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[1][TOP]
>UniRef100_O04142 DNA-directed RNA polymerase (Fragment) n=1 Tax=Porphyra yezoensis
RepID=O04142_PORYE
Length = 1685
Score = 154 bits (388), Expect = 4e-36
Identities = 92/134 (68%), Positives = 97/134 (72%), Gaps = 6/134 (4%)
Frame = +2
Query: 2 LTEPDLHLQESSNSPYLSQAALNDIHSG----GDVTELL--AKEWAQLKKDRDFLRHEVF 163
LTEPDLHLQ L G G V++ + A+E +L R F
Sbjct: 829 LTEPDLHLQGVVQFSVLVAGGSQRYPLGRRRRGAVSQGVGTAEEGPRLPTPRGF------ 882
Query: 164 KTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAE 343
KTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAE
Sbjct: 883 KTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAE 942
Query: 344 VDAIAREMLPPDGS 385
VDAIAREMLPPDGS
Sbjct: 943 VDAIAREMLPPDGS 956
[2][TOP]
>UniRef100_Q9AXN0 DNA-directed RNA polymerase n=1 Tax=Glaucosphaera vacuolata
RepID=Q9AXN0_9RHOD
Length = 1746
Score = 92.8 bits (229), Expect = 1e-17
Identities = 51/133 (38%), Positives = 84/133 (63%), Gaps = 15/133 (11%)
Frame = +2
Query: 14 DLHLQESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLA 193
D + E+ S YL+Q ++D+ + + + L E+AQ+K DRD L+ E+ ++ E+K PLA
Sbjct: 893 DFGIGENRRS-YLAQEVIDDVRNDPQLIKALEDEFAQIKLDRDRLQREIIRSRESKWPLA 951
Query: 194 VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLT-------------SDE 334
VNI+RLIWN K +F++RQ+ SDL+P I++GV++LL R V+ D+
Sbjct: 952 VNIDRLIWNVKTLFNIRQDSVSDLNPRDILKGVQILLSRCNVVALPPKSIKLLDEGDGDQ 1011
Query: 335 DAEVD--AIAREM 367
AEVD +++R++
Sbjct: 1012 VAEVDTNSVSRQL 1024
[3][TOP]
>UniRef100_Q9AXN1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Botryocladia
uvarioides RepID=Q9AXN1_9FLOR
Length = 1712
Score = 90.5 bits (223), Expect = 5e-17
Identities = 42/106 (39%), Positives = 70/106 (66%)
Frame = +2
Query: 26 QESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIE 205
++S PYL + I LL E+ ++++DRD LR+ + K+GEAK P+AVNI+
Sbjct: 821 KDSRGRPYLDWETCDSIRQDAQAHILLRNEFQRIREDRDLLRNFIAKSGEAKRPMAVNID 880
Query: 206 RLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAE 343
R+IWNAK+ ++R + SDL+P ++ +G+++LL RTRV+ +D +
Sbjct: 881 RIIWNAKQAHNIRPDSVSDLTPVQVWKGIKMLLKRTRVVEIGDDQD 926
[4][TOP]
>UniRef100_O09451 DNA-directed RNA polymerase (Fragment) n=1 Tax=Bonnemaisonia hamifera
RepID=O09451_9FLOR
Length = 1732
Score = 87.4 bits (215), Expect = 4e-16
Identities = 43/113 (38%), Positives = 68/113 (60%)
Frame = +2
Query: 26 QESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIE 205
Q+ PYL + + + L E+ Q++ DR LR + KTGE+K PLAVN++
Sbjct: 820 QDEKGRPYLDPNIVERVRQDAALHVELRLEFQQIEADRKLLRDYIIKTGESKRPLAVNVD 879
Query: 206 RLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIARE 364
R+IWNAK+ ++ + SDL P ++++GV +LL RTRVL ++A ++ A E
Sbjct: 880 RVIWNAKQEHNIHADSVSDLKPDQVLKGVSMLLKRTRVLVLGDEAALENAALE 932
[5][TOP]
>UniRef100_B4YT42 DNA-directed RNA polymerase (Fragment) n=1 Tax=Amphizoa lecontei
RepID=B4YT42_AMPLE
Length = 562
Score = 82.4 bits (202), Expect = 1e-14
Identities = 40/106 (37%), Positives = 66/106 (62%), Gaps = 4/106 (3%)
Frame = +2
Query: 29 ESSNSPYL----SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 196
+ SN YL ++ L + GDV L +EW QL KDR+ LR ++F TGE+K+ L
Sbjct: 385 DPSNERYLRRIFNEEILRQLMGSGDVISELEREWDQLSKDREALR-QIFPTGESKVVLPC 443
Query: 197 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
N++R+IWN ++IF + + +DLSP ++++GV LL + ++ D+
Sbjct: 444 NLQRMIWNVQKIFHINKRATTDLSPLRVIQGVRQLLQKCIIVAGDD 489
[6][TOP]
>UniRef100_B4YT35 DNA-directed RNA polymerase (Fragment) n=1 Tax=Tenomerga cinerea
RepID=B4YT35_9COLE
Length = 553
Score = 82.0 bits (201), Expect = 2e-14
Identities = 40/106 (37%), Positives = 66/106 (62%), Gaps = 4/106 (3%)
Frame = +2
Query: 29 ESSNSPYL----SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 196
+ SN YL ++ L + GDV L +EW QL KDR+ LR ++F TGE+K+ L
Sbjct: 385 DPSNERYLRRIFNEEILRQLMGSGDVISELEREWDQLTKDREALR-QIFPTGESKVVLPC 443
Query: 197 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
N++R+IWN ++IF + + +DLSP ++++GV LL + ++ D+
Sbjct: 444 NLQRMIWNVQKIFHINKRATTDLSPLRVIQGVRQLLQKCIIVAGDD 489
[7][TOP]
>UniRef100_O02459 DNA-directed RNA polymerase (Fragment) n=1 Tax=Periplaneta
americana RepID=O02459_PERAM
Length = 468
Score = 79.3 bits (194), Expect = 1e-13
Identities = 39/106 (36%), Positives = 67/106 (63%), Gaps = 4/106 (3%)
Frame = +2
Query: 29 ESSNSPYL----SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 196
+ +N YL ++ L ++ GDV L KEW QL KDR+ LR ++F +GE+K+ L
Sbjct: 308 DPTNERYLRRIFNEDILKELMGSGDVISELEKEWEQLVKDREALR-QIFPSGESKVVLPC 366
Query: 197 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
N++R+IWN ++IF + + +DLSP ++++GV LL + ++ D+
Sbjct: 367 NLQRMIWNVQKIFHINKRAPTDLSPLRVIQGVSDLLKKCIIVAGDD 412
[8][TOP]
>UniRef100_UPI0000D5670C PREDICTED: similar to GA13798-PA n=1 Tax=Tribolium castaneum
RepID=UPI0000D5670C
Length = 2007
Score = 79.0 bits (193), Expect = 2e-13
Identities = 37/106 (34%), Positives = 68/106 (64%), Gaps = 4/106 (3%)
Frame = +2
Query: 29 ESSNSPYL----SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 196
+ SN YL ++ + D+ G+V L EW QL+KDR+ LR ++F +GE+K+ L
Sbjct: 919 DPSNERYLRRVFTEEVIKDLMGSGEVISELETEWEQLQKDREALR-QIFPSGESKVVLPC 977
Query: 197 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
N++R+IWN ++IF + + +DLSP ++++GV LL++ ++ ++
Sbjct: 978 NLQRMIWNVQKIFHINKRAPTDLSPLRVIQGVRELLNKCVIVAGED 1023
[9][TOP]
>UniRef100_O02475 DNA-directed RNA polymerase (Fragment) n=1 Tax=Triops longicaudatus
RepID=O02475_9CRUS
Length = 543
Score = 78.6 bits (192), Expect = 2e-13
Identities = 41/106 (38%), Positives = 65/106 (61%), Gaps = 4/106 (3%)
Frame = +2
Query: 29 ESSNSPYL----SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 196
+ SN YL S+ D+ + G+V L EW QL +DRD LR ++F TGE K+ L
Sbjct: 383 DPSNERYLRRIFSEDVTRDLMTSGEVISELDAEWEQLSRDRDALR-QIFPTGENKVVLPC 441
Query: 197 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
N++R+IWN ++IF + + +DLSP ++V+GV LL + V+ ++
Sbjct: 442 NLQRMIWNVQKIFHINKRAPTDLSPVRVVQGVRDLLEKCVVVKGED 487
[10][TOP]
>UniRef100_UPI000179348F PREDICTED: similar to DNA-directed RNA polymerase II subunit RPB1
(RNA polymerase II subunit B1) (DNA-directed RNA
polymerase III largest subunit) n=1 Tax=Acyrthosiphon
pisum RepID=UPI000179348F
Length = 1862
Score = 77.8 bits (190), Expect = 4e-13
Identities = 36/95 (37%), Positives = 60/95 (63%)
Frame = +2
Query: 53 SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRI 232
++ L D+ D L KEW QL DRD LR E+F +GE+K+ L N++R+IWN ++I
Sbjct: 928 TEDVLKDMMGSNDTVAELEKEWEQLTNDRDTLR-EIFPSGESKVVLPCNLKRMIWNVQKI 986
Query: 233 FDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDED 337
F + + +DL+P K+V GV+ LL + ++ +++
Sbjct: 987 FHINKRGPTDLNPIKVVNGVKKLLDKCVIVAGEDE 1021
[11][TOP]
>UniRef100_UPI000051A77E PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
isoform 2 n=1 Tax=Apis mellifera RepID=UPI000051A77E
Length = 1422
Score = 77.8 bits (190), Expect = 4e-13
Identities = 40/106 (37%), Positives = 65/106 (61%), Gaps = 4/106 (3%)
Frame = +2
Query: 29 ESSNSPYLSQAALNDI----HSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 196
+ +N YL + DI G+V L +EW QL KDR LR E+F +GE+K+ L
Sbjct: 915 DPTNERYLRRIFNEDIVREMMGSGEVISELEREWEQLNKDRAVLR-EIFPSGESKVVLPC 973
Query: 197 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
N++R+IWN ++IF + + +DLSP K+++GV+ LL + ++ D+
Sbjct: 974 NLQRMIWNVQKIFHINKRAPTDLSPMKVIQGVKDLLDKCIIVAGDD 1019
[12][TOP]
>UniRef100_O02462 DNA-directed RNA polymerase (Fragment) n=1 Tax=Pedetontus saltator
RepID=O02462_9INSE
Length = 722
Score = 77.8 bits (190), Expect = 4e-13
Identities = 37/106 (34%), Positives = 66/106 (62%), Gaps = 4/106 (3%)
Frame = +2
Query: 29 ESSNSPYL----SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 196
+ +N YL ++ + ++ G+V L +EW QL+KDRD LR ++F G+ K L
Sbjct: 562 DPTNERYLRRIFNEDIMKELMGSGEVISELEREWEQLQKDRDCLR-QIFPNGDNKTVLPC 620
Query: 197 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
N++R+IWN ++IF + + +DLSP K++RGV+ LL + ++ ++
Sbjct: 621 NLQRMIWNVQKIFHINKRATTDLSPLKVIRGVQHLLSKCIIVAGED 666
[13][TOP]
>UniRef100_B4YT36 DNA-directed RNA polymerase (Fragment) n=1 Tax=Chauliognathus
opacus RepID=B4YT36_9COLE
Length = 629
Score = 77.8 bits (190), Expect = 4e-13
Identities = 38/106 (35%), Positives = 66/106 (62%), Gaps = 4/106 (3%)
Frame = +2
Query: 29 ESSNSPYLSQAALNDIH----SGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 196
+ SN YL + D+ G+V L +EW QL+KDR+ LR ++F +GE+K+ L
Sbjct: 452 DPSNERYLRRIFNEDVSRQLMGSGEVISELEREWEQLQKDREALR-QIFPSGESKVVLPC 510
Query: 197 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
N++R+IWN ++IF + + +DLSP ++++GV LL + ++ D+
Sbjct: 511 NLQRMIWNVQKIFHINKRAPTDLSPLRVIQGVRELLKKCIIVAGDD 556
[14][TOP]
>UniRef100_UPI000186D846 predicted protein n=1 Tax=Pediculus humanus corporis
RepID=UPI000186D846
Length = 1885
Score = 77.4 bits (189), Expect = 5e-13
Identities = 37/106 (34%), Positives = 67/106 (63%), Gaps = 4/106 (3%)
Frame = +2
Query: 29 ESSNSPYL----SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 196
+++N YL ++ L ++ G+V L KEW QL+KDR+ LR ++F +GE K+ L
Sbjct: 908 DATNERYLRRIFNENILKELMGSGEVISYLEKEWDQLQKDREALR-QIFPSGENKVVLPC 966
Query: 197 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
N++R+IWN ++IF + + +DLSP +++ GV LL + ++ ++
Sbjct: 967 NLQRMIWNVQKIFHINKRAPTDLSPLRVIEGVRDLLQKCVIVAGED 1012
[15][TOP]
>UniRef100_Q9NJJ2 DNA-directed RNA polymerase (Fragment) n=1 Tax=Tomocerus sp.
jcrjws1 RepID=Q9NJJ2_9HEXA
Length = 543
Score = 77.4 bits (189), Expect = 5e-13
Identities = 40/118 (33%), Positives = 68/118 (57%), Gaps = 4/118 (3%)
Frame = +2
Query: 29 ESSNSPYL----SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 196
+ +N YL ++ + DI G+V + KEW L+KDR LR ++F TGE K+ L
Sbjct: 383 DPTNERYLRRVFTEDVMRDIMGSGEVISAIEKEWEALQKDRAVLR-QIFPTGENKVVLPC 441
Query: 197 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREML 370
N++R+IWN ++IF + + +DL+P +++ GVE LL + ++ ++ A A L
Sbjct: 442 NLQRMIWNVQKIFHINKRAPTDLNPVRVIEGVEDLLKKCVIVVGEDRLSKQANANATL 499
[16][TOP]
>UniRef100_B4YT44 DNA-directed RNA polymerase (Fragment) n=1 Tax=Asaphidion yukonense
RepID=B4YT44_9CARA
Length = 562
Score = 77.4 bits (189), Expect = 5e-13
Identities = 36/106 (33%), Positives = 66/106 (62%), Gaps = 4/106 (3%)
Frame = +2
Query: 29 ESSNSPYL----SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 196
+ SN YL ++ + + GDV L +EW QL +DR+ LR ++F +GE+K+ L
Sbjct: 385 DPSNERYLRRIFNEEIIKQLMGSGDVISELEREWEQLSRDREALR-QIFPSGESKVVLPC 443
Query: 197 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
N++R+IWN ++IF + + +DLSP ++++GV LL + ++ ++
Sbjct: 444 NLQRMIWNVQKIFHINKRSPTDLSPIRVIQGVRDLLQKCVIVAGED 489
[17][TOP]
>UniRef100_Q23699 DNA-directed RNA polymerase (Fragment) n=1 Tax=Crassostrea gigas
RepID=Q23699_CRAGI
Length = 1340
Score = 77.0 bits (188), Expect = 6e-13
Identities = 40/107 (37%), Positives = 62/107 (57%)
Frame = +2
Query: 50 LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 229
LS+ + D+ L +EW QL++DRD LR +F TG++K+ L N++R+IWNA++
Sbjct: 845 LSEEVIKDLMGDALAVSQLDREWEQLREDRDILR-SIFPTGDSKVVLPCNLQRMIWNAQK 903
Query: 230 IFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREML 370
IF + + +DL P K+V GVE L R V+ + + A A L
Sbjct: 904 IFRIDTHKPTDLHPIKVVEGVEDLCKRLIVVAGGDRLSIQANANATL 950
[18][TOP]
>UniRef100_B4YT54 DNA-directed RNA polymerase (Fragment) n=2 Tax=Odontium subgenus
complex RepID=B4YT54_9CARA
Length = 473
Score = 77.0 bits (188), Expect = 6e-13
Identities = 38/106 (35%), Positives = 65/106 (61%), Gaps = 4/106 (3%)
Frame = +2
Query: 29 ESSNSPYLSQAALNDI----HSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 196
+ SN YL + DI GDV L +EW QL +DR+ LR ++F +GE+K+ L
Sbjct: 296 DPSNERYLRRIFNEDIIKQLMGSGDVISELEREWEQLSRDREALR-QIFPSGESKVVLPC 354
Query: 197 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
N++R+IWN ++IF + + +DLSP ++++GV LL + ++ ++
Sbjct: 355 NLQRMIWNVQKIFHINKRSPTDLSPIRVIQGVRDLLQKCVIVAGED 400
[19][TOP]
>UniRef100_B4YT49 DNA-directed RNA polymerase (Fragment) n=1 Tax=Bembidion
mandibulare RepID=B4YT49_9CARA
Length = 562
Score = 77.0 bits (188), Expect = 6e-13
Identities = 38/106 (35%), Positives = 65/106 (61%), Gaps = 4/106 (3%)
Frame = +2
Query: 29 ESSNSPYLSQAALNDI----HSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 196
+ SN YL + DI GDV L +EW QL +DR+ LR ++F +GE+K+ L
Sbjct: 385 DPSNERYLRRIFNEDIIKQLMGSGDVISELEREWEQLSRDREALR-QIFPSGESKVVLPC 443
Query: 197 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
N++R+IWN ++IF + + +DLSP ++++GV LL + ++ ++
Sbjct: 444 NLQRMIWNVQKIFHINKRSPTDLSPIRVIQGVRDLLQKCVIVAGED 489
[20][TOP]
>UniRef100_B4YT46 DNA-directed RNA polymerase (Fragment) n=3 Tax=Bembidion
RepID=B4YT46_9CARA
Length = 562
Score = 77.0 bits (188), Expect = 6e-13
Identities = 38/106 (35%), Positives = 65/106 (61%), Gaps = 4/106 (3%)
Frame = +2
Query: 29 ESSNSPYLSQAALNDI----HSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 196
+ SN YL + DI GDV L +EW QL +DR+ LR ++F +GE+K+ L
Sbjct: 385 DPSNERYLRRIFNEDIIKQLMGSGDVISELEREWEQLSRDREALR-QIFPSGESKVVLPC 443
Query: 197 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
N++R+IWN ++IF + + +DLSP ++++GV LL + ++ ++
Sbjct: 444 NLQRMIWNVQKIFHINKRSPTDLSPIRVIQGVRDLLQKCVIVAGED 489
[21][TOP]
>UniRef100_B4YT45 RNA polymerase II large subunit (Fragment) n=1 Tax=Sirdenus grayii
RepID=B4YT45_9CARA
Length = 227
Score = 77.0 bits (188), Expect = 6e-13
Identities = 38/106 (35%), Positives = 65/106 (61%), Gaps = 4/106 (3%)
Frame = +2
Query: 29 ESSNSPYLSQAALNDI----HSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 196
+ SN YL + DI GDV L +EW QL +DR+ LR ++F +GE+K+ L
Sbjct: 50 DPSNERYLRRIFNEDIIKQLMGSGDVISELEREWEQLSRDREALR-QIFPSGESKVVLPC 108
Query: 197 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
N++R+IWN ++IF + + +DLSP ++++GV LL + ++ ++
Sbjct: 109 NLQRMIWNVQKIFHINKRSPTDLSPIRVIQGVRDLLQKCVIVAGED 154
[22][TOP]
>UniRef100_B4YT40 DNA-directed RNA polymerase (Fragment) n=1 Tax=Dineutes sublineatus
RepID=B4YT40_9COLE
Length = 562
Score = 77.0 bits (188), Expect = 6e-13
Identities = 39/106 (36%), Positives = 65/106 (61%), Gaps = 4/106 (3%)
Frame = +2
Query: 29 ESSNSPYLSQAALNDI----HSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 196
+ SN YL + DI DV L +EW QL KDR+ LR ++F +GE+K+ L
Sbjct: 385 DPSNERYLRRIFNEDIIRQLMGSADVISELEREWEQLVKDRETLR-QIFPSGESKVVLPC 443
Query: 197 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
N++R+IWN ++IF + + ++DLSP ++++GV LL + ++ D+
Sbjct: 444 NLQRMIWNVQKIFHINKRAQTDLSPLRVIQGVRDLLQKCVIVAGDD 489
[23][TOP]
>UniRef100_B4YT34 DNA-directed RNA polymerase (Fragment) n=1 Tax=Sialis sp. ALW-2008
RepID=B4YT34_9NEOP
Length = 555
Score = 77.0 bits (188), Expect = 6e-13
Identities = 40/107 (37%), Positives = 64/107 (59%), Gaps = 5/107 (4%)
Frame = +2
Query: 29 ESSNSPYLSQAALNDI-----HSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLA 193
+ N YL + +I SGGD+ + L KEW QL KDR+ LR ++F +G+ K+ L
Sbjct: 385 DPGNERYLRRVFTEEIVRQLMASGGDLIQALEKEWDQLVKDREALR-QIFPSGDNKVVLP 443
Query: 194 VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
N++R+IWN ++IF + +DLSP +++ GV LL R ++ D+
Sbjct: 444 CNLQRMIWNVQKIFHINGRAPTDLSPLRVLDGVSELLRRCVIVAGDD 490
[24][TOP]
>UniRef100_B3FA71 RNA polymerase II largest subunit (Fragment) n=2 Tax=Pseudoperyphus
RepID=B3FA71_9CARA
Length = 227
Score = 77.0 bits (188), Expect = 6e-13
Identities = 38/106 (35%), Positives = 65/106 (61%), Gaps = 4/106 (3%)
Frame = +2
Query: 29 ESSNSPYLSQAALNDI----HSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 196
+ SN YL + DI GDV L +EW QL +DR+ LR ++F +GE+K+ L
Sbjct: 50 DPSNERYLRRIFNEDIIKQLMGSGDVISELEREWEQLSRDREALR-QIFPSGESKVVLPC 108
Query: 197 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
N++R+IWN ++IF + + +DLSP ++++GV LL + ++ ++
Sbjct: 109 NLQRMIWNVQKIFHINKRSPTDLSPIRVIQGVRDLLQKCVIVAGED 154
[25][TOP]
>UniRef100_B3FA52 RNA polymerase II largest subunit (Fragment) n=1 Tax=Bembidion
levettei RepID=B3FA52_9CARA
Length = 226
Score = 77.0 bits (188), Expect = 6e-13
Identities = 38/106 (35%), Positives = 65/106 (61%), Gaps = 4/106 (3%)
Frame = +2
Query: 29 ESSNSPYLSQAALNDI----HSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 196
+ SN YL + DI GDV L +EW QL +DR+ LR ++F +GE+K+ L
Sbjct: 49 DPSNERYLRRIFNEDIIKQLMGSGDVISELEREWEQLSRDREALR-QIFPSGESKVVLPC 107
Query: 197 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
N++R+IWN ++IF + + +DLSP ++++GV LL + ++ ++
Sbjct: 108 NLQRMIWNVQKIFHINKRSPTDLSPIRVIQGVRDLLQKCVIVAGED 153
[26][TOP]
>UniRef100_B3FA50 RNA polymerase II largest subunit (Fragment) n=1 Tax=Bembidion
coxendix RepID=B3FA50_9CARA
Length = 225
Score = 77.0 bits (188), Expect = 6e-13
Identities = 38/106 (35%), Positives = 65/106 (61%), Gaps = 4/106 (3%)
Frame = +2
Query: 29 ESSNSPYLSQAALNDI----HSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 196
+ SN YL + DI GDV L +EW QL +DR+ LR ++F +GE+K+ L
Sbjct: 48 DPSNERYLRRIFNEDIIKQLMGSGDVXSELEREWEQLSRDREALR-QIFPSGESKVVLPC 106
Query: 197 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
N++R+IWN ++IF + + +DLSP ++++GV LL + ++ ++
Sbjct: 107 NLQRMIWNVQKIFHINKRSPTDLSPIRVIQGVRDLLQKCVIVAGED 152
[27][TOP]
>UniRef100_B3FA46 RNA polymerase II largest subunit (Fragment) n=1 Tax=Bembidion
bifossulatum RepID=B3FA46_9CARA
Length = 227
Score = 77.0 bits (188), Expect = 6e-13
Identities = 38/106 (35%), Positives = 65/106 (61%), Gaps = 4/106 (3%)
Frame = +2
Query: 29 ESSNSPYLSQAALNDI----HSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 196
+ SN YL + DI GDV L +EW QL +DR+ LR ++F +GE+K+ L
Sbjct: 50 DPSNERYLRRIFNEDIIKQLMGSGDVISELEREWEQLSRDREALR-QIFPSGESKVVLPC 108
Query: 197 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
N++R+IWN ++IF + + +DLSP ++++GV LL + ++ ++
Sbjct: 109 NLQRMIWNVQKIFHINKRSPTDLSPIRVIQGVRDLLQKCVIVAGED 154
[28][TOP]
>UniRef100_B3FA45 RNA polymerase II largest subunit (Fragment) n=1 Tax=Bembidion
balli RepID=B3FA45_9CARA
Length = 220
Score = 77.0 bits (188), Expect = 6e-13
Identities = 38/106 (35%), Positives = 65/106 (61%), Gaps = 4/106 (3%)
Frame = +2
Query: 29 ESSNSPYLSQAALNDI----HSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 196
+ SN YL + DI GDV L +EW QL +DR+ LR ++F +GE+K+ L
Sbjct: 43 DPSNERYLRRIFNEDIIKQLMGSGDVISELEREWEQLSRDREALR-QIFPSGESKVVLPC 101
Query: 197 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
N++R+IWN ++IF + + +DLSP ++++GV LL + ++ ++
Sbjct: 102 NLQRMIWNVQKIFHINKRSPTDLSPIRVIQGVRDLLQKCVIVAGED 147
[29][TOP]
>UniRef100_B3FA43 RNA polymerase II largest subunit (Fragment) n=16 Tax=Bembidion
RepID=B3FA43_9CARA
Length = 227
Score = 77.0 bits (188), Expect = 6e-13
Identities = 38/106 (35%), Positives = 65/106 (61%), Gaps = 4/106 (3%)
Frame = +2
Query: 29 ESSNSPYLSQAALNDI----HSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 196
+ SN YL + DI GDV L +EW QL +DR+ LR ++F +GE+K+ L
Sbjct: 50 DPSNERYLRRIFNEDIIKQLMGSGDVISELEREWEQLSRDREALR-QIFPSGESKVVLPC 108
Query: 197 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
N++R+IWN ++IF + + +DLSP ++++GV LL + ++ ++
Sbjct: 109 NLQRMIWNVQKIFHINKRSPTDLSPIRVIQGVRDLLQKCVIVAGED 154
[30][TOP]
>UniRef100_B4YT41 DNA-directed RNA polymerase (Fragment) n=1 Tax=Macrogyrus oblongus
RepID=B4YT41_9COLE
Length = 554
Score = 76.6 bits (187), Expect = 8e-13
Identities = 39/106 (36%), Positives = 64/106 (60%), Gaps = 4/106 (3%)
Frame = +2
Query: 29 ESSNSPYLSQAALNDI----HSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 196
+ SN YL + DI GDV L EW QL++DR+ LR ++F GE+K+ L
Sbjct: 385 DPSNERYLRRIFNEDIIRQLMGSGDVISELELEWEQLRRDREALR-QIFPNGESKVVLPC 443
Query: 197 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
N++R+IWN ++IF + + +DLSP ++++GV LL R ++ ++
Sbjct: 444 NLQRMIWNVQKIFHINKRAPTDLSPLRVIQGVRELLQRCVIVAGED 489
[31][TOP]
>UniRef100_O02450 DNA-directed RNA polymerase (Fragment) n=1 Tax=Limulus polyphemus
RepID=O02450_LIMPO
Length = 778
Score = 76.3 bits (186), Expect = 1e-12
Identities = 43/111 (38%), Positives = 67/111 (60%), Gaps = 4/111 (3%)
Frame = +2
Query: 32 SSNSPYLSQAALNDIHSG--GDVTEL--LAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVN 199
+SN YL + D+ G T L L KEW +LK DR+ LR +F TG++K+ L N
Sbjct: 454 ASNERYLRRIFTEDVVRDLMGSATALSELEKEWEKLKHDRELLR-AIFPTGDSKVVLPCN 512
Query: 200 IERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352
++R+IW+A++IF V Q +DLSP K++ GVE L+ + V+ ++ + A
Sbjct: 513 LQRMIWSAQKIFHVNQRAPTDLSPLKVIGGVEELVKKLVVVPGEDRLSIQA 563
[32][TOP]
>UniRef100_B4YT39 RNA polymerase II large subunit (Fragment) n=1 Tax=Pterostichus
melanarius RepID=B4YT39_PTEME
Length = 227
Score = 76.3 bits (186), Expect = 1e-12
Identities = 38/106 (35%), Positives = 65/106 (61%), Gaps = 4/106 (3%)
Frame = +2
Query: 29 ESSNSPYLSQAALNDI----HSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 196
+ SN YL + DI GDV L +EW QL +DR+ LR ++F +GE+K+ L
Sbjct: 50 DPSNERYLRRIFNEDIIRQLMGSGDVISELEREWEQLTRDREALR-QIFPSGESKVVLPC 108
Query: 197 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
N++R+IWN ++IF + + +DLSP ++++GV LL + ++ ++
Sbjct: 109 NLQRMIWNVQKIFHINKRSPTDLSPIRVIQGVRDLLKKCVIVAGED 154
[33][TOP]
>UniRef100_A9QMT2 RNA polymerase 2 (Fragment) n=1 Tax=Pellioditis typica
RepID=A9QMT2_9PELO
Length = 488
Score = 76.3 bits (186), Expect = 1e-12
Identities = 35/102 (34%), Positives = 64/102 (62%)
Frame = +2
Query: 29 ESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIER 208
E + + Y ++ + ++ + + + KEWAQL++DR LR ++F TG AK+ L N++R
Sbjct: 118 EKTLTKYYTEDVVRELQGSSESLKEVEKEWAQLEEDRRLLR-KIFPTGNAKIVLPCNLQR 176
Query: 209 LIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
LIWNA++IF V +DL+P +++ GV L + +++ D+
Sbjct: 177 LIWNAQKIFHVETRKPTDLNPLRVIEGVRELSEKLVIVSGDD 218
[34][TOP]
>UniRef100_A9QME0 DNA-directed RNA polymerase (Fragment) n=1 Tax=Pellioditis typica
RepID=A9QME0_9PELO
Length = 633
Score = 76.3 bits (186), Expect = 1e-12
Identities = 35/102 (34%), Positives = 64/102 (62%)
Frame = +2
Query: 29 ESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIER 208
E + + Y ++ + ++ + + + KEWAQL++DR LR ++F TG AK+ L N++R
Sbjct: 132 EKTLTKYYTEDVVRELQGSSESLKEVEKEWAQLEEDRRLLR-KIFPTGNAKIVLPCNLQR 190
Query: 209 LIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
LIWNA++IF V +DL+P +++ GV L + +++ D+
Sbjct: 191 LIWNAQKIFHVETRKPTDLNPLRVIEGVRELSEKLVIVSGDD 232
[35][TOP]
>UniRef100_A8BDP1 RNA polymerase II largest subunit (Fragment) n=1 Tax=Paragordius
varius RepID=A8BDP1_PARVA
Length = 467
Score = 75.9 bits (185), Expect = 1e-12
Identities = 41/117 (35%), Positives = 71/117 (60%), Gaps = 4/117 (3%)
Frame = +2
Query: 14 DLHLQESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLA 193
DL+L E + YL++ + D+ + L +EW ++K+D+ LR ++F TG++K+ L
Sbjct: 62 DLNLNERTLKRYLNEDIVKDLIANTHCLTELEREWERIKEDQTLLR-QIFPTGDSKVVLP 120
Query: 194 VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTS----DEDAEVDA 352
N++R+IWNA++IF + SDL P K+VRGV+ L + V+ + A++DA
Sbjct: 121 CNLQRIIWNAQKIFRINPRLPSDLHPLKVVRGVQELSEKLIVVKGVDRISQRAQLDA 177
[36][TOP]
>UniRef100_B4YT43 DNA-directed RNA polymerase (Fragment) n=1 Tax=Laccophilus pictus
RepID=B4YT43_9DYTI
Length = 562
Score = 75.5 bits (184), Expect = 2e-12
Identities = 38/106 (35%), Positives = 64/106 (60%), Gaps = 4/106 (3%)
Frame = +2
Query: 29 ESSNSPYLSQAALNDI----HSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 196
++SN YL + D+ GDV L EW QL+KDR+ LR ++F +GE+ + L
Sbjct: 385 DASNEKYLRRVFNEDVIKLMMGSGDVISELELEWDQLQKDREALR-QIFPSGESNVVLPC 443
Query: 197 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
N++R+IWN ++IF + + +DLSP ++++GV LL R ++ +
Sbjct: 444 NLQRMIWNVQKIFHINKRAPTDLSPLRVIQGVRELLQRCIIVAGTD 489
[37][TOP]
>UniRef100_UPI000179338A PREDICTED: similar to DNA-directed RNA polymerase II subunit RPB1
(RNA polymerase II subunit B1) (DNA-directed RNA
polymerase III largest subunit) n=1 Tax=Acyrthosiphon
pisum RepID=UPI000179338A
Length = 1862
Score = 75.1 bits (183), Expect = 2e-12
Identities = 34/95 (35%), Positives = 60/95 (63%)
Frame = +2
Query: 53 SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRI 232
++ L D+ D L +EW QL DRD LR E+F +GE+K+ L N++R+IWN ++I
Sbjct: 928 NEDVLKDLTGSNDSVTELEREWEQLTTDRDTLR-EIFPSGESKVVLPCNLKRMIWNVQKI 986
Query: 233 FDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDED 337
F + + ++DL+P K++ GV+ LL + ++ ++
Sbjct: 987 FHINKRGQTDLNPVKVINGVKELLDKCVIVAGGDE 1021
[38][TOP]
>UniRef100_Q9BNE5 RNA polymerase II largest subunit (Fragment) n=1 Tax=Branchia sp.
'Ere' RepID=Q9BNE5_9ARAC
Length = 232
Score = 75.1 bits (183), Expect = 2e-12
Identities = 36/112 (32%), Positives = 68/112 (60%), Gaps = 4/112 (3%)
Frame = +2
Query: 29 ESSNSPYL----SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 196
++SN Y+ ++ + ++ L KEW +LKKDR+ LR +F TG++K+ +
Sbjct: 72 DASNERYMHRIFTEEVVRELMGSAMALSELEKEWERLKKDREVLR-TIFPTGDSKVVMPC 130
Query: 197 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352
N++R+IWNA++IF V ++DLSP + ++GVE L+ + ++ ++ + A
Sbjct: 131 NLQRMIWNAQKIFHVNTRSQTDLSPLRTIKGVEDLVKKLVIVPGEDRLSIQA 182
[39][TOP]
>UniRef100_Q9BNE0 DNA-directed RNA polymerase (Fragment) n=1 Tax=Hadrurus arizonensis
RepID=Q9BNE0_HADAR
Length = 543
Score = 75.1 bits (183), Expect = 2e-12
Identities = 42/112 (37%), Positives = 67/112 (59%), Gaps = 4/112 (3%)
Frame = +2
Query: 29 ESSNSPYLSQAALNDI--HSGGDVTEL--LAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 196
+ SN YL + D+ G T L L +EW +L+KDR LR +F TG++K+ L
Sbjct: 383 DPSNERYLRRIFTEDVVRELMGSATALSELEREWERLEKDRRVLR-SIFPTGDSKVVLPC 441
Query: 197 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352
N++R+IWNA++IF V +DLSP ++V+GVE L+ + V+ ++ + A
Sbjct: 442 NLQRMIWNAQKIFHVNLRSATDLSPLRVVQGVEELVKKLVVVPGEDRLSIQA 493
[40][TOP]
>UniRef100_B4YT37 DNA-directed RNA polymerase (Fragment) n=1 Tax=Scaphinotus petersi
RepID=B4YT37_9CARA
Length = 369
Score = 75.1 bits (183), Expect = 2e-12
Identities = 38/106 (35%), Positives = 64/106 (60%), Gaps = 4/106 (3%)
Frame = +2
Query: 29 ESSNSPYLSQAALNDI----HSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 196
+ SN YL + DI GDV L +EW QL +DR+ LR ++F +GE+K+ L
Sbjct: 192 DPSNERYLRRIFNEDIIRQLMGSGDVISELEREWEQLSRDREALR-QIFPSGESKVVLPC 250
Query: 197 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
N++R+IWN ++IF + + +DLSP ++++GV LL + ++ +
Sbjct: 251 NLQRMIWNVQKIFHINKRAPTDLSPIRVIQGVRDLLQKCVIVAGKD 296
[41][TOP]
>UniRef100_B4YT48 DNA-directed RNA polymerase (Fragment) n=2 Tax=Notaphus
RepID=B4YT48_9CARA
Length = 562
Score = 74.7 bits (182), Expect = 3e-12
Identities = 37/106 (34%), Positives = 64/106 (60%), Gaps = 4/106 (3%)
Frame = +2
Query: 29 ESSNSPYLSQAALNDI----HSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 196
+ SN YL + DI DV L +EW QL +DR+ LR ++F +GE+K+ L
Sbjct: 385 DPSNERYLRRIFNEDIIKQLMGSSDVISELEREWEQLSRDREALR-QIFPSGESKVVLPC 443
Query: 197 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
N++R+IWN ++IF + + +DLSP ++++GV LL + ++ ++
Sbjct: 444 NLQRMIWNVQKIFHINKRSPTDLSPIRVIQGVRDLLQKCVIVAGED 489
[42][TOP]
>UniRef100_B3FA44 RNA polymerase II largest subunit (Fragment) n=3 Tax=Odontium
subgenus complex RepID=B3FA44_9CARA
Length = 227
Score = 74.7 bits (182), Expect = 3e-12
Identities = 37/106 (34%), Positives = 64/106 (60%), Gaps = 4/106 (3%)
Frame = +2
Query: 29 ESSNSPYLSQAALNDI----HSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 196
+ SN YL + DI GDV L + W QL +DR+ LR ++F +GE+K+ L
Sbjct: 50 DPSNERYLRRIFNEDIIKQLMGSGDVISELERXWEQLSRDREALR-QIFPSGESKVVLPC 108
Query: 197 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
N++R+IWN ++IF + + +DLSP ++++GV LL + ++ ++
Sbjct: 109 NLQRMIWNVQKIFHINKRSPTDLSPIRVIQGVRDLLQKCVIVAGED 154
[43][TOP]
>UniRef100_O02478 RNA polymerase II largest subunit (Fragment) n=1 Tax=Vonones ornata
RepID=O02478_9ARAC
Length = 194
Score = 74.3 bits (181), Expect = 4e-12
Identities = 41/112 (36%), Positives = 67/112 (59%), Gaps = 4/112 (3%)
Frame = +2
Query: 29 ESSNSPYLSQAALNDI--HSGGDVTEL--LAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 196
+++N YL + D+ G T L L +EW +LK+DR LR VF TG++K+ +
Sbjct: 62 DATNERYLRRIFTEDVVRELMGSSTALSELEREWERLKEDRKMLRL-VFTTGDSKVVMPC 120
Query: 197 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352
N+ R+IWNA++IF V SDLSP K+++GVE L+ + ++ ++ + A
Sbjct: 121 NLSRMIWNAQKIFHVNLRSPSDLSPFKVIQGVEKLIKKLIIVPGEDRLSIQA 172
[44][TOP]
>UniRef100_O02452 DNA-directed RNA polymerase (Fragment) n=1 Tax=Mastigoproctus
giganteus RepID=O02452_MASGI
Length = 887
Score = 74.3 bits (181), Expect = 4e-12
Identities = 36/100 (36%), Positives = 61/100 (61%)
Frame = +2
Query: 53 SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRI 232
++ + D+ L KEW +LKKDR+ LR VF TG++K+ L N++R+IWNA++I
Sbjct: 574 TEDVVRDLLGSATALSELEKEWERLKKDREVLR-TVFPTGDSKVVLPCNLQRMIWNAQKI 632
Query: 233 FDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352
F V +DLSP +++ GVE L+ + ++ ++ + A
Sbjct: 633 FRVNARAPTDLSPFRVIHGVEDLVKKLIIVPGEDRLSIQA 672
[45][TOP]
>UniRef100_B3FA42 RNA polymerase II largest subunit (Fragment) n=1 Tax=Bembidion
californicum RepID=B3FA42_9CARA
Length = 227
Score = 73.9 bits (180), Expect = 5e-12
Identities = 36/106 (33%), Positives = 64/106 (60%), Gaps = 4/106 (3%)
Frame = +2
Query: 29 ESSNSPYLSQAALNDI----HSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 196
+ SN YL + DI GDV L + W QL ++R+ LR ++F +GE+K+ L
Sbjct: 50 DPSNERYLRRIFNEDIIKQLMGSGDVISELERXWEQLSRBREALR-QIFPSGESKVVLPC 108
Query: 197 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
N++R+IWN ++IF + + +DLSP ++++GV LL + ++ ++
Sbjct: 109 NLQRMIWNVQKIFHINKRSPTDLSPIRVIQGVRDLLQKCVIVAGED 154
[46][TOP]
>UniRef100_A9QME8 RNA polymerase 2 (Fragment) n=1 Tax=Choriorhabditis dudichi
RepID=A9QME8_9BILA
Length = 252
Score = 73.9 bits (180), Expect = 5e-12
Identities = 40/115 (34%), Positives = 64/115 (55%), Gaps = 3/115 (2%)
Frame = +2
Query: 2 LTEPDLHLQESSNS---PYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTG 172
L E D L S Y + D+ + + +EW QL++DR LR ++F TG
Sbjct: 93 LFEKDFKLDLSDEKMLKKYYKDEVVRDLQGSSEALNEVEEEWRQLEEDRRLLR-KIFPTG 151
Query: 173 EAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDED 337
+AK+ L N++RLIWNA++IF V +DL+P +++ GV+ L + ++ S ED
Sbjct: 152 DAKIVLPCNLQRLIWNAQKIFHVHMRQTTDLNPVRVIEGVK-ELSKKLIIVSGED 205
[47][TOP]
>UniRef100_A9QMP5 DNA-directed RNA polymerase (Fragment) n=1 Tax=Oscheius insectivora
RepID=A9QMP5_9BILA
Length = 474
Score = 73.2 bits (178), Expect = 9e-12
Identities = 34/90 (37%), Positives = 57/90 (63%)
Frame = +2
Query: 65 LNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVR 244
+ D+ V E + KEW QL++DR LR ++F TG+AK+ L N++RLIWNA++IF V
Sbjct: 137 IRDLQGDSQVMEEVEKEWDQLEEDRRLLR-KIFPTGDAKIVLPCNLQRLIWNAQKIFHVE 195
Query: 245 QNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
+ L+P ++++GV L + ++ D+
Sbjct: 196 TRQPTSLNPLRVIQGVRELSEKLVIVCGDD 225
[48][TOP]
>UniRef100_Q6GYH6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Prodontorhabditis
wirthi RepID=Q6GYH6_9BILA
Length = 630
Score = 72.8 bits (177), Expect = 1e-11
Identities = 35/102 (34%), Positives = 61/102 (59%)
Frame = +2
Query: 29 ESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIER 208
E + Y ++ + D+ S + + EWAQL++DR LR ++F TG AK+ L N++R
Sbjct: 138 EKALKKYYTEDVVRDLVSSTEAFREVEAEWAQLEEDRQLLR-KIFPTGNAKIVLPCNLQR 196
Query: 209 LIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
LIWNA++IF V + L+P K+++GV L + ++ ++
Sbjct: 197 LIWNAQKIFHVEMRKPTTLNPMKVIQGVRELSKKLIIVNGED 238
[49][TOP]
>UniRef100_B7PJA3 DNA-directed RNA polymerase (Fragment) n=1 Tax=Ixodes scapularis
RepID=B7PJA3_IXOSC
Length = 1937
Score = 72.8 bits (177), Expect = 1e-11
Identities = 33/83 (39%), Positives = 57/83 (68%)
Frame = +2
Query: 104 LAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIV 283
L KEW +LK+DR+ LR +F TG++K+ L N++R++WNA++IF V +DLSP ++V
Sbjct: 952 LEKEWERLKRDREALR-TIFPTGDSKVVLPCNLQRMLWNAQKIFRVNLRSPTDLSPLRVV 1010
Query: 284 RGVELLLHRTRVLTSDEDAEVDA 352
+GVE L+ + ++ ++ + A
Sbjct: 1011 QGVEELVKKLVIVPGEDHLSIQA 1033
[50][TOP]
>UniRef100_Q2PYS3 DNA-directed RNA polymerase (Fragment) n=1 Tax=Cladochytrium
replicatum RepID=Q2PYS3_9FUNG
Length = 981
Score = 72.4 bits (176), Expect = 1e-11
Identities = 41/103 (39%), Positives = 63/103 (61%), Gaps = 1/103 (0%)
Frame = +2
Query: 65 LNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEA-KLPLAVNIERLIWNAKRIFDV 241
+ D+ +V ELL E+ QL +DR LR E+F + LPL VN++R+IW A+++FD
Sbjct: 825 VKDVMESMEVQELLHNEYDQLYEDRRVLREEIFAAEHSFSLPLPVNLKRVIWKAQKLFDR 884
Query: 242 RQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREML 370
R+ +SDL P I++ V+ LL RT V+ ++ V+A A L
Sbjct: 885 RK--QSDLHPRHIIKSVQELLERTVVIRGKDELSVEAQANATL 925
[51][TOP]
>UniRef100_Q2PYQ9 DNA-directed RNA polymerase (Fragment) n=1 Tax=Endogone pisiformis
RepID=Q2PYQ9_9FUNG
Length = 845
Score = 72.0 bits (175), Expect = 2e-11
Identities = 38/93 (40%), Positives = 55/93 (59%)
Frame = +2
Query: 74 IHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQND 253
I DV LL +E+ QL++DRD L +FKTG+ K PL N++RLI NA++IF + +
Sbjct: 691 IEGNEDVQGLLDEEFQQLQEDRDTLSKFIFKTGDGKWPLPTNLQRLITNAQQIFHIDRRK 750
Query: 254 RSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352
SDL+P I+ GV L V+ + V+A
Sbjct: 751 PSDLNPVNIIEGVRKLSEELLVVRGSDKISVEA 783
[52][TOP]
>UniRef100_A9U396 DNA-directed RNA polymerase n=1 Tax=Physcomitrella patens subsp.
patens RepID=A9U396_PHYPA
Length = 1742
Score = 71.6 bits (174), Expect = 3e-11
Identities = 38/102 (37%), Positives = 60/102 (58%)
Frame = +2
Query: 47 YLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAK 226
Y+S A DI + ++ + E ++L+ DR + E+ TGE+ PL VN++RLIWNA+
Sbjct: 931 YMSAEAAEDIKTIQEIRNVFDAEVSKLEADRRQMGLEIAPTGESNWPLPVNLKRLIWNAQ 990
Query: 227 RIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352
+IF V SD+ P +IV VE L R RV+ ++ ++A
Sbjct: 991 KIFKVDLRKSSDMHPMEIVEAVENLQERLRVVPGNDQISMEA 1032
[53][TOP]
>UniRef100_B4MAN9 DNA-directed RNA polymerase n=1 Tax=Drosophila virilis
RepID=B4MAN9_DROVI
Length = 1889
Score = 71.6 bits (174), Expect = 3e-11
Identities = 36/104 (34%), Positives = 62/104 (59%), Gaps = 4/104 (3%)
Frame = +2
Query: 35 SNSPYLSQAALNDI----HSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNI 202
SN Y+ + +D+ D + L EW +L DRD LR +F G++K+ L N+
Sbjct: 917 SNERYMRRVFTDDVIKEMTDSSDAIQELESEWDRLVSDRDNLR-TIFPNGDSKVVLPCNL 975
Query: 203 ERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
+R+IWN ++IF + + +DLSP +++RGV+ LL R ++T ++
Sbjct: 976 QRMIWNVQKIFHINKRLPTDLSPMRVIRGVKGLLERCVIVTGND 1019
[54][TOP]
>UniRef100_B4L732 DNA-directed RNA polymerase n=1 Tax=Drosophila mojavensis
RepID=B4L732_DROMO
Length = 1889
Score = 71.6 bits (174), Expect = 3e-11
Identities = 36/104 (34%), Positives = 62/104 (59%), Gaps = 4/104 (3%)
Frame = +2
Query: 35 SNSPYLSQAALNDI----HSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNI 202
SN Y+ + +D+ D + L EW +L DRD LR +F G++K+ L N+
Sbjct: 917 SNERYMRKVFTDDVIKEMTDSSDAIQELESEWDRLVSDRDNLR-TIFPNGDSKVVLPCNL 975
Query: 203 ERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
+R+IWN ++IF + + +DLSP +++RGV+ LL R ++T ++
Sbjct: 976 QRMIWNVQKIFHINKRLPTDLSPMRVIRGVKGLLERCVIVTGND 1019
[55][TOP]
>UniRef100_A9QMG2 RNA polymerase 2 (Fragment) n=1 Tax=Oscheius dolichura
RepID=A9QMG2_9BILA
Length = 273
Score = 71.6 bits (174), Expect = 3e-11
Identities = 34/90 (37%), Positives = 56/90 (62%)
Frame = +2
Query: 65 LNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVR 244
+ D+ D E + EWAQL++DR LR ++F TGE+K L N++RLIWNA++IF V
Sbjct: 134 IRDLQGSPDAIEEVENEWAQLEEDRRLLR-KIFSTGESKCVLPCNLQRLIWNAQKIFHVE 192
Query: 245 QNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
+ + L+P ++RGV L + ++ ++
Sbjct: 193 KREPVCLNPLNVIRGVRSLSEKLIIVGGED 222
[56][TOP]
>UniRef100_A9QMG1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Oscheius
dolichuroides RepID=A9QMG1_9BILA
Length = 629
Score = 71.6 bits (174), Expect = 3e-11
Identities = 34/90 (37%), Positives = 56/90 (62%)
Frame = +2
Query: 65 LNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVR 244
+ D+ D E + EWAQL++DR LR +++ TGE+K L N++RLIWNA++IF V
Sbjct: 151 IRDLQGSPDAIEEVENEWAQLEEDRRLLR-KIYATGESKCVLPCNLQRLIWNAQKIFHVE 209
Query: 245 QNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
+ + L+P ++RGV L + ++ D+
Sbjct: 210 KREPVCLNPLNVIRGVRSLSEKLIIVGGDD 239
[57][TOP]
>UniRef100_Q30BD8 DNA-directed RNA polymerase (Fragment) n=1 Tax=Cyanophora paradoxa
RepID=Q30BD8_CYAPA
Length = 1000
Score = 71.2 bits (173), Expect = 3e-11
Identities = 38/102 (37%), Positives = 60/102 (58%)
Frame = +2
Query: 47 YLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAK 226
+L +I + L KE+ QL KDR+ LR E+ ++GE + L VN++RLIWNA+
Sbjct: 830 FLDPDVAAEIRGSAVIRHQLDKEYEQLLKDREQLRSEIVQSGEGAVHLPVNLKRLIWNAQ 889
Query: 227 RIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352
+I+ V + SDL P I++GVELL + V+ ++ +A
Sbjct: 890 KIYKVDTSKPSDLRPDIILQGVELLSTQLVVIAGEDTLSREA 931
[58][TOP]
>UniRef100_B3MQ29 DNA-directed RNA polymerase n=1 Tax=Drosophila ananassae
RepID=B3MQ29_DROAN
Length = 1889
Score = 71.2 bits (173), Expect = 3e-11
Identities = 35/104 (33%), Positives = 63/104 (60%), Gaps = 4/104 (3%)
Frame = +2
Query: 35 SNSPYLSQAALNDI----HSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNI 202
SN Y+ + +D+ D + L EW +L DRD LR ++F G++K+ L N+
Sbjct: 917 SNERYMRKVFTDDVIKEMTDSSDAIQELEAEWDRLVTDRDSLR-QIFPNGDSKVVLPCNL 975
Query: 203 ERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
+R+IWN ++IF + + +DLSP ++++GV+ LL R ++T ++
Sbjct: 976 QRMIWNVQKIFHINKRLPTDLSPMRVIKGVKGLLERCVIVTGND 1019
[59][TOP]
>UniRef100_Q2TUN5 DNA-directed RNA polymerase (Fragment) n=1 Tax=Ephedra viridis
RepID=Q2TUN5_EPHVI
Length = 1013
Score = 70.9 bits (172), Expect = 4e-11
Identities = 38/109 (34%), Positives = 62/109 (56%)
Frame = +2
Query: 26 QESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIE 205
QE+ + Y+ +DI + + ++L E+ +L+ DR L E+ TGE PL VN++
Sbjct: 843 QENWHPTYMLPEMADDIKNISEFQDVLVAEYKKLQLDRRQLGMEIAPTGENSWPLPVNLK 902
Query: 206 RLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352
RLIWNA++IF V SD+ P +IV ++ L R +V+ D+ +A
Sbjct: 903 RLIWNAQKIFKVDPRKTSDMQPLEIVDTIDKLQERLKVVPGDDPLSFEA 951
[60][TOP]
>UniRef100_Q6E226 DNA-directed RNA polymerase (Fragment) n=1 Tax=Caenorhabditis
plicata RepID=Q6E226_9PELO
Length = 636
Score = 70.9 bits (172), Expect = 4e-11
Identities = 34/95 (35%), Positives = 58/95 (61%)
Frame = +2
Query: 53 SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRI 232
+ + + +I D E + EWAQL++DR LR ++F G+AK+ L N++RLIWNA++I
Sbjct: 144 TDSVIREIQESEDAIEKVESEWAQLEEDRRLLR-KIFPKGDAKIVLPCNLQRLIWNAQKI 202
Query: 233 FDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDED 337
F V DLSP ++ GV + + +++ ++D
Sbjct: 203 FKVDTRKPVDLSPLHVIDGVREISSKLIIVSGNDD 237
[61][TOP]
>UniRef100_O01364 DNA-directed RNA polymerase (Fragment) n=1 Tax=Cruznema tripartitum
RepID=O01364_9BILA
Length = 633
Score = 70.9 bits (172), Expect = 4e-11
Identities = 34/97 (35%), Positives = 59/97 (60%)
Frame = +2
Query: 47 YLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAK 226
+ ++ + D+ + + EWAQL++DR LR ++F TG+AK+ L N++RL+WNA+
Sbjct: 138 FYTEDVVRDLQGSSEALREVESEWAQLEEDRRLLR-KIFPTGDAKIVLPCNLKRLLWNAQ 196
Query: 227 RIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDED 337
+IF V +DL+P +++ GV L + V+ ED
Sbjct: 197 KIFHVEMRKPTDLNPLRVIEGVR-ELSKKLVIVGGED 232
[62][TOP]
>UniRef100_A9QMQ5 DNA-directed RNA polymerase (Fragment) n=1 Tax=Cruznema tripartitum
RepID=A9QMQ5_9BILA
Length = 276
Score = 70.9 bits (172), Expect = 4e-11
Identities = 34/97 (35%), Positives = 59/97 (60%)
Frame = +2
Query: 47 YLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAK 226
+ ++ + D+ + + EWAQL++DR LR ++F TG+AK+ L N++RL+WNA+
Sbjct: 131 FYTEDVVRDLQGSSEALREVESEWAQLEEDRRLLR-KIFPTGDAKIVLPCNLKRLLWNAQ 189
Query: 227 RIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDED 337
+IF V +DL+P +++ GV L + V+ ED
Sbjct: 190 KIFHVEMRKPTDLNPLRVIEGVR-ELSKKLVIVGGED 225
[63][TOP]
>UniRef100_A9QMG3 RNA polymerase 2 (Fragment) n=1 Tax=Choriorhabditis cristata
RepID=A9QMG3_9BILA
Length = 270
Score = 70.9 bits (172), Expect = 4e-11
Identities = 33/97 (34%), Positives = 60/97 (61%)
Frame = +2
Query: 47 YLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAK 226
+ + + ++ + + +EW QL++DR LR ++F TG+AK+ L N++RLIWNA+
Sbjct: 123 HYKEEVVRELQGSSEALTEIEEEWRQLEEDRRLLR-KIFPTGDAKIVLPCNLQRLIWNAQ 181
Query: 227 RIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDED 337
+IF V +DL+P +++ GV+ L + ++ S ED
Sbjct: 182 KIFHVHMRQTTDLNPVRVIEGVK-ELSKKLIIVSGED 217
[64][TOP]
>UniRef100_Q9PTX4 DNA-directed RNA polymerase (Fragment) n=1 Tax=Lethenteron
reissneri RepID=Q9PTX4_LAMRE
Length = 595
Score = 70.5 bits (171), Expect = 6e-11
Identities = 34/95 (35%), Positives = 59/95 (62%)
Frame = +2
Query: 50 LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 229
L + +NDI S + L KE+ +++ DRD LR VF TG++K+ L N+ R+IWNA++
Sbjct: 433 LQEEVVNDIMSNAHIQNELDKEFDRVRSDRDTLR-SVFPTGDSKVVLPCNLMRMIWNAQK 491
Query: 230 IFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
IF + +D++P +I+ GV+ L R ++ ++
Sbjct: 492 IFHINTRQPTDINPLRIIEGVQDLSKRLMIVKGED 526
[65][TOP]
>UniRef100_Q84KP6 DNA-directed RNA polymerase n=1 Tax=Cyanidioschyzon merolae
RepID=Q84KP6_CYAME
Length = 1819
Score = 70.5 bits (171), Expect = 6e-11
Identities = 39/102 (38%), Positives = 62/102 (60%)
Frame = +2
Query: 47 YLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAK 226
Y+ ++ + + +V L +E+ QL DR+ L VF TGEAK PL VN++RLI N +
Sbjct: 924 YIEPDLIDAVRTDPEVALELEEEYQQLLADREQLC-AVFPTGEAKWPLMVNVQRLIQNCR 982
Query: 227 RIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352
IF ++ + SDL P +I++GV +LL R V+ D++ +A
Sbjct: 983 SIFGIQHDTLSDLHPRQIIQGVRVLLQRCVVVPGDDELSREA 1024
[66][TOP]
>UniRef100_Q9NJM1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Hanseniella sp.
'Han' RepID=Q9NJM1_9MYRI
Length = 468
Score = 70.5 bits (171), Expect = 6e-11
Identities = 32/94 (34%), Positives = 57/94 (60%)
Frame = +2
Query: 53 SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRI 232
++ + D+ V L KEW L+KDR LR E+F G++K+ L N++R+IWNA++I
Sbjct: 320 TEDVVKDLIGSAQVLSELEKEWELLQKDRKSLR-EIFPKGDSKVVLPCNLQRMIWNAQKI 378
Query: 233 FDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
F + Q +DL+P +++ GV L + ++ ++
Sbjct: 379 FHINQRSATDLNPVRVIEGVRELTKKIVIVVGED 412
[67][TOP]
>UniRef100_Q6E224 DNA-directed RNA polymerase (Fragment) n=1 Tax=Caenorhabditis
drosophilae RepID=Q6E224_9PELO
Length = 633
Score = 70.5 bits (171), Expect = 6e-11
Identities = 35/102 (34%), Positives = 58/102 (56%)
Frame = +2
Query: 47 YLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAK 226
Y S+ + D++ D E + EW QL++DR LR ++F G+AK+ L N++RL+WNA+
Sbjct: 141 YYSEDVIRDLNESEDAIEKVESEWTQLEEDRRLLR-KIFPKGDAKIVLPCNLQRLMWNAQ 199
Query: 227 RIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352
+IF V +LSP ++ GV L + ++ +D A
Sbjct: 200 KIFKVDMRKPVNLSPLHVIDGVRELSKKLVIVGGSDDISKQA 241
[68][TOP]
>UniRef100_Q6E223 RNA polymerase 2 (Fragment) n=1 Tax=Caenorhabditis sp. DF5070
RepID=Q6E223_9PELO
Length = 606
Score = 70.5 bits (171), Expect = 6e-11
Identities = 35/102 (34%), Positives = 58/102 (56%)
Frame = +2
Query: 47 YLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAK 226
Y S+ + D++ D E + EW QL++DR LR ++F G+AK+ L N++RL+WNA+
Sbjct: 125 YYSEDVIRDLNESPDAIEKVESEWTQLEEDRRLLR-KIFPKGDAKIVLPCNLQRLMWNAQ 183
Query: 227 RIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352
+IF V +LSP ++ GV L + ++ +D A
Sbjct: 184 KIFKVDMRKPVNLSPLHVIDGVRELSKKLVIVGGSDDISKQA 225
[69][TOP]
>UniRef100_Q1WKU2 Putative RNA polymerase II 215 kD subunit (Fragment) n=1
Tax=Drosophila simulans RepID=Q1WKU2_DROSI
Length = 746
Score = 70.5 bits (171), Expect = 6e-11
Identities = 31/90 (34%), Positives = 58/90 (64%)
Frame = +2
Query: 65 LNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVR 244
+ ++ + + L EW +L DRD LR ++F GE+K+ L N++R+IWN ++IF +
Sbjct: 73 IKEMTDSSEAIQELEAEWDRLVSDRDSLR-QIFPNGESKVVLPCNLQRMIWNVQKIFHIN 131
Query: 245 QNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
+ +DLSP ++++GV+ LL R ++T ++
Sbjct: 132 KRLPTDLSPIRVIKGVKTLLERCVIVTGND 161
[70][TOP]
>UniRef100_B4IK28 DNA-directed RNA polymerase n=1 Tax=Drosophila sechellia
RepID=B4IK28_DROSE
Length = 1887
Score = 70.5 bits (171), Expect = 6e-11
Identities = 31/90 (34%), Positives = 58/90 (64%)
Frame = +2
Query: 65 LNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVR 244
+ ++ + + L EW +L DRD LR ++F GE+K+ L N++R+IWN ++IF +
Sbjct: 931 IKEMTDSSEAIQELEAEWDRLVSDRDSLR-QIFPNGESKVVLPCNLQRMIWNVQKIFHIN 989
Query: 245 QNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
+ +DLSP ++++GV+ LL R ++T ++
Sbjct: 990 KRLPTDLSPIRVIKGVKTLLERCVIVTGND 1019
[71][TOP]
>UniRef100_A9UNH9 DNA-directed RNA polymerase n=1 Tax=Drosophila melanogaster
RepID=A9UNH9_DROME
Length = 1887
Score = 70.5 bits (171), Expect = 6e-11
Identities = 31/90 (34%), Positives = 58/90 (64%)
Frame = +2
Query: 65 LNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVR 244
+ ++ + + L EW +L DRD LR ++F GE+K+ L N++R+IWN ++IF +
Sbjct: 931 IKEMTDSSEAIQELEAEWDRLVSDRDSLR-QIFPNGESKVVLPCNLQRMIWNVQKIFHIN 989
Query: 245 QNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
+ +DLSP ++++GV+ LL R ++T ++
Sbjct: 990 KRLPTDLSPIRVIKGVKTLLERCVIVTGND 1019
[72][TOP]
>UniRef100_A9QMP1 RNA polymerase 2 (Fragment) n=1 Tax=Pellioditis mediterranea
RepID=A9QMP1_9PELO
Length = 276
Score = 70.5 bits (171), Expect = 6e-11
Identities = 31/94 (32%), Positives = 58/94 (61%)
Frame = +2
Query: 53 SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRI 232
++ + D+ + + + +EW QL+ DR LR ++F TG+AK+ L N++RLIWNA++I
Sbjct: 127 TEDVIRDLQGSSEALKQIEEEWHQLEHDRRLLR-KIFPTGDAKIVLPCNLQRLIWNAQKI 185
Query: 233 FDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
F V +DLSP +++ GV + + ++ ++
Sbjct: 186 FHVETRKPTDLSPLRVIEGVRDMSEKLIIVAGED 219
[73][TOP]
>UniRef100_A9QMF9 DNA-directed RNA polymerase (Fragment) n=1 Tax=Rhabditis rainai
RepID=A9QMF9_9BILA
Length = 618
Score = 70.5 bits (171), Expect = 6e-11
Identities = 36/110 (32%), Positives = 63/110 (57%), Gaps = 2/110 (1%)
Frame = +2
Query: 29 ESSNSPYLSQAALNDIHS--GGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNI 202
E + + ++ ++D+ D E + EWAQL++DR LR ++F TG AK+ L N+
Sbjct: 125 EKTMKKFFTEDVIHDLQGPDSKDAIETVEAEWAQLEEDRRLLR-KIFPTGNAKVVLPCNL 183
Query: 203 ERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352
+RLIWN ++IF V + L+P K++ GV+ L + +++ D+ A
Sbjct: 184 QRLIWNXQKIFRVETRKPTSLNPLKVISGVQELSKKLIIVSGDDSISKQA 233
[74][TOP]
>UniRef100_A9QMF8 DNA-directed RNA polymerase (Fragment) n=1 Tax=Rhabditis sp. SB347
RepID=A9QMF8_9BILA
Length = 621
Score = 70.5 bits (171), Expect = 6e-11
Identities = 36/103 (34%), Positives = 60/103 (58%)
Frame = +2
Query: 29 ESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIER 208
E S ++ + ++ D + EW QL++DR LR ++F TG+AK+ L N++R
Sbjct: 136 EKSLRTLYTEDVVRELQGSSDALKEAEAEWGQLEEDRRLLR-KIFPTGDAKIVLPCNLQR 194
Query: 209 LIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDED 337
LIWNA++IF V +DL+P +++ GV L + ++ S ED
Sbjct: 195 LIWNAQKIFHVETRKPTDLNPIRVIEGVRELSSKL-IIVSGED 236
[75][TOP]
>UniRef100_A9QME7 DNA-directed RNA polymerase (Fragment) n=1 Tax=Pellioditis
mediterranea RepID=A9QME7_9PELO
Length = 618
Score = 70.5 bits (171), Expect = 6e-11
Identities = 31/94 (32%), Positives = 58/94 (61%)
Frame = +2
Query: 53 SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRI 232
++ + D+ + + + +EW QL+ DR LR ++F TG+AK+ L N++RLIWNA++I
Sbjct: 141 TEDVIRDLQGSSEALKQIEEEWHQLEHDRRLLR-KIFPTGDAKIVLPCNLQRLIWNAQKI 199
Query: 233 FDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
F V +DLSP +++ GV + + ++ ++
Sbjct: 200 FHVETRKPTDLSPLRVIEGVRDMSEKLIIVAGED 233
[76][TOP]
>UniRef100_P04052 DNA-directed RNA polymerase II subunit RPB1 n=2 Tax=Drosophila
melanogaster RepID=RPB1_DROME
Length = 1887
Score = 70.5 bits (171), Expect = 6e-11
Identities = 31/90 (34%), Positives = 58/90 (64%)
Frame = +2
Query: 65 LNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVR 244
+ ++ + + L EW +L DRD LR ++F GE+K+ L N++R+IWN ++IF +
Sbjct: 931 IKEMTDSSEAIQELEAEWDRLVSDRDSLR-QIFPNGESKVVLPCNLQRMIWNVQKIFHIN 989
Query: 245 QNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
+ +DLSP ++++GV+ LL R ++T ++
Sbjct: 990 KRLPTDLSPIRVIKGVKTLLERCVIVTGND 1019
[77][TOP]
>UniRef100_Q9XZU8 DNA-directed RNA polymerase (Fragment) n=1 Tax=Drosophila
pseudoobscura pseudoobscura RepID=Q9XZU8_DROPS
Length = 1811
Score = 70.1 bits (170), Expect = 7e-11
Identities = 33/101 (32%), Positives = 61/101 (60%), Gaps = 4/101 (3%)
Frame = +2
Query: 35 SNSPYLSQA----ALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNI 202
SN Y+ + + ++ + + L EW L +DRD LR ++F G++K+ L N+
Sbjct: 839 SNERYMRKVFTDEVIKEMTDSSEAIQDLESEWDHLMQDRDHLR-QIFPNGDSKVVLPCNL 897
Query: 203 ERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLT 325
+R+IWN ++IF + + +DLSP ++++GV+ LL R ++T
Sbjct: 898 QRMIWNVQKIFHINKRLPTDLSPMRVIKGVKTLLERCVIVT 938
[78][TOP]
>UniRef100_Q9U5F6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Eptatretus burgeri
RepID=Q9U5F6_EPTBU
Length = 595
Score = 70.1 bits (170), Expect = 7e-11
Identities = 31/95 (32%), Positives = 60/95 (63%)
Frame = +2
Query: 50 LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 229
L + ++++ S + L +E+ Q++ DR+ LR VF TG++K+ L N++R+IWNA++
Sbjct: 433 LHEDVVSEVMSSAHIQNCLEREFEQIRDDREVLR-AVFPTGDSKVVLPCNLQRMIWNAQK 491
Query: 230 IFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
IF + +DL+P ++V GV L + +++ D+
Sbjct: 492 IFHINTRSSTDLNPLRVVEGVNDLTQKLQIVKGDD 526
[79][TOP]
>UniRef100_Q6E228 DNA-directed RNA polymerase (Fragment) n=1 Tax=Rhabditella axei
RepID=Q6E228_9BILA
Length = 621
Score = 70.1 bits (170), Expect = 7e-11
Identities = 34/103 (33%), Positives = 63/103 (61%)
Frame = +2
Query: 29 ESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIER 208
E + + ++ + D+ + + + EW QL++DR LR ++F TG+AK+ L N++R
Sbjct: 136 EKTLRKFYTEEVVRDLQGSTEAMKEVESEWHQLEEDRRLLR-KIFPTGDAKIVLPCNLQR 194
Query: 209 LIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDED 337
LIWNA++IF V +DL+P +++ G++ L + ++ S ED
Sbjct: 195 LIWNAQKIFHVETRKPTDLNPLRVIDGIKELSSKL-IIVSGED 236
[80][TOP]
>UniRef100_Q29IN2 DNA-directed RNA polymerase n=1 Tax=Drosophila pseudoobscura
pseudoobscura RepID=Q29IN2_DROPS
Length = 1889
Score = 70.1 bits (170), Expect = 7e-11
Identities = 33/101 (32%), Positives = 61/101 (60%), Gaps = 4/101 (3%)
Frame = +2
Query: 35 SNSPYLSQA----ALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNI 202
SN Y+ + + ++ + + L EW L +DRD LR ++F G++K+ L N+
Sbjct: 917 SNERYMRKVFTDEVIKEMTDSSEAIQDLESEWDHLMQDRDHLR-QIFPNGDSKVVLPCNL 975
Query: 203 ERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLT 325
+R+IWN ++IF + + +DLSP ++++GV+ LL R ++T
Sbjct: 976 QRMIWNVQKIFHINKRLPTDLSPMRVIKGVKTLLERCVIVT 1016
[81][TOP]
>UniRef100_B4H2R8 DNA-directed RNA polymerase n=1 Tax=Drosophila persimilis
RepID=B4H2R8_DROPE
Length = 1804
Score = 70.1 bits (170), Expect = 7e-11
Identities = 33/101 (32%), Positives = 61/101 (60%), Gaps = 4/101 (3%)
Frame = +2
Query: 35 SNSPYLSQA----ALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNI 202
SN Y+ + + ++ + + L EW L +DRD LR ++F G++K+ L N+
Sbjct: 917 SNERYMRKVFTDEVIKEMTDSSEAIQDLESEWDHLMQDRDHLR-QIFPNGDSKVVLPCNL 975
Query: 203 ERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLT 325
+R+IWN ++IF + + +DLSP ++++GV+ LL R ++T
Sbjct: 976 QRMIWNVQKIFHINKRLPTDLSPMRVIKGVKTLLERCVIVT 1016
[82][TOP]
>UniRef100_A9QME1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Rhabditis brassicae
RepID=A9QME1_9BILA
Length = 628
Score = 70.1 bits (170), Expect = 7e-11
Identities = 37/115 (32%), Positives = 65/115 (56%), Gaps = 3/115 (2%)
Frame = +2
Query: 2 LTEPDLHLQ---ESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTG 172
L E D L E + Y ++ + ++ + + + +EW QL++DR LR ++F G
Sbjct: 117 LFEKDFKLDLSDEKTLRKYYTEDVIRELQGSSEAIKEVEQEWGQLEEDRRLLR-KIFPNG 175
Query: 173 EAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDED 337
AK+ L N++RL+WNA++IF V +DL+P +++ GV L + ++ S ED
Sbjct: 176 NAKIVLPCNLQRLLWNAQKIFHVETRKPTDLNPLRVIEGVRELSQKL-IIVSGED 229
[83][TOP]
>UniRef100_Q2N1B5 DNA-directed RNA polymerase II largest subunit (Fragment) n=1
Tax=Platynereis dumerilii RepID=Q2N1B5_PLADU
Length = 248
Score = 69.7 bits (169), Expect = 1e-10
Identities = 34/101 (33%), Positives = 57/101 (56%)
Frame = +2
Query: 50 LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 229
+++ + D+ + L EW QL DR+ LR +F TG+AK+ L N+ RLIWNA++
Sbjct: 76 MTEEVIKDLAGNTTAIQTLDHEWEQLMADRERLRG-IFPTGDAKIVLPCNLNRLIWNAQK 134
Query: 230 IFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352
IF + +DL P K+V G+ L + ++ ++ +DA
Sbjct: 135 IFRINIRKPTDLHPVKVVEGIRELSKKFLIVKGEDKLSIDA 175
[84][TOP]
>UniRef100_A9QMT4 DNA-directed RNA polymerase (Fragment) n=1 Tax=Pellioditis sp.
JU274 RepID=A9QMT4_9PELO
Length = 280
Score = 69.7 bits (169), Expect = 1e-10
Identities = 34/97 (35%), Positives = 62/97 (63%)
Frame = +2
Query: 47 YLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAK 226
+ ++ + +I + +L+ +EWAQL++DR LR ++F G+AK+ L N+ RLIWNA+
Sbjct: 137 FYTEDTVREIQGSTEALKLVEEEWAQLEEDRRLLR-KIFPRGDAKVVLPCNLNRLIWNAQ 195
Query: 227 RIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDED 337
+IF V ++L+P++++ GV L + ++ S ED
Sbjct: 196 KIFKVETRKLTNLNPTRVIDGVR-NLSKKLIIVSGED 231
[85][TOP]
>UniRef100_A9QMH3 DNA-directed RNA polymerase (Fragment) n=1 Tax=Rhabditis sp. PS1130
RepID=A9QMH3_9BILA
Length = 619
Score = 69.7 bits (169), Expect = 1e-10
Identities = 37/115 (32%), Positives = 66/115 (57%), Gaps = 3/115 (2%)
Frame = +2
Query: 2 LTEPDLHLQ---ESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTG 172
L E D L E + Y ++ + ++ + + + +EW QL++DR LR ++F +G
Sbjct: 116 LFEQDFKLDLSDERTLRKYYTEDVIRELQGSSEAIKEVEQEWGQLEEDRRLLR-KIFPSG 174
Query: 173 EAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDED 337
AK+ L N++RL+WNA++IF V +DL+P +++ GV L + ++ S ED
Sbjct: 175 NAKIVLPCNLQRLLWNAQKIFHVETRKPTDLNPLRVIEGVR-ELSKKLIIVSGED 228
[86][TOP]
>UniRef100_A9QME6 RNA polymerase 2 (Fragment) n=1 Tax=Pellioditis sp. JU274
RepID=A9QME6_9PELO
Length = 526
Score = 69.7 bits (169), Expect = 1e-10
Identities = 34/97 (35%), Positives = 62/97 (63%)
Frame = +2
Query: 47 YLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAK 226
+ ++ + +I + +L+ +EWAQL++DR LR ++F G+AK+ L N+ RLIWNA+
Sbjct: 39 FYTEDTVREIQGSTEALKLVEEEWAQLEEDRRLLR-KIFPRGDAKVVLPCNLNRLIWNAQ 97
Query: 227 RIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDED 337
+IF V ++L+P++++ GV L + ++ S ED
Sbjct: 98 KIFKVETRKLTNLNPTRVIDGVR-NLSKKLIIVSGED 133
[87][TOP]
>UniRef100_Q1WKU4 Putative RNA polymerase II 215 kD subunit (Fragment) n=1
Tax=Drosophila erecta RepID=Q1WKU4_DROER
Length = 760
Score = 69.3 bits (168), Expect = 1e-10
Identities = 34/104 (32%), Positives = 63/104 (60%), Gaps = 4/104 (3%)
Frame = +2
Query: 35 SNSPYLSQAALNDI----HSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNI 202
SN Y+ + +D+ + + L EW +L DRD LR ++F G++K+ L N+
Sbjct: 59 SNERYMRKVFTDDVIKEMTDSSEAIQELEAEWDRLVGDRDSLR-QIFPNGDSKVVLPCNL 117
Query: 203 ERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
+R+IWN ++IF + + +DLSP ++++GV+ LL R ++T ++
Sbjct: 118 QRMIWNVQKIFHINKRLPTDLSPMRVIKGVKGLLERCVIVTGND 161
[88][TOP]
>UniRef100_Q1WKU0 Putative RNA polymerase II 215 kD subunit (Fragment) n=2
Tax=melanogaster subgroup RepID=Q1WKU0_DROYA
Length = 766
Score = 69.3 bits (168), Expect = 1e-10
Identities = 34/104 (32%), Positives = 63/104 (60%), Gaps = 4/104 (3%)
Frame = +2
Query: 35 SNSPYLSQAALNDI----HSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNI 202
SN Y+ + +D+ + + L EW +L DRD LR ++F G++K+ L N+
Sbjct: 59 SNERYMRKVFTDDVIKEMTDSSEAIQELEAEWDRLVGDRDSLR-QIFPNGDSKVVLPCNL 117
Query: 203 ERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
+R+IWN ++IF + + +DLSP ++++GV+ LL R ++T ++
Sbjct: 118 QRMIWNVQKIFHINKRLPTDLSPMRVIKGVKGLLERCVIVTGND 161
[89][TOP]
>UniRef100_B4PY98 DNA-directed RNA polymerase n=1 Tax=Drosophila yakuba
RepID=B4PY98_DROYA
Length = 1889
Score = 69.3 bits (168), Expect = 1e-10
Identities = 34/104 (32%), Positives = 63/104 (60%), Gaps = 4/104 (3%)
Frame = +2
Query: 35 SNSPYLSQAALNDI----HSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNI 202
SN Y+ + +D+ + + L EW +L DRD LR ++F G++K+ L N+
Sbjct: 917 SNERYMRKVFTDDVIKEMTDSSEAIQELEAEWDRLVGDRDSLR-QIFPNGDSKVVLPCNL 975
Query: 203 ERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
+R+IWN ++IF + + +DLSP ++++GV+ LL R ++T ++
Sbjct: 976 QRMIWNVQKIFHINKRLPTDLSPMRVIKGVKGLLERCVIVTGND 1019
[90][TOP]
>UniRef100_B4NDK9 DNA-directed RNA polymerase n=1 Tax=Drosophila willistoni
RepID=B4NDK9_DROWI
Length = 1890
Score = 69.3 bits (168), Expect = 1e-10
Identities = 31/90 (34%), Positives = 57/90 (63%)
Frame = +2
Query: 65 LNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVR 244
+ ++ D + L EW +L DRD LR ++F G++K+ L N++R+IWN ++IF +
Sbjct: 931 IKEMTDSSDAIQELESEWDRLVVDRDSLR-QIFPNGDSKVVLPCNLQRMIWNVQKIFHIN 989
Query: 245 QNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
+ +DLSP ++++GV LL R ++T ++
Sbjct: 990 KRLPTDLSPMRVIKGVRGLLERCVIVTGND 1019
[91][TOP]
>UniRef100_B4JXA6 DNA-directed RNA polymerase n=1 Tax=Drosophila grimshawi
RepID=B4JXA6_DROGR
Length = 1889
Score = 69.3 bits (168), Expect = 1e-10
Identities = 38/105 (36%), Positives = 64/105 (60%), Gaps = 5/105 (4%)
Frame = +2
Query: 35 SNSPYLSQAALNDI-----HSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVN 199
SN Y+ + +D+ S + EL A EW L DRD LR +F+ G++K+ L N
Sbjct: 917 SNERYMRKVFADDVIKEITESSVAIQELEA-EWDHLVTDRDNLR-TIFRNGDSKVVLPCN 974
Query: 200 IERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
++R+IWN ++IF + + +DLSP +++RGV LL+R ++T ++
Sbjct: 975 LQRMIWNVQKIFHINKRLPTDLSPMRVIRGVSDLLNRCVIVTGND 1019
[92][TOP]
>UniRef100_B3NUC1 DNA-directed RNA polymerase n=1 Tax=Drosophila erecta
RepID=B3NUC1_DROER
Length = 1889
Score = 69.3 bits (168), Expect = 1e-10
Identities = 34/104 (32%), Positives = 63/104 (60%), Gaps = 4/104 (3%)
Frame = +2
Query: 35 SNSPYLSQAALNDI----HSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNI 202
SN Y+ + +D+ + + L EW +L DRD LR ++F G++K+ L N+
Sbjct: 917 SNERYMRKVFTDDVIKEMTDSSEAIQELEAEWDRLVGDRDSLR-QIFPNGDSKVVLPCNL 975
Query: 203 ERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
+R+IWN ++IF + + +DLSP ++++GV+ LL R ++T ++
Sbjct: 976 QRMIWNVQKIFHINKRLPTDLSPMRVIKGVKGLLERCVIVTGND 1019
[93][TOP]
>UniRef100_A9YGC1 RNA polymerase II 215 kD subunit (Fragment) n=2 Tax=melanogaster
subgroup RepID=A9YGC1_DROME
Length = 247
Score = 69.3 bits (168), Expect = 1e-10
Identities = 31/77 (40%), Positives = 53/77 (68%)
Frame = +2
Query: 104 LAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIV 283
L EW +L DRD LR ++F GE+K+ L N++R+IWN ++IF + + +DLSP +++
Sbjct: 1 LEAEWDRLVSDRDSLR-QIFPNGESKVVLPCNLQRMIWNVQKIFHINKRLPTDLSPIRVI 59
Query: 284 RGVELLLHRTRVLTSDE 334
+GV+ LL R ++T ++
Sbjct: 60 KGVKTLLERCVIVTGND 76
[94][TOP]
>UniRef100_A9QMS7 DNA-directed RNA polymerase (Fragment) n=1 Tax=Cuticonema vivipara
RepID=A9QMS7_9BILA
Length = 407
Score = 69.3 bits (168), Expect = 1e-10
Identities = 34/91 (37%), Positives = 59/91 (64%)
Frame = +2
Query: 65 LNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVR 244
+ ++ + + + + +EW QL+ DR LR ++F TG+A + L N++R++WNA++IF V
Sbjct: 148 IRELQNSPEALQAVEEEWIQLESDRRLLR-KIFPTGKAGVVLPCNLDRMMWNARKIFHVE 206
Query: 245 QNDRSDLSPSKIVRGVELLLHRTRVLTSDED 337
+DLSP K+++GV+ L R V+ S ED
Sbjct: 207 TRKPTDLSPLKVIQGVKDLTSRL-VIVSGED 236
[95][TOP]
>UniRef100_A9QMD9 RNA polymerase 2 (Fragment) n=1 Tax=Protorhabditis sp. JB122
RepID=A9QMD9_9BILA
Length = 595
Score = 69.3 bits (168), Expect = 1e-10
Identities = 35/97 (36%), Positives = 59/97 (60%)
Frame = +2
Query: 47 YLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAK 226
+ S+ + ++ + + EWAQL++DR LR ++F G+AK+ L N++RLIWNA+
Sbjct: 102 HYSEDVVRELMGSPEALREVEGEWAQLEEDRRLLR-KIFPNGDAKIVLPCNLQRLIWNAQ 160
Query: 227 RIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDED 337
+IF + +DLSP +++ GV L R ++ S ED
Sbjct: 161 KIFHIELRKPTDLSPLRVIEGVR-ELSRKLIIVSGED 196
[96][TOP]
>UniRef100_Q4P7Q0 DNA-directed RNA polymerase n=1 Tax=Ustilago maydis
RepID=Q4P7Q0_USTMA
Length = 1774
Score = 69.3 bits (168), Expect = 1e-10
Identities = 39/113 (34%), Positives = 67/113 (59%), Gaps = 15/113 (13%)
Frame = +2
Query: 71 DIHSGG---------------DVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIE 205
D+H GG ++ +LL +E+AQL+ DR+ LRHE+F++ + ++ L +N+
Sbjct: 914 DLHDGGFKKGTLRPGLGDWSQELQDLLDEEFAQLEFDRNLLRHEIFQSDQVQVRLPMNVA 973
Query: 206 RLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIARE 364
RL+ NA++IF V +DLSP++++ G+ +L R V+ D D I+RE
Sbjct: 974 RLVLNAQQIFHVDPRKPTDLSPAEVIIGLRNVLDRLIVIRGD-----DPISRE 1021
[97][TOP]
>UniRef100_Q9NJN3 RNA polymerase II largest subunit (Fragment) n=1 Tax=Armadillidium
vulgare RepID=Q9NJN3_ARMVU
Length = 433
Score = 68.9 bits (167), Expect = 2e-10
Identities = 36/117 (30%), Positives = 67/117 (57%), Gaps = 4/117 (3%)
Frame = +2
Query: 14 DLHLQESSNSPYL----SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAK 181
D + + +N YL ++ + ++ + +L EW +L++DR LR +VF G+ K
Sbjct: 75 DKYRFDVTNERYLRHLFNEDVVRELLGSPEAINILEVEWQKLQEDRVALR-QVFPKGDTK 133
Query: 182 LPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352
+ L N+ER+IWN ++IF + + ++DLSP K+V GV L + +++ ++ V A
Sbjct: 134 VVLPCNLERMIWNVQKIFHINKRMQTDLSPIKVVEGVNETLRKCMIVSGEDRISVQA 190
[98][TOP]
>UniRef100_Q6JU60 DNA-directed RNA polymerase (Fragment) n=1 Tax=Armadillidium
vulgare RepID=Q6JU60_ARMVU
Length = 736
Score = 68.9 bits (167), Expect = 2e-10
Identities = 36/117 (30%), Positives = 67/117 (57%), Gaps = 4/117 (3%)
Frame = +2
Query: 14 DLHLQESSNSPYL----SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAK 181
D + + +N YL ++ + ++ + +L EW +L++DR LR +VF G+ K
Sbjct: 378 DKYRFDVTNERYLRHLFNEDVVRELLGSPEAINILEVEWQKLQEDRVALR-QVFPKGDTK 436
Query: 182 LPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352
+ L N+ER+IWN ++IF + + ++DLSP K+V GV L + +++ ++ V A
Sbjct: 437 VVLPCNLERMIWNVQKIFHINKRMQTDLSPIKVVEGVNETLRKCMIVSGEDRISVQA 493
[99][TOP]
>UniRef100_Q1WKU3 Putative RNA polymerase II 215 kD subunit (Fragment) n=1
Tax=Drosophila orena RepID=Q1WKU3_DROOR
Length = 750
Score = 68.9 bits (167), Expect = 2e-10
Identities = 34/104 (32%), Positives = 62/104 (59%), Gaps = 4/104 (3%)
Frame = +2
Query: 35 SNSPYLSQAALNDI----HSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNI 202
SN Y+ + +D+ + + L EW L DRD LR ++F G++K+ L N+
Sbjct: 59 SNERYMRKVFTDDVIKEMTDSSEAIQELEAEWDHLVGDRDSLR-QIFPNGDSKVVLPCNL 117
Query: 203 ERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
+R+IWN ++IF + + +DLSP ++++GV+ LL R ++T ++
Sbjct: 118 QRMIWNVQKIFHINKRLPTDLSPMRVIKGVKGLLERCVIVTGND 161
[100][TOP]
>UniRef100_P90678 DNA-directed RNA polymerase (Fragment) n=1 Tax=Aduncospiculum
halicti RepID=P90678_9BILA
Length = 631
Score = 68.9 bits (167), Expect = 2e-10
Identities = 33/100 (33%), Positives = 59/100 (59%)
Frame = +2
Query: 53 SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRI 232
++ + D+ S + + EW QL+ DR LR ++F G+AK+ L N++RLIWNA++I
Sbjct: 140 TEDVIRDVQSSSESIKEAELEWMQLQDDRQLLR-KIFPKGDAKIVLPCNLQRLIWNAQKI 198
Query: 233 FDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352
F V +DL+P ++++GV + + ++ D+ V A
Sbjct: 199 FHVETRKVTDLNPVRVIQGVREVSKKLIIVGGDDRISVQA 238
[101][TOP]
>UniRef100_O02428 RNA polymerase II largest subunit (Fragment) n=1 Tax=Dysdera
crocata RepID=O02428_DYSCR
Length = 240
Score = 68.9 bits (167), Expect = 2e-10
Identities = 37/110 (33%), Positives = 64/110 (58%), Gaps = 4/110 (3%)
Frame = +2
Query: 35 SNSPYLSQAALNDI--HSGGDVTEL--LAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNI 202
+N YL + +D+ G T + +EW +LK DR LR +F TG++K+ L N+
Sbjct: 82 TNERYLRRIFTDDVIREISGSTTAISEFEREWDKLKTDRGILRI-IFPTGDSKVVLPCNL 140
Query: 203 ERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352
R+IWNA++IF V +DLSP ++++GV+ L+ + ++ ++ V A
Sbjct: 141 SRMIWNAQKIFHVNTRAPTDLSPIRVMKGVDELVKKLTIVAGEDRLSVQA 190
[102][TOP]
>UniRef100_B0XAQ9 DNA-directed RNA polymerase n=1 Tax=Culex quinquefasciatus
RepID=B0XAQ9_CULQU
Length = 1874
Score = 68.9 bits (167), Expect = 2e-10
Identities = 30/94 (31%), Positives = 60/94 (63%)
Frame = +2
Query: 53 SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRI 232
++ + ++ GDV + + E+ QL +DR+ LR ++F G++K+ L N++R+IWN ++I
Sbjct: 925 NEEVIKELTESGDVIQEIEAEYEQLLRDREALR-QIFPNGDSKVVLPCNLQRMIWNVQKI 983
Query: 233 FDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
F + + +DLSP K+++GV LL + ++ +
Sbjct: 984 FHINKRAPTDLSPLKVIQGVRDLLQKCVIVAGTD 1017
[103][TOP]
>UniRef100_A9QMP3 DNA-directed RNA polymerase (Fragment) n=1 Tax=Rhabditis brassicae
RepID=A9QMP3_9BILA
Length = 406
Score = 68.9 bits (167), Expect = 2e-10
Identities = 34/113 (30%), Positives = 64/113 (56%), Gaps = 3/113 (2%)
Frame = +2
Query: 2 LTEPDLHLQ---ESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTG 172
L E D L E + Y ++ + ++ + + + +EW QL++DR LR ++F G
Sbjct: 124 LFEKDFKLDLSDEKTLRKYYTEDVIRELQGSSEAIKEVEQEWGQLEEDRRLLR-KIFPNG 182
Query: 173 EAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSD 331
AK+ L N++RL+WNA++IF V +DL+P +++ GV L + +++ +
Sbjct: 183 NAKIVLPCNLQRLLWNAQKIFHVETRKPTDLNPLRVIEGVRELSQKLIIVSGE 235
[104][TOP]
>UniRef100_A9QMF5 DNA-directed RNA polymerase (Fragment) n=1 Tax=Rhabditoides inermis
RepID=A9QMF5_9BILA
Length = 630
Score = 68.9 bits (167), Expect = 2e-10
Identities = 32/80 (40%), Positives = 52/80 (65%)
Frame = +2
Query: 53 SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRI 232
++ + D+ S D + + EWAQL++DR LR ++F G+AK+ L N++RLIWNA++I
Sbjct: 136 TEEVIRDLQSNPDALKEVECEWAQLEEDRRLLR-KIFPKGDAKIVLPCNLQRLIWNAQKI 194
Query: 233 FDVRQNDRSDLSPSKIVRGV 292
F V +DL P +++ GV
Sbjct: 195 FHVETRKPTDLHPLRVIEGV 214
[105][TOP]
>UniRef100_Q2PYS6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Polychytrium
aggregatum RepID=Q2PYS6_9FUNG
Length = 1016
Score = 68.9 bits (167), Expect = 2e-10
Identities = 37/91 (40%), Positives = 53/91 (58%)
Frame = +2
Query: 80 SGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRS 259
S G L +E+ QL+KDR+ LR +FK G + PL VN++RLIWNA+ F+V +
Sbjct: 864 SDGLTQNRLDQEFEQLRKDRETLRWTIFKDGSSSWPLPVNLKRLIWNAQNQFEVGPRKPT 923
Query: 260 DLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352
DL P I VE LL + V+ ++ V+A
Sbjct: 924 DLHPLHITESVEQLLDKLVVVRGNDPLSVEA 954
[106][TOP]
>UniRef100_Q6JTX1 RNA polymerase II largest subunit (Fragment) n=1 Tax=Isohypsibius
elegans RepID=Q6JTX1_9BILA
Length = 304
Score = 68.6 bits (166), Expect = 2e-10
Identities = 31/106 (29%), Positives = 67/106 (63%), Gaps = 4/106 (3%)
Frame = +2
Query: 29 ESSNSPYLSQA----ALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 196
++SN YL + +N I + V + L +E+ Q+K+DR+ +R ++F TG++++ L
Sbjct: 54 QTSNERYLRRLYEPDIVNSIMTDAGVPQALEQEFEQMKRDREIIR-KIFPTGDSRVVLPC 112
Query: 197 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
N++R++WNA++IF ++ +DL P ++V G+ L+ + ++ ++
Sbjct: 113 NLQRMVWNAQKIFHIKGRGTTDLHPVRVVEGLNELMKKLVIVKGED 158
[107][TOP]
>UniRef100_A9UEE2 DNA-directed RNA polymerase (Fragment) n=1 Tax=Cephaloboides cf.
armata SB363 RepID=A9UEE2_9BILA
Length = 475
Score = 68.6 bits (166), Expect = 2e-10
Identities = 34/75 (45%), Positives = 52/75 (69%)
Frame = +2
Query: 113 EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 292
EWAQL++DR LR ++F TG+AK+ L N++RLIWNA++IF V +DL+P +++ G+
Sbjct: 154 EWAQLEEDRRLLR-KIFPTGDAKIVLPCNLQRLIWNAQKIFHVETRKPTDLNPLRVIEGI 212
Query: 293 ELLLHRTRVLTSDED 337
L + V+ S ED
Sbjct: 213 RELSTKL-VIVSGED 226
[108][TOP]
>UniRef100_Q6CBQ3 DNA-directed RNA polymerase n=1 Tax=Yarrowia lipolytica
RepID=Q6CBQ3_YARLI
Length = 1750
Score = 68.6 bits (166), Expect = 2e-10
Identities = 38/95 (40%), Positives = 56/95 (58%)
Frame = +2
Query: 68 NDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQ 247
NDI +V +L +E+ QL DR LR EVF G+ PL VNI R++ N++RIF+V +
Sbjct: 920 NDIVGDVEVQRVLDEEYNQLLTDRRLLREEVFTNGDHNWPLPVNIRRVVQNSQRIFNVDK 979
Query: 248 NDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352
+ SDL+ +IV GV+ L R ++ D +A
Sbjct: 980 SKVSDLTIPEIVEGVQSLCKRLTIVRGDSSLAKEA 1014
[109][TOP]
>UniRef100_A1YIA8 DNA-directed RNA polymerase (Fragment) n=1 Tax=Taphrina deformans
RepID=A1YIA8_9ASCO
Length = 1001
Score = 68.6 bits (166), Expect = 2e-10
Identities = 39/111 (35%), Positives = 67/111 (60%)
Frame = +2
Query: 2 LTEPDLHLQESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAK 181
+T+PD + S P +DI +V +LL +E+ +L +DR L+ +F +G++
Sbjct: 824 VTDPDRTIPPSFFEPG------HDIDGDFEVQKLLDQEFKELSEDRRDLQTLIFPSGDSS 877
Query: 182 LPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
PL VN++R+I N+K+IF + + R+DLSP+KI GV LL R ++ ++
Sbjct: 878 WPLPVNLDRIILNSKQIFHIAPHRRTDLSPAKIYTGVRDLLSRLIIVRGND 928
[110][TOP]
>UniRef100_O04144 DNA-directed RNA polymerase (Fragment) n=1 Tax=Spirogyra sp.
RepID=O04144_9VIRI
Length = 613
Score = 68.2 bits (165), Expect = 3e-10
Identities = 36/109 (33%), Positives = 60/109 (55%)
Frame = +2
Query: 26 QESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIE 205
QE + Y+ D + +++ E QL++DR L E+ TG++ PL VNI+
Sbjct: 431 QEDWSPDYMDPQFAKDAKIVAEFRQVMDAEVLQLEQDRRTLGLEIAPTGDSSWPLPVNIK 490
Query: 206 RLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352
RLIWNA++IF + SD++P +V G++ L R +V+ D+ +A
Sbjct: 491 RLIWNAQKIFKIDLRKPSDMNPMDVVDGMDKLQERLKVVVGDDHISREA 539
[111][TOP]
>UniRef100_B9SXC0 DNA-directed RNA polymerase n=1 Tax=Ricinus communis
RepID=B9SXC0_RICCO
Length = 1855
Score = 68.2 bits (165), Expect = 3e-10
Identities = 36/108 (33%), Positives = 62/108 (57%)
Frame = +2
Query: 29 ESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIER 208
E+ N Y+ Q ++D+ + ++ ++ E +L+ DR L E+ TG++ PL VN+ R
Sbjct: 922 ENWNPTYMYQDHIDDLKNIRELRDVFDAEVQKLEADRYQLGTEIATTGDSSWPLPVNLRR 981
Query: 209 LIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352
LIWNA++ F V + SD+ P + V V+ L R +V+ D+ V+A
Sbjct: 982 LIWNAQKTFKVDKRRPSDIHPMEAVEAVDKLQERLKVVPGDDPLSVEA 1029
[112][TOP]
>UniRef100_Q9XZS2 DNA-directed RNA polymerase n=1 Tax=Drosophila madeirensis
RepID=Q9XZS2_DROMD
Length = 1889
Score = 68.2 bits (165), Expect = 3e-10
Identities = 34/101 (33%), Positives = 59/101 (58%), Gaps = 4/101 (3%)
Frame = +2
Query: 35 SNSPYLSQA----ALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNI 202
SN Y+ + + +I + + L EW L DRD LR +F G++K+ L N+
Sbjct: 917 SNERYMRKVFTDEVIKEITDSSEAIQDLESEWDNLMHDRDNLR-VIFPNGDSKVVLPCNL 975
Query: 203 ERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLT 325
+R+IWN ++IF + + +DLSP ++++GV+ LL R ++T
Sbjct: 976 QRMIWNVQKIFHINKRLPTDLSPMRVIKGVKTLLERCVIVT 1016
[113][TOP]
>UniRef100_Q9BNL1 RNA polymerase II largest subunit (Fragment) n=1 Tax=Orthoporus
ornata RepID=Q9BNL1_9MYRI
Length = 222
Score = 68.2 bits (165), Expect = 3e-10
Identities = 33/83 (39%), Positives = 51/83 (61%)
Frame = +2
Query: 104 LAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIV 283
L KEW LK+DR+ LRH +F G+ K+ L N++R+IWNA++IF + +DLSP K++
Sbjct: 91 LEKEWETLKRDRELLRH-IFPKGDNKVVLPGNLQRMIWNAQKIFHINLRAPTDLSPLKVI 149
Query: 284 RGVELLLHRTRVLTSDEDAEVDA 352
GV L R ++ ++ A
Sbjct: 150 DGVRELSKRLVIVPGEDSLSKQA 172
[114][TOP]
>UniRef100_A9QMP7 RNA polymerase 2 (Fragment) n=1 Tax=Rhabditoides inermis
RepID=A9QMP7_9BILA
Length = 440
Score = 68.2 bits (165), Expect = 3e-10
Identities = 32/76 (42%), Positives = 50/76 (65%)
Frame = +2
Query: 65 LNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVR 244
+ D+ S D + + EWAQL++DR LR ++F G+AK+ L N++RLIWNA++IF V
Sbjct: 103 IRDLQSNPDALKEVECEWAQLEEDRRLLR-KIFPKGDAKIVLPCNLQRLIWNAQKIFHVE 161
Query: 245 QNDRSDLSPSKIVRGV 292
+DL P +++ GV
Sbjct: 162 TRKPTDLHPLRVIEGV 177
[115][TOP]
>UniRef100_A9QMG4 RNA polymerase 2 (Fragment) n=1 Tax=Pelodera strongyloides
dermatitica RepID=A9QMG4_9PELO
Length = 478
Score = 68.2 bits (165), Expect = 3e-10
Identities = 33/94 (35%), Positives = 57/94 (60%)
Frame = +2
Query: 53 SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRI 232
++ + D+ + + + EW QL++DR LR ++F G+ K+ L N++RLIWNA++I
Sbjct: 126 TEDVVRDLLGSSNALQEVEAEWQQLEEDRRLLR-KIFPKGDHKVVLPCNLQRLIWNAQKI 184
Query: 233 FDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
F V S L+P K+V GV+ L H+ ++ D+
Sbjct: 185 FKVETRKPSSLNPLKVVSGVKELSHKLVIVCGDD 218
[116][TOP]
>UniRef100_A9QMF0 DNA-directed RNA polymerase (Fragment) n=1 Tax=Pelodera
strongyloides dermatitica RepID=A9QMF0_9PELO
Length = 633
Score = 68.2 bits (165), Expect = 3e-10
Identities = 33/94 (35%), Positives = 57/94 (60%)
Frame = +2
Query: 53 SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRI 232
++ + D+ + + + EW QL++DR LR ++F G+ K+ L N++RLIWNA++I
Sbjct: 145 TEDVVRDLLGSSNALQEVEAEWQQLEEDRRLLR-KIFPKGDHKVVLPCNLQRLIWNAQKI 203
Query: 233 FDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
F V S L+P K+V GV+ L H+ ++ D+
Sbjct: 204 FKVETRKPSSLNPLKVVSGVKELSHKLVIVCGDD 237
[117][TOP]
>UniRef100_UPI00019270E9 PREDICTED: similar to DNA-directed RNA polymerase II subunit RPB1
isoform 2 n=1 Tax=Hydra magnipapillata
RepID=UPI00019270E9
Length = 2014
Score = 67.8 bits (164), Expect = 4e-10
Identities = 34/101 (33%), Positives = 60/101 (59%)
Frame = +2
Query: 50 LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 229
L++ L +I+S T + +E+ QLK DR+ LR+ +F G K+ L V + RLIWN+++
Sbjct: 934 LNEDVLRNIYSDSTTTNAIEEEFRQLKDDREMLRN-IFPNGNKKVNLPVKLSRLIWNSQK 992
Query: 230 IFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352
+F V ++DLSP K++ ++ L R V+ ++ +A
Sbjct: 993 MFKVNLRAQTDLSPLKVINDIKDLTKRLLVVKGEDKLSKEA 1033
[118][TOP]
>UniRef100_UPI00019270BB PREDICTED: similar to DNA-directed RNA polymerase II subunit RPB1
isoform 1 n=1 Tax=Hydra magnipapillata
RepID=UPI00019270BB
Length = 2041
Score = 67.8 bits (164), Expect = 4e-10
Identities = 34/101 (33%), Positives = 60/101 (59%)
Frame = +2
Query: 50 LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 229
L++ L +I+S T + +E+ QLK DR+ LR+ +F G K+ L V + RLIWN+++
Sbjct: 935 LNEDVLRNIYSDSTTTNAIEEEFRQLKDDREMLRN-IFPNGNKKVNLPVKLSRLIWNSQK 993
Query: 230 IFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352
+F V ++DLSP K++ ++ L R V+ ++ +A
Sbjct: 994 MFKVNLRAQTDLSPLKVINDIKDLTKRLLVVKGEDKLSKEA 1034
[119][TOP]
>UniRef100_Q2TUN8 DNA-directed RNA polymerase (Fragment) n=1 Tax=Taxus canadensis
RepID=Q2TUN8_TAXCA
Length = 1013
Score = 67.8 bits (164), Expect = 4e-10
Identities = 34/109 (31%), Positives = 61/109 (55%)
Frame = +2
Query: 26 QESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIE 205
QE+ N Y+ ++D+ + + + E +L+ DR L E+ TG+ P+ VN++
Sbjct: 843 QENWNPSYMLPEHVDDLKTIREFQNVFDAELQKLESDRRQLGTEIATTGDNSWPMPVNLK 902
Query: 206 RLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352
RLIWNA++ F + RSD+ P +IV ++ L R +V+ D+ ++A
Sbjct: 903 RLIWNAQKTFKIDPRKRSDMHPMEIVEAIDKLQERLKVVPGDDLMSIEA 951
[120][TOP]
>UniRef100_O02416 RNA polymerase II largest subunit (Fragment) n=1 Tax=Aphonopelma
chalcodes RepID=O02416_APHCH
Length = 240
Score = 67.8 bits (164), Expect = 4e-10
Identities = 35/112 (31%), Positives = 63/112 (56%), Gaps = 4/112 (3%)
Frame = +2
Query: 29 ESSNSPYL----SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 196
+++N YL ++ + D+ KEW +LK DR+ LR +F TG +++ L
Sbjct: 80 DAANERYLRRIFTEDVVRDLLGSSTALSEFEKEWERLKTDREVLRI-IFPTGNSRVVLPC 138
Query: 197 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352
N+ R+IWNA++IF V +DLSP +++ GVE L+ + ++ ++ + A
Sbjct: 139 NLLRMIWNAQKIFHVNTRAPTDLSPLRVIHGVEELVKKLVIVPGEDRLSIQA 190
[121][TOP]
>UniRef100_Q6E233 RNA polymerase 2 (Fragment) n=1 Tax=Caenorhabditis remanei
RepID=Q6E233_CAERE
Length = 611
Score = 67.4 bits (163), Expect = 5e-10
Identities = 34/100 (34%), Positives = 59/100 (59%)
Frame = +2
Query: 53 SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRI 232
S+ + +I D L+ EW+QL++DR LR ++F G+AK+ L N++RLIWNA++I
Sbjct: 127 SEDVVREIQESEDGISLVESEWSQLEEDRRLLR-KIFPRGDAKIVLPCNLQRLIWNAQKI 185
Query: 233 FDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352
F V +LSP ++ GV L + +++ +++ A
Sbjct: 186 FKVDLRKPVNLSPLHVINGVRELSKKLIIVSGNDEISKQA 225
[122][TOP]
>UniRef100_Q2N162 DNA-directed RNA polymerase II largest subunit (Fragment) n=1
Tax=Suberites fuscus RepID=Q2N162_9METZ
Length = 260
Score = 67.4 bits (163), Expect = 5e-10
Identities = 35/96 (36%), Positives = 56/96 (58%)
Frame = +2
Query: 65 LNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVR 244
+ D+ + L EW QL +DR+ +R VF TG +K+ L VN+ RLIWNA++IF V
Sbjct: 87 VRDLLTSSTAQTELESEWQQLCQDREIVR-SVFPTGNSKIVLPVNLNRLIWNAQKIFHVD 145
Query: 245 QNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352
++DL P K+V GV L ++ ++ +++ A
Sbjct: 146 IRGQTDLHPLKVVEGVRDLSNKLIIVQGEDELSKQA 181
[123][TOP]
>UniRef100_Q25203 DNA-directed RNA polymerase (Fragment) n=1 Tax=Ilyanassa obsoleta
RepID=Q25203_9CAEN
Length = 1343
Score = 67.4 bits (163), Expect = 5e-10
Identities = 34/95 (35%), Positives = 54/95 (56%)
Frame = +2
Query: 50 LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 229
L + + + + E L EW QL DRD R +VF TG+A++ L N++R+IWNA++
Sbjct: 848 LKEDVIKGLRGEHRLIEELESEWLQLISDRDSAR-QVFSTGDARIVLPCNLQRMIWNAQK 906
Query: 230 IFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
IF + + SDL P +V GV L R ++ ++
Sbjct: 907 IFRIDKRKPSDLDPINVVSGVRDLCQRLTIVEGED 941
[124][TOP]
>UniRef100_A9QMQ9 DNA-directed RNA polymerase (Fragment) n=1 Tax=Caenorhabditis sp.
JU727 RepID=A9QMQ9_9PELO
Length = 620
Score = 67.4 bits (163), Expect = 5e-10
Identities = 34/100 (34%), Positives = 59/100 (59%)
Frame = +2
Query: 53 SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRI 232
S+ + +I D L+ EW+QL++DR LR ++F G+AK+ L N++RLIWNA++I
Sbjct: 144 SEDVVREIQESTDGISLVESEWSQLEEDRRLLR-KIFPRGDAKIVLPCNLQRLIWNAQKI 202
Query: 233 FDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352
F V +LSP ++ GV L + +++ +++ A
Sbjct: 203 FKVDLRKPVNLSPLHVINGVRELSKKLIIVSGNDEISKQA 242
[125][TOP]
>UniRef100_Q2PYP9 DNA-directed RNA polymerase (Fragment) n=1 Tax=Neocallimastix sp.
GE13 RepID=Q2PYP9_9FUNG
Length = 813
Score = 67.4 bits (163), Expect = 5e-10
Identities = 41/118 (34%), Positives = 62/118 (52%), Gaps = 1/118 (0%)
Frame = +2
Query: 2 LTEPDLHLQESSNSPYLSQAALNDIHSGGDVT-ELLAKEWAQLKKDRDFLRHEVFKTGEA 178
LT+ D L+ + L + L D+ +V E L +E+ L++DR R +FK G++
Sbjct: 638 LTDKDFGLKPKT----LQFSILEDLAQQSNVVQEKLDEEYKSLQEDRKLFREFIFKNGDS 693
Query: 179 KLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352
PL VN+ RLIWNA+ IF + + SDL P I + LL R V+ D+ +A
Sbjct: 694 SWPLPVNVRRLIWNAQNIFSINKRKESDLHPLYICEKRDELLKRLVVVRGDDKLSKEA 751
[126][TOP]
>UniRef100_A1YIC6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Neocallimastix
frontalis RepID=A1YIC6_NEOFR
Length = 1004
Score = 67.4 bits (163), Expect = 5e-10
Identities = 41/118 (34%), Positives = 62/118 (52%), Gaps = 1/118 (0%)
Frame = +2
Query: 2 LTEPDLHLQESSNSPYLSQAALNDIHSGGDVT-ELLAKEWAQLKKDRDFLRHEVFKTGEA 178
LT+ D L+ + L + L D+ +V E L +E+ L++DR R +FK G++
Sbjct: 824 LTDKDFGLKPKT----LQFSILEDLAQQSNVVQEKLDEEYKSLQEDRKLFREFIFKNGDS 879
Query: 179 KLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352
PL VN+ RLIWNA+ IF + + SDL P I + LL R V+ D+ +A
Sbjct: 880 SWPLPVNVRRLIWNAQNIFSINKRKESDLHPLYICEKRDELLKRLVVVRGDDKLSKEA 937
[127][TOP]
>UniRef100_P35084 DNA-directed RNA polymerase II subunit rpb1 n=1 Tax=Dictyostelium
discoideum RepID=RPB1_DICDI
Length = 1727
Score = 67.4 bits (163), Expect = 5e-10
Identities = 32/101 (31%), Positives = 60/101 (59%)
Frame = +2
Query: 47 YLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAK 226
++ + + + + L KE+ ++K DR LR+E+ +GEA PL VN+ RLI NA+
Sbjct: 919 WMDPLVIEHVRNDSLTRDTLEKEFERIKSDRSLLRNEIIPSGEANWPLPVNLRRLINNAQ 978
Query: 227 RIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVD 349
++F++ SDL+P+ +V +E L+ R +++ + + E D
Sbjct: 979 KLFNIDIRRVSDLNPAVVVLEIEKLVARLKIIATADTTEDD 1019
[128][TOP]
>UniRef100_P35074 DNA-directed RNA polymerase II subunit RPB1 n=1 Tax=Caenorhabditis
briggsae RepID=RPB1_CAEBR
Length = 1853
Score = 67.4 bits (163), Expect = 5e-10
Identities = 34/100 (34%), Positives = 59/100 (59%)
Frame = +2
Query: 53 SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRI 232
S+ + +I D L+ EW+QL++DR LR ++F G+AK+ L N++RLIWNA++I
Sbjct: 929 SEDVVREIQEAQDGISLVESEWSQLEEDRRLLR-KIFPRGDAKIVLPCNLQRLIWNAQKI 987
Query: 233 FDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352
F V +LSP ++ GV L + +++ +++ A
Sbjct: 988 FKVDLRKPVNLSPLHVINGVRELSKKLIIVSGNDEISKQA 1027
[129][TOP]
>UniRef100_Q9XZU9 DNA-directed RNA polymerase n=1 Tax=Drosophila subobscura
RepID=Q9XZU9_DROSU
Length = 1889
Score = 67.0 bits (162), Expect = 6e-10
Identities = 33/101 (32%), Positives = 59/101 (58%), Gaps = 4/101 (3%)
Frame = +2
Query: 35 SNSPYLSQA----ALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNI 202
SN Y+ + + ++ + + L EW L DRD LR +F G++K+ L N+
Sbjct: 917 SNERYMRKVFTDEVIKEMTDSSEAIQDLESEWDHLMHDRDNLR-VIFPNGDSKVVLPCNL 975
Query: 203 ERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLT 325
+R+IWN ++IF + + +DLSP ++++GV+ LL R ++T
Sbjct: 976 QRMIWNVQKIFHINKRLPTDLSPMRVIKGVKTLLERCVIVT 1016
[130][TOP]
>UniRef100_Q9XZS1 DNA-directed RNA polymerase n=1 Tax=Drosophila guanche
RepID=Q9XZS1_DROGU
Length = 1889
Score = 67.0 bits (162), Expect = 6e-10
Identities = 33/101 (32%), Positives = 59/101 (58%), Gaps = 4/101 (3%)
Frame = +2
Query: 35 SNSPYLSQA----ALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNI 202
SN Y+ + + ++ + + L EW L DRD LR +F G++K+ L N+
Sbjct: 917 SNERYMRKVFTDEVIKEMTDSSEAIQDLESEWDHLMHDRDNLR-VIFPNGDSKVVLPCNL 975
Query: 203 ERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLT 325
+R+IWN ++IF + + +DLSP ++++GV+ LL R ++T
Sbjct: 976 QRMIWNVQKIFHINKRLPTDLSPMRVIKGVKTLLERCVIVT 1016
[131][TOP]
>UniRef100_Q6E231 RNA polymerase 2 (Fragment) n=1 Tax=Caenorhabditis brenneri
RepID=Q6E231_CAEBE
Length = 596
Score = 67.0 bits (162), Expect = 6e-10
Identities = 34/102 (33%), Positives = 60/102 (58%)
Frame = +2
Query: 47 YLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAK 226
+ S+ + +I D L+ EW+QL++DR LR ++F G+AK+ L N++RLIWNA+
Sbjct: 117 HYSEDVVREIQESLDGISLVESEWSQLEEDRRLLR-KIFPRGDAKIVLPCNLQRLIWNAQ 175
Query: 227 RIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352
+IF V +LSP ++ GV L + +++ +++ A
Sbjct: 176 KIFKVDLRKPVNLSPLHVINGVRELSKKLIIVSGNDEISKQA 217
[132][TOP]
>UniRef100_P16356 DNA-directed RNA polymerase II subunit RPB1 n=1 Tax=Caenorhabditis
elegans RepID=RPB1_CAEEL
Length = 1852
Score = 67.0 bits (162), Expect = 6e-10
Identities = 34/100 (34%), Positives = 59/100 (59%)
Frame = +2
Query: 53 SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRI 232
S+ + +I D L+ EW+QL++DR LR ++F G+AK+ L N++RLIWNA++I
Sbjct: 925 SEDVVREIQESEDGISLVESEWSQLEEDRRLLR-KIFPRGDAKIVLPCNLQRLIWNAQKI 983
Query: 233 FDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352
F V +LSP ++ GV L + +++ +++ A
Sbjct: 984 FKVDLRKPVNLSPLHVISGVRELSKKLIIVSGNDEISKQA 1023
[133][TOP]
>UniRef100_UPI00017B0A92 UPI00017B0A92 related cluster n=1 Tax=Tetraodon nigroviridis
RepID=UPI00017B0A92
Length = 1714
Score = 66.6 bits (161), Expect = 8e-10
Identities = 31/95 (32%), Positives = 57/95 (60%)
Frame = +2
Query: 50 LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 229
L + + D+ + V L +E+ ++K+DR+ LR +F TG++K+ L N+ R+IWNA++
Sbjct: 912 LQEDVVKDVMTNAHVQSSLEREFEKMKEDREILR-AIFPTGDSKVVLPCNLARMIWNAQK 970
Query: 230 IFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
IF + +DLSP ++V G L + ++ D+
Sbjct: 971 IFRINTRTPTDLSPLRVVEGTHELSKKLVIVNGDD 1005
[134][TOP]
>UniRef100_Q1ACV3 RNA polymerase II largest subunit (Fragment) n=1 Tax=Acer palmatum
RepID=Q1ACV3_ACEPM
Length = 240
Score = 66.6 bits (161), Expect = 8e-10
Identities = 32/109 (29%), Positives = 64/109 (58%)
Frame = +2
Query: 26 QESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIE 205
Q++ N Y+ Q ++++ + ++ ++ E +L+ DR L E+ +G++ P+ VN++
Sbjct: 73 QDNWNPNYMLQEFIDBLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPMPVNLK 132
Query: 206 RLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352
RLIWNA++ F V SD+ P ++V ++ L R +V+ D+ V+A
Sbjct: 133 RLIWNAQKTFKVDPRRPSDMHPMEVVEAIDKLQERLKVVPGDDALSVEA 181
[135][TOP]
>UniRef100_Q6E227 RNA polymerase 2 (Fragment) n=1 Tax=Caenorhabditis japonica
RepID=Q6E227_CAEJA
Length = 608
Score = 66.6 bits (161), Expect = 8e-10
Identities = 34/100 (34%), Positives = 58/100 (58%)
Frame = +2
Query: 53 SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRI 232
S+ + +I D L+ EW+QL++DR LR ++F G+AK+ L N++RLIWNA++I
Sbjct: 127 SEDVVREIQESEDGISLVESEWSQLEEDRRLLR-KIFPRGDAKIVLPCNLQRLIWNAQKI 185
Query: 233 FDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352
F V +LSP ++ GV L + ++ +++ A
Sbjct: 186 FKVDLRKPVNLSPLHVINGVRELSKKLIIVCGNDEISKQA 225
[136][TOP]
>UniRef100_Q6E225 DNA-directed RNA polymerase (Fragment) n=1 Tax=Caenorhabditis sp.
SB341 RepID=Q6E225_9PELO
Length = 622
Score = 66.6 bits (161), Expect = 8e-10
Identities = 37/113 (32%), Positives = 63/113 (55%)
Frame = +2
Query: 14 DLHLQESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLA 193
DL + + S Y + + + D E + EW QL++DR LR ++F TG+AK+ L
Sbjct: 132 DLADERTLKSCY-EEHVVRQLKEAPDAIEKVEAEWNQLEEDRRLLR-KIFPTGDAKVVLP 189
Query: 194 VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352
N++RLIWNA++IF V ++LSP ++ GV + + +++ +D A
Sbjct: 190 CNLQRLIWNAQKIFKVDLRKPTNLSPLHVIEGVREVSKKLIIVSGSDDISKQA 242
[137][TOP]
>UniRef100_Q2N108 DNA-directed RNA polymerase II largest subunit (Fragment) n=1
Tax=Aphrocallistes vastus RepID=Q2N108_9METZ
Length = 254
Score = 66.6 bits (161), Expect = 8e-10
Identities = 32/111 (28%), Positives = 62/111 (55%)
Frame = +2
Query: 20 HLQESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVN 199
+ E ++S+ ++++ + +E+A+L DR LR E+FK G +K+ L N
Sbjct: 81 YTNERQLKKFISEDVIHELGVNPEAQAKFEEEFARLHDDRMILR-EIFKDGNSKVVLPCN 139
Query: 200 IERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352
+ R+IWNA++ F + + SDL+P K++ GVE L + ++ ++ +A
Sbjct: 140 LSRMIWNAQKTFKINTRNNSDLNPLKVIEGVEELCKKLVIVDGEDSISKEA 190
[138][TOP]
>UniRef100_Q17085 DNA-directed RNA polymerase (Fragment) n=1 Tax=Artemia salina
RepID=Q17085_ARTSA
Length = 1341
Score = 66.6 bits (161), Expect = 8e-10
Identities = 39/107 (36%), Positives = 62/107 (57%), Gaps = 4/107 (3%)
Frame = +2
Query: 29 ESSNSPYLSQAALNDIHSG----GDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 196
+ SN L + D+ +V + KEW L KDR+ LR +VF +GE K+ L
Sbjct: 835 DPSNERQLRKTFTEDVTKSLLGDSEVITEIEKEWEALVKDREALR-KVFPSGENKVVLPC 893
Query: 197 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDED 337
N++R+IWNA++ F + + SDLSP ++++GV LL + V+ + ED
Sbjct: 894 NLQRMIWNAQKTFHINKRMPSDLSPLRVIQGVRDLL-KNCVIVNGED 939
[139][TOP]
>UniRef100_O02454 RNA polymerase II largest subunit (Fragment) n=1 Tax=Narceus
americanus RepID=O02454_9MYRI
Length = 227
Score = 66.6 bits (161), Expect = 8e-10
Identities = 35/79 (44%), Positives = 50/79 (63%)
Frame = +2
Query: 104 LAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIV 283
L KEW L++DRD LR +F G+ K+ L N++R+IWNA++IF + +DLSP K++
Sbjct: 96 LEKEWEALRRDRDVLR-SIFPKGDNKVVLPCNLQRMIWNAQKIFHINLRAPTDLSPLKVI 154
Query: 284 RGVELLLHRTRVLTSDEDA 340
GV L R V+ EDA
Sbjct: 155 DGVR-ELSRKLVIVPGEDA 172
[140][TOP]
>UniRef100_A8PU11 DNA-directed RNA polymerase n=1 Tax=Brugia malayi RepID=A8PU11_BRUMA
Length = 1943
Score = 66.6 bits (161), Expect = 8e-10
Identities = 34/103 (33%), Positives = 61/103 (59%)
Frame = +2
Query: 29 ESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIER 208
E S ++ + ++ + + + EW QL++DR LR ++F G+AK+ L N++R
Sbjct: 992 EKSLRKLYTENVVRELQGSAEALKEVEAEWGQLEEDRRLLR-KIFPKGDAKIVLPCNLQR 1050
Query: 209 LIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDED 337
+IWNA++IF V +DL+P +++ GV+ L + V+ S ED
Sbjct: 1051 MIWNAQKIFRVELRKPTDLNPLRVIEGVK-ELSKKLVIVSGED 1092
[141][TOP]
>UniRef100_Q9C428 DNA-directed RNA polymerase (Fragment) n=1 Tax=Monoblepharis
macrandra RepID=Q9C428_9FUNG
Length = 1603
Score = 66.6 bits (161), Expect = 8e-10
Identities = 32/79 (40%), Positives = 51/79 (64%)
Frame = +2
Query: 98 ELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSK 277
++L E+ QL +DR+ +R+ +F+ G++ PL NI RLIWNA+ + + N S+L P +
Sbjct: 872 KVLEMEYTQLVEDRNVMRNFIFRNGDSNWPLPSNIRRLIWNARNMAKISHNTLSNLRPEE 931
Query: 278 IVRGVELLLHRTRVLTSDE 334
IVR V LL R V+T ++
Sbjct: 932 IVRDVNDLLSRCIVITGED 950
[142][TOP]
>UniRef100_Q0D054 DNA-directed RNA polymerase n=1 Tax=Aspergillus terreus NIH2624
RepID=Q0D054_ASPTN
Length = 1742
Score = 66.6 bits (161), Expect = 8e-10
Identities = 40/113 (35%), Positives = 64/113 (56%)
Frame = +2
Query: 14 DLHLQESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLA 193
DL E S P + + A N+I +V L +EW QL KDR FLR V K E + L
Sbjct: 921 DLMDPERSLGPEILEQA-NEIAGDVEVQRYLDEEWEQLLKDRAFLR-TVAKEDEEMMQLP 978
Query: 194 VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352
+N++R++ A+ F +R+ SDL P++++ V+ LL R +++ D+ V+A
Sbjct: 979 INVQRILETARSTFRIREGTISDLHPAEVIPQVQSLLDRLKIVRGDDIISVEA 1031
[143][TOP]
>UniRef100_UPI0000546D90 PREDICTED: im:7136071 isoform 1 n=1 Tax=Danio rerio
RepID=UPI0000546D90
Length = 1972
Score = 66.2 bits (160), Expect = 1e-09
Identities = 30/95 (31%), Positives = 60/95 (63%)
Frame = +2
Query: 50 LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 229
L + + D+ + V L +E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++
Sbjct: 931 LQEDVVKDVMTNAHVQSSLEREFEKMREDREILR-AIFPTGDSKVVLPCNLARMIWNAQK 989
Query: 230 IFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
IF + +DL+P+++V GV+ L + ++ D+
Sbjct: 990 IFRINPRAPTDLNPARVVDGVKELSKKLVIVNGDD 1024
[144][TOP]
>UniRef100_UPI00016E658E UPI00016E658E related cluster n=1 Tax=Takifugu rubripes
RepID=UPI00016E658E
Length = 1628
Score = 66.2 bits (160), Expect = 1e-09
Identities = 31/95 (32%), Positives = 57/95 (60%)
Frame = +2
Query: 50 LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 229
L + + D+ + V L +E+ ++K+DR+ LR +F TG++K+ L N+ R+IWNA++
Sbjct: 932 LQEDVVKDVMTNAHVQSSLEREFEKMKEDREILR-AIFPTGDSKVVLPCNLARMIWNAQK 990
Query: 230 IFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
IF + +DLSP ++V G L + ++ D+
Sbjct: 991 IFRINTRTPTDLSPLRVVEGTHDLSKKLVIVNGDD 1025
[145][TOP]
>UniRef100_Q2TUN9 DNA-directed RNA polymerase (Fragment) n=1 Tax=Thuja occidentalis
RepID=Q2TUN9_THUOC
Length = 1013
Score = 66.2 bits (160), Expect = 1e-09
Identities = 33/109 (30%), Positives = 61/109 (55%)
Frame = +2
Query: 26 QESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIE 205
QE+ N Y+ ++D+ + + + E +L+ DR L E+ +G+ P+ VN++
Sbjct: 843 QENWNPSYMLPEHVDDLKTIREFQNVFDAELQKLESDRRQLGTEIAPSGDNSWPMPVNLK 902
Query: 206 RLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352
RLIWNA++ F + RSD+ P +IV ++ L R +V+ D+ ++A
Sbjct: 903 RLIWNAQKTFKIDPRKRSDMHPMEIVEAIDKLQERLKVVPGDDLISIEA 951
[146][TOP]
>UniRef100_Q1ACT1 RNA polymerase II largest subunit (Fragment) n=1 Tax=Quercus
coccinea RepID=Q1ACT1_9ROSI
Length = 240
Score = 66.2 bits (160), Expect = 1e-09
Identities = 36/108 (33%), Positives = 59/108 (54%)
Frame = +2
Query: 29 ESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIER 208
E N Y+ Q + D+ + + + E +L+ DR L E+ TG+ PL VN++R
Sbjct: 74 EHWNPDYMMQEHIEDLKTIREFRNVFDAEVQKLEADRFQLGTEIATTGDNTWPLPVNLKR 133
Query: 209 LIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352
LIWNA++IF + SD+ P +IV V+ L R +V+ ++ V+A
Sbjct: 134 LIWNAQKIFKIDNRRHSDMHPMEIVEAVDKLQERLKVVPGEDLLSVEA 181
[147][TOP]
>UniRef100_A9TK89 DNA-directed RNA polymerase n=1 Tax=Physcomitrella patens subsp.
patens RepID=A9TK89_PHYPA
Length = 1646
Score = 66.2 bits (160), Expect = 1e-09
Identities = 35/88 (39%), Positives = 52/88 (59%)
Frame = +2
Query: 89 DVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLS 268
D + E ++L+ DR + E+ TGEA PL VN++RLIWNA++IF V SD+
Sbjct: 930 DYINVFDAEVSKLEADRRQMGLEIAPTGEANWPLPVNLKRLIWNAQKIFKVDFRKPSDMH 989
Query: 269 PSKIVRGVELLLHRTRVLTSDEDAEVDA 352
P +IV V+ L R RV+ D+ ++A
Sbjct: 990 PMEIVEAVDKLQERLRVVPGDDQISMEA 1017
[148][TOP]
>UniRef100_Q6E232 RNA polymersae 2 (Fragment) n=1 Tax=Caenorhabditis sp. PS1010
RepID=Q6E232_9PELO
Length = 601
Score = 66.2 bits (160), Expect = 1e-09
Identities = 32/100 (32%), Positives = 57/100 (57%)
Frame = +2
Query: 53 SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRI 232
++ + ++ + E + EWAQL +DR LR ++F G+AK+ L N++RL+WNA++I
Sbjct: 127 TEDVIRELQESSEAIEKIESEWAQLSEDRRLLR-KIFPKGDAKIVLPCNLQRLMWNAQKI 185
Query: 233 FDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352
F V +LSP ++ GV L + ++ ++D A
Sbjct: 186 FKVDTRKPVNLSPLHVIDGVRELSKKLIIVCGNDDISKQA 225
[149][TOP]
>UniRef100_O01376 DNA-directed RNA polymerase (Fragment) n=1 Tax=unidentified
nematode RepID=O01376_9BILA
Length = 633
Score = 66.2 bits (160), Expect = 1e-09
Identities = 32/100 (32%), Positives = 57/100 (57%)
Frame = +2
Query: 53 SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRI 232
++ + ++ + E + EWAQL +DR LR ++F G+AK+ L N++RL+WNA++I
Sbjct: 140 TEDVIRELQESSEAIEKIESEWAQLSEDRRLLR-KIFPKGDAKIVLPCNLQRLMWNAQKI 198
Query: 233 FDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352
F V +LSP ++ GV L + ++ ++D A
Sbjct: 199 FKVDTRKPVNLSPLHVIDGVRELSKKLIIVCGNDDISKQA 238
[150][TOP]
>UniRef100_A9QMQ7 DNA-directed RNA polymerase (Fragment) n=1 Tax=Phasmarhabditis sp.
EM434 RepID=A9QMQ7_9BILA
Length = 398
Score = 66.2 bits (160), Expect = 1e-09
Identities = 36/108 (33%), Positives = 64/108 (59%)
Frame = +2
Query: 14 DLHLQESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLA 193
DL ++S Y ++ +++ + + EW QL++DR LR ++F +G+AK+ L
Sbjct: 132 DLSDEKSLRKMY-TEDVQHELQGSSEALKEAEDEWNQLEEDRRLLR-KIFPSGDAKIVLP 189
Query: 194 VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDED 337
N++RLIWNA++IF V +DL+P +++ GV L + ++ S ED
Sbjct: 190 CNLQRLIWNAQKIFHVETRKPTDLNPLRVIEGVR-ELSKKLIIVSGED 236
[151][TOP]
>UniRef100_A1YIC2 DNA-directed RNA polymerase (Fragment) n=1 Tax=Coelomomyces
stegomyiae RepID=A1YIC2_9FUNG
Length = 1014
Score = 66.2 bits (160), Expect = 1e-09
Identities = 34/88 (38%), Positives = 56/88 (63%)
Frame = +2
Query: 89 DVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLS 268
DV +LL +E++QLK DR LR ++F TG+A PL +N++R+IWNA+ +F + + S+L
Sbjct: 861 DVQKLLDEEFSQLKDDRACLR-KIFLTGDANWPLPMNLKRIIWNAQNLFKIDKQRPSNLH 919
Query: 269 PSKIVRGVELLLHRTRVLTSDEDAEVDA 352
P +V V L + V+ D+ ++A
Sbjct: 920 PDYVVNQVRGLCDKLTVIRGDDKISLEA 947
[152][TOP]
>UniRef100_UPI0000E12351 Os05g0151000 n=1 Tax=Oryza sativa Japonica Group RepID=UPI0000E12351
Length = 2085
Score = 65.9 bits (159), Expect = 1e-09
Identities = 33/102 (32%), Positives = 57/102 (55%)
Frame = +2
Query: 47 YLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAK 226
YLS D+ + ++ + E +L+ DR L E+ TG+ P+ VN++RLIWNA+
Sbjct: 929 YLSTQHAEDLKTISEIRNVFEAEVQKLEADRFQLGTEIATTGDNTWPMPVNLKRLIWNAQ 988
Query: 227 RIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352
+ F + SD+ P +IV ++ L R +V+ D+D ++A
Sbjct: 989 KTFKIDLRRPSDMHPMEIVDAIDKLQERLKVVPGDDDISIEA 1030
[153][TOP]
>UniRef100_Q5WMZ9 DNA-directed RNA polymerase n=1 Tax=Oryza sativa Japonica Group
RepID=Q5WMZ9_ORYSJ
Length = 1741
Score = 65.9 bits (159), Expect = 1e-09
Identities = 33/102 (32%), Positives = 57/102 (55%)
Frame = +2
Query: 47 YLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAK 226
YLS D+ + ++ + E +L+ DR L E+ TG+ P+ VN++RLIWNA+
Sbjct: 876 YLSTQHAEDLKTISEIRNVFEAEVQKLEADRFQLGTEIATTGDNTWPMPVNLKRLIWNAQ 935
Query: 227 RIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352
+ F + SD+ P +IV ++ L R +V+ D+D ++A
Sbjct: 936 KTFKIDLRRPSDMHPMEIVDAIDKLQERLKVVPGDDDISIEA 977
[154][TOP]
>UniRef100_Q0DKN9 DNA-directed RNA polymerase n=1 Tax=Oryza sativa Japonica Group
RepID=Q0DKN9_ORYSJ
Length = 1834
Score = 65.9 bits (159), Expect = 1e-09
Identities = 33/102 (32%), Positives = 57/102 (55%)
Frame = +2
Query: 47 YLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAK 226
YLS D+ + ++ + E +L+ DR L E+ TG+ P+ VN++RLIWNA+
Sbjct: 929 YLSTQHAEDLKTISEIRNVFEAEVQKLEADRFQLGTEIATTGDNTWPMPVNLKRLIWNAQ 988
Query: 227 RIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352
+ F + SD+ P +IV ++ L R +V+ D+D ++A
Sbjct: 989 KTFKIDLRRPSDMHPMEIVDAIDKLQERLKVVPGDDDISIEA 1030
[155][TOP]
>UniRef100_Q2PYS1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Basidiobolus ranarum
RepID=Q2PYS1_9FUNG
Length = 1015
Score = 65.9 bits (159), Expect = 1e-09
Identities = 33/96 (34%), Positives = 54/96 (56%)
Frame = +2
Query: 65 LNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVR 244
L D+ +L +E+ QL DR LR +F +G+ PL N++RL+WNA+ IF +
Sbjct: 858 LKDVEGNDSTQMMLDEEYRQLCDDRRVLREFIFTSGDQAWPLPGNLKRLVWNAQNIFHID 917
Query: 245 QNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352
+ S+L P +I+ GV+LL+ R V+ + +A
Sbjct: 918 KRKPSNLHPLQIIEGVKLLIDRLVVVRGSDKLSNEA 953
[156][TOP]
>UniRef100_C3U0B8 DNA-directed RNA polymerase (Fragment) n=1 Tax=Gymnoascus reesii
RepID=C3U0B8_9EURO
Length = 618
Score = 65.9 bits (159), Expect = 1e-09
Identities = 41/113 (36%), Positives = 64/113 (56%)
Frame = +2
Query: 14 DLHLQESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLA 193
DL ES+ SP + + A +I +V + L +EW QL DR FLR V K E K+ L
Sbjct: 447 DLMDPESTLSPDILEQA-GEIAGDMEVQKYLDEEWEQLVADRKFLR-SVAKEDEEKMQLP 504
Query: 194 VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352
+N++R++ +AK F +R SDL P++++ V+ LL R V+ D+ +A
Sbjct: 505 INVQRILESAKTAFRIRDGTISDLHPAEVIPQVQALLDRLLVVRGDDPISKEA 557
[157][TOP]
>UniRef100_A1YIB9 DNA-directed RNA polymerase (Fragment) n=1 Tax=Allomyces macrogynus
RepID=A1YIB9_ALLMA
Length = 1008
Score = 65.9 bits (159), Expect = 1e-09
Identities = 33/88 (37%), Positives = 55/88 (62%)
Frame = +2
Query: 89 DVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLS 268
+V +LL +E+ QL++DR+ LRH +F G+A+ PL NI+R+IWNA+ +F + + S+L
Sbjct: 855 EVQQLLDQEYRQLEEDRERLRH-IFPRGDARWPLPGNIQRIIWNAQNLFKIDKTKPSNLH 913
Query: 269 PSKIVRGVELLLHRTRVLTSDEDAEVDA 352
P +V V L + V+ + V+A
Sbjct: 914 PEYVVNEVRKLCDKLMVIPGTDKISVEA 941
[158][TOP]
>UniRef100_P18616 DNA-directed RNA polymerase II subunit RPB1 n=1 Tax=Arabidopsis
thaliana RepID=RPB1_ARATH
Length = 1840
Score = 65.9 bits (159), Expect = 1e-09
Identities = 37/108 (34%), Positives = 60/108 (55%)
Frame = +2
Query: 29 ESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIER 208
E+ N YLS L D+ ++ ++ E+++L+ DR L E+ G++ PL VNI+R
Sbjct: 924 ENWNPTYLSDEHLEDLKGIRELRDVFDAEYSKLETDRFQLGTEIATNGDSTWPLPVNIKR 983
Query: 209 LIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352
IWNA++ F + SD+ P +IV V+ L R V+ D+ V+A
Sbjct: 984 HIWNAQKTFKIDLRKISDMHPVEIVDAVDKLQERLLVVPGDDALSVEA 1031
[159][TOP]
>UniRef100_Q9BNJ6 RNA polymerase II largest subunit (Fragment) n=1 Tax=Pachymerium
ferrugineum RepID=Q9BNJ6_9MYRI
Length = 238
Score = 65.5 bits (158), Expect = 2e-09
Identities = 31/90 (34%), Positives = 53/90 (58%)
Frame = +2
Query: 65 LNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVR 244
+ D+ + L KEW LKKDR+ LR VF G++K+ L N+ R+IWNA++IF +
Sbjct: 94 VKDLMGSSHIVTQLEKEWETLKKDREVLR-SVFPKGDSKVVLPCNLPRMIWNAQKIFHIN 152
Query: 245 QNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
+DL+P +++ GV L + ++ ++
Sbjct: 153 TRTPTDLTPLRVLDGVRELSSKIIIVPGED 182
[160][TOP]
>UniRef100_C3ZES3 DNA-directed RNA polymerase n=1 Tax=Branchiostoma floridae
RepID=C3ZES3_BRAFL
Length = 1934
Score = 65.5 bits (158), Expect = 2e-09
Identities = 37/103 (35%), Positives = 58/103 (56%)
Frame = +2
Query: 50 LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 229
L + + +I S + + E+ QL+ DRD LR V +TG+AK+ L N+ R+IWNA++
Sbjct: 930 LQEDIVREITSDARLQTEIEAEFEQLRVDRDVLR-SVNQTGDAKVALPCNLARIIWNAQK 988
Query: 230 IFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIA 358
IF V +DL P K+V GV L + ++ D+ + A A
Sbjct: 989 IFHVNTRAPTDLHPIKVVEGVRDLSRKLVIVKGDDPISIQAQA 1031
[161][TOP]
>UniRef100_A9QMG9 DNA-directed RNA polymerase (Fragment) n=1 Tax=Poikilolaimus
regenfussi RepID=A9QMG9_9BILA
Length = 620
Score = 65.5 bits (158), Expect = 2e-09
Identities = 29/74 (39%), Positives = 51/74 (68%)
Frame = +2
Query: 113 EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 292
EWAQL++DR LR ++F G+AK+ L N++RLIWNA+++F V +++L+P +++ GV
Sbjct: 156 EWAQLEEDRRLLR-KIFPKGDAKVVLPCNLQRLIWNAQKVFHVETRKQTELNPLRVIEGV 214
Query: 293 ELLLHRTRVLTSDE 334
L + ++ D+
Sbjct: 215 RELSKKLVIVGGDD 228
[162][TOP]
>UniRef100_B4E3V7 DNA-directed RNA polymerase n=1 Tax=Homo sapiens RepID=B4E3V7_HUMAN
Length = 1935
Score = 65.5 bits (158), Expect = 2e-09
Identities = 32/95 (33%), Positives = 58/95 (61%)
Frame = +2
Query: 50 LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 229
L + + D+ S + L +E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++
Sbjct: 899 LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 957
Query: 230 IFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
IF + SDL P K+V GV+ L + ++ D+
Sbjct: 958 IFHINPRLPSDLHPIKVVEGVKKLSKKLVIVNGDD 992
[163][TOP]
>UniRef100_A1YIB6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Basidiobolus ranarum
RepID=A1YIB6_9FUNG
Length = 1018
Score = 65.5 bits (158), Expect = 2e-09
Identities = 33/96 (34%), Positives = 53/96 (55%)
Frame = +2
Query: 65 LNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVR 244
L D+ +L +E+ QL DR LR +F +G+ PL N+ RL+WNA+ IF +
Sbjct: 856 LKDVEGNDSTQMMLDEEYRQLCDDRRVLREFIFTSGDQAWPLPGNLRRLVWNAQNIFHID 915
Query: 245 QNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352
+ S+L P +I+ GV+LL+ R V+ + +A
Sbjct: 916 KRKPSNLHPLQIIEGVKLLIDRLIVVRGSDKLSNEA 951
[164][TOP]
>UniRef100_UPI000186501C hypothetical protein BRAFLDRAFT_115025 n=1 Tax=Branchiostoma floridae
RepID=UPI000186501C
Length = 1956
Score = 65.1 bits (157), Expect = 2e-09
Identities = 37/103 (35%), Positives = 58/103 (56%)
Frame = +2
Query: 50 LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 229
L + + +I S + + E+ QL+ DRD LR V +TG+AK+ L N+ R+IWNA++
Sbjct: 930 LQEDIVREITSDARLQTEIEAEFEQLRVDRDVLR-SVNQTGDAKVALPCNLARIIWNAQK 988
Query: 230 IFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIA 358
IF V +DL P K+V GV L + ++ D+ + A A
Sbjct: 989 IFHVNTRAPTDLHPIKVVEGVRDLSKKLVIVKGDDPISIQAQA 1031
[165][TOP]
>UniRef100_UPI0001796DD3 PREDICTED: similar to DNA-directed RNA polymerase II subunit RPB1
(RNA polymerase II subunit B1) (DNA-directed RNA
polymerase II subunit A) (DNA-directed RNA polymerase III
largest subunit) n=1 Tax=Equus caballus
RepID=UPI0001796DD3
Length = 1834
Score = 65.1 bits (157), Expect = 2e-09
Identities = 32/95 (33%), Positives = 58/95 (61%)
Frame = +2
Query: 50 LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 229
L + + D+ S + L +E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++
Sbjct: 934 LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 992
Query: 230 IFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
IF + SDL P K+V GV+ L + ++ D+
Sbjct: 993 IFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDD 1027
[166][TOP]
>UniRef100_UPI0000EBDCD2 PREDICTED: polymerase (RNA) II (DNA directed) polypeptide A, 220kDa
isoform 4 n=1 Tax=Bos taurus RepID=UPI0000EBDCD2
Length = 1970
Score = 65.1 bits (157), Expect = 2e-09
Identities = 32/95 (33%), Positives = 58/95 (61%)
Frame = +2
Query: 50 LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 229
L + + D+ S + L +E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++
Sbjct: 934 LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 992
Query: 230 IFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
IF + SDL P K+V GV+ L + ++ D+
Sbjct: 993 IFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDD 1027
[167][TOP]
>UniRef100_UPI0000E24648 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
(RPB1) n=1 Tax=Pan troglodytes RepID=UPI0000E24648
Length = 1913
Score = 65.1 bits (157), Expect = 2e-09
Identities = 32/95 (33%), Positives = 58/95 (61%)
Frame = +2
Query: 50 LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 229
L + + D+ S + L +E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++
Sbjct: 934 LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 992
Query: 230 IFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
IF + SDL P K+V GV+ L + ++ D+
Sbjct: 993 IFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDD 1027
[168][TOP]
>UniRef100_UPI0000D9E16B PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
(RPB1) n=1 Tax=Macaca mulatta RepID=UPI0000D9E16B
Length = 1193
Score = 65.1 bits (157), Expect = 2e-09
Identities = 32/95 (33%), Positives = 58/95 (61%)
Frame = +2
Query: 50 LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 229
L + + D+ S + L +E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++
Sbjct: 934 LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 992
Query: 230 IFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
IF + SDL P K+V GV+ L + ++ D+
Sbjct: 993 IFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDD 1027
[169][TOP]
>UniRef100_UPI00005A0B2C PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
(RPB1) isoform 23 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B2C
Length = 1888
Score = 65.1 bits (157), Expect = 2e-09
Identities = 32/95 (33%), Positives = 58/95 (61%)
Frame = +2
Query: 50 LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 229
L + + D+ S + L +E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++
Sbjct: 934 LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 992
Query: 230 IFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
IF + SDL P K+V GV+ L + ++ D+
Sbjct: 993 IFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDD 1027
[170][TOP]
>UniRef100_UPI00005A0B2B PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
(RPB1) isoform 22 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B2B
Length = 1892
Score = 65.1 bits (157), Expect = 2e-09
Identities = 32/95 (33%), Positives = 58/95 (61%)
Frame = +2
Query: 50 LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 229
L + + D+ S + L +E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++
Sbjct: 936 LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 994
Query: 230 IFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
IF + SDL P K+V GV+ L + ++ D+
Sbjct: 995 IFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDD 1029
[171][TOP]
>UniRef100_UPI00005A0B2A PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
(RPB1) isoform 21 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B2A
Length = 1896
Score = 65.1 bits (157), Expect = 2e-09
Identities = 32/95 (33%), Positives = 58/95 (61%)
Frame = +2
Query: 50 LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 229
L + + D+ S + L +E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++
Sbjct: 936 LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 994
Query: 230 IFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
IF + SDL P K+V GV+ L + ++ D+
Sbjct: 995 IFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDD 1029
[172][TOP]
>UniRef100_UPI00005A0B29 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
(RPB1) isoform 20 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B29
Length = 1891
Score = 65.1 bits (157), Expect = 2e-09
Identities = 32/95 (33%), Positives = 58/95 (61%)
Frame = +2
Query: 50 LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 229
L + + D+ S + L +E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++
Sbjct: 903 LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 961
Query: 230 IFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
IF + SDL P K+V GV+ L + ++ D+
Sbjct: 962 IFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDD 996
[173][TOP]
>UniRef100_UPI00005A0B28 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
(RPB1) isoform 19 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B28
Length = 1908
Score = 65.1 bits (157), Expect = 2e-09
Identities = 32/95 (33%), Positives = 58/95 (61%)
Frame = +2
Query: 50 LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 229
L + + D+ S + L +E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++
Sbjct: 920 LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 978
Query: 230 IFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
IF + SDL P K+V GV+ L + ++ D+
Sbjct: 979 IFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDD 1013
[174][TOP]
>UniRef100_UPI00005A0B27 PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide
A isoform 18 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B27
Length = 1831
Score = 65.1 bits (157), Expect = 2e-09
Identities = 32/95 (33%), Positives = 58/95 (61%)
Frame = +2
Query: 50 LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 229
L + + D+ S + L +E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++
Sbjct: 934 LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 992
Query: 230 IFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
IF + SDL P K+V GV+ L + ++ D+
Sbjct: 993 IFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDD 1027
[175][TOP]
>UniRef100_UPI00005A0B26 PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide
A isoform 17 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B26
Length = 1684
Score = 65.1 bits (157), Expect = 2e-09
Identities = 32/95 (33%), Positives = 58/95 (61%)
Frame = +2
Query: 50 LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 229
L + + D+ S + L +E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++
Sbjct: 924 LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 982
Query: 230 IFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
IF + SDL P K+V GV+ L + ++ D+
Sbjct: 983 IFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDD 1017
[176][TOP]
>UniRef100_UPI00005A0B25 PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide
A isoform 16 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B25
Length = 1752
Score = 65.1 bits (157), Expect = 2e-09
Identities = 32/95 (33%), Positives = 58/95 (61%)
Frame = +2
Query: 50 LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 229
L + + D+ S + L +E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++
Sbjct: 924 LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 982
Query: 230 IFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
IF + SDL P K+V GV+ L + ++ D+
Sbjct: 983 IFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDD 1017
[177][TOP]
>UniRef100_UPI00005A0B24 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
(RPB1) isoform 15 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B24
Length = 1924
Score = 65.1 bits (157), Expect = 2e-09
Identities = 32/95 (33%), Positives = 58/95 (61%)
Frame = +2
Query: 50 LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 229
L + + D+ S + L +E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++
Sbjct: 936 LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 994
Query: 230 IFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
IF + SDL P K+V GV+ L + ++ D+
Sbjct: 995 IFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDD 1029
[178][TOP]
>UniRef100_UPI00005A0B23 PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide
A isoform 14 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B23
Length = 1653
Score = 65.1 bits (157), Expect = 2e-09
Identities = 32/95 (33%), Positives = 58/95 (61%)
Frame = +2
Query: 50 LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 229
L + + D+ S + L +E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++
Sbjct: 907 LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 965
Query: 230 IFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
IF + SDL P K+V GV+ L + ++ D+
Sbjct: 966 IFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDD 1000
[179][TOP]
>UniRef100_UPI00005A0B22 PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide
A isoform 13 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B22
Length = 1722
Score = 65.1 bits (157), Expect = 2e-09
Identities = 32/95 (33%), Positives = 58/95 (61%)
Frame = +2
Query: 50 LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 229
L + + D+ S + L +E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++
Sbjct: 907 LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 965
Query: 230 IFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
IF + SDL P K+V GV+ L + ++ D+
Sbjct: 966 IFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDD 1000
[180][TOP]
>UniRef100_UPI00005A0B21 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
(RPB1) isoform 12 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B21
Length = 1922
Score = 65.1 bits (157), Expect = 2e-09
Identities = 32/95 (33%), Positives = 58/95 (61%)
Frame = +2
Query: 50 LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 229
L + + D+ S + L +E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++
Sbjct: 934 LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 992
Query: 230 IFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
IF + SDL P K+V GV+ L + ++ D+
Sbjct: 993 IFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDD 1027
[181][TOP]
>UniRef100_UPI00005A0B20 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
(RPB1) isoform 11 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B20
Length = 1923
Score = 65.1 bits (157), Expect = 2e-09
Identities = 32/95 (33%), Positives = 58/95 (61%)
Frame = +2
Query: 50 LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 229
L + + D+ S + L +E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++
Sbjct: 935 LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 993
Query: 230 IFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
IF + SDL P K+V GV+ L + ++ D+
Sbjct: 994 IFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDD 1028
[182][TOP]
>UniRef100_UPI00005A0B1F PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide
A isoform 10 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B1F
Length = 1840
Score = 65.1 bits (157), Expect = 2e-09
Identities = 32/95 (33%), Positives = 58/95 (61%)
Frame = +2
Query: 50 LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 229
L + + D+ S + L +E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++
Sbjct: 930 LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 988
Query: 230 IFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
IF + SDL P K+V GV+ L + ++ D+
Sbjct: 989 IFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDD 1023
[183][TOP]
>UniRef100_UPI00005A0B1E PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide
A isoform 9 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B1E
Length = 1851
Score = 65.1 bits (157), Expect = 2e-09
Identities = 32/95 (33%), Positives = 58/95 (61%)
Frame = +2
Query: 50 LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 229
L + + D+ S + L +E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++
Sbjct: 930 LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 988
Query: 230 IFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
IF + SDL P K+V GV+ L + ++ D+
Sbjct: 989 IFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDD 1023
[184][TOP]
>UniRef100_UPI00005A0B1D PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
(RPB1) isoform 1 n=2 Tax=Canis lupus familiaris
RepID=UPI00005A0B1D
Length = 1764
Score = 65.1 bits (157), Expect = 2e-09
Identities = 32/95 (33%), Positives = 58/95 (61%)
Frame = +2
Query: 50 LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 229
L + + D+ S + L +E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++
Sbjct: 952 LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 1010
Query: 230 IFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
IF + SDL P K+V GV+ L + ++ D+
Sbjct: 1011 IFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDD 1045
[185][TOP]
>UniRef100_UPI00005A0B19 PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide
A isoform 5 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B19
Length = 1693
Score = 65.1 bits (157), Expect = 2e-09
Identities = 32/95 (33%), Positives = 58/95 (61%)
Frame = +2
Query: 50 LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 229
L + + D+ S + L +E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++
Sbjct: 920 LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 978
Query: 230 IFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
IF + SDL P K+V GV+ L + ++ D+
Sbjct: 979 IFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDD 1013
[186][TOP]
>UniRef100_UPI00005A0B17 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
(RPB1) isoform 3 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B17
Length = 1788
Score = 65.1 bits (157), Expect = 2e-09
Identities = 32/95 (33%), Positives = 58/95 (61%)
Frame = +2
Query: 50 LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 229
L + + D+ S + L +E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++
Sbjct: 934 LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 992
Query: 230 IFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
IF + SDL P K+V GV+ L + ++ D+
Sbjct: 993 IFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDD 1027
[187][TOP]
>UniRef100_UPI00005A0B16 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
(RPB1) isoform 2 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B16
Length = 1922
Score = 65.1 bits (157), Expect = 2e-09
Identities = 32/95 (33%), Positives = 58/95 (61%)
Frame = +2
Query: 50 LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 229
L + + D+ S + L +E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++
Sbjct: 934 LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 992
Query: 230 IFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
IF + SDL P K+V GV+ L + ++ D+
Sbjct: 993 IFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDD 1027
[188][TOP]
>UniRef100_UPI0001B7A25C UPI0001B7A25C related cluster n=1 Tax=Rattus norvegicus
RepID=UPI0001B7A25C
Length = 1968
Score = 65.1 bits (157), Expect = 2e-09
Identities = 32/95 (33%), Positives = 58/95 (61%)
Frame = +2
Query: 50 LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 229
L + + D+ S + L +E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++
Sbjct: 936 LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 994
Query: 230 IFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
IF + SDL P K+V GV+ L + ++ D+
Sbjct: 995 IFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDD 1029
[189][TOP]
>UniRef100_UPI0001B7A25B UPI0001B7A25B related cluster n=1 Tax=Rattus norvegicus
RepID=UPI0001B7A25B
Length = 1932
Score = 65.1 bits (157), Expect = 2e-09
Identities = 32/95 (33%), Positives = 58/95 (61%)
Frame = +2
Query: 50 LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 229
L + + D+ S + L +E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++
Sbjct: 934 LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 992
Query: 230 IFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
IF + SDL P K+V GV+ L + ++ D+
Sbjct: 993 IFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDD 1027
[190][TOP]
>UniRef100_UPI0000DA33D8 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
(RPB1) n=1 Tax=Rattus norvegicus RepID=UPI0000DA33D8
Length = 1970
Score = 65.1 bits (157), Expect = 2e-09
Identities = 32/95 (33%), Positives = 58/95 (61%)
Frame = +2
Query: 50 LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 229
L + + D+ S + L +E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++
Sbjct: 934 LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 992
Query: 230 IFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
IF + SDL P K+V GV+ L + ++ D+
Sbjct: 993 IFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDD 1027
[191][TOP]
>UniRef100_UPI0001951285 220 kDa DNA-directed RNA polymerase polypeptide A n=1 Tax=Canis lupus
familiaris RepID=UPI0001951285
Length = 1969
Score = 65.1 bits (157), Expect = 2e-09
Identities = 32/95 (33%), Positives = 58/95 (61%)
Frame = +2
Query: 50 LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 229
L + + D+ S + L +E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++
Sbjct: 934 LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 992
Query: 230 IFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
IF + SDL P K+V GV+ L + ++ D+
Sbjct: 993 IFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDD 1027
[192][TOP]
>UniRef100_O08847 DNA-directed RNA polymerase n=1 Tax=Mus musculus RepID=O08847_MOUSE
Length = 1966
Score = 65.1 bits (157), Expect = 2e-09
Identities = 32/95 (33%), Positives = 58/95 (61%)
Frame = +2
Query: 50 LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 229
L + + D+ S + L +E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++
Sbjct: 934 LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 992
Query: 230 IFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
IF + SDL P K+V GV+ L + ++ D+
Sbjct: 993 IFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDD 1027
[193][TOP]
>UniRef100_Q30BD9 DNA-directed RNA polymerase n=1 Tax=Glaucocystis nostochinearum
RepID=Q30BD9_9EUKA
Length = 1852
Score = 65.1 bits (157), Expect = 2e-09
Identities = 38/104 (36%), Positives = 55/104 (52%)
Frame = +2
Query: 47 YLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAK 226
++ + I D LL E+ QL DR LR + T E PL VN++RLIWNA+
Sbjct: 920 FMDADIVQKIRDSADDRILLEAEFKQLMNDRTALRESI-PTDENTWPLPVNLKRLIWNAQ 978
Query: 227 RIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIA 358
+IF + SDL P I++GV LL + V+ ++ V+A A
Sbjct: 979 KIFHIDVRKPSDLDPVDIIKGVNLLTKQLVVIPGEDPLSVEAQA 1022
[194][TOP]
>UniRef100_Q9NJJ7 DNA-directed RNA polymerase (Fragment) n=1 Tax=Scolopendra
polymorpha RepID=Q9NJJ7_SCOPO
Length = 734
Score = 65.1 bits (157), Expect = 2e-09
Identities = 29/90 (32%), Positives = 56/90 (62%)
Frame = +2
Query: 65 LNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVR 244
+ ++ ++ L KEW LK+DR+ LR +VF G++K+ L N+ R+IWNA++IF +
Sbjct: 590 VKELMGSANIVGELEKEWETLKRDRETLR-QVFPKGDSKVVLPCNLPRMIWNAQKIFHIN 648
Query: 245 QNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
+DL+P +++ GV L+ + ++ ++
Sbjct: 649 TRVPTDLNPFRVIEGVRELVKKIVIVQGED 678
[195][TOP]
>UniRef100_Q7Q3C6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Anopheles gambiae
RepID=Q7Q3C6_ANOGA
Length = 1878
Score = 65.1 bits (157), Expect = 2e-09
Identities = 29/94 (30%), Positives = 58/94 (61%)
Frame = +2
Query: 53 SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRI 232
++ + ++ V + + E+ QL +DR+ LR ++F G++K+ L N++R+IWN ++I
Sbjct: 925 NEDVIKELTETSSVIQEIEAEYEQLLRDREALR-QIFPNGDSKVVLPCNLQRMIWNVQKI 983
Query: 233 FDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
F + + +DLSP K+++GV LL R ++ +
Sbjct: 984 FHINKRSPTDLSPLKVIQGVRDLLQRCVIVAGTD 1017
[196][TOP]
>UniRef100_A9QMR5 DNA-directed RNA polymerase (Fragment) n=1 Tax=Rhabditoides
inermiformis RepID=A9QMR5_9BILA
Length = 524
Score = 65.1 bits (157), Expect = 2e-09
Identities = 33/104 (31%), Positives = 62/104 (59%)
Frame = +2
Query: 26 QESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIE 205
+++ N Y + + D+ + + + EW QL++DR LR ++F G++K+ L N++
Sbjct: 126 EKALNKVYTADV-VRDLQESPEALKEVEAEWLQLEEDRRLLR-KIFPKGDSKVVLPCNLQ 183
Query: 206 RLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDED 337
RLIWNA++IF V ++S L+P +++ GV + + V+ ED
Sbjct: 184 RLIWNAQKIFHVETREKSSLNPLRVIAGVREMSQKL-VIVGGED 226
[197][TOP]
>UniRef100_A9QMH0 DNA-directed RNA polymerase (Fragment) n=1 Tax=Panagrellus
redivivus RepID=A9QMH0_PANRE
Length = 636
Score = 65.1 bits (157), Expect = 2e-09
Identities = 39/114 (34%), Positives = 62/114 (54%), Gaps = 3/114 (2%)
Frame = +2
Query: 2 LTEPDLHLQ---ESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTG 172
L E HL + S S + ++ + +V E L +EW +L +DR LR E+F G
Sbjct: 125 LFEKKYHLNIHDDKEMSRLYSVDVIRELRNDPEVQEKLEQEWRKLCEDRAMLR-EIFPKG 183
Query: 173 EAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
+AK L N++RLIWNA++IF V ++L P+ I+ GV L R +++ +
Sbjct: 184 DAKTVLPCNLQRLIWNAQKIFHVDLRKPTELHPATIIEGVRKLGDRLVIVSGTD 237
[198][TOP]
>UniRef100_A9QMF4 RNA polymerase 2 (Fragment) n=1 Tax=Rhabditoides inermiformis
RepID=A9QMF4_9BILA
Length = 597
Score = 65.1 bits (157), Expect = 2e-09
Identities = 33/104 (31%), Positives = 62/104 (59%)
Frame = +2
Query: 26 QESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIE 205
+++ N Y + + D+ + + + EW QL++DR LR ++F G++K+ L N++
Sbjct: 94 EKALNKVYTADV-VRDLQESPEALKEVEAEWLQLEEDRRLLR-KIFPKGDSKVVLPCNLQ 151
Query: 206 RLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDED 337
RLIWNA++IF V ++S L+P +++ GV + + V+ ED
Sbjct: 152 RLIWNAQKIFHVETREKSSLNPLRVIAGVREMSQKL-VIVGGED 194
[199][TOP]
>UniRef100_A9QMF3 DNA-directed RNA polymerase (Fragment) n=1 Tax=Rhabditoides regina
RepID=A9QMF3_9BILA
Length = 626
Score = 65.1 bits (157), Expect = 2e-09
Identities = 30/94 (31%), Positives = 57/94 (60%)
Frame = +2
Query: 53 SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRI 232
S+ + D+ D + + EW QL++DR LR ++F G++K+ L N++RLIWNA++I
Sbjct: 140 SEEVVRDLQGSTDALKEVEDEWLQLEEDRRLLR-KIFPKGDSKVVLPCNLQRLIWNAQKI 198
Query: 233 FDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
F V + L+P +++ GV + + +++ D+
Sbjct: 199 FKVETRKVTALNPLRVIEGVRNVSKKLVIVSGDD 232
[200][TOP]
>UniRef100_A9QMF2 DNA-directed RNA polymerase (Fragment) n=1 Tax=Pelodera teres
RepID=A9QMF2_9PELO
Length = 629
Score = 65.1 bits (157), Expect = 2e-09
Identities = 36/107 (33%), Positives = 62/107 (57%)
Frame = +2
Query: 14 DLHLQESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLA 193
DL + S Y S+ + D+ + + +EW QL++DR LR ++F GE+K+ L
Sbjct: 128 DLSDERSLRRVY-SEDVVRDLLGSSSALKEVEEEWQQLEEDRRLLR-KIFPKGESKVVLP 185
Query: 194 VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
N++RLIWNA++IF V + L+P ++V+GV L + ++ D+
Sbjct: 186 CNLQRLIWNAQKIFKVETRKVTALNPLRVVQGVRDLSKKLIIVMGDD 232
[201][TOP]
>UniRef100_A6NN93 DNA-directed RNA polymerase n=1 Tax=Homo sapiens RepID=A6NN93_HUMAN
Length = 1970
Score = 65.1 bits (157), Expect = 2e-09
Identities = 32/95 (33%), Positives = 58/95 (61%)
Frame = +2
Query: 50 LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 229
L + + D+ S + L +E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++
Sbjct: 934 LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 992
Query: 230 IFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
IF + SDL P K+V GV+ L + ++ D+
Sbjct: 993 IFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDD 1027
[202][TOP]
>UniRef100_Q1E2G9 DNA-directed RNA polymerase n=1 Tax=Coccidioides immitis
RepID=Q1E2G9_COCIM
Length = 1750
Score = 65.1 bits (157), Expect = 2e-09
Identities = 41/107 (38%), Positives = 62/107 (57%)
Frame = +2
Query: 14 DLHLQESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLA 193
DL E+S SP L + A +I +V L +EW QL+KDR FLR V K E + L
Sbjct: 923 DLMDPENSLSPELLEQA-TEITGDMEVQRYLDEEWEQLQKDRAFLR-SVAKEDEEMMQLP 980
Query: 194 VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
+N++R++ +AK F +R+ SDL P+ ++ V+ LL R V+ D+
Sbjct: 981 INVQRILESAKTTFRIREGTISDLHPADVIPQVQGLLDRLVVVRGDD 1027
[203][TOP]
>UniRef100_C5PAJ4 DNA-directed RNA polymerase n=1 Tax=Coccidioides posadasii C735 delta
SOWgp RepID=C5PAJ4_COCP7
Length = 1746
Score = 65.1 bits (157), Expect = 2e-09
Identities = 41/107 (38%), Positives = 62/107 (57%)
Frame = +2
Query: 14 DLHLQESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLA 193
DL E+S SP L + A +I +V L +EW QL+KDR FLR V K E + L
Sbjct: 923 DLMDPENSLSPELLEQA-TEITGDMEVQRYLDEEWEQLQKDRAFLR-SVAKEDEEMMQLP 980
Query: 194 VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
+N++R++ +AK F +R+ SDL P+ ++ V+ LL R V+ D+
Sbjct: 981 INVQRILESAKTTFRIREGTISDLHPADVIPQVQGLLDRLVVVRGDD 1027
[204][TOP]
>UniRef100_C3U0C3 DNA-directed RNA polymerase (Fragment) n=1 Tax=Xeromyces bisporus
RepID=C3U0C3_9EURO
Length = 618
Score = 65.1 bits (157), Expect = 2e-09
Identities = 34/95 (35%), Positives = 57/95 (60%)
Frame = +2
Query: 68 NDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQ 247
N+I +V + L +EW QL KDR+FLR V K E + L +N++R++ +AK F +R+
Sbjct: 464 NEIKGDMEVQKYLDEEWEQLVKDREFLR-SVAKEDEEMMQLPINVQRILESAKTTFRIRE 522
Query: 248 NDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352
SDL P++++ V LL R ++ ++D +A
Sbjct: 523 GTISDLHPAEVIPQVRALLDRLVIVRGNDDISREA 557
[205][TOP]
>UniRef100_A1YIB1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Phragmidium sp. MB
RepID=A1YIB1_9BASI
Length = 1013
Score = 65.1 bits (157), Expect = 2e-09
Identities = 38/93 (40%), Positives = 52/93 (55%)
Frame = +2
Query: 56 QAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIF 235
Q L+D S + +L KEW QL KDR LR +F G + PL VNI R+I NA++IF
Sbjct: 850 QVGLDD--SSAALQSVLDKEWEQLIKDRKMLREFIFTDGNGRKPLPVNIRRIIQNAQQIF 907
Query: 236 DVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
+ SDL P I++ V L +R V+ D+
Sbjct: 908 HIDFRKPSDLPPPDIIQMVNDLCNRLIVVRGDD 940
[206][TOP]
>UniRef100_P08775 DNA-directed RNA polymerase II subunit RPB1 n=1 Tax=Mus musculus
RepID=RPB1_MOUSE
Length = 1970
Score = 65.1 bits (157), Expect = 2e-09
Identities = 32/95 (33%), Positives = 58/95 (61%)
Frame = +2
Query: 50 LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 229
L + + D+ S + L +E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++
Sbjct: 934 LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 992
Query: 230 IFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
IF + SDL P K+V GV+ L + ++ D+
Sbjct: 993 IFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDD 1027
[207][TOP]
>UniRef100_P24928 DNA-directed RNA polymerase II subunit RPB1 n=2 Tax=Euarchontoglires
RepID=RPB1_HUMAN
Length = 1970
Score = 65.1 bits (157), Expect = 2e-09
Identities = 32/95 (33%), Positives = 58/95 (61%)
Frame = +2
Query: 50 LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 229
L + + D+ S + L +E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++
Sbjct: 934 LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 992
Query: 230 IFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
IF + SDL P K+V GV+ L + ++ D+
Sbjct: 993 IFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDD 1027
[208][TOP]
>UniRef100_Q4SF83 DNA-directed RNA polymerase (Fragment) n=1 Tax=Tetraodon nigroviridis
RepID=Q4SF83_TETNG
Length = 1745
Score = 64.7 bits (156), Expect = 3e-09
Identities = 29/81 (35%), Positives = 52/81 (64%)
Frame = +2
Query: 50 LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 229
L + + D+ + V L +E+ ++K+DR+ LR +F TG++K+ L N+ R+IWNA++
Sbjct: 808 LQEDVVKDVMTNAHVQSSLEREFEKMKEDREILR-AIFPTGDSKVVLPCNLARMIWNAQK 866
Query: 230 IFDVRQNDRSDLSPSKIVRGV 292
IF + +DLSP ++V G+
Sbjct: 867 IFRINTRTPTDLSPLRVVEGI 887
[209][TOP]
>UniRef100_Q1ACS9 RNA polymerase II largest subunit (Fragment) n=1 Tax=Ruschia herrei
RepID=Q1ACS9_9CARY
Length = 240
Score = 64.7 bits (156), Expect = 3e-09
Identities = 33/108 (30%), Positives = 61/108 (56%)
Frame = +2
Query: 29 ESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIER 208
E+ Y+ + ++D+ + + + E +L+ DR L E+ TG+ PL VN++R
Sbjct: 74 ENWEPDYMLKEHVDDLKTIREFRNVFDAEVQKLEADRFQLGTEIATTGDNSWPLPVNLKR 133
Query: 209 LIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352
L+WNA++ F V ++SD+ P +IV V+ L R +V+ D+ ++A
Sbjct: 134 LLWNAQKTFKVDMREKSDMHPMEIVEAVDKLQERLKVVPGDDFLSIEA 181
[210][TOP]
>UniRef100_Q9BNN0 RNA polymerase II largest subunit (Fragment) n=1 Tax=Geophilus
vittatus RepID=Q9BNN0_9MYRI
Length = 222
Score = 64.7 bits (156), Expect = 3e-09
Identities = 30/90 (33%), Positives = 54/90 (60%)
Frame = +2
Query: 65 LNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVR 244
+ +++ + L KEW LKKDR+ LR VF G++K+ L N+ R+IWNA++IF +
Sbjct: 78 VKELNGSAHIVSQLDKEWEFLKKDRETLR-SVFPKGDSKVVLPCNLPRMIWNAQKIFHIN 136
Query: 245 QNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
+DL+P +++ GV L + ++ ++
Sbjct: 137 TRTPTDLNPLRVLEGVRELSSKLIIVPGED 166
[211][TOP]
>UniRef100_Q9NJK2 DNA-directed RNA polymerase (Fragment) n=1 Tax=Polyxenus
fasciculatus RepID=Q9NJK2_9MYRI
Length = 751
Score = 64.3 bits (155), Expect = 4e-09
Identities = 33/96 (34%), Positives = 55/96 (57%)
Frame = +2
Query: 53 SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRI 232
++ + D+ L +EW LK DR+ LR +F G++K+ L N++R+IWNA++I
Sbjct: 586 NEEIVKDLFGSASAVGELEREWXTLKLDREVLR-TIFPKGDSKVVLPCNLQRMIWNAQKI 644
Query: 233 FDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDA 340
F + +DLSP +++ GV L + V+ EDA
Sbjct: 645 FHINVRTPTDLSPLRVIEGVRDLTKKL-VIVVGEDA 679
[212][TOP]
>UniRef100_Q9BNN8 RNA polymerase II largest subunit (Fragment) n=1 Tax=Craterostigmus
tasmanianus RepID=Q9BNN8_9MYRI
Length = 222
Score = 64.3 bits (155), Expect = 4e-09
Identities = 31/90 (34%), Positives = 54/90 (60%)
Frame = +2
Query: 65 LNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVR 244
+ D+ +V L EW L KDR+ LR VF G++K+ L N++R+IWNA++IF +
Sbjct: 78 VKDLLGSANVVGDLELEWESLCKDREVLR-TVFPKGDSKVVLPCNLQRMIWNAQKIFHIN 136
Query: 245 QNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
+DL+PS+++ GV L + ++ ++
Sbjct: 137 IRSPTDLNPSRVIEGVRELSKKIIIVVGED 166
[213][TOP]
>UniRef100_P91819 DNA-directed RNA polymerase (Fragment) n=1 Tax=Zeldia punctata
RepID=P91819_ZELPU
Length = 629
Score = 64.3 bits (155), Expect = 4e-09
Identities = 35/93 (37%), Positives = 55/93 (59%)
Frame = +2
Query: 59 AALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFD 238
+ + ++ D + EW QL++DR LR ++F G+AK+ L N++RLIWNA +IF
Sbjct: 139 SVVRELLGSADALREVESEWQQLEEDRRLLR-KIFPKGDAKVHLPCNLKRLIWNAHKIFH 197
Query: 239 VRQNDRSDLSPSKIVRGVELLLHRTRVLTSDED 337
V DL+P ++V GV L++ V+ S ED
Sbjct: 198 VDLKKPVDLNPLRVVEGVR-ELNKKLVIVSGED 229
[214][TOP]
>UniRef100_A9QMR7 DNA-directed RNA polymerase (Fragment) n=1 Tax=Bunonema reticulatum
RepID=A9QMR7_9BILA
Length = 614
Score = 64.3 bits (155), Expect = 4e-09
Identities = 36/76 (47%), Positives = 48/76 (63%)
Frame = +2
Query: 110 KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 289
+EW QL KDR LR E+F G+AK+ L N++RLIWNA++IF V LSP +++ G
Sbjct: 149 EEWKQLVKDRRTLR-EIFPKGDAKVVLPCNVQRLIWNAQKIFHVEIRRPVSLSPLRVIEG 207
Query: 290 VELLLHRTRVLTSDED 337
V L R V+ S ED
Sbjct: 208 VRELTARL-VIVSGED 222
[215][TOP]
>UniRef100_A9QMQ0 RNA polymerase 2 (Fragment) n=1 Tax=Pristionchus pacificus
RepID=A9QMQ0_PRIPA
Length = 181
Score = 64.3 bits (155), Expect = 4e-09
Identities = 29/60 (48%), Positives = 43/60 (71%)
Frame = +2
Query: 113 EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 292
EW QL++DR+ LR +F G+AK+ L N++RLIWNA++IF V +DLSP +++ GV
Sbjct: 57 EWQQLQEDRELLRM-IFPKGDAKIVLPCNLQRLIWNAQKIFHVEMRKPTDLSPVRVIEGV 115
[216][TOP]
>UniRef100_A9QMF6 RNA polymerase 2 (Fragment) n=1 Tax=Pristionchus pacificus
RepID=A9QMF6_PRIPA
Length = 583
Score = 64.3 bits (155), Expect = 4e-09
Identities = 29/60 (48%), Positives = 43/60 (71%)
Frame = +2
Query: 113 EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 292
EW QL++DR+ LR +F G+AK+ L N++RLIWNA++IF V +DLSP +++ GV
Sbjct: 127 EWQQLQEDRELLRM-IFPKGDAKIVLPCNLQRLIWNAQKIFHVEMRKPTDLSPVRVIEGV 185
[217][TOP]
>UniRef100_UPI0000E48673 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
(RPB1) isoform 1 n=1 Tax=Strongylocentrotus purpuratus
RepID=UPI0000E48673
Length = 1880
Score = 63.9 bits (154), Expect = 5e-09
Identities = 36/96 (37%), Positives = 59/96 (61%)
Frame = +2
Query: 53 SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRI 232
++ + D+ + V L KE+ QLK+DR+ LR ++F GE+K+ L N++R+IWNA++I
Sbjct: 929 NEKIVKDVVANAHVHLELEKEYDQLKEDREVLR-KIFPKGESKVALPCNLDRMIWNAQQI 987
Query: 233 FDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDA 340
F + S+L PS ++ GV L + V+ EDA
Sbjct: 988 FHINTRLPSELHPSFVLEGVR-DLKKKLVIVKGEDA 1022
[218][TOP]
>UniRef100_UPI0000E48672 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
(RPB1) isoform 2 n=1 Tax=Strongylocentrotus purpuratus
RepID=UPI0000E48672
Length = 1913
Score = 63.9 bits (154), Expect = 5e-09
Identities = 36/96 (37%), Positives = 59/96 (61%)
Frame = +2
Query: 53 SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRI 232
++ + D+ + V L KE+ QLK+DR+ LR ++F GE+K+ L N++R+IWNA++I
Sbjct: 935 NEKIVKDVVANAHVHLELEKEYDQLKEDREVLR-KIFPKGESKVALPCNLDRMIWNAQQI 993
Query: 233 FDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDA 340
F + S+L PS ++ GV L + V+ EDA
Sbjct: 994 FHINTRLPSELHPSFVLEGVR-DLKKKLVIVKGEDA 1028
[219][TOP]
>UniRef100_UPI0000E48671 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
(RPB1) isoform 3 n=1 Tax=Strongylocentrotus purpuratus
RepID=UPI0000E48671
Length = 1921
Score = 63.9 bits (154), Expect = 5e-09
Identities = 36/96 (37%), Positives = 59/96 (61%)
Frame = +2
Query: 53 SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRI 232
++ + D+ + V L KE+ QLK+DR+ LR ++F GE+K+ L N++R+IWNA++I
Sbjct: 935 NEKIVKDVVANAHVHLELEKEYDQLKEDREVLR-KIFPKGESKVALPCNLDRMIWNAQQI 993
Query: 233 FDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDA 340
F + S+L PS ++ GV L + V+ EDA
Sbjct: 994 FHINTRLPSELHPSFVLEGVR-DLKKKLVIVKGEDA 1028
[220][TOP]
>UniRef100_UPI00005A0B1C PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide
A isoform 8 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B1C
Length = 1719
Score = 63.9 bits (154), Expect = 5e-09
Identities = 31/90 (34%), Positives = 56/90 (62%)
Frame = +2
Query: 65 LNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVR 244
+ D+ S + L +E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++IF +
Sbjct: 933 VKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQKIFHIN 991
Query: 245 QNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
SDL P K+V GV+ L + ++ D+
Sbjct: 992 PRLPSDLHPIKVVEGVKELSKKLVIVNGDD 1021
[221][TOP]
>UniRef100_UPI00005A0B1B PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide
A isoform 7 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B1B
Length = 1858
Score = 63.9 bits (154), Expect = 5e-09
Identities = 31/90 (34%), Positives = 56/90 (62%)
Frame = +2
Query: 65 LNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVR 244
+ D+ S + L +E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++IF +
Sbjct: 933 VKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQKIFHIN 991
Query: 245 QNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
SDL P K+V GV+ L + ++ D+
Sbjct: 992 PRLPSDLHPIKVVEGVKELSKKLVIVNGDD 1021
[222][TOP]
>UniRef100_B7SNX4 DNA-directed RNA polymerase (Fragment) n=1 Tax=Pisum sativum
RepID=B7SNX4_PEA
Length = 1010
Score = 63.9 bits (154), Expect = 5e-09
Identities = 34/102 (33%), Positives = 56/102 (54%)
Frame = +2
Query: 29 ESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIER 208
E+ Y+ + + D+ + + + E +L DR L E+ TG++ LPL VN++R
Sbjct: 841 ENWKPTYMLEEPVEDLKTIREFRNVFEAEVQKLDADRFQLATEIATTGDSSLPLPVNLKR 900
Query: 209 LIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
LIWNA++ F V SD+ P +IV ++ L R RV+ D+
Sbjct: 901 LIWNAQKTFKVDFRRPSDMHPMEIVEAIDKLQERLRVVPGDD 942
[223][TOP]
>UniRef100_A9QMR2 DNA-directed RNA polymerase (Fragment) n=1 Tax=Rhabditis blumi
RepID=A9QMR2_9BILA
Length = 284
Score = 63.9 bits (154), Expect = 5e-09
Identities = 33/92 (35%), Positives = 57/92 (61%), Gaps = 1/92 (1%)
Frame = +2
Query: 80 SGGDVTELLAKEWAQLKKDRDFLRHEVFKTGE-AKLPLAVNIERLIWNAKRIFDVRQNDR 256
S D + + +EWAQL++DR LR ++F TG+ K+ L N++RLIWNA++IF V
Sbjct: 154 STSDALKKVEEEWAQLQEDRRLLR-KIFPTGDDRKVVLPCNLKRLIWNAQKIFHVETRKP 212
Query: 257 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352
+ LSP +++ G++ L + +++ D+ A
Sbjct: 213 TSLSPLRVIDGIKELSKKLIIVSGDDSISKQA 244
[224][TOP]
>UniRef100_A9QMG0 DNA-directed RNA polymerase (Fragment) n=1 Tax=Oscheius tipulae
RepID=A9QMG0_OSCTI
Length = 629
Score = 63.9 bits (154), Expect = 5e-09
Identities = 31/94 (32%), Positives = 57/94 (60%)
Frame = +2
Query: 53 SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRI 232
S+ ++ + + E + EWAQL++DR LR + F G+ K+ L N++RLIWNA++I
Sbjct: 144 SEDLYRELQNEPEAIEEIENEWAQLEEDRRLLR-KTFPNGDNKVVLPCNLQRLIWNAQKI 202
Query: 233 FDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
F V + + L+P ++RGV+ L + ++ ++
Sbjct: 203 FHVETREVTSLNPLAVIRGVKNLSDKLIIVGGED 236
[225][TOP]
>UniRef100_Q2PYR1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Spiromyces aspiralis
RepID=Q2PYR1_9FUNG
Length = 1022
Score = 63.9 bits (154), Expect = 5e-09
Identities = 37/109 (33%), Positives = 60/109 (55%)
Frame = +2
Query: 26 QESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIE 205
++S S L + L ++ +V +L E+ QLK+DR LR + + GEA+ P+ VN+
Sbjct: 852 EKSFPSGTLEFSVLKNVEGNDEVQRVLDDEYEQLKEDRHILRKFIARDGEARRPMPVNLP 911
Query: 206 RLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352
RLI NA++IF + S+LSP +IV + L VL ++ +A
Sbjct: 912 RLIKNAQQIFHIDHRKPSNLSPVEIVEKIRKLADSLIVLRGNDSLTREA 960
[226][TOP]
>UniRef100_C4JY44 DNA-directed RNA polymerase n=1 Tax=Uncinocarpus reesii 1704
RepID=C4JY44_UNCRE
Length = 1747
Score = 63.9 bits (154), Expect = 5e-09
Identities = 39/107 (36%), Positives = 61/107 (57%)
Frame = +2
Query: 14 DLHLQESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLA 193
DL E S SP + + A +I +V L +EW QL+KDR FLR K E + L
Sbjct: 875 DLMDPEKSLSPEILEQA-TEITGDIEVQRYLDEEWEQLQKDRVFLRSAA-KEDEEMMQLP 932
Query: 194 VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
+N++R++ +AK F +R+ SDL P++++ V+ LL R V+ D+
Sbjct: 933 INVQRILESAKTTFRIREGTISDLHPAEVIPQVQALLERLVVVRGDD 979
[227][TOP]
>UniRef100_UPI00005A0B1A PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
(RPB1) isoform 6 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B1A
Length = 1767
Score = 63.5 bits (153), Expect = 7e-09
Identities = 32/97 (32%), Positives = 60/97 (61%), Gaps = 2/97 (2%)
Frame = +2
Query: 50 LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV--NIERLIWNA 223
L + + D+ S + L +E+ ++++DR+ LR +F TG++K+P+ + N+ R+IWNA
Sbjct: 920 LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVPVVLPCNLLRMIWNA 978
Query: 224 KRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
++IF + SDL P K+V GV+ L + ++ D+
Sbjct: 979 QKIFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDD 1015
[228][TOP]
>UniRef100_Q1ACT2 RNA polymerase II largest subunit (Fragment) n=1 Tax=Nepenthes
ampullaria RepID=Q1ACT2_9CARY
Length = 240
Score = 63.5 bits (153), Expect = 7e-09
Identities = 35/108 (32%), Positives = 57/108 (52%)
Frame = +2
Query: 29 ESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIER 208
E N Y+ + D+ + + + E +L+ DR L E+ TG+ PL VN+ R
Sbjct: 74 EDWNPNYMLPDHVEDLKTIREFRNVFDAEVQKLEADRFQLATEIATTGDNSWPLPVNLTR 133
Query: 209 LIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352
LIWNA++ F + RSD+ P +IV V+ L R +V+ D+ ++A
Sbjct: 134 LIWNAQKTFKIDLRRRSDMHPMEIVEAVDKLQERLKVVPGDDFLSIEA 181
[229][TOP]
>UniRef100_O02471 DNA-directed RNA polymerase (Fragment) n=1 Tax=Scutigera
coleoptrata RepID=O02471_SCUCO
Length = 582
Score = 63.5 bits (153), Expect = 7e-09
Identities = 27/94 (28%), Positives = 55/94 (58%)
Frame = +2
Query: 53 SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRI 232
++ + ++ + L +EW L+KDR+ LR VF G++K+ L N++R+IWNA++I
Sbjct: 434 NEDVVKELMGSAHIVNELEREWTMLQKDREALR-SVFPKGDSKIVLPCNLQRMIWNAQKI 492
Query: 233 FDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
F + +DL+P +++ G L + ++ ++
Sbjct: 493 FHINLRSPTDLNPLRVIEGTRELSKKIIIVQGED 526
[230][TOP]
>UniRef100_Q0PQ08 DNA-directed RNA polymerase (Fragment) n=1 Tax=Echinoplaca
strigulacea RepID=Q0PQ08_9LECA
Length = 1017
Score = 63.5 bits (153), Expect = 7e-09
Identities = 36/95 (37%), Positives = 57/95 (60%)
Frame = +2
Query: 68 NDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQ 247
N ++ DV +L E+ +L++ R +LR + E +LP+ VNI R+I AKRIF +R
Sbjct: 855 NIFNADSDVQDLFDAEFQKLEEARLYLRKT--RGSEDRLPIPVNITRIIETAKRIFKIRP 912
Query: 248 NDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352
+RSDL P++++ V LL R V+ D+ V+A
Sbjct: 913 GNRSDLQPAEVIPAVIALLDRLIVVQGDDPISVEA 947
[231][TOP]
>UniRef100_C5GKA7 DNA-directed RNA polymerase n=2 Tax=Ajellomyces dermatitidis
RepID=C5GKA7_AJEDR
Length = 1746
Score = 63.5 bits (153), Expect = 7e-09
Identities = 42/117 (35%), Positives = 66/117 (56%)
Frame = +2
Query: 14 DLHLQESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLA 193
DL E + SP + + A +I +V + L +EW QL KDR F+R V K E + L
Sbjct: 923 DLMDPERTLSPNVLEQA-TEIAGDIEVQKYLDEEWEQLLKDRAFMR-SVAKEDEEMMQLP 980
Query: 194 VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIARE 364
+N++R++ +AK IF +R+ SDL P++++ + LL R V+ D D I+RE
Sbjct: 981 INVQRILESAKTIFRIREGAISDLHPAEVIPQIRALLDRLIVVRGD-----DVISRE 1032
[232][TOP]
>UniRef100_UPI0000F2BF13 PREDICTED: similar to RNA polymerase II isoform 2 n=1 Tax=Monodelphis
domestica RepID=UPI0000F2BF13
Length = 1932
Score = 63.2 bits (152), Expect = 9e-09
Identities = 31/95 (32%), Positives = 58/95 (61%)
Frame = +2
Query: 50 LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 229
L + + D+ S + L +E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++
Sbjct: 934 LQEELVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 992
Query: 230 IFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
IF + SDL P K+V GV+ L + ++ ++
Sbjct: 993 IFHINPRLPSDLHPIKVVDGVKELSKKLVIVNGED 1027
[233][TOP]
>UniRef100_UPI0000F2BF12 PREDICTED: similar to RNA polymerase II isoform 1 n=1 Tax=Monodelphis
domestica RepID=UPI0000F2BF12
Length = 1970
Score = 63.2 bits (152), Expect = 9e-09
Identities = 31/95 (32%), Positives = 58/95 (61%)
Frame = +2
Query: 50 LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 229
L + + D+ S + L +E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++
Sbjct: 934 LQEELVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 992
Query: 230 IFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
IF + SDL P K+V GV+ L + ++ ++
Sbjct: 993 IFHINPRLPSDLHPIKVVDGVKELSKKLVIVNGED 1027
[234][TOP]
>UniRef100_Q71ET4 DNA-directed RNA polymerase (Fragment) n=1 Tax=Amborella trichopoda
RepID=Q71ET4_AMBTC
Length = 1013
Score = 63.2 bits (152), Expect = 9e-09
Identities = 34/109 (31%), Positives = 60/109 (55%)
Frame = +2
Query: 26 QESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIE 205
QE+ + Y+ + D+ + + + E +L+ DR L E+ TG+ P+ VN++
Sbjct: 843 QENWSPSYMLPEHVEDLKTIREFQNVFDAEVQKLEADRHQLGTEITTTGDNSWPMPVNLK 902
Query: 206 RLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352
RLIWNA+++F V SD+ P +IV V+ L R +V+ D+ ++A
Sbjct: 903 RLIWNAQKMFKVDLRRPSDMHPMEIVEAVDKLQERLKVVPGDDLMSIEA 951
[235][TOP]
>UniRef100_Q1ACT8 RNA polymerase II largest subunit (Fragment) n=1 Tax=Kalanchoe
tomentosa RepID=Q1ACT8_9MAGN
Length = 240
Score = 63.2 bits (152), Expect = 9e-09
Identities = 32/105 (30%), Positives = 57/105 (54%)
Frame = +2
Query: 38 NSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIW 217
N Y+ + D+ + + + E +L+ DR L E+ TG+ LP+ VN++RLIW
Sbjct: 77 NPSYMLPEHVEDLKTIREFRNVFDAEVQKLEADRYQLGTEIATTGDNSLPMPVNLKRLIW 136
Query: 218 NAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352
NA++ F V SD+ P +IV ++ L R +V+ ++ ++A
Sbjct: 137 NAQKTFKVDSRRPSDMHPMEIVEAIDKLQERLKVVPGEDSLSIEA 181
[236][TOP]
>UniRef100_B7SNX1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Nicotiana tabacum
RepID=B7SNX1_TOBAC
Length = 1010
Score = 63.2 bits (152), Expect = 9e-09
Identities = 34/105 (32%), Positives = 58/105 (55%)
Frame = +2
Query: 38 NSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIW 217
N Y+ A+ D+ + ++ + E +L+ DR L E+ TG+ PL VNI+RL+
Sbjct: 844 NPSYMLPEAIEDLKTIREIRSVFDAEVQKLQADRKQLGTEIAVTGDNSWPLPVNIQRLVL 903
Query: 218 NAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352
NA++ F + RSD+ P +IV V+ L R +V+ D+ ++A
Sbjct: 904 NAQKTFKIDFRRRSDMHPMEIVEAVDKLQERLKVVPGDDYLSMEA 948
[237][TOP]
>UniRef100_A9QMF1 RNA polymerase 2 (Fragment) n=1 Tax=Pelodera punctata
RepID=A9QMF1_9PELO
Length = 605
Score = 63.2 bits (152), Expect = 9e-09
Identities = 31/94 (32%), Positives = 55/94 (58%)
Frame = +2
Query: 53 SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRI 232
++ + D+ + + + EW QL++DR LR ++F G+ K+ L N++RLIWNA++I
Sbjct: 121 TEDVVRDLLGSSNALQEVEAEWQQLEEDRRLLR-KIFPKGDHKVVLPCNLQRLIWNAQKI 179
Query: 233 FDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
F V S L+P K+V GV L + ++ ++
Sbjct: 180 FKVETRKASSLNPLKVVSGVRELSKKLIIVCGED 213
[238][TOP]
>UniRef100_C3U0B2 DNA-directed RNA polymerase (Fragment) n=1 Tax=Arachnomyces glareosus
RepID=C3U0B2_9EURO
Length = 993
Score = 63.2 bits (152), Expect = 9e-09
Identities = 39/113 (34%), Positives = 64/113 (56%)
Frame = +2
Query: 14 DLHLQESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLA 193
DL E S P + + A +I +V + L +EW QL+KDR FLR V E + L
Sbjct: 822 DLMDPERSLGPEVLEQA-TEIAGDVEVQKYLDEEWEQLQKDRTFLR-SVANQDEEMMQLP 879
Query: 194 VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352
+N++R++ +AK F +R + SDL PS+++ V+ LL R V+ +++ +A
Sbjct: 880 INVQRILESAKTTFRIRDGNISDLHPSEVIPQVQALLDRLVVVRGNDEISREA 932
[239][TOP]
>UniRef100_C0NEY2 DNA-directed RNA polymerase n=1 Tax=Ajellomyces capsulatus G186AR
RepID=C0NEY2_AJECG
Length = 1234
Score = 63.2 bits (152), Expect = 9e-09
Identities = 42/117 (35%), Positives = 66/117 (56%)
Frame = +2
Query: 14 DLHLQESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLA 193
DL + + SP + + A +I +V + L +EW QL KDR F+R V K E + L
Sbjct: 410 DLMDPDRTLSPNVLEQA-TEIAGDIEVQKYLDEEWEQLLKDRAFMR-SVAKEDEEMMQLP 467
Query: 194 VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIARE 364
+N++R++ +AK IF +R+ SDL P++++ V LL R V+ D D I+RE
Sbjct: 468 INVQRILESAKTIFRIREGAISDLHPAEVIPQVRALLERLVVVRGD-----DVISRE 519
[240][TOP]
>UniRef100_P36594 DNA-directed RNA polymerase II subunit rpb1 n=1
Tax=Schizosaccharomyces pombe RepID=RPB1_SCHPO
Length = 1752
Score = 63.2 bits (152), Expect = 9e-09
Identities = 34/104 (32%), Positives = 58/104 (55%)
Frame = +2
Query: 23 LQESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNI 202
+++ S S Y+ N I + V +LL +E+ QL DR+ L +F G+A+ PL VN+
Sbjct: 908 MEDRSLSLYME----NSIENDSSVQDLLDEEYTQLVADRELLCKFIFPKGDARWPLPVNV 963
Query: 203 ERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
+R+I NA +IF + +DL PS I+ G+ L+ + + +
Sbjct: 964 QRIIQNALQIFHLEAKKPTDLLPSDIINGLNELIAKLTIFRGSD 1007
[241][TOP]
>UniRef100_O01375 DNA-directed RNA polymerase (Fragment) n=1 Tax=Teratorhabditis
palmarum RepID=O01375_9BILA
Length = 631
Score = 62.8 bits (151), Expect = 1e-08
Identities = 31/76 (40%), Positives = 50/76 (65%)
Frame = +2
Query: 110 KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 289
+EW QL++DR LR ++F G+ K+ L N++RLIWNA++IF + +DLSP +++ G
Sbjct: 159 EEWQQLEEDRRLLR-KIFPKGDNKVVLPCNLQRLIWNAQKIFKIETRKVTDLSPVRVIEG 217
Query: 290 VELLLHRTRVLTSDED 337
+ L + V+ S ED
Sbjct: 218 IR-ELSKKLVIVSGED 232
[242][TOP]
>UniRef100_C0JPA2 DNA-directed RNA polymerase (Fragment) n=1 Tax=Trichoplax adhaerens
RepID=C0JPA2_TRIAD
Length = 625
Score = 62.8 bits (151), Expect = 1e-08
Identities = 37/97 (38%), Positives = 55/97 (56%)
Frame = +2
Query: 47 YLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAK 226
YL + I + +V E L E+ QL KDR+ +R + + G++++ L VN+ RLIWNA+
Sbjct: 460 YLHGNIVRSIITDAEVKEKLQSEFEQLSKDRNAVR-SILQNGDSRVALPVNLNRLIWNAQ 518
Query: 227 RIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDED 337
+IF V SDL P K++ V L R V+ ED
Sbjct: 519 KIFHVDPRKSSDLHPMKVIDDV-CELSRKLVIVHGED 554
[243][TOP]
>UniRef100_B3RM26 DNA-directed RNA polymerase n=1 Tax=Trichoplax adhaerens
RepID=B3RM26_TRIAD
Length = 1784
Score = 62.8 bits (151), Expect = 1e-08
Identities = 37/97 (38%), Positives = 55/97 (56%)
Frame = +2
Query: 47 YLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAK 226
YL + I + +V E L E+ QL KDR+ +R + + G++++ L VN+ RLIWNA+
Sbjct: 921 YLHGNIVRSIITDAEVKEKLQSEFEQLSKDRNAVR-SILQNGDSRVALPVNLNRLIWNAQ 979
Query: 227 RIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDED 337
+IF V SDL P K++ V L R V+ ED
Sbjct: 980 KIFHVDPRKSSDLHPMKVIDDV-CELSRKLVIVHGED 1015
[244][TOP]
>UniRef100_A9QMH1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Acrobeles maximus
RepID=A9QMH1_9BILA
Length = 616
Score = 62.8 bits (151), Expect = 1e-08
Identities = 32/95 (33%), Positives = 56/95 (58%)
Frame = +2
Query: 53 SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRI 232
+ + + ++ + + EW QL++DR LR ++F GE+K+ L N++RLIWNA++I
Sbjct: 144 ADSVVKELMGNAEAMREVEAEWQQLEEDRRLLR-KIFPKGESKVHLPCNLKRLIWNAQKI 202
Query: 233 FDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDED 337
F V DL+P +++ GV L + ++ S ED
Sbjct: 203 FHVDLRKTVDLNPVRVIEGVR-ELSKKLIIVSGED 236
[245][TOP]
>UniRef100_A9QMG8 RNA polymerase 2 (Fragment) n=1 Tax=rhabditoid sp. PDL15
RepID=A9QMG8_9BILA
Length = 587
Score = 62.8 bits (151), Expect = 1e-08
Identities = 31/102 (30%), Positives = 58/102 (56%)
Frame = +2
Query: 29 ESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIER 208
E S + + D+ S + + EW QL++DR LR ++F G++K+ L N++R
Sbjct: 120 ERSLRRMFTDEVVRDLQSTPESLKEXESEWXQLEEDRXLLR-KIFPKGDSKVVLPCNLQR 178
Query: 209 LIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
LIWNA++IF V ++L+P +++ GV L + ++ ++
Sbjct: 179 LIWNAQKIFHVETRKXTELNPLRVIEGVRDLSKKLVIVXGED 220
[246][TOP]
>UniRef100_A9QMG6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Teratorhabditis
palmarum RepID=A9QMG6_9BILA
Length = 633
Score = 62.8 bits (151), Expect = 1e-08
Identities = 31/76 (40%), Positives = 50/76 (65%)
Frame = +2
Query: 110 KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 289
+EW QL++DR LR ++F G+ K+ L N++RLIWNA++IF + +DLSP +++ G
Sbjct: 163 EEWQQLEEDRRLLR-KIFPKGDNKVVLPCNLQRLIWNAQKIFKIETRKVTDLSPVRVIEG 221
Query: 290 VELLLHRTRVLTSDED 337
+ L + V+ S ED
Sbjct: 222 IR-ELSKKLVIVSGED 236
[247][TOP]
>UniRef100_A1CNZ4 DNA-directed RNA polymerase n=1 Tax=Aspergillus clavatus
RepID=A1CNZ4_ASPCL
Length = 1765
Score = 62.8 bits (151), Expect = 1e-08
Identities = 40/113 (35%), Positives = 62/113 (54%)
Frame = +2
Query: 14 DLHLQESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLA 193
DL E S P + + A N+I +V L +EW QL KDR FLR V K + + L
Sbjct: 922 DLMDPERSLGPEVLEQA-NEIAGDVEVQRYLDEEWEQLLKDRAFLR-SVVKEDDEMMQLP 979
Query: 194 VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352
+N++R++ A+ F +R+ SDL P+++V V+ LL R V+ D+ +A
Sbjct: 980 INVQRILETARSTFRIREGAISDLHPAEVVPQVQSLLDRLLVVRGDDPISHEA 1032
[248][TOP]
>UniRef100_Q71ET8 DNA-directed RNA polymerase (Fragment) n=1 Tax=Welwitschia mirabilis
RepID=Q71ET8_WELMI
Length = 1013
Score = 62.4 bits (150), Expect = 2e-08
Identities = 31/109 (28%), Positives = 59/109 (54%)
Frame = +2
Query: 26 QESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIE 205
QE+ N Y+ + D+ + + + E L+ DR L E+ +G+ PL VN++
Sbjct: 843 QENWNPGYMLPEHIEDLKTIREFQNVCDAEVQHLENDRRQLGTEIAPSGDNSWPLPVNLK 902
Query: 206 RLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352
RLIWNA+++F + SD+ P +I+ ++ L R +V+ ++ ++A
Sbjct: 903 RLIWNAQKLFKIDPRKASDMHPMEIIDAIDKLQERLKVVPGNDPLSIEA 951
[249][TOP]
>UniRef100_Q2TUN7 DNA-directed RNA polymerase (Fragment) n=1 Tax=Podocarpus
macrophyllus RepID=Q2TUN7_9CONI
Length = 1013
Score = 62.4 bits (150), Expect = 2e-08
Identities = 32/109 (29%), Positives = 59/109 (54%)
Frame = +2
Query: 26 QESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIE 205
QE+ N Y+ + D+ + + + E +L+ DR L E+ +G+ P+ VN++
Sbjct: 843 QENWNPIYMLPEHVEDLKTIREFQNVFDAEVQKLESDRRQLGTEIAPSGDNSCPMPVNLK 902
Query: 206 RLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352
RLIWNA++ F + SD+ P +IV ++ L R +V+ D+ ++A
Sbjct: 903 RLIWNAQKTFKIDPRKPSDMHPMEIVEAIDRLQERLKVVPGDDLISIEA 951
[250][TOP]
>UniRef100_Q1ACU1 RNA polymerase II largest subunit (Fragment) n=1 Tax=Hibbertia
scandens RepID=Q1ACU1_9MAGN
Length = 240
Score = 62.4 bits (150), Expect = 2e-08
Identities = 34/108 (31%), Positives = 59/108 (54%)
Frame = +2
Query: 29 ESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIER 208
E+ N Y+ ++D+ + + + E +L+ DR L E+ TG+ P+ VN++R
Sbjct: 74 ENWNPSYMLSEHVDDLKTIREFRNVFDAEVQKLEADRYQLATEIATTGDNSWPMPVNLKR 133
Query: 209 LIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352
LIWNA++ F V SD+ P +IV V+ L R +V+ D+ ++A
Sbjct: 134 LIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVVPGDDFLSMEA 181