPTDLSPIRVI 1002
Query: 189 RGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQV 368
+GV+ LL R ++T ++ +S+ A NATLLFQ
Sbjct: 1003 KGVKTLLERCVIVTGND---------------------------RISKQANENATLLFQC 1035
Query: 369 HVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMT 548
+R++L +K V E RL+ +AF WL+ EIE RFQQA A GEMVGA AAQS+GEPATQMT
Sbjct: 1036 LIRSTLCTKYVSEEFRLSTEAFEWLVGEIETRFQQAQANPGEMVGALAAQSLGEPATQMT 1095
[23][TOP]
>UniRef100_UPI00019270E9 PREDICTED: similar to DNA-directed RNA polymerase II subunit RPB1
isoform 2 n=1 Tax=Hydra magnipapillata
RepID=UPI00019270E9
Length = 2014
Score = 139 bits (350), Expect = 1e-31
Identities = 78/180 (43%), Positives = 111/180 (61%)
Frame = +3
Query: 9 LAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIV 188
+ +E+ QLK DR+ LR+ +F G K+ L V + RLIWN++++F V ++DLSP K++
Sbjct: 952 IEEEFRQLKDDREMLRN-IFPNGNKKVNLPVKLSRLIWNSQKMFKVNLRAQTDLSPLKVI 1010
Query: 189 RGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQV 368
++ L R V+ ++ +LS+ AQLNAT+LFQ+
Sbjct: 1011 NDIKDLTKRLLVVKGED---------------------------KLSKEAQLNATMLFQI 1043
Query: 369 HVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMT 548
H+R++L SK V+ E RLT +AF WLL E+E+RF A A GEMVGA AAQS+GEPATQMT
Sbjct: 1044 HLRSTLCSKRVIEEFRLTSEAFDWLLGEVESRFNLAQAQPGEMVGALAAQSLGEPATQMT 1103
[24][TOP]
>UniRef100_UPI00019270BB PREDICTED: similar to DNA-directed RNA polymerase II subunit RPB1
isoform 1 n=1 Tax=Hydra magnipapillata
RepID=UPI00019270BB
Length = 2041
Score = 139 bits (350), Expect = 1e-31
Identities = 78/180 (43%), Positives = 111/180 (61%)
Frame = +3
Query: 9 LAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIV 188
+ +E+ QLK DR+ LR+ +F G K+ L V + RLIWN++++F V ++DLSP K++
Sbjct: 953 IEEEFRQLKDDREMLRN-IFPNGNKKVNLPVKLSRLIWNSQKMFKVNLRAQTDLSPLKVI 1011
Query: 189 RGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQV 368
++ L R V+ ++ +LS+ AQLNAT+LFQ+
Sbjct: 1012 NDIKDLTKRLLVVKGED---------------------------KLSKEAQLNATMLFQI 1044
Query: 369 HVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMT 548
H+R++L SK V+ E RLT +AF WLL E+E+RF A A GEMVGA AAQS+GEPATQMT
Sbjct: 1045 HLRSTLCSKRVIEEFRLTSEAFDWLLGEVESRFNLAQAQPGEMVGALAAQSLGEPATQMT 1104
[25][TOP]
>UniRef100_UPI000186D846 predicted protein n=1 Tax=Pediculus humanus corporis
RepID=UPI000186D846
Length = 1885
Score = 139 bits (350), Expect = 1e-31
Identities = 81/180 (45%), Positives = 110/180 (61%)
Frame = +3
Query: 9 LAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIV 188
L KEW QL+KDR+ LR ++F +GE K+ L N++R+IWN ++IF + + +DLSP +++
Sbjct: 937 LEKEWDQLQKDREALR-QIFPSGENKVVLPCNLQRMIWNVQKIFHINKRAPTDLSPLRVI 995
Query: 189 RGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQV 368
GV LL + V+ + ED LS+ A NATLLFQ
Sbjct: 996 EGVRDLLQKC-VIVAGED--------------------------HLSKQANENATLLFQC 1028
Query: 369 HVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMT 548
VR++L +K V + RL+ +AF WL+ EIE RFQQA GEMVGA AAQS+GEPATQMT
Sbjct: 1029 LVRSTLCTKCVSEDMRLSTEAFEWLIGEIETRFQQAQCAPGEMVGALAAQSLGEPATQMT 1088
[26][TOP]
>UniRef100_Q9XZU8 DNA-directed RNA polymerase (Fragment) n=1 Tax=Drosophila
pseudoobscura pseudoobscura RepID=Q9XZU8_DROPS
Length = 1811
Score = 139 bits (350), Expect = 1e-31
Identities = 77/180 (42%), Positives = 109/180 (60%)
Frame = +3
Query: 9 LAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIV 188
L EW L +DRD LR ++F G++K+ L N++R+IWN ++IF + + +DLSP +++
Sbjct: 866 LESEWDHLMQDRDHLR-QIFPNGDSKVVLPCNLQRMIWNVQKIFHINKRLPTDLSPMRVI 924
Query: 189 RGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQV 368
+GV+ LL R ++T + +S+ A NATLLFQ
Sbjct: 925 KGVKTLLERCVIVTGAD---------------------------RISKQANENATLLFQC 957
Query: 369 HVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMT 548
+R++L +K V E RL+ +AF WL+ EIE RFQQA A GEMVGA AAQS+GEPATQMT
Sbjct: 958 LIRSTLCTKYVSEEFRLSTEAFEWLIGEIETRFQQAQANPGEMVGALAAQSLGEPATQMT 1017
[27][TOP]
>UniRef100_Q6GYH6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Prodontorhabditis
wirthi RepID=Q6GYH6_9BILA
Length = 630
Score = 139 bits (350), Expect = 1e-31
Identities = 77/177 (43%), Positives = 108/177 (61%)
Frame = +3
Query: 18 EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 197
EWAQL++DR LR ++F TG AK+ L N++RLIWNA++IF V + L+P K+++GV
Sbjct: 166 EWAQLEEDRQLLR-KIFPTGNAKIVLPCNLQRLIWNAQKIFHVEMRKPTTLNPMKVIQGV 224
Query: 198 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 377
L + ++ ++ +S+ AQ NATLL + +R
Sbjct: 225 RELSKKLIIVNGED---------------------------RISKQAQYNATLLTNILIR 257
Query: 378 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMT 548
++L SK + S ++L +AF WLL EIENRFQ A+A GEMVGA AAQS+GEPATQMT
Sbjct: 258 STLCSKKMASTYKLDSEAFDWLLGEIENRFQSAIAQPGEMVGALAAQSLGEPATQMT 314
[28][TOP]
>UniRef100_Q29IN2 DNA-directed RNA polymerase n=1 Tax=Drosophila pseudoobscura
pseudoobscura RepID=Q29IN2_DROPS
Length = 1889
Score = 139 bits (350), Expect = 1e-31
Identities = 77/180 (42%), Positives = 109/180 (60%)
Frame = +3
Query: 9 LAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIV 188
L EW L +DRD LR ++F G++K+ L N++R+IWN ++IF + + +DLSP +++
Sbjct: 944 LESEWDHLMQDRDHLR-QIFPNGDSKVVLPCNLQRMIWNVQKIFHINKRLPTDLSPMRVI 1002
Query: 189 RGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQV 368
+GV+ LL R ++T + +S+ A NATLLFQ
Sbjct: 1003 KGVKTLLERCVIVTGAD---------------------------RISKQANENATLLFQC 1035
Query: 369 HVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMT 548
+R++L +K V E RL+ +AF WL+ EIE RFQQA A GEMVGA AAQS+GEPATQMT
Sbjct: 1036 LIRSTLCTKYVSEEFRLSTEAFEWLIGEIETRFQQAQANPGEMVGALAAQSLGEPATQMT 1095
[29][TOP]
>UniRef100_Q23699 DNA-directed RNA polymerase (Fragment) n=1 Tax=Crassostrea gigas
RepID=Q23699_CRAGI
Length = 1340
Score = 139 bits (350), Expect = 1e-31
Identities = 80/180 (44%), Positives = 109/180 (60%)
Frame = +3
Query: 9 LAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIV 188
L +EW QL++DRD LR +F TG++K+ L N++R+IWNA++IF + + +DL P K+V
Sbjct: 863 LDREWEQLREDRDILR-SIFPTGDSKVVLPCNLQRMIWNAQKIFRIDTHKPTDLHPIKVV 921
Query: 189 RGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQV 368
GVE L R V+ + LS A NATLLF+
Sbjct: 922 EGVEDLCKRLIVVAGGD---------------------------RLSIQANANATLLFKC 954
Query: 369 HVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMT 548
+R++L +K V E RL+ +AF WL+ E+E+RFQQA A GEMVGA AAQS+GEPATQMT
Sbjct: 955 LIRSTLCAKRVTEEFRLSSEAFEWLIGEVESRFQQAQAHPGEMVGALAAQSLGEPATQMT 1014
[30][TOP]
>UniRef100_B4H2R8 DNA-directed RNA polymerase n=1 Tax=Drosophila persimilis
RepID=B4H2R8_DROPE
Length = 1804
Score = 139 bits (350), Expect = 1e-31
Identities = 77/180 (42%), Positives = 109/180 (60%)
Frame = +3
Query: 9 LAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIV 188
L EW L +DRD LR ++F G++K+ L N++R+IWN ++IF + + +DLSP +++
Sbjct: 944 LESEWDHLMQDRDHLR-QIFPNGDSKVVLPCNLQRMIWNVQKIFHINKRLPTDLSPMRVI 1002
Query: 189 RGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQV 368
+GV+ LL R ++T + +S+ A NATLLFQ
Sbjct: 1003 KGVKTLLERCVIVTGAD---------------------------RISKQANENATLLFQC 1035
Query: 369 HVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMT 548
+R++L +K V E RL+ +AF WL+ EIE RFQQA A GEMVGA AAQS+GEPATQMT
Sbjct: 1036 LIRSTLCTKYVSEEFRLSTEAFEWLIGEIETRFQQAQANPGEMVGALAAQSLGEPATQMT 1095
[31][TOP]
>UniRef100_A9QMG9 DNA-directed RNA polymerase (Fragment) n=1 Tax=Poikilolaimus
regenfussi RepID=A9QMG9_9BILA
Length = 620
Score = 139 bits (349), Expect = 2e-31
Identities = 75/177 (42%), Positives = 109/177 (61%)
Frame = +3
Query: 18 EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 197
EWAQL++DR LR ++F G+AK+ L N++RLIWNA+++F V +++L+P +++ GV
Sbjct: 156 EWAQLEEDRRLLR-KIFPKGDAKVVLPCNLQRLIWNAQKVFHVETRKQTELNPLRVIEGV 214
Query: 198 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 377
L + ++ D+ +S+ AQ NATLL + +R
Sbjct: 215 RELSKKLVIVGGDD---------------------------RISKQAQFNATLLMNILLR 247
Query: 378 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMT 548
++L SK V +HRL ++AF WL+ EIE RF QA+A GEMVGA AAQS+GEPATQMT
Sbjct: 248 STLCSKQVAEKHRLNQEAFEWLIGEIETRFXQAIAQPGEMVGALAAQSLGEPATQMT 304
[32][TOP]
>UniRef100_A9QMQ7 DNA-directed RNA polymerase (Fragment) n=1 Tax=Phasmarhabditis sp.
EM434 RepID=A9QMQ7_9BILA
Length = 398
Score = 138 bits (348), Expect = 2e-31
Identities = 77/177 (43%), Positives = 109/177 (61%)
Frame = +3
Query: 18 EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 197
EW QL++DR LR ++F +G+AK+ L N++RLIWNA++IF V +DL+P +++ GV
Sbjct: 164 EWNQLEEDRRLLR-KIFPSGDAKIVLPCNLQRLIWNAQKIFHVETRKPTDLNPLRVIEGV 222
Query: 198 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 377
L + ++ S ED +S+ AQ NATLL + +R
Sbjct: 223 RELSKKL-IIVSGED--------------------------RISKQAQYNATLLMNILIR 255
Query: 378 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMT 548
++L SK + + HRL +AF WLL E+E RF+QA+A GEMVGA AAQS+GEPATQMT
Sbjct: 256 STLCSKKMATSHRLNSEAFEWLLGEVETRFKQAIAQPGEMVGALAAQSLGEPATQMT 312
[33][TOP]
>UniRef100_A9QMG4 RNA polymerase 2 (Fragment) n=1 Tax=Pelodera strongyloides
dermatitica RepID=A9QMG4_9PELO
Length = 478
Score = 138 bits (348), Expect = 2e-31
Identities = 77/177 (43%), Positives = 106/177 (59%)
Frame = +3
Query: 18 EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 197
EW QL++DR LR ++F G+ K+ L N++RLIWNA++IF V S L+P K+V GV
Sbjct: 146 EWQQLEEDRRLLR-KIFPKGDHKVVLPCNLQRLIWNAQKIFKVETRKPSSLNPLKVVSGV 204
Query: 198 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 377
+ L H+ ++ D+ +S+ AQ NATLL + +R
Sbjct: 205 KELSHKLVIVCGDD---------------------------RISKQAQYNATLLMNILIR 237
Query: 378 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMT 548
++L SK + +HRL + F WLL EIE+RF QA+A GEMVGA AAQS+GEPATQMT
Sbjct: 238 STLCSKQMAEKHRLNEEGFEWLLGEIEHRFNQAIAQPGEMVGALAAQSLGEPATQMT 294
[34][TOP]
>UniRef100_A9QMF0 DNA-directed RNA polymerase (Fragment) n=1 Tax=Pelodera
strongyloides dermatitica RepID=A9QMF0_9PELO
Length = 633
Score = 138 bits (348), Expect = 2e-31
Identities = 77/177 (43%), Positives = 106/177 (59%)
Frame = +3
Query: 18 EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 197
EW QL++DR LR ++F G+ K+ L N++RLIWNA++IF V S L+P K+V GV
Sbjct: 165 EWQQLEEDRRLLR-KIFPKGDHKVVLPCNLQRLIWNAQKIFKVETRKPSSLNPLKVVSGV 223
Query: 198 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 377
+ L H+ ++ D+ +S+ AQ NATLL + +R
Sbjct: 224 KELSHKLVIVCGDD---------------------------RISKQAQYNATLLMNILIR 256
Query: 378 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMT 548
++L SK + +HRL + F WLL EIE+RF QA+A GEMVGA AAQS+GEPATQMT
Sbjct: 257 STLCSKQMAEKHRLNEEGFEWLLGEIEHRFNQAIAQPGEMVGALAAQSLGEPATQMT 313
[35][TOP]
>UniRef100_Q2N162 DNA-directed RNA polymerase II largest subunit (Fragment) n=1
Tax=Suberites fuscus RepID=Q2N162_9METZ
Length = 260
Score = 138 bits (347), Expect = 3e-31
Identities = 81/180 (45%), Positives = 108/180 (60%)
Frame = +3
Query: 9 LAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIV 188
L EW QL +DR+ +R VF TG +K+ L VN+ RLIWNA++IF V ++DL P K+V
Sbjct: 100 LESEWQQLCQDREIVR-SVFPTGNSKIVLPVNLNRLIWNAQKIFHVDIRGQTDLHPLKVV 158
Query: 189 RGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQV 368
GV L ++ ++ ++ ELS+ AQ NATLLF+
Sbjct: 159 EGVRDLSNKLIIVQGED---------------------------ELSKQAQTNATLLFKS 191
Query: 369 HVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMT 548
+R+ L +K + EH+L +AF W+L EIE RFQQA A GEMVGA AAQS+GEPATQMT
Sbjct: 192 LLRSVLCTKKMSEEHKLNLEAFEWVLGEIETRFQQAQAQPGEMVGALAAQSLGEPATQMT 251
[36][TOP]
>UniRef100_B4YT40 DNA-directed RNA polymerase (Fragment) n=1 Tax=Dineutes sublineatus
RepID=B4YT40_9COLE
Length = 562
Score = 138 bits (347), Expect = 3e-31
Identities = 77/177 (43%), Positives = 108/177 (61%)
Frame = +3
Query: 9 LAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIV 188
L +EW QL KDR+ LR ++F +GE+K+ L N++R+IWN ++IF + + ++DLSP +++
Sbjct: 414 LEREWEQLVKDRETLR-QIFPSGESKVVLPCNLQRMIWNVQKIFHINKRAQTDLSPLRVI 472
Query: 189 RGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQV 368
+GV LL + ++ D+ LS+ A NATLLFQ
Sbjct: 473 QGVRDLLQKCVIVAGDD---------------------------RLSKQANENATLLFQC 505
Query: 369 HVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPAT 539
VRA+L +K V E RL+ +AF WL+ EIE RFQQA GEMVGA AAQS+GEPAT
Sbjct: 506 LVRATLCTKCVSEEFRLSTEAFEWLIGEIETRFQQAQCAPGEMVGALAAQSLGEPAT 562
[37][TOP]
>UniRef100_B4YT36 DNA-directed RNA polymerase (Fragment) n=1 Tax=Chauliognathus
opacus RepID=B4YT36_9COLE
Length = 629
Score = 138 bits (347), Expect = 3e-31
Identities = 77/177 (43%), Positives = 109/177 (61%)
Frame = +3
Query: 9 LAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIV 188
L +EW QL+KDR+ LR ++F +GE+K+ L N++R+IWN ++IF + + +DLSP +++
Sbjct: 481 LEREWEQLQKDREALR-QIFPSGESKVVLPCNLQRMIWNVQKIFHINKRAPTDLSPLRVI 539
Query: 189 RGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQV 368
+GV LL + ++ D+ LS+ A NATLLFQ
Sbjct: 540 QGVRELLKKCIIVAGDD---------------------------RLSKQANENATLLFQC 572
Query: 369 HVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPAT 539
VR++L +K V E RL+ +AF WL+ EIE RFQQA A GEMVGA AAQS+GEPAT
Sbjct: 573 LVRSTLCTKCVSEEFRLSTEAFEWLIGEIETRFQQAQANPGEMVGALAAQSLGEPAT 629
[38][TOP]
>UniRef100_B4MAN9 DNA-directed RNA polymerase n=1 Tax=Drosophila virilis
RepID=B4MAN9_DROVI
Length = 1889
Score = 138 bits (347), Expect = 3e-31
Identities = 78/180 (43%), Positives = 109/180 (60%)
Frame = +3
Query: 9 LAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIV 188
L EW +L DRD LR +F G++K+ L N++R+IWN ++IF + + +DLSP +++
Sbjct: 944 LESEWDRLVSDRDNLR-TIFPNGDSKVVLPCNLQRMIWNVQKIFHINKRLPTDLSPMRVI 1002
Query: 189 RGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQV 368
RGV+ LL R ++T ++ +S+ A NATLLFQ
Sbjct: 1003 RGVKGLLERCVIVTGND---------------------------RISKQANENATLLFQC 1035
Query: 369 HVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMT 548
+R++L +K V E RL+ +AF WL+ EIE RFQQA A GEMVGA AAQS+GEPATQMT
Sbjct: 1036 LIRSTLCTKYVSEEFRLSTEAFEWLIGEIETRFQQAQANPGEMVGALAAQSLGEPATQMT 1095
[39][TOP]
>UniRef100_B4L732 DNA-directed RNA polymerase n=1 Tax=Drosophila mojavensis
RepID=B4L732_DROMO
Length = 1889
Score = 138 bits (347), Expect = 3e-31
Identities = 78/180 (43%), Positives = 109/180 (60%)
Frame = +3
Query: 9 LAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIV 188
L EW +L DRD LR +F G++K+ L N++R+IWN ++IF + + +DLSP +++
Sbjct: 944 LESEWDRLVSDRDNLR-TIFPNGDSKVVLPCNLQRMIWNVQKIFHINKRLPTDLSPMRVI 1002
Query: 189 RGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQV 368
RGV+ LL R ++T ++ +S+ A NATLLFQ
Sbjct: 1003 RGVKGLLERCVIVTGND---------------------------RISKQANENATLLFQC 1035
Query: 369 HVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMT 548
+R++L +K V E RL+ +AF WL+ EIE RFQQA A GEMVGA AAQS+GEPATQMT
Sbjct: 1036 LIRSTLCTKYVSEEFRLSTEAFEWLIGEIETRFQQAQANPGEMVGALAAQSLGEPATQMT 1095
[40][TOP]
>UniRef100_B4JXA6 DNA-directed RNA polymerase n=1 Tax=Drosophila grimshawi
RepID=B4JXA6_DROGR
Length = 1889
Score = 138 bits (347), Expect = 3e-31
Identities = 78/180 (43%), Positives = 109/180 (60%)
Frame = +3
Query: 9 LAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIV 188
L EW L DRD LR +F+ G++K+ L N++R+IWN ++IF + + +DLSP +++
Sbjct: 944 LEAEWDHLVTDRDNLR-TIFRNGDSKVVLPCNLQRMIWNVQKIFHINKRLPTDLSPMRVI 1002
Query: 189 RGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQV 368
RGV LL+R ++T ++ +S+ A NATLLFQ
Sbjct: 1003 RGVSDLLNRCVIVTGND---------------------------RISKQANENATLLFQC 1035
Query: 369 HVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMT 548
+R++L +K V E RL+ +AF WL+ EIE RFQQA A GEMVGA AAQS+GEPATQMT
Sbjct: 1036 LIRSTLCTKYVSEEFRLSTEAFEWLIGEIETRFQQAQANPGEMVGALAAQSLGEPATQMT 1095
[41][TOP]
>UniRef100_Q4P7Q0 DNA-directed RNA polymerase n=1 Tax=Ustilago maydis
RepID=Q4P7Q0_USTMA
Length = 1774
Score = 138 bits (347), Expect = 3e-31
Identities = 75/182 (41%), Positives = 117/182 (64%)
Frame = +3
Query: 3 ELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSK 182
+LL +E+AQL+ DR+ LRHE+F++ + ++ L +N+ RL+ NA++IF V +DLSP++
Sbjct: 938 DLLDEEFAQLEFDRNLLRHEIFQSDQVQVRLPMNVARLVLNAQQIFHVDPRKPTDLSPAE 997
Query: 183 IVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLF 362
++ G+ +L R V+ D D I+RE AQ+NATLLF
Sbjct: 998 VIIGLRNVLDRLIVIRGD-----DPISRE----------------------AQMNATLLF 1030
Query: 363 QVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQ 542
++H+R+ L SK+V+ +H + ++A+ W+L EIE +F +++A GEM G AAQSIGEPATQ
Sbjct: 1031 KIHLRSYLCSKMVIEQHHINKEAWEWILGEIEGQFARSVANPGEMCGTLAAQSIGEPATQ 1090
Query: 543 MT 548
MT
Sbjct: 1091 MT 1092
[42][TOP]
>UniRef100_O01364 DNA-directed RNA polymerase (Fragment) n=1 Tax=Cruznema tripartitum
RepID=O01364_9BILA
Length = 633
Score = 137 bits (346), Expect = 4e-31
Identities = 77/177 (43%), Positives = 109/177 (61%)
Frame = +3
Query: 18 EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 197
EWAQL++DR LR ++F TG+AK+ L N++RL+WNA++IF V +DL+P +++ GV
Sbjct: 160 EWAQLEEDRRLLR-KIFPTGDAKIVLPCNLKRLLWNAQKIFHVEMRKPTDLNPLRVIEGV 218
Query: 198 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 377
L + V+ ED +S+ AQ NATLL + +R
Sbjct: 219 RELSKKL-VIVGGED--------------------------RISKQAQYNATLLMNILLR 251
Query: 378 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMT 548
++L SK + S ++L ++AF WLL E+E RFQQ +A GEMVGA AAQS+GEPATQMT
Sbjct: 252 STLCSKQMASHYKLNQEAFDWLLGEVETRFQQPIAQPGEMVGALAAQSLGEPATQMT 308
[43][TOP]
>UniRef100_B4NDK9 DNA-directed RNA polymerase n=1 Tax=Drosophila willistoni
RepID=B4NDK9_DROWI
Length = 1890
Score = 137 bits (346), Expect = 4e-31
Identities = 78/180 (43%), Positives = 109/180 (60%)
Frame = +3
Query: 9 LAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIV 188
L EW +L DRD LR ++F G++K+ L N++R+IWN ++IF + + +DLSP +++
Sbjct: 944 LESEWDRLVVDRDSLR-QIFPNGDSKVVLPCNLQRMIWNVQKIFHINKRLPTDLSPMRVI 1002
Query: 189 RGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQV 368
+GV LL R ++T ++ +S+ A NATLLFQ
Sbjct: 1003 KGVRGLLERCVIVTGND---------------------------RISKQANENATLLFQC 1035
Query: 369 HVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMT 548
VR++L +K V E RL+ +AF WL+ EIE RFQQA A GEMVGA AAQS+GEPATQMT
Sbjct: 1036 LVRSTLCTKYVSEEFRLSTEAFEWLIGEIETRFQQAQANPGEMVGALAAQSLGEPATQMT 1095
[44][TOP]
>UniRef100_B3MQ29 DNA-directed RNA polymerase n=1 Tax=Drosophila ananassae
RepID=B3MQ29_DROAN
Length = 1889
Score = 137 bits (346), Expect = 4e-31
Identities = 77/180 (42%), Positives = 110/180 (61%)
Frame = +3
Query: 9 LAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIV 188
L EW +L DRD LR ++F G++K+ L N++R+IWN ++IF + + +DLSP +++
Sbjct: 944 LEAEWDRLVTDRDSLR-QIFPNGDSKVVLPCNLQRMIWNVQKIFHINKRLPTDLSPMRVI 1002
Query: 189 RGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQV 368
+GV+ LL R ++T ++ +S+ A NATLLFQ
Sbjct: 1003 KGVKGLLERCVIVTGND---------------------------RISKQANENATLLFQC 1035
Query: 369 HVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMT 548
+R++L +K V E RL+ +AF WL+ EIE RFQQA A GEMVGA AAQS+GEPATQMT
Sbjct: 1036 LIRSTLCTKYVSEEFRLSTEAFEWLIGEIETRFQQAQANPGEMVGALAAQSLGEPATQMT 1095
[45][TOP]
>UniRef100_A9QMS7 DNA-directed RNA polymerase (Fragment) n=1 Tax=Cuticonema vivipara
RepID=A9QMS7_9BILA
Length = 407
Score = 137 bits (346), Expect = 4e-31
Identities = 78/182 (42%), Positives = 112/182 (61%)
Frame = +3
Query: 3 ELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSK 182
+ + +EW QL+ DR LR ++F TG+A + L N++R++WNA++IF V +DLSP K
Sbjct: 159 QAVEEEWIQLESDRRLLR-KIFPTGKAGVVLPCNLDRMMWNARKIFHVETRKPTDLSPLK 217
Query: 183 IVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLF 362
+++GV+ L R V+ S ED ++S+ AQ NATLL
Sbjct: 218 VIQGVKDLTSRL-VIVSGED--------------------------KISQQAQYNATLLM 250
Query: 363 QVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQ 542
+ +R++L SK + +H+L +AF WLL EIE +F QA+A GEMVGA AAQS+GEPATQ
Sbjct: 251 NILLRSTLCSKRLAEKHKLNTEAFEWLLGEIETKFNQAIAQPGEMVGALAAQSLGEPATQ 310
Query: 543 MT 548
MT
Sbjct: 311 MT 312
[46][TOP]
>UniRef100_A9QMP5 DNA-directed RNA polymerase (Fragment) n=1 Tax=Oscheius insectivora
RepID=A9QMP5_9BILA
Length = 474
Score = 137 bits (346), Expect = 4e-31
Identities = 75/182 (41%), Positives = 112/182 (61%)
Frame = +3
Query: 3 ELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSK 182
E + KEW QL++DR LR ++F TG+AK+ L N++RLIWNA++IF V + L+P +
Sbjct: 148 EEVEKEWDQLEEDRRLLR-KIFPTGDAKIVLPCNLQRLIWNAQKIFHVETRQPTSLNPLR 206
Query: 183 IVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLF 362
+++GV L + ++ D+ +S+ AQ NATLL
Sbjct: 207 VIQGVRELSEKLVIVCGDD---------------------------RISKQAQYNATLLM 239
Query: 363 QVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQ 542
+ +R++L SK + + ++L ++AF WLL E+E RF+QA+A GEMVGA AAQS+GEPATQ
Sbjct: 240 NILLRSTLCSKKMATTYKLNQEAFEWLLGEVETRFKQAIAQPGEMVGALAAQSLGEPATQ 299
Query: 543 MT 548
MT
Sbjct: 300 MT 301
[47][TOP]
>UniRef100_A9QME6 RNA polymerase 2 (Fragment) n=1 Tax=Pellioditis sp. JU274
RepID=A9QME6_9PELO
Length = 526
Score = 137 bits (346), Expect = 4e-31
Identities = 78/182 (42%), Positives = 113/182 (62%)
Frame = +3
Query: 3 ELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSK 182
+L+ +EWAQL++DR LR ++F G+AK+ L N+ RLIWNA++IF V ++L+P++
Sbjct: 56 KLVEEEWAQLEEDRRLLR-KIFPRGDAKVVLPCNLNRLIWNAQKIFKVETRKLTNLNPTR 114
Query: 183 IVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLF 362
++ GV L + ++ S ED +S+ AQ NATLL
Sbjct: 115 VIDGVRNLSKKL-IIVSGED--------------------------RISKQAQYNATLLM 147
Query: 363 QVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQ 542
+ +R++L SK + S ++L +AF WLL E+E RFQQA+A GEMVGA AAQS+GEPATQ
Sbjct: 148 NILLRSTLCSKKMASTYKLNAEAFEWLLGEVETRFQQAIAQPGEMVGALAAQSLGEPATQ 207
Query: 543 MT 548
MT
Sbjct: 208 MT 209
[48][TOP]
>UniRef100_Q1WKU4 Putative RNA polymerase II 215 kD subunit (Fragment) n=1
Tax=Drosophila erecta RepID=Q1WKU4_DROER
Length = 760
Score = 137 bits (345), Expect = 5e-31
Identities = 77/180 (42%), Positives = 110/180 (61%)
Frame = +3
Query: 9 LAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIV 188
L EW +L DRD LR ++F G++K+ L N++R+IWN ++IF + + +DLSP +++
Sbjct: 86 LEAEWDRLVGDRDSLR-QIFPNGDSKVVLPCNLQRMIWNVQKIFHINKRLPTDLSPMRVI 144
Query: 189 RGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQV 368
+GV+ LL R ++T ++ +S+ A NATLLFQ
Sbjct: 145 KGVKGLLERCVIVTGND---------------------------RISKQANENATLLFQC 177
Query: 369 HVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMT 548
+R++L +K V E RL+ +AF WL+ EIE RFQQA A GEMVGA AAQS+GEPATQMT
Sbjct: 178 LIRSTLCTKYVSEEFRLSTEAFEWLIGEIETRFQQAQANPGEMVGALAAQSLGEPATQMT 237
[49][TOP]
>UniRef100_Q1WKU0 Putative RNA polymerase II 215 kD subunit (Fragment) n=2
Tax=melanogaster subgroup RepID=Q1WKU0_DROYA
Length = 766
Score = 137 bits (345), Expect = 5e-31
Identities = 77/180 (42%), Positives = 110/180 (61%)
Frame = +3
Query: 9 LAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIV 188
L EW +L DRD LR ++F G++K+ L N++R+IWN ++IF + + +DLSP +++
Sbjct: 86 LEAEWDRLVGDRDSLR-QIFPNGDSKVVLPCNLQRMIWNVQKIFHINKRLPTDLSPMRVI 144
Query: 189 RGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQV 368
+GV+ LL R ++T ++ +S+ A NATLLFQ
Sbjct: 145 KGVKGLLERCVIVTGND---------------------------RISKQANENATLLFQC 177
Query: 369 HVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMT 548
+R++L +K V E RL+ +AF WL+ EIE RFQQA A GEMVGA AAQS+GEPATQMT
Sbjct: 178 LIRSTLCTKYVSEEFRLSTEAFEWLIGEIETRFQQAQANPGEMVGALAAQSLGEPATQMT 237
[50][TOP]
>UniRef100_O01375 DNA-directed RNA polymerase (Fragment) n=1 Tax=Teratorhabditis
palmarum RepID=O01375_9BILA
Length = 631
Score = 137 bits (345), Expect = 5e-31
Identities = 78/178 (43%), Positives = 109/178 (61%)
Frame = +3
Query: 15 KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 194
+EW QL++DR LR ++F G+ K+ L N++RLIWNA++IF + +DLSP +++ G
Sbjct: 159 EEWQQLEEDRRLLR-KIFPKGDNKVVLPCNLQRLIWNAQKIFKIETRKVTDLSPVRVIEG 217
Query: 195 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 374
+ L + V+ S ED +S+ AQ NATLL + +
Sbjct: 218 IRELSKKL-VIVSGED--------------------------RISKQAQYNATLLMNILI 250
Query: 375 RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMT 548
R++L SK V S H+L +AF WLL EIE+RF+QA+A GEMVGA AAQS+GEPATQMT
Sbjct: 251 RSTLCSKRVASMHKLNNEAFDWLLGEIEHRFKQAIAQPGEMVGALAAQSLGEPATQMT 308
[51][TOP]
>UniRef100_B4PY98 DNA-directed RNA polymerase n=1 Tax=Drosophila yakuba
RepID=B4PY98_DROYA
Length = 1889
Score = 137 bits (345), Expect = 5e-31
Identities = 77/180 (42%), Positives = 110/180 (61%)
Frame = +3
Query: 9 LAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIV 188
L EW +L DRD LR ++F G++K+ L N++R+IWN ++IF + + +DLSP +++
Sbjct: 944 LEAEWDRLVGDRDSLR-QIFPNGDSKVVLPCNLQRMIWNVQKIFHINKRLPTDLSPMRVI 1002
Query: 189 RGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQV 368
+GV+ LL R ++T ++ +S+ A NATLLFQ
Sbjct: 1003 KGVKGLLERCVIVTGND---------------------------RISKQANENATLLFQC 1035
Query: 369 HVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMT 548
+R++L +K V E RL+ +AF WL+ EIE RFQQA A GEMVGA AAQS+GEPATQMT
Sbjct: 1036 LIRSTLCTKYVSEEFRLSTEAFEWLIGEIETRFQQAQANPGEMVGALAAQSLGEPATQMT 1095
[52][TOP]
>UniRef100_B3NUC1 DNA-directed RNA polymerase n=1 Tax=Drosophila erecta
RepID=B3NUC1_DROER
Length = 1889
Score = 137 bits (345), Expect = 5e-31
Identities = 77/180 (42%), Positives = 110/180 (61%)
Frame = +3
Query: 9 LAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIV 188
L EW +L DRD LR ++F G++K+ L N++R+IWN ++IF + + +DLSP +++
Sbjct: 944 LEAEWDRLVGDRDSLR-QIFPNGDSKVVLPCNLQRMIWNVQKIFHINKRLPTDLSPMRVI 1002
Query: 189 RGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQV 368
+GV+ LL R ++T ++ +S+ A NATLLFQ
Sbjct: 1003 KGVKGLLERCVIVTGND---------------------------RISKQANENATLLFQC 1035
Query: 369 HVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMT 548
+R++L +K V E RL+ +AF WL+ EIE RFQQA A GEMVGA AAQS+GEPATQMT
Sbjct: 1036 LIRSTLCTKYVSEEFRLSTEAFEWLIGEIETRFQQAQANPGEMVGALAAQSLGEPATQMT 1095
[53][TOP]
>UniRef100_Q25203 DNA-directed RNA polymerase (Fragment) n=1 Tax=Ilyanassa obsoleta
RepID=Q25203_9CAEN
Length = 1343
Score = 137 bits (344), Expect = 7e-31
Identities = 80/182 (43%), Positives = 105/182 (57%)
Frame = +3
Query: 3 ELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSK 182
E L EW QL DRD R +VF TG+A++ L N++R+IWNA++IF + + SDL P
Sbjct: 864 EELESEWLQLISDRDSAR-QVFSTGDARIVLPCNLQRMIWNAQKIFRIDKRKPSDLDPIN 922
Query: 183 IVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLF 362
+V GV L R ++ ++ +S+ A NATLL
Sbjct: 923 VVSGVRDLCQRLTIVEGED---------------------------MISKQANENATLLM 955
Query: 363 QVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQ 542
+ +R++L +K V EHRL+ AF WLL EIE RFQQA A GEMVGA AAQS+GEPATQ
Sbjct: 956 KCLIRSTLCAKRVAEEHRLSEDAFNWLLGEIETRFQQAQAHPGEMVGALAAQSLGEPATQ 1015
Query: 543 MT 548
MT
Sbjct: 1016 MT 1017
[54][TOP]
>UniRef100_Q1WKU3 Putative RNA polymerase II 215 kD subunit (Fragment) n=1
Tax=Drosophila orena RepID=Q1WKU3_DROOR
Length = 750
Score = 137 bits (344), Expect = 7e-31
Identities = 77/180 (42%), Positives = 109/180 (60%)
Frame = +3
Query: 9 LAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIV 188
L EW L DRD LR ++F G++K+ L N++R+IWN ++IF + + +DLSP +++
Sbjct: 86 LEAEWDHLVGDRDSLR-QIFPNGDSKVVLPCNLQRMIWNVQKIFHINKRLPTDLSPMRVI 144
Query: 189 RGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQV 368
+GV+ LL R ++T ++ +S+ A NATLLFQ
Sbjct: 145 KGVKGLLERCVIVTGND---------------------------RISKQANENATLLFQC 177
Query: 369 HVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMT 548
+R++L +K V E RL+ +AF WL+ EIE RFQQA A GEMVGA AAQS+GEPATQMT
Sbjct: 178 LIRSTLCTKYVSEEFRLSTEAFEWLIGEIETRFQQAQANPGEMVGALAAQSLGEPATQMT 237
[55][TOP]
>UniRef100_A9QMH3 DNA-directed RNA polymerase (Fragment) n=1 Tax=Rhabditis sp. PS1130
RepID=A9QMH3_9BILA
Length = 619
Score = 137 bits (344), Expect = 7e-31
Identities = 76/178 (42%), Positives = 111/178 (62%)
Frame = +3
Query: 15 KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 194
+EW QL++DR LR ++F +G AK+ L N++RL+WNA++IF V +DL+P +++ G
Sbjct: 155 QEWGQLEEDRRLLR-KIFPSGNAKIVLPCNLQRLLWNAQKIFHVETRKPTDLNPLRVIEG 213
Query: 195 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 374
V L + ++ S ED ++S+ AQ NATLL + V
Sbjct: 214 VRELSKKL-IIVSGED--------------------------KISKQAQYNATLLMNILV 246
Query: 375 RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMT 548
R++L SK + S+++L +AF WLL E+E RF+QA+A GEMVGA AAQS+GEPATQMT
Sbjct: 247 RSTLCSKKMASKYKLNSEAFEWLLGEVETRFKQAIAQPGEMVGALAAQSLGEPATQMT 304
[56][TOP]
>UniRef100_B4YT54 DNA-directed RNA polymerase (Fragment) n=2 Tax=Odontium subgenus
complex RepID=B4YT54_9CARA
Length = 473
Score = 136 bits (343), Expect = 9e-31
Identities = 78/177 (44%), Positives = 109/177 (61%)
Frame = +3
Query: 9 LAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIV 188
L +EW QL +DR+ LR ++F +GE+K+ L N++R+IWN ++IF + + +DLSP +++
Sbjct: 325 LEREWEQLSRDREALR-QIFPSGESKVVLPCNLQRMIWNVQKIFHINKRSPTDLSPIRVI 383
Query: 189 RGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQV 368
+GV LL + V+ + ED LS+ A NATLLFQ
Sbjct: 384 QGVRDLLQKC-VIVAGED--------------------------RLSKQANENATLLFQC 416
Query: 369 HVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPAT 539
VRA+L +K V E RL+ +AF WL+ EIE RFQQA + GEMVGA AAQS+GEPAT
Sbjct: 417 LVRATLCTKCVSEEFRLSTEAFEWLIGEIETRFQQAQSAPGEMVGALAAQSLGEPAT 473
[57][TOP]
>UniRef100_B4YT49 DNA-directed RNA polymerase (Fragment) n=1 Tax=Bembidion
mandibulare RepID=B4YT49_9CARA
Length = 562
Score = 136 bits (343), Expect = 9e-31
Identities = 78/177 (44%), Positives = 109/177 (61%)
Frame = +3
Query: 9 LAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIV 188
L +EW QL +DR+ LR ++F +GE+K+ L N++R+IWN ++IF + + +DLSP +++
Sbjct: 414 LEREWEQLSRDREALR-QIFPSGESKVVLPCNLQRMIWNVQKIFHINKRSPTDLSPIRVI 472
Query: 189 RGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQV 368
+GV LL + V+ + ED LS+ A NATLLFQ
Sbjct: 473 QGVRDLLQKC-VIVAGED--------------------------RLSKQANENATLLFQC 505
Query: 369 HVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPAT 539
VRA+L +K V E RL+ +AF WL+ EIE RFQQA + GEMVGA AAQS+GEPAT
Sbjct: 506 LVRATLCTKCVSEEFRLSTEAFEWLIGEIETRFQQAQSAPGEMVGALAAQSLGEPAT 562
[58][TOP]
>UniRef100_B4YT48 DNA-directed RNA polymerase (Fragment) n=2 Tax=Notaphus
RepID=B4YT48_9CARA
Length = 562
Score = 136 bits (343), Expect = 9e-31
Identities = 78/177 (44%), Positives = 109/177 (61%)
Frame = +3
Query: 9 LAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIV 188
L +EW QL +DR+ LR ++F +GE+K+ L N++R+IWN ++IF + + +DLSP +++
Sbjct: 414 LEREWEQLSRDREALR-QIFPSGESKVVLPCNLQRMIWNVQKIFHINKRSPTDLSPIRVI 472
Query: 189 RGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQV 368
+GV LL + V+ + ED LS+ A NATLLFQ
Sbjct: 473 QGVRDLLQKC-VIVAGED--------------------------RLSKQANENATLLFQC 505
Query: 369 HVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPAT 539
VRA+L +K V E RL+ +AF WL+ EIE RFQQA + GEMVGA AAQS+GEPAT
Sbjct: 506 LVRATLCTKCVSEEFRLSTEAFEWLIGEIETRFQQAQSAPGEMVGALAAQSLGEPAT 562
[59][TOP]
>UniRef100_B4YT46 DNA-directed RNA polymerase (Fragment) n=3 Tax=Bembidion
RepID=B4YT46_9CARA
Length = 562
Score = 136 bits (343), Expect = 9e-31
Identities = 78/177 (44%), Positives = 109/177 (61%)
Frame = +3
Query: 9 LAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIV 188
L +EW QL +DR+ LR ++F +GE+K+ L N++R+IWN ++IF + + +DLSP +++
Sbjct: 414 LEREWEQLSRDREALR-QIFPSGESKVVLPCNLQRMIWNVQKIFHINKRSPTDLSPIRVI 472
Query: 189 RGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQV 368
+GV LL + V+ + ED LS+ A NATLLFQ
Sbjct: 473 QGVRDLLQKC-VIVAGED--------------------------RLSKQANENATLLFQC 505
Query: 369 HVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPAT 539
VRA+L +K V E RL+ +AF WL+ EIE RFQQA + GEMVGA AAQS+GEPAT
Sbjct: 506 LVRATLCTKCVSEEFRLSTEAFEWLIGEIETRFQQAQSAPGEMVGALAAQSLGEPAT 562
[60][TOP]
>UniRef100_B4YT44 DNA-directed RNA polymerase (Fragment) n=1 Tax=Asaphidion yukonense
RepID=B4YT44_9CARA
Length = 562
Score = 136 bits (343), Expect = 9e-31
Identities = 78/177 (44%), Positives = 109/177 (61%)
Frame = +3
Query: 9 LAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIV 188
L +EW QL +DR+ LR ++F +GE+K+ L N++R+IWN ++IF + + +DLSP +++
Sbjct: 414 LEREWEQLSRDREALR-QIFPSGESKVVLPCNLQRMIWNVQKIFHINKRSPTDLSPIRVI 472
Query: 189 RGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQV 368
+GV LL + V+ + ED LS+ A NATLLFQ
Sbjct: 473 QGVRDLLQKC-VIVAGED--------------------------RLSKLANENATLLFQC 505
Query: 369 HVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPAT 539
VRA+L +K V E RL+ +AF WL+ EIE RFQQA + GEMVGA AAQS+GEPAT
Sbjct: 506 LVRATLCTKCVSEEFRLSTEAFEWLIGEIETRFQQAQSAPGEMVGALAAQSLGEPAT 562
[61][TOP]
>UniRef100_B3FA71 RNA polymerase II largest subunit (Fragment) n=2 Tax=Pseudoperyphus
RepID=B3FA71_9CARA
Length = 227
Score = 136 bits (343), Expect = 9e-31
Identities = 78/177 (44%), Positives = 109/177 (61%)
Frame = +3
Query: 9 LAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIV 188
L +EW QL +DR+ LR ++F +GE+K+ L N++R+IWN ++IF + + +DLSP +++
Sbjct: 79 LEREWEQLSRDREALR-QIFPSGESKVVLPCNLQRMIWNVQKIFHINKRSPTDLSPIRVI 137
Query: 189 RGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQV 368
+GV LL + V+ + ED LS+ A NATLLFQ
Sbjct: 138 QGVRDLLQKC-VIVAGED--------------------------RLSKQANENATLLFQC 170
Query: 369 HVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPAT 539
VRA+L +K V E RL+ +AF WL+ EIE RFQQA + GEMVGA AAQS+GEPAT
Sbjct: 171 LVRATLCTKCVSEEFRLSTEAFEWLIGEIETRFQQAQSAPGEMVGALAAQSLGEPAT 227
[62][TOP]
>UniRef100_B3FA50 RNA polymerase II largest subunit (Fragment) n=1 Tax=Bembidion
coxendix RepID=B3FA50_9CARA
Length = 225
Score = 136 bits (343), Expect = 9e-31
Identities = 78/177 (44%), Positives = 109/177 (61%)
Frame = +3
Query: 9 LAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIV 188
L +EW QL +DR+ LR ++F +GE+K+ L N++R+IWN ++IF + + +DLSP +++
Sbjct: 77 LEREWEQLSRDREALR-QIFPSGESKVVLPCNLQRMIWNVQKIFHINKRSPTDLSPIRVI 135
Query: 189 RGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQV 368
+GV LL + V+ + ED LS+ A NATLLFQ
Sbjct: 136 QGVRDLLQKC-VIVAGED--------------------------RLSKQANENATLLFQC 168
Query: 369 HVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPAT 539
VRA+L +K V E RL+ +AF WL+ EIE RFQQA + GEMVGA AAQS+GEPAT
Sbjct: 169 LVRATLCTKCVSEEFRLSTEAFEWLIGEIETRFQQAQSAPGEMVGALAAQSLGEPAT 225
[63][TOP]
>UniRef100_B3FA43 RNA polymerase II largest subunit (Fragment) n=16 Tax=Bembidion
RepID=B3FA43_9CARA
Length = 227
Score = 136 bits (343), Expect = 9e-31
Identities = 78/177 (44%), Positives = 109/177 (61%)
Frame = +3
Query: 9 LAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIV 188
L +EW QL +DR+ LR ++F +GE+K+ L N++R+IWN ++IF + + +DLSP +++
Sbjct: 79 LEREWEQLSRDREALR-QIFPSGESKVVLPCNLQRMIWNVQKIFHINKRSPTDLSPIRVI 137
Query: 189 RGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQV 368
+GV LL + V+ + ED LS+ A NATLLFQ
Sbjct: 138 QGVRDLLQKC-VIVAGED--------------------------RLSKQANENATLLFQC 170
Query: 369 HVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPAT 539
VRA+L +K V E RL+ +AF WL+ EIE RFQQA + GEMVGA AAQS+GEPAT
Sbjct: 171 LVRATLCTKCVSEEFRLSTEAFEWLIGEIETRFQQAQSAPGEMVGALAAQSLGEPAT 227
[64][TOP]
>UniRef100_A9QME1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Rhabditis brassicae
RepID=A9QME1_9BILA
Length = 628
Score = 136 bits (343), Expect = 9e-31
Identities = 76/178 (42%), Positives = 109/178 (61%)
Frame = +3
Query: 15 KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 194
+EW QL++DR LR ++F G AK+ L N++RL+WNA++IF V +DL+P +++ G
Sbjct: 156 QEWGQLEEDRRLLR-KIFPNGNAKIVLPCNLQRLLWNAQKIFHVETRKPTDLNPLRVIEG 214
Query: 195 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 374
V L + ++ S ED +S+ AQ NATLL + V
Sbjct: 215 VRELSQKL-IIVSGED--------------------------RISKQAQYNATLLMNILV 247
Query: 375 RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMT 548
R++L SK + S+++L +AF WLL E+E RF+QA+A GEMVGA AAQS+GEPATQMT
Sbjct: 248 RSTLCSKKMASKYKLNSEAFEWLLGEVETRFKQAIAQPGEMVGALAAQSLGEPATQMT 305
[65][TOP]
>UniRef100_Q4SF83 DNA-directed RNA polymerase (Fragment) n=1 Tax=Tetraodon nigroviridis
RepID=Q4SF83_TETNG
Length = 1745
Score = 136 bits (342), Expect = 1e-30
Identities = 79/188 (42%), Positives = 114/188 (60%), Gaps = 8/188 (4%)
Frame = +3
Query: 9 LAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIV 188
L +E+ ++K+DR+ LR +F TG++K+ L N+ R+IWNA++IF + +DLSP ++V
Sbjct: 826 LEREFEKMKEDREILR-AIFPTGDSKVVLPCNLARMIWNAQKIFRINTRTPTDLSPLRVV 884
Query: 189 RGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALK--------ELSETAQL 344
G+ + + S +IA SG + + K LS AQ
Sbjct: 885 EGILSSVSLNEICCSPPFTLNISIADIQFEHVFGLSGTHELSKKLVIVNGDDPLSRQAQQ 944
Query: 345 NATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSI 524
NATLLF +H+R++L SK + E RL+ +AF WLL EIE +F Q++A GEMVGA AAQS+
Sbjct: 945 NATLLFNIHLRSTLCSKRMTEEFRLSTEAFDWLLGEIETKFNQSIAHPGEMVGALAAQSL 1004
Query: 525 GEPATQMT 548
GEPATQMT
Sbjct: 1005 GEPATQMT 1012
[66][TOP]
>UniRef100_Q9XZU9 DNA-directed RNA polymerase n=1 Tax=Drosophila subobscura
RepID=Q9XZU9_DROSU
Length = 1889
Score = 136 bits (342), Expect = 1e-30
Identities = 77/180 (42%), Positives = 107/180 (59%)
Frame = +3
Query: 9 LAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIV 188
L EW L DRD LR +F G++K+ L N++R+IWN ++IF + + +DLSP +++
Sbjct: 944 LESEWDHLMHDRDNLR-VIFPNGDSKVVLPCNLQRMIWNVQKIFHINKRLPTDLSPMRVI 1002
Query: 189 RGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQV 368
+GV+ LL R ++T + +S+ A NATLLFQ
Sbjct: 1003 KGVKTLLERCVIVTGAD---------------------------RISKQANENATLLFQC 1035
Query: 369 HVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMT 548
+R++L +K V E RL+ +AF WL+ EIE RFQQA A GEMVGA AAQS+GEPATQMT
Sbjct: 1036 LIRSTLCTKYVSEEFRLSTEAFEWLIGEIETRFQQAQANPGEMVGALAAQSLGEPATQMT 1095
[67][TOP]
>UniRef100_Q9XZS2 DNA-directed RNA polymerase n=1 Tax=Drosophila madeirensis
RepID=Q9XZS2_DROMD
Length = 1889
Score = 136 bits (342), Expect = 1e-30
Identities = 77/180 (42%), Positives = 107/180 (59%)
Frame = +3
Query: 9 LAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIV 188
L EW L DRD LR +F G++K+ L N++R+IWN ++IF + + +DLSP +++
Sbjct: 944 LESEWDNLMHDRDNLR-VIFPNGDSKVVLPCNLQRMIWNVQKIFHINKRLPTDLSPMRVI 1002
Query: 189 RGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQV 368
+GV+ LL R ++T + +S+ A NATLLFQ
Sbjct: 1003 KGVKTLLERCVIVTGAD---------------------------RISKQANENATLLFQC 1035
Query: 369 HVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMT 548
+R++L +K V E RL+ +AF WL+ EIE RFQQA A GEMVGA AAQS+GEPATQMT
Sbjct: 1036 LIRSTLCTKYVSEEFRLSTEAFEWLIGEIETRFQQAQANPGEMVGALAAQSLGEPATQMT 1095
[68][TOP]
>UniRef100_Q9XZS1 DNA-directed RNA polymerase n=1 Tax=Drosophila guanche
RepID=Q9XZS1_DROGU
Length = 1889
Score = 136 bits (342), Expect = 1e-30
Identities = 77/180 (42%), Positives = 107/180 (59%)
Frame = +3
Query: 9 LAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIV 188
L EW L DRD LR +F G++K+ L N++R+IWN ++IF + + +DLSP +++
Sbjct: 944 LESEWDHLMHDRDNLR-VIFPNGDSKVVLPCNLQRMIWNVQKIFHINKRLPTDLSPMRVI 1002
Query: 189 RGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQV 368
+GV+ LL R ++T + +S+ A NATLLFQ
Sbjct: 1003 KGVKTLLERCVIVTGAD---------------------------RISKQANENATLLFQC 1035
Query: 369 HVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMT 548
+R++L +K V E RL+ +AF WL+ EIE RFQQA A GEMVGA AAQS+GEPATQMT
Sbjct: 1036 LIRSTLCTKYVSEEFRLSTEAFEWLIGEIETRFQQAQANPGEMVGALAAQSLGEPATQMT 1095
[69][TOP]
>UniRef100_P90678 DNA-directed RNA polymerase (Fragment) n=1 Tax=Aduncospiculum
halicti RepID=P90678_9BILA
Length = 631
Score = 136 bits (342), Expect = 1e-30
Identities = 75/177 (42%), Positives = 106/177 (59%)
Frame = +3
Query: 18 EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 197
EW QL+ DR LR ++F G+AK+ L N++RLIWNA++IF V +DL+P ++++GV
Sbjct: 160 EWMQLQDDRQLLR-KIFPKGDAKIVLPCNLQRLIWNAQKIFHVETRKVTDLNPVRVIQGV 218
Query: 198 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 377
+ + ++ D+ +S AQ NATLL + VR
Sbjct: 219 REVSKKLIIVGGDD---------------------------RISVQAQYNATLLMNILVR 251
Query: 378 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMT 548
++L +K + +H+L +AF WLL EIE RFQQA+A GEMVGA AAQS+GEPATQMT
Sbjct: 252 STLCAKAMAEKHKLNAEAFEWLLGEIETRFQQAIAQPGEMVGALAAQSLGEPATQMT 308
[70][TOP]
>UniRef100_B4YT45 RNA polymerase II large subunit (Fragment) n=1 Tax=Sirdenus grayii
RepID=B4YT45_9CARA
Length = 227
Score = 136 bits (342), Expect = 1e-30
Identities = 78/177 (44%), Positives = 108/177 (61%)
Frame = +3
Query: 9 LAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIV 188
L +EW QL +DR+ LR ++F +GE+K+ L N++R+IWN ++IF + + +DLSP +++
Sbjct: 79 LEREWEQLSRDREALR-QIFPSGESKVVLPCNLQRMIWNVQKIFHINKRSPTDLSPIRVI 137
Query: 189 RGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQV 368
+GV LL + V+ + ED LS+ A NATLLFQ
Sbjct: 138 QGVRDLLQKC-VIVAGED--------------------------RLSKQANENATLLFQC 170
Query: 369 HVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPAT 539
VRA+L +K V E RL+ +AF WL+ EIE RFQQA GEMVGA AAQS+GEPAT
Sbjct: 171 LVRATLCTKYVSEEFRLSTEAFEWLIGEIETRFQQAQCAPGEMVGALAAQSLGEPAT 227
[71][TOP]
>UniRef100_UPI0000546D90 PREDICTED: im:7136071 isoform 1 n=1 Tax=Danio rerio
RepID=UPI0000546D90
Length = 1972
Score = 135 bits (341), Expect = 1e-30
Identities = 74/180 (41%), Positives = 112/180 (62%)
Frame = +3
Query: 9 LAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIV 188
L +E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++IF + +DL+P+++V
Sbjct: 949 LEREFEKMREDREILR-AIFPTGDSKVVLPCNLARMIWNAQKIFRINPRAPTDLNPARVV 1007
Query: 189 RGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQV 368
GV+ L + ++ D+ +LS AQ NATLLF +
Sbjct: 1008 DGVKELSKKLVIVNGDD---------------------------QLSRQAQENATLLFNI 1040
Query: 369 HVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMT 548
H+R++L SK + E RL+ +AF WLL EIE +F Q++A GEMVGA AAQS+GEPATQMT
Sbjct: 1041 HLRSTLCSKRMTEEFRLSTEAFDWLLGEIETKFNQSIAHPGEMVGALAAQSLGEPATQMT 1100
[72][TOP]
>UniRef100_Q9NJN3 RNA polymerase II largest subunit (Fragment) n=1 Tax=Armadillidium
vulgare RepID=Q9NJN3_ARMVU
Length = 433
Score = 135 bits (341), Expect = 1e-30
Identities = 77/181 (42%), Positives = 108/181 (59%)
Frame = +3
Query: 6 LLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKI 185
+L EW +L++DR LR +VF G+ K+ L N+ER+IWN ++IF + + ++DLSP K+
Sbjct: 108 ILEVEWQKLQEDRVALR-QVFPKGDTKVVLPCNLERMIWNVQKIFHINKRMQTDLSPIKV 166
Query: 186 VRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQ 365
V GV L + +++ ++ +S A NATLLF
Sbjct: 167 VEGVNETLRKCMIVSGED---------------------------RISVQANENATLLFH 199
Query: 366 VHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQM 545
VR++L +K V E+RLT +AF WL+ EIE RF QA+A GEMVGA AAQS+GEPATQM
Sbjct: 200 CLVRSTLCTKKVSEEYRLTTEAFNWLMGEIETRFNQAIANPGEMVGALAAQSLGEPATQM 259
Query: 546 T 548
T
Sbjct: 260 T 260
[73][TOP]
>UniRef100_Q6JU60 DNA-directed RNA polymerase (Fragment) n=1 Tax=Armadillidium
vulgare RepID=Q6JU60_ARMVU
Length = 736
Score = 135 bits (341), Expect = 1e-30
Identities = 77/181 (42%), Positives = 108/181 (59%)
Frame = +3
Query: 6 LLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKI 185
+L EW +L++DR LR +VF G+ K+ L N+ER+IWN ++IF + + ++DLSP K+
Sbjct: 411 ILEVEWQKLQEDRVALR-QVFPKGDTKVVLPCNLERMIWNVQKIFHINKRMQTDLSPIKV 469
Query: 186 VRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQ 365
V GV L + +++ ++ +S A NATLLF
Sbjct: 470 VEGVNETLRKCMIVSGED---------------------------RISVQANENATLLFH 502
Query: 366 VHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQM 545
VR++L +K V E+RLT +AF WL+ EIE RF QA+A GEMVGA AAQS+GEPATQM
Sbjct: 503 CLVRSTLCTKKVSEEYRLTTEAFNWLMGEIETRFNQAIANPGEMVGALAAQSLGEPATQM 562
Query: 546 T 548
T
Sbjct: 563 T 563
[74][TOP]
>UniRef100_A9QMR5 DNA-directed RNA polymerase (Fragment) n=1 Tax=Rhabditoides
inermiformis RepID=A9QMR5_9BILA
Length = 524
Score = 135 bits (341), Expect = 1e-30
Identities = 76/177 (42%), Positives = 108/177 (61%)
Frame = +3
Query: 18 EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 197
EW QL++DR LR ++F G++K+ L N++RLIWNA++IF V ++S L+P +++ GV
Sbjct: 154 EWLQLEEDRRLLR-KIFPKGDSKVVLPCNLQRLIWNAQKIFHVETREKSSLNPLRVIAGV 212
Query: 198 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 377
+ + V+ ED +S+ AQ NATLL + VR
Sbjct: 213 REMSQKL-VIVGGED--------------------------RISKQAQYNATLLMNILVR 245
Query: 378 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMT 548
++L SK + ++RL +AF WLL E+E RFQQA+A GEMVGA AAQS+GEPATQMT
Sbjct: 246 STLCSKQMADKYRLNAQAFEWLLGEVETRFQQAIAQPGEMVGALAAQSLGEPATQMT 302
[75][TOP]
>UniRef100_A9QMF9 DNA-directed RNA polymerase (Fragment) n=1 Tax=Rhabditis rainai
RepID=A9QMF9_9BILA
Length = 618
Score = 135 bits (341), Expect = 1e-30
Identities = 76/182 (41%), Positives = 110/182 (60%)
Frame = +3
Query: 3 ELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSK 182
E + EWAQL++DR LR ++F TG AK+ L N++RLIWN ++IF V + L+P K
Sbjct: 150 ETVEAEWAQLEEDRRLLR-KIFPTGNAKVVLPCNLQRLIWNXQKIFRVETRKPTSLNPLK 208
Query: 183 IVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLF 362
++ GV+ L + +++ D+ +S+ AQ NATLL
Sbjct: 209 VISGVQELSKKLIIVSGDDS---------------------------ISKQAQYNATLLM 241
Query: 363 QVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQ 542
+ +R++L SK + S ++L +AF WLL E+E RF+QA+A GEMVGA AAQS+GEPATQ
Sbjct: 242 NILLRSTLCSKRMASMYKLNSEAFEWLLGEVETRFKQAIAQPGEMVGALAAQSLGEPATQ 301
Query: 543 MT 548
MT
Sbjct: 302 MT 303
[76][TOP]
>UniRef100_A9QMF4 RNA polymerase 2 (Fragment) n=1 Tax=Rhabditoides inermiformis
RepID=A9QMF4_9BILA
Length = 597
Score = 135 bits (341), Expect = 1e-30
Identities = 76/177 (42%), Positives = 108/177 (61%)
Frame = +3
Query: 18 EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 197
EW QL++DR LR ++F G++K+ L N++RLIWNA++IF V ++S L+P +++ GV
Sbjct: 122 EWLQLEEDRRLLR-KIFPKGDSKVVLPCNLQRLIWNAQKIFHVETREKSSLNPLRVIAGV 180
Query: 198 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 377
+ + V+ ED +S+ AQ NATLL + VR
Sbjct: 181 REMSQKL-VIVGGED--------------------------RISKQAQYNATLLMNILVR 213
Query: 378 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMT 548
++L SK + ++RL +AF WLL E+E RFQQA+A GEMVGA AAQS+GEPATQMT
Sbjct: 214 STLCSKQMADKYRLNAQAFEWLLGEVETRFQQAIAQPGEMVGALAAQSLGEPATQMT 270
[77][TOP]
>UniRef100_UPI00017B0A92 UPI00017B0A92 related cluster n=1 Tax=Tetraodon nigroviridis
RepID=UPI00017B0A92
Length = 1714
Score = 135 bits (340), Expect = 2e-30
Identities = 75/180 (41%), Positives = 108/180 (60%)
Frame = +3
Query: 9 LAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIV 188
L +E+ ++K+DR+ LR +F TG++K+ L N+ R+IWNA++IF + +DLSP ++V
Sbjct: 930 LEREFEKMKEDREILR-AIFPTGDSKVVLPCNLARMIWNAQKIFRINTRTPTDLSPLRVV 988
Query: 189 RGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQV 368
G L + ++ D+ LS AQ NATLLF +
Sbjct: 989 EGTHELSKKLVIVNGDDP---------------------------LSRQAQQNATLLFNI 1021
Query: 369 HVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMT 548
H+R++L SK + E RL+ +AF WLL EIE +F Q++A GEMVGA AAQS+GEPATQMT
Sbjct: 1022 HLRSTLCSKRMTEEFRLSTEAFDWLLGEIETKFNQSIAHPGEMVGALAAQSLGEPATQMT 1081
[78][TOP]
>UniRef100_Q6E228 DNA-directed RNA polymerase (Fragment) n=1 Tax=Rhabditella axei
RepID=Q6E228_9BILA
Length = 621
Score = 135 bits (340), Expect = 2e-30
Identities = 75/177 (42%), Positives = 110/177 (62%)
Frame = +3
Query: 18 EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 197
EW QL++DR LR ++F TG+AK+ L N++RLIWNA++IF V +DL+P +++ G+
Sbjct: 164 EWHQLEEDRRLLR-KIFPTGDAKIVLPCNLQRLIWNAQKIFHVETRKPTDLNPLRVIDGI 222
Query: 198 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 377
+ L + ++ S ED +S+ AQ NATLL + +R
Sbjct: 223 KELSSKL-IIVSGED--------------------------RISQQAQYNATLLMNILIR 255
Query: 378 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMT 548
++L SK + S ++L ++F WL+ EIE RF+QA+A GEMVGA AAQS+GEPATQMT
Sbjct: 256 STLCSKKMASTYKLNAESFEWLIGEIETRFKQAIAQPGEMVGALAAQSLGEPATQMT 312
[79][TOP]
>UniRef100_B7PJA3 DNA-directed RNA polymerase (Fragment) n=1 Tax=Ixodes scapularis
RepID=B7PJA3_IXOSC
Length = 1937
Score = 135 bits (340), Expect = 2e-30
Identities = 78/180 (43%), Positives = 109/180 (60%)
Frame = +3
Query: 9 LAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIV 188
L KEW +LK+DR+ LR +F TG++K+ L N++R++WNA++IF V +DLSP ++V
Sbjct: 952 LEKEWERLKRDREALR-TIFPTGDSKVVLPCNLQRMLWNAQKIFRVNLRSPTDLSPLRVV 1010
Query: 189 RGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQV 368
+GVE L+ + ++ ++ LS A NATLLF+
Sbjct: 1011 QGVEELVKKLVIVPGED---------------------------HLSIQANENATLLFRS 1043
Query: 369 HVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMT 548
+RA+L SK V E RL+ ++F WLL EIE RF Q+ GEMVGA AAQS+GEPATQMT
Sbjct: 1044 LLRATLCSKRVAEEFRLSTESFEWLLGEIETRFHQSQGQPGEMVGALAAQSLGEPATQMT 1103
[80][TOP]
>UniRef100_B4YT39 RNA polymerase II large subunit (Fragment) n=1 Tax=Pterostichus
melanarius RepID=B4YT39_PTEME
Length = 227
Score = 135 bits (340), Expect = 2e-30
Identities = 78/177 (44%), Positives = 108/177 (61%)
Frame = +3
Query: 9 LAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIV 188
L +EW QL +DR+ LR ++F +GE+K+ L N++R+IWN ++IF + + +DLSP +++
Sbjct: 79 LEREWEQLTRDREALR-QIFPSGESKVVLPCNLQRMIWNVQKIFHINKRSPTDLSPIRVI 137
Query: 189 RGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQV 368
+GV LL + V+ + ED LS+ A NATLLFQ
Sbjct: 138 QGVRDLLKKC-VIVAGED--------------------------RLSKLANENATLLFQC 170
Query: 369 HVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPAT 539
VRA+L +K V E RL+ +AF WL+ EIE RFQQA GEMVGA AAQS+GEPAT
Sbjct: 171 LVRATLCTKCVSEEFRLSTEAFEWLIGEIETRFQQAQCAPGEMVGALAAQSLGEPAT 227
[81][TOP]
>UniRef100_B4YT37 DNA-directed RNA polymerase (Fragment) n=1 Tax=Scaphinotus petersi
RepID=B4YT37_9CARA
Length = 369
Score = 135 bits (340), Expect = 2e-30
Identities = 76/177 (42%), Positives = 106/177 (59%)
Frame = +3
Query: 9 LAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIV 188
L +EW QL +DR+ LR ++F +GE+K+ L N++R+IWN ++IF + + +DLSP +++
Sbjct: 221 LEREWEQLSRDREALR-QIFPSGESKVVLPCNLQRMIWNVQKIFHINKRAPTDLSPIRVI 279
Query: 189 RGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQV 368
+GV LL + ++ + LSE A NATLLFQ
Sbjct: 280 QGVRDLLQKCVIVAGKD---------------------------RLSEQANENATLLFQC 312
Query: 369 HVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPAT 539
VRA+L +K V E RL+ +AF WL+ EIE RFQQA GEMVGA AAQS+GEPAT
Sbjct: 313 LVRATLCTKCVSEEFRLSSEAFEWLIGEIETRFQQAQCAPGEMVGALAAQSLGEPAT 369
[82][TOP]
>UniRef100_Q17085 DNA-directed RNA polymerase (Fragment) n=1 Tax=Artemia salina
RepID=Q17085_ARTSA
Length = 1341
Score = 135 bits (339), Expect = 3e-30
Identities = 81/180 (45%), Positives = 110/180 (61%)
Frame = +3
Query: 9 LAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIV 188
+ KEW L KDR+ LR +VF +GE K+ L N++R+IWNA++ F + + SDLSP +++
Sbjct: 864 IEKEWEALVKDREALR-KVFPSGENKVVLPCNLQRMIWNAQKTFHINKRMPSDLSPLRVI 922
Query: 189 RGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQV 368
+GV LL + V+ + ED +LS+ A NATLLFQ
Sbjct: 923 QGVRDLL-KNCVIVNGED--------------------------KLSKQANENATLLFQC 955
Query: 369 HVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMT 548
VR++L +K + E+RL +AF WL+ EIE RFQ A A GEMVGA AAQS+GEPATQMT
Sbjct: 956 LVRSTLCTKRLADEYRLNTEAFEWLIGEIETRFQLAQAVPGEMVGAIAAQSLGEPATQMT 1015
[83][TOP]
>UniRef100_A9QMP3 DNA-directed RNA polymerase (Fragment) n=1 Tax=Rhabditis brassicae
RepID=A9QMP3_9BILA
Length = 406
Score = 135 bits (339), Expect = 3e-30
Identities = 73/178 (41%), Positives = 108/178 (60%)
Frame = +3
Query: 15 KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 194
+EW QL++DR LR ++F G AK+ L N++RL+WNA++IF V +DL+P +++ G
Sbjct: 163 QEWGQLEEDRRLLR-KIFPNGNAKIVLPCNLQRLLWNAQKIFHVETRKPTDLNPLRVIEG 221
Query: 195 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 374
V L + +++ + +S+ AQ NATLL + V
Sbjct: 222 VRELSQKLIIVSGEN---------------------------RISKQAQYNATLLMNILV 254
Query: 375 RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMT 548
R++L SK + S+++L +AF WLL E+E RF+QA+A GEMVGA AAQS+GEPATQMT
Sbjct: 255 RSTLCSKKMASKYKLNSEAFEWLLGEVETRFKQAIAQPGEMVGALAAQSLGEPATQMT 312
[84][TOP]
>UniRef100_A9QMG1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Oscheius
dolichuroides RepID=A9QMG1_9BILA
Length = 629
Score = 135 bits (339), Expect = 3e-30
Identities = 75/182 (41%), Positives = 110/182 (60%)
Frame = +3
Query: 3 ELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSK 182
E + EWAQL++DR LR +++ TGE+K L N++RLIWNA++IF V + + L+P
Sbjct: 162 EEVENEWAQLEEDRRLLR-KIYATGESKCVLPCNLQRLIWNAQKIFHVEKREPVCLNPLN 220
Query: 183 IVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLF 362
++RGV L + ++ D+ +S+ AQ NATLL
Sbjct: 221 VIRGVRSLSEKLIIVGGDD---------------------------RISKQAQYNATLLM 253
Query: 363 QVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQ 542
+ +R++L +K + + H+L ++AF WLL EIE RF+ A+A GEMVGA AAQS+GEPATQ
Sbjct: 254 NILLRSTLCAKKMATTHKLNQEAFEWLLGEIETRFKAAIAQPGEMVGALAAQSLGEPATQ 313
Query: 543 MT 548
MT
Sbjct: 314 MT 315
[85][TOP]
>UniRef100_A9QMF2 DNA-directed RNA polymerase (Fragment) n=1 Tax=Pelodera teres
RepID=A9QMF2_9PELO
Length = 629
Score = 135 bits (339), Expect = 3e-30
Identities = 76/178 (42%), Positives = 107/178 (60%)
Frame = +3
Query: 15 KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 194
+EW QL++DR LR ++F GE+K+ L N++RLIWNA++IF V + L+P ++V+G
Sbjct: 159 EEWQQLEEDRRLLR-KIFPKGESKVVLPCNLQRLIWNAQKIFKVETRKVTALNPLRVVQG 217
Query: 195 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 374
V L + ++ D+ +S+ AQ NATLL + +
Sbjct: 218 VRDLSKKLIIVMGDD---------------------------RISKQAQYNATLLVNILI 250
Query: 375 RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMT 548
R++L SK + +HRL AF WLL EIE+RFQQA+ GEMVGA AAQS+GEPATQMT
Sbjct: 251 RSTLCSKQMSEKHRLNESAFDWLLGEIEHRFQQAIVQPGEMVGALAAQSLGEPATQMT 308
[86][TOP]
>UniRef100_Q9C428 DNA-directed RNA polymerase (Fragment) n=1 Tax=Monoblepharis
macrandra RepID=Q9C428_9FUNG
Length = 1603
Score = 135 bits (339), Expect = 3e-30
Identities = 80/182 (43%), Positives = 105/182 (57%)
Frame = +3
Query: 3 ELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSK 182
++L E+ QL +DR+ +R+ +F+ G++ PL NI RLIWNA+ + + N S+L P +
Sbjct: 872 KVLEMEYTQLVEDRNVMRNFIFRNGDSNWPLPSNIRRLIWNARNMAKISHNTLSNLRPEE 931
Query: 183 IVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLF 362
IVR V LL R V+T ++ LS AQ NATLLF
Sbjct: 932 IVRDVNDLLSRCIVITGEDG---------------------------LSTMAQHNATLLF 964
Query: 363 QVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQ 542
+ VR LA+K V +EHRL R AF WL+ EIE+RF+ A EMVG AAQSIGEPATQ
Sbjct: 965 NILVRHLLATKRVYAEHRLNRNAFRWLIGEIESRFKAAKVNPAEMVGTIAAQSIGEPATQ 1024
Query: 543 MT 548
MT
Sbjct: 1025 MT 1026
[87][TOP]
>UniRef100_B3FA52 RNA polymerase II largest subunit (Fragment) n=1 Tax=Bembidion
levettei RepID=B3FA52_9CARA
Length = 226
Score = 134 bits (338), Expect = 3e-30
Identities = 77/177 (43%), Positives = 108/177 (61%)
Frame = +3
Query: 9 LAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIV 188
L +EW QL +DR+ LR ++F +GE+K+ L N++R+IWN ++IF + + +DLSP +++
Sbjct: 78 LEREWEQLSRDREALR-QIFPSGESKVVLPCNLQRMIWNVQKIFHINKRSPTDLSPIRVI 136
Query: 189 RGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQV 368
+GV LL + V+ + ED LS+ NATLLFQ
Sbjct: 137 QGVRDLLQKC-VIVAGED--------------------------RLSKQXNENATLLFQC 169
Query: 369 HVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPAT 539
VRA+L +K V E RL+ +AF WL+ EIE RFQQA + GEMVGA AAQS+GEPAT
Sbjct: 170 LVRATLCTKCVSEEFRLSTEAFEWLIGEIETRFQQAQSAPGEMVGALAAQSLGEPAT 226
[88][TOP]
>UniRef100_B3FA46 RNA polymerase II largest subunit (Fragment) n=1 Tax=Bembidion
bifossulatum RepID=B3FA46_9CARA
Length = 227
Score = 134 bits (338), Expect = 3e-30
Identities = 77/177 (43%), Positives = 108/177 (61%)
Frame = +3
Query: 9 LAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIV 188
L +EW QL +DR+ LR ++F +GE+K+ L N++R+IWN ++IF + + +DLSP +++
Sbjct: 79 LEREWEQLSRDREALR-QIFPSGESKVVLPCNLQRMIWNVQKIFHINKRSPTDLSPIRVI 137
Query: 189 RGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQV 368
+GV LL + V+ + ED LS+ NATLLFQ
Sbjct: 138 QGVRDLLQKC-VIVAGED--------------------------RLSKQXNENATLLFQC 170
Query: 369 HVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPAT 539
VRA+L +K V E RL+ +AF WL+ EIE RFQQA + GEMVGA AAQS+GEPAT
Sbjct: 171 LVRATLCTKCVSEEFRLSTEAFEWLIGEIETRFQQAQSAPGEMVGALAAQSLGEPAT 227
[89][TOP]
>UniRef100_B3FA44 RNA polymerase II largest subunit (Fragment) n=3 Tax=Odontium
subgenus complex RepID=B3FA44_9CARA
Length = 227
Score = 134 bits (337), Expect = 4e-30
Identities = 77/177 (43%), Positives = 108/177 (61%)
Frame = +3
Query: 9 LAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIV 188
L + W QL +DR+ LR ++F +GE+K+ L N++R+IWN ++IF + + +DLSP +++
Sbjct: 79 LERXWEQLSRDREALR-QIFPSGESKVVLPCNLQRMIWNVQKIFHINKRSPTDLSPIRVI 137
Query: 189 RGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQV 368
+GV LL + V+ + ED LS+ A NATLLFQ
Sbjct: 138 QGVRDLLQKC-VIVAGED--------------------------RLSKQANENATLLFQC 170
Query: 369 HVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPAT 539
VRA+L +K V E RL+ +AF WL+ EIE RFQQA + GEMVGA AAQS+GEPAT
Sbjct: 171 LVRATLCTKCVSEEFRLSTEAFEWLIGEIETRFQQAQSAPGEMVGALAAQSLGEPAT 227
[90][TOP]
>UniRef100_B4E3V7 DNA-directed RNA polymerase n=1 Tax=Homo sapiens RepID=B4E3V7_HUMAN
Length = 1935
Score = 134 bits (337), Expect = 4e-30
Identities = 76/180 (42%), Positives = 110/180 (61%)
Frame = +3
Query: 9 LAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIV 188
L +E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++IF + SDL P K+V
Sbjct: 917 LEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVV 975
Query: 189 RGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQV 368
GV+ L + ++ D+ LS AQ NATLLF +
Sbjct: 976 EGVKKLSKKLVIVNGDDP---------------------------LSRQAQENATLLFNI 1008
Query: 369 HVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMT 548
H+R++L S+ + E RL+ +AF WLL EIE++F QA+A GEMVGA AAQS+GEPATQMT
Sbjct: 1009 HLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMT 1068
[91][TOP]
>UniRef100_UPI0001796DD3 PREDICTED: similar to DNA-directed RNA polymerase II subunit RPB1
(RNA polymerase II subunit B1) (DNA-directed RNA
polymerase II subunit A) (DNA-directed RNA polymerase III
largest subunit) n=1 Tax=Equus caballus
RepID=UPI0001796DD3
Length = 1834
Score = 134 bits (336), Expect = 6e-30
Identities = 76/180 (42%), Positives = 110/180 (61%)
Frame = +3
Query: 9 LAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIV 188
L +E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++IF + SDL P K+V
Sbjct: 952 LEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVV 1010
Query: 189 RGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQV 368
GV+ L + ++ D+ LS AQ NATLLF +
Sbjct: 1011 EGVKELSKKLVIVNGDDP---------------------------LSRQAQENATLLFNI 1043
Query: 369 HVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMT 548
H+R++L S+ + E RL+ +AF WLL EIE++F QA+A GEMVGA AAQS+GEPATQMT
Sbjct: 1044 HLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMT 1103
[92][TOP]
>UniRef100_UPI0000EBDCD2 PREDICTED: polymerase (RNA) II (DNA directed) polypeptide A, 220kDa
isoform 4 n=1 Tax=Bos taurus RepID=UPI0000EBDCD2
Length = 1970
Score = 134 bits (336), Expect = 6e-30
Identities = 76/180 (42%), Positives = 110/180 (61%)
Frame = +3
Query: 9 LAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIV 188
L +E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++IF + SDL P K+V
Sbjct: 952 LEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVV 1010
Query: 189 RGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQV 368
GV+ L + ++ D+ LS AQ NATLLF +
Sbjct: 1011 EGVKELSKKLVIVNGDDP---------------------------LSRQAQENATLLFNI 1043
Query: 369 HVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMT 548
H+R++L S+ + E RL+ +AF WLL EIE++F QA+A GEMVGA AAQS+GEPATQMT
Sbjct: 1044 HLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMT 1103
[93][TOP]
>UniRef100_UPI0000E24648 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
(RPB1) n=1 Tax=Pan troglodytes RepID=UPI0000E24648
Length = 1913
Score = 134 bits (336), Expect = 6e-30
Identities = 76/180 (42%), Positives = 110/180 (61%)
Frame = +3
Query: 9 LAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIV 188
L +E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++IF + SDL P K+V
Sbjct: 952 LEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVV 1010
Query: 189 RGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQV 368
GV+ L + ++ D+ LS AQ NATLLF +
Sbjct: 1011 EGVKELSKKLVIVNGDDP---------------------------LSRQAQENATLLFNI 1043
Query: 369 HVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMT 548
H+R++L S+ + E RL+ +AF WLL EIE++F QA+A GEMVGA AAQS+GEPATQMT
Sbjct: 1044 HLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMT 1103
[94][TOP]
>UniRef100_UPI00005A0B2C PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
(RPB1) isoform 23 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B2C
Length = 1888
Score = 134 bits (336), Expect = 6e-30
Identities = 76/180 (42%), Positives = 110/180 (61%)
Frame = +3
Query: 9 LAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIV 188
L +E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++IF + SDL P K+V
Sbjct: 952 LEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVV 1010
Query: 189 RGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQV 368
GV+ L + ++ D+ LS AQ NATLLF +
Sbjct: 1011 EGVKELSKKLVIVNGDDP---------------------------LSRQAQENATLLFNI 1043
Query: 369 HVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMT 548
H+R++L S+ + E RL+ +AF WLL EIE++F QA+A GEMVGA AAQS+GEPATQMT
Sbjct: 1044 HLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMT 1103
[95][TOP]
>UniRef100_UPI00005A0B2B PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
(RPB1) isoform 22 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B2B
Length = 1892
Score = 134 bits (336), Expect = 6e-30
Identities = 76/180 (42%), Positives = 110/180 (61%)
Frame = +3
Query: 9 LAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIV 188
L +E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++IF + SDL P K+V
Sbjct: 954 LEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVV 1012
Query: 189 RGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQV 368
GV+ L + ++ D+ LS AQ NATLLF +
Sbjct: 1013 EGVKELSKKLVIVNGDDP---------------------------LSRQAQENATLLFNI 1045
Query: 369 HVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMT 548
H+R++L S+ + E RL+ +AF WLL EIE++F QA+A GEMVGA AAQS+GEPATQMT
Sbjct: 1046 HLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMT 1105
[96][TOP]
>UniRef100_UPI00005A0B2A PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
(RPB1) isoform 21 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B2A
Length = 1896
Score = 134 bits (336), Expect = 6e-30
Identities = 76/180 (42%), Positives = 110/180 (61%)
Frame = +3
Query: 9 LAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIV 188
L +E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++IF + SDL P K+V
Sbjct: 954 LEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVV 1012
Query: 189 RGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQV 368
GV+ L + ++ D+ LS AQ NATLLF +
Sbjct: 1013 EGVKELSKKLVIVNGDDP---------------------------LSRQAQENATLLFNI 1045
Query: 369 HVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMT 548
H+R++L S+ + E RL+ +AF WLL EIE++F QA+A GEMVGA AAQS+GEPATQMT
Sbjct: 1046 HLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMT 1105
[97][TOP]
>UniRef100_UPI00005A0B29 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
(RPB1) isoform 20 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B29
Length = 1891
Score = 134 bits (336), Expect = 6e-30
Identities = 76/180 (42%), Positives = 110/180 (61%)
Frame = +3
Query: 9 LAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIV 188
L +E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++IF + SDL P K+V
Sbjct: 921 LEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVV 979
Query: 189 RGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQV 368
GV+ L + ++ D+ LS AQ NATLLF +
Sbjct: 980 EGVKELSKKLVIVNGDDP---------------------------LSRQAQENATLLFNI 1012
Query: 369 HVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMT 548
H+R++L S+ + E RL+ +AF WLL EIE++F QA+A GEMVGA AAQS+GEPATQMT
Sbjct: 1013 HLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMT 1072
[98][TOP]
>UniRef100_UPI00005A0B28 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
(RPB1) isoform 19 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B28
Length = 1908
Score = 134 bits (336), Expect = 6e-30
Identities = 76/180 (42%), Positives = 110/180 (61%)
Frame = +3
Query: 9 LAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIV 188
L +E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++IF + SDL P K+V
Sbjct: 938 LEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVV 996
Query: 189 RGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQV 368
GV+ L + ++ D+ LS AQ NATLLF +
Sbjct: 997 EGVKELSKKLVIVNGDDP---------------------------LSRQAQENATLLFNI 1029
Query: 369 HVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMT 548
H+R++L S+ + E RL+ +AF WLL EIE++F QA+A GEMVGA AAQS+GEPATQMT
Sbjct: 1030 HLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMT 1089
[99][TOP]
>UniRef100_UPI00005A0B27 PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide
A isoform 18 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B27
Length = 1831
Score = 134 bits (336), Expect = 6e-30
Identities = 76/180 (42%), Positives = 110/180 (61%)
Frame = +3
Query: 9 LAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIV 188
L +E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++IF + SDL P K+V
Sbjct: 952 LEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVV 1010
Query: 189 RGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQV 368
GV+ L + ++ D+ LS AQ NATLLF +
Sbjct: 1011 EGVKELSKKLVIVNGDDP---------------------------LSRQAQENATLLFNI 1043
Query: 369 HVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMT 548
H+R++L S+ + E RL+ +AF WLL EIE++F QA+A GEMVGA AAQS+GEPATQMT
Sbjct: 1044 HLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMT 1103
[100][TOP]
>UniRef100_UPI00005A0B26 PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide
A isoform 17 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B26
Length = 1684
Score = 134 bits (336), Expect = 6e-30
Identities = 76/180 (42%), Positives = 110/180 (61%)
Frame = +3
Query: 9 LAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIV 188
L +E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++IF + SDL P K+V
Sbjct: 942 LEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVV 1000
Query: 189 RGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQV 368
GV+ L + ++ D+ LS AQ NATLLF +
Sbjct: 1001 EGVKELSKKLVIVNGDDP---------------------------LSRQAQENATLLFNI 1033
Query: 369 HVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMT 548
H+R++L S+ + E RL+ +AF WLL EIE++F QA+A GEMVGA AAQS+GEPATQMT
Sbjct: 1034 HLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMT 1093
[101][TOP]
>UniRef100_UPI00005A0B25 PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide
A isoform 16 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B25
Length = 1752
Score = 134 bits (336), Expect = 6e-30
Identities = 76/180 (42%), Positives = 110/180 (61%)
Frame = +3
Query: 9 LAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIV 188
L +E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++IF + SDL P K+V
Sbjct: 942 LEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVV 1000
Query: 189 RGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQV 368
GV+ L + ++ D+ LS AQ NATLLF +
Sbjct: 1001 EGVKELSKKLVIVNGDDP---------------------------LSRQAQENATLLFNI 1033
Query: 369 HVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMT 548
H+R++L S+ + E RL+ +AF WLL EIE++F QA+A GEMVGA AAQS+GEPATQMT
Sbjct: 1034 HLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMT 1093
[102][TOP]
>UniRef100_UPI00005A0B24 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
(RPB1) isoform 15 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B24
Length = 1924
Score = 134 bits (336), Expect = 6e-30
Identities = 76/180 (42%), Positives = 110/180 (61%)
Frame = +3
Query: 9 LAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIV 188
L +E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++IF + SDL P K+V
Sbjct: 954 LEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVV 1012
Query: 189 RGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQV 368
GV+ L + ++ D+ LS AQ NATLLF +
Sbjct: 1013 EGVKELSKKLVIVNGDDP---------------------------LSRQAQENATLLFNI 1045
Query: 369 HVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMT 548
H+R++L S+ + E RL+ +AF WLL EIE++F QA+A GEMVGA AAQS+GEPATQMT
Sbjct: 1046 HLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMT 1105
[103][TOP]
>UniRef100_UPI00005A0B23 PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide
A isoform 14 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B23
Length = 1653
Score = 134 bits (336), Expect = 6e-30
Identities = 76/180 (42%), Positives = 110/180 (61%)
Frame = +3
Query: 9 LAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIV 188
L +E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++IF + SDL P K+V
Sbjct: 925 LEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVV 983
Query: 189 RGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQV 368
GV+ L + ++ D+ LS AQ NATLLF +
Sbjct: 984 EGVKELSKKLVIVNGDDP---------------------------LSRQAQENATLLFNI 1016
Query: 369 HVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMT 548
H+R++L S+ + E RL+ +AF WLL EIE++F QA+A GEMVGA AAQS+GEPATQMT
Sbjct: 1017 HLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMT 1076
[104][TOP]
>UniRef100_UPI00005A0B22 PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide
A isoform 13 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B22
Length = 1722
Score = 134 bits (336), Expect = 6e-30
Identities = 76/180 (42%), Positives = 110/180 (61%)
Frame = +3
Query: 9 LAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIV 188
L +E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++IF + SDL P K+V
Sbjct: 925 LEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVV 983
Query: 189 RGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQV 368
GV+ L + ++ D+ LS AQ NATLLF +
Sbjct: 984 EGVKELSKKLVIVNGDDP---------------------------LSRQAQENATLLFNI 1016
Query: 369 HVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMT 548
H+R++L S+ + E RL+ +AF WLL EIE++F QA+A GEMVGA AAQS+GEPATQMT
Sbjct: 1017 HLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMT 1076
[105][TOP]
>UniRef100_UPI00005A0B21 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
(RPB1) isoform 12 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B21
Length = 1922
Score = 134 bits (336), Expect = 6e-30
Identities = 76/180 (42%), Positives = 110/180 (61%)
Frame = +3
Query: 9 LAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIV 188
L +E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++IF + SDL P K+V
Sbjct: 952 LEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVV 1010
Query: 189 RGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQV 368
GV+ L + ++ D+ LS AQ NATLLF +
Sbjct: 1011 EGVKELSKKLVIVNGDDP---------------------------LSRQAQENATLLFNI 1043
Query: 369 HVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMT 548
H+R++L S+ + E RL+ +AF WLL EIE++F QA+A GEMVGA AAQS+GEPATQMT
Sbjct: 1044 HLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMT 1103
[106][TOP]
>UniRef100_UPI00005A0B20 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
(RPB1) isoform 11 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B20
Length = 1923
Score = 134 bits (336), Expect = 6e-30
Identities = 76/180 (42%), Positives = 110/180 (61%)
Frame = +3
Query: 9 LAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIV 188
L +E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++IF + SDL P K+V
Sbjct: 953 LEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVV 1011
Query: 189 RGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQV 368
GV+ L + ++ D+ LS AQ NATLLF +
Sbjct: 1012 EGVKELSKKLVIVNGDDP---------------------------LSRQAQENATLLFNI 1044
Query: 369 HVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMT 548
H+R++L S+ + E RL+ +AF WLL EIE++F QA+A GEMVGA AAQS+GEPATQMT
Sbjct: 1045 HLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMT 1104
[107][TOP]
>UniRef100_UPI00005A0B1F PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide
A isoform 10 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B1F
Length = 1840
Score = 134 bits (336), Expect = 6e-30
Identities = 76/180 (42%), Positives = 110/180 (61%)
Frame = +3
Query: 9 LAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIV 188
L +E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++IF + SDL P K+V
Sbjct: 948 LEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVV 1006
Query: 189 RGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQV 368
GV+ L + ++ D+ LS AQ NATLLF +
Sbjct: 1007 EGVKELSKKLVIVNGDDP---------------------------LSRQAQENATLLFNI 1039
Query: 369 HVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMT 548
H+R++L S+ + E RL+ +AF WLL EIE++F QA+A GEMVGA AAQS+GEPATQMT
Sbjct: 1040 HLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMT 1099
[108][TOP]
>UniRef100_UPI00005A0B1E PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide
A isoform 9 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B1E
Length = 1851
Score = 134 bits (336), Expect = 6e-30
Identities = 76/180 (42%), Positives = 110/180 (61%)
Frame = +3
Query: 9 LAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIV 188
L +E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++IF + SDL P K+V
Sbjct: 948 LEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVV 1006
Query: 189 RGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQV 368
GV+ L + ++ D+ LS AQ NATLLF +
Sbjct: 1007 EGVKELSKKLVIVNGDDP---------------------------LSRQAQENATLLFNI 1039
Query: 369 HVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMT 548
H+R++L S+ + E RL+ +AF WLL EIE++F QA+A GEMVGA AAQS+GEPATQMT
Sbjct: 1040 HLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMT 1099
[109][TOP]
>UniRef100_UPI00005A0B1D PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
(RPB1) isoform 1 n=2 Tax=Canis lupus familiaris
RepID=UPI00005A0B1D
Length = 1764
Score = 134 bits (336), Expect = 6e-30
Identities = 76/180 (42%), Positives = 110/180 (61%)
Frame = +3
Query: 9 LAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIV 188
L +E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++IF + SDL P K+V
Sbjct: 970 LEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVV 1028
Query: 189 RGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQV 368
GV+ L + ++ D+ LS AQ NATLLF +
Sbjct: 1029 EGVKELSKKLVIVNGDDP---------------------------LSRQAQENATLLFNI 1061
Query: 369 HVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMT 548
H+R++L S+ + E RL+ +AF WLL EIE++F QA+A GEMVGA AAQS+GEPATQMT
Sbjct: 1062 HLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMT 1121
[110][TOP]
>UniRef100_UPI00005A0B1C PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide
A isoform 8 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B1C
Length = 1719
Score = 134 bits (336), Expect = 6e-30
Identities = 76/180 (42%), Positives = 110/180 (61%)
Frame = +3
Query: 9 LAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIV 188
L +E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++IF + SDL P K+V
Sbjct: 946 LEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVV 1004
Query: 189 RGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQV 368
GV+ L + ++ D+ LS AQ NATLLF +
Sbjct: 1005 EGVKELSKKLVIVNGDDP---------------------------LSRQAQENATLLFNI 1037
Query: 369 HVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMT 548
H+R++L S+ + E RL+ +AF WLL EIE++F QA+A GEMVGA AAQS+GEPATQMT
Sbjct: 1038 HLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMT 1097
[111][TOP]
>UniRef100_UPI00005A0B1B PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide
A isoform 7 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B1B
Length = 1858
Score = 134 bits (336), Expect = 6e-30
Identities = 76/180 (42%), Positives = 110/180 (61%)
Frame = +3
Query: 9 LAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIV 188
L +E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++IF + SDL P K+V
Sbjct: 946 LEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVV 1004
Query: 189 RGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQV 368
GV+ L + ++ D+ LS AQ NATLLF +
Sbjct: 1005 EGVKELSKKLVIVNGDDP---------------------------LSRQAQENATLLFNI 1037
Query: 369 HVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMT 548
H+R++L S+ + E RL+ +AF WLL EIE++F QA+A GEMVGA AAQS+GEPATQMT
Sbjct: 1038 HLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMT 1097
[112][TOP]
>UniRef100_UPI00005A0B19 PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide
A isoform 5 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B19
Length = 1693
Score = 134 bits (336), Expect = 6e-30
Identities = 76/180 (42%), Positives = 110/180 (61%)
Frame = +3
Query: 9 LAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIV 188
L +E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++IF + SDL P K+V
Sbjct: 938 LEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVV 996
Query: 189 RGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQV 368
GV+ L + ++ D+ LS AQ NATLLF +
Sbjct: 997 EGVKELSKKLVIVNGDDP---------------------------LSRQAQENATLLFNI 1029
Query: 369 HVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMT 548
H+R++L S+ + E RL+ +AF WLL EIE++F QA+A GEMVGA AAQS+GEPATQMT
Sbjct: 1030 HLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMT 1089
[113][TOP]
>UniRef100_UPI00005A0B17 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
(RPB1) isoform 3 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B17
Length = 1788
Score = 134 bits (336), Expect = 6e-30
Identities = 76/180 (42%), Positives = 110/180 (61%)
Frame = +3
Query: 9 LAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIV 188
L +E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++IF + SDL P K+V
Sbjct: 952 LEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVV 1010
Query: 189 RGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQV 368
GV+ L + ++ D+ LS AQ NATLLF +
Sbjct: 1011 EGVKELSKKLVIVNGDDP---------------------------LSRQAQENATLLFNI 1043
Query: 369 HVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMT 548
H+R++L S+ + E RL+ +AF WLL EIE++F QA+A GEMVGA AAQS+GEPATQMT
Sbjct: 1044 HLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMT 1103
[114][TOP]
>UniRef100_UPI00005A0B16 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
(RPB1) isoform 2 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B16
Length = 1922
Score = 134 bits (336), Expect = 6e-30
Identities = 76/180 (42%), Positives = 110/180 (61%)
Frame = +3
Query: 9 LAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIV 188
L +E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++IF + SDL P K+V
Sbjct: 952 LEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVV 1010
Query: 189 RGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQV 368
GV+ L + ++ D+ LS AQ NATLLF +
Sbjct: 1011 EGVKELSKKLVIVNGDDP---------------------------LSRQAQENATLLFNI 1043
Query: 369 HVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMT 548
H+R++L S+ + E RL+ +AF WLL EIE++F QA+A GEMVGA AAQS+GEPATQMT
Sbjct: 1044 HLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMT 1103
[115][TOP]
>UniRef100_UPI0001B7A25C UPI0001B7A25C related cluster n=1 Tax=Rattus norvegicus
RepID=UPI0001B7A25C
Length = 1968
Score = 134 bits (336), Expect = 6e-30
Identities = 76/180 (42%), Positives = 110/180 (61%)
Frame = +3
Query: 9 LAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIV 188
L +E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++IF + SDL P K+V
Sbjct: 954 LEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVV 1012
Query: 189 RGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQV 368
GV+ L + ++ D+ LS AQ NATLLF +
Sbjct: 1013 EGVKELSKKLVIVNGDDP---------------------------LSRQAQENATLLFNI 1045
Query: 369 HVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMT 548
H+R++L S+ + E RL+ +AF WLL EIE++F QA+A GEMVGA AAQS+GEPATQMT
Sbjct: 1046 HLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMT 1105
[116][TOP]
>UniRef100_UPI0001B7A25B UPI0001B7A25B related cluster n=1 Tax=Rattus norvegicus
RepID=UPI0001B7A25B
Length = 1932
Score = 134 bits (336), Expect = 6e-30
Identities = 76/180 (42%), Positives = 110/180 (61%)
Frame = +3
Query: 9 LAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIV 188
L +E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++IF + SDL P K+V
Sbjct: 952 LEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVV 1010
Query: 189 RGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQV 368
GV+ L + ++ D+ LS AQ NATLLF +
Sbjct: 1011 EGVKELSKKLVIVNGDDP---------------------------LSRQAQENATLLFNI 1043
Query: 369 HVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMT 548
H+R++L S+ + E RL+ +AF WLL EIE++F QA+A GEMVGA AAQS+GEPATQMT
Sbjct: 1044 HLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMT 1103
[117][TOP]
>UniRef100_UPI0000DA33D8 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
(RPB1) n=1 Tax=Rattus norvegicus RepID=UPI0000DA33D8
Length = 1970
Score = 134 bits (336), Expect = 6e-30
Identities = 76/180 (42%), Positives = 110/180 (61%)
Frame = +3
Query: 9 LAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIV 188
L +E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++IF + SDL P K+V
Sbjct: 952 LEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVV 1010
Query: 189 RGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQV 368
GV+ L + ++ D+ LS AQ NATLLF +
Sbjct: 1011 EGVKELSKKLVIVNGDDP---------------------------LSRQAQENATLLFNI 1043
Query: 369 HVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMT 548
H+R++L S+ + E RL+ +AF WLL EIE++F QA+A GEMVGA AAQS+GEPATQMT
Sbjct: 1044 HLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMT 1103
[118][TOP]
>UniRef100_UPI0001951285 220 kDa DNA-directed RNA polymerase polypeptide A n=1 Tax=Canis lupus
familiaris RepID=UPI0001951285
Length = 1969
Score = 134 bits (336), Expect = 6e-30
Identities = 76/180 (42%), Positives = 110/180 (61%)
Frame = +3
Query: 9 LAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIV 188
L +E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++IF + SDL P K+V
Sbjct: 952 LEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVV 1010
Query: 189 RGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQV 368
GV+ L + ++ D+ LS AQ NATLLF +
Sbjct: 1011 EGVKELSKKLVIVNGDDP---------------------------LSRQAQENATLLFNI 1043
Query: 369 HVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMT 548
H+R++L S+ + E RL+ +AF WLL EIE++F QA+A GEMVGA AAQS+GEPATQMT
Sbjct: 1044 HLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMT 1103
[119][TOP]
>UniRef100_O08847 DNA-directed RNA polymerase n=1 Tax=Mus musculus RepID=O08847_MOUSE
Length = 1966
Score = 134 bits (336), Expect = 6e-30
Identities = 76/180 (42%), Positives = 110/180 (61%)
Frame = +3
Query: 9 LAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIV 188
L +E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++IF + SDL P K+V
Sbjct: 952 LEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVV 1010
Query: 189 RGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQV 368
GV+ L + ++ D+ LS AQ NATLLF +
Sbjct: 1011 EGVKELSKKLVIVNGDDP---------------------------LSRQAQENATLLFNI 1043
Query: 369 HVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMT 548
H+R++L S+ + E RL+ +AF WLL EIE++F QA+A GEMVGA AAQS+GEPATQMT
Sbjct: 1044 HLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMT 1103
[120][TOP]
>UniRef100_Q7Q3C6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Anopheles gambiae
RepID=Q7Q3C6_ANOGA
Length = 1878
Score = 134 bits (336), Expect = 6e-30
Identities = 76/177 (42%), Positives = 105/177 (59%)
Frame = +3
Query: 18 EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 197
E+ QL +DR+ LR ++F G++K+ L N++R+IWN ++IF + + +DLSP K+++GV
Sbjct: 945 EYEQLLRDREALR-QIFPNGDSKVVLPCNLQRMIWNVQKIFHINKRSPTDLSPLKVIQGV 1003
Query: 198 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 377
LL R ++ + LS+ A NATLLFQ VR
Sbjct: 1004 RDLLQRCVIVAGTD---------------------------RLSKQANENATLLFQCLVR 1036
Query: 378 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMT 548
++L +K V E RL +AF WL+ EIE RFQQA GEMVGA AAQS+GEPATQMT
Sbjct: 1037 STLCTKYVAEEFRLNNEAFEWLIGEIETRFQQAQCNPGEMVGALAAQSLGEPATQMT 1093
[121][TOP]
>UniRef100_B3FA45 RNA polymerase II largest subunit (Fragment) n=1 Tax=Bembidion
balli RepID=B3FA45_9CARA
Length = 220
Score = 134 bits (336), Expect = 6e-30
Identities = 77/177 (43%), Positives = 108/177 (61%)
Frame = +3
Query: 9 LAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIV 188
L +EW QL +DR+ LR ++F +GE+K+ L N++R+IWN ++IF + + +DLSP +++
Sbjct: 72 LEREWEQLSRDREALR-QIFPSGESKVVLPCNLQRMIWNVQKIFHINKRSPTDLSPIRVI 130
Query: 189 RGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQV 368
+GV LL + V+ + ED LS+ A NATLLFQ
Sbjct: 131 QGVRDLLQKC-VIVAGED--------------------------RLSKQANENATLLFQC 163
Query: 369 HVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPAT 539
VRA+L +K V E RL+ +A WL+ EIE RFQQA + GEMVGA AAQS+GEPAT
Sbjct: 164 LVRATLCTKCVSEEFRLSTEAXEWLIGEIETRFQQAQSAPGEMVGALAAQSLGEPAT 220
[122][TOP]
>UniRef100_A9QMG8 RNA polymerase 2 (Fragment) n=1 Tax=rhabditoid sp. PDL15
RepID=A9QMG8_9BILA
Length = 587
Score = 134 bits (336), Expect = 6e-30
Identities = 74/177 (41%), Positives = 107/177 (60%)
Frame = +3
Query: 18 EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 197
EW QL++DR LR ++F G++K+ L N++RLIWNA++IF V ++L+P +++ GV
Sbjct: 148 EWXQLEEDRXLLR-KIFPKGDSKVVLPCNLQRLIWNAQKIFHVETRKXTELNPLRVIEGV 206
Query: 198 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 377
L + ++ ++ +S+ AQ NATLL + +R
Sbjct: 207 RDLSKKLVIVXGED---------------------------RISKQAQYNATLLMNILLR 239
Query: 378 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMT 548
++L SK V ++RL +AF WLL EIE RFQQA+A GEMVGA AAQS+GEPATQMT
Sbjct: 240 STLCSKQVAEKYRLNSEAFEWLLGEIETRFQQAIAQPGEMVGALAAQSLGEPATQMT 296
[123][TOP]
>UniRef100_A6NN93 DNA-directed RNA polymerase n=1 Tax=Homo sapiens RepID=A6NN93_HUMAN
Length = 1970
Score = 134 bits (336), Expect = 6e-30
Identities = 76/180 (42%), Positives = 110/180 (61%)
Frame = +3
Query: 9 LAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIV 188
L +E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++IF + SDL P K+V
Sbjct: 952 LEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVV 1010
Query: 189 RGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQV 368
GV+ L + ++ D+ LS AQ NATLLF +
Sbjct: 1011 EGVKELSKKLVIVNGDDP---------------------------LSRQAQENATLLFNI 1043
Query: 369 HVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMT 548
H+R++L S+ + E RL+ +AF WLL EIE++F QA+A GEMVGA AAQS+GEPATQMT
Sbjct: 1044 HLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMT 1103
[124][TOP]
>UniRef100_P08775 DNA-directed RNA polymerase II subunit RPB1 n=1 Tax=Mus musculus
RepID=RPB1_MOUSE
Length = 1970
Score = 134 bits (336), Expect = 6e-30
Identities = 76/180 (42%), Positives = 110/180 (61%)
Frame = +3
Query: 9 LAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIV 188
L +E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++IF + SDL P K+V
Sbjct: 952 LEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVV 1010
Query: 189 RGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQV 368
GV+ L + ++ D+ LS AQ NATLLF +
Sbjct: 1011 EGVKELSKKLVIVNGDDP---------------------------LSRQAQENATLLFNI 1043
Query: 369 HVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMT 548
H+R++L S+ + E RL+ +AF WLL EIE++F QA+A GEMVGA AAQS+GEPATQMT
Sbjct: 1044 HLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMT 1103
[125][TOP]
>UniRef100_P24928 DNA-directed RNA polymerase II subunit RPB1 n=2 Tax=Euarchontoglires
RepID=RPB1_HUMAN
Length = 1970
Score = 134 bits (336), Expect = 6e-30
Identities = 76/180 (42%), Positives = 110/180 (61%)
Frame = +3
Query: 9 LAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIV 188
L +E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++IF + SDL P K+V
Sbjct: 952 LEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVV 1010
Query: 189 RGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQV 368
GV+ L + ++ D+ LS AQ NATLLF +
Sbjct: 1011 EGVKELSKKLVIVNGDDP---------------------------LSRQAQENATLLFNI 1043
Query: 369 HVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMT 548
H+R++L S+ + E RL+ +AF WLL EIE++F QA+A GEMVGA AAQS+GEPATQMT
Sbjct: 1044 HLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMT 1103
[126][TOP]
>UniRef100_UPI00016E658E UPI00016E658E related cluster n=1 Tax=Takifugu rubripes
RepID=UPI00016E658E
Length = 1628
Score = 133 bits (335), Expect = 7e-30
Identities = 74/180 (41%), Positives = 108/180 (60%)
Frame = +3
Query: 9 LAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIV 188
L +E+ ++K+DR+ LR +F TG++K+ L N+ R+IWNA++IF + +DLSP ++V
Sbjct: 950 LEREFEKMKEDREILR-AIFPTGDSKVVLPCNLARMIWNAQKIFRINTRTPTDLSPLRVV 1008
Query: 189 RGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQV 368
G L + ++ D+ LS+ AQ NATLLF +
Sbjct: 1009 EGTHDLSKKLVIVNGDDP---------------------------LSKQAQQNATLLFNI 1041
Query: 369 HVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMT 548
H+R++L SK + E RL+ +AF WLL EIE +F ++A GEMVGA AAQS+GEPATQMT
Sbjct: 1042 HLRSTLCSKRMTEEFRLSTEAFDWLLGEIETKFNHSIAHPGEMVGALAAQSLGEPATQMT 1101
[127][TOP]
>UniRef100_B3FA42 RNA polymerase II largest subunit (Fragment) n=1 Tax=Bembidion
californicum RepID=B3FA42_9CARA
Length = 227
Score = 133 bits (335), Expect = 7e-30
Identities = 76/177 (42%), Positives = 108/177 (61%)
Frame = +3
Query: 9 LAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIV 188
L + W QL ++R+ LR ++F +GE+K+ L N++R+IWN ++IF + + +DLSP +++
Sbjct: 79 LERXWEQLSRBREALR-QIFPSGESKVVLPCNLQRMIWNVQKIFHINKRSPTDLSPIRVI 137
Query: 189 RGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQV 368
+GV LL + V+ + ED LS+ A NATLLFQ
Sbjct: 138 QGVRDLLQKC-VIVAGED--------------------------RLSKQANENATLLFQC 170
Query: 369 HVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPAT 539
VRA+L +K V E RL+ +AF WL+ EIE RFQQA + GEMVGA AAQS+GEPAT
Sbjct: 171 LVRATLCTKCVSEEFRLSTEAFEWLIGEIETRFQQAQSAPGEMVGALAAQSLGEPAT 227
[128][TOP]
>UniRef100_P91819 DNA-directed RNA polymerase (Fragment) n=1 Tax=Zeldia punctata
RepID=P91819_ZELPU
Length = 629
Score = 133 bits (334), Expect = 1e-29
Identities = 79/177 (44%), Positives = 105/177 (59%)
Frame = +3
Query: 18 EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 197
EW QL++DR LR ++F G+AK+ L N++RLIWNA +IF V DL+P ++V GV
Sbjct: 157 EWQQLEEDRRLLR-KIFPKGDAKVHLPCNLKRLIWNAHKIFHVDLKKPVDLNPLRVVEGV 215
Query: 198 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 377
L ++ V+ S ED +S+ AQ NATLL + +R
Sbjct: 216 REL-NKKLVIVSGED--------------------------RISKQAQYNATLLMNILLR 248
Query: 378 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMT 548
++L SK V H+L +AF W+L EIE RF QA+A GEMVGA AAQS+GEPATQMT
Sbjct: 249 STLCSKQVAKVHKLNTEAFEWILGEIETRFNQAIAQPGEMVGALAAQSLGEPATQMT 305
[129][TOP]
>UniRef100_B4YT43 DNA-directed RNA polymerase (Fragment) n=1 Tax=Laccophilus pictus
RepID=B4YT43_9DYTI
Length = 562
Score = 133 bits (334), Expect = 1e-29
Identities = 76/177 (42%), Positives = 106/177 (59%)
Frame = +3
Query: 9 LAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIV 188
L EW QL+KDR+ LR ++F +GE+ + L N++R+IWN ++IF + + +DLSP +++
Sbjct: 414 LELEWDQLQKDREALR-QIFPSGESNVVLPCNLQRMIWNVQKIFHINKRAPTDLSPLRVI 472
Query: 189 RGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQV 368
+GV LL R ++ + LS A NATLLFQ
Sbjct: 473 QGVRELLQRCIIVAGTD---------------------------RLSTLANDNATLLFQC 505
Query: 369 HVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPAT 539
VR++L +K V E+RL+ +AF WL+ EIE RFQQA A GEMVGA AAQS+GEPAT
Sbjct: 506 LVRSTLCTKYVSEEYRLSTEAFEWLIGEIETRFQQAQANPGEMVGALAAQSLGEPAT 562
[130][TOP]
>UniRef100_A9QMP7 RNA polymerase 2 (Fragment) n=1 Tax=Rhabditoides inermis
RepID=A9QMP7_9BILA
Length = 440
Score = 133 bits (334), Expect = 1e-29
Identities = 75/177 (42%), Positives = 105/177 (59%)
Frame = +3
Query: 18 EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 197
EWAQL++DR LR ++F G+AK+ L N++RLIWNA++IF V +DL P +++ GV
Sbjct: 119 EWAQLEEDRRLLR-KIFPKGDAKIVLPCNLQRLIWNAQKIFHVETRKPTDLHPLRVIEGV 177
Query: 198 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 377
+ + ++ ED +S+ AQ NATLL + VR
Sbjct: 178 RDMAKKL-IIVGGED--------------------------RISKQAQYNATLLMNILVR 210
Query: 378 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMT 548
++L SK + ++L +AF WLL E+E RFQQA+A GEMVG AAQS+GEPATQMT
Sbjct: 211 STLCSKKMAEHYKLNSEAFEWLLGEVETRFQQAIAQPGEMVGPLAAQSLGEPATQMT 267
[131][TOP]
>UniRef100_A9QMF5 DNA-directed RNA polymerase (Fragment) n=1 Tax=Rhabditoides inermis
RepID=A9QMF5_9BILA
Length = 630
Score = 133 bits (334), Expect = 1e-29
Identities = 75/177 (42%), Positives = 105/177 (59%)
Frame = +3
Query: 18 EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 197
EWAQL++DR LR ++F G+AK+ L N++RLIWNA++IF V +DL P +++ GV
Sbjct: 156 EWAQLEEDRRLLR-KIFPKGDAKIVLPCNLQRLIWNAQKIFHVETRKPTDLHPLRVIEGV 214
Query: 198 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 377
+ + ++ ED +S+ AQ NATLL + VR
Sbjct: 215 RDMAKKL-IIVGGED--------------------------RISKQAQYNATLLMNILVR 247
Query: 378 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMT 548
++L SK + ++L +AF WLL E+E RFQQA+A GEMVG AAQS+GEPATQMT
Sbjct: 248 STLCSKKMAEHYKLNSEAFEWLLGEVETRFQQAIAQPGEMVGPLAAQSLGEPATQMT 304
[132][TOP]
>UniRef100_Q6E226 DNA-directed RNA polymerase (Fragment) n=1 Tax=Caenorhabditis
plicata RepID=Q6E226_9PELO
Length = 636
Score = 132 bits (333), Expect = 1e-29
Identities = 75/182 (41%), Positives = 108/182 (59%)
Frame = +3
Query: 3 ELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSK 182
E + EWAQL++DR LR ++F G+AK+ L N++RLIWNA++IF V DLSP
Sbjct: 159 EKVESEWAQLEEDRRLLR-KIFPKGDAKIVLPCNLQRLIWNAQKIFKVDTRKPVDLSPLH 217
Query: 183 IVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLF 362
++ GV + + +++ ++D +S AQ NATLL
Sbjct: 218 VIDGVREISSKLIIVSGNDD---------------------------ISRQAQYNATLLM 250
Query: 363 QVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQ 542
+ +R++L SK + + +L +AF WLL E+E+RF QA+A GEMVGA AAQS+GEPATQ
Sbjct: 251 NILLRSTLCSKKLCTTSKLNTEAFDWLLGEVESRFNQAIAQPGEMVGALAAQSLGEPATQ 310
Query: 543 MT 548
MT
Sbjct: 311 MT 312
[133][TOP]
>UniRef100_O01370 DNA-directed RNA polymerase (Fragment) n=1 Tax=Mesorhabditis sp.
RepID=O01370_9BILA
Length = 633
Score = 132 bits (333), Expect = 1e-29
Identities = 73/178 (41%), Positives = 108/178 (60%)
Frame = +3
Query: 15 KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 194
+EW +L+ DR LR ++F G+ K+ L N++RLIWNA++IF V ++LSP +++ G
Sbjct: 159 EEWERLEDDRRLLR-KIFPKGDKKVVLPCNLQRLIWNAQKIFKVETRKPTNLSPLRVIEG 217
Query: 195 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 374
V L + +++ D+ +S+ AQ NATLL + +
Sbjct: 218 VRELSKKLIIVSGDD---------------------------RISQQAQYNATLLMNILL 250
Query: 375 RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMT 548
R++L SK + ++RL ++ F WLL EIE+RFQQA+A GEMVGA AAQS+GEPATQMT
Sbjct: 251 RSTLCSKQMAEKYRLNQEGFEWLLGEIEHRFQQAIAQPGEMVGALAAQSLGEPATQMT 308
[134][TOP]
>UniRef100_A9QMH1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Acrobeles maximus
RepID=A9QMH1_9BILA
Length = 616
Score = 132 bits (333), Expect = 1e-29
Identities = 77/177 (43%), Positives = 105/177 (59%)
Frame = +3
Query: 18 EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 197
EW QL++DR LR ++F GE+K+ L N++RLIWNA++IF V DL+P +++ GV
Sbjct: 164 EWQQLEEDRRLLR-KIFPKGESKVHLPCNLKRLIWNAQKIFHVDLRKTVDLNPVRVIEGV 222
Query: 198 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 377
L + ++ S ED +S+ AQ NATLL + +R
Sbjct: 223 RELSKKL-IIVSGED--------------------------RISKQAQYNATLLMNILLR 255
Query: 378 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMT 548
++L SK V H+L +AF W+L EIE RF QA+A GEMVGA AAQS+GEPATQMT
Sbjct: 256 STLCSKQVAKVHKLNTEAFEWILGEIETRFNQAIAQPGEMVGALAAQSLGEPATQMT 312
[135][TOP]
>UniRef100_A9QMG7 RNA polymerase 2 (Fragment) n=1 Tax=Distolabrellus veechi
RepID=A9QMG7_9BILA
Length = 583
Score = 132 bits (333), Expect = 1e-29
Identities = 74/178 (41%), Positives = 106/178 (59%)
Frame = +3
Query: 15 KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 194
+EW QL++DR LR ++F G+ K+ L N++RLIWNA++IF V S L+P +++ G
Sbjct: 146 EEWQQLEEDRRLLR-KIFPKGDNKVVLPCNLQRLIWNAQKIFKVETRKPSSLNPLRVIEG 204
Query: 195 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 374
V + + ++ D+ +S+ AQ NATLL + V
Sbjct: 205 VREMSKKLIIVCGDD---------------------------RISKHAQYNATLLMNILV 237
Query: 375 RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMT 548
R++L SK + ++RL +AF WLL EIE+RFQQA+ GEMVGA AAQS+GEPATQMT
Sbjct: 238 RSTLCSKQMADKYRLNEEAFEWLLGEIEHRFQQAIVQPGEMVGALAAQSLGEPATQMT 295
[136][TOP]
>UniRef100_A9QMG0 DNA-directed RNA polymerase (Fragment) n=1 Tax=Oscheius tipulae
RepID=A9QMG0_OSCTI
Length = 629
Score = 132 bits (333), Expect = 1e-29
Identities = 76/182 (41%), Positives = 108/182 (59%)
Frame = +3
Query: 3 ELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSK 182
E + EWAQL++DR LR + F G+ K+ L N++RLIWNA++IF V + + L+P
Sbjct: 159 EEIENEWAQLEEDRRLLR-KTFPNGDNKVVLPCNLQRLIWNAQKIFHVETREVTSLNPLA 217
Query: 183 IVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLF 362
++RGV+ L + ++ ED +S AQ NATLL
Sbjct: 218 VIRGVKNLSDKL-IIVGGED--------------------------RISRQAQFNATLLM 250
Query: 363 QVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQ 542
+ +R++L SK + + H+L ++AF WLL EIE RF+ A+A GEMVGA AAQS+GEPATQ
Sbjct: 251 NILLRSTLCSKKMATTHKLNQEAFDWLLGEIETRFKSAIAQPGEMVGALAAQSLGEPATQ 310
Query: 543 MT 548
MT
Sbjct: 311 MT 312
[137][TOP]
>UniRef100_UPI00005A0B1A PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
(RPB1) isoform 6 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B1A
Length = 1767
Score = 132 bits (332), Expect = 2e-29
Identities = 76/182 (41%), Positives = 112/182 (61%), Gaps = 2/182 (1%)
Frame = +3
Query: 9 LAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV--NIERLIWNAKRIFDVRQNDRSDLSPSK 182
L +E+ ++++DR+ LR +F TG++K+P+ + N+ R+IWNA++IF + SDL P K
Sbjct: 938 LEREFERMREDREVLR-VIFPTGDSKVPVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIK 996
Query: 183 IVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLF 362
+V GV+ L + ++ D+ LS AQ NATLLF
Sbjct: 997 VVEGVKELSKKLVIVNGDDP---------------------------LSRQAQENATLLF 1029
Query: 363 QVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQ 542
+H+R++L S+ + E RL+ +AF WLL EIE++F QA+A GEMVGA AAQS+GEPATQ
Sbjct: 1030 NIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQ 1089
Query: 543 MT 548
MT
Sbjct: 1090 MT 1091
[138][TOP]
>UniRef100_A9TK89 DNA-directed RNA polymerase n=1 Tax=Physcomitrella patens subsp.
patens RepID=A9TK89_PHYPA
Length = 1646
Score = 132 bits (332), Expect = 2e-29
Identities = 78/177 (44%), Positives = 104/177 (58%)
Frame = +3
Query: 18 EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 197
E ++L+ DR + E+ TGEA PL VN++RLIWNA++IF V SD+ P +IV V
Sbjct: 938 EVSKLEADRRQMGLEIAPTGEANWPLPVNLKRLIWNAQKIFKVDFRKPSDMHPMEIVEAV 997
Query: 198 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 377
+ L R RV+ D+ ++S AQ NATL F +R
Sbjct: 998 DKLQERLRVVPGDD---------------------------QISMEAQRNATLFFGCLLR 1030
Query: 378 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMT 548
++LASK VL ++RLTR+AF W++ EIE RF +L GEM+G AAQSIGEPATQMT
Sbjct: 1031 STLASKRVLKDYRLTREAFDWVIGEIETRFLMSLVAPGEMIGCVAAQSIGEPATQMT 1087
[139][TOP]
>UniRef100_A8PU11 DNA-directed RNA polymerase n=1 Tax=Brugia malayi RepID=A8PU11_BRUMA
Length = 1943
Score = 132 bits (332), Expect = 2e-29
Identities = 74/177 (41%), Positives = 108/177 (61%)
Frame = +3
Query: 18 EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 197
EW QL++DR LR ++F G+AK+ L N++R+IWNA++IF V +DL+P +++ GV
Sbjct: 1020 EWGQLEEDRRLLR-KIFPKGDAKIVLPCNLQRMIWNAQKIFRVELRKPTDLNPLRVIEGV 1078
Query: 198 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 377
+ L + V+ S ED +S+ AQ NATLL + +R
Sbjct: 1079 KELSKKL-VIVSGED--------------------------RISKQAQYNATLLMNILLR 1111
Query: 378 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMT 548
++L +K + +HRL + F WL+ EIE+RF+QA+ GEMVGA AAQS+GEPATQMT
Sbjct: 1112 STLCAKRMAEKHRLNSEGFEWLIGEIESRFKQAIVQPGEMVGAIAAQSLGEPATQMT 1168
[140][TOP]
>UniRef100_P16356 DNA-directed RNA polymerase II subunit RPB1 n=1 Tax=Caenorhabditis
elegans RepID=RPB1_CAEEL
Length = 1852
Score = 132 bits (332), Expect = 2e-29
Identities = 75/181 (41%), Positives = 111/181 (61%)
Frame = +3
Query: 6 LLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKI 185
L+ EW+QL++DR LR ++F G+AK+ L N++RLIWNA++IF V +LSP +
Sbjct: 941 LVESEWSQLEEDRRLLR-KIFPRGDAKIVLPCNLQRLIWNAQKIFKVDLRKPVNLSPLHV 999
Query: 186 VRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQ 365
+ GV L + +++ ++ E+S+ AQ NATLL
Sbjct: 1000 ISGVRELSKKLIIVSGND---------------------------EISKQAQYNATLLMN 1032
Query: 366 VHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQM 545
+ +R++L +K + ++ +L +AF WLL EIE+RFQQA+A GEMVGA AAQS+GEPATQM
Sbjct: 1033 ILLRSTLCTKNMCTKSKLNSEAFDWLLGEIESRFQQAIAQPGEMVGALAAQSLGEPATQM 1092
Query: 546 T 548
T
Sbjct: 1093 T 1093
[141][TOP]
>UniRef100_UPI0000F2BF13 PREDICTED: similar to RNA polymerase II isoform 2 n=1 Tax=Monodelphis
domestica RepID=UPI0000F2BF13
Length = 1932
Score = 132 bits (331), Expect = 2e-29
Identities = 78/180 (43%), Positives = 111/180 (61%)
Frame = +3
Query: 9 LAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIV 188
L +E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++IF + SDL P K+V
Sbjct: 952 LEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVV 1010
Query: 189 RGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQV 368
GV+ L + V+ + ED LS AQ NATLLF +
Sbjct: 1011 DGVKELSKKL-VIVNGEDP--------------------------LSRQAQENATLLFNI 1043
Query: 369 HVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMT 548
H+R++L S+ + E RL+ +AF WLL EIE++F QA+A GEMVGA AAQS+GEPATQMT
Sbjct: 1044 HLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMT 1103
[142][TOP]
>UniRef100_UPI0000F2BF12 PREDICTED: similar to RNA polymerase II isoform 1 n=1 Tax=Monodelphis
domestica RepID=UPI0000F2BF12
Length = 1970
Score = 132 bits (331), Expect = 2e-29
Identities = 78/180 (43%), Positives = 111/180 (61%)
Frame = +3
Query: 9 LAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIV 188
L +E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++IF + SDL P K+V
Sbjct: 952 LEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVV 1010
Query: 189 RGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQV 368
GV+ L + V+ + ED LS AQ NATLLF +
Sbjct: 1011 DGVKELSKKL-VIVNGEDP--------------------------LSRQAQENATLLFNI 1043
Query: 369 HVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMT 548
H+R++L S+ + E RL+ +AF WLL EIE++F QA+A GEMVGA AAQS+GEPATQMT
Sbjct: 1044 HLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMT 1103
[143][TOP]
>UniRef100_Q6E233 RNA polymerase 2 (Fragment) n=1 Tax=Caenorhabditis remanei
RepID=Q6E233_CAERE
Length = 611
Score = 132 bits (331), Expect = 2e-29
Identities = 74/181 (40%), Positives = 110/181 (60%)
Frame = +3
Query: 6 LLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKI 185
L+ EW+QL++DR LR ++F G+AK+ L N++RLIWNA++IF V +LSP +
Sbjct: 143 LVESEWSQLEEDRRLLR-KIFPRGDAKIVLPCNLQRLIWNAQKIFKVDLRKPVNLSPLHV 201
Query: 186 VRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQ 365
+ GV L + +++ ++ E+S+ AQ NATLL
Sbjct: 202 INGVRELSKKLIIVSGND---------------------------EISKQAQYNATLLMN 234
Query: 366 VHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQM 545
+ +R++L +K + + +L +AF WLL E+E+RFQQA+A GEMVGA AAQS+GEPATQM
Sbjct: 235 ILLRSTLCTKKMCTSAKLNTEAFDWLLGEVESRFQQAIAQPGEMVGALAAQSLGEPATQM 294
Query: 546 T 548
T
Sbjct: 295 T 295
[144][TOP]
>UniRef100_Q6E231 RNA polymerase 2 (Fragment) n=1 Tax=Caenorhabditis brenneri
RepID=Q6E231_CAEBE
Length = 596
Score = 132 bits (331), Expect = 2e-29
Identities = 75/181 (41%), Positives = 109/181 (60%)
Frame = +3
Query: 6 LLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKI 185
L+ EW+QL++DR LR ++F G+AK+ L N++RLIWNA++IF V +LSP +
Sbjct: 135 LVESEWSQLEEDRRLLR-KIFPRGDAKIVLPCNLQRLIWNAQKIFKVDLRKPVNLSPLHV 193
Query: 186 VRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQ 365
+ GV L + +++ ++ E+S+ AQ NATLL
Sbjct: 194 INGVRELSKKLIIVSGND---------------------------EISKQAQYNATLLMN 226
Query: 366 VHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQM 545
+ +R++L +K + + +L +AF WLL EIE RFQQA+A GEMVGA AAQS+GEPATQM
Sbjct: 227 ILLRSTLCTKKMCTSAKLNTEAFDWLLGEIETRFQQAIAQPGEMVGALAAQSLGEPATQM 286
Query: 546 T 548
T
Sbjct: 287 T 287
[145][TOP]
>UniRef100_A9QME7 DNA-directed RNA polymerase (Fragment) n=1 Tax=Pellioditis
mediterranea RepID=A9QME7_9PELO
Length = 618
Score = 132 bits (331), Expect = 2e-29
Identities = 72/180 (40%), Positives = 107/180 (59%)
Frame = +3
Query: 9 LAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIV 188
+ +EW QL+ DR LR ++F TG+AK+ L N++RLIWNA++IF V +DLSP +++
Sbjct: 158 IEEEWHQLEHDRRLLR-KIFPTGDAKIVLPCNLQRLIWNAQKIFHVETRKPTDLSPLRVI 216
Query: 189 RGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQV 368
GV + + ++ ++ +S+ AQ NATLL +
Sbjct: 217 EGVRDMSEKLIIVAGED---------------------------RISKQAQYNATLLMNI 249
Query: 369 HVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMT 548
+R++L SK + ++L +AF WLL E+E RF+QA+A GEMVG AAQS+GEPATQMT
Sbjct: 250 LLRSTLCSKKMAVSYKLNSEAFEWLLGEVETRFKQAIAQPGEMVGPLAAQSLGEPATQMT 309
[146][TOP]
>UniRef100_P35074 DNA-directed RNA polymerase II subunit RPB1 n=1 Tax=Caenorhabditis
briggsae RepID=RPB1_CAEBR
Length = 1853
Score = 132 bits (331), Expect = 2e-29
Identities = 75/181 (41%), Positives = 109/181 (60%)
Frame = +3
Query: 6 LLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKI 185
L+ EW+QL++DR LR ++F G+AK+ L N++RLIWNA++IF V +LSP +
Sbjct: 945 LVESEWSQLEEDRRLLR-KIFPRGDAKIVLPCNLQRLIWNAQKIFKVDLRKPVNLSPLHV 1003
Query: 186 VRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQ 365
+ GV L + +++ ++ E+S+ AQ NATLL
Sbjct: 1004 INGVRELSKKLIIVSGND---------------------------EISKQAQYNATLLMN 1036
Query: 366 VHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQM 545
+ +R++L +K + + +L +AF WLL EIE RFQQA+A GEMVGA AAQS+GEPATQM
Sbjct: 1037 ILLRSTLCTKKMCTSAKLNTEAFDWLLGEIETRFQQAIAQPGEMVGALAAQSLGEPATQM 1096
Query: 546 T 548
T
Sbjct: 1097 T 1097
[147][TOP]
>UniRef100_O35559 DNA-directed RNA polymerase n=1 Tax=Cricetulus griseus
RepID=O35559_CRIGR
Length = 1970
Score = 130 bits (328), Expect = 5e-29
Identities = 75/180 (41%), Positives = 109/180 (60%)
Frame = +3
Query: 9 LAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIV 188
L +E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++IF + SDL K+V
Sbjct: 952 LEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHSIKVV 1010
Query: 189 RGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQV 368
GV+ L + ++ D+ LS AQ NATLLF +
Sbjct: 1011 EGVKELSKKLVIVNGDDP---------------------------LSRQAQENATLLFNI 1043
Query: 369 HVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMT 548
H+R++L S+ + E RL+ +AF WLL EIE++F QA+A GEMVGA AAQS+GEPATQMT
Sbjct: 1044 HLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMT 1103
[148][TOP]
>UniRef100_Q6E227 RNA polymerase 2 (Fragment) n=1 Tax=Caenorhabditis japonica
RepID=Q6E227_CAEJA
Length = 608
Score = 130 bits (328), Expect = 5e-29
Identities = 75/181 (41%), Positives = 108/181 (59%)
Frame = +3
Query: 6 LLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKI 185
L+ EW+QL++DR LR ++F G+AK+ L N++RLIWNA++IF V +LSP +
Sbjct: 143 LVESEWSQLEEDRRLLR-KIFPRGDAKIVLPCNLQRLIWNAQKIFKVDLRKPVNLSPLHV 201
Query: 186 VRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQ 365
+ GV L + ++ ++ E+S+ AQ NATLL
Sbjct: 202 INGVRELSKKLIIVCGND---------------------------EISKQAQYNATLLMN 234
Query: 366 VHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQM 545
+ +R++L +K + + +L +AF WLL EIE RFQQA+A GEMVGA AAQS+GEPATQM
Sbjct: 235 ILLRSTLCTKKMCTTAKLNTEAFDWLLGEIETRFQQAIAQPGEMVGALAAQSLGEPATQM 294
Query: 546 T 548
T
Sbjct: 295 T 295
[149][TOP]
>UniRef100_A9QMF1 RNA polymerase 2 (Fragment) n=1 Tax=Pelodera punctata
RepID=A9QMF1_9PELO
Length = 605
Score = 130 bits (328), Expect = 5e-29
Identities = 74/177 (41%), Positives = 104/177 (58%)
Frame = +3
Query: 18 EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 197
EW QL++DR LR ++F G+ K+ L N++RLIWNA++IF V S L+P K+V GV
Sbjct: 141 EWQQLEEDRRLLR-KIFPKGDHKVVLPCNLQRLIWNAQKIFKVETRKASSLNPLKVVSGV 199
Query: 198 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 377
L + ++ ++ +S+ AQ NATLL + +R
Sbjct: 200 RELSKKLIIVCGED---------------------------RISKQAQYNATLLMNILIR 232
Query: 378 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMT 548
++L SK + ++RL + F WLL EIE+RF QA+A GEMVGA AAQS+GEPATQMT
Sbjct: 233 STLCSKQMAEKYRLNEEGFEWLLGEIEHRFNQAVAQPGEMVGALAAQSLGEPATQMT 289
[150][TOP]
>UniRef100_UPI0000E48673 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
(RPB1) isoform 1 n=1 Tax=Strongylocentrotus purpuratus
RepID=UPI0000E48673
Length = 1880
Score = 130 bits (327), Expect = 6e-29
Identities = 79/180 (43%), Positives = 108/180 (60%)
Frame = +3
Query: 9 LAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIV 188
L KE+ QLK+DR+ LR ++F GE+K+ L N++R+IWNA++IF + S+L PS ++
Sbjct: 946 LEKEYDQLKEDREVLR-KIFPKGESKVALPCNLDRMIWNAQQIFHINTRLPSELHPSFVL 1004
Query: 189 RGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQV 368
GV L + V+ EDA +S AQ NAT L
Sbjct: 1005 EGVRDLKKKL-VIVKGEDA--------------------------ISRQAQENATYLMNC 1037
Query: 369 HVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMT 548
+R++L+S V EH+L+ ++F WLL EIE RF Q+LA AGEMVGA AAQS+GEPATQMT
Sbjct: 1038 LIRSTLSSTRVAQEHKLSPESFEWLLGEIETRFNQSLAMAGEMVGALAAQSLGEPATQMT 1097
[151][TOP]
>UniRef100_UPI0000E48672 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
(RPB1) isoform 2 n=1 Tax=Strongylocentrotus purpuratus
RepID=UPI0000E48672
Length = 1913
Score = 130 bits (327), Expect = 6e-29
Identities = 79/180 (43%), Positives = 108/180 (60%)
Frame = +3
Query: 9 LAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIV 188
L KE+ QLK+DR+ LR ++F GE+K+ L N++R+IWNA++IF + S+L PS ++
Sbjct: 952 LEKEYDQLKEDREVLR-KIFPKGESKVALPCNLDRMIWNAQQIFHINTRLPSELHPSFVL 1010
Query: 189 RGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQV 368
GV L + V+ EDA +S AQ NAT L
Sbjct: 1011 EGVRDLKKKL-VIVKGEDA--------------------------ISRQAQENATYLMNC 1043
Query: 369 HVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMT 548
+R++L+S V EH+L+ ++F WLL EIE RF Q+LA AGEMVGA AAQS+GEPATQMT
Sbjct: 1044 LIRSTLSSTRVAQEHKLSPESFEWLLGEIETRFNQSLAMAGEMVGALAAQSLGEPATQMT 1103
[152][TOP]
>UniRef100_UPI0000E48671 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
(RPB1) isoform 3 n=1 Tax=Strongylocentrotus purpuratus
RepID=UPI0000E48671
Length = 1921
Score = 130 bits (327), Expect = 6e-29
Identities = 79/180 (43%), Positives = 108/180 (60%)
Frame = +3
Query: 9 LAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIV 188
L KE+ QLK+DR+ LR ++F GE+K+ L N++R+IWNA++IF + S+L PS ++
Sbjct: 952 LEKEYDQLKEDREVLR-KIFPKGESKVALPCNLDRMIWNAQQIFHINTRLPSELHPSFVL 1010
Query: 189 RGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQV 368
GV L + V+ EDA +S AQ NAT L
Sbjct: 1011 EGVRDLKKKL-VIVKGEDA--------------------------ISRQAQENATYLMNC 1043
Query: 369 HVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMT 548
+R++L+S V EH+L+ ++F WLL EIE RF Q+LA AGEMVGA AAQS+GEPATQMT
Sbjct: 1044 LIRSTLSSTRVAQEHKLSPESFEWLLGEIETRFNQSLAMAGEMVGALAAQSLGEPATQMT 1103
[153][TOP]
>UniRef100_A9U396 DNA-directed RNA polymerase n=1 Tax=Physcomitrella patens subsp.
patens RepID=A9U396_PHYPA
Length = 1742
Score = 130 bits (327), Expect = 6e-29
Identities = 76/177 (42%), Positives = 104/177 (58%)
Frame = +3
Query: 18 EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 197
E ++L+ DR + E+ TGE+ PL VN++RLIWNA++IF V SD+ P +IV V
Sbjct: 953 EVSKLEADRRQMGLEIAPTGESNWPLPVNLKRLIWNAQKIFKVDLRKSSDMHPMEIVEAV 1012
Query: 198 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 377
E L R RV+ ++ ++S AQ NATL F +R
Sbjct: 1013 ENLQERLRVVPGND---------------------------QISMEAQRNATLFFGCLLR 1045
Query: 378 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMT 548
++LASK VL ++RLTR+AF W++ E+E RF +L GEM+G AAQSIGEPATQMT
Sbjct: 1046 STLASKRVLKDYRLTREAFEWVIGEVETRFLMSLVAPGEMIGCVAAQSIGEPATQMT 1102
[154][TOP]
>UniRef100_Q6E225 DNA-directed RNA polymerase (Fragment) n=1 Tax=Caenorhabditis sp.
SB341 RepID=Q6E225_9PELO
Length = 622
Score = 130 bits (326), Expect = 8e-29
Identities = 73/182 (40%), Positives = 109/182 (59%)
Frame = +3
Query: 3 ELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSK 182
E + EW QL++DR LR ++F TG+AK+ L N++RLIWNA++IF V ++LSP
Sbjct: 159 EKVEAEWNQLEEDRRLLR-KIFPTGDAKVVLPCNLQRLIWNAQKIFKVDLRKPTNLSPLH 217
Query: 183 IVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLF 362
++ GV + + +++ +D +S+ AQ NATLL
Sbjct: 218 VIEGVREVSKKLIIVSGSDD---------------------------ISKQAQYNATLLM 250
Query: 363 QVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQ 542
+ +R++L SK + + +L +AF WLL E+E+RF Q++A GEMVGA AAQS+GEPATQ
Sbjct: 251 NILLRSTLCSKKMATSAKLNTEAFDWLLGEVESRFMQSIAQPGEMVGALAAQSLGEPATQ 310
Query: 543 MT 548
MT
Sbjct: 311 MT 312
[155][TOP]
>UniRef100_A9QMQ9 DNA-directed RNA polymerase (Fragment) n=1 Tax=Caenorhabditis sp.
JU727 RepID=A9QMQ9_9PELO
Length = 620
Score = 130 bits (326), Expect = 8e-29
Identities = 74/181 (40%), Positives = 108/181 (59%)
Frame = +3
Query: 6 LLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKI 185
L+ EW+QL++DR LR ++F G+AK+ L N++RLIWNA++IF V +LSP +
Sbjct: 160 LVESEWSQLEEDRRLLR-KIFPRGDAKIVLPCNLQRLIWNAQKIFKVDLRKPVNLSPLHV 218
Query: 186 VRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQ 365
+ GV L + +++ ++ E+S+ AQ NATLL
Sbjct: 219 INGVRELSKKLIIVSGND---------------------------EISKQAQYNATLLMN 251
Query: 366 VHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQM 545
+ +R++L +K + + +L +AF WLL EIE RFQ A+A GEMVGA AAQS+GEPATQM
Sbjct: 252 ILLRSTLCTKKMCTSAKLNTEAFDWLLGEIETRFQSAIAQPGEMVGALAAQSLGEPATQM 311
Query: 546 T 548
T
Sbjct: 312 T 312
[156][TOP]
>UniRef100_Q6E232 RNA polymersae 2 (Fragment) n=1 Tax=Caenorhabditis sp. PS1010
RepID=Q6E232_9PELO
Length = 601
Score = 129 bits (325), Expect = 1e-28
Identities = 74/182 (40%), Positives = 107/182 (58%)
Frame = +3
Query: 3 ELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSK 182
E + EWAQL +DR LR ++F G+AK+ L N++RL+WNA++IF V +LSP
Sbjct: 142 EKIESEWAQLSEDRRLLR-KIFPKGDAKIVLPCNLQRLMWNAQKIFKVDTRKPVNLSPLH 200
Query: 183 IVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLF 362
++ GV L + ++ ++D +S+ AQ NATLL
Sbjct: 201 VIDGVRELSKKLIIVCGNDD---------------------------ISKQAQYNATLLM 233
Query: 363 QVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQ 542
+ +R++L +K + + +L +AF WLL EIE+RF QA+A GEMVGA AAQS+GEPATQ
Sbjct: 234 NILLRSTLCTKKMCTSSKLNTEAFDWLLGEIESRFMQAIAQPGEMVGALAAQSLGEPATQ 293
Query: 543 MT 548
MT
Sbjct: 294 MT 295
[157][TOP]
>UniRef100_O01376 DNA-directed RNA polymerase (Fragment) n=1 Tax=unidentified
nematode RepID=O01376_9BILA
Length = 633
Score = 129 bits (325), Expect = 1e-28
Identities = 74/182 (40%), Positives = 107/182 (58%)
Frame = +3
Query: 3 ELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSK 182
E + EWAQL +DR LR ++F G+AK+ L N++RL+WNA++IF V +LSP
Sbjct: 155 EKIESEWAQLSEDRRLLR-KIFPKGDAKIVLPCNLQRLMWNAQKIFKVDTRKPVNLSPLH 213
Query: 183 IVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLF 362
++ GV L + ++ ++D +S+ AQ NATLL
Sbjct: 214 VIDGVRELSKKLIIVCGNDD---------------------------ISKQAQYNATLLM 246
Query: 363 QVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQ 542
+ +R++L +K + + +L +AF WLL EIE+RF QA+A GEMVGA AAQS+GEPATQ
Sbjct: 247 NILLRSALCTKKMCTSSKLNTEAFDWLLGEIESRFMQAIAQPGEMVGALAAQSLGEPATQ 306
Query: 543 MT 548
MT
Sbjct: 307 MT 308
[158][TOP]
>UniRef100_C3ZES3 DNA-directed RNA polymerase n=1 Tax=Branchiostoma floridae
RepID=C3ZES3_BRAFL
Length = 1934
Score = 129 bits (325), Expect = 1e-28
Identities = 76/177 (42%), Positives = 103/177 (58%)
Frame = +3
Query: 18 EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 197
E+ QL+ DRD LR V +TG+AK+ L N+ R+IWNA++IF V +DL P K+V GV
Sbjct: 951 EFEQLRVDRDVLR-SVNQTGDAKVALPCNLARIIWNAQKIFHVNTRAPTDLHPIKVVEGV 1009
Query: 198 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 377
L + ++ D+ + A Q NAT+LF +R
Sbjct: 1010 RDLSRKLVIVKGDDPISIQA---------------------------QANATILFNTLLR 1042
Query: 378 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMT 548
++L ++ VL E RL+ +AF WLL EIE+RF QA+ GEMVGA AAQS+GEPATQMT
Sbjct: 1043 STLCTRRVLEEFRLSTEAFDWLLGEIESRFNQAIVQPGEMVGALAAQSLGEPATQMT 1099
[159][TOP]
>UniRef100_A9QMF3 DNA-directed RNA polymerase (Fragment) n=1 Tax=Rhabditoides regina
RepID=A9QMF3_9BILA
Length = 626
Score = 129 bits (325), Expect = 1e-28
Identities = 71/177 (40%), Positives = 105/177 (59%)
Frame = +3
Query: 18 EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 197
EW QL++DR LR ++F G++K+ L N++RLIWNA++IF V + L+P +++ GV
Sbjct: 160 EWLQLEEDRRLLR-KIFPKGDSKVVLPCNLQRLIWNAQKIFKVETRKVTALNPLRVIEGV 218
Query: 198 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 377
+ + +++ D+ +S+ AQ NATLL + +R
Sbjct: 219 RNVSKKLVIVSGDD---------------------------RISKQAQYNATLLMNILIR 251
Query: 378 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMT 548
++L SK + +H+L + F WLL EIE RFQ A+A GEMVGA AAQS+GEPATQMT
Sbjct: 252 STLCSKQMAEKHKLNEEGFEWLLGEIETRFQLAIAQPGEMVGALAAQSLGEPATQMT 308
[160][TOP]
>UniRef100_UPI000186501C hypothetical protein BRAFLDRAFT_115025 n=1 Tax=Branchiostoma floridae
RepID=UPI000186501C
Length = 1956
Score = 129 bits (324), Expect = 1e-28
Identities = 76/177 (42%), Positives = 103/177 (58%)
Frame = +3
Query: 18 EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 197
E+ QL+ DRD LR V +TG+AK+ L N+ R+IWNA++IF V +DL P K+V GV
Sbjct: 951 EFEQLRVDRDVLR-SVNQTGDAKVALPCNLARIIWNAQKIFHVNTRAPTDLHPIKVVEGV 1009
Query: 198 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 377
L + ++ D+ + A Q NAT+LF +R
Sbjct: 1010 RDLSKKLVIVKGDDPISIQA---------------------------QANATILFNTLLR 1042
Query: 378 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMT 548
++L ++ VL E RL+ +AF WLL EIE+RF QA+ GEMVGA AAQS+GEPATQMT
Sbjct: 1043 STLCTRRVLEEFRLSTEAFDWLLGEIESRFNQAIVQPGEMVGALAAQSLGEPATQMT 1099
[161][TOP]
>UniRef100_B9SXC0 DNA-directed RNA polymerase n=1 Tax=Ricinus communis
RepID=B9SXC0_RICCO
Length = 1855
Score = 129 bits (324), Expect = 1e-28
Identities = 75/177 (42%), Positives = 103/177 (58%)
Frame = +3
Query: 18 EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 197
E +L+ DR L E+ TG++ PL VN+ RLIWNA++ F V + SD+ P + V V
Sbjct: 950 EVQKLEADRYQLGTEIATTGDSSWPLPVNLRRLIWNAQKTFKVDKRRPSDIHPMEAVEAV 1009
Query: 198 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 377
+ L R +V+ D+ V+A Q NATL F + +R
Sbjct: 1010 DKLQERLKVVPGDDPLSVEA---------------------------QKNATLFFGILLR 1042
Query: 378 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMT 548
++LASK VL ++RLTR+AF W++ EIE+RF Q+L GEM+G AAQSIGEPATQMT
Sbjct: 1043 STLASKRVLEDYRLTREAFDWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMT 1099
[162][TOP]
>UniRef100_Q99368 DNA-directed RNA polymerase (Fragment) n=1 Tax=Glycine max
RepID=Q99368_SOYBN
Length = 977
Score = 129 bits (323), Expect = 2e-28
Identities = 77/177 (43%), Positives = 105/177 (59%)
Frame = +3
Query: 18 EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 197
E +L+ DR L E+ G+ LPL VN++RLIWNA++ F V SD+ P +IV +
Sbjct: 142 EVQKLEADRHQLAIEIASNGDNSLPLPVNLKRLIWNAQKTFKVDFRRPSDMHPMEIVEAI 201
Query: 198 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 377
+ L R +V+ EDA LS+ AQ NATLLF + +R
Sbjct: 202 DKLQERLKVVPG-EDA--------------------------LSQEAQKNATLLFNILLR 234
Query: 378 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMT 548
++ ASK VL E+RL+R++F W++ EIE+RF Q+L GEM+G AAQSIGEPATQMT
Sbjct: 235 STFASKRVLEEYRLSRESFEWVVGEIESRFLQSLVVPGEMIGVVAAQSIGEPATQMT 291
[163][TOP]
>UniRef100_A9QMF8 DNA-directed RNA polymerase (Fragment) n=1 Tax=Rhabditis sp. SB347
RepID=A9QMF8_9BILA
Length = 621
Score = 129 bits (323), Expect = 2e-28
Identities = 73/177 (41%), Positives = 105/177 (59%)
Frame = +3
Query: 18 EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 197
EW QL++DR LR ++F TG+AK+ L N++RLIWNA++IF V +DL+P +++ GV
Sbjct: 164 EWGQLEEDRRLLR-KIFPTGDAKIVLPCNLQRLIWNAQKIFHVETRKPTDLNPIRVIEGV 222
Query: 198 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 377
L + ++ S ED +S+ AQ NATLL + +R
Sbjct: 223 RELSSKL-IIVSGED--------------------------RISKQAQYNATLLMNILIR 255
Query: 378 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMT 548
++L SK + S ++L +AF WLL E+E RF+QA+A GA AAQS+GEPATQMT
Sbjct: 256 STLCSKKMASTYKLNSEAFEWLLGEVETRFKQAIAXXXXXXGALAAQSLGEPATQMT 312
[164][TOP]
>UniRef100_UPI0000E12351 Os05g0151000 n=1 Tax=Oryza sativa Japonica Group RepID=UPI0000E12351
Length = 2085
Score = 128 bits (321), Expect = 3e-28
Identities = 72/177 (40%), Positives = 103/177 (58%)
Frame = +3
Query: 18 EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 197
E +L+ DR L E+ TG+ P+ VN++RLIWNA++ F + SD+ P +IV +
Sbjct: 951 EVQKLEADRFQLGTEIATTGDNTWPMPVNLKRLIWNAQKTFKIDLRRPSDMHPMEIVDAI 1010
Query: 198 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 377
+ L R +V+ D+D ++A Q NATL F + +R
Sbjct: 1011 DKLQERLKVVPGDDDISIEA---------------------------QKNATLFFNILLR 1043
Query: 378 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMT 548
++ ASK VL E+RLT++AF W++ EIE+RF Q+L GEM+G AAQSIGEPATQMT
Sbjct: 1044 STFASKRVLKEYRLTKEAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMT 1100
[165][TOP]
>UniRef100_Q5WMZ9 DNA-directed RNA polymerase n=1 Tax=Oryza sativa Japonica Group
RepID=Q5WMZ9_ORYSJ
Length = 1741
Score = 128 bits (321), Expect = 3e-28
Identities = 72/177 (40%), Positives = 103/177 (58%)
Frame = +3
Query: 18 EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 197
E +L+ DR L E+ TG+ P+ VN++RLIWNA++ F + SD+ P +IV +
Sbjct: 898 EVQKLEADRFQLGTEIATTGDNTWPMPVNLKRLIWNAQKTFKIDLRRPSDMHPMEIVDAI 957
Query: 198 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 377
+ L R +V+ D+D ++A Q NATL F + +R
Sbjct: 958 DKLQERLKVVPGDDDISIEA---------------------------QKNATLFFNILLR 990
Query: 378 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMT 548
++ ASK VL E+RLT++AF W++ EIE+RF Q+L GEM+G AAQSIGEPATQMT
Sbjct: 991 STFASKRVLKEYRLTKEAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMT 1047
[166][TOP]
>UniRef100_Q0DKN9 DNA-directed RNA polymerase n=1 Tax=Oryza sativa Japonica Group
RepID=Q0DKN9_ORYSJ
Length = 1834
Score = 128 bits (321), Expect = 3e-28
Identities = 72/177 (40%), Positives = 103/177 (58%)
Frame = +3
Query: 18 EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 197
E +L+ DR L E+ TG+ P+ VN++RLIWNA++ F + SD+ P +IV +
Sbjct: 951 EVQKLEADRFQLGTEIATTGDNTWPMPVNLKRLIWNAQKTFKIDLRRPSDMHPMEIVDAI 1010
Query: 198 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 377
+ L R +V+ D+D ++A Q NATL F + +R
Sbjct: 1011 DKLQERLKVVPGDDDISIEA---------------------------QKNATLFFNILLR 1043
Query: 378 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMT 548
++ ASK VL E+RLT++AF W++ EIE+RF Q+L GEM+G AAQSIGEPATQMT
Sbjct: 1044 STFASKRVLKEYRLTKEAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMT 1100
[167][TOP]
>UniRef100_A9QMG6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Teratorhabditis
palmarum RepID=A9QMG6_9BILA
Length = 633
Score = 128 bits (321), Expect = 3e-28
Identities = 74/178 (41%), Positives = 105/178 (58%)
Frame = +3
Query: 15 KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 194
+EW QL++DR LR ++F G+ K+ L N++RLIWNA++IF + +DLSP +++ G
Sbjct: 163 EEWQQLEEDRRLLR-KIFPKGDNKVVLPCNLQRLIWNAQKIFKIETRKVTDLSPVRVIEG 221
Query: 195 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 374
+ L + V+ S ED +S+ AQ NATLL + +
Sbjct: 222 IRELSKKL-VIVSGED--------------------------RISKQAQYNATLLMNILI 254
Query: 375 RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMT 548
R++L SK V S H+L +AF WLL EIE+RF+QA+A GA AAQS+GEPATQMT
Sbjct: 255 RSTLCSKRVASMHKLNNEAFDWLLGEIEHRFKQAIAXXXXXXGALAAQSLGEPATQMT 312
[168][TOP]
>UniRef100_A8Q5I6 DNA-directed RNA polymerase n=1 Tax=Malassezia globosa CBS 7966
RepID=A8Q5I6_MALGO
Length = 1607
Score = 128 bits (321), Expect = 3e-28
Identities = 76/182 (41%), Positives = 106/182 (58%)
Frame = +3
Query: 3 ELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSK 182
+LL E+ QL+ DR LR EVF+T L +NI RL+ NA++IF + SDLSP +
Sbjct: 731 QLLEGEFEQLEADRKTLRTEVFQTDRVDTYLPLNIARLVLNAQQIFHIDPRKPSDLSPFE 790
Query: 183 IVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLF 362
IV G++ +L+ V+ D+ ++S Q NATLLF
Sbjct: 791 IVDGLKRVLNNLLVVRGDD---------------------------KISRVMQENATLLF 823
Query: 363 QVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQ 542
++H+R+ L SK V+ H LTR+A+ W+L EIE +F +++A GEM G AAQSIGEPATQ
Sbjct: 824 KIHLRSFLCSKQVIEVHHLTREAWEWVLGEIEGQFARSVAQPGEMCGTLAAQSIGEPATQ 883
Query: 543 MT 548
MT
Sbjct: 884 MT 885
[169][TOP]
>UniRef100_UPI0001985649 PREDICTED: similar to NRPB1 (RNA POLYMERASE II LARGE SUBUNIT); DNA
binding / DNA-directed RNA polymerase n=1 Tax=Vitis
vinifera RepID=UPI0001985649
Length = 1848
Score = 127 bits (320), Expect = 4e-28
Identities = 77/177 (43%), Positives = 103/177 (58%)
Frame = +3
Query: 18 EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 197
E +L+ DR L E+ TG+ P+ VN++RLIWNA++ F V SD+ P +IV V
Sbjct: 950 EVQKLEADRFQLGTEIATTGDNSWPMPVNLKRLIWNAQKTFKVDLRRPSDMHPMEIVEAV 1009
Query: 198 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 377
+ L R +V+ D D I+ E AQ NATL F + +R
Sbjct: 1010 DKLQERLKVVPGD-----DLISME----------------------AQKNATLFFNILLR 1042
Query: 378 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMT 548
++ ASK VL E+RLTR+AF W++ EIE+RF Q+L GEM+G AAQSIGEPATQMT
Sbjct: 1043 STFASKRVLKEYRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMT 1099
[170][TOP]
>UniRef100_O04144 DNA-directed RNA polymerase (Fragment) n=1 Tax=Spirogyra sp.
RepID=O04144_9VIRI
Length = 613
Score = 127 bits (320), Expect = 4e-28
Identities = 75/182 (41%), Positives = 107/182 (58%)
Frame = +3
Query: 3 ELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSK 182
+++ E QL++DR L E+ TG++ PL VNI+RLIWNA++IF + SD++P
Sbjct: 455 QVMDAEVLQLEQDRRTLGLEIAPTGDSSWPLPVNIKRLIWNAQKIFKIDLRKPSDMNPMD 514
Query: 183 IVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLF 362
+V G++ L R +V+ D D I+RE AQ NATL F
Sbjct: 515 VVDGMDKLQERLKVVVGD-----DHISRE----------------------AQKNATLFF 547
Query: 363 QVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQ 542
+R++++SK VL ++RL +AF W++ EIE RF Q+ GEM+G AAQSIGEPATQ
Sbjct: 548 NCLLRSTMSSKQVLKDYRLNMEAFQWVIGEIEARFLQSQVAPGEMIGCVAAQSIGEPATQ 607
Query: 543 MT 548
MT
Sbjct: 608 MT 609
[171][TOP]
>UniRef100_A7NVN7 DNA-directed RNA polymerase n=1 Tax=Vitis vinifera
RepID=A7NVN7_VITVI
Length = 1010
Score = 127 bits (320), Expect = 4e-28
Identities = 77/177 (43%), Positives = 103/177 (58%)
Frame = +3
Query: 18 EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 197
E +L+ DR L E+ TG+ P+ VN++RLIWNA++ F V SD+ P +IV V
Sbjct: 187 EVQKLEADRFQLGTEIATTGDNSWPMPVNLKRLIWNAQKTFKVDLRRPSDMHPMEIVEAV 246
Query: 198 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 377
+ L R +V+ D D I+ E AQ NATL F + +R
Sbjct: 247 DKLQERLKVVPGD-----DLISME----------------------AQKNATLFFNILLR 279
Query: 378 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMT 548
++ ASK VL E+RLTR+AF W++ EIE+RF Q+L GEM+G AAQSIGEPATQMT
Sbjct: 280 STFASKRVLKEYRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMT 336
[172][TOP]
>UniRef100_Q2N1B5 DNA-directed RNA polymerase II largest subunit (Fragment) n=1
Tax=Platynereis dumerilii RepID=Q2N1B5_PLADU
Length = 248
Score = 127 bits (320), Expect = 4e-28
Identities = 69/182 (37%), Positives = 103/182 (56%)
Frame = +3
Query: 3 ELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSK 182
+ L EW QL DR+ LR +F TG+AK+ L N+ RLIWNA++IF + +DL P K
Sbjct: 92 QTLDHEWEQLMADRERLRG-IFPTGDAKIVLPCNLNRLIWNAQKIFRINIRKPTDLHPVK 150
Query: 183 IVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLF 362
+V G+ L + ++ ++ +DA +NAT+L
Sbjct: 151 VVEGIRELSKKFLIVKGEDKLSIDA---------------------------NINATMLM 183
Query: 363 QVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQ 542
+ +R+ L ++ ++ + RL+ +AF WLL E+E+RF QA+ GEMVG AAQS+GEPATQ
Sbjct: 184 NILIRSRLCARTIIEDDRLSSEAFEWLLGEVESRFNQAMVTPGEMVGPLAAQSLGEPATQ 243
Query: 543 MT 548
MT
Sbjct: 244 MT 245
[173][TOP]
>UniRef100_Q6JTX1 RNA polymerase II largest subunit (Fragment) n=1 Tax=Isohypsibius
elegans RepID=Q6JTX1_9BILA
Length = 304
Score = 127 bits (319), Expect = 5e-28
Identities = 70/182 (38%), Positives = 109/182 (59%)
Frame = +3
Query: 3 ELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSK 182
+ L +E+ Q+K+DR+ +R ++F TG++++ L N++R++WNA++IF ++ +DL P +
Sbjct: 81 QALEQEFEQMKRDREIIR-KIFPTGDSRVVLPCNLQRMVWNAQKIFHIKGRGTTDLHPVR 139
Query: 183 IVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLF 362
+V G+ L+ + V+ ED LS AQ NAT+L
Sbjct: 140 VVEGLNELMKKL-VIVKGED--------------------------RLSREAQENATILM 172
Query: 363 QVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQ 542
+R++L SK + E+ L +AF WLL EIE+RF Q++ GEMVGA AAQS+GEPATQ
Sbjct: 173 NTMLRSTLCSKRMAEEYHLNTEAFEWLLGEIESRFAQSMVQPGEMVGALAAQSLGEPATQ 232
Query: 543 MT 548
MT
Sbjct: 233 MT 234
[174][TOP]
>UniRef100_Q6E223 RNA polymerase 2 (Fragment) n=1 Tax=Caenorhabditis sp. DF5070
RepID=Q6E223_9PELO
Length = 606
Score = 127 bits (319), Expect = 5e-28
Identities = 72/182 (39%), Positives = 106/182 (58%)
Frame = +3
Query: 3 ELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSK 182
E + EW QL++DR LR ++F G+AK+ L N++RL+WNA++IF V +LSP
Sbjct: 142 EKVESEWTQLEEDRRLLR-KIFPKGDAKIVLPCNLQRLMWNAQKIFKVDMRKPVNLSPLH 200
Query: 183 IVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLF 362
++ GV L + ++ +D +S+ AQ NATLL
Sbjct: 201 VIDGVRELSKKLVIVGGSDD---------------------------ISKQAQYNATLLM 233
Query: 363 QVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQ 542
+ +R++L +K + + +L +AF WLL E+E+RF QA+A GEMVGA AAQS+GEPATQ
Sbjct: 234 NILLRSTLCTKKLCTSSKLNTEAFDWLLGEVESRFMQAIAQPGEMVGALAAQSLGEPATQ 293
Query: 543 MT 548
MT
Sbjct: 294 MT 295
[175][TOP]
>UniRef100_A1YIB1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Phragmidium sp. MB
RepID=A1YIB1_9BASI
Length = 1013
Score = 127 bits (319), Expect = 5e-28
Identities = 77/178 (43%), Positives = 100/178 (56%)
Frame = +3
Query: 6 LLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKI 185
+L KEW QL KDR LR +F G + PL VNI R+I NA++IF + SDL P I
Sbjct: 863 VLDKEWEQLIKDRKMLREFIFTDGNGRKPLPVNIRRIIQNAQQIFHIDFRKPSDLPPPDI 922
Query: 186 VRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQ 365
++ V L +R V+ D+ LS AQ NATLLF+
Sbjct: 923 IQMVNDLCNRLIVVRGDD---------------------------ALSRAAQXNATLLFR 955
Query: 366 VHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPAT 539
+ +R++ A++ VL E L+R+AF W+L EIE RF Q+LA GEM G AAQSIGEPAT
Sbjct: 956 ILLRSNFATRRVLEEFHLSREAFVWVLGEIEARFNQSLAAPGEMCGTLAAQSIGEPAT 1013
[176][TOP]
>UniRef100_B6JYP8 DNA-directed RNA polymerase n=1 Tax=Schizosaccharomyces japonicus
yFS275 RepID=B6JYP8_SCHJY
Length = 1748
Score = 126 bits (317), Expect = 9e-28
Identities = 77/182 (42%), Positives = 102/182 (56%)
Frame = +3
Query: 3 ELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSK 182
ELL +E++QL DR+ R +F GEA+ P VN+ R+I N+ +IF + +DL PS
Sbjct: 929 ELLDEEYSQLLTDRELCRGFIFPNGEARWPQPVNVHRIIQNSVQIFHLDSKKPTDLLPSD 988
Query: 183 IVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLF 362
I+ GV L+ + V D D KE+ E NATLLF
Sbjct: 989 IIYGVRNLISKLSVFRGD-----------------------DRITKEIQE----NATLLF 1021
Query: 363 QVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQ 542
Q+ +R+ LA+K V+ E+ L + AF W++ EIE RFQQ GEMVG AAQSIGEPATQ
Sbjct: 1022 QILLRSKLATKRVVMEYHLNKIAFEWIIGEIEARFQQCQVNPGEMVGTLAAQSIGEPATQ 1081
Query: 543 MT 548
MT
Sbjct: 1082 MT 1083
[177][TOP]
>UniRef100_C5YGY9 DNA-directed RNA polymerase n=1 Tax=Sorghum bicolor
RepID=C5YGY9_SORBI
Length = 1857
Score = 126 bits (316), Expect = 1e-27
Identities = 72/177 (40%), Positives = 102/177 (57%)
Frame = +3
Query: 18 EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 197
E +L+ DR L E+ TG+ P+ VN++RLIWNA++ F + SD+ P +IV V
Sbjct: 949 EVQKLEADRYQLGTEIATTGDNSWPMPVNLKRLIWNAQKTFRIDFRRPSDMHPMEIVEAV 1008
Query: 198 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 377
+ L R +V+ D+ ++A Q NATL F + +R
Sbjct: 1009 DKLQERLKVVPGDDPMSIEA---------------------------QKNATLFFNILLR 1041
Query: 378 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMT 548
++ ASK VL E+RLT++AF W++ EIE+RF Q+L GEM+G AAQSIGEPATQMT
Sbjct: 1042 STFASKRVLKEYRLTKEAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMT 1098
[178][TOP]
>UniRef100_B9FZ51 DNA-directed RNA polymerase n=1 Tax=Oryza sativa Japonica Group
RepID=B9FZ51_ORYSJ
Length = 1526
Score = 126 bits (316), Expect = 1e-27
Identities = 71/177 (40%), Positives = 102/177 (57%)
Frame = +3
Query: 18 EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 197
E +L+ DR L E+ TG+ P+ VN++RLIWNA++ F + SD+ P +IV +
Sbjct: 621 EVQKLEADRFQLGSEIATTGDNTWPMPVNLKRLIWNAQKTFKIDLRRPSDMHPMEIVEAI 680
Query: 198 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 377
+ L R +V+ D+ ++A Q NATL F + +R
Sbjct: 681 DKLQERLKVVPGDDAMSIEA---------------------------QKNATLFFNILLR 713
Query: 378 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMT 548
++ ASK VL E+RLT++AF W++ EIE+RF Q+L GEM+G AAQSIGEPATQMT
Sbjct: 714 STFASKRVLKEYRLTKEAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMT 770
[179][TOP]
>UniRef100_B8BAW1 DNA-directed RNA polymerase n=1 Tax=Oryza sativa Indica Group
RepID=B8BAW1_ORYSI
Length = 1449
Score = 126 bits (316), Expect = 1e-27
Identities = 71/177 (40%), Positives = 102/177 (57%)
Frame = +3
Query: 18 EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 197
E +L+ DR L E+ TG+ P+ VN++RLIWNA++ F + SD+ P +IV +
Sbjct: 920 EVQKLEADRFQLGSEIATTGDNTWPMPVNLKRLIWNAQKTFKIDLRRPSDMHPMEIVEAI 979
Query: 198 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 377
+ L R +V+ D+ ++A Q NATL F + +R
Sbjct: 980 DKLQERLKVVPGDDAMSIEA---------------------------QKNATLFFNILLR 1012
Query: 378 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMT 548
++ ASK VL E+RLT++AF W++ EIE+RF Q+L GEM+G AAQSIGEPATQMT
Sbjct: 1013 STFASKRVLKEYRLTKEAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMT 1069
[180][TOP]
>UniRef100_Q6CBQ3 DNA-directed RNA polymerase n=1 Tax=Yarrowia lipolytica
RepID=Q6CBQ3_YARLI
Length = 1750
Score = 125 bits (315), Expect = 2e-27
Identities = 75/181 (41%), Positives = 104/181 (57%)
Frame = +3
Query: 6 LLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKI 185
+L +E+ QL DR LR EVF G+ PL VNI R++ N++RIF+V ++ SDL+ +I
Sbjct: 931 VLDEEYNQLLTDRRLLREEVFTNGDHNWPLPVNIRRVVQNSQRIFNVDKSKVSDLTIPEI 990
Query: 186 VRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQ 365
V GV+ L R ++ D L++ AQ NAT+LFQ
Sbjct: 991 VEGVQSLCKRLTIVRGDSS---------------------------LAKEAQENATMLFQ 1023
Query: 366 VHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQM 545
VR+ +K V+ E+RL R AF W++ EIE +F +++ GEMVG AAQSIGEPATQM
Sbjct: 1024 CLVRSRFPTKRVIEEYRLNRAAFEWVMGEIETQFAKSVVHPGEMVGVIAAQSIGEPATQM 1083
Query: 546 T 548
T
Sbjct: 1084 T 1084
[181][TOP]
>UniRef100_P36594 DNA-directed RNA polymerase II subunit rpb1 n=1
Tax=Schizosaccharomyces pombe RepID=RPB1_SCHPO
Length = 1752
Score = 125 bits (315), Expect = 2e-27
Identities = 74/182 (40%), Positives = 104/182 (57%)
Frame = +3
Query: 3 ELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSK 182
+LL +E+ QL DR+ L +F G+A+ PL VN++R+I NA +IF + +DL PS
Sbjct: 929 DLLDEEYTQLVADRELLCKFIFPKGDARWPLPVNVQRIIQNALQIFHLEAKKPTDLLPSD 988
Query: 183 IVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLF 362
I+ G+ L+ + + D I R++ Q NATLLF
Sbjct: 989 IINGLNELIAKLTIFRGS-----DRITRDV----------------------QNNATLLF 1021
Query: 363 QVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQ 542
Q+ +R+ A K V+ E+RL + AF W++ E+E RFQQA+ GEMVG AAQSIGEPATQ
Sbjct: 1022 QILLRSKFAVKRVIMEYRLNKVAFEWIMGEVEARFQQAVVSPGEMVGTLAAQSIGEPATQ 1081
Query: 543 MT 548
MT
Sbjct: 1082 MT 1083
[182][TOP]
>UniRef100_C5Y387 DNA-directed RNA polymerase n=1 Tax=Sorghum bicolor
RepID=C5Y387_SORBI
Length = 1874
Score = 125 bits (314), Expect = 2e-27
Identities = 77/181 (42%), Positives = 102/181 (56%)
Frame = +3
Query: 6 LLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKI 185
+L E +L+ DR L E+ G PL VN++RLIWNA++ F + SD+ P +I
Sbjct: 946 VLEAEVHKLEADRFQLGTEIATNGSHTWPLPVNLKRLIWNAQKTFKIDIRTCSDMHPIEI 1005
Query: 186 VRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQ 365
V ++ L R +V+ D DAI+ E AQ NATL F
Sbjct: 1006 VEAIDKLQERLKVVPGD-----DAISIE----------------------AQKNATLFFN 1038
Query: 366 VHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQM 545
+H+RA+ ASK VL E+RLTR+AF W++ EI RF Q+L EM+G AAQSIGEPATQM
Sbjct: 1039 IHLRATFASKRVLREYRLTREAFEWIIDEIVWRFSQSLVAPSEMIGCVAAQSIGEPATQM 1098
Query: 546 T 548
T
Sbjct: 1099 T 1099
[183][TOP]
>UniRef100_A9QMH0 DNA-directed RNA polymerase (Fragment) n=1 Tax=Panagrellus
redivivus RepID=A9QMH0_PANRE
Length = 636
Score = 125 bits (314), Expect = 2e-27
Identities = 73/182 (40%), Positives = 105/182 (57%)
Frame = +3
Query: 3 ELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSK 182
E L +EW +L +DR LR E+F G+AK L N++RLIWNA++IF V ++L P+
Sbjct: 160 EKLEQEWRKLCEDRAMLR-EIFPKGDAKTVLPCNLQRLIWNAQKIFHVDLRKPTELHPAT 218
Query: 183 IVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLF 362
I+ GV L R +++ + ++S AQ NATLL
Sbjct: 219 IIEGVRKLGDRLVIVSGTD---------------------------KISRQAQENATLLM 251
Query: 363 QVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQ 542
+ +R++ A+K V ++LT +AF W++ EIE+RF QA+ GEMVG AAQS+GEPATQ
Sbjct: 252 NILLRSTFATKQVAEVYKLTNEAFEWIIGEIESRFNQAIVQPGEMVGPLAAQSLGEPATQ 311
Query: 543 MT 548
MT
Sbjct: 312 MT 313
[184][TOP]
>UniRef100_Q1L5Y7 DNA-directed RNA polymerase (Fragment) n=1 Tax=Antirrhinum majus
RepID=Q1L5Y7_ANTMA
Length = 780
Score = 125 bits (313), Expect = 3e-27
Identities = 77/177 (43%), Positives = 101/177 (57%)
Frame = +3
Query: 18 EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 197
E +L+ DR L + TG+ PL VNI RL+ NA++ F V SD+ P +IV V
Sbjct: 627 EVQKLEADRFQLGTGIATTGDNSWPLPVNIRRLVLNAQKTFKVDFRRPSDMHPMEIVEAV 686
Query: 198 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 377
+ L R +V+ D+ LS AQ NATL F + +R
Sbjct: 687 DKLQERLKVVVGDD---------------------------YLSMEAQKNATLFFNILLR 719
Query: 378 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMT 548
++LASK VL E+RLTR+AF W++ EIE+RF Q+L AGEM+G AAQSIGEPATQMT
Sbjct: 720 SALASKRVLKEYRLTREAFEWVIGEIESRFLQSLVAAGEMIGCVAAQSIGEPATQMT 776
[185][TOP]
>UniRef100_Q6E224 DNA-directed RNA polymerase (Fragment) n=1 Tax=Caenorhabditis
drosophilae RepID=Q6E224_9PELO
Length = 633
Score = 125 bits (313), Expect = 3e-27
Identities = 71/182 (39%), Positives = 105/182 (57%)
Frame = +3
Query: 3 ELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSK 182
E + EW QL++DR LR ++F G+AK+ L N++RL+WNA++IF V +LSP
Sbjct: 158 EKVESEWTQLEEDRRLLR-KIFPKGDAKIVLPCNLQRLMWNAQKIFKVDMRKPVNLSPLH 216
Query: 183 IVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLF 362
++ GV L + ++ +D +S+ AQ NATLL
Sbjct: 217 VIDGVRELSKKLVIVGGSDD---------------------------ISKQAQYNATLLM 249
Query: 363 QVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQ 542
+ +R++L +K + + +L +AF WLL E+E+RF QA+A GEMVGA AAQS+GEPA Q
Sbjct: 250 NILLRSTLCTKKLCTSSKLNTEAFDWLLGEVESRFMQAIAQPGEMVGALAAQSLGEPAPQ 309
Query: 543 MT 548
MT
Sbjct: 310 MT 311
[186][TOP]
>UniRef100_A8BDP1 RNA polymerase II largest subunit (Fragment) n=1 Tax=Paragordius
varius RepID=A8BDP1_PARVA
Length = 467
Score = 125 bits (313), Expect = 3e-27
Identities = 69/180 (38%), Positives = 107/180 (59%)
Frame = +3
Query: 9 LAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIV 188
L +EW ++K+D+ LR ++F TG++K+ L N++R+IWNA++IF + SDL P K+V
Sbjct: 92 LEREWERIKEDQTLLR-QIFPTGDSKVVLPCNLQRIIWNAQKIFRINPRLPSDLHPLKVV 150
Query: 189 RGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQV 368
RGV+ L + V+ + + +S+ AQL+AT L
Sbjct: 151 RGVQELSEKLIVV---------------------------KGVDRISQRAQLDATFLMNA 183
Query: 369 HVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMT 548
+R++L ++ V E +L+ AF W+L EIE+RF+ +L GEMVG +AQS+GEPATQMT
Sbjct: 184 LIRSTLCTRRVAEEFKLSSDAFDWVLGEIESRFRSSLVDPGEMVGPLSAQSLGEPATQMT 243
[187][TOP]
>UniRef100_P18616 DNA-directed RNA polymerase II subunit RPB1 n=1 Tax=Arabidopsis
thaliana RepID=RPB1_ARATH
Length = 1840
Score = 125 bits (313), Expect = 3e-27
Identities = 74/177 (41%), Positives = 103/177 (58%)
Frame = +3
Query: 18 EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 197
E+++L+ DR L E+ G++ PL VNI+R IWNA++ F + SD+ P +IV V
Sbjct: 952 EYSKLETDRFQLGTEIATNGDSTWPLPVNIKRHIWNAQKTFKIDLRKISDMHPVEIVDAV 1011
Query: 198 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 377
+ L R V+ D+ LS AQ NATL F + +R
Sbjct: 1012 DKLQERLLVVPGDD---------------------------ALSVEAQKNATLFFNILLR 1044
Query: 378 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMT 548
++LASK VL E++L+R+AF W++ EIE+RF Q+L GEM+G AAQSIGEPATQMT
Sbjct: 1045 STLASKRVLEEYKLSREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMT 1101
[188][TOP]
>UniRef100_A1YIB6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Basidiobolus ranarum
RepID=A1YIB6_9FUNG
Length = 1018
Score = 124 bits (312), Expect = 3e-27
Identities = 73/178 (41%), Positives = 101/178 (56%)
Frame = +3
Query: 6 LLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKI 185
+L +E+ QL DR LR +F +G+ PL N+ RL+WNA+ IF + + S+L P +I
Sbjct: 868 MLDEEYRQLCDDRRVLREFIFTSGDQAWPLPGNLRRLVWNAQNIFHIDKRKPSNLHPLQI 927
Query: 186 VRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQ 365
+ GV+LL+ R V+ + +LS AQLNATLL+Q
Sbjct: 928 IEGVKLLIDRLIVVRGSD---------------------------KLSNEAQLNATLLYQ 960
Query: 366 VHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPAT 539
+R++L++K VL + L +AF W+L EIE RFQ A GEMVG AAQSIGEPAT
Sbjct: 961 CLLRSTLSTKRVLEDFHLNAQAFEWILGEIETRFQTAQVAPGEMVGTVAAQSIGEPAT 1018
[189][TOP]
>UniRef100_Q010D7 DNA-directed RNA polymerase n=1 Tax=Ostreococcus tauri
RepID=Q010D7_OSTTA
Length = 1673
Score = 124 bits (310), Expect = 6e-27
Identities = 72/184 (39%), Positives = 107/184 (58%), Gaps = 2/184 (1%)
Frame = +3
Query: 3 ELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQ--NDRSDLSP 176
E++ EW +L+KDR LR +VF TG+ + L VN++R+IWNA++ + + + +LS
Sbjct: 941 EIIDAEWERLQKDRVELR-KVFPTGDPHVHLPVNMKRIIWNAQKQYGMYRPGGSEEELSV 999
Query: 177 SKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATL 356
+ ++ V LL + V+ + ++A Q N TL
Sbjct: 1000 THVIESVAELLPKLIVVAGTDPLSIEA---------------------------QRNGTL 1032
Query: 357 LFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPA 536
LF HVRA+LA+K VL +H+LTR F W++ E+E+RF+ ALAP G+ +G AAQSIGEPA
Sbjct: 1033 LFFAHVRANLAAKRVLKDHKLTRAGFDWVIGEVESRFKMALAPPGDGIGVVAAQSIGEPA 1092
Query: 537 TQMT 548
TQMT
Sbjct: 1093 TQMT 1096
[190][TOP]
>UniRef100_A8BDP3 RNA polymerase II largest subunit (Fragment) n=1 Tax=Priapulus
caudatus RepID=A8BDP3_PRICU
Length = 434
Score = 124 bits (310), Expect = 6e-27
Identities = 70/177 (39%), Positives = 102/177 (57%)
Frame = +3
Query: 18 EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 197
EW QL KDR +R VF +G++++ L N++R+IWNA++IF + SDL P +++ GV
Sbjct: 95 EWDQLXKDRXVIR-TVFPSGDSRVVLPCNLQRMIWNAQKIFHINTRSPSDLHPLRVIEGV 153
Query: 198 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 377
L + ++ ++ LS+ AQ NATL +R
Sbjct: 154 RDLSKKLIIVEGED---------------------------RLSKQAQENATLNINAMLR 186
Query: 378 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMT 548
++L +K V E++LT ++F WLL E+E+RFQ A A GEMVG AAQS+GEPATQMT
Sbjct: 187 STLCTKRVAEEYKLTTESFEWLLGEVESRFQHAQAQPGEMVGPLAAQSLGEPATQMT 243
[191][TOP]
>UniRef100_Q9U5F6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Eptatretus burgeri
RepID=Q9U5F6_EPTBU
Length = 595
Score = 123 bits (309), Expect = 8e-27
Identities = 68/173 (39%), Positives = 101/173 (58%)
Frame = +3
Query: 9 LAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIV 188
L +E+ Q++ DR+ LR VF TG++K+ L N++R+IWNA++IF + +DL+P ++V
Sbjct: 451 LEREFEQIRDDREVLR-AVFPTGDSKVVLPCNLQRMIWNAQKIFHINTRSSTDLNPLRVV 509
Query: 189 RGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQV 368
GV L + +++ D+ +S AQ NATLLF
Sbjct: 510 EGVNDLTQKLQIVKGDDP---------------------------ISRQAQQNATLLFNC 542
Query: 369 HVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIG 527
HVRA+L ++ + EHRL+ +AF WLL EIE +F A+ GEMVGA AAQS+G
Sbjct: 543 HVRATLCTRRLAEEHRLSSEAFEWLLGEIEAKFNHAIVHPGEMVGALAAQSLG 595
[192][TOP]
>UniRef100_Q9BMP3 DNA-directed RNA polymerase (Fragment) n=1 Tax=Monosiga brevicollis
RepID=Q9BMP3_MONBE
Length = 1743
Score = 123 bits (309), Expect = 8e-27
Identities = 74/180 (41%), Positives = 100/180 (55%)
Frame = +3
Query: 9 LAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIV 188
L EW +L+ DR FLR VF GEA + L V + RLI +A++ F++ +DLSP+ +
Sbjct: 870 LEDEWQRLQDDRQFLR-SVFPKGEADVVLPVQLRRLIISAQKEFNIDPRRPTDLSPAHVA 928
Query: 189 RGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQV 368
+ + R V+ D+ LS+ AQ NATLLF
Sbjct: 929 QAIRTFTDRLVVIPGDDP---------------------------LSKVAQRNATLLFNC 961
Query: 369 HVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMT 548
++R+ L+S+ + HRL KAF W+L E+E RF QA A GEMVGA AAQS+GEPATQMT
Sbjct: 962 NLRSVLSSRQCIVRHRLNTKAFDWILGEVEKRFMQAQAQPGEMVGALAAQSLGEPATQMT 1021
[193][TOP]
>UniRef100_A9V5W6 DNA-directed RNA polymerase n=1 Tax=Monosiga brevicollis
RepID=A9V5W6_MONBE
Length = 1307
Score = 123 bits (309), Expect = 8e-27
Identities = 74/180 (41%), Positives = 100/180 (55%)
Frame = +3
Query: 9 LAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIV 188
L EW +L+ DR FLR VF GEA + L V + RLI +A++ F++ +DLSP+ +
Sbjct: 434 LEDEWQRLQDDRQFLR-SVFPKGEADVVLPVQLRRLIISAQKEFNIDPRRPTDLSPAHVA 492
Query: 189 RGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQV 368
+ + R V+ D+ LS+ AQ NATLLF
Sbjct: 493 QAIRTFTDRLVVIPGDDP---------------------------LSKVAQRNATLLFNC 525
Query: 369 HVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMT 548
++R+ L+S+ + HRL KAF W+L E+E RF QA A GEMVGA AAQS+GEPATQMT
Sbjct: 526 NLRSVLSSRQCIVRHRLNTKAFDWILGEVEKRFMQAQAQPGEMVGALAAQSLGEPATQMT 585
[194][TOP]
>UniRef100_Q8MX26 DNA-directed RNA polymerase (Fragment) n=1 Tax=Cercomonas sp. ATCC
50319 RepID=Q8MX26_9EUKA
Length = 1014
Score = 123 bits (308), Expect = 1e-26
Identities = 72/182 (39%), Positives = 105/182 (57%)
Frame = +3
Query: 3 ELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSK 182
+ L E QL+ DR LR ++ TGE + L VN++RLIWNA++ F V + +S++ P +
Sbjct: 860 DALETELKQLRDDRQLLRDKIQPTGEDMVHLPVNLKRLIWNAQKRFHVDRFSKSNIEPQQ 919
Query: 183 IVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLF 362
++ V+ L R V+ + LS AQ NAT LF
Sbjct: 920 VIADVKSLAERLIVVRGTDP---------------------------LSLQAQTNATTLF 952
Query: 363 QVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQ 542
++ +R+ L++K VL ++RL R AF+WL+ EIE RF QA+ GE+VG+ AAQ+IGEPATQ
Sbjct: 953 KIMLRSVLSAKRVLKDYRLNRDAFSWLIGEIEARFNQAIVHPGEVVGSIAAQAIGEPATQ 1012
Query: 543 MT 548
MT
Sbjct: 1013 MT 1014
[195][TOP]
>UniRef100_Q2PYS3 DNA-directed RNA polymerase (Fragment) n=1 Tax=Cladochytrium
replicatum RepID=Q2PYS3_9FUNG
Length = 981
Score = 122 bits (307), Expect = 1e-26
Identities = 76/175 (43%), Positives = 103/175 (58%), Gaps = 1/175 (0%)
Frame = +3
Query: 3 ELLAKEWAQLKKDRDFLRHEVFKTGEA-KLPLAVNIERLIWNAKRIFDVRQNDRSDLSPS 179
ELL E+ QL +DR LR E+F + LPL VN++R+IW A+++FD R+ +SDL P
Sbjct: 836 ELLHNEYDQLYEDRRVLREEIFAAEHSFSLPLPVNLKRVIWKAQKLFDRRK--QSDLHPR 893
Query: 180 KIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLL 359
I++ V+ LL RT V+ + ELS AQ NATLL
Sbjct: 894 HIIKSVQELLERTVVIRGKD---------------------------ELSVEAQANATLL 926
Query: 360 FQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSI 524
FQ+ VR++LA++ VL E RL R+AF W++ EI++RF Q L GEMVG AAQSI
Sbjct: 927 FQILVRSTLATRRVLEEFRLDRRAFDWIIGEIDSRFNQTLVHPGEMVGTIAAQSI 981
[196][TOP]
>UniRef100_O00820 DNA-directed RNA polymerase (Fragment) n=1 Tax=Acanthamoeba
castellanii RepID=O00820_ACACA
Length = 1569
Score = 122 bits (306), Expect = 2e-26
Identities = 73/181 (40%), Positives = 104/181 (57%)
Frame = +3
Query: 6 LLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKI 185
+L KE+ Q+ DR LR ++F G+ + PL VN+ R+I NA++IF + SDL P +I
Sbjct: 857 ILDKEFEQILADRRLLREKIFLAGDDRWPLPVNLTRMILNAQKIFHLGPKKVSDLDPCQI 916
Query: 186 VRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQ 365
V + L+ R V+ +D +S+ AQ NA LLF
Sbjct: 917 VEDLGNLIERLVVIPGQDD---------------------------ISKEAQANAILLFS 949
Query: 366 VHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQM 545
+ +R +LAS+ VL E+RL + ++ WLL EI +RF ++L GEM+GA AAQSIGEPATQM
Sbjct: 950 ILLRFTLASRRVLQEYRLDQISWDWLLGEITDRFYKSLCDPGEMIGALAAQSIGEPATQM 1009
Query: 546 T 548
T
Sbjct: 1010 T 1010
[197][TOP]
>UniRef100_B4YT35 DNA-directed RNA polymerase (Fragment) n=1 Tax=Tenomerga cinerea
RepID=B4YT35_9COLE
Length = 553
Score = 122 bits (306), Expect = 2e-26
Identities = 70/168 (41%), Positives = 97/168 (57%)
Frame = +3
Query: 9 LAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIV 188
L +EW QL KDR+ LR ++F TGE+K+ L N++R+IWN ++IF + + +DLSP +++
Sbjct: 414 LEREWDQLTKDREALR-QIFPTGESKVVLPCNLQRMIWNVQKIFHINKRATTDLSPLRVI 472
Query: 189 RGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQV 368
+GV LL + ++ D+ LS A NATLLFQ
Sbjct: 473 QGVRQLLQKCIIVAGDD---------------------------RLSRQANENATLLFQC 505
Query: 369 HVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATA 512
VRA+L +K V E RL+ +AF WL+ EIE RFQQA GEMVGA A
Sbjct: 506 LVRATLCTKCVSEEFRLSTEAFEWLIGEIETRFQQATMCPGEMVGALA 553
[198][TOP]
>UniRef100_Q25151 DNA-directed RNA polymerase (Fragment) n=1 Tax=Helobdella stagnalis
RepID=Q25151_9ANNE
Length = 1337
Score = 122 bits (305), Expect = 2e-26
Identities = 71/177 (40%), Positives = 103/177 (58%)
Frame = +3
Query: 18 EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 197
E+ QL +DR +R ++F +G++K+ L N++RLIWNA++IF + S+L P KI+ V
Sbjct: 862 EYKQLLEDRTAIR-QIFPSGDSKIVLPCNLQRLIWNAQKIFRIHTRKPSNLHPVKIIEDV 920
Query: 198 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 377
L + ++ ++ LS+TA NATLL + VR
Sbjct: 921 RELSKKFMIVKGED---------------------------RLSKTANTNATLLMNILVR 953
Query: 378 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMT 548
++L SK V+ E L+ +AF WL+ EIE++F QA GEMVGA AAQS+GEPATQMT
Sbjct: 954 STLCSKRVIEEFHLSTEAFEWLMGEIESKFIQARVQPGEMVGALAAQSLGEPATQMT 1010
[199][TOP]
>UniRef100_C4R4Y0 DNA-directed RNA polymerase n=1 Tax=Pichia pastoris GS115
RepID=C4R4Y0_PICPG
Length = 1743
Score = 122 bits (305), Expect = 2e-26
Identities = 78/180 (43%), Positives = 99/180 (55%)
Frame = +3
Query: 9 LAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIV 188
L E+ QL DR FLR VF G+ PL VN+ R+I NA++IF + + SDL+ +I+
Sbjct: 930 LNSEYEQLVSDRKFLREIVFVNGDHNWPLPVNLRRIIQNAQQIFHLDRAKASDLTIPEII 989
Query: 189 RGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQV 368
GV L + VL + EL + AQ NAT LFQ
Sbjct: 990 HGVRDLCKKLFVLRGEN---------------------------ELIKEAQQNATSLFQC 1022
Query: 369 HVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMT 548
VRA LA++ +L E RL R AF W+L IE +FQ++L GEMVG AAQSIGEPATQMT
Sbjct: 1023 LVRARLATRRILEEFRLNRDAFEWVLGTIEAQFQRSLVHPGEMVGVIAAQSIGEPATQMT 1082
[200][TOP]
>UniRef100_Q9NJK2 DNA-directed RNA polymerase (Fragment) n=1 Tax=Polyxenus fasciculatus
RepID=Q9NJK2_9MYRI
Length = 751
Score = 121 bits (304), Expect = 3e-26
Identities = 74/177 (41%), Positives = 100/177 (56%)
Frame = +3
Query: 9 LAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIV 188
L +EW LK DR+ LR +F G++K+ L N++R+IWNA++IF + +DLSP +++
Sbjct: 603 LEREWXTLKLDREVLR-TIFPKGDSKVVLPCNLQRMIWNAQKIFHINVRTPTDLSPLRVI 661
Query: 189 RGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQV 368
GV L + V+ EDA LS+ A NATLL
Sbjct: 662 EGVRDLTKKL-VIVVGEDA--------------------------LSKQANDNATLLINC 694
Query: 369 HVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPAT 539
+R++L +K V E RL+ +AF WLL EIE RFQ A GEMVGA AAQS+GEPAT
Sbjct: 695 LIRSTLCTKRVAEEFRLSAEAFEWLLGEIETRFQHAQVQPGEMVGALAAQSLGEPAT 751
[201][TOP]
>UniRef100_A7R1R2 DNA-directed RNA polymerase n=1 Tax=Vitis vinifera
RepID=A7R1R2_VITVI
Length = 429
Score = 121 bits (303), Expect = 4e-26
Identities = 73/177 (41%), Positives = 105/177 (59%)
Frame = +3
Query: 18 EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 197
E +L+ DR+ L E+ TG++ + VN++RLIWNA++ F + SD+ +IV V
Sbjct: 207 EVQKLEADRNQLGTEIASTGDSFWSMPVNLKRLIWNAQKTFKIDLRRPSDMHLMEIVEAV 266
Query: 198 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 377
+ L R +V+ D D I+ E AQ NATLLF + +R
Sbjct: 267 DKLQERLKVVPGD-----DLISME----------------------AQKNATLLFNILLR 299
Query: 378 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMT 548
++ +SK VL+E+RL+R+AF W++ EIE+RF Q+L GEM+G AAQSIGEPATQMT
Sbjct: 300 STFSSKRVLNEYRLSREAFDWVIGEIESRFLQSLVSPGEMIGCIAAQSIGEPATQMT 356
[202][TOP]
>UniRef100_A1YIB9 DNA-directed RNA polymerase (Fragment) n=1 Tax=Allomyces macrogynus
RepID=A1YIB9_ALLMA
Length = 1008
Score = 121 bits (303), Expect = 4e-26
Identities = 73/179 (40%), Positives = 104/179 (58%)
Frame = +3
Query: 3 ELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSK 182
+LL +E+ QL++DR+ LRH +F G+A+ PL NI+R+IWNA+ +F + + S+L P
Sbjct: 858 QLLDQEYRQLEEDRERLRH-IFPRGDARWPLPGNIQRIIWNAQNLFKIDKTKPSNLHPEY 916
Query: 183 IVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLF 362
+V V L + V+ + V+A Q NATLL
Sbjct: 917 VVNEVRKLCDKLMVIPGTDKISVEA---------------------------QRNATLLS 949
Query: 363 QVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPAT 539
Q+ VR++LA+K V+ E RL ++AF ++L EI RF Q+L AGEMVG AAQSIGEPAT
Sbjct: 950 QILVRSTLATKRVIEEFRLDKRAFDYVLGEIATRFAQSLVHAGEMVGIIAAQSIGEPAT 1008
[203][TOP]
>UniRef100_B0DB45 DNA-directed RNA polymerase n=1 Tax=Laccaria bicolor S238N-H82
RepID=B0DB45_LACBS
Length = 1742
Score = 120 bits (302), Expect = 5e-26
Identities = 75/182 (41%), Positives = 101/182 (55%), Gaps = 2/182 (1%)
Frame = +3
Query: 9 LAKEWAQLKKDRDFLRHEVFKTGEAKLP--LAVNIERLIWNAKRIFDVRQNDRSDLSPSK 182
L +E+A+L +DR LRH +F P L VN+ R++ NA +IF + + SDL P
Sbjct: 933 LDEEFARLVEDRRLLRHFIFPRVPTTQPHYLPVNLHRIVQNAIQIFHIDRRKPSDLEPGY 992
Query: 183 IVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLF 362
IV GV L R V+ D+ LS AQLNATL F
Sbjct: 993 IVDGVNELCGRLVVVRGDD---------------------------PLSREAQLNATLTF 1025
Query: 363 QVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQ 542
++H+RA+ AS+ VL + LTR+AF W++ E+E +F Q++ GEM G AAQSIGEPATQ
Sbjct: 1026 RMHLRATFASRRVLEKFHLTREAFDWVMGEVETKFNQSVVHPGEMCGTLAAQSIGEPATQ 1085
Query: 543 MT 548
MT
Sbjct: 1086 MT 1087
[204][TOP]
>UniRef100_A7S8F9 DNA-directed RNA polymerase n=1 Tax=Nematostella vectensis
RepID=A7S8F9_NEMVE
Length = 1929
Score = 120 bits (301), Expect = 7e-26
Identities = 72/180 (40%), Positives = 103/180 (57%)
Frame = +3
Query: 9 LAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIV 188
L E+ +L++DR+ LR ++ +G A++ L VN+ RLIWNA++ F + SDL P +++
Sbjct: 948 LEGEFNKLQEDREILR-KIQPSGNARVALPVNLSRLIWNAQKTFHITNRSASDLHPLRVI 1006
Query: 189 RGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQV 368
GV L + V+ + ED +S+ AQ NATLLF +
Sbjct: 1007 EGVRELSKKL-VIVAGED--------------------------HISKQAQFNATLLFNI 1039
Query: 369 HVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMT 548
+R++L +K V E L+ +AF WLL EIE RF + GEMVGA AAQS+GEPATQMT
Sbjct: 1040 LLRSTLCTKRVAEEFHLSSEAFEWLLGEIETRFNHSHVKPGEMVGALAAQSLGEPATQMT 1099
[205][TOP]
>UniRef100_A8N128 DNA-directed RNA polymerase n=1 Tax=Coprinopsis cinerea okayama7#130
RepID=A8N128_COPC7
Length = 1642
Score = 120 bits (301), Expect = 7e-26
Identities = 73/182 (40%), Positives = 106/182 (58%), Gaps = 2/182 (1%)
Frame = +3
Query: 9 LAKEWAQLKKDRDFLRHEVFKTGEAKLP--LAVNIERLIWNAKRIFDVRQNDRSDLSPSK 182
L +E+A+L +DR LR+ +F A + L VN++RL+ NA +IF + + SDL P+
Sbjct: 880 LDEEYARLVEDRRLLRNFIFPRRSANVDFYLPVNLQRLVQNASQIFHIDRRKPSDLDPAY 939
Query: 183 IVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLF 362
IV + L R ++ D+ LS+ AQ N+TLLF
Sbjct: 940 IVDSIHELGKRLVIVRGDD---------------------------PLSKEAQDNSTLLF 972
Query: 363 QVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQ 542
++H+RA+ A++ V+ + RLTR+AF W+L EIE +F Q++A GEM G AAQSIGEPATQ
Sbjct: 973 RMHLRATFAARKVIEQMRLTREAFEWILGEIETKFNQSIAHPGEMCGTLAAQSIGEPATQ 1032
Query: 543 MT 548
MT
Sbjct: 1033 MT 1034
[206][TOP]
>UniRef100_UPI0000F24379 DNA-directed RNA polymerase II largest subunit (RNA polymerase II
subunit 1) (B220) n=1 Tax=Pichia stipitis CBS 6054
RepID=UPI0000F24379
Length = 1739
Score = 120 bits (300), Expect = 8e-26
Identities = 73/182 (40%), Positives = 101/182 (55%)
Frame = +3
Query: 3 ELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSK 182
++L +E+ QL DR +LR F G+ PL VN+ R+I NA++IF + SDL +
Sbjct: 927 KVLDEEYKQLLDDRKYLREVCFPNGDFSWPLPVNLRRIIQNAQQIFHNGRYKASDLRLDE 986
Query: 183 IVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLF 362
++ GV L + V+ D EL + AQ NATLLF
Sbjct: 987 VIVGVRSLCEKLLVVRGDT---------------------------ELVKEAQANATLLF 1019
Query: 363 QVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQ 542
Q VR+ LAS+ V+ E +L R +F W++ EIE +FQ+++ GEMVG AAQSIGEPATQ
Sbjct: 1020 QCLVRSRLASRRVIEEFKLNRSSFEWVVGEIETQFQKSIVHPGEMVGVIAAQSIGEPATQ 1079
Query: 543 MT 548
MT
Sbjct: 1080 MT 1081
[207][TOP]
>UniRef100_B4YT41 DNA-directed RNA polymerase (Fragment) n=1 Tax=Macrogyrus oblongus
RepID=B4YT41_9COLE
Length = 554
Score = 120 bits (300), Expect = 8e-26
Identities = 71/169 (42%), Positives = 99/169 (58%)
Frame = +3
Query: 9 LAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIV 188
L EW QL++DR+ LR ++F GE+K+ L N++R+IWN ++IF + + +DLSP +++
Sbjct: 414 LELEWEQLRRDREALR-QIFPNGESKVVLPCNLQRMIWNVQKIFHINKRAPTDLSPLRVI 472
Query: 189 RGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQV 368
+GV LL R V+ + ED LS+ A NATLLFQ
Sbjct: 473 QGVRELLQRC-VIVAGED--------------------------RLSKQANENATLLFQC 505
Query: 369 HVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAA 515
VR++L +K V E RL+ +AF WL+ EIE RFQQA GEMVGA AA
Sbjct: 506 LVRSTLCTKCVSEEFRLSTEAFEWLIGEIETRFQQAQCAPGEMVGALAA 554
[208][TOP]
>UniRef100_A9QMR7 DNA-directed RNA polymerase (Fragment) n=1 Tax=Bunonema reticulatum
RepID=A9QMR7_9BILA
Length = 614
Score = 120 bits (300), Expect = 8e-26
Identities = 74/178 (41%), Positives = 99/178 (55%)
Frame = +3
Query: 15 KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 194
+EW QL KDR LR E+F G+AK+ L N++RLIWNA++IF V LSP +++ G
Sbjct: 149 EEWKQLVKDRRTLR-EIFPKGDAKVVLPCNVQRLIWNAQKIFHVEIRRPVSLSPLRVIEG 207
Query: 195 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 374
V L R V+ S ED +S+ AQ NATLL ++ +
Sbjct: 208 VRELTARL-VIVSGED--------------------------HISQHAQENATLLIKILL 240
Query: 375 RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMT 548
R++L S+ + +HRL +AF WLL E+ RFQQA A AAQS+GEPATQMT
Sbjct: 241 RSTLCSRKMAEQHRLNAEAFEWLLGEVXTRFQQAXXXXXXXXXALAAQSLGEPATQMT 298
[209][TOP]
>UniRef100_A3GID7 DNA-directed RNA polymerase n=1 Tax=Pichia stipitis
RepID=A3GID7_PICST
Length = 1739
Score = 120 bits (300), Expect = 8e-26
Identities = 73/182 (40%), Positives = 101/182 (55%)
Frame = +3
Query: 3 ELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSK 182
++L +E+ QL DR +LR F G+ PL VN+ R+I NA++IF + SDL +
Sbjct: 927 KVLDEEYKQLLDDRKYLREVCFPNGDFSWPLPVNLRRIIQNAQQIFHNGRYKASDLRLDE 986
Query: 183 IVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLF 362
++ GV L + V+ D EL + AQ NATLLF
Sbjct: 987 VIVGVRSLCEKLLVVRGDT---------------------------ELVKEAQANATLLF 1019
Query: 363 QVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQ 542
Q VR+ LAS+ V+ E +L R +F W++ EIE +FQ+++ GEMVG AAQSIGEPATQ
Sbjct: 1020 QCLVRSRLASRRVIEEFKLNRSSFEWVVGEIETQFQKSIVHPGEMVGVIAAQSIGEPATQ 1079
Query: 543 MT 548
MT
Sbjct: 1080 MT 1081
[210][TOP]
>UniRef100_A1YIC6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Neocallimastix
frontalis RepID=A1YIC6_NEOFR
Length = 1004
Score = 120 bits (300), Expect = 8e-26
Identities = 70/179 (39%), Positives = 97/179 (54%)
Frame = +3
Query: 3 ELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSK 182
E L +E+ L++DR R +FK G++ PL VN+ RLIWNA+ IF + + SDL P
Sbjct: 853 EKLDEEYKSLQEDRKLFREFIFKNGDSSWPLPVNVRRLIWNAQNIFSINKRKESDLHPLY 912
Query: 183 IVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLF 362
I + LL R V+ D+ +LS+ AQ+N+T+ F
Sbjct: 913 ICEKRDELLKRLVVVRGDD---------------------------KLSKEAQINSTINF 945
Query: 363 QVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPAT 539
++ L++K +L + L + AF WL+ EIE RF QAL GEMVG AAQSIGEPAT
Sbjct: 946 FALIKTCLSTKRILEYYHLNKAAFDWLIGEIEVRFNQALVQPGEMVGTIAAQSIGEPAT 1004
[211][TOP]
>UniRef100_A1YIC4 DNA-directed RNA polymerase (Fragment) n=1 Tax=Chytriomyces hyalinus
RepID=A1YIC4_9FUNG
Length = 1003
Score = 120 bits (300), Expect = 8e-26
Identities = 71/178 (39%), Positives = 104/178 (58%)
Frame = +3
Query: 6 LLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKI 185
LL E+ L + R LR +VF +G+++ PL VN++RLI NA R F + + DL+P+ +
Sbjct: 853 LLDGEFKYLAEARRILREDVFPSGDSRWPLPVNLKRLIANATRSFHIDRRKPVDLNPTVV 912
Query: 186 VRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQ 365
++GV++LL + V+ + LS AQ NATLLFQ
Sbjct: 913 IQGVQMLLDKLVVVRGYDT---------------------------LSILAQQNATLLFQ 945
Query: 366 VHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPAT 539
+ ++++L+S+ V+ E++L AF WLL EI+ RF QA+ GEMVG AAQSIGEPAT
Sbjct: 946 ILLKSTLSSRKVIDEYKLNSHAFEWLLGEIDQRFNQAIVHPGEMVGTIAAQSIGEPAT 1003
[212][TOP]
>UniRef100_Q9BMP2 DNA-directed RNA polymerase (Fragment) n=1 Tax=Stylonychia mytilus
RepID=Q9BMP2_STYMT
Length = 1678
Score = 119 bits (298), Expect = 1e-25
Identities = 69/180 (38%), Positives = 105/180 (58%)
Frame = +3
Query: 9 LAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIV 188
L E+ Q+ +DRD LR + K+ E + LAVN+ R+IWNAK F +R N +S+L P+ ++
Sbjct: 840 LENEYKQIIQDRDDLRFTILKSQEDAVHLAVNVPRIIWNAKEQFSIRPNQKSNLEPTYVL 899
Query: 189 RGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQV 368
++ L+ D+ A + + P L A ++T LF++
Sbjct: 900 SRLQNLM--------DDLAPIPGVMIHKDP---------------LILEANSDSTWLFKI 936
Query: 369 HVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMT 548
++R+ L SK V+ + RL++ AF W+L EI++RF QAL GEMVG+ AQS+GEPATQMT
Sbjct: 937 YLRSLLNSKAVIQQERLSKDAFNWILGEIKSRFDQALVNPGEMVGSIGAQSMGEPATQMT 996
[213][TOP]
>UniRef100_Q1L5Y6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Solanum lycopersicum
RepID=Q1L5Y6_SOLLC
Length = 773
Score = 118 bits (296), Expect = 2e-25
Identities = 72/174 (41%), Positives = 99/174 (56%)
Frame = +3
Query: 18 EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 197
E +L+ DR L E+ TG+ PL VNI+RL+ NA++ F + SD+ P +IV V
Sbjct: 627 EVQKLEADRHQLGTEIAVTGDNSWPLPVNIQRLVLNAQKTFKIDFRRPSDMHPMEIVEAV 686
Query: 198 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 377
+ L R +V+ D+ LS AQ NATL F + +R
Sbjct: 687 DKLQERLKVVPGDD---------------------------YLSMEAQKNATLFFNILLR 719
Query: 378 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPAT 539
++LASK VL E+RL+R+AF W++ EIE+RF Q+L GEM+G AAQSIGEPAT
Sbjct: 720 SALASKRVLKEYRLSREAFEWVVGEIESRFLQSLVAPGEMIGCVAAQSIGEPAT 773
[214][TOP]
>UniRef100_Q2N108 DNA-directed RNA polymerase II largest subunit (Fragment) n=1
Tax=Aphrocallistes vastus RepID=Q2N108_9METZ
Length = 254
Score = 118 bits (296), Expect = 2e-25
Identities = 69/172 (40%), Positives = 99/172 (57%)
Frame = +3
Query: 15 KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 194
+E+A+L DR LR E+FK G +K+ L N+ R+IWNA++ F + + SDL+P K++ G
Sbjct: 111 EEFARLHDDRMILR-EIFKDGNSKVVLPCNLSRMIWNAQKTFKINTRNNSDLNPLKVIEG 169
Query: 195 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 374
VE L + V+ ED+ +S+ AQ NATLL +H+
Sbjct: 170 VEELCKKL-VIVDGEDS--------------------------ISKEAQYNATLLINIHL 202
Query: 375 RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGE 530
R++LA K V+ EH L+ +AF WLL EIE R + GEMVGA +AQS+GE
Sbjct: 203 RSTLACKRVMEEHHLSSQAFDWLLGEIETRXNLSKVQPGEMVGALSAQSLGE 254
[215][TOP]
>UniRef100_A9QMS4 DNA-directed RNA polymerase (Fragment) n=1 Tax=Poikilolaimus
oxycercus RepID=A9QMS4_9BILA
Length = 612
Score = 118 bits (296), Expect = 2e-25
Identities = 66/177 (37%), Positives = 101/177 (57%)
Frame = +3
Query: 18 EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 197
EW QLK+DR LR ++F G +K+ L NI+RLIWNA++IF V + ++LSP ++ +
Sbjct: 160 EWEQLKEDRGLLR-KIFPKGGSKVVLPCNIQRLIWNAQKIFRVDNRNPTELSPLYVIEAI 218
Query: 198 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 377
L + +++ D+ ++S+ AQ NATLL + +R
Sbjct: 219 RKLSEKLVIVSGDD---------------------------KISQQAQYNATLLMNILIR 251
Query: 378 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMT 548
++L SK V +HRL ++AF ++L EIENRFQ+A+ G AQ +G+PATQMT
Sbjct: 252 STLCSKQVAEKHRLNQEAFEYILGEIENRFQRAIVXXXXXXGVLXAQXLGQPATQMT 308
[216][TOP]
>UniRef100_Q5KGG3 DNA-directed RNA polymerase n=1 Tax=Filobasidiella neoformans
RepID=Q5KGG3_CRYNE
Length = 1786
Score = 118 bits (296), Expect = 2e-25
Identities = 71/182 (39%), Positives = 103/182 (56%)
Frame = +3
Query: 3 ELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSK 182
+LL +E+AQ+ +DR LR E++ G PL VNI+R+I N+++IF + SDL P
Sbjct: 942 KLLDEEFAQISEDRRILRSEIYPDGTPGHPLPVNIQRVIQNSQQIFHIDPRVPSDLDPVY 1001
Query: 183 IVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLF 362
++ + L R V+ D+ +LS AQ NATL+F
Sbjct: 1002 LLEQRDALADRLLVVRGDD---------------------------KLSRAAQKNATLVF 1034
Query: 363 QVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQ 542
+ +R+ LA++ VL E+ L R+AF W++ E+E F +A+ A EMVG AAQSIGEPATQ
Sbjct: 1035 NMLLRSHLATRRVLEEYHLNREAFDWVIGEVEQIFNKAVVNAAEMVGTLAAQSIGEPATQ 1094
Query: 543 MT 548
MT
Sbjct: 1095 MT 1096
[217][TOP]
>UniRef100_UPI000151A8B3 hypothetical protein PGUG_01105 n=1 Tax=Pichia guilliermondii ATCC
6260 RepID=UPI000151A8B3
Length = 1018
Score = 118 bits (295), Expect = 3e-25
Identities = 74/181 (40%), Positives = 100/181 (55%)
Frame = +3
Query: 6 LLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKI 185
+L +E+ QL DR +LR F G+ PL VN+ R+I NA+++F ++ SDL +I
Sbjct: 194 VLDEEYEQLCNDRRYLREVCFTNGDYTWPLPVNLRRIIQNAQQLFHGGRHKASDLRLEEI 253
Query: 186 VRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQ 365
V GV+ L + VL D L + +Q NATLLFQ
Sbjct: 254 VEGVKELCKKLLVLRGDSP---------------------------LVKESQENATLLFQ 286
Query: 366 VHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQM 545
VR+ LA++ V+ E RL R +F W + EIE +FQ++L GEMVG AAQSIGEPATQM
Sbjct: 287 CLVRSRLATRRVIEEFRLNRMSFEWAMGEIETQFQKSLVHPGEMVGVIAAQSIGEPATQM 346
Query: 546 T 548
T
Sbjct: 347 T 347
[218][TOP]
>UniRef100_Q2TUN5 DNA-directed RNA polymerase (Fragment) n=1 Tax=Ephedra viridis
RepID=Q2TUN5_EPHVI
Length = 1013
Score = 118 bits (295), Expect = 3e-25
Identities = 70/174 (40%), Positives = 97/174 (55%)
Frame = +3
Query: 3 ELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSK 182
++L E+ +L+ DR L E+ TGE PL VN++RLIWNA++IF V SD+ P +
Sbjct: 867 DVLVAEYKKLQLDRRQLGMEIAPTGENSWPLPVNLKRLIWNAQKIFKVDPRKTSDMQPLE 926
Query: 183 IVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLF 362
IV ++ L R +V+ D+ LS AQ NATL F
Sbjct: 927 IVDTIDKLQERLKVVPGDDP---------------------------LSFEAQKNATLFF 959
Query: 363 QVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSI 524
+ +R+ ASK VL E+ LTR+AF W++ E+ENRF Q+L GEM+G AAQSI
Sbjct: 960 NILLRSVFASKRVLKEYHLTREAFDWVIGEVENRFLQSLVAPGEMIGCVAAQSI 1013
[219][TOP]
>UniRef100_B7SNX4 DNA-directed RNA polymerase (Fragment) n=1 Tax=Pisum sativum
RepID=B7SNX4_PEA
Length = 1010
Score = 118 bits (295), Expect = 3e-25
Identities = 70/169 (41%), Positives = 98/169 (57%)
Frame = +3
Query: 18 EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 197
E +L DR L E+ TG++ LPL VN++RLIWNA++ F V SD+ P +IV +
Sbjct: 869 EVQKLDADRFQLATEIATTGDSSLPLPVNLKRLIWNAQKTFKVDFRRPSDMHPMEIVEAI 928
Query: 198 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 377
+ L R RV+ D+ LS+ AQ NATLLF + +R
Sbjct: 929 DKLQERLRVVPGDD---------------------------LLSQEAQKNATLLFNILLR 961
Query: 378 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSI 524
++ ASK VL E+RL+R+AF W++ EIE+RF Q+L +GEM+G AAQSI
Sbjct: 962 STFASKRVLEEYRLSREAFEWVVGEIESRFLQSLVASGEMIGCVAAQSI 1010
[220][TOP]
>UniRef100_A4S3M0 DNA-directed RNA polymerase n=1 Tax=Ostreococcus lucimarinus CCE9901
RepID=A4S3M0_OSTLU
Length = 1646
Score = 118 bits (295), Expect = 3e-25
Identities = 71/184 (38%), Positives = 105/184 (57%), Gaps = 2/184 (1%)
Frame = +3
Query: 3 ELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQND--RSDLSP 176
E+L EW +L++DR LR + TG+ + L VN++R++WNA++ + + + D ++
Sbjct: 921 EILDAEWDRLQRDRVELR-TICPTGDPHVHLPVNMKRILWNAQKQYGLYRPDSGEEEVKV 979
Query: 177 SKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATL 356
+ I+ V LL + V+ + V+A Q N T+
Sbjct: 980 THIIESVAELLPKLIVVPGTDPLSVEA---------------------------QRNGTM 1012
Query: 357 LFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPA 536
LF HVRA+LA+K VL EH+LTR F W++ EIE+RF+ ALAP G+ +G AAQSIGEPA
Sbjct: 1013 LFFAHVRANLAAKRVLKEHKLTRAGFDWVIGEIESRFKMALAPPGDGIGTVAAQSIGEPA 1072
Query: 537 TQMT 548
TQMT
Sbjct: 1073 TQMT 1076
[221][TOP]
>UniRef100_A9QMG5 DNA-directed RNA polymerase (Fragment) n=1 Tax=Mesorhabditis
longespiculosa RepID=A9QMG5_9BILA
Length = 623
Score = 118 bits (295), Expect = 3e-25
Identities = 68/177 (38%), Positives = 100/177 (56%)
Frame = +3
Query: 18 EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 197
EW +L+ DR LR ++F G+ ++ L N++RLIWNA++IF V ++LSP +++ GV
Sbjct: 164 EWQRLEDDRRLLR-KIFPRGDNRVVLPCNLQRLIWNAQKIFKVETRKTTNLSPLRVIEGV 222
Query: 198 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 377
L R ++ S ED +S+ AQ NATLL + +R
Sbjct: 223 RELSKRL-IIVSGED--------------------------RISQQAQYNATLLMNILLR 255
Query: 378 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMT 548
++L SK + +H+L ++ F WLL EIE+RFQQA+ G A QS+GEPATQMT
Sbjct: 256 STLCSKQMAEKHKLNQEGFEWLLGEIEHRFQQAIVXXXXXXGXLAXQSLGEPATQMT 312
[222][TOP]
>UniRef100_A1YIA8 DNA-directed RNA polymerase (Fragment) n=1 Tax=Taphrina deformans
RepID=A1YIA8_9ASCO
Length = 1001
Score = 118 bits (295), Expect = 3e-25
Identities = 69/179 (38%), Positives = 105/179 (58%)
Frame = +3
Query: 3 ELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSK 182
+LL +E+ +L +DR L+ +F +G++ PL VN++R+I N+K+IF + + R+DLSP+K
Sbjct: 850 KLLDQEFKELSEDRRDLQTLIFPSGDSSWPLPVNLDRIILNSKQIFHIAPHRRTDLSPAK 909
Query: 183 IVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLF 362
I GV LL R ++ ++ +S+ Q AT LF
Sbjct: 910 IYTGVRDLLSRLIIVRGND---------------------------RISKEHQQQATGLF 942
Query: 363 QVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPAT 539
Q+ VR L+ + ++ H LT +AF W++ EIE+RF Q++A AGEM G AAQSIGEPAT
Sbjct: 943 QILVRMKLSVRKLIEVHHLTSEAFDWVIGEIESRFTQSVAHAGEMCGTLAAQSIGEPAT 1001
[223][TOP]
>UniRef100_A5DCV3 DNA-directed RNA polymerase II subunit RPB1 (Fragments) n=1
Tax=Pichia guilliermondii RepID=RPB1_PICGU
Length = 1579
Score = 118 bits (295), Expect = 3e-25
Identities = 74/181 (40%), Positives = 100/181 (55%)
Frame = +3
Query: 6 LLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKI 185
+L +E+ QL DR +LR F G+ PL VN+ R+I NA+++F ++ SDL +I
Sbjct: 760 VLDEEYEQLCNDRRYLREVCFTNGDYTWPLPVNLRRIIQNAQQLFHGGRHKASDLRLEEI 819
Query: 186 VRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQ 365
V GV+ L + VL D L + +Q NATLLFQ
Sbjct: 820 VEGVKELCKKLLVLRGDSP---------------------------LVKESQENATLLFQ 852
Query: 366 VHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQM 545
VR+ LA++ V+ E RL R +F W + EIE +FQ++L GEMVG AAQSIGEPATQM
Sbjct: 853 CLVRSRLATRRVIEEFRLNRMSFEWAMGEIETQFQKSLVHPGEMVGVIAAQSIGEPATQM 912
Query: 546 T 548
T
Sbjct: 913 T 913
[224][TOP]
>UniRef100_UPI00003BD271 hypothetical protein DEHA0A14036g n=1 Tax=Debaryomyces hansenii
CBS767 RepID=UPI00003BD271
Length = 1749
Score = 117 bits (293), Expect = 6e-25
Identities = 71/182 (39%), Positives = 105/182 (57%)
Frame = +3
Query: 3 ELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSK 182
++L +E+ QL+ DR +LR F G+ PL VN+ R+I NA++IF ++ SDL +
Sbjct: 932 KVLDEEYRQLEADRRYLRDVCFPNGDFNWPLPVNLRRIIQNAQQIFHNGRHKASDLRLDE 991
Query: 183 IVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLF 362
+VRGV+ L + V+ L++ AQ NATLLF
Sbjct: 992 VVRGVQDLCTKLLVIRGKT---------------------------ALTKEAQENATLLF 1024
Query: 363 QVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQ 542
Q +R+ LA++ V+ E +L+R +F W++ EIE +FQ+++ GEMVG AAQSIGEPATQ
Sbjct: 1025 QCLLRSRLATRRVIEEFKLSRISFEWVMGEIETQFQKSIVHPGEMVGVIAAQSIGEPATQ 1084
Query: 543 MT 548
MT
Sbjct: 1085 MT 1086
[225][TOP]
>UniRef100_C0JPA2 DNA-directed RNA polymerase (Fragment) n=1 Tax=Trichoplax adhaerens
RepID=C0JPA2_TRIAD
Length = 625
Score = 117 bits (293), Expect = 6e-25
Identities = 72/177 (40%), Positives = 100/177 (56%)
Frame = +3
Query: 3 ELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSK 182
E L E+ QL KDR+ +R + + G++++ L VN+ RLIWNA++IF V SDL P K
Sbjct: 477 EKLQSEFEQLSKDRNAVR-SILQNGDSRVALPVNLNRLIWNAQKIFHVDPRKSSDLHPMK 535
Query: 183 IVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLF 362
++ V L R V+ ED +S+ AQ NATLLF
Sbjct: 536 VIDDV-CELSRKLVIVHGED--------------------------RISKQAQENATLLF 568
Query: 363 QVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEP 533
+ +R+ L+SK V E+ LT +AF WL+ E+E+RFQQ+ GEMVG AAQS+GEP
Sbjct: 569 NILLRSVLSSKRVTEEYHLTSEAFDWLIGEVESRFQQSQVQPGEMVGPLAAQSLGEP 625
[226][TOP]
>UniRef100_Q5ACI7 DNA-directed RNA polymerase n=1 Tax=Candida albicans
RepID=Q5ACI7_CANAL
Length = 1728
Score = 117 bits (293), Expect = 6e-25
Identities = 73/182 (40%), Positives = 102/182 (56%)
Frame = +3
Query: 3 ELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSK 182
++L +E+ QL KDR +LR F G+ PL VN+ R+I NA++IF + SDL +
Sbjct: 927 KILDEEYNQLLKDRKYLREVCFPNGDFSWPLPVNLRRIIQNAQQIFHNGRYRASDLRLEE 986
Query: 183 IVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLF 362
IV GV+ L + V+ D L + AQ NATLLF
Sbjct: 987 IVLGVKELCMKLLVVRGDTP---------------------------LVKEAQENATLLF 1019
Query: 363 QVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQ 542
Q +R+ LA++ V+ E +L R +F W++ EIE +FQ+++ GEMVG AAQSIGEPATQ
Sbjct: 1020 QCLLRSRLAARRVIEEFKLNRASFEWVMGEIETQFQKSIVHPGEMVGVVAAQSIGEPATQ 1079
Query: 543 MT 548
MT
Sbjct: 1080 MT 1081
[227][TOP]
>UniRef100_C4YN85 DNA-directed RNA polymerase n=1 Tax=Candida albicans
RepID=C4YN85_CANAL
Length = 1742
Score = 117 bits (293), Expect = 6e-25
Identities = 73/182 (40%), Positives = 102/182 (56%)
Frame = +3
Query: 3 ELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSK 182
++L +E+ QL KDR +LR F G+ PL VN+ R+I NA++IF + SDL +
Sbjct: 927 KILDEEYNQLLKDRKYLREVCFPNGDFSWPLPVNLRRIIQNAQQIFHNGRYRASDLRLEE 986
Query: 183 IVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLF 362
IV GV+ L + V+ D L + AQ NATLLF
Sbjct: 987 IVLGVKELCMKLLVVRGDTP---------------------------LVKEAQENATLLF 1019
Query: 363 QVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQ 542
Q +R+ LA++ V+ E +L R +F W++ EIE +FQ+++ GEMVG AAQSIGEPATQ
Sbjct: 1020 QCLLRSRLAARRVIEEFKLNRASFEWVMGEIETQFQKSIVHPGEMVGVVAAQSIGEPATQ 1079
Query: 543 MT 548
MT
Sbjct: 1080 MT 1081
[228][TOP]
>UniRef100_B5RSM9 DNA-directed RNA polymerase n=1 Tax=Debaryomyces hansenii
RepID=B5RSM9_DEBHA
Length = 1749
Score = 117 bits (293), Expect = 6e-25
Identities = 71/182 (39%), Positives = 105/182 (57%)
Frame = +3
Query: 3 ELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSK 182
++L +E+ QL+ DR +LR F G+ PL VN+ R+I NA++IF ++ SDL +
Sbjct: 932 KVLDEEYRQLEADRRYLRDVCFPNGDFNWPLPVNLRRIIQNAQQIFHNGRHKASDLRLDE 991
Query: 183 IVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLF 362
+VRGV+ L + V+ L++ AQ NATLLF
Sbjct: 992 VVRGVQDLCTKLLVIRGKT---------------------------ALTKEAQENATLLF 1024
Query: 363 QVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQ 542
Q +R+ LA++ V+ E +L+R +F W++ EIE +FQ+++ GEMVG AAQSIGEPATQ
Sbjct: 1025 QCLLRSRLATRRVIEEFKLSRISFEWVMGEIETQFQKSIVHPGEMVGVIAAQSIGEPATQ 1084
Query: 543 MT 548
MT
Sbjct: 1085 MT 1086
[229][TOP]
>UniRef100_A5E6J4 DNA-directed RNA polymerase n=1 Tax=Lodderomyces elongisporus
RepID=A5E6J4_LODEL
Length = 1745
Score = 117 bits (293), Expect = 6e-25
Identities = 74/182 (40%), Positives = 101/182 (55%)
Frame = +3
Query: 3 ELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSK 182
++L +E+ QL +DR +LR VF G+ PL VN+ R+I NA++IF ++ SDL +
Sbjct: 921 KILDEEYNQLLEDRKYLRDVVFPNGDFSWPLPVNLRRIIQNAQQIFHSGRDKPSDLRLDE 980
Query: 183 IVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLF 362
IV V L + V+ D L + AQ NATLLF
Sbjct: 981 IVESVRDLCTKFLVVRGD---------------------------TPLMKEAQENATLLF 1013
Query: 363 QVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQ 542
Q VR+ LAS+ V+ E +L + +F W L EIE +FQ+++ GEMVG AAQSIGEPATQ
Sbjct: 1014 QCLVRSRLASRRVIEEFKLNKASFEWALGEIETQFQKSVVHPGEMVGVVAAQSIGEPATQ 1073
Query: 543 MT 548
MT
Sbjct: 1074 MT 1075
[230][TOP]
>UniRef100_A1YIA7 DNA-directed RNA polymerase (Fragment) n=1 Tax=Pichia kudriavzevii
RepID=A1YIA7_ISSOR
Length = 1647
Score = 117 bits (293), Expect = 6e-25
Identities = 72/182 (39%), Positives = 104/182 (57%)
Frame = +3
Query: 3 ELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSK 182
++L +E+ QL KDR++LR VF GE PL VN+ R++ NA++IF V + SDL+ +
Sbjct: 850 KILDEEYEQLLKDREYLRTVVFPDGENNWPLPVNVRRIVQNAQQIFHVDRYKASDLTIEE 909
Query: 183 IVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLF 362
IV+ V+ L + V+ D +A RE N+TLLF
Sbjct: 910 IVKSVQELCKKFTVVRGDGGCLTEA--RE-------------------------NSTLLF 942
Query: 363 QVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQ 542
Q +R+ LA++ VL E++L + AF W++ I +F ++L GEMVG AAQSIGEPATQ
Sbjct: 943 QCLIRSKLATRRVLEEYKLNKDAFEWVVGTIAQQFARSLVNPGEMVGVVAAQSIGEPATQ 1002
Query: 543 MT 548
MT
Sbjct: 1003 MT 1004
[231][TOP]
>UniRef100_A9QME4 RNA polymerase 2 (Fragment) n=1 Tax=Oscheius tipulae
RepID=A9QME4_OSCTI
Length = 446
Score = 117 bits (292), Expect = 7e-25
Identities = 66/161 (40%), Positives = 94/161 (58%)
Frame = +3
Query: 66 FKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDA 245
F G+ K+ L N++RLIWNA++IF V + + L+P ++RGV+ L + ++ ED
Sbjct: 1 FPNGDNKVVLPCNLQRLIWNAQKIFHVETREVTSLNPLAVIRGVKNLSDKL-IIVGGED- 58
Query: 246 EVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTR 425
+S AQ NATLL + +R++L SK + + H+L +
Sbjct: 59 -------------------------RISRQAQFNATLLMNILLRSTLCSKKMATTHKLNQ 93
Query: 426 KAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMT 548
+AF WLL EIE RF+ A+A GEMVGA AAQS+GEPATQMT
Sbjct: 94 EAFDWLLGEIETRFKSAIAQPGEMVGALAAQSLGEPATQMT 134
[232][TOP]
>UniRef100_C4Y5N4 DNA-directed RNA polymerase n=1 Tax=Clavispora lusitaniae ATCC 42720
RepID=C4Y5N4_CLAL4
Length = 1402
Score = 117 bits (292), Expect = 7e-25
Identities = 71/182 (39%), Positives = 101/182 (55%)
Frame = +3
Query: 3 ELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSK 182
++L E+ QL KDR +LR F G+ PL VN+ R+I NA++IF + SDL +
Sbjct: 886 KVLDSEYEQLLKDRKYLREVCFPNGDFNWPLPVNLRRIIQNAQQIFHSGRQRASDLKLDE 945
Query: 183 IVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLF 362
IV GV+ L + V+ L++ AQ +ATLLF
Sbjct: 946 IVEGVKALCSKLLVIRGKS---------------------------RLAKEAQEDATLLF 978
Query: 363 QVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQ 542
Q VR+ LA++ ++ E +L+R +F W+ EIE +FQ+++ GEMVG AAQSIGEPATQ
Sbjct: 979 QCLVRSRLAARRIIEEFKLSRISFEWVCGEIETQFQKSIVHPGEMVGVIAAQSIGEPATQ 1038
Query: 543 MT 548
MT
Sbjct: 1039 MT 1040
[233][TOP]
>UniRef100_B9WN64 DNA-directed RNA polymerase n=1 Tax=Candida dubliniensis CD36
RepID=B9WN64_CANDC
Length = 1735
Score = 117 bits (292), Expect = 7e-25
Identities = 73/182 (40%), Positives = 101/182 (55%)
Frame = +3
Query: 3 ELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSK 182
++L +E+ QL KDR +LR F G+ PL VN+ R+I NA++IF + SDL +
Sbjct: 927 KILDEEYNQLLKDRKYLREVCFPNGDFSWPLPVNLRRIIQNAQQIFHNGRYRASDLRLEE 986
Query: 183 IVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLF 362
I+ GV L + V+ D L + AQ NATLLF
Sbjct: 987 IIFGVRELCKKLLVVRGDTP---------------------------LVKEAQENATLLF 1019
Query: 363 QVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQ 542
Q +R+ LA++ V+ E +L R +F W+L EIE +FQ+++ GEMVG AAQSIGEPATQ
Sbjct: 1020 QCLLRSRLAARRVIEEFKLNRVSFEWVLGEIETQFQKSIVHPGEMVGVVAAQSIGEPATQ 1079
Query: 543 MT 548
MT
Sbjct: 1080 MT 1081
[234][TOP]
>UniRef100_C7YI77 Predicted protein n=1 Tax=Nectria haematococca mpVI 77-13-4
RepID=C7YI77_NECH7
Length = 1750
Score = 116 bits (291), Expect = 9e-25
Identities = 72/182 (39%), Positives = 101/182 (55%), Gaps = 1/182 (0%)
Frame = +3
Query: 6 LLAKEWAQLKKDRDFLRH-EVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSK 182
LL EW L KDR +R K E + L +NI R+I +AKR+F+V+ NDRS+L PS
Sbjct: 939 LLDTEWEALLKDRRVIRQINKAKMNEEMMQLPLNITRIIESAKRVFNVKANDRSNLRPSD 998
Query: 183 IVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLF 362
++ V+ LL +++ + V+A A NAT+LF
Sbjct: 999 VIPSVQNLLDHMKIVRGTDPISVEADA---------------------------NATILF 1031
Query: 363 QVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQ 542
+ +R+ LA K V+ EHRL + AF ++ E++NR+ +A GEMVG AAQSIGEPATQ
Sbjct: 1032 KGLLRSRLAFKEVVKEHRLNKLAFDHVIGELQNRWDRAFVSPGEMVGVLAAQSIGEPATQ 1091
Query: 543 MT 548
MT
Sbjct: 1092 MT 1093
[235][TOP]
>UniRef100_C0NEY2 DNA-directed RNA polymerase n=1 Tax=Ajellomyces capsulatus G186AR
RepID=C0NEY2_AJECG
Length = 1234
Score = 116 bits (291), Expect = 9e-25
Identities = 75/180 (41%), Positives = 104/180 (57%)
Frame = +3
Query: 9 LAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIV 188
L +EW QL KDR F+R V K E + L +N++R++ +AK IF +R+ SDL P++++
Sbjct: 439 LDEEWEQLLKDRAFMR-SVAKEDEEMMQLPINVQRILESAKTIFRIREGAISDLHPAEVI 497
Query: 189 RGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQV 368
V LL R V+ D D I+RE AQ +ATLLF+
Sbjct: 498 PQVRALLERLVVVRGD-----DVISRE----------------------AQESATLLFKA 530
Query: 369 HVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMT 548
+R+ LA + ++ E+ L R AF +L IE+RF +A+A GEMVG AAQSIGEPATQMT
Sbjct: 531 QLRSRLAFRRLVVEYSLNRLAFQHVLGAIESRFSKAMANPGEMVGVLAAQSIGEPATQMT 590
[236][TOP]
>UniRef100_B4YT34 DNA-directed RNA polymerase (Fragment) n=1 Tax=Sialis sp. ALW-2008
RepID=B4YT34_9NEOP
Length = 555
Score = 116 bits (290), Expect = 1e-24
Identities = 69/171 (40%), Positives = 96/171 (56%)
Frame = +3
Query: 3 ELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSK 182
+ L KEW QL KDR+ LR ++F +G+ K+ L N++R+IWN ++IF + +DLSP +
Sbjct: 413 QALEKEWDQLVKDREALR-QIFPSGDNKVVLPCNLQRMIWNVQKIFHINGRAPTDLSPLR 471
Query: 183 IVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLF 362
++ GV LL R ++ D+ LS A NATLLF
Sbjct: 472 VLDGVSELLRRCVIVAGDDP---------------------------LSRQANENATLLF 504
Query: 363 QVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAA 515
+ VR++L +K V E RL+ +AF WL+ EIE RFQQA GEMVGA AA
Sbjct: 505 RCLVRSTLCTKRVAEEFRLSHEAFEWLIGEIETRFQQAQCAPGEMVGALAA 555
[237][TOP]
>UniRef100_Q2PYS6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Polychytrium
aggregatum RepID=Q2PYS6_9FUNG
Length = 1016
Score = 116 bits (290), Expect = 1e-24
Identities = 72/172 (41%), Positives = 96/172 (55%)
Frame = +3
Query: 9 LAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIV 188
L +E+ QL+KDR+ LR +FK G + PL VN++RLIWNA+ F+V +DL P I
Sbjct: 872 LDQEFEQLRKDRETLRWTIFKDGSSSWPLPVNLKRLIWNAQNQFEVGPRKPTDLHPLHIT 931
Query: 189 RGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQV 368
VE LL + V+ ++ V+A Q NATLLFQ+
Sbjct: 932 ESVEQLLDKLVVVRGNDPLSVEA---------------------------QKNATLLFQI 964
Query: 369 HVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSI 524
VR++LA++ VL E L K+F L+ EIE RF QA+A GEMVG AAQSI
Sbjct: 965 LVRSTLATRRVLEEFHLNSKSFQHLIGEIEMRFNQAIAHPGEMVGTIAAQSI 1016
[238][TOP]
>UniRef100_UPI000187E3DF hypothetical protein MPER_04443 n=1 Tax=Moniliophthora perniciosa
FA553 RepID=UPI000187E3DF
Length = 343
Score = 115 bits (289), Expect = 2e-24
Identities = 72/182 (39%), Positives = 100/182 (54%), Gaps = 2/182 (1%)
Frame = +3
Query: 9 LAKEWAQLKKDRDFLRHEVFKTGEAKLP--LAVNIERLIWNAKRIFDVRQNDRSDLSPSK 182
L +E+ L DR LRH +F + + L VN+ R++ NA +IF + + SDL P+
Sbjct: 134 LDEEYTALVNDRQTLRHFIFPRCDPSINQYLPVNLSRIVQNAVQIFHIDRRKPSDLEPAY 193
Query: 183 IVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLF 362
IV V+ L R V+ ++D LS AQ NATL F
Sbjct: 194 IVDAVKALCERLIVVRGNDD---------------------------LSREAQDNATLRF 226
Query: 363 QVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQ 542
++H+RA+ AS+ VL + L R+AF W+L E+E++F Q+L GEM G AAQSIGEPATQ
Sbjct: 227 RMHLRATFASRRVLEKFHLNREAFEWVLGEVESKFNQSLVNPGEMCGTLAAQSIGEPATQ 286
Query: 543 MT 548
MT
Sbjct: 287 MT 288
[239][TOP]
>UniRef100_Q0PQ08 DNA-directed RNA polymerase (Fragment) n=1 Tax=Echinoplaca
strigulacea RepID=Q0PQ08_9LECA
Length = 1017
Score = 115 bits (289), Expect = 2e-24
Identities = 71/182 (39%), Positives = 103/182 (56%)
Frame = +3
Query: 3 ELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSK 182
+L E+ +L++ R +LR + E +LP+ VNI R+I AKRIF +R +RSDL P++
Sbjct: 865 DLFDAEFQKLEEARLYLRKT--RGSEDRLPIPVNITRIIETAKRIFKIRPGNRSDLQPAE 922
Query: 183 IVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLF 362
++ V LL R V+ D+ V+ AQ NATL+
Sbjct: 923 VIPAVIALLDRLIVVQGDDPISVE---------------------------AQQNATLIL 955
Query: 363 QVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQ 542
+ H+R+ LA K +++EH L + +F +L EIE+RF +AL GEM+G AA SIGEPATQ
Sbjct: 956 KAHIRSRLAFKRLVNEHNLNKLSFQHVLGEIESRFSRALVNPGEMIGVIAAXSIGEPATQ 1015
Query: 543 MT 548
MT
Sbjct: 1016 MT 1017
[240][TOP]
>UniRef100_Q0PPZ8 DNA-directed RNA polymerase (Fragment) n=1 Tax=Hypocenomyce scalaris
RepID=Q0PPZ8_9LECA
Length = 1027
Score = 115 bits (289), Expect = 2e-24
Identities = 78/180 (43%), Positives = 100/180 (55%)
Frame = +3
Query: 9 LAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIV 188
L +EW QLK R FLR + E +L L +NI R++ AK IF ++ RSDL P ++
Sbjct: 876 LDEEWEQLKAARAFLRKDKQDDNE-QLQLPINILRILETAKTIFKIKDGARSDLHPMDVI 934
Query: 189 RGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQV 368
V LL R V+ D D ++RE AQ NATLLF+
Sbjct: 935 PQVSDLLDRLVVVRGD-----DVLSRE----------------------AQHNATLLFKA 967
Query: 369 HVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMT 548
H+R+ LA K V+ E+ L + AF +L EIE+RF +AL GEMVG AAQSIGEPATQMT
Sbjct: 968 HLRSRLAFKRVVIEYSLNKLAFQHVLGEIESRFSRALVNPGEMVGVLAAQSIGEPATQMT 1027
[241][TOP]
>UniRef100_Q0PPZ6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Lichinella iodopulchra
RepID=Q0PPZ6_9PEZI
Length = 1020
Score = 115 bits (289), Expect = 2e-24
Identities = 74/180 (41%), Positives = 99/180 (55%)
Frame = +3
Query: 9 LAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIV 188
L +EW QLK DR+FLR + E K+ L N+ R+I AK F ++ N RSDL P ++
Sbjct: 869 LDEEWEQLKADREFLRSQSTDDNE-KMHLPFNVIRIIETAKSTFKLKDNGRSDLHPVDVI 927
Query: 189 RGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQV 368
V+ LL R ++ D+ LS +Q NATLLF++
Sbjct: 928 PAVKDLLSRLIIIRGDD---------------------------PLSIESQENATLLFKI 960
Query: 369 HVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMT 548
+R+ LA K V ++RL + AF +L EIE+RF +A GEMVG AAQSIGEPATQMT
Sbjct: 961 QLRSRLAFKRVAKQYRLNKLAFQHVLGEIESRFSRAAVNPGEMVGVLAAQSIGEPATQMT 1020
[242][TOP]
>UniRef100_C5GKA7 DNA-directed RNA polymerase n=2 Tax=Ajellomyces dermatitidis
RepID=C5GKA7_AJEDR
Length = 1746
Score = 115 bits (289), Expect = 2e-24
Identities = 74/180 (41%), Positives = 104/180 (57%)
Frame = +3
Query: 9 LAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIV 188
L +EW QL KDR F+R V K E + L +N++R++ +AK IF +R+ SDL P++++
Sbjct: 952 LDEEWEQLLKDRAFMR-SVAKEDEEMMQLPINVQRILESAKTIFRIREGAISDLHPAEVI 1010
Query: 189 RGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQV 368
+ LL R V+ D D I+RE AQ +ATLLF+
Sbjct: 1011 PQIRALLDRLIVVRGD-----DVISRE----------------------AQESATLLFKA 1043
Query: 369 HVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMT 548
+R+ LA + ++ E+ L R AF +L IE+RF +A+A GEMVG AAQSIGEPATQMT
Sbjct: 1044 QLRSRLAFRRLVVEYSLNRLAFQHVLGAIESRFSKAMANPGEMVGVLAAQSIGEPATQMT 1103
[243][TOP]
>UniRef100_A6QYA7 DNA-directed RNA polymerase n=1 Tax=Ajellomyces capsulatus NAm1
RepID=A6QYA7_AJECN
Length = 1747
Score = 115 bits (289), Expect = 2e-24
Identities = 74/180 (41%), Positives = 104/180 (57%)
Frame = +3
Query: 9 LAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIV 188
L +EW QL KDR F+R V K E + L +N++R++ +AK IF +R+ SDL P++++
Sbjct: 952 LDEEWEQLLKDRAFMR-SVAKEDEEMMQLPINVQRILESAKTIFRIREGAISDLHPAEVI 1010
Query: 189 RGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQV 368
V +L R V+ D D I+RE AQ +ATLLF+
Sbjct: 1011 PQVRAMLERLVVVRGD-----DVISRE----------------------AQESATLLFKA 1043
Query: 369 HVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMT 548
+R+ LA + ++ E+ L R AF +L IE+RF +A+A GEMVG AAQSIGEPATQMT
Sbjct: 1044 QLRSRLAFRRLVVEYSLNRLAFQHVLGAIESRFSKAMANPGEMVGVLAAQSIGEPATQMT 1103
[244][TOP]
>UniRef100_Q9PTX4 DNA-directed RNA polymerase (Fragment) n=1 Tax=Lethenteron
reissneri RepID=Q9PTX4_LAMRE
Length = 595
Score = 115 bits (287), Expect = 3e-24
Identities = 68/173 (39%), Positives = 98/173 (56%)
Frame = +3
Query: 9 LAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIV 188
L KE+ +++ DRD LR VF TG++K+ L N+ R+IWNA++IF + +D++P +I+
Sbjct: 451 LDKEFDRVRSDRDTLR-SVFPTGDSKVVLPCNLMRMIWNAQKIFHINTRQPTDINPLRII 509
Query: 189 RGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQV 368
GV+ L R ++ ++ LS AQ NATLL
Sbjct: 510 EGVQDLSKRLMIVKGEDP---------------------------LSRQAQENATLLLNC 542
Query: 369 HVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIG 527
HVR++L ++ V E RL+ +AF WLL EIE RF A+ GEMVGA AAQS+G
Sbjct: 543 HVRSTLCARRVTEEFRLSLQAFEWLLGEIEARFNYAIVHPGEMVGALAAQSLG 595
[245][TOP]
>UniRef100_C1H3Q4 DNA-directed RNA polymerase n=1 Tax=Paracoccidioides brasiliensis
Pb01 RepID=C1H3Q4_PARBA
Length = 1748
Score = 115 bits (287), Expect = 3e-24
Identities = 73/180 (40%), Positives = 104/180 (57%)
Frame = +3
Query: 9 LAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIV 188
L +EW QL KDR F+R K + + L +N++R++ +AK IF +R+ SDL P++++
Sbjct: 958 LDEEWEQLLKDRAFMRAAA-KEDDEMMQLPINVQRILESAKTIFRIREGAISDLHPAEVI 1016
Query: 189 RGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQV 368
V LL R V+ D D I+RE AQ +ATLLF+
Sbjct: 1017 PQVRALLDRLVVVRGD-----DVISRE----------------------AQESATLLFKA 1049
Query: 369 HVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMT 548
+R+ LA + +++E+ L + AF +L IENRF +A+A GEMVG AAQSIGEPATQMT
Sbjct: 1050 QLRSRLAFRRLVTEYSLNKLAFQHVLGAIENRFSRAMANPGEMVGVLAAQSIGEPATQMT 1109
[246][TOP]
>UniRef100_C1GHL1 DNA-directed RNA polymerase n=1 Tax=Paracoccidioides brasiliensis
Pb18 RepID=C1GHL1_PARBD
Length = 1746
Score = 115 bits (287), Expect = 3e-24
Identities = 73/180 (40%), Positives = 104/180 (57%)
Frame = +3
Query: 9 LAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIV 188
L +EW QL KDR F+R K + + L +N++R++ +AK IF +R+ SDL P++++
Sbjct: 952 LDEEWEQLLKDRAFMRTAA-KEDDEMMQLPINVQRILESAKTIFRIREGAISDLHPAEVI 1010
Query: 189 RGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQV 368
V LL R V+ D D I+RE AQ +ATLLF+
Sbjct: 1011 PQVRALLDRLVVVRGD-----DVISRE----------------------AQESATLLFKA 1043
Query: 369 HVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMT 548
+R+ LA + +++E+ L + AF +L IENRF +A+A GEMVG AAQSIGEPATQMT
Sbjct: 1044 QLRSRLAFRRLVTEYSLNKLAFQHVLGAIENRFSRAMANPGEMVGVLAAQSIGEPATQMT 1103
[247][TOP]
>UniRef100_C0SE75 DNA-directed RNA polymerase n=1 Tax=Paracoccidioides brasiliensis
Pb03 RepID=C0SE75_PARBP
Length = 2106
Score = 115 bits (287), Expect = 3e-24
Identities = 73/180 (40%), Positives = 104/180 (57%)
Frame = +3
Query: 9 LAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIV 188
L +EW QL KDR F+R K + + L +N++R++ +AK IF +R+ SDL P++++
Sbjct: 952 LDEEWEQLLKDRAFMRTAA-KEDDEMMQLPINVQRILESAKTIFRIREGAISDLHPAEVI 1010
Query: 189 RGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQV 368
V LL R V+ D D I+RE AQ +ATLLF+
Sbjct: 1011 PQVRALLDRLVVVRGD-----DVISRE----------------------AQESATLLFKA 1043
Query: 369 HVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMT 548
+R+ LA + +++E+ L + AF +L IENRF +A+A GEMVG AAQSIGEPATQMT
Sbjct: 1044 QLRSRLAFRRLVTEYSLNKLAFQHVLGAIENRFSRAMANPGEMVGVLAAQSIGEPATQMT 1103
[248][TOP]
>UniRef100_A1YIB8 DNA-directed RNA polymerase (Fragment) n=1 Tax=Gigaspora gigantea
RepID=A1YIB8_9GLOM
Length = 1039
Score = 115 bits (287), Expect = 3e-24
Identities = 67/181 (37%), Positives = 105/181 (58%), Gaps = 2/181 (1%)
Frame = +3
Query: 3 ELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQN--DRSDLSP 176
E + +E+ QLK+DR+ L+ ++F G+ K PL VNI+RLI NA++ F++R + +DL
Sbjct: 886 EKIVEEYVQLKRDREMLQRDIFTNGDNKWPLPVNIKRLIKNAQQKFNIRPSRWTTTDLQY 945
Query: 177 SKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATL 356
++ VE ++ R V+ ++ ++S AQ NAT
Sbjct: 946 IDVINSVEEVMSRLVVVKGND---------------------------QISHEAQTNATT 978
Query: 357 LFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPA 536
LF++ +R+ LAS+ V+ E L +A W+L E+E+RF+++L GEMVG AAQSIGEPA
Sbjct: 979 LFKILLRSWLASRRVIEEFHLNSQALKWVLGEVESRFRKSLVSPGEMVGTVAAQSIGEPA 1038
Query: 537 T 539
T
Sbjct: 1039 T 1039
[249][TOP]
>UniRef100_A1YIB5 DNA-directed RNA polymerase (Fragment) n=1 Tax=Mucor hiemalis
RepID=A1YIB5_9FUNG
Length = 1009
Score = 115 bits (287), Expect = 3e-24
Identities = 70/177 (39%), Positives = 97/177 (54%)
Frame = +3
Query: 9 LAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIV 188
L E+ QL +DR+ LR +FK G+ K PL VN+ RLI N+++IF + SD+ P +IV
Sbjct: 860 LDHEFYQLTEDRNKLRTNIFKNGDDKWPLPVNLTRLITNSQQIFHIDPRKPSDIHPLQIV 919
Query: 189 RGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQV 368
GV L R V+ + ++S Q NATLLF +
Sbjct: 920 DGVNALAQRLLVVRGSD---------------------------KISNETQKNATLLFGI 952
Query: 369 HVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPAT 539
+R++ + K V+ E LT +AF W+L EIE+RF ++ GEMVG AAQSIGEPAT
Sbjct: 953 LLRSTFSVKRVVEEFHLTSQAFEWILGEIESRFLTSIVAPGEMVGTIAAQSIGEPAT 1009
[250][TOP]
>UniRef100_Q2PYS1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Basidiobolus ranarum
RepID=Q2PYS1_9FUNG
Length = 1015
Score = 114 bits (286), Expect = 4e-24
Identities = 68/173 (39%), Positives = 97/173 (56%)
Frame = +3
Query: 6 LLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKI 185
+L +E+ QL DR LR +F +G+ PL N++RL+WNA+ IF + + S+L P +I
Sbjct: 870 MLDEEYRQLCDDRRVLREFIFTSGDQAWPLPGNLKRLVWNAQNIFHIDKRKPSNLHPLQI 929
Query: 186 VRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQ 365
+ GV+LL+ R V+ + +LS AQLNATLL+Q
Sbjct: 930 IEGVKLLIDRLVVVRGSD---------------------------KLSNEAQLNATLLYQ 962
Query: 366 VHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSI 524
+R++L++K VL + L +AF W+L EIE RFQ A GEMVG AAQSI
Sbjct: 963 CLLRSTLSTKRVLEDFHLNAQAFEWILGEIETRFQTAQVAPGEMVGTVAAQSI 1015