[UP]
[1][TOP]
>UniRef100_O04142 DNA-directed RNA polymerase (Fragment) n=1 Tax=Porphyra yezoensis
RepID=O04142_PORYE
Length = 1685
Score = 342 bits (876), Expect = 1e-92
Identities = 167/168 (99%), Positives = 167/168 (99%)
Frame = +2
Query: 2 DAAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSP 181
DAAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSP
Sbjct: 1441 DAAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSP 1500
Query: 182 AYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMS 361
AYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMS
Sbjct: 1501 AYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMS 1560
Query: 362 PRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
PRFGGGL GGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY
Sbjct: 1561 PRFGGGLCGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 1608
[2][TOP]
>UniRef100_O09451 DNA-directed RNA polymerase (Fragment) n=1 Tax=Bonnemaisonia hamifera
RepID=O09451_9FLOR
Length = 1732
Score = 82.4 bits (202), Expect = 2e-14
Identities = 72/191 (37%), Positives = 88/191 (46%), Gaps = 24/191 (12%)
Frame = +2
Query: 2 DAAASARIARSPAMPESERG---YTPGREGQRTPGR--AFDAAMTPTYAYSPARARTPGG 166
DA AS + +SPA + G ++P R G TPGR AFDA TP YSPA TP
Sbjct: 1416 DAQASMGLGQSPAGNRTYEGASVWSPAR-GDATPGRKKAFDARATPGLLYSPAAWGTPLR 1474
Query: 167 TAFSPAYTGPGGFSPINATASFSPI-MSSADAAGRATPGRMTPGRSPAGRFTPRMSP--- 334
SP A+FSP M+ A G G +TP +SP +T +SP
Sbjct: 1475 PRTEQGLDQQ--MSPSADGAAFSPTPMTPGGAGGGGGMGGLTPLQSPGREYTVPLSPGGG 1532
Query: 335 ------------ASPGYAAMSPRFG--GGLGGGPAGGAGAYAPASPAYMATSPGMG-YSP 469
+SPGYA R GG G G +G +APASPAY TSPG Y+
Sbjct: 1533 GTSPFYSQSPYASSPGYAQSPGRMQSPGGAGAYGIGSSGTFAPASPAYRPTSPGPSPYAA 1592
Query: 470 STPALAVSSPG 502
+PA SPG
Sbjct: 1593 QSPA---QSPG 1600
Score = 56.6 bits (135), Expect = 9e-07
Identities = 59/178 (33%), Positives = 77/178 (43%), Gaps = 20/178 (11%)
Frame = +2
Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGFSP 211
+PA P Y P G +P A A +P YSP ++R A A + GG
Sbjct: 1574 APASP----AYRPTSPGP-SPYAAQSPAQSPGVQYSPDKSRVQVQRAPPTAPSAAGG--- 1625
Query: 212 INATASFSPIMSSADAAGRATPGR----MTPGRSPAGRFTPRMSPASPGYAAMSPRFGGG 379
A+ S+SP S + G A+PG +PG SP+ SP+SP AA SP
Sbjct: 1626 -GASRSYSPSSPSYNGRGAASPGANYVAASPGYSPSS--PGAYSPSSP--AAFSP----- 1675
Query: 380 LGGGPAGGAGAYAPASPAYMAT----------------SPGMGYSPSTPALAVSSPGY 505
PA AG Y+P++PAY A S G SPS+P + SSP Y
Sbjct: 1676 --SSPA--AGGYSPSTPAYTANAAANQYSYARSPRYPPSYANGTSPSSPQYSPSSPQY 1729
[3][TOP]
>UniRef100_UPI00005A0B1A PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
(RPB1) isoform 6 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B1A
Length = 1767
Score = 79.3 bits (194), Expect = 1e-13
Identities = 50/131 (38%), Positives = 68/131 (51%), Gaps = 2/131 (1%)
Frame = +2
Query: 119 TPTY-AYSPARARTPGGTAFSP-AYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTP 292
TP Y A+SP TPG FSP A + GFSP + ++SP S + G ++P +P
Sbjct: 1501 TPAYGAWSPRSGMTPGAAGFSPSAASDASGFSP-GYSPAWSPTPGSPGSPGPSSPYIPSP 1559
Query: 293 GRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPS 472
G G +P SP SP Y SP GG + +Y+P SP+Y TSP YSP+
Sbjct: 1560 GELSCGAMSPSYSPTSPAYEPRSP-------GGYTPQSPSYSPTSPSYSPTSP--SYSPT 1610
Query: 473 TPALAVSSPGY 505
+P + +SP Y
Sbjct: 1611 SPNYSPTSPSY 1621
Score = 53.9 bits (128), Expect = 6e-06
Identities = 50/190 (26%), Positives = 77/190 (40%), Gaps = 30/190 (15%)
Frame = +2
Query: 26 ARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARAR----TPGGTAFS 178
A SP+ + Y P G TP + +P+Y+ YSP +P + S
Sbjct: 1566 AMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTS 1625
Query: 179 PAY--TGPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGY 349
P+Y T P +SP + + S SP S + T +P +P SP SP Y
Sbjct: 1626 PSYSPTSPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1684
Query: 350 AAMSPRFG------GGLGGGPAGGAGAYAPASPAYMATSPGMG------------YSPST 475
+ SP + + + +Y+P SP+Y TSP YSP++
Sbjct: 1685 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPSRPNYTPTSPSYSPTS 1744
Query: 476 PALAVSSPGY 505
P+ + +SP Y
Sbjct: 1745 PSYSPTSPNY 1754
[4][TOP]
>UniRef100_A8PU11 DNA-directed RNA polymerase n=1 Tax=Brugia malayi RepID=A8PU11_BRUMA
Length = 1943
Score = 77.4 bits (189), Expect = 5e-13
Identities = 58/168 (34%), Positives = 78/168 (46%), Gaps = 34/168 (20%)
Frame = +2
Query: 104 FDAAMTPTY--AYSPARAR--TPGGTAFSPAYTGPGGFSPINATASFSPIMS-------S 250
++A TP Y A+SPA TPGG FSP+ GGFSP S+SP S
Sbjct: 1582 WNAGTTPAYGAAWSPATGSGMTPGGAGFSPSGHSEGGFSPYGGGGSWSPGSPGGSLGGMS 1641
Query: 251 ADAAGRATP----------GRMTPGRSPA-------------GRFTPRMSPASPGYAAMS 361
AG +P G +PG SP G +PR SP SP Y+ S
Sbjct: 1642 PSGAGAYSPAASDYGSGLEGLSSPGYSPTSPASPYGASSPAYGVMSPRYSPTSPSYSPTS 1701
Query: 362 PRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
P + + + +Y+P SP+Y TSP GYSP++P+ + +SP Y
Sbjct: 1702 PSY-SPTSPSYSPTSPSYSPTSPSYSPTSP--GYSPTSPSYSPTSPSY 1746
Score = 67.0 bits (162), Expect = 7e-10
Identities = 57/171 (33%), Positives = 80/171 (46%), Gaps = 11/171 (6%)
Frame = +2
Query: 26 ARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPA--------RARTPGGTAFSP 181
A SPA + Y G EG +PG + + +P A SPA +P + SP
Sbjct: 1647 AYSPAASD----YGSGLEGLSSPGYSPTSPASPYGASSPAYGVMSPRYSPTSPSYSPTSP 1702
Query: 182 AY--TGPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYA 352
+Y T P +SP + + S SP S T +P +P SPASPGY+
Sbjct: 1703 SYSPTSP-SYSPTSPSYSPTSPSYSPTSPGYSPTSPSYSPTSPSYSPTSPSYSPASPGYS 1761
Query: 353 AMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
SPR+ + + Y+P SPAY TSP YSP++P+ + +SPGY
Sbjct: 1762 PSSPRY-SPTSPAYSPTSPTYSPTSPAYSPTSP--TYSPTSPSYSPASPGY 1809
Score = 65.5 bits (158), Expect = 2e-09
Identities = 54/167 (32%), Positives = 83/167 (49%), Gaps = 9/167 (5%)
Frame = +2
Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTY-----AYSPARARTPGGTAFSPAYTGP 196
SP + Y+P G +P + +PTY AYSP+ +P + SP Y
Sbjct: 1792 SPTYSPTSPSYSPASPGY-SPSSPRYSPTSPTYSPTSPAYSPS---SPQYSPSSPQY--- 1844
Query: 197 GGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFG- 373
SP ++ ++P + DA+ +P +P SP+ +PR SP+SP Y+ SP++
Sbjct: 1845 ---SP--SSPQYTPSSPAGDASPAYSP--TSPQYSPS---SPRYSPSSPQYSPTSPQYSP 1894
Query: 374 ---GGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
GG G + + Y+P+SP Y +SP YSPS+P + SSP Y
Sbjct: 1895 SSPGGAGTSYSRSSPQYSPSSPQYSPSSP--QYSPSSPQYSPSSPQY 1939
Score = 61.6 bits (148), Expect = 3e-08
Identities = 56/166 (33%), Positives = 78/166 (46%), Gaps = 8/166 (4%)
Frame = +2
Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY--T 190
SP+ + Y+P G ++ +P+Y+ YSPA +PG + SP Y T
Sbjct: 1715 SPSYSPTSPSYSPTSPGYSPTSPSYSPT-SPSYSPTSPSYSPA---SPGYSPSSPRYSPT 1770
Query: 191 GPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPR 367
P +SP + T S SP S +P SP +P SPASPGY+ SPR
Sbjct: 1771 SPA-YSPTSPTYSPTSPAYSPT-----------SPTYSPT---SPSYSPASPGYSPSSPR 1815
Query: 368 FGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
+ + + Y+P SPAY +SP YSPS+P + SSP Y
Sbjct: 1816 Y--------SPTSPTYSPTSPAYSPSSP--QYSPSSPQYSPSSPQY 1851
[5][TOP]
>UniRef100_UPI00019270BB PREDICTED: similar to DNA-directed RNA polymerase II subunit RPB1
isoform 1 n=1 Tax=Hydra magnipapillata
RepID=UPI00019270BB
Length = 2041
Score = 76.6 bits (187), Expect = 8e-13
Identities = 63/174 (36%), Positives = 86/174 (49%), Gaps = 7/174 (4%)
Frame = +2
Query: 5 AAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-YSPARARTPGGTAFSP 181
+AAS A SP M +G+TPG +P A + MTP A +SP+ G FSP
Sbjct: 1508 SAASPSNAMSPQMTPWNQGHTPGYGDGWSP--ALGSGMTPGAASFSPSAHSDASG--FSP 1563
Query: 182 AYTGPGGFSPINATASFSPIMSSADAAGRATPGR--MTPGRSPAGRF----TPRMSPASP 343
A GGFSP + + S + +P R M+P SP +P MSP+SP
Sbjct: 1564 A----GGFSPAWSPQDSMSLGSPDSSPYIPSPSRNVMSPSYSPNSPAFNPQSPAMSPSSP 1619
Query: 344 GYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
GY+ SP + G Y+P SP+Y TSP GYSP++P+ + +SP Y
Sbjct: 1620 GYSPTSPLYSPTSPG--------YSPTSPSYSPTSP--GYSPTSPSYSPTSPSY 1663
Score = 56.6 bits (135), Expect = 9e-07
Identities = 48/166 (28%), Positives = 75/166 (45%), Gaps = 8/166 (4%)
Frame = +2
Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY--T 190
SP+ + Y+P ++ +P+Y+ YSP +P + SP+Y T
Sbjct: 1660 SPSYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPSYSPT---SPSYSPTSPSYSPT 1715
Query: 191 GPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPR 367
P +SP + + S SPI S + T +P +P+ SP SP Y+ SP
Sbjct: 1716 SPS-YSPTSPSYSPTSPIYSPTSPSYSPTSPSYSPTSPSYSPTSPKYSPTSPSYSPTSPS 1774
Query: 368 FGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
+ + + Y+P SPAY SP YSPS+P+ + +SP Y
Sbjct: 1775 Y--------SPSSPQYSPTSPAYSPQSP--SYSPSSPSYSPTSPKY 1810
[6][TOP]
>UniRef100_UPI00019270E9 PREDICTED: similar to DNA-directed RNA polymerase II subunit RPB1
isoform 2 n=1 Tax=Hydra magnipapillata
RepID=UPI00019270E9
Length = 2014
Score = 76.3 bits (186), Expect = 1e-12
Identities = 59/168 (35%), Positives = 81/168 (48%), Gaps = 1/168 (0%)
Frame = +2
Query: 5 AAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-YSPARARTPGGTAFSP 181
+AAS A SP M +G+TPG +P A + MTP A +SP+ G FSP
Sbjct: 1501 SAASPSNAMSPQMTPWNQGHTPGYGDGWSP--ALGSGMTPGAASFSPSAHSDASG--FSP 1556
Query: 182 AYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMS 361
A GGFSP + P S A M+P +P SP SPGY+ S
Sbjct: 1557 A----GGFSPAWSPQDSIPSYSPNSPAFNPQSPAMSPSSPGYSPTSPLYSPTSPGYSPTS 1612
Query: 362 PRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
P + G + + +Y+P SP+Y TSP YSP++P+ + +SP Y
Sbjct: 1613 PSY-SPTSPGYSPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1657
Score = 56.6 bits (135), Expect = 9e-07
Identities = 48/166 (28%), Positives = 75/166 (45%), Gaps = 8/166 (4%)
Frame = +2
Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY--T 190
SP+ + Y+P ++ +P+Y+ YSP +P + SP+Y T
Sbjct: 1633 SPSYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPSYSPT---SPSYSPTSPSYSPT 1688
Query: 191 GPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPR 367
P +SP + + S SPI S + T +P +P+ SP SP Y+ SP
Sbjct: 1689 SPS-YSPTSPSYSPTSPIYSPTSPSYSPTSPSYSPTSPSYSPTSPKYSPTSPSYSPTSPS 1747
Query: 368 FGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
+ + + Y+P SPAY SP YSPS+P+ + +SP Y
Sbjct: 1748 Y--------SPSSPQYSPTSPAYSPQSP--SYSPSSPSYSPTSPKY 1783
[7][TOP]
>UniRef100_UPI0000E48672 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
(RPB1) isoform 2 n=1 Tax=Strongylocentrotus purpuratus
RepID=UPI0000E48672
Length = 1913
Score = 75.9 bits (185), Expect = 1e-12
Identities = 61/176 (34%), Positives = 84/176 (47%), Gaps = 9/176 (5%)
Frame = +2
Query: 5 AAASARIARSPAMPESERGYTPGREGQRTPGR-AFDAAMTPTYAYSPA-------RARTP 160
A S + SP M +G TP TPG F A + + +SPA + ++P
Sbjct: 1504 AMGSPSQSMSPQMTPWNQGATPMHGSGMTPGGPGFSPANSESTGFSPAYSPAWSPQPQSP 1563
Query: 161 GGTAFSPAYTGPGG-FSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPA 337
G A SP P G SP S+SP S A ATP +PG SP +P SP
Sbjct: 1564 GSPANSPYIPSPAGPMSP-----SYSPASPSYLPASPATP--QSPGYSPT---SPSYSPT 1613
Query: 338 SPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
SPGY+ SP + + + +Y+P SP+Y TSP YSP++P+ + +SP Y
Sbjct: 1614 SPGYSPASPSYSP-TSPSYSPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1666
Score = 74.7 bits (182), Expect = 3e-12
Identities = 54/156 (34%), Positives = 72/156 (46%), Gaps = 18/156 (11%)
Frame = +2
Query: 92 PGRAFDAAMTPTYAYSP-------------ARARTPGGTAFSPAYTGPGGFSPINATASF 232
PG F A +P+ + SP TPGG FSPA + GFSP ++
Sbjct: 1498 PGMLFGAMGSPSQSMSPQMTPWNQGATPMHGSGMTPGGPGFSPANSESTGFSP-----AY 1552
Query: 233 SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 412
SP S + +P SPAG +P SPASP Y SP G P + +
Sbjct: 1553 SPAWSPQPQSP-GSPANSPYIPSPAGPMSPSYSPASPSYLPASPATPQSPGYSPTSPSYS 1611
Query: 413 -----YAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
Y+PASP+Y TSP YSP++P+ + +SP Y
Sbjct: 1612 PTSPGYSPASPSYSPTSP--SYSPTSPSYSPTSPSY 1645
Score = 58.5 bits (140), Expect = 2e-07
Identities = 48/166 (28%), Positives = 78/166 (46%), Gaps = 8/166 (4%)
Frame = +2
Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARAR-TPGGTAFSPAYTG 193
SP+ S Y+P ++ + +P+Y+ YSP+ + +P ++SP T
Sbjct: 1747 SPSYSPSSPKYSPTSPSYSPTSPSY-SPQSPSYSPGSPSYSPSSPKYSPTSPSYSP--TS 1803
Query: 194 PGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRF 370
P +SP + S SP S A + T + +P +P SP SP Y+ SP +
Sbjct: 1804 PS-YSPTSPNFSPSSPTYSPASPSYSPTSPKYSPSSPKYSPTSPTYSPTSPKYSPASPTY 1862
Query: 371 GGGLGGGPAGGAGAYAPASPAYMATSP-GMGYSPSTPALAVSSPGY 505
+ + Y+P+SP Y TSP G YSP++P+ + +SP Y
Sbjct: 1863 --------SPTSPKYSPSSPTYSPTSPKGSTYSPTSPSYSPTSPSY 1900
Score = 54.3 bits (129), Expect = 4e-06
Identities = 47/172 (27%), Positives = 74/172 (43%), Gaps = 14/172 (8%)
Frame = +2
Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY--T 190
SP+ + Y+P ++ +P+Y+ YSP +P + SP+Y T
Sbjct: 1663 SPSYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPSYSPT---SPSYSPTSPSYSPT 1718
Query: 191 GPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPR 367
P +SP + + S SP S + T +P +P SP SP Y+ SP
Sbjct: 1719 SPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPKYSPTSPSYSPTSPSYSPQSPS 1777
Query: 368 FGGGLGGGPAGG------AGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
+ G + +Y+P SP+Y TSP +SPS+P + +SP Y
Sbjct: 1778 YSPGSPSYSPSSPKYSPTSPSYSPTSPSYSPTSP--NFSPSSPTYSPASPSY 1827
Score = 53.9 bits (128), Expect = 6e-06
Identities = 42/149 (28%), Positives = 65/149 (43%), Gaps = 6/149 (4%)
Frame = +2
Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARAR-TPGGTAFSPAYTG 193
SP+ Y+PG +P + +P+Y+ YSP +P +SPA
Sbjct: 1768 SPSYSPQSPSYSPGSPSY-SPSSPKYSPTSPSYSPTSPSYSPTSPNFSPSSPTYSPASPS 1826
Query: 194 PGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFG 373
SP + +S P S T + +P +P+ SP+SP Y+ SP+
Sbjct: 1827 YSPTSPKYSPSS--PKYSPTSPTYSPTSPKYSPASPTYSPTSPKYSPSSPTYSPTSPK-- 1882
Query: 374 GGLGGGPAGGAGAYAPASPAYMATSPGMG 460
G + + +Y+P SP+Y TSPGMG
Sbjct: 1883 ---GSTYSPTSPSYSPTSPSYSPTSPGMG 1908
Score = 53.5 bits (127), Expect = 8e-06
Identities = 49/163 (30%), Positives = 76/163 (46%), Gaps = 6/163 (3%)
Frame = +2
Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAY--TGPGGF 205
SP+ + Y+P + +PG + +P Y SP +P + SP+Y T P F
Sbjct: 1761 SPSYSPTSPSYSP-QSPSYSPGSPSYSPSSPKY--SPT---SPSYSPTSPSYSPTSPN-F 1813
Query: 206 SPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGL 382
SP + T S SP S + + +P +P+ SPASP Y+ SP++
Sbjct: 1814 SPSSPTYSPASPSYSPTSPKYSPSSPKYSPTSPTYSPTSPKYSPASPTYSPTSPKY---- 1869
Query: 383 GGGPAGGAGAYAPASP---AYMATSPGMGYSPSTPALAVSSPG 502
+ + Y+P SP Y TSP YSP++P+ + +SPG
Sbjct: 1870 ----SPSSPTYSPTSPKGSTYSPTSPS--YSPTSPSYSPTSPG 1906
[8][TOP]
>UniRef100_Q9BMP3 DNA-directed RNA polymerase (Fragment) n=1 Tax=Monosiga brevicollis
RepID=Q9BMP3_MONBE
Length = 1743
Score = 75.9 bits (185), Expect = 1e-12
Identities = 57/155 (36%), Positives = 82/155 (52%), Gaps = 8/155 (5%)
Frame = +2
Query: 59 GYTPGREGQRTPGRAFDA---AMTPTYAYSPARARTPGGTAFSPAY--TGPGGFSPINAT 223
G++P G +PG A +P A SP A +PG + SP Y + P G+SP +
Sbjct: 1459 GFSPVVAGAFSPGGMLSPGGIAQSPGGAMSPGGAMSPGVVSASPFYDPSSPAGYSP--TS 1516
Query: 224 ASFSPIMSSADAAGRATPGRMTPGRSPAGRFTP---RMSPASPGYAAMSPRFGGGLGGGP 394
S+SP ++ +PG +P SPAG FTP SP SP Y+ SP GG
Sbjct: 1517 PSYSP---TSPGMSPTSPG-FSPA-SPAG-FTPTSPHYSPTSPSYSPTSPNVGGAQSPSY 1570
Query: 395 AGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSP 499
+ + +Y+P+SPAY A SP YSP++P+ + +SP
Sbjct: 1571 SPTSPSYSPSSPAYNAQSP--AYSPTSPSYSPTSP 1603
Score = 69.7 bits (169), Expect = 1e-10
Identities = 58/171 (33%), Positives = 72/171 (42%), Gaps = 24/171 (14%)
Frame = +2
Query: 65 TPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGFSPINATASFSPIM 244
TP EG TP MTP A SP F T GGFSP+ A A M
Sbjct: 1425 TPWGEGNATPFGM--GGMTPQNASSPY---------FGAGQTPIGGFSPVVAGAFSPGGM 1473
Query: 245 SSADAAGRATPGRMTPG----------------RSPAG--RFTPRMSPASPGYAAMSPRF 370
S ++ G M+PG SPAG +P SP SPG + SP F
Sbjct: 1474 LSPGGIAQSPGGAMSPGGAMSPGVVSASPFYDPSSPAGYSPTSPSYSPTSPGMSPTSPGF 1533
Query: 371 GGGLGGGPAGGAGAYAPASPAYMATSPGMG------YSPSTPALAVSSPGY 505
G + Y+P SP+Y TSP +G YSP++P+ + SSP Y
Sbjct: 1534 SPASPAGFTPTSPHYSPTSPSYSPTSPNVGGAQSPSYSPTSPSYSPSSPAY 1584
Score = 64.7 bits (156), Expect = 3e-09
Identities = 53/171 (30%), Positives = 82/171 (47%), Gaps = 13/171 (7%)
Frame = +2
Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTY---------AYSPARART-PGGTAFSP 181
SP M + G++P TP + +P+Y A SP+ + T P + SP
Sbjct: 1523 SPGMSPTSPGFSPASPAGFTPTSPHYSPTSPSYSPTSPNVGGAQSPSYSPTSPSYSPSSP 1582
Query: 182 AYTGPG-GFSPINATASFSPIMSSADAAGRATPG--RMTPGRSPAGRFTPRMSPASPGYA 352
AY +SP + S+SP +S + +PG +PG SP+ +P SP SP Y+
Sbjct: 1583 AYNAQSPAYSP--TSPSYSP--TSPNVKSPTSPGYSPTSPGYSPS---SPSYSPTSPNYS 1635
Query: 353 AMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
SP + + + Y+P SP+Y TSP YSP++P+ + +SP Y
Sbjct: 1636 PTSPSY--------SPTSPNYSPTSPSYSPTSP--NYSPTSPSYSPTSPNY 1676
Score = 60.1 bits (144), Expect = 8e-08
Identities = 47/180 (26%), Positives = 75/180 (41%), Gaps = 20/180 (11%)
Frame = +2
Query: 26 ARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGF 205
A+SP+ + Y+P A+ +P+Y+ + ++P +SP T PG +
Sbjct: 1565 AQSPSYSPTSPSYSPSSPAYNAQSPAYSPT-SPSYSPTSPNVKSPTSPGYSP--TSPG-Y 1620
Query: 206 SPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFG--- 373
SP + + S SP S + T +P +P SP SP Y+ SP +
Sbjct: 1621 SPSSPSYSPTSPNYSPTSPSYSPTSPNYSPTSPSYSPTSPNYSPTSPSYSPTSPNYSPTS 1680
Query: 374 ---GGLGGGPAGGAGAYAPASPAYMATSPGM-------------GYSPSTPALAVSSPGY 505
+ + +Y+P SP Y TSP GYSP++P + +SPGY
Sbjct: 1681 PSYSPTSPNYSPTSPSYSPTSPNYSPTSPSYSPTANGTSGPTSPGYSPTSPGYSPTSPGY 1740
Score = 55.5 bits (132), Expect = 2e-06
Identities = 48/163 (29%), Positives = 67/163 (41%), Gaps = 14/163 (8%)
Frame = +2
Query: 26 ARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY- 187
A+SPA + Y+P ++P + +P Y+ YSP +P + SP+Y
Sbjct: 1586 AQSPAYSPTSPSYSPTSPNVKSPTSPGYSPTSPGYSPSSPSYSPT---SPNYSPTSPSYS 1642
Query: 188 -TGPG------GFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASP 343
T P +SP + S SP S T +P +P SP SP
Sbjct: 1643 PTSPNYSPTSPSYSPTSPNYSPTSPSYSPTSPNYSPTSPSYSPTSPNYSPTSPSYSPTSP 1702
Query: 344 GYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPS 472
Y+ SP + G + Y+P SP Y TSP GYSPS
Sbjct: 1703 NYSPTSPSYSPTANGTSGPTSPGYSPTSPGYSPTSP--GYSPS 1743
[9][TOP]
>UniRef100_A9V5W6 DNA-directed RNA polymerase n=1 Tax=Monosiga brevicollis
RepID=A9V5W6_MONBE
Length = 1307
Score = 75.9 bits (185), Expect = 1e-12
Identities = 57/155 (36%), Positives = 82/155 (52%), Gaps = 8/155 (5%)
Frame = +2
Query: 59 GYTPGREGQRTPGRAFDA---AMTPTYAYSPARARTPGGTAFSPAY--TGPGGFSPINAT 223
G++P G +PG A +P A SP A +PG + SP Y + P G+SP +
Sbjct: 1023 GFSPVVAGAFSPGGMLSPGGIAQSPGGAMSPGGAMSPGVVSASPFYDPSSPAGYSP--TS 1080
Query: 224 ASFSPIMSSADAAGRATPGRMTPGRSPAGRFTP---RMSPASPGYAAMSPRFGGGLGGGP 394
S+SP ++ +PG +P SPAG FTP SP SP Y+ SP GG
Sbjct: 1081 PSYSP---TSPGMSPTSPG-FSPA-SPAG-FTPTSPHYSPTSPSYSPTSPNVGGAQSPSY 1134
Query: 395 AGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSP 499
+ + +Y+P+SPAY A SP YSP++P+ + +SP
Sbjct: 1135 SPTSPSYSPSSPAYNAQSP--AYSPTSPSYSPTSP 1167
Score = 64.7 bits (156), Expect = 3e-09
Identities = 53/171 (30%), Positives = 82/171 (47%), Gaps = 13/171 (7%)
Frame = +2
Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTY---------AYSPARART-PGGTAFSP 181
SP M + G++P TP + +P+Y A SP+ + T P + SP
Sbjct: 1087 SPGMSPTSPGFSPASPAGFTPTSPHYSPTSPSYSPTSPNVGGAQSPSYSPTSPSYSPSSP 1146
Query: 182 AYTGPG-GFSPINATASFSPIMSSADAAGRATPG--RMTPGRSPAGRFTPRMSPASPGYA 352
AY +SP + S+SP +S + +PG +PG SP+ +P SP SP Y+
Sbjct: 1147 AYNAQSPAYSP--TSPSYSP--TSPNVKSPTSPGYSPTSPGYSPS---SPSYSPTSPNYS 1199
Query: 353 AMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
SP + + + Y+P SP+Y TSP YSP++P+ + +SP Y
Sbjct: 1200 PTSPSY--------SPTSPNYSPTSPSYSPTSP--NYSPTSPSYSPTSPNY 1240
Score = 60.1 bits (144), Expect = 8e-08
Identities = 47/180 (26%), Positives = 75/180 (41%), Gaps = 20/180 (11%)
Frame = +2
Query: 26 ARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGF 205
A+SP+ + Y+P A+ +P+Y+ + ++P +SP T PG +
Sbjct: 1129 AQSPSYSPTSPSYSPSSPAYNAQSPAYSPT-SPSYSPTSPNVKSPTSPGYSP--TSPG-Y 1184
Query: 206 SPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFG--- 373
SP + + S SP S + T +P +P SP SP Y+ SP +
Sbjct: 1185 SPSSPSYSPTSPNYSPTSPSYSPTSPNYSPTSPSYSPTSPNYSPTSPSYSPTSPNYSPTS 1244
Query: 374 ---GGLGGGPAGGAGAYAPASPAYMATSPGM-------------GYSPSTPALAVSSPGY 505
+ + +Y+P SP Y TSP GYSP++P + +SPGY
Sbjct: 1245 PSYSPTSPNYSPTSPSYSPTSPNYSPTSPSYSPTANGTSGPTSPGYSPTSPGYSPTSPGY 1304
Score = 56.2 bits (134), Expect = 1e-06
Identities = 44/124 (35%), Positives = 62/124 (50%), Gaps = 5/124 (4%)
Frame = +2
Query: 149 ARTPGGTAFSPAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTP----GRSPAGRF 316
A TP G + + G GG +P NA++ + AG+ G +P SP G
Sbjct: 987 AATPWGEGNATPF-GMGGMTPQNASSPYL-------GAGQTPIGGFSPVVAGAFSPGGML 1038
Query: 317 TPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPA-YMATSPGMGYSPSTPALAVS 493
+P SPG AMSP GG + G + Y P+SPA Y TSP YSP++P ++ +
Sbjct: 1039 SPGGIAQSPG-GAMSP--GGAMSPGVVSASPFYDPSSPAGYSPTSPS--YSPTSPGMSPT 1093
Query: 494 SPGY 505
SPG+
Sbjct: 1094 SPGF 1097
Score = 55.5 bits (132), Expect = 2e-06
Identities = 48/163 (29%), Positives = 67/163 (41%), Gaps = 14/163 (8%)
Frame = +2
Query: 26 ARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY- 187
A+SPA + Y+P ++P + +P Y+ YSP +P + SP+Y
Sbjct: 1150 AQSPAYSPTSPSYSPTSPNVKSPTSPGYSPTSPGYSPSSPSYSPT---SPNYSPTSPSYS 1206
Query: 188 -TGPG------GFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASP 343
T P +SP + S SP S T +P +P SP SP
Sbjct: 1207 PTSPNYSPTSPSYSPTSPNYSPTSPSYSPTSPNYSPTSPSYSPTSPNYSPTSPSYSPTSP 1266
Query: 344 GYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPS 472
Y+ SP + G + Y+P SP Y TSP GYSPS
Sbjct: 1267 NYSPTSPSYSPTANGTSGPTSPGYSPTSPGYSPTSP--GYSPS 1307
[10][TOP]
>UniRef100_A7S8F9 DNA-directed RNA polymerase n=1 Tax=Nematostella vectensis
RepID=A7S8F9_NEMVE
Length = 1929
Score = 75.9 bits (185), Expect = 1e-12
Identities = 58/173 (33%), Positives = 83/173 (47%), Gaps = 7/173 (4%)
Frame = +2
Query: 8 AASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-YSPARARTPGGTAFSPA 184
AA + A SP M G TP +PG + MTP A +SP+ A G +
Sbjct: 1503 AAGSPSAMSPQMTPWNMGATPAYMEAWSPGMG--SGMTPGAASFSPSAASDASGMS---- 1556
Query: 185 YTGPGGFSPI-NATASFSPIMSSADAAGRATPGRMTPGRSPAGRF----TPRMSPASPGY 349
PGGFSP + SP+ + +P +PG SP+ +P MSPASP Y
Sbjct: 1557 ---PGGFSPSWMSPTPGSPVSPGPTSPYIPSPAAASPGYSPSSPAFMPSSPSMSPASPSY 1613
Query: 350 AAMSPRFG-GGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
+ SP + G + + +Y+P SP+Y TSP YSP++P+ + +SP Y
Sbjct: 1614 SPTSPGYSPSSPSSGYSPASPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1664
Score = 57.0 bits (136), Expect = 7e-07
Identities = 48/171 (28%), Positives = 76/171 (44%), Gaps = 13/171 (7%)
Frame = +2
Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY--T 190
SP+ + Y+P ++ +P+Y+ YSP +P + SP+Y T
Sbjct: 1661 SPSYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPSYSPT---SPSYSPTSPSYSPT 1716
Query: 191 GPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPR 367
P +SP + + S SP S + T +P +P SP+SP Y+ SP
Sbjct: 1717 SPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYSPSSPS 1775
Query: 368 FGGGLGGGPAGGAGAYAPASPAYMATSP-----GMGYSPSTPALAVSSPGY 505
+ + + Y+PASP+Y TSP YSP++P+ + SSP Y
Sbjct: 1776 YSPQSPSYASPSSPKYSPASPSYSPTSPKYSPTSPNYSPASPSYSPSSPKY 1826
Score = 55.1 bits (131), Expect = 3e-06
Identities = 51/161 (31%), Positives = 72/161 (44%), Gaps = 3/161 (1%)
Frame = +2
Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAY--TGPGGF 205
SP+ S Y+P ++ + +P Y SPA +P + SP Y T P +
Sbjct: 1759 SPSYSPSSPSYSPSSPSYSPQSPSYASPSSPKY--SPA---SPSYSPTSPKYSPTSPN-Y 1812
Query: 206 SPINATASFSPIMSSADAAGRA-TPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGL 382
SP A+ S+SP + TP +P SPA +P SP+SP Y+ SPR
Sbjct: 1813 SP--ASPSYSPSSPKYSPTSPSYTPA--SPSYSPA---SPSYSPSSPSYSPSSPR----- 1860
Query: 383 GGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
Y P SP Y TSP YSP++P + ++P Y
Sbjct: 1861 ----------YTPTSPQYSPTSP--KYSPASPNYSPTTPSY 1889
[11][TOP]
>UniRef100_UPI00005A0B2A PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
(RPB1) isoform 21 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B2A
Length = 1896
Score = 74.7 bits (182), Expect = 3e-12
Identities = 57/152 (37%), Positives = 73/152 (48%), Gaps = 3/152 (1%)
Frame = +2
Query: 59 GYTPGREGQRTPGRA-FDAAMTPTY-AYSPARARTPGGTAFSP-AYTGPGGFSPINATAS 229
G P G +P ++ TP Y A+SP TPG FSP A + GFSP
Sbjct: 1505 GSAPSPMGGISPAMTPWNQGATPAYGAWSPRSGMTPGAAGFSPSAASDASGFSP-----G 1559
Query: 230 FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAG 409
+SP S TPG +PG SP G +P SP SP Y SP GG +
Sbjct: 1560 YSPAWSP-------TPG--SPG-SPGGAMSPSYSPTSPAYEPRSP-------GGYTPQSP 1602
Query: 410 AYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
+Y+P SP+Y TSP YSP++P + +SP Y
Sbjct: 1603 SYSPTSPSYSPTSP--SYSPTSPNYSPTSPSY 1632
Score = 68.2 bits (165), Expect = 3e-10
Identities = 56/164 (34%), Positives = 80/164 (48%), Gaps = 15/164 (9%)
Frame = +2
Query: 59 GYTPGREGQRTPGRAFDAA-MTPTYAYSPARARTPG-----GTAFSPAYT---------G 193
G TPG G +P A DA+ +P YSPA + TPG G A SP+Y+
Sbjct: 1537 GMTPGAAGF-SPSAASDASGFSP--GYSPAWSPTPGSPGSPGGAMSPSYSPTSPAYEPRS 1593
Query: 194 PGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFG 373
PGG++P + S+SP S +P SP +P SP SP Y+ SP +
Sbjct: 1594 PGGYTP--QSPSYSPTSPSYSPT--------SPSYSPT---SPNYSPTSPSYSPTSPSY- 1639
Query: 374 GGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
+ + +Y+P SP+Y TSP YSP++P+ + +SP Y
Sbjct: 1640 -------SPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1674
Score = 54.3 bits (129), Expect = 4e-06
Identities = 47/166 (28%), Positives = 75/166 (45%), Gaps = 8/166 (4%)
Frame = +2
Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY--T 190
SP+ + Y+P ++ +P+Y+ YSP +P + SP+Y T
Sbjct: 1650 SPSYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPSYSPT---SPSYSPTSPSYSPT 1705
Query: 191 GPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPR 367
P +SP + + S SP S + T +P R +P SP SP Y+ SP+
Sbjct: 1706 SPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPSRPNYTPTSPSYSPTSPSYSPTSPK 1764
Query: 368 FGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
+ + +Y+P+SP Y TSP YSP++P + +SP Y
Sbjct: 1765 Y--------TPTSPSYSPSSPEYTPTSP--KYSPTSPKYSPTSPKY 1800
[12][TOP]
>UniRef100_UPI00017B0A92 UPI00017B0A92 related cluster n=1 Tax=Tetraodon nigroviridis
RepID=UPI00017B0A92
Length = 1714
Score = 74.7 bits (182), Expect = 3e-12
Identities = 57/164 (34%), Positives = 74/164 (45%), Gaps = 18/164 (10%)
Frame = +2
Query: 68 PGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAY------------TGPGGFSP 211
PG + G F +A +P SPA TP T +PAY G GFSP
Sbjct: 1468 PGISVAGSTGMFFGSAPSPMSGMSPAM--TPWNTGATPAYGAWSPSVGSGMTPGAAGFSP 1525
Query: 212 INAT--ASFSPIMSSADAAGRATPGRMTPGR----SPAGRFTPRMSPASPGYAAMSPRFG 373
A+ + FSP S A + +PG P SP G +P SP SP Y SP
Sbjct: 1526 SAASDASGFSPGYSPAWSPTPGSPGSPGPASPYIPSPGGAMSPNYSPTSPAYEPRSP--- 1582
Query: 374 GGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
GG + Y+P SP+Y TSP YSP++P+ + +SP Y
Sbjct: 1583 ----GGYTPQSPGYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1620
Score = 70.5 bits (171), Expect = 6e-11
Identities = 51/162 (31%), Positives = 73/162 (45%), Gaps = 4/162 (2%)
Frame = +2
Query: 32 SPAMPESERGYTPGREG--QRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYT--GPG 199
SP+ G++PG TPG Y SP A +P + SPAY PG
Sbjct: 1524 SPSAASDASGFSPGYSPAWSPTPGSPGSPGPASPYIPSPGGAMSPNYSPTSPAYEPRSPG 1583
Query: 200 GFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGG 379
G++P + +SP +P SP +P SP SP Y+ SP +
Sbjct: 1584 GYTP--QSPGYSPT---------------SPSYSPT---SPSYSPTSPSYSPTSPSYSPT 1623
Query: 380 LGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
GP + +Y+P SP+Y TSP YSP++P+ + +SP Y
Sbjct: 1624 SPSGPT--SPSYSPTSPSYSPTSPS--YSPTSPSYSPTSPNY 1661
Score = 67.4 bits (163), Expect = 5e-10
Identities = 52/153 (33%), Positives = 77/153 (50%), Gaps = 19/153 (12%)
Frame = +2
Query: 104 FDAAMTPTY-AYSPA--RARTPGGTAFSP-AYTGPGGFSPINATASFSPIMSSADAAGRA 271
++ TP Y A+SP+ TPG FSP A + GFSP + ++SP S + G A
Sbjct: 1497 WNTGATPAYGAWSPSVGSGMTPGAAGFSPSAASDASGFSP-GYSPAWSPTPGSPGSPGPA 1555
Query: 272 TP------GRMTPGRSPAG-RFTPRM----SPASPGYAAMSPRFGGGLGGGPAGGAGAYA 418
+P G M+P SP + PR +P SPGY+ SP + + + +Y+
Sbjct: 1556 SPYIPSPGGAMSPNYSPTSPAYEPRSPGGYTPQSPGYSPTSPSYSP-TSPSYSPTSPSYS 1614
Query: 419 PASPAYMATSPG----MGYSPSTPALAVSSPGY 505
P SP+Y TSP YSP++P+ + +SP Y
Sbjct: 1615 PTSPSYSPTSPSGPTSPSYSPTSPSYSPTSPSY 1647
[13][TOP]
>UniRef100_Q9AXN0 DNA-directed RNA polymerase n=1 Tax=Glaucosphaera vacuolata
RepID=Q9AXN0_9RHOD
Length = 1746
Score = 74.3 bits (181), Expect = 4e-12
Identities = 65/187 (34%), Positives = 83/187 (44%), Gaps = 20/187 (10%)
Frame = +2
Query: 5 AAASARIARSPAMPESERGYTPGR--EGQRTPGRAFDAAMTPTYAY-------SPARART 157
A AR R+ M + TP G TP A TP+Y Y SP A
Sbjct: 1482 AEEDARTPRAGLMSPAHGFDTPRAFDAGSMTPYPATPGQATPSYPYTPIGGQFSPFAASP 1541
Query: 158 PGGTAFSPAYTGPGGFSPINATAS-FSPIMSSADAAGRA--------TPGRM--TPGRSP 304
G AFSP T P SP AS F+ + S AG A +PG + +PG SP
Sbjct: 1542 YGDAAFSPTPTSPAYASPYGTAASPFNAMASPYSRAGNAFYSPRSPSSPGGVAASPGYSP 1601
Query: 305 AGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPAL 484
+P SP SP Y+ SP + + + AY+P SPAY TSP YSP++P
Sbjct: 1602 T---SPTYSPTSPSYSPTSPSY--------SPTSPAYSPTSPAYSPTSP--TYSPTSPTY 1648
Query: 485 AVSSPGY 505
+ +SP Y
Sbjct: 1649 SPTSPTY 1655
Score = 61.2 bits (147), Expect = 4e-08
Identities = 51/155 (32%), Positives = 66/155 (42%), Gaps = 31/155 (20%)
Frame = +2
Query: 134 YSPARARTPGGTAFSPAY---------TGPGGFSPINATAS-FSPIMSSADAAGRATPGR 283
YSP +PGG A SP Y T P +SP + + S SP S A T
Sbjct: 1582 YSPRSPSSPGGVAASPGYSPTSPTYSPTSPS-YSPTSPSYSPTSPAYSPTSPAYSPTSPT 1640
Query: 284 MTPGRSPAGRFTPRMSPASPGYA----AMSPRFGGGLGGGPAG-----GAGAYAPASPAY 436
+P +P SP SP Y+ AMSP GG+ P+ + Y+P+SP Y
Sbjct: 1641 YSPTSPTYSPTSPTYSPTSPMYSPSSPAMSPARAGGVSYSPSSPHYSPSSPQYSPSSPHY 1700
Query: 437 MATSPGMG------------YSPSTPALAVSSPGY 505
+SP YSPS+PA + SSP Y
Sbjct: 1701 SPSSPHYSPSSPQYSPSSPQYSPSSPAYSPSSPAY 1735
Score = 60.5 bits (145), Expect = 6e-08
Identities = 59/182 (32%), Positives = 86/182 (47%), Gaps = 14/182 (7%)
Frame = +2
Query: 2 DAAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTY-----AYSPAR-ARTPG 163
+A S R SP + GY+P +P + +P+Y AYSP A +P
Sbjct: 1579 NAFYSPRSPSSPGGVAASPGYSP-TSPTYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPT 1637
Query: 164 GTAFSPAYTGPGGFSPINATAS--------FSPIMSSADAAGRATPGRMTPGRSPAGRFT 319
+SP T P +SP + T S SP MS A A G + +P SP+ +
Sbjct: 1638 SPTYSP--TSPT-YSPTSPTYSPTSPMYSPSSPAMSPARAGG-VSYSPSSPHYSPS---S 1690
Query: 320 PRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSP 499
P+ SP+SP Y+ SP + + + Y+P+SP Y +SP YSPS+PA + SSP
Sbjct: 1691 PQYSPSSPHYSPSSPHY--------SPSSPQYSPSSPQYSPSSPA--YSPSSPAYSPSSP 1740
Query: 500 GY 505
+
Sbjct: 1741 AH 1742
[14][TOP]
>UniRef100_O77165 DNA-directed RNA polymerase (Fragment) n=1 Tax=Breviata anathema
RepID=O77165_9EUKA
Length = 1690
Score = 74.3 bits (181), Expect = 4e-12
Identities = 64/179 (35%), Positives = 84/179 (46%), Gaps = 13/179 (7%)
Frame = +2
Query: 8 AASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTY-----AYSPAR-ARTPGGT 169
A+ A SPA + Y+P A+ A +P Y AYSPA A +P
Sbjct: 1509 ASPAYSPASPAYSPASPAYSPASPAYSPASPAYSPA-SPAYSPASPAYSPASPAYSPASP 1567
Query: 170 AFSPAYTGPGGFSPINATAS--FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASP 343
A+SPA SP + AS +SP + A A +P SPA +P SPASP
Sbjct: 1568 AYSPASPAYSPASPAYSPASPAYSPASPAYSPASPAY-SPASPAYSPA---SPAYSPASP 1623
Query: 344 GYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMG-----YSPSTPALAVSSPGY 505
Y+ SP + PA + AY+PASPAY SP G YSP++PA + +SP Y
Sbjct: 1624 AYSPASPAYS------PA--SPAYSPASPAYSPASPAYGPASPAYSPASPAYSPASPAY 1674
Score = 73.6 bits (179), Expect = 7e-12
Identities = 63/174 (36%), Positives = 82/174 (47%), Gaps = 8/174 (4%)
Frame = +2
Query: 8 AASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTY-----AYSPAR-ARTPGGT 169
AA+ SPA + Y+P A+ A +P Y AYSPA A +P
Sbjct: 1502 AAAGYSPASPAYSPASPAYSPASPAYSPASPAYSPA-SPAYSPASPAYSPASPAYSPASP 1560
Query: 170 AFSPAYTGPGGFSPINATAS--FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASP 343
A+SPA SP + AS +SP + A A +P SPA +P SPASP
Sbjct: 1561 AYSPASPAYSPASPAYSPASPAYSPASPAYSPASPAY-SPASPAYSPA---SPAYSPASP 1616
Query: 344 GYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
Y+ SP + PA + AY+PASPAY SP YSP++PA +SP Y
Sbjct: 1617 AYSPASPAYS------PA--SPAYSPASPAYSPASPA--YSPASPAYGPASPAY 1660
Score = 73.2 bits (178), Expect = 9e-12
Identities = 63/174 (36%), Positives = 82/174 (47%), Gaps = 8/174 (4%)
Frame = +2
Query: 8 AASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTY-----AYSPAR-ARTPGGT 169
A+ A SPA + Y+P A+ A +P Y AYSPA A +P
Sbjct: 1523 ASPAYSPASPAYSPASPAYSPASPAYSPASPAYSPA-SPAYSPASPAYSPASPAYSPASP 1581
Query: 170 AFSPAYTGPGGFSPINATAS--FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASP 343
A+SPA SP + AS +SP + A A +P SPA +P SPASP
Sbjct: 1582 AYSPASPAYSPASPAYSPASPAYSPASPAYSPASPAY-SPASPAYSPA---SPAYSPASP 1637
Query: 344 GYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
Y+ SP + PA + AY PASPAY SP YSP++PA + +SP Y
Sbjct: 1638 AYSPASPAYS------PA--SPAYGPASPAYSPASPA--YSPASPAYSPASPAY 1681
Score = 70.5 bits (171), Expect = 6e-11
Identities = 62/172 (36%), Positives = 81/172 (47%), Gaps = 8/172 (4%)
Frame = +2
Query: 8 AASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTY-----AYSPAR-ARTPGGT 169
A+ A SPA + Y+P A+ A +P Y AYSPA A +P
Sbjct: 1530 ASPAYSPASPAYSPASPAYSPASPAYSPASPAYSPA-SPAYSPASPAYSPASPAYSPASP 1588
Query: 170 AFSPAYTGPGGFSPINATAS--FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASP 343
A+SPA SP + AS +SP + A A +P SPA +P SPASP
Sbjct: 1589 AYSPASPAYSPASPAYSPASPAYSPASPAYSPASPAY-SPASPAYSPA---SPAYSPASP 1644
Query: 344 GYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSP 499
Y+ SP + GPA + AY+PASPAY SP YSP++PA + P
Sbjct: 1645 AYSPASPAY------GPA--SPAYSPASPAYSPASP--AYSPASPAYDPAEP 1686
Score = 69.3 bits (168), Expect = 1e-10
Identities = 59/153 (38%), Positives = 75/153 (49%), Gaps = 4/153 (2%)
Frame = +2
Query: 59 GYTPGREGQRTPGRAFDAAMTPTY-AYSPAR-ARTPGGTAFSPAYTGPGGFSPINATAS- 229
GY P PG A +P AYSPA A +P A+SPA SP + AS
Sbjct: 1493 GYIP------VPGSPAAAGYSPASPAYSPASPAYSPASPAYSPASPAYSPASPAYSPASP 1546
Query: 230 -FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGA 406
+SP + A A +P SPA +P SPASP Y+ SP + PA +
Sbjct: 1547 AYSPASPAYSPASPAY-SPASPAYSPA---SPAYSPASPAYSPASPAYS------PA--S 1594
Query: 407 GAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
AY+PASPAY SP YSP++PA + +SP Y
Sbjct: 1595 PAYSPASPAYSPASPA--YSPASPAYSPASPAY 1625
Score = 62.0 bits (149), Expect = 2e-08
Identities = 41/111 (36%), Positives = 60/111 (54%), Gaps = 2/111 (1%)
Frame = +2
Query: 179 PAYTGPGGFSPINATASFSPIMSSADAAGRATPGRM--TPGRSPAGRFTPRMSPASPGYA 352
P+ GP G+ P+ + + + ++ A A+P +P SPA +P SPASP Y+
Sbjct: 1486 PSSPGPFGYIPVPGSPAAAGYSPASPAYSPASPAYSPASPAYSPA---SPAYSPASPAYS 1542
Query: 353 AMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
SP + PA + AY+PASPAY SP YSP++PA + +SP Y
Sbjct: 1543 PASPAYS------PA--SPAYSPASPAYSPASPA--YSPASPAYSPASPAY 1583
Score = 58.5 bits (140), Expect = 2e-07
Identities = 48/132 (36%), Positives = 64/132 (48%), Gaps = 3/132 (2%)
Frame = +2
Query: 119 TPTYAYSPARARTPG---GTAFSPAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMT 289
+P+ SP+ G G P + PG F I P+ S AAG + +
Sbjct: 1461 SPSVTMSPSGGFGMGMGMGMGDIPVPSSPGPFGYI-------PVPGSPAAAGYSPA---S 1510
Query: 290 PGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSP 469
P SPA +P SPASP Y+ SP + PA + AY+PASPAY SP YSP
Sbjct: 1511 PAYSPA---SPAYSPASPAYSPASPAYS------PA--SPAYSPASPAYSPASPA--YSP 1557
Query: 470 STPALAVSSPGY 505
++PA + +SP Y
Sbjct: 1558 ASPAYSPASPAY 1569
[15][TOP]
>UniRef100_UPI000186501C hypothetical protein BRAFLDRAFT_115025 n=1 Tax=Branchiostoma floridae
RepID=UPI000186501C
Length = 1956
Score = 73.9 bits (180), Expect = 5e-12
Identities = 51/134 (38%), Positives = 67/134 (50%), Gaps = 5/134 (3%)
Frame = +2
Query: 119 TPTY--AYSPA--RARTPGGTAFSP-AYTGPGGFSPINATASFSPIMSSADAAGRATPGR 283
TP Y A+SP TPG FSP A + G SP + ++SP S + G A+P
Sbjct: 1523 TPAYGGAWSPGLGSGMTPGAAGFSPSAASDASGMSPAGYSPAWSPTPGSPGSPGPASPYI 1582
Query: 284 MTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGY 463
+PG G +P SPASP Y SP GG + Y+P SP+Y TSP Y
Sbjct: 1583 PSPG----GPMSPSYSPASPAYMPRSP-------GGMTPQSPGYSPTSPSYSPTSP--SY 1629
Query: 464 SPSTPALAVSSPGY 505
SP++P + +SP Y
Sbjct: 1630 SPASPNYSPTSPSY 1643
Score = 72.0 bits (175), Expect = 2e-11
Identities = 55/154 (35%), Positives = 75/154 (48%), Gaps = 5/154 (3%)
Frame = +2
Query: 59 GYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAF----SPAYTGPGG-FSPINAT 223
G TPG G +P A DA+ YSPA + TPG SP PGG SP
Sbjct: 1537 GMTPGAAGF-SPSAASDASGMSPAGYSPAWSPTPGSPGSPGPASPYIPSPGGPMSP---- 1591
Query: 224 ASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGG 403
S+SP ++ A +PG MTP +P SP SP Y+ SP + +
Sbjct: 1592 -SYSP---ASPAYMPRSPGGMTPQSPGYSPTSPSYSPTSPSYSPASPNY--------SPT 1639
Query: 404 AGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
+ +Y+P SP+Y TSP YSP++P+ + +SP Y
Sbjct: 1640 SPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1671
Score = 55.8 bits (133), Expect = 2e-06
Identities = 46/168 (27%), Positives = 69/168 (41%), Gaps = 10/168 (5%)
Frame = +2
Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGG-FS 208
SP+ + Y+P ++ + +P+Y+ S +P T SP Y+ +S
Sbjct: 1773 SPSYSPTSPSYSPSSPNYSPQSPSYSPS-SPSYSPSSPNPSSPKYTPTSPKYSPSSPKYS 1831
Query: 209 PINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLG 385
P + S SP S + A +P +P+ SPASP Y SP++
Sbjct: 1832 PSSPKYSPTSPTYSPSSAKYSPASPSYSPSTPKYTPTSPKYSPASPTYTPTSPKY-SPTS 1890
Query: 386 GGPAGGAGAYAPASPAYMATSP--------GMGYSPSTPALAVSSPGY 505
Y+P SP Y TSP G YSP+TP + +SP Y
Sbjct: 1891 PSYTPDTPKYSPTSPKYSPTSPTYSPTSPKGSTYSPTTPGYSPASPTY 1938
[16][TOP]
>UniRef100_C3ZES3 DNA-directed RNA polymerase n=1 Tax=Branchiostoma floridae
RepID=C3ZES3_BRAFL
Length = 1934
Score = 73.9 bits (180), Expect = 5e-12
Identities = 51/134 (38%), Positives = 67/134 (50%), Gaps = 5/134 (3%)
Frame = +2
Query: 119 TPTY--AYSPA--RARTPGGTAFSP-AYTGPGGFSPINATASFSPIMSSADAAGRATPGR 283
TP Y A+SP TPG FSP A + G SP + ++SP S + G A+P
Sbjct: 1523 TPAYGGAWSPGLGSGMTPGAAGFSPSAASDASGMSPAGYSPAWSPTPGSPGSPGPASPYI 1582
Query: 284 MTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGY 463
+PG G +P SPASP Y SP GG + Y+P SP+Y TSP Y
Sbjct: 1583 PSPG----GPMSPSYSPASPAYMPRSP-------GGMTPQSPGYSPTSPSYSPTSP--SY 1629
Query: 464 SPSTPALAVSSPGY 505
SP++P + +SP Y
Sbjct: 1630 SPASPNYSPTSPSY 1643
Score = 72.0 bits (175), Expect = 2e-11
Identities = 55/154 (35%), Positives = 75/154 (48%), Gaps = 5/154 (3%)
Frame = +2
Query: 59 GYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAF----SPAYTGPGG-FSPINAT 223
G TPG G +P A DA+ YSPA + TPG SP PGG SP
Sbjct: 1537 GMTPGAAGF-SPSAASDASGMSPAGYSPAWSPTPGSPGSPGPASPYIPSPGGPMSP---- 1591
Query: 224 ASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGG 403
S+SP ++ A +PG MTP +P SP SP Y+ SP + +
Sbjct: 1592 -SYSP---ASPAYMPRSPGGMTPQSPGYSPTSPSYSPTSPSYSPASPNY--------SPT 1639
Query: 404 AGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
+ +Y+P SP+Y TSP YSP++P+ + +SP Y
Sbjct: 1640 SPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1671
Score = 67.0 bits (162), Expect = 7e-10
Identities = 56/175 (32%), Positives = 81/175 (46%), Gaps = 8/175 (4%)
Frame = +2
Query: 5 AAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPA 184
AA + A S A S GY+P TPG Y SP +P + SPA
Sbjct: 1542 AAGFSPSAASDASGMSPAGYSPA--WSPTPGSPGSPGPASPYIPSPGGPMSPSYSPASPA 1599
Query: 185 YT--GPGGFSPIN-----ATASFSPIMSS-ADAAGRATPGRMTPGRSPAGRFTPRMSPAS 340
Y PGG +P + + S+SP S + A+ +P +P SP +P SP S
Sbjct: 1600 YMPRSPGGMTPQSPGYSPTSPSYSPTSPSYSPASPNYSP--TSPSYSPT---SPSYSPTS 1654
Query: 341 PGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
P Y+ SP + + + +Y+P SP+Y TSP YSP++P+ + +SP Y
Sbjct: 1655 PSYSPTSPSY--------SPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1699
Score = 63.5 bits (153), Expect = 7e-09
Identities = 58/177 (32%), Positives = 82/177 (46%), Gaps = 10/177 (5%)
Frame = +2
Query: 5 AAASARIARSPAMPESERGYTPGREGQRTPGRAF----DAAMTPTYA-YSPA-RARTPGG 166
+AAS SPA TPG G P + M+P+Y+ SPA R+PGG
Sbjct: 1548 SAASDASGMSPAGYSPAWSPTPGSPGSPGPASPYIPSPGGPMSPSYSPASPAYMPRSPGG 1607
Query: 167 -TAFSPAY--TGPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSP 334
T SP Y T P +SP + + S SP S + T +P +P SP
Sbjct: 1608 MTPQSPGYSPTSPS-YSPTSPSYSPASPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1666
Query: 335 ASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
SP Y+ SP + + + +Y+P SP+Y TSP YSP++P+ + +SP Y
Sbjct: 1667 TSPSYSPTSPSYSP-TSPSYSPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1720
[17][TOP]
>UniRef100_Q1E2G9 DNA-directed RNA polymerase n=1 Tax=Coccidioides immitis
RepID=Q1E2G9_COCIM
Length = 1750
Score = 73.9 bits (180), Expect = 5e-12
Identities = 63/186 (33%), Positives = 92/186 (49%), Gaps = 18/186 (9%)
Frame = +2
Query: 2 DAAASARIARSP-------AMPESERGYTP-GREGQRTPGRAFDAAMTPTYA-YSPARAR 154
D AA+ + SP + P+ + ++P G+ G TP F P + +SPA AR
Sbjct: 1503 DGAATQYDSGSPMQENMYISSPDPDSQFSPIGQTGSETPA-GFTEYQPPGFGGFSPAGAR 1561
Query: 155 TPGG-TAFSPAYTGPG--GFSPINATASFSPIMSSADAAGRATPGRMT-PGRSPAGRFTP 322
+PGG + SP T P G+SP + + SP MS +P MT PG SPA +P
Sbjct: 1562 SPGGYSPTSPFNTSPTSPGYSPSSGYSPTSPGMSIT------SPRYMTSPGFSPA---SP 1612
Query: 323 RMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMG-----YSPSTPALA 487
+P SP Y+ SP G G + + +Y+P SP + TSP +SP++PA +
Sbjct: 1613 TFAPTSPAYSPTSP----GYGQAQSPTSPSYSPTSPGFSPTSPSYSPTSPSFSPASPAFS 1668
Query: 488 VSSPGY 505
+SP Y
Sbjct: 1669 PTSPSY 1674
Score = 60.5 bits (145), Expect = 6e-08
Identities = 53/171 (30%), Positives = 73/171 (42%), Gaps = 9/171 (5%)
Frame = +2
Query: 14 SARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTY-AYSPARARTPGGTAFSPAY- 187
S R SP + + P + A +PT +YSP +PG + SP+Y
Sbjct: 1598 SPRYMTSPGFSPASPTFAPTSPAYSPTSPGYGQAQSPTSPSYSPT---SPGFSPTSPSYS 1654
Query: 188 -TGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSP 364
T P FSP A+ +FSP S A G SP +P+ +P SPG++ SP
Sbjct: 1655 PTSPS-FSP--ASPAFSPTSPSYSPTSPALGGATGRHLSPTSPTSPKYTPTSPGWSPTSP 1711
Query: 365 RFGGGLGGGPAGGAGAYAPASPAYMA--TSPG----MGYSPSTPALAVSSP 499
AY+P SP + TSPG GYSP++P +SP
Sbjct: 1712 E--------------AYSPTSPNFAGSPTSPGGPTSPGYSPTSPTFNPTSP 1748
[18][TOP]
>UniRef100_C5PAJ4 DNA-directed RNA polymerase n=1 Tax=Coccidioides posadasii C735 delta
SOWgp RepID=C5PAJ4_COCP7
Length = 1746
Score = 73.9 bits (180), Expect = 5e-12
Identities = 63/186 (33%), Positives = 92/186 (49%), Gaps = 18/186 (9%)
Frame = +2
Query: 2 DAAASARIARSP-------AMPESERGYTP-GREGQRTPGRAFDAAMTPTYA-YSPARAR 154
D AA+ + SP + P+ + ++P G+ G TP F P + +SPA AR
Sbjct: 1503 DGAATQYDSGSPMQENMYISSPDPDSQFSPIGQTGSETPA-GFTEYQPPGFGGFSPAGAR 1561
Query: 155 TPGG-TAFSPAYTGPG--GFSPINATASFSPIMSSADAAGRATPGRMT-PGRSPAGRFTP 322
+PGG + SP T P G+SP + + SP MS +P MT PG SPA +P
Sbjct: 1562 SPGGYSPTSPFNTSPTSPGYSPSSGYSPTSPGMSIT------SPRYMTSPGFSPA---SP 1612
Query: 323 RMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMG-----YSPSTPALA 487
+P SP Y+ SP G G + + +Y+P SP + TSP +SP++PA +
Sbjct: 1613 TFAPTSPAYSPTSP----GYGQAQSPTSPSYSPTSPGFSPTSPSYSPTSPSFSPASPAFS 1668
Query: 488 VSSPGY 505
+SP Y
Sbjct: 1669 PTSPSY 1674
Score = 57.4 bits (137), Expect = 5e-07
Identities = 51/164 (31%), Positives = 70/164 (42%), Gaps = 9/164 (5%)
Frame = +2
Query: 14 SARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTY-AYSPARARTPGGTAFSPAY- 187
S R SP + + P + A +PT +YSP +PG + SP+Y
Sbjct: 1598 SPRYMTSPGFSPASPTFAPTSPAYSPTSPGYGQAQSPTSPSYSPT---SPGFSPTSPSYS 1654
Query: 188 -TGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSP 364
T P FSP A+ +FSP S A G SP +P+ +P SPG++ SP
Sbjct: 1655 PTSPS-FSP--ASPAFSPTSPSYSPTSPALGGATGRHLSPTSPTSPKYTPTSPGWSPTSP 1711
Query: 365 RFGGGLGGGPAGGAGAYAPASPAYMA--TSPG----MGYSPSTP 478
AY+P SP + TSPG GYSP++P
Sbjct: 1712 E--------------AYSPTSPNFAGSPTSPGGPTSPGYSPTSP 1741
[19][TOP]
>UniRef100_UPI0000E48671 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
(RPB1) isoform 3 n=1 Tax=Strongylocentrotus purpuratus
RepID=UPI0000E48671
Length = 1921
Score = 73.6 bits (179), Expect = 7e-12
Identities = 57/157 (36%), Positives = 79/157 (50%), Gaps = 3/157 (1%)
Frame = +2
Query: 44 PESERGYTPGREGQRTPGRAFDAAMTPTY--AYSPARARTPGGTAFSPAYTGPGG-FSPI 214
P G TPG G +P + +P Y A+SP + ++PG A SP P G SP
Sbjct: 1533 PMMGSGMTPGGPGF-SPANSESTGFSPAYSPAWSP-QPQSPGSPANSPYIPSPAGPMSP- 1589
Query: 215 NATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGP 394
S+SP S A ATP +PG SP +P SP SPGY+ SP +
Sbjct: 1590 ----SYSPASPSYLPASPATP--QSPGYSPT---SPSYSPTSPGYSPASPSYSP-TSPSY 1639
Query: 395 AGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
+ + +Y+P SP+Y TSP YSP++P+ + +SP Y
Sbjct: 1640 SPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1674
Score = 71.6 bits (174), Expect = 3e-11
Identities = 54/164 (32%), Positives = 72/164 (43%), Gaps = 26/164 (15%)
Frame = +2
Query: 92 PGRAFDAAMTPTYAYSP---------------------ARARTPGGTAFSPAYTGPGGFS 208
PG F A +P+ + SP TPGG FSPA + GFS
Sbjct: 1498 PGMLFGAMGSPSQSMSPQMTPWNQGATPMHGASWSPMMGSGMTPGGPGFSPANSESTGFS 1557
Query: 209 PINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGG 388
P ++SP S + +P SPAG +P SPASP Y SP G
Sbjct: 1558 P-----AYSPAWSPQPQSP-GSPANSPYIPSPAGPMSPSYSPASPSYLPASPATPQSPGY 1611
Query: 389 GPAGGAGA-----YAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
P + + Y+PASP+Y TSP YSP++P+ + +SP Y
Sbjct: 1612 SPTSPSYSPTSPGYSPASPSYSPTSP--SYSPTSPSYSPTSPSY 1653
Score = 58.5 bits (140), Expect = 2e-07
Identities = 48/166 (28%), Positives = 78/166 (46%), Gaps = 8/166 (4%)
Frame = +2
Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARAR-TPGGTAFSPAYTG 193
SP+ S Y+P ++ + +P+Y+ YSP+ + +P ++SP T
Sbjct: 1755 SPSYSPSSPKYSPTSPSYSPTSPSY-SPQSPSYSPGSPSYSPSSPKYSPTSPSYSP--TS 1811
Query: 194 PGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRF 370
P +SP + S SP S A + T + +P +P SP SP Y+ SP +
Sbjct: 1812 PS-YSPTSPNFSPSSPTYSPASPSYSPTSPKYSPSSPKYSPTSPTYSPTSPKYSPASPTY 1870
Query: 371 GGGLGGGPAGGAGAYAPASPAYMATSP-GMGYSPSTPALAVSSPGY 505
+ + Y+P+SP Y TSP G YSP++P+ + +SP Y
Sbjct: 1871 --------SPTSPKYSPSSPTYSPTSPKGSTYSPTSPSYSPTSPSY 1908
Score = 54.3 bits (129), Expect = 4e-06
Identities = 47/172 (27%), Positives = 74/172 (43%), Gaps = 14/172 (8%)
Frame = +2
Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY--T 190
SP+ + Y+P ++ +P+Y+ YSP +P + SP+Y T
Sbjct: 1671 SPSYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPSYSPT---SPSYSPTSPSYSPT 1726
Query: 191 GPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPR 367
P +SP + + S SP S + T +P +P SP SP Y+ SP
Sbjct: 1727 SPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPKYSPTSPSYSPTSPSYSPQSPS 1785
Query: 368 FGGGLGGGPAGG------AGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
+ G + +Y+P SP+Y TSP +SPS+P + +SP Y
Sbjct: 1786 YSPGSPSYSPSSPKYSPTSPSYSPTSPSYSPTSP--NFSPSSPTYSPASPSY 1835
Score = 53.9 bits (128), Expect = 6e-06
Identities = 42/149 (28%), Positives = 65/149 (43%), Gaps = 6/149 (4%)
Frame = +2
Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARAR-TPGGTAFSPAYTG 193
SP+ Y+PG +P + +P+Y+ YSP +P +SPA
Sbjct: 1776 SPSYSPQSPSYSPGSPSY-SPSSPKYSPTSPSYSPTSPSYSPTSPNFSPSSPTYSPASPS 1834
Query: 194 PGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFG 373
SP + +S P S T + +P +P+ SP+SP Y+ SP+
Sbjct: 1835 YSPTSPKYSPSS--PKYSPTSPTYSPTSPKYSPASPTYSPTSPKYSPSSPTYSPTSPK-- 1890
Query: 374 GGLGGGPAGGAGAYAPASPAYMATSPGMG 460
G + + +Y+P SP+Y TSPGMG
Sbjct: 1891 ---GSTYSPTSPSYSPTSPSYSPTSPGMG 1916
Score = 53.5 bits (127), Expect = 8e-06
Identities = 49/163 (30%), Positives = 76/163 (46%), Gaps = 6/163 (3%)
Frame = +2
Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAY--TGPGGF 205
SP+ + Y+P + +PG + +P Y SP +P + SP+Y T P F
Sbjct: 1769 SPSYSPTSPSYSP-QSPSYSPGSPSYSPSSPKY--SPT---SPSYSPTSPSYSPTSPN-F 1821
Query: 206 SPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGL 382
SP + T S SP S + + +P +P+ SPASP Y+ SP++
Sbjct: 1822 SPSSPTYSPASPSYSPTSPKYSPSSPKYSPTSPTYSPTSPKYSPASPTYSPTSPKY---- 1877
Query: 383 GGGPAGGAGAYAPASP---AYMATSPGMGYSPSTPALAVSSPG 502
+ + Y+P SP Y TSP YSP++P+ + +SPG
Sbjct: 1878 ----SPSSPTYSPTSPKGSTYSPTSPS--YSPTSPSYSPTSPG 1914
[20][TOP]
>UniRef100_P46804 Spidroin-2 (Fragment) n=1 Tax=Nephila clavipes RepID=SPD2_NEPCL
Length = 627
Score = 73.6 bits (179), Expect = 7e-12
Identities = 55/166 (33%), Positives = 72/166 (43%), Gaps = 1/166 (0%)
Frame = +2
Query: 8 AASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAY 187
+ASA A + + GY PG++G PG A AA A A PGG + P
Sbjct: 351 SASAAAAAAGPGQQGPGGYGPGQQGPSGPGSASAAAA--------AAAAGPGG--YGPGQ 400
Query: 188 TGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTP-RMSPASPGYAAMSP 364
GPGG++P S S+A AA A PG PG+ G + P + P+ PG AA +
Sbjct: 401 QGPGGYAPGQQGPSGPGSASAAAAAAAAGPGGYGPGQQGPGGYAPGQQGPSGPGSAAAAA 460
Query: 365 RFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPG 502
G GG G P A A++ GY P+ A PG
Sbjct: 461 AAAAGPGGYGPAQQGPSGPGIAASAASAGPGGYGPAQQGPAGYGPG 506
Score = 62.0 bits (149), Expect = 2e-08
Identities = 55/178 (30%), Positives = 74/178 (41%), Gaps = 13/178 (7%)
Frame = +2
Query: 8 AASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAY 187
+A+A A P + GY PG++G PG A AA A A PGG + P
Sbjct: 245 SAAAAAAAGPGQ-QGPGGYGPGQQGPSGPGSAAAAA---------AAAAGPGG--YGPGQ 292
Query: 188 TGPGGFSPINATASFSPIMSSADAAG------------RATPGRMTPGRSPAGRFTPRMS 331
GPGG+ P S + ++A AAG + PG PG+ G + P +
Sbjct: 293 QGPGGYGPGQQGPSGAGSAAAAAAAGPGQQGLGGYGPGQQGPGGYGPGQQGPGGYGPGSA 352
Query: 332 PASPGYAAMSPRFGGGLGGGPAGGAG-AYAPASPAYMATSPGMGYSPSTPALAVSSPG 502
A+ A + GG G G G +G A A+ A A PG GY P +PG
Sbjct: 353 SAAAAAAGPGQQGPGGYGPGQQGPSGPGSASAAAAAAAAGPG-GYGPGQQGPGGYAPG 409
Score = 60.1 bits (144), Expect = 8e-08
Identities = 61/190 (32%), Positives = 74/190 (38%), Gaps = 24/190 (12%)
Frame = +2
Query: 5 AAASARIARSPAMP---------ESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARART 157
AAA+A A P + GY PG++G PG A AA A S +
Sbjct: 164 AAAAAAAASGPGQQGPGGYGPGQQGPGGYGPGQQGPSGPGSAAAAAA----AASGPGQQG 219
Query: 158 PGGTAFSPAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPA 337
PGG + P GPGG+ P S SA AA A PG+ PG G + P+
Sbjct: 220 PGG--YGPGQQGPGGYGPGQQGLSGP---GSAAAAAAAGPGQQGPGGYGPG----QQGPS 270
Query: 338 SPGYAAMSPRFGGGLGG-GPA-GGAGAYAP---------ASPAYMATSPGM----GYSPS 472
PG AA + G GG GP G G Y P ++ A A PG GY P
Sbjct: 271 GPGSAAAAAAAAAGPGGYGPGQQGPGGYGPGQQGPSGAGSAAAAAAAGPGQQGLGGYGPG 330
Query: 473 TPALAVSSPG 502
PG
Sbjct: 331 QQGPGGYGPG 340
Score = 59.7 bits (143), Expect = 1e-07
Identities = 56/195 (28%), Positives = 79/195 (40%), Gaps = 29/195 (14%)
Frame = +2
Query: 5 AAASARIARSPAMPESERGYTPGRE-----------------GQRTPGRAFDAAMTPTYA 133
AAA++ A + + + GY PG++ GQ+ P AA A
Sbjct: 112 AAAASAAASAESGQQGPGGYGPGQQGPGGYGPGQQGPGGYGPGQQGPSGPGSAAAAAAAA 171
Query: 134 YSPARARTPGGTAFSPAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPG------ 295
P + + PGG + P GPGG+ P S P ++A AA + PG+ PG
Sbjct: 172 SGPGQ-QGPGG--YGPGQQGPGGYGPGQQGPS-GPGSAAAAAAAASGPGQQGPGGYGPGQ 227
Query: 296 RSPAGRFTPRMSPASPGYAAMSPRFG------GGLGGGPAGGAGAYAPASPAYMATSPGM 457
+ P G + + PG AA + G GG G G G +G + A+ A A PG
Sbjct: 228 QGPGGYGPGQQGLSGPGSAAAAAAAGPGQQGPGGYGPGQQGPSGPGSAAAAAAAAAGPG- 286
Query: 458 GYSPSTPALAVSSPG 502
GY P PG
Sbjct: 287 GYGPGQQGPGGYGPG 301
Score = 57.0 bits (136), Expect = 7e-07
Identities = 47/162 (29%), Positives = 65/162 (40%), Gaps = 14/162 (8%)
Frame = +2
Query: 59 GYTPGREGQRTPGRAFDAAMTPTY--------AYSPARARTPGGTAFSPAYTGPGGFSPI 214
GY G++G PG A A+ + Y P + + PGG + P GPGG+ P
Sbjct: 98 GYGQGQQGPSGPGSAAAASAAASAESGQQGPGGYGPGQ-QGPGG--YGPGQQGPGGYGPG 154
Query: 215 NATASFSPIMSSADAAGRATPGRMTPG------RSPAGRFTPRMSPASPGYAAMSPRFGG 376
S P ++A AA + PG+ PG + P G + P+ PG AA +
Sbjct: 155 QQGPS-GPGSAAAAAAAASGPGQQGPGGYGPGQQGPGGYGPGQQGPSGPGSAAAAAAAAS 213
Query: 377 GLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPG 502
G G GG G Y G+ S A A + PG
Sbjct: 214 GPGQQGPGGYGPGQQGPGGYGPGQQGLSGPGSAAAAAAAGPG 255
Score = 57.0 bits (136), Expect = 7e-07
Identities = 67/215 (31%), Positives = 88/215 (40%), Gaps = 51/215 (23%)
Frame = +2
Query: 5 AAASARIARSPAM----PESERGYTPGREGQRTPGRAFDAAMTPTY-----AYSPARART 157
AAA+A A P + GY PG++G G A AA Y P + +
Sbjct: 275 AAAAAAAAAGPGGYGPGQQGPGGYGPGQQGPSGAGSAAAAAAAGPGQQGLGGYGPGQ-QG 333
Query: 158 PGGTAFSPAYTGPGGFSPINATAS-------------FSP---------IMSSADAAGRA 271
PGG + P GPGG+ P +A+A+ + P S+A AA A
Sbjct: 334 PGG--YGPGQQGPGGYGPGSASAAAAAAGPGQQGPGGYGPGQQGPSGPGSASAAAAAAAA 391
Query: 272 TPGRMTPGRSPAGRFTP-RMSPASPGYA-AMSPRFGGGLGG-GPA-GGAGAYAP------ 421
PG PG+ G + P + P+ PG A A + G GG GP G G YAP
Sbjct: 392 GPGGYGPGQQGPGGYAPGQQGPSGPGSASAAAAAAAAGPGGYGPGQQGPGGYAPGQQGPS 451
Query: 422 -----ASPAYMATSPGMGY-----SPSTPALAVSS 496
A+ A A PG GY PS P +A S+
Sbjct: 452 GPGSAAAAAAAAAGPG-GYGPAQQGPSGPGIAASA 485
Score = 53.5 bits (127), Expect = 8e-06
Identities = 53/174 (30%), Positives = 63/174 (36%), Gaps = 26/174 (14%)
Frame = +2
Query: 59 GYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGFSPIN------A 220
GY PG++G PG A AA A A PGG + P GPGG+ P
Sbjct: 13 GYGPGQQGPSGPGSAAAAAA--------AAAAGPGG--YGPGQQGPGGYGPGQQGPGRYG 62
Query: 221 TASFSPIMSSADAAGRATPGRMTPG------RSPAGRFTPRMSPASPGYAAMSPRFGGGL 382
P + AA A G+ PG + P G + P+ PG AA +
Sbjct: 63 PGQQGPSGPGSAAAAAAGSGQQGPGGYGPRQQGPGGYGQGQQGPSGPGSAAAASAAASAE 122
Query: 383 GG--GPAG------GAGAYAPASPAYMATSPGMGYSPSTP------ALAVSSPG 502
G GP G G G Y P PG PS P A A S PG
Sbjct: 123 SGQQGPGGYGPGQQGPGGYGPGQQGPGGYGPGQ-QGPSGPGSAAAAAAAASGPG 175
[21][TOP]
>UniRef100_UPI0000546D90 PREDICTED: im:7136071 isoform 1 n=1 Tax=Danio rerio
RepID=UPI0000546D90
Length = 1972
Score = 73.2 bits (178), Expect = 9e-12
Identities = 52/140 (37%), Positives = 71/140 (50%), Gaps = 6/140 (4%)
Frame = +2
Query: 104 FDAAMTPTY-AYSPA--RARTPGGTAFSP-AYTGPGGFSPINATASFSPIMSSADAAGRA 271
++ TP Y A+SP+ TPG FSP A + GFSP + ++SP S + G A
Sbjct: 1517 WNTGATPAYGAWSPSVGSGMTPGAAGFSPSAASDASGFSP-GYSPAWSPTPGSPGSPGPA 1575
Query: 272 TPGRMTPGRSPA--GRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMAT 445
+P +PG G +P SP SP Y SP GGG + Y+P SP+Y T
Sbjct: 1576 SPYIPSPGYITLHFGALSPNYSPTSPAYEPRSP------GGGYTPQSPGYSPTSPSYSPT 1629
Query: 446 SPGMGYSPSTPALAVSSPGY 505
SP YSP++P + +SP Y
Sbjct: 1630 SP--SYSPTSPNYSPTSPSY 1647
Score = 65.9 bits (159), Expect = 1e-09
Identities = 56/152 (36%), Positives = 71/152 (46%), Gaps = 6/152 (3%)
Frame = +2
Query: 68 PGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGFSP------INATAS 229
PG G F +A +P SPA TP T +PAY G +SP A
Sbjct: 1488 PGISVAGPTGMFFGSAPSPMSGMSPAM--TPWNTGATPAY---GAWSPSVGSGMTPGAAG 1542
Query: 230 FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAG 409
FSP +S DA+G +PG SPA TP SP SPG A+ G + +
Sbjct: 1543 FSPSAAS-DASG------FSPGYSPAWSPTPG-SPGSPGPASPYIPSPGYITLHFGALSP 1594
Query: 410 AYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
Y+P SPAY SPG GY+P +P + +SP Y
Sbjct: 1595 NYSPTSPAYEPRSPGGGYTPQSPGYSPTSPSY 1626
Score = 60.1 bits (144), Expect = 8e-08
Identities = 47/151 (31%), Positives = 70/151 (46%), Gaps = 4/151 (2%)
Frame = +2
Query: 65 TPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAY---TGPGGFSPINATAS-F 232
TPG G +PG A +P Y A +P + SPAY + GG++P + S
Sbjct: 1565 TPGSPG--SPGPASPYIPSPGYITLHFGALSPNYSPTSPAYEPRSPGGGYTPQSPGYSPT 1622
Query: 233 SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 412
SP S + T +P +P SP SP Y+ SP + + + +
Sbjct: 1623 SPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSY--------SPTSPS 1674
Query: 413 YAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
Y+P SP+Y TSP YSP++P+ + +SP Y
Sbjct: 1675 YSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1703
Score = 53.5 bits (127), Expect = 8e-06
Identities = 49/165 (29%), Positives = 78/165 (47%), Gaps = 7/165 (4%)
Frame = +2
Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAYTGP 196
SP+ + Y+P ++ +P+Y+ YSP +P + SP YT
Sbjct: 1707 SPSYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPSYSPT---SPSYSPTSPNYTPT 1762
Query: 197 G-GFSPINATASFSPIMSS-ADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRF 370
+SP + S+SP S + + TP +P SP +P SP SP Y+ SPR+
Sbjct: 1763 SPSYSP--TSPSYSPTSPSYSPTSPNYTP--TSPNYSPT---SPSYSPTSPSYSPSSPRY 1815
Query: 371 GGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
+ +Y+P+SP+Y TSP Y+P++P+ + SSP Y
Sbjct: 1816 -TPQSPTYTPSSPSYSPSSPSYSPTSP--KYTPTSPSYSPSSPEY 1857
[22][TOP]
>UniRef100_Q30BD9 DNA-directed RNA polymerase n=1 Tax=Glaucocystis nostochinearum
RepID=Q30BD9_9EUKA
Length = 1852
Score = 72.8 bits (177), Expect = 1e-11
Identities = 67/192 (34%), Positives = 94/192 (48%), Gaps = 24/192 (12%)
Frame = +2
Query: 2 DAAASARIARSPAMPES---ERGYTPGRE--GQRTPGRAFDAAMTPTYA-----YSPARA 151
D A + A SP + S RGY+P R+PG FD A +P+Y+ YS A
Sbjct: 1515 DGATFSPYAESPFVDGSFSPHRGYSPSSPPYSPRSPG--FDYAASPSYSPASPSYSAASP 1572
Query: 152 R----TPGGTAFSPAY--TGPGGFSPINATAS-FSPIMSSADAAGRATP---GRMTPGRS 301
R +PG +A SP+Y T P +SP + + S SP S A T +PG S
Sbjct: 1573 RYSPTSPGYSASSPSYSPTSPS-YSPTSPSYSPTSPSYSPTSPAYSPTSPSYSPTSPGYS 1631
Query: 302 PAGRF----TPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSP 469
P +PR SP SP Y+ SP + G + + +Y+P SP+Y TSP YSP
Sbjct: 1632 PTSPSYSPTSPRYSPTSPSYSPTSPSY-SPTSPGYSPTSPSYSPTSPSYSPTSP--SYSP 1688
Query: 470 STPALAVSSPGY 505
++P+ + +SP Y
Sbjct: 1689 TSPSYSPTSPSY 1700
Score = 71.6 bits (174), Expect = 3e-11
Identities = 52/148 (35%), Positives = 71/148 (47%), Gaps = 7/148 (4%)
Frame = +2
Query: 83 QRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGP---GGFSPIN----ATASFSPI 241
Q TP +D MTP SP G FSP P G FSP ++ +SP
Sbjct: 1492 QMTP---YDTHMTPALQQSPGGTPFLDGATFSPYAESPFVDGSFSPHRGYSPSSPPYSPR 1548
Query: 242 MSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAP 421
D A + +P S A +PR SP SPGY+A SP + + + +Y+P
Sbjct: 1549 SPGFDYAASPSYSPASPSYSAA---SPRYSPTSPGYSASSPSY-SPTSPSYSPTSPSYSP 1604
Query: 422 ASPAYMATSPGMGYSPSTPALAVSSPGY 505
SP+Y TSP YSP++P+ + +SPGY
Sbjct: 1605 TSPSYSPTSP--AYSPTSPSYSPTSPGY 1630
Score = 54.3 bits (129), Expect = 4e-06
Identities = 51/167 (30%), Positives = 75/167 (44%), Gaps = 9/167 (5%)
Frame = +2
Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY--T 190
SP+ + Y+P ++ +P+Y+ YSP +P + SP+Y T
Sbjct: 1669 SPSYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPSYSPT---SPSCSPTSPSYSPT 1724
Query: 191 GPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRF 370
P +SP + S+SP S A T +P SP+ +P SP+SP Y+ SP +
Sbjct: 1725 SPS-YSP--TSPSYSPSSPSCSPAS-PTYSPSSPSYSPS---SPSYSPSSPSYSPSSPSY 1777
Query: 371 GGGLGGGPAGGAGAYAPASPAYM--ATSPGMGYSPSTPALAVSSPGY 505
A Y+P SP + A SP YSP++PA SSP Y
Sbjct: 1778 SPSSPQYTPASAN-YSPPSPLHSSPAYSPTSQYSPTSPAYGASSPAY 1823
[23][TOP]
>UniRef100_UPI0000F2BF12 PREDICTED: similar to RNA polymerase II isoform 1 n=1 Tax=Monodelphis
domestica RepID=UPI0000F2BF12
Length = 1970
Score = 72.4 bits (176), Expect = 2e-11
Identities = 54/154 (35%), Positives = 76/154 (49%), Gaps = 5/154 (3%)
Frame = +2
Query: 59 GYTPGREGQRTPGRA-FDAAMTPTY-AYSPA--RARTPGGTAFSP-AYTGPGGFSPINAT 223
G P G +P ++ TP Y A+SP+ TPG FSP A + GFSP +
Sbjct: 1504 GSAPSPMGGMSPAMTPWNQGATPAYGAWSPSVGSGMTPGAAGFSPSAASDASGFSP-GYS 1562
Query: 224 ASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGG 403
++SP S + G ++P +PG G +P SP SP Y SP GG
Sbjct: 1563 PAWSPTPGSPGSPGPSSPYIPSPG----GAMSPSYSPTSPAYEPRSP-------GGYTPQ 1611
Query: 404 AGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
+ +Y+P SP+Y TSP YSP++P + +SP Y
Sbjct: 1612 SPSYSPTSPSYSPTSP--SYSPTSPNYSPTSPSY 1643
Score = 70.9 bits (172), Expect = 5e-11
Identities = 50/163 (30%), Positives = 75/163 (46%), Gaps = 5/163 (3%)
Frame = +2
Query: 32 SPAMPESERGYTPGREG--QRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYT--GPG 199
SP+ G++PG TPG + Y SP A +P + SPAY PG
Sbjct: 1547 SPSAASDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPG 1606
Query: 200 GFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGG 376
G++P + + S SP S + T +P +P SP SP Y+ SP +
Sbjct: 1607 GYTPQSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-- 1664
Query: 377 GLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
+ + +Y+P SP+Y TSP YSP++P+ + +SP Y
Sbjct: 1665 ------SPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1699
Score = 61.6 bits (148), Expect = 3e-08
Identities = 50/168 (29%), Positives = 77/168 (45%), Gaps = 8/168 (4%)
Frame = +2
Query: 26 ARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY- 187
A SP+ + Y P G TP + +P+Y+ YSP +P + SP+Y
Sbjct: 1588 AMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPT---SPNYSPTSPSYS 1644
Query: 188 -TGPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMS 361
T P +SP + + S SP S + T +P +P SP SP Y+ S
Sbjct: 1645 PTSPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1703
Query: 362 PRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
P + + + +Y+P SP+Y TSP YSP++P+ + +SP Y
Sbjct: 1704 PSY--------SPTSPSYSPTSPSYSPTSPS--YSPTSPSYSPTSPSY 1741
Score = 53.9 bits (128), Expect = 6e-06
Identities = 51/161 (31%), Positives = 80/161 (49%), Gaps = 3/161 (1%)
Frame = +2
Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAY--TGPGGF 205
SP+ + Y+P TP + +P+Y SP +P T SP Y T P +
Sbjct: 1738 SPSYSPTSPNYSPTSPNY-TPTSPSYSPTSPSY--SPT---SPNYTPTSPNYSPTSPS-Y 1790
Query: 206 SPINATASFSPIMSS-ADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGL 382
SP + S+SP S + ++ R TP +P +P+ +P SP+SP Y+ SP++
Sbjct: 1791 SP--TSPSYSPTSPSYSPSSPRYTP--QSPTYTPS---SPSYSPSSPSYSPTSPKY---- 1839
Query: 383 GGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
+ +Y+P+SP Y TSP YSP++P + +SP Y
Sbjct: 1840 ----TPTSPSYSPSSPEYTPTSP--KYSPTSPKYSPTSPKY 1874
[24][TOP]
>UniRef100_Q9AXN1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Botryocladia
uvarioides RepID=Q9AXN1_9FLOR
Length = 1712
Score = 72.4 bits (176), Expect = 2e-11
Identities = 66/189 (34%), Positives = 84/189 (44%), Gaps = 28/189 (14%)
Frame = +2
Query: 23 IARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGG 202
+A SPA ++ G +G+ TPG TP +A P+R G T P+
Sbjct: 1439 MAWSPARGDATPGLHRPMDGRTTPG--LRTGYTPMWA--PSRM---GSTRGGPSAFNVQQ 1491
Query: 203 FSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSP---------ASPGYA- 352
FSP ASFSP ++ G+ TP +SP G + P MSP ASPG A
Sbjct: 1492 FSPSADEASFSPSPATPGNFGQ-NANAYTPLQSPRGDYMPPMSPGGAASPYVSASPGRAS 1550
Query: 353 --AMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMG----------------YSPSTP 478
A SP + G AG +APASPAY TSP G YSP++P
Sbjct: 1551 PYATSPAYPQSPGSYNAGSG--FAPASPAYKVTSPAPGGYGGAYQSPARSPGAQYSPTSP 1608
Query: 479 ALAVSSPGY 505
A +SPGY
Sbjct: 1609 AFTPTSPGY 1617
Score = 65.5 bits (158), Expect = 2e-09
Identities = 56/172 (32%), Positives = 80/172 (46%), Gaps = 14/172 (8%)
Frame = +2
Query: 5 AAASARIARSPAMP----ESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGT- 169
+A A + SPA P ++ YTP ++P + M+P A SP + +PG
Sbjct: 1495 SADEASFSPSPATPGNFGQNANAYTP----LQSPRGDYMPPMSPGGAASPYVSASPGRAS 1550
Query: 170 --AFSPAYT-GPGGFSPINATASFSPIMS-SADAAGRATPGRMTPGRSPAGRFTPRMSPA 337
A SPAY PG ++ + A SP ++ A G +P RSP ++ SP
Sbjct: 1551 PYATSPAYPQSPGSYNAGSGFAPASPAYKVTSPAPGGYGGAYQSPARSPGAQY----SPT 1606
Query: 338 SPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAY-MATSP----GMGYSPSTP 478
SP + SP + G G G GAY+P P+Y A SP G+ YSP +P
Sbjct: 1607 SPAFTPTSPGYSSATGPG-RPGTGAYSPTGPSYNAAASPGYQSGINYSPGSP 1657
[25][TOP]
>UniRef100_A4S3M0 DNA-directed RNA polymerase n=1 Tax=Ostreococcus lucimarinus CCE9901
RepID=A4S3M0_OSTLU
Length = 1646
Score = 72.4 bits (176), Expect = 2e-11
Identities = 57/166 (34%), Positives = 77/166 (46%), Gaps = 19/166 (11%)
Frame = +2
Query: 65 TPGREGQRTPGRAFD---AAMTPTYAYSPARARTP-----------GGTAFSPAYT--GP 196
TPG G TPGR + +P++ SP ++P G AFSP + G
Sbjct: 1461 TPGHGGMMTPGRDGTPGWGSKSPSFLLSPGGHQSPFDTSMAFSPYSDGMAFSPGMSPGGF 1520
Query: 197 GGFSPIN-ATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFG 373
GG+SP + A + SP S A T +P +P SP SP Y+ SP +
Sbjct: 1521 GGYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYS 1580
Query: 374 GGLGGGPAGG--AGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
PA + AY+P SPAY TSP YSP++PA + +SP Y
Sbjct: 1581 PT---SPAYSPTSPAYSPTSPAYSPTSP--AYSPTSPAYSPTSPAY 1621
Score = 70.1 bits (170), Expect = 8e-11
Identities = 53/145 (36%), Positives = 72/145 (49%), Gaps = 2/145 (1%)
Frame = +2
Query: 77 EGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYT-GPGGF-SPINATASFSPIMSS 250
+G RTPG MTP R TPG + SP++ PGG SP + + +FSP
Sbjct: 1457 DGSRTPGHG--GMMTP------GRDGTPGWGSKSPSFLLSPGGHQSPFDTSMAFSPYSDG 1508
Query: 251 ADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASP 430
+ +PG G SP +P SP SP Y+ SP + + + AY+P SP
Sbjct: 1509 MAFSPGMSPGGFG-GYSPT---SPAYSPTSPAYSPTSPAY--------SPTSPAYSPTSP 1556
Query: 431 AYMATSPGMGYSPSTPALAVSSPGY 505
AY TSP YSP++PA + +SP Y
Sbjct: 1557 AYSPTSP--AYSPTSPAYSPTSPAY 1579
[26][TOP]
>UniRef100_UPI0001796DD3 PREDICTED: similar to DNA-directed RNA polymerase II subunit RPB1
(RNA polymerase II subunit B1) (DNA-directed RNA
polymerase II subunit A) (DNA-directed RNA polymerase III
largest subunit) n=1 Tax=Equus caballus
RepID=UPI0001796DD3
Length = 1834
Score = 72.0 bits (175), Expect = 2e-11
Identities = 54/154 (35%), Positives = 76/154 (49%), Gaps = 5/154 (3%)
Frame = +2
Query: 59 GYTPGREGQRTPGRA-FDAAMTPTY-AYSPA--RARTPGGTAFSP-AYTGPGGFSPINAT 223
G P G +P ++ TP Y A+SP+ TPG FSP A + GFSP +
Sbjct: 1504 GSAPSPMGGISPAMTPWNVGATPAYGAWSPSVGSGMTPGAAGFSPSAASDASGFSP-GYS 1562
Query: 224 ASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGG 403
++SP S + G ++P +PG G +P SP SP Y SP GG
Sbjct: 1563 PAWSPTPGSPGSPGPSSPYIPSPG----GAMSPSYSPTSPAYEPRSP-------GGYTPQ 1611
Query: 404 AGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
+ +Y+P SP+Y TSP YSP++P + +SP Y
Sbjct: 1612 SPSYSPTSPSYSPTSP--SYSPTSPNYSPTSPSY 1643
Score = 67.8 bits (164), Expect = 4e-10
Identities = 51/162 (31%), Positives = 72/162 (44%), Gaps = 4/162 (2%)
Frame = +2
Query: 32 SPAMPESERGYTPGREG--QRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYT--GPG 199
SP+ G++PG TPG + Y SP A +P + SPAY PG
Sbjct: 1547 SPSAASDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPG 1606
Query: 200 GFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGG 379
G++P + S+SP S +P SP +P SP SP Y+ SP
Sbjct: 1607 GYTP--QSPSYSPTSPSYSPT--------SPSYSPT---SPNYSPTSPSYSPTSP----- 1648
Query: 380 LGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
+Y+P SP+Y TSP YSP++P+ + +SP Y
Sbjct: 1649 ----------SYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1678
Score = 54.3 bits (129), Expect = 4e-06
Identities = 47/164 (28%), Positives = 72/164 (43%), Gaps = 8/164 (4%)
Frame = +2
Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY--T 190
SP+ + Y+P ++ +P+Y+ YSP +P + SP+Y T
Sbjct: 1668 SPSYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPSYSPT---SPSYSPTSPSYSPT 1723
Query: 191 GPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPR 367
P +SP + + S SP S T TP +P SP SP Y SP
Sbjct: 1724 SPS-YSPTSPSYSPTSPSYSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPN 1782
Query: 368 FGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSP 499
+ + +Y+P SP+Y TSP GYSP++P +++SP
Sbjct: 1783 YSP-TSPSYSPTTPSYSPTSPSYSPTSP--GYSPTSPTYSLTSP 1823
[27][TOP]
>UniRef100_O00820 DNA-directed RNA polymerase (Fragment) n=1 Tax=Acanthamoeba
castellanii RepID=O00820_ACACA
Length = 1569
Score = 72.0 bits (175), Expect = 2e-11
Identities = 57/166 (34%), Positives = 81/166 (48%), Gaps = 18/166 (10%)
Frame = +2
Query: 62 YTPGRE--GQRTPGRAFDAAMTPTYAYS-PARARTPGGT---AFSPAYT------GPGGF 205
Y PG G TP D P + ++ P +PG T ++SP G G F
Sbjct: 1400 YEPGATSPGSATPYMGSDERYLPNFFHTTPMYRMSPGATPAASYSPYVDFGEFSPGRGSF 1459
Query: 206 SPINATASFSPIMSSADAAGR----ATPGRM--TPGRSPAGRFTPRMSPASPGYAAMSPR 367
SP ++ S+SP AG ++PG +PG SP+ +P SPASPGY+ SP
Sbjct: 1460 SPSPSSPSYSPASPGYSPAGAGYSPSSPGYSPSSPGYSPS---SPGYSPASPGYSPSSPA 1516
Query: 368 FGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
+ + + Y+PASP+Y TSP YSP++P+ + SSP Y
Sbjct: 1517 Y--------SPTSPKYSPASPSYSPTSP--AYSPTSPSYSPSSPSY 1552
Score = 60.5 bits (145), Expect = 6e-08
Identities = 46/141 (32%), Positives = 72/141 (51%), Gaps = 3/141 (2%)
Frame = +2
Query: 80 GQRTPGRAFDAAMTPTYAYSPAR-ARTPGGTAFSPAYTGPGGFSPINATASFSPIMSSAD 256
G+ +PGR + + +YSPA +P G +SP+ G SP +SP S+
Sbjct: 1450 GEFSPGRGSFSPSPSSPSYSPASPGYSPAGAGYSPSSPGYSPSSP-----GYSP---SSP 1501
Query: 257 AAGRATPGRM--TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASP 430
A+PG +P SP +P+ SPASP Y+ SP + + + +Y+P+SP
Sbjct: 1502 GYSPASPGYSPSSPAYSPT---SPKYSPASPSYSPTSPAY--------SPTSPSYSPSSP 1550
Query: 431 AYMATSPGMGYSPSTPALAVS 493
+Y TSP YSP++P+ + S
Sbjct: 1551 SYSPTSP--SYSPTSPSYSPS 1569
Score = 55.8 bits (133), Expect = 2e-06
Identities = 40/119 (33%), Positives = 56/119 (47%), Gaps = 3/119 (2%)
Frame = +2
Query: 158 PGGTAFSPAYTGPGGFSPINATASFSPIMSSADAAGRATPG-RMTPGRSPAGRFTPRMS- 331
P G + + PG SP +AT TP RM+PG +PA ++P +
Sbjct: 1390 PAGGEATAMFYEPGATSPGSATPYMGSDERYLPNFFHTTPMYRMSPGATPAASYSPYVDF 1449
Query: 332 -PASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
SPG + SP + + +Y+PASP Y + G GYSPS+P + SSPGY
Sbjct: 1450 GEFSPGRGSFSP----------SPSSPSYSPASPGY--SPAGAGYSPSSPGYSPSSPGY 1496
[28][TOP]
>UniRef100_B0XMU6 DNA-directed RNA polymerase n=2 Tax=Aspergillus fumigatus
RepID=B0XMU6_ASPFC
Length = 1750
Score = 72.0 bits (175), Expect = 2e-11
Identities = 55/162 (33%), Positives = 77/162 (47%), Gaps = 27/162 (16%)
Frame = +2
Query: 101 AFDAAMTPTYAYSPAR---ARTPGGTA-----------FSPAYTGPGGFSP--------- 211
AF P A+SP R A +PGG FSPA T P G+SP
Sbjct: 1517 AFIGTPDPESAFSPIRQAGAESPGGFTEYQPTGGFGGGFSPAATSPAGYSPSSPFSANPT 1576
Query: 212 ---INATASFSPIMSSADAAGRATPGRMT-PGRSPAGRFTPRMSPASPGYAAMSPRFGGG 379
+ T+S+SP ++ G +P MT PG SPA +P +P SP Y+ SP +G
Sbjct: 1577 SPGYSPTSSYSP---TSPGMGITSPRFMTSPGFSPA---SPSFAPTSPAYSPTSPAYGQA 1630
Query: 380 LGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
P +Y+P SP + TSP YSP++P+ + +SP +
Sbjct: 1631 SPTSP-----SYSPTSPGFSPTSP--NYSPTSPSFSPASPAF 1665
Score = 60.8 bits (146), Expect = 5e-08
Identities = 62/188 (32%), Positives = 79/188 (42%), Gaps = 30/188 (15%)
Frame = +2
Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGFSP 211
SPA S GY+P P +PT +YSP +PG SP + GFSP
Sbjct: 1556 SPAAT-SPAGYSPSSPFSANPT---SPGYSPTSSYSPT---SPGMGITSPRFMTSPGFSP 1608
Query: 212 INATASFSPIMSS----ADAAGRATP-----GRMTPGRSPAGR-----------FTPRMS 331
A+ SF+P + + A G+A+P +PG SP +P S
Sbjct: 1609 --ASPSFAPTSPAYSPTSPAYGQASPTSPSYSPTSPGFSPTSPNYSPTSPSFSPASPAFS 1666
Query: 332 PASPGYAAMSPRFGG-GLGGGPAGGAG-AYAPASPAYMATSPGMGYSPSTPALAVS---- 493
P SP Y+ SP GG G P Y P SP + TSP YSP++P A S
Sbjct: 1667 PTSPSYSPTSPAIGGAGRHLSPTSPTSPKYTPTSPGWSPTSP-QTYSPTSPNFAGSPTSP 1725
Query: 494 ----SPGY 505
SPGY
Sbjct: 1726 GGPTSPGY 1733
[29][TOP]
>UniRef100_UPI0000EBDCD2 PREDICTED: polymerase (RNA) II (DNA directed) polypeptide A, 220kDa
isoform 4 n=1 Tax=Bos taurus RepID=UPI0000EBDCD2
Length = 1970
Score = 71.6 bits (174), Expect = 3e-11
Identities = 56/162 (34%), Positives = 74/162 (45%), Gaps = 16/162 (9%)
Frame = +2
Query: 68 PGREGQRTPGRAFDAAMTPTYAYSPA-----RARTPGGTAFSPAY-----TGPGGFSPIN 217
PG G F +A +P SPA + TP A+SP+ G GFSP
Sbjct: 1491 PGLGAAGPTGMFFGSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGSGMTPGAAGFSPSA 1550
Query: 218 AT--ASFSPIMSSADAAGRATPGRMTPGR----SPAGRFTPRMSPASPGYAAMSPRFGGG 379
A+ + FSP S A + +PG P SP G +P SP SP Y SP
Sbjct: 1551 ASDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSP----- 1605
Query: 380 LGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
GG + +Y+P SP+Y TSP YSP++P + +SP Y
Sbjct: 1606 --GGYTPQSPSYSPTSPSYSPTSP--SYSPTSPNYSPTSPSY 1643
Score = 69.7 bits (169), Expect = 1e-10
Identities = 51/162 (31%), Positives = 76/162 (46%), Gaps = 4/162 (2%)
Frame = +2
Query: 32 SPAMPESERGYTPGREG--QRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYT--GPG 199
SP+ G++PG TPG + Y SP A +P + SPAY PG
Sbjct: 1547 SPSAASDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPG 1606
Query: 200 GFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGG 379
G++P + S+SP S + +P SP +P SP SP Y+ SP +
Sbjct: 1607 GYTP--QSPSYSPTSPSYSPTSPSY-SPTSPNYSPT---SPSYSPTSPSYSPTSPSY--- 1657
Query: 380 LGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
+ + +Y+P SP+Y TSP YSP++P+ + +SP Y
Sbjct: 1658 -----SPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1692
Score = 67.8 bits (164), Expect = 4e-10
Identities = 56/172 (32%), Positives = 83/172 (48%), Gaps = 23/172 (13%)
Frame = +2
Query: 59 GYTPGREGQRTPGRA-FDAAMTPTY-AYSPA--RARTPGGTAFSP-AYTGPGGFSPINAT 223
G P G +P ++ TP Y A+SP+ TPG FSP A + GFSP +
Sbjct: 1504 GSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGSGMTPGAAGFSPSAASDASGFSP-GYS 1562
Query: 224 ASFSPIMSSADAAGRATP------GRMTPGRSPA---------GRFTPRM---SPASPGY 349
++SP S + G ++P G M+P SP G +TP+ SP SP Y
Sbjct: 1563 PAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSPSY 1622
Query: 350 AAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
+ SP + + + +Y+P SP+Y TSP YSP++P+ + +SP Y
Sbjct: 1623 SPTSPSYSP-TSPNYSPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1671
Score = 61.6 bits (148), Expect = 3e-08
Identities = 50/168 (29%), Positives = 77/168 (45%), Gaps = 8/168 (4%)
Frame = +2
Query: 26 ARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY- 187
A SP+ + Y P G TP + +P+Y+ YSP +P + SP+Y
Sbjct: 1588 AMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPT---SPNYSPTSPSYS 1644
Query: 188 -TGPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMS 361
T P +SP + + S SP S + T +P +P SP SP Y+ S
Sbjct: 1645 PTSPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1703
Query: 362 PRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
P + + + +Y+P SP+Y TSP YSP++P+ + +SP Y
Sbjct: 1704 PSY--------SPTSPSYSPTSPSYSPTSPS--YSPTSPSYSPTSPSY 1741
Score = 53.9 bits (128), Expect = 6e-06
Identities = 51/161 (31%), Positives = 80/161 (49%), Gaps = 3/161 (1%)
Frame = +2
Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAY--TGPGGF 205
SP+ + Y+P TP + +P+Y SP +P T SP Y T P +
Sbjct: 1738 SPSYSPTSPNYSPTSPNY-TPTSPSYSPTSPSY--SPT---SPNYTPTSPNYSPTSPS-Y 1790
Query: 206 SPINATASFSPIMSS-ADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGL 382
SP + S+SP S + ++ R TP +P +P+ +P SP+SP Y+ SP++
Sbjct: 1791 SP--TSPSYSPTSPSYSPSSPRYTP--QSPTYTPS---SPSYSPSSPSYSPTSPKY---- 1839
Query: 383 GGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
+ +Y+P+SP Y TSP YSP++P + +SP Y
Sbjct: 1840 ----TPTSPSYSPSSPEYTPTSP--KYSPTSPKYSPTSPKY 1874
[30][TOP]
>UniRef100_UPI0000E24648 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
(RPB1) n=1 Tax=Pan troglodytes RepID=UPI0000E24648
Length = 1913
Score = 71.6 bits (174), Expect = 3e-11
Identities = 56/162 (34%), Positives = 74/162 (45%), Gaps = 16/162 (9%)
Frame = +2
Query: 68 PGREGQRTPGRAFDAAMTPTYAYSPA-----RARTPGGTAFSPAY-----TGPGGFSPIN 217
PG G F +A +P SPA + TP A+SP+ G GFSP
Sbjct: 1491 PGLGAAGPTGMFFGSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGSGMTPGAAGFSPSA 1550
Query: 218 AT--ASFSPIMSSADAAGRATPGRMTPGR----SPAGRFTPRMSPASPGYAAMSPRFGGG 379
A+ + FSP S A + +PG P SP G +P SP SP Y SP
Sbjct: 1551 ASDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSP----- 1605
Query: 380 LGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
GG + +Y+P SP+Y TSP YSP++P + +SP Y
Sbjct: 1606 --GGYTPQSPSYSPTSPSYSPTSP--SYSPTSPNYSPTSPSY 1643
Score = 69.7 bits (169), Expect = 1e-10
Identities = 51/162 (31%), Positives = 76/162 (46%), Gaps = 4/162 (2%)
Frame = +2
Query: 32 SPAMPESERGYTPGREG--QRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYT--GPG 199
SP+ G++PG TPG + Y SP A +P + SPAY PG
Sbjct: 1547 SPSAASDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPG 1606
Query: 200 GFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGG 379
G++P + S+SP S + +P SP +P SP SP Y+ SP +
Sbjct: 1607 GYTP--QSPSYSPTSPSYSPTSPSY-SPTSPNYSPT---SPSYSPTSPSYSPTSPSY--- 1657
Query: 380 LGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
+ + +Y+P SP+Y TSP YSP++P+ + +SP Y
Sbjct: 1658 -----SPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1692
Score = 67.8 bits (164), Expect = 4e-10
Identities = 56/172 (32%), Positives = 83/172 (48%), Gaps = 23/172 (13%)
Frame = +2
Query: 59 GYTPGREGQRTPGRA-FDAAMTPTY-AYSPA--RARTPGGTAFSP-AYTGPGGFSPINAT 223
G P G +P ++ TP Y A+SP+ TPG FSP A + GFSP +
Sbjct: 1504 GSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGSGMTPGAAGFSPSAASDASGFSP-GYS 1562
Query: 224 ASFSPIMSSADAAGRATP------GRMTPGRSPA---------GRFTPRM---SPASPGY 349
++SP S + G ++P G M+P SP G +TP+ SP SP Y
Sbjct: 1563 PAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSPSY 1622
Query: 350 AAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
+ SP + + + +Y+P SP+Y TSP YSP++P+ + +SP Y
Sbjct: 1623 SPTSPSYSP-TSPNYSPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1671
Score = 55.5 bits (132), Expect = 2e-06
Identities = 44/164 (26%), Positives = 73/164 (44%), Gaps = 6/164 (3%)
Frame = +2
Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAYTGP 196
SP+ + Y+P ++ +P+Y+ YSP +P + SP+Y+
Sbjct: 1668 SPSYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPSYSPT---SPSYSPTSPSYSPT 1723
Query: 197 G-GFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFG 373
+ P +S SP S + + R TP +P SP+SP Y+ SP++
Sbjct: 1724 SQSYHPTVVDSSTSPSYSPTSPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKY- 1782
Query: 374 GGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
+ +Y+P+SP Y TSP YSP++P + +SP Y
Sbjct: 1783 -------TPTSPSYSPSSPEYTPTSP--KYSPTSPKYSPTSPKY 1817
Score = 54.3 bits (129), Expect = 4e-06
Identities = 49/163 (30%), Positives = 75/163 (46%), Gaps = 5/163 (3%)
Frame = +2
Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAYTGP 196
SP+ + Y+P + D++ +P+Y+ YSP+ +P T SP YT P
Sbjct: 1710 SPSYSPTSPSYSPTSQSYHPT--VVDSSTSPSYSPTSPSYSPS---SPRYTPQSPTYT-P 1763
Query: 197 GGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGG 376
S ++ S+SP + + TP +P SP+ +P +P SP Y+ SP+
Sbjct: 1764 SSPSYSPSSPSYSP------TSPKYTP--TSPSYSPS---SPEYTPTSPKYSPTSPK--- 1809
Query: 377 GLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
Y+P SP Y TSP YSP+TP + +SP Y
Sbjct: 1810 ------------YSPTSPKYSPTSPT--YSPTTPKYSPTSPTY 1838
[31][TOP]
>UniRef100_UPI0001B7A25C UPI0001B7A25C related cluster n=1 Tax=Rattus norvegicus
RepID=UPI0001B7A25C
Length = 1968
Score = 71.6 bits (174), Expect = 3e-11
Identities = 56/162 (34%), Positives = 74/162 (45%), Gaps = 16/162 (9%)
Frame = +2
Query: 68 PGREGQRTPGRAFDAAMTPTYAYSPA-----RARTPGGTAFSPAY-----TGPGGFSPIN 217
PG G F +A +P SPA + TP A+SP+ G GFSP
Sbjct: 1493 PGLGAAGPTGMFFGSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGDGMTPGAAGFSPSA 1552
Query: 218 AT--ASFSPIMSSADAAGRATPGRMTPGR----SPAGRFTPRMSPASPGYAAMSPRFGGG 379
A+ + FSP S A + +PG P SP G +P SP SP Y SP
Sbjct: 1553 ASDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSP----- 1607
Query: 380 LGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
GG + +Y+P SP+Y TSP YSP++P + +SP Y
Sbjct: 1608 --GGYTPQSPSYSPTSPSYSPTSP--SYSPTSPNYSPTSPSY 1645
Score = 69.7 bits (169), Expect = 1e-10
Identities = 51/162 (31%), Positives = 76/162 (46%), Gaps = 4/162 (2%)
Frame = +2
Query: 32 SPAMPESERGYTPGREG--QRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYT--GPG 199
SP+ G++PG TPG + Y SP A +P + SPAY PG
Sbjct: 1549 SPSAASDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPG 1608
Query: 200 GFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGG 379
G++P + S+SP S + +P SP +P SP SP Y+ SP +
Sbjct: 1609 GYTP--QSPSYSPTSPSYSPTSPSY-SPTSPNYSPT---SPSYSPTSPSYSPTSPSY--- 1659
Query: 380 LGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
+ + +Y+P SP+Y TSP YSP++P+ + +SP Y
Sbjct: 1660 -----SPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1694
Score = 67.4 bits (163), Expect = 5e-10
Identities = 56/172 (32%), Positives = 83/172 (48%), Gaps = 23/172 (13%)
Frame = +2
Query: 59 GYTPGREGQRTPGRA-FDAAMTPTY-AYSPA--RARTPGGTAFSP-AYTGPGGFSPINAT 223
G P G +P ++ TP Y A+SP+ TPG FSP A + GFSP +
Sbjct: 1506 GSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGDGMTPGAAGFSPSAASDASGFSP-GYS 1564
Query: 224 ASFSPIMSSADAAGRATP------GRMTPGRSPA---------GRFTPRM---SPASPGY 349
++SP S + G ++P G M+P SP G +TP+ SP SP Y
Sbjct: 1565 PAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSPSY 1624
Query: 350 AAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
+ SP + + + +Y+P SP+Y TSP YSP++P+ + +SP Y
Sbjct: 1625 SPTSPSYSP-TSPNYSPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1673
Score = 61.6 bits (148), Expect = 3e-08
Identities = 50/168 (29%), Positives = 77/168 (45%), Gaps = 8/168 (4%)
Frame = +2
Query: 26 ARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY- 187
A SP+ + Y P G TP + +P+Y+ YSP +P + SP+Y
Sbjct: 1590 AMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPT---SPNYSPTSPSYS 1646
Query: 188 -TGPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMS 361
T P +SP + + S SP S + T +P +P SP SP Y+ S
Sbjct: 1647 PTSPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1705
Query: 362 PRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
P + + + +Y+P SP+Y TSP YSP++P+ + +SP Y
Sbjct: 1706 PSY--------SPTSPSYSPTSPSYSPTSPS--YSPTSPSYSPTSPSY 1743
Score = 53.9 bits (128), Expect = 6e-06
Identities = 51/161 (31%), Positives = 80/161 (49%), Gaps = 3/161 (1%)
Frame = +2
Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAY--TGPGGF 205
SP+ + Y+P TP + +P+Y SP +P T SP Y T P +
Sbjct: 1740 SPSYSPTSPNYSPTSPNY-TPTSPSYSPTSPSY--SPT---SPNYTPTSPNYSPTSPS-Y 1792
Query: 206 SPINATASFSPIMSS-ADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGL 382
SP + S+SP S + ++ R TP +P +P+ +P SP+SP Y+ SP++
Sbjct: 1793 SP--TSPSYSPTSPSYSPSSPRYTP--QSPTYTPS---SPSYSPSSPSYSPTSPKY---- 1841
Query: 383 GGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
+ +Y+P+SP Y TSP YSP++P + +SP Y
Sbjct: 1842 ----TPTSPSYSPSSPEYTPTSP--KYSPTSPKYSPTSPKY 1876
[32][TOP]
>UniRef100_UPI0000DA33D8 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
(RPB1) n=1 Tax=Rattus norvegicus RepID=UPI0000DA33D8
Length = 1970
Score = 71.6 bits (174), Expect = 3e-11
Identities = 56/162 (34%), Positives = 74/162 (45%), Gaps = 16/162 (9%)
Frame = +2
Query: 68 PGREGQRTPGRAFDAAMTPTYAYSPA-----RARTPGGTAFSPAY-----TGPGGFSPIN 217
PG G F +A +P SPA + TP A+SP+ G GFSP
Sbjct: 1491 PGLGAAGPTGMFFGSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGSGMTPGAAGFSPSA 1550
Query: 218 AT--ASFSPIMSSADAAGRATPGRMTPGR----SPAGRFTPRMSPASPGYAAMSPRFGGG 379
A+ + FSP S A + +PG P SP G +P SP SP Y SP
Sbjct: 1551 ASDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSP----- 1605
Query: 380 LGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
GG + +Y+P SP+Y TSP YSP++P + +SP Y
Sbjct: 1606 --GGYTPQSPSYSPTSPSYSPTSP--SYSPTSPNYSPTSPSY 1643
Score = 69.7 bits (169), Expect = 1e-10
Identities = 51/162 (31%), Positives = 76/162 (46%), Gaps = 4/162 (2%)
Frame = +2
Query: 32 SPAMPESERGYTPGREG--QRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYT--GPG 199
SP+ G++PG TPG + Y SP A +P + SPAY PG
Sbjct: 1547 SPSAASDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPG 1606
Query: 200 GFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGG 379
G++P + S+SP S + +P SP +P SP SP Y+ SP +
Sbjct: 1607 GYTP--QSPSYSPTSPSYSPTSPSY-SPTSPNYSPT---SPSYSPTSPSYSPTSPSY--- 1657
Query: 380 LGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
+ + +Y+P SP+Y TSP YSP++P+ + +SP Y
Sbjct: 1658 -----SPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1692
Score = 67.8 bits (164), Expect = 4e-10
Identities = 56/172 (32%), Positives = 83/172 (48%), Gaps = 23/172 (13%)
Frame = +2
Query: 59 GYTPGREGQRTPGRA-FDAAMTPTY-AYSPA--RARTPGGTAFSP-AYTGPGGFSPINAT 223
G P G +P ++ TP Y A+SP+ TPG FSP A + GFSP +
Sbjct: 1504 GSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGSGMTPGAAGFSPSAASDASGFSP-GYS 1562
Query: 224 ASFSPIMSSADAAGRATP------GRMTPGRSPA---------GRFTPRM---SPASPGY 349
++SP S + G ++P G M+P SP G +TP+ SP SP Y
Sbjct: 1563 PAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSPSY 1622
Query: 350 AAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
+ SP + + + +Y+P SP+Y TSP YSP++P+ + +SP Y
Sbjct: 1623 SPTSPSYSP-TSPNYSPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1671
Score = 61.6 bits (148), Expect = 3e-08
Identities = 50/168 (29%), Positives = 77/168 (45%), Gaps = 8/168 (4%)
Frame = +2
Query: 26 ARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY- 187
A SP+ + Y P G TP + +P+Y+ YSP +P + SP+Y
Sbjct: 1588 AMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPT---SPNYSPTSPSYS 1644
Query: 188 -TGPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMS 361
T P +SP + + S SP S + T +P +P SP SP Y+ S
Sbjct: 1645 PTSPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1703
Query: 362 PRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
P + + + +Y+P SP+Y TSP YSP++P+ + +SP Y
Sbjct: 1704 PSY--------SPTSPSYSPTSPSYSPTSPS--YSPTSPSYSPTSPSY 1741
Score = 53.9 bits (128), Expect = 6e-06
Identities = 51/161 (31%), Positives = 80/161 (49%), Gaps = 3/161 (1%)
Frame = +2
Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAY--TGPGGF 205
SP+ + Y+P TP + +P+Y SP +P T SP Y T P +
Sbjct: 1738 SPSYSPTSPNYSPTSPNY-TPTSPSYSPTSPSY--SPT---SPNYTPTSPNYSPTSPS-Y 1790
Query: 206 SPINATASFSPIMSS-ADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGL 382
SP + S+SP S + ++ R TP +P +P+ +P SP+SP Y+ SP++
Sbjct: 1791 SP--TSPSYSPTSPSYSPSSPRYTP--QSPTYTPS---SPSYSPSSPSYSPTSPKY---- 1839
Query: 383 GGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
+ +Y+P+SP Y TSP YSP++P + +SP Y
Sbjct: 1840 ----TPTSPSYSPSSPEYTPTSP--KYSPTSPKYSPTSPKY 1874
[33][TOP]
>UniRef100_UPI0001951285 220 kDa DNA-directed RNA polymerase polypeptide A n=1 Tax=Canis lupus
familiaris RepID=UPI0001951285
Length = 1969
Score = 71.6 bits (174), Expect = 3e-11
Identities = 56/162 (34%), Positives = 74/162 (45%), Gaps = 16/162 (9%)
Frame = +2
Query: 68 PGREGQRTPGRAFDAAMTPTYAYSPA-----RARTPGGTAFSPAY-----TGPGGFSPIN 217
PG G F +A +P SPA + TP A+SP+ G GFSP
Sbjct: 1491 PGLGAAGPTGMFFGSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGSGMTPGAAGFSPSA 1550
Query: 218 AT--ASFSPIMSSADAAGRATPGRMTPGR----SPAGRFTPRMSPASPGYAAMSPRFGGG 379
A+ + FSP S A + +PG P SP G +P SP SP Y SP
Sbjct: 1551 ASDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSP----- 1605
Query: 380 LGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
GG + +Y+P SP+Y TSP YSP++P + +SP Y
Sbjct: 1606 --GGYTPQSPSYSPTSPSYSPTSP--SYSPTSPNYSPTSPSY 1643
Score = 67.8 bits (164), Expect = 4e-10
Identities = 56/172 (32%), Positives = 83/172 (48%), Gaps = 23/172 (13%)
Frame = +2
Query: 59 GYTPGREGQRTPGRA-FDAAMTPTY-AYSPA--RARTPGGTAFSP-AYTGPGGFSPINAT 223
G P G +P ++ TP Y A+SP+ TPG FSP A + GFSP +
Sbjct: 1504 GSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGSGMTPGAAGFSPSAASDASGFSP-GYS 1562
Query: 224 ASFSPIMSSADAAGRATP------GRMTPGRSPA---------GRFTPRM---SPASPGY 349
++SP S + G ++P G M+P SP G +TP+ SP SP Y
Sbjct: 1563 PAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSPSY 1622
Query: 350 AAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
+ SP + + + +Y+P SP+Y TSP YSP++P+ + +SP Y
Sbjct: 1623 SPTSPSYSP-TSPNYSPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1671
Score = 58.9 bits (141), Expect = 2e-07
Identities = 50/159 (31%), Positives = 79/159 (49%), Gaps = 1/159 (0%)
Frame = +2
Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGFSP 211
SP+ + Y+P R TP + +P+Y SP +P T SP Y+ SP
Sbjct: 1738 SPSYSPTSPNYSPSRPNY-TPTSPSYSPTSPSY--SPT---SPNYTPMSPNYSPTSPNSP 1791
Query: 212 INATASFSPIMSS-ADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGG 388
+ S+SP S + ++ R TP +P +P+ +P SP+SP Y+ SP++
Sbjct: 1792 --TSPSYSPTSPSYSPSSPRYTP--QSPTYTPS---SPSYSPSSPSYSPTSPKY------ 1838
Query: 389 GPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
+ +Y+P+SP Y TSP YSP++P + +SP Y
Sbjct: 1839 --TPTSPSYSPSSPEYTPTSP--KYSPTSPKYSPTSPKY 1873
[34][TOP]
>UniRef100_O35559 DNA-directed RNA polymerase n=1 Tax=Cricetulus griseus
RepID=O35559_CRIGR
Length = 1970
Score = 71.6 bits (174), Expect = 3e-11
Identities = 56/162 (34%), Positives = 74/162 (45%), Gaps = 16/162 (9%)
Frame = +2
Query: 68 PGREGQRTPGRAFDAAMTPTYAYSPA-----RARTPGGTAFSPAY-----TGPGGFSPIN 217
PG G F +A +P SPA + TP A+SP+ G GFSP
Sbjct: 1491 PGLGAAGPTGMFFGSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGSGMTPGAAGFSPSA 1550
Query: 218 AT--ASFSPIMSSADAAGRATPGRMTPGR----SPAGRFTPRMSPASPGYAAMSPRFGGG 379
A+ + FSP S A + +PG P SP G +P SP SP Y SP
Sbjct: 1551 ASDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSP----- 1605
Query: 380 LGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
GG + +Y+P SP+Y TSP YSP++P + +SP Y
Sbjct: 1606 --GGYTPQSPSYSPTSPSYSPTSP--SYSPTSPNYSPTSPSY 1643
Score = 69.7 bits (169), Expect = 1e-10
Identities = 51/162 (31%), Positives = 76/162 (46%), Gaps = 4/162 (2%)
Frame = +2
Query: 32 SPAMPESERGYTPGREG--QRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYT--GPG 199
SP+ G++PG TPG + Y SP A +P + SPAY PG
Sbjct: 1547 SPSAASDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPG 1606
Query: 200 GFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGG 379
G++P + S+SP S + +P SP +P SP SP Y+ SP +
Sbjct: 1607 GYTP--QSPSYSPTSPSYSPTSPSY-SPTSPNYSPT---SPSYSPTSPSYSPTSPSY--- 1657
Query: 380 LGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
+ + +Y+P SP+Y TSP YSP++P+ + +SP Y
Sbjct: 1658 -----SPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1692
Score = 67.8 bits (164), Expect = 4e-10
Identities = 56/172 (32%), Positives = 83/172 (48%), Gaps = 23/172 (13%)
Frame = +2
Query: 59 GYTPGREGQRTPGRA-FDAAMTPTY-AYSPA--RARTPGGTAFSP-AYTGPGGFSPINAT 223
G P G +P ++ TP Y A+SP+ TPG FSP A + GFSP +
Sbjct: 1504 GSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGSGMTPGAAGFSPSAASDASGFSP-GYS 1562
Query: 224 ASFSPIMSSADAAGRATP------GRMTPGRSPA---------GRFTPRM---SPASPGY 349
++SP S + G ++P G M+P SP G +TP+ SP SP Y
Sbjct: 1563 PAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSPSY 1622
Query: 350 AAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
+ SP + + + +Y+P SP+Y TSP YSP++P+ + +SP Y
Sbjct: 1623 SPTSPSYSP-TSPNYSPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1671
Score = 61.6 bits (148), Expect = 3e-08
Identities = 50/168 (29%), Positives = 77/168 (45%), Gaps = 8/168 (4%)
Frame = +2
Query: 26 ARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY- 187
A SP+ + Y P G TP + +P+Y+ YSP +P + SP+Y
Sbjct: 1588 AMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPT---SPNYSPTSPSYS 1644
Query: 188 -TGPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMS 361
T P +SP + + S SP S + T +P +P SP SP Y+ S
Sbjct: 1645 PTSPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1703
Query: 362 PRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
P + + + +Y+P SP+Y TSP YSP++P+ + +SP Y
Sbjct: 1704 PSY--------SPTSPSYSPTSPSYSPTSPS--YSPTSPSYSPTSPSY 1741
Score = 53.9 bits (128), Expect = 6e-06
Identities = 51/161 (31%), Positives = 80/161 (49%), Gaps = 3/161 (1%)
Frame = +2
Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAY--TGPGGF 205
SP+ + Y+P TP + +P+Y SP +P T SP Y T P +
Sbjct: 1738 SPSYSPTSPNYSPTSPNY-TPTSPSYSPTSPSY--SPT---SPNYTPTSPNYSPTSPS-Y 1790
Query: 206 SPINATASFSPIMSS-ADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGL 382
SP + S+SP S + ++ R TP +P +P+ +P SP+SP Y+ SP++
Sbjct: 1791 SP--TSPSYSPTSPSYSPSSPRYTP--QSPTYTPS---SPSYSPSSPSYSPTSPKY---- 1839
Query: 383 GGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
+ +Y+P+SP Y TSP YSP++P + +SP Y
Sbjct: 1840 ----TPTSPSYSPSSPEYTPTSP--KYSPTSPKYSPTSPKY 1874
[35][TOP]
>UniRef100_O08847 DNA-directed RNA polymerase n=1 Tax=Mus musculus RepID=O08847_MOUSE
Length = 1966
Score = 71.6 bits (174), Expect = 3e-11
Identities = 56/162 (34%), Positives = 74/162 (45%), Gaps = 16/162 (9%)
Frame = +2
Query: 68 PGREGQRTPGRAFDAAMTPTYAYSPA-----RARTPGGTAFSPAY-----TGPGGFSPIN 217
PG G F +A +P SPA + TP A+SP+ G GFSP
Sbjct: 1491 PGLGAAGPTGMFFGSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGSGMTPGAAGFSPSA 1550
Query: 218 AT--ASFSPIMSSADAAGRATPGRMTPGR----SPAGRFTPRMSPASPGYAAMSPRFGGG 379
A+ + FSP S A + +PG P SP G +P SP SP Y SP
Sbjct: 1551 ASDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSP----- 1605
Query: 380 LGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
GG + +Y+P SP+Y TSP YSP++P + +SP Y
Sbjct: 1606 --GGYTPQSPSYSPTSPSYSPTSP--SYSPTSPNYSPTSPSY 1643
Score = 69.7 bits (169), Expect = 1e-10
Identities = 51/162 (31%), Positives = 76/162 (46%), Gaps = 4/162 (2%)
Frame = +2
Query: 32 SPAMPESERGYTPGREG--QRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYT--GPG 199
SP+ G++PG TPG + Y SP A +P + SPAY PG
Sbjct: 1547 SPSAASDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPG 1606
Query: 200 GFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGG 379
G++P + S+SP S + +P SP +P SP SP Y+ SP +
Sbjct: 1607 GYTP--QSPSYSPTSPSYSPTSPSY-SPTSPNYSPT---SPSYSPTSPSYSPTSPSY--- 1657
Query: 380 LGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
+ + +Y+P SP+Y TSP YSP++P+ + +SP Y
Sbjct: 1658 -----SPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1692
Score = 67.8 bits (164), Expect = 4e-10
Identities = 56/172 (32%), Positives = 83/172 (48%), Gaps = 23/172 (13%)
Frame = +2
Query: 59 GYTPGREGQRTPGRA-FDAAMTPTY-AYSPA--RARTPGGTAFSP-AYTGPGGFSPINAT 223
G P G +P ++ TP Y A+SP+ TPG FSP A + GFSP +
Sbjct: 1504 GSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGSGMTPGAAGFSPSAASDASGFSP-GYS 1562
Query: 224 ASFSPIMSSADAAGRATP------GRMTPGRSPA---------GRFTPRM---SPASPGY 349
++SP S + G ++P G M+P SP G +TP+ SP SP Y
Sbjct: 1563 PAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSPSY 1622
Query: 350 AAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
+ SP + + + +Y+P SP+Y TSP YSP++P+ + +SP Y
Sbjct: 1623 SPTSPSYSP-TSPNYSPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1671
Score = 54.3 bits (129), Expect = 4e-06
Identities = 50/163 (30%), Positives = 74/163 (45%), Gaps = 5/163 (3%)
Frame = +2
Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAYTGP 196
SP+ + YTP ++ +P+Y+ YSP+ +P T SP YT P
Sbjct: 1766 SPSYSPTSPNYTPTSPNYSPTSPSYSPT-SPSYSPTSPSYSPS---SPRYTPQSPTYT-P 1820
Query: 197 GGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGG 376
S ++ S+SP + + TP +P SP+ +P +PASP Y+ SP+
Sbjct: 1821 SSPSYSPSSPSYSP------TSPKYTP--TSPSYSPS---SPEYTPASPKYSPTSPK--- 1866
Query: 377 GLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
Y+P SP Y TSP YSP+TP + +SP Y
Sbjct: 1867 ------------YSPTSPKYSPTSP--TYSPTTPKYSPTSPTY 1895
[36][TOP]
>UniRef100_B4DET1 cDNA FLJ53860, highly similar to DNA-directed RNA polymerase II
largest subunit (EC 2.7.7.6) n=1 Tax=Homo sapiens
RepID=B4DET1_HUMAN
Length = 855
Score = 71.6 bits (174), Expect = 3e-11
Identities = 56/162 (34%), Positives = 74/162 (45%), Gaps = 16/162 (9%)
Frame = +2
Query: 68 PGREGQRTPGRAFDAAMTPTYAYSPA-----RARTPGGTAFSPAY-----TGPGGFSPIN 217
PG G F +A +P SPA + TP A+SP+ G GFSP
Sbjct: 390 PGLGAAGPTGMFFGSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGSGMTPGAAGFSPSA 449
Query: 218 AT--ASFSPIMSSADAAGRATPGRMTPGR----SPAGRFTPRMSPASPGYAAMSPRFGGG 379
A+ + FSP S A + +PG P SP G +P SP SP Y SP
Sbjct: 450 ASDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSP----- 504
Query: 380 LGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
GG + +Y+P SP+Y TSP YSP++P + +SP Y
Sbjct: 505 --GGYTPQSPSYSPTSPSYSPTSP--SYSPTSPNYSPTSPSY 542
Score = 69.7 bits (169), Expect = 1e-10
Identities = 51/162 (31%), Positives = 76/162 (46%), Gaps = 4/162 (2%)
Frame = +2
Query: 32 SPAMPESERGYTPGREG--QRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYT--GPG 199
SP+ G++PG TPG + Y SP A +P + SPAY PG
Sbjct: 446 SPSAASDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPG 505
Query: 200 GFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGG 379
G++P + S+SP S + +P SP +P SP SP Y+ SP +
Sbjct: 506 GYTP--QSPSYSPTSPSYSPTSPSY-SPTSPNYSPT---SPSYSPTSPSYSPTSPSY--- 556
Query: 380 LGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
+ + +Y+P SP+Y TSP YSP++P+ + +SP Y
Sbjct: 557 -----SPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 591
Score = 67.8 bits (164), Expect = 4e-10
Identities = 56/172 (32%), Positives = 83/172 (48%), Gaps = 23/172 (13%)
Frame = +2
Query: 59 GYTPGREGQRTPGRA-FDAAMTPTY-AYSPA--RARTPGGTAFSP-AYTGPGGFSPINAT 223
G P G +P ++ TP Y A+SP+ TPG FSP A + GFSP +
Sbjct: 403 GSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGSGMTPGAAGFSPSAASDASGFSP-GYS 461
Query: 224 ASFSPIMSSADAAGRATP------GRMTPGRSPA---------GRFTPRM---SPASPGY 349
++SP S + G ++P G M+P SP G +TP+ SP SP Y
Sbjct: 462 PAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSPSY 521
Query: 350 AAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
+ SP + + + +Y+P SP+Y TSP YSP++P+ + +SP Y
Sbjct: 522 SPTSPSYSP-TSPNYSPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 570
Score = 61.6 bits (148), Expect = 3e-08
Identities = 50/168 (29%), Positives = 77/168 (45%), Gaps = 8/168 (4%)
Frame = +2
Query: 26 ARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY- 187
A SP+ + Y P G TP + +P+Y+ YSP +P + SP+Y
Sbjct: 487 AMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPT---SPNYSPTSPSYS 543
Query: 188 -TGPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMS 361
T P +SP + + S SP S + T +P +P SP SP Y+ S
Sbjct: 544 PTSPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 602
Query: 362 PRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
P + + + +Y+P SP+Y TSP YSP++P+ + +SP Y
Sbjct: 603 PSY--------SPTSPSYSPTSPSYSPTSPS--YSPTSPSYSPTSPSY 640
Score = 53.9 bits (128), Expect = 6e-06
Identities = 49/176 (27%), Positives = 75/176 (42%), Gaps = 18/176 (10%)
Frame = +2
Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARAR----TPGGTAFSPA 184
SP+ + YTP ++ +P+Y+ YSP+ R +P T SP+
Sbjct: 665 SPSYSPTSPNYTPTSPNYSPTSPSYSPT-SPSYSPTSPSYSPSSPRYTPQSPTYTPSSPS 723
Query: 185 YTGPG-GFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAM 358
Y+ +SP + + SP S T + +P TP+ SP SP Y+
Sbjct: 724 YSPSSPSYSPTSPKYTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPT 783
Query: 359 SPRFG------GGLGGGPAGGAGAYAPASPAYMATSP-GMGYSPSTPALAVSSPGY 505
SP + G + + Y+P SP Y TSP G YSP++P + +SP Y
Sbjct: 784 SPVYTPTSPKYSPTGPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTY 839
[37][TOP]
>UniRef100_A6NN93 DNA-directed RNA polymerase n=1 Tax=Homo sapiens RepID=A6NN93_HUMAN
Length = 1970
Score = 71.6 bits (174), Expect = 3e-11
Identities = 56/162 (34%), Positives = 74/162 (45%), Gaps = 16/162 (9%)
Frame = +2
Query: 68 PGREGQRTPGRAFDAAMTPTYAYSPA-----RARTPGGTAFSPAY-----TGPGGFSPIN 217
PG G F +A +P SPA + TP A+SP+ G GFSP
Sbjct: 1491 PGLGAAGPTGMFFGSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGSGMTPGAAGFSPSA 1550
Query: 218 AT--ASFSPIMSSADAAGRATPGRMTPGR----SPAGRFTPRMSPASPGYAAMSPRFGGG 379
A+ + FSP S A + +PG P SP G +P SP SP Y SP
Sbjct: 1551 ASDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSP----- 1605
Query: 380 LGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
GG + +Y+P SP+Y TSP YSP++P + +SP Y
Sbjct: 1606 --GGYTPQSPSYSPTSPSYSPTSP--SYSPTSPNYSPTSPSY 1643
Score = 69.7 bits (169), Expect = 1e-10
Identities = 51/162 (31%), Positives = 76/162 (46%), Gaps = 4/162 (2%)
Frame = +2
Query: 32 SPAMPESERGYTPGREG--QRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYT--GPG 199
SP+ G++PG TPG + Y SP A +P + SPAY PG
Sbjct: 1547 SPSAASDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPG 1606
Query: 200 GFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGG 379
G++P + S+SP S + +P SP +P SP SP Y+ SP +
Sbjct: 1607 GYTP--QSPSYSPTSPSYSPTSPSY-SPTSPNYSPT---SPSYSPTSPSYSPTSPSY--- 1657
Query: 380 LGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
+ + +Y+P SP+Y TSP YSP++P+ + +SP Y
Sbjct: 1658 -----SPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1692
Score = 67.8 bits (164), Expect = 4e-10
Identities = 56/172 (32%), Positives = 83/172 (48%), Gaps = 23/172 (13%)
Frame = +2
Query: 59 GYTPGREGQRTPGRA-FDAAMTPTY-AYSPA--RARTPGGTAFSP-AYTGPGGFSPINAT 223
G P G +P ++ TP Y A+SP+ TPG FSP A + GFSP +
Sbjct: 1504 GSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGSGMTPGAAGFSPSAASDASGFSP-GYS 1562
Query: 224 ASFSPIMSSADAAGRATP------GRMTPGRSPA---------GRFTPRM---SPASPGY 349
++SP S + G ++P G M+P SP G +TP+ SP SP Y
Sbjct: 1563 PAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSPSY 1622
Query: 350 AAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
+ SP + + + +Y+P SP+Y TSP YSP++P+ + +SP Y
Sbjct: 1623 SPTSPSYSP-TSPNYSPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1671
Score = 61.6 bits (148), Expect = 3e-08
Identities = 50/168 (29%), Positives = 77/168 (45%), Gaps = 8/168 (4%)
Frame = +2
Query: 26 ARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY- 187
A SP+ + Y P G TP + +P+Y+ YSP +P + SP+Y
Sbjct: 1588 AMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPT---SPNYSPTSPSYS 1644
Query: 188 -TGPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMS 361
T P +SP + + S SP S + T +P +P SP SP Y+ S
Sbjct: 1645 PTSPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1703
Query: 362 PRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
P + + + +Y+P SP+Y TSP YSP++P+ + +SP Y
Sbjct: 1704 PSY--------SPTSPSYSPTSPSYSPTSPS--YSPTSPSYSPTSPSY 1741
Score = 54.3 bits (129), Expect = 4e-06
Identities = 50/163 (30%), Positives = 74/163 (45%), Gaps = 5/163 (3%)
Frame = +2
Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAYTGP 196
SP+ + YTP ++ +P+Y+ YSP+ +P T SP YT P
Sbjct: 1766 SPSYSPTSPNYTPTSPNYSPTSPSYSPT-SPSYSPTSPSYSPS---SPRYTPQSPTYT-P 1820
Query: 197 GGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGG 376
S ++ S+SP A+ + TP +P SP+ +P +P SP Y+ SP+
Sbjct: 1821 SSPSYSPSSPSYSP------ASPKYTP--TSPSYSPS---SPEYTPTSPKYSPTSPK--- 1866
Query: 377 GLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
Y+P SP Y TSP YSP+TP + +SP Y
Sbjct: 1867 ------------YSPTSPKYSPTSPT--YSPTTPKYSPTSPTY 1895
Score = 54.3 bits (129), Expect = 4e-06
Identities = 52/162 (32%), Positives = 74/162 (45%), Gaps = 4/162 (2%)
Frame = +2
Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARAR-TPGGTAFSPAYTGPGGFS 208
SP+ S YTP + TP + +P+Y SPA + TP ++SP+ S
Sbjct: 1801 SPSYSPSSPRYTP-QSPTYTPSSPSYSPSSPSY--SPASPKYTPTSPSYSPSSPEYTPTS 1857
Query: 209 PINATAS--FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGL 382
P + S +SP S + T TP SP +P SP SP Y SP++
Sbjct: 1858 PKYSPTSPKYSPT-SPKYSPTSPTYSPTTPKYSPT---SPTYSPTSPVYTPTSPKYSP-T 1912
Query: 383 GGGPAGGAGAYAPASPAYMATSP-GMGYSPSTPALAVSSPGY 505
+ + Y+P SP Y TSP G YSP++P + +SP Y
Sbjct: 1913 SPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTY 1954
Score = 53.9 bits (128), Expect = 6e-06
Identities = 51/161 (31%), Positives = 80/161 (49%), Gaps = 3/161 (1%)
Frame = +2
Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAY--TGPGGF 205
SP+ + Y+P TP + +P+Y SP +P T SP Y T P +
Sbjct: 1738 SPSYSPTSPNYSPTSPNY-TPTSPSYSPTSPSY--SPT---SPNYTPTSPNYSPTSPS-Y 1790
Query: 206 SPINATASFSPIMSS-ADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGL 382
SP + S+SP S + ++ R TP +P +P+ +P SP+SP Y+ SP++
Sbjct: 1791 SP--TSPSYSPTSPSYSPSSPRYTP--QSPTYTPS---SPSYSPSSPSYSPASPKY---- 1839
Query: 383 GGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
+ +Y+P+SP Y TSP YSP++P + +SP Y
Sbjct: 1840 ----TPTSPSYSPSSPEYTPTSP--KYSPTSPKYSPTSPKY 1874
[38][TOP]
>UniRef100_A1CNZ4 DNA-directed RNA polymerase n=1 Tax=Aspergillus clavatus
RepID=A1CNZ4_ASPCL
Length = 1765
Score = 71.6 bits (174), Expect = 3e-11
Identities = 55/163 (33%), Positives = 75/163 (46%), Gaps = 28/163 (17%)
Frame = +2
Query: 101 AFDAAMTPTYAYSP---ARARTPGGTA-----------FSPAYTGPGGFSP--------- 211
A+ P A+SP A A TPGG FSPA T P G+SP
Sbjct: 1520 AYIGTPDPDSAFSPIGQAGAETPGGFTEYQPTGGFGGGFSPAATSPAGYSPTSPFSANPT 1579
Query: 212 ---INATASFSPIMSSADAAG-RATPGRMT-PGRSPAGRFTPRMSPASPGYAAMSPRFGG 376
+ T S+SPI + +PG MT PG SP +P +P SP Y+ SP +G
Sbjct: 1580 SPGYSPTTSYSPIAPGITSPRFNTSPGFMTSPGFSPV---SPSFAPTSPAYSPTSPAYGQ 1636
Query: 377 GLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
P +Y+P SP + TSP YSP++P+ + +SP +
Sbjct: 1637 ASPTSP-----SYSPTSPGFSPTSP--NYSPTSPSFSPASPAF 1672
Score = 58.5 bits (140), Expect = 2e-07
Identities = 63/198 (31%), Positives = 83/198 (41%), Gaps = 32/198 (16%)
Frame = +2
Query: 8 AASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTA----F 175
AA++ SP P S +PG +PT +YSP PG T+
Sbjct: 1561 AATSPAGYSPTSPFSANPTSPG--------------YSPTTSYSPI---APGITSPRFNT 1603
Query: 176 SPAYTGPGGFSPINAT-ASFSPIMS-SADAAGRATP-----GRMTPGRSPAGR------- 313
SP + GFSP++ + A SP S ++ A G+A+P +PG SP
Sbjct: 1604 SPGFMTSPGFSPVSPSFAPTSPAYSPTSPAYGQASPTSPSYSPTSPGFSPTSPNYSPTSP 1663
Query: 314 ----FTPRMSPASPGYAAMSPRFGG-GLGGGPAGGAG-AYAPASPAYMATSPGMGYSPST 475
+P SP SP Y+ SP GG G P Y P SP + TSP YSP++
Sbjct: 1664 SFSPASPAFSPTSPSYSPTSPAIGGAGRHLSPTSPTSPKYTPTSPGWSPTSP-QTYSPTS 1722
Query: 476 PALAVS--------SPGY 505
P A S SPGY
Sbjct: 1723 PNFAGSPTSPGGPTSPGY 1740
[39][TOP]
>UniRef100_P08775 DNA-directed RNA polymerase II subunit RPB1 n=1 Tax=Mus musculus
RepID=RPB1_MOUSE
Length = 1970
Score = 71.6 bits (174), Expect = 3e-11
Identities = 56/162 (34%), Positives = 74/162 (45%), Gaps = 16/162 (9%)
Frame = +2
Query: 68 PGREGQRTPGRAFDAAMTPTYAYSPA-----RARTPGGTAFSPAY-----TGPGGFSPIN 217
PG G F +A +P SPA + TP A+SP+ G GFSP
Sbjct: 1491 PGLGAAGPTGMFFGSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGSGMTPGAAGFSPSA 1550
Query: 218 AT--ASFSPIMSSADAAGRATPGRMTPGR----SPAGRFTPRMSPASPGYAAMSPRFGGG 379
A+ + FSP S A + +PG P SP G +P SP SP Y SP
Sbjct: 1551 ASDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSP----- 1605
Query: 380 LGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
GG + +Y+P SP+Y TSP YSP++P + +SP Y
Sbjct: 1606 --GGYTPQSPSYSPTSPSYSPTSP--SYSPTSPNYSPTSPSY 1643
Score = 69.7 bits (169), Expect = 1e-10
Identities = 51/162 (31%), Positives = 76/162 (46%), Gaps = 4/162 (2%)
Frame = +2
Query: 32 SPAMPESERGYTPGREG--QRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYT--GPG 199
SP+ G++PG TPG + Y SP A +P + SPAY PG
Sbjct: 1547 SPSAASDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPG 1606
Query: 200 GFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGG 379
G++P + S+SP S + +P SP +P SP SP Y+ SP +
Sbjct: 1607 GYTP--QSPSYSPTSPSYSPTSPSY-SPTSPNYSPT---SPSYSPTSPSYSPTSPSY--- 1657
Query: 380 LGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
+ + +Y+P SP+Y TSP YSP++P+ + +SP Y
Sbjct: 1658 -----SPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1692
Score = 67.8 bits (164), Expect = 4e-10
Identities = 56/172 (32%), Positives = 83/172 (48%), Gaps = 23/172 (13%)
Frame = +2
Query: 59 GYTPGREGQRTPGRA-FDAAMTPTY-AYSPA--RARTPGGTAFSP-AYTGPGGFSPINAT 223
G P G +P ++ TP Y A+SP+ TPG FSP A + GFSP +
Sbjct: 1504 GSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGSGMTPGAAGFSPSAASDASGFSP-GYS 1562
Query: 224 ASFSPIMSSADAAGRATP------GRMTPGRSPA---------GRFTPRM---SPASPGY 349
++SP S + G ++P G M+P SP G +TP+ SP SP Y
Sbjct: 1563 PAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSPSY 1622
Query: 350 AAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
+ SP + + + +Y+P SP+Y TSP YSP++P+ + +SP Y
Sbjct: 1623 SPTSPSYSP-TSPNYSPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1671
Score = 54.3 bits (129), Expect = 4e-06
Identities = 50/163 (30%), Positives = 74/163 (45%), Gaps = 5/163 (3%)
Frame = +2
Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAYTGP 196
SP+ + YTP ++ +P+Y+ YSP+ +P T SP YT P
Sbjct: 1766 SPSYSPTSPNYTPTSPNYSPTSPSYSPT-SPSYSPTSPSYSPS---SPRYTPQSPTYT-P 1820
Query: 197 GGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGG 376
S ++ S+SP + + TP +P SP+ +P +PASP Y+ SP+
Sbjct: 1821 SSPSYSPSSPSYSP------TSPKYTP--TSPSYSPS---SPEYTPASPKYSPTSPK--- 1866
Query: 377 GLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
Y+P SP Y TSP YSP+TP + +SP Y
Sbjct: 1867 ------------YSPTSPKYSPTSP--TYSPTTPKYSPTSPTY 1895
[40][TOP]
>UniRef100_P24928 DNA-directed RNA polymerase II subunit RPB1 n=2 Tax=Euarchontoglires
RepID=RPB1_HUMAN
Length = 1970
Score = 71.6 bits (174), Expect = 3e-11
Identities = 56/162 (34%), Positives = 74/162 (45%), Gaps = 16/162 (9%)
Frame = +2
Query: 68 PGREGQRTPGRAFDAAMTPTYAYSPA-----RARTPGGTAFSPAY-----TGPGGFSPIN 217
PG G F +A +P SPA + TP A+SP+ G GFSP
Sbjct: 1491 PGLGAAGPTGMFFGSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGSGMTPGAAGFSPSA 1550
Query: 218 AT--ASFSPIMSSADAAGRATPGRMTPGR----SPAGRFTPRMSPASPGYAAMSPRFGGG 379
A+ + FSP S A + +PG P SP G +P SP SP Y SP
Sbjct: 1551 ASDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSP----- 1605
Query: 380 LGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
GG + +Y+P SP+Y TSP YSP++P + +SP Y
Sbjct: 1606 --GGYTPQSPSYSPTSPSYSPTSP--SYSPTSPNYSPTSPSY 1643
Score = 69.7 bits (169), Expect = 1e-10
Identities = 51/162 (31%), Positives = 76/162 (46%), Gaps = 4/162 (2%)
Frame = +2
Query: 32 SPAMPESERGYTPGREG--QRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYT--GPG 199
SP+ G++PG TPG + Y SP A +P + SPAY PG
Sbjct: 1547 SPSAASDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPG 1606
Query: 200 GFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGG 379
G++P + S+SP S + +P SP +P SP SP Y+ SP +
Sbjct: 1607 GYTP--QSPSYSPTSPSYSPTSPSY-SPTSPNYSPT---SPSYSPTSPSYSPTSPSY--- 1657
Query: 380 LGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
+ + +Y+P SP+Y TSP YSP++P+ + +SP Y
Sbjct: 1658 -----SPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1692
Score = 67.8 bits (164), Expect = 4e-10
Identities = 56/172 (32%), Positives = 83/172 (48%), Gaps = 23/172 (13%)
Frame = +2
Query: 59 GYTPGREGQRTPGRA-FDAAMTPTY-AYSPA--RARTPGGTAFSP-AYTGPGGFSPINAT 223
G P G +P ++ TP Y A+SP+ TPG FSP A + GFSP +
Sbjct: 1504 GSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGSGMTPGAAGFSPSAASDASGFSP-GYS 1562
Query: 224 ASFSPIMSSADAAGRATP------GRMTPGRSPA---------GRFTPRM---SPASPGY 349
++SP S + G ++P G M+P SP G +TP+ SP SP Y
Sbjct: 1563 PAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSPSY 1622
Query: 350 AAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
+ SP + + + +Y+P SP+Y TSP YSP++P+ + +SP Y
Sbjct: 1623 SPTSPSYSP-TSPNYSPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1671
Score = 61.6 bits (148), Expect = 3e-08
Identities = 50/168 (29%), Positives = 77/168 (45%), Gaps = 8/168 (4%)
Frame = +2
Query: 26 ARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY- 187
A SP+ + Y P G TP + +P+Y+ YSP +P + SP+Y
Sbjct: 1588 AMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPT---SPNYSPTSPSYS 1644
Query: 188 -TGPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMS 361
T P +SP + + S SP S + T +P +P SP SP Y+ S
Sbjct: 1645 PTSPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1703
Query: 362 PRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
P + + + +Y+P SP+Y TSP YSP++P+ + +SP Y
Sbjct: 1704 PSY--------SPTSPSYSPTSPSYSPTSPS--YSPTSPSYSPTSPSY 1741
Score = 53.9 bits (128), Expect = 6e-06
Identities = 51/161 (31%), Positives = 80/161 (49%), Gaps = 3/161 (1%)
Frame = +2
Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAY--TGPGGF 205
SP+ + Y+P TP + +P+Y SP +P T SP Y T P +
Sbjct: 1738 SPSYSPTSPNYSPTSPNY-TPTSPSYSPTSPSY--SPT---SPNYTPTSPNYSPTSPS-Y 1790
Query: 206 SPINATASFSPIMSS-ADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGL 382
SP + S+SP S + ++ R TP +P +P+ +P SP+SP Y+ SP++
Sbjct: 1791 SP--TSPSYSPTSPSYSPSSPRYTP--QSPTYTPS---SPSYSPSSPSYSPTSPKY---- 1839
Query: 383 GGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
+ +Y+P+SP Y TSP YSP++P + +SP Y
Sbjct: 1840 ----TPTSPSYSPSSPEYTPTSP--KYSPTSPKYSPTSPKY 1874
[41][TOP]
>UniRef100_UPI00005A0B2C PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
(RPB1) isoform 23 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B2C
Length = 1888
Score = 71.2 bits (173), Expect = 4e-11
Identities = 56/163 (34%), Positives = 72/163 (44%), Gaps = 17/163 (10%)
Frame = +2
Query: 68 PGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYT-----------GPGGFSPI 214
PG G F +A +P SPA TP +PAY G GFSP
Sbjct: 1491 PGLGAAGPTGMFFGSAPSPMGGISPAM--TPWNQGATPAYDPDPGAGSGMTPGAAGFSPS 1548
Query: 215 NAT--ASFSPIMSSADAAGRATPGRMTPGR----SPAGRFTPRMSPASPGYAAMSPRFGG 376
A+ + FSP S A + +PG P SP G +P SP SP Y SP
Sbjct: 1549 AASDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSP---- 1604
Query: 377 GLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
GG + +Y+P SP+Y TSP YSP++P + +SP Y
Sbjct: 1605 ---GGYTPQSPSYSPTSPSYSPTSP--SYSPTSPNYSPTSPSY 1642
Score = 68.2 bits (165), Expect = 3e-10
Identities = 56/160 (35%), Positives = 78/160 (48%), Gaps = 6/160 (3%)
Frame = +2
Query: 44 PESERGYTPGREGQRTPGRAFDAA-MTPTYAYSPARARTPGGTAF----SPAYTGPGG-F 205
P + G TPG G +P A DA+ +P YSPA + TPG SP PGG
Sbjct: 1532 PGAGSGMTPGAAGF-SPSAASDASGFSP--GYSPAWSPTPGSPGSPGPSSPYIPSPGGAM 1588
Query: 206 SPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLG 385
SP S+SP ++ A +PG TP +P SP SP Y+ SP +
Sbjct: 1589 SP-----SYSP---TSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNY----- 1635
Query: 386 GGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
+ + +Y+P SP+Y TSP YSP++P+ + +SP Y
Sbjct: 1636 ---SPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1670
[42][TOP]
>UniRef100_UPI00005A0B29 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
(RPB1) isoform 20 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B29
Length = 1891
Score = 71.2 bits (173), Expect = 4e-11
Identities = 56/163 (34%), Positives = 72/163 (44%), Gaps = 17/163 (10%)
Frame = +2
Query: 68 PGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYT-----------GPGGFSPI 214
PG G F +A +P SPA TP +PAY G GFSP
Sbjct: 1460 PGLGAAGPTGMFFGSAPSPMGGISPAM--TPWNQGATPAYDPDPGAGSGMTPGAAGFSPS 1517
Query: 215 NAT--ASFSPIMSSADAAGRATPGRMTPGR----SPAGRFTPRMSPASPGYAAMSPRFGG 376
A+ + FSP S A + +PG P SP G +P SP SP Y SP
Sbjct: 1518 AASDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSP---- 1573
Query: 377 GLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
GG + +Y+P SP+Y TSP YSP++P + +SP Y
Sbjct: 1574 ---GGYTPQSPSYSPTSPSYSPTSP--SYSPTSPNYSPTSPSY 1611
Score = 68.2 bits (165), Expect = 3e-10
Identities = 56/160 (35%), Positives = 78/160 (48%), Gaps = 6/160 (3%)
Frame = +2
Query: 44 PESERGYTPGREGQRTPGRAFDAA-MTPTYAYSPARARTPGGTAF----SPAYTGPGG-F 205
P + G TPG G +P A DA+ +P YSPA + TPG SP PGG
Sbjct: 1501 PGAGSGMTPGAAGF-SPSAASDASGFSP--GYSPAWSPTPGSPGSPGPSSPYIPSPGGAM 1557
Query: 206 SPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLG 385
SP S+SP ++ A +PG TP +P SP SP Y+ SP +
Sbjct: 1558 SP-----SYSP---TSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNY----- 1604
Query: 386 GGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
+ + +Y+P SP+Y TSP YSP++P+ + +SP Y
Sbjct: 1605 ---SPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1639
Score = 54.7 bits (130), Expect = 3e-06
Identities = 49/165 (29%), Positives = 75/165 (45%), Gaps = 7/165 (4%)
Frame = +2
Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARAR-TPGGTAFSPAYTG 193
SP+ + Y+P ++ +P+Y+ YSP+R TP ++SP T
Sbjct: 1678 SPSYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPNYSPSRPNYTPTSPSYSP--TS 1734
Query: 194 PGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRF 370
P +SP + + SP S + + TP +P SP+ +P +P SP Y+ SP+
Sbjct: 1735 PS-YSPTSPNYTPMSPNYSPTPTSPKYTP--TSPSYSPS---SPEYTPTSPKYSPTSPK- 1787
Query: 371 GGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
Y+P SP Y TSP YSP+TP + +SP Y
Sbjct: 1788 --------------YSPTSPKYSPTSP--TYSPTTPKYSPTSPTY 1816
[43][TOP]
>UniRef100_UPI00005A0B28 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
(RPB1) isoform 19 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B28
Length = 1908
Score = 71.2 bits (173), Expect = 4e-11
Identities = 56/163 (34%), Positives = 72/163 (44%), Gaps = 17/163 (10%)
Frame = +2
Query: 68 PGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYT-----------GPGGFSPI 214
PG G F +A +P SPA TP +PAY G GFSP
Sbjct: 1477 PGLGAAGPTGMFFGSAPSPMGGISPAM--TPWNQGATPAYDPDPGAGSGMTPGAAGFSPS 1534
Query: 215 NAT--ASFSPIMSSADAAGRATPGRMTPGR----SPAGRFTPRMSPASPGYAAMSPRFGG 376
A+ + FSP S A + +PG P SP G +P SP SP Y SP
Sbjct: 1535 AASDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSP---- 1590
Query: 377 GLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
GG + +Y+P SP+Y TSP YSP++P + +SP Y
Sbjct: 1591 ---GGYTPQSPSYSPTSPSYSPTSP--SYSPTSPNYSPTSPSY 1628
Score = 68.2 bits (165), Expect = 3e-10
Identities = 56/160 (35%), Positives = 78/160 (48%), Gaps = 6/160 (3%)
Frame = +2
Query: 44 PESERGYTPGREGQRTPGRAFDAA-MTPTYAYSPARARTPGGTAF----SPAYTGPGG-F 205
P + G TPG G +P A DA+ +P YSPA + TPG SP PGG
Sbjct: 1518 PGAGSGMTPGAAGF-SPSAASDASGFSP--GYSPAWSPTPGSPGSPGPSSPYIPSPGGAM 1574
Query: 206 SPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLG 385
SP S+SP ++ A +PG TP +P SP SP Y+ SP +
Sbjct: 1575 SP-----SYSP---TSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNY----- 1621
Query: 386 GGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
+ + +Y+P SP+Y TSP YSP++P+ + +SP Y
Sbjct: 1622 ---SPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1656
Score = 54.7 bits (130), Expect = 3e-06
Identities = 49/165 (29%), Positives = 75/165 (45%), Gaps = 7/165 (4%)
Frame = +2
Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARAR-TPGGTAFSPAYTG 193
SP+ + Y+P ++ +P+Y+ YSP+R TP ++SP T
Sbjct: 1695 SPSYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPNYSPSRPNYTPTSPSYSP--TS 1751
Query: 194 PGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRF 370
P +SP + + SP S + + TP +P SP+ +P +P SP Y+ SP+
Sbjct: 1752 PS-YSPTSPNYTPMSPNYSPTPTSPKYTP--TSPSYSPS---SPEYTPTSPKYSPTSPK- 1804
Query: 371 GGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
Y+P SP Y TSP YSP+TP + +SP Y
Sbjct: 1805 --------------YSPTSPKYSPTSP--TYSPTTPKYSPTSPTY 1833
[44][TOP]
>UniRef100_UPI00005A0B24 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
(RPB1) isoform 15 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B24
Length = 1924
Score = 71.2 bits (173), Expect = 4e-11
Identities = 56/163 (34%), Positives = 72/163 (44%), Gaps = 17/163 (10%)
Frame = +2
Query: 68 PGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYT-----------GPGGFSPI 214
PG G F +A +P SPA TP +PAY G GFSP
Sbjct: 1493 PGLGAAGPTGMFFGSAPSPMGGISPAM--TPWNQGATPAYDPDPGAGSGMTPGAAGFSPS 1550
Query: 215 NAT--ASFSPIMSSADAAGRATPGRMTPGR----SPAGRFTPRMSPASPGYAAMSPRFGG 376
A+ + FSP S A + +PG P SP G +P SP SP Y SP
Sbjct: 1551 AASDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSP---- 1606
Query: 377 GLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
GG + +Y+P SP+Y TSP YSP++P + +SP Y
Sbjct: 1607 ---GGYTPQSPSYSPTSPSYSPTSP--SYSPTSPNYSPTSPSY 1644
Score = 68.2 bits (165), Expect = 3e-10
Identities = 56/160 (35%), Positives = 78/160 (48%), Gaps = 6/160 (3%)
Frame = +2
Query: 44 PESERGYTPGREGQRTPGRAFDAA-MTPTYAYSPARARTPGGTAF----SPAYTGPGG-F 205
P + G TPG G +P A DA+ +P YSPA + TPG SP PGG
Sbjct: 1534 PGAGSGMTPGAAGF-SPSAASDASGFSP--GYSPAWSPTPGSPGSPGPSSPYIPSPGGAM 1590
Query: 206 SPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLG 385
SP S+SP ++ A +PG TP +P SP SP Y+ SP +
Sbjct: 1591 SP-----SYSP---TSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNY----- 1637
Query: 386 GGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
+ + +Y+P SP+Y TSP YSP++P+ + +SP Y
Sbjct: 1638 ---SPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1672
Score = 54.7 bits (130), Expect = 3e-06
Identities = 49/165 (29%), Positives = 75/165 (45%), Gaps = 7/165 (4%)
Frame = +2
Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARAR-TPGGTAFSPAYTG 193
SP+ + Y+P ++ +P+Y+ YSP+R TP ++SP T
Sbjct: 1711 SPSYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPNYSPSRPNYTPTSPSYSP--TS 1767
Query: 194 PGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRF 370
P +SP + + SP S + + TP +P SP+ +P +P SP Y+ SP+
Sbjct: 1768 PS-YSPTSPNYTPMSPNYSPTPTSPKYTP--TSPSYSPS---SPEYTPTSPKYSPTSPK- 1820
Query: 371 GGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
Y+P SP Y TSP YSP+TP + +SP Y
Sbjct: 1821 --------------YSPTSPKYSPTSP--TYSPTTPKYSPTSPTY 1849
[45][TOP]
>UniRef100_UPI00005A0B21 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
(RPB1) isoform 12 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B21
Length = 1922
Score = 71.2 bits (173), Expect = 4e-11
Identities = 56/163 (34%), Positives = 72/163 (44%), Gaps = 17/163 (10%)
Frame = +2
Query: 68 PGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYT-----------GPGGFSPI 214
PG G F +A +P SPA TP +PAY G GFSP
Sbjct: 1491 PGLGAAGPTGMFFGSAPSPMGGISPAM--TPWNQGATPAYDPDPGAGSGMTPGAAGFSPS 1548
Query: 215 NAT--ASFSPIMSSADAAGRATPGRMTPGR----SPAGRFTPRMSPASPGYAAMSPRFGG 376
A+ + FSP S A + +PG P SP G +P SP SP Y SP
Sbjct: 1549 AASDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSP---- 1604
Query: 377 GLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
GG + +Y+P SP+Y TSP YSP++P + +SP Y
Sbjct: 1605 ---GGYTPQSPSYSPTSPSYSPTSP--SYSPTSPNYSPTSPSY 1642
Score = 68.2 bits (165), Expect = 3e-10
Identities = 56/160 (35%), Positives = 78/160 (48%), Gaps = 6/160 (3%)
Frame = +2
Query: 44 PESERGYTPGREGQRTPGRAFDAA-MTPTYAYSPARARTPGGTAF----SPAYTGPGG-F 205
P + G TPG G +P A DA+ +P YSPA + TPG SP PGG
Sbjct: 1532 PGAGSGMTPGAAGF-SPSAASDASGFSP--GYSPAWSPTPGSPGSPGPSSPYIPSPGGAM 1588
Query: 206 SPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLG 385
SP S+SP ++ A +PG TP +P SP SP Y+ SP +
Sbjct: 1589 SP-----SYSP---TSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNY----- 1635
Query: 386 GGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
+ + +Y+P SP+Y TSP YSP++P+ + +SP Y
Sbjct: 1636 ---SPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1670
Score = 54.7 bits (130), Expect = 3e-06
Identities = 49/165 (29%), Positives = 75/165 (45%), Gaps = 7/165 (4%)
Frame = +2
Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARAR-TPGGTAFSPAYTG 193
SP+ + Y+P ++ +P+Y+ YSP+R TP ++SP T
Sbjct: 1709 SPSYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPNYSPSRPNYTPTSPSYSP--TS 1765
Query: 194 PGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRF 370
P +SP + + SP S + + TP +P SP+ +P +P SP Y+ SP+
Sbjct: 1766 PS-YSPTSPNYTPMSPNYSPTPTSPKYTP--TSPSYSPS---SPEYTPTSPKYSPTSPK- 1818
Query: 371 GGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
Y+P SP Y TSP YSP+TP + +SP Y
Sbjct: 1819 --------------YSPTSPKYSPTSP--TYSPTTPKYSPTSPTY 1847
[46][TOP]
>UniRef100_UPI00005A0B20 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
(RPB1) isoform 11 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B20
Length = 1923
Score = 71.2 bits (173), Expect = 4e-11
Identities = 56/163 (34%), Positives = 72/163 (44%), Gaps = 17/163 (10%)
Frame = +2
Query: 68 PGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYT-----------GPGGFSPI 214
PG G F +A +P SPA TP +PAY G GFSP
Sbjct: 1492 PGLGAAGPTGMFFGSAPSPMGGISPAM--TPWNQGATPAYDPDPGAGSGMTPGAAGFSPS 1549
Query: 215 NAT--ASFSPIMSSADAAGRATPGRMTPGR----SPAGRFTPRMSPASPGYAAMSPRFGG 376
A+ + FSP S A + +PG P SP G +P SP SP Y SP
Sbjct: 1550 AASDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSP---- 1605
Query: 377 GLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
GG + +Y+P SP+Y TSP YSP++P + +SP Y
Sbjct: 1606 ---GGYTPQSPSYSPTSPSYSPTSP--SYSPTSPNYSPTSPSY 1643
Score = 68.2 bits (165), Expect = 3e-10
Identities = 56/160 (35%), Positives = 78/160 (48%), Gaps = 6/160 (3%)
Frame = +2
Query: 44 PESERGYTPGREGQRTPGRAFDAA-MTPTYAYSPARARTPGGTAF----SPAYTGPGG-F 205
P + G TPG G +P A DA+ +P YSPA + TPG SP PGG
Sbjct: 1533 PGAGSGMTPGAAGF-SPSAASDASGFSP--GYSPAWSPTPGSPGSPGPSSPYIPSPGGAM 1589
Query: 206 SPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLG 385
SP S+SP ++ A +PG TP +P SP SP Y+ SP +
Sbjct: 1590 SP-----SYSP---TSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNY----- 1636
Query: 386 GGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
+ + +Y+P SP+Y TSP YSP++P+ + +SP Y
Sbjct: 1637 ---SPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1671
Score = 54.7 bits (130), Expect = 3e-06
Identities = 49/165 (29%), Positives = 75/165 (45%), Gaps = 7/165 (4%)
Frame = +2
Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARAR-TPGGTAFSPAYTG 193
SP+ + Y+P ++ +P+Y+ YSP+R TP ++SP T
Sbjct: 1710 SPSYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPNYSPSRPNYTPTSPSYSP--TS 1766
Query: 194 PGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRF 370
P +SP + + SP S + + TP +P SP+ +P +P SP Y+ SP+
Sbjct: 1767 PS-YSPTSPNYTPMSPNYSPTPTSPKYTP--TSPSYSPS---SPEYTPTSPKYSPTSPK- 1819
Query: 371 GGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
Y+P SP Y TSP YSP+TP + +SP Y
Sbjct: 1820 --------------YSPTSPKYSPTSP--TYSPTTPKYSPTSPTY 1848
[47][TOP]
>UniRef100_UPI00005A0B17 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
(RPB1) isoform 3 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B17
Length = 1788
Score = 71.2 bits (173), Expect = 4e-11
Identities = 56/163 (34%), Positives = 72/163 (44%), Gaps = 17/163 (10%)
Frame = +2
Query: 68 PGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYT-----------GPGGFSPI 214
PG G F +A +P SPA TP +PAY G GFSP
Sbjct: 1491 PGLGAAGPTGMFFGSAPSPMGGISPAM--TPWNQGATPAYDPDPGAGSGMTPGAAGFSPS 1548
Query: 215 NAT--ASFSPIMSSADAAGRATPGRMTPGR----SPAGRFTPRMSPASPGYAAMSPRFGG 376
A+ + FSP S A + +PG P SP G +P SP SP Y SP
Sbjct: 1549 AASDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSP---- 1604
Query: 377 GLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
GG + +Y+P SP+Y TSP YSP++P + +SP Y
Sbjct: 1605 ---GGYTPQSPSYSPTSPSYSPTSP--SYSPTSPNYSPTSPSY 1642
Score = 68.2 bits (165), Expect = 3e-10
Identities = 56/160 (35%), Positives = 78/160 (48%), Gaps = 6/160 (3%)
Frame = +2
Query: 44 PESERGYTPGREGQRTPGRAFDAA-MTPTYAYSPARARTPGGTAF----SPAYTGPGG-F 205
P + G TPG G +P A DA+ +P YSPA + TPG SP PGG
Sbjct: 1532 PGAGSGMTPGAAGF-SPSAASDASGFSP--GYSPAWSPTPGSPGSPGPSSPYIPSPGGAM 1588
Query: 206 SPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLG 385
SP S+SP ++ A +PG TP +P SP SP Y+ SP +
Sbjct: 1589 SP-----SYSP---TSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNY----- 1635
Query: 386 GGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
+ + +Y+P SP+Y TSP YSP++P+ + +SP Y
Sbjct: 1636 ---SPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1670
Score = 53.9 bits (128), Expect = 6e-06
Identities = 50/190 (26%), Positives = 77/190 (40%), Gaps = 30/190 (15%)
Frame = +2
Query: 26 ARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARAR----TPGGTAFS 178
A SP+ + Y P G TP + +P+Y+ YSP +P + S
Sbjct: 1587 AMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTS 1646
Query: 179 PAY--TGPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGY 349
P+Y T P +SP + + S SP S + T +P +P SP SP Y
Sbjct: 1647 PSYSPTSPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1705
Query: 350 AAMSPRFG------GGLGGGPAGGAGAYAPASPAYMATSPGMG------------YSPST 475
+ SP + + + +Y+P SP+Y TSP YSP++
Sbjct: 1706 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPSRPNYTPTSPSYSPTS 1765
Query: 476 PALAVSSPGY 505
P+ + +SP Y
Sbjct: 1766 PSYSPTSPNY 1775
[48][TOP]
>UniRef100_UPI00005A0B16 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
(RPB1) isoform 2 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B16
Length = 1922
Score = 71.2 bits (173), Expect = 4e-11
Identities = 56/163 (34%), Positives = 72/163 (44%), Gaps = 17/163 (10%)
Frame = +2
Query: 68 PGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYT-----------GPGGFSPI 214
PG G F +A +P SPA TP +PAY G GFSP
Sbjct: 1491 PGLGAAGPTGMFFGSAPSPMGGISPAM--TPWNQGATPAYDPDPGAGSGMTPGAAGFSPS 1548
Query: 215 NAT--ASFSPIMSSADAAGRATPGRMTPGR----SPAGRFTPRMSPASPGYAAMSPRFGG 376
A+ + FSP S A + +PG P SP G +P SP SP Y SP
Sbjct: 1549 AASDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSP---- 1604
Query: 377 GLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
GG + +Y+P SP+Y TSP YSP++P + +SP Y
Sbjct: 1605 ---GGYTPQSPSYSPTSPSYSPTSP--SYSPTSPNYSPTSPSY 1642
Score = 68.2 bits (165), Expect = 3e-10
Identities = 56/160 (35%), Positives = 78/160 (48%), Gaps = 6/160 (3%)
Frame = +2
Query: 44 PESERGYTPGREGQRTPGRAFDAA-MTPTYAYSPARARTPGGTAF----SPAYTGPGG-F 205
P + G TPG G +P A DA+ +P YSPA + TPG SP PGG
Sbjct: 1532 PGAGSGMTPGAAGF-SPSAASDASGFSP--GYSPAWSPTPGSPGSPGPSSPYIPSPGGAM 1588
Query: 206 SPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLG 385
SP S+SP ++ A +PG TP +P SP SP Y+ SP +
Sbjct: 1589 SP-----SYSP---TSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNY----- 1635
Query: 386 GGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
+ + +Y+P SP+Y TSP YSP++P+ + +SP Y
Sbjct: 1636 ---SPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1670
Score = 54.7 bits (130), Expect = 3e-06
Identities = 49/165 (29%), Positives = 75/165 (45%), Gaps = 7/165 (4%)
Frame = +2
Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARAR-TPGGTAFSPAYTG 193
SP+ + Y+P ++ +P+Y+ YSP+R TP ++SP T
Sbjct: 1709 SPSYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPNYSPSRPNYTPTSPSYSP--TS 1765
Query: 194 PGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRF 370
P +SP + + SP S + + TP +P SP+ +P +P SP Y+ SP+
Sbjct: 1766 PS-YSPTSPNYTPMSPNYSPTPTSPKYTP--TSPSYSPS---SPEYTPTSPKYSPTSPK- 1818
Query: 371 GGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
Y+P SP Y TSP YSP+TP + +SP Y
Sbjct: 1819 --------------YSPTSPKYSPTSP--TYSPTTPKYSPTSPTY 1847
[49][TOP]
>UniRef100_B4E3V7 DNA-directed RNA polymerase n=1 Tax=Homo sapiens RepID=B4E3V7_HUMAN
Length = 1935
Score = 71.2 bits (173), Expect = 4e-11
Identities = 56/167 (33%), Positives = 75/167 (44%), Gaps = 21/167 (12%)
Frame = +2
Query: 68 PGREGQRTPGRAFDAAMTPTYAYSPA-----RARTPGGTAFSPAY-----TGPGGFSPIN 217
PG G F +A +P SPA + TP A+SP+ G GFSP
Sbjct: 1456 PGLGAAGPTGMFFGSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGSGMTPGAAGFSPSA 1515
Query: 218 AT--ASFSPIMSSADAAGRATPGRMTPGR----SPAGRFTPRMSPASPGYAAMSPRFGGG 379
A+ + FSP S A + +PG P SP G +P SP SP Y SP
Sbjct: 1516 ASDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSP----- 1570
Query: 380 LGGGPAGGAGAYAPASPAYMATSP-----GMGYSPSTPALAVSSPGY 505
GG + +Y+P SP+Y TSP YSP++P+ + +SP Y
Sbjct: 1571 --GGYTPQSPSYSPTSPSYSPTSPSYSPTSSNYSPTSPSYSPTSPSY 1615
Score = 70.1 bits (170), Expect = 8e-11
Identities = 51/162 (31%), Positives = 75/162 (46%), Gaps = 4/162 (2%)
Frame = +2
Query: 32 SPAMPESERGYTPGREG--QRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYT--GPG 199
SP+ G++PG TPG + Y SP A +P + SPAY PG
Sbjct: 1512 SPSAASDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPG 1571
Query: 200 GFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGG 379
G++P + S+SP S T +P S +P SP SP Y+ SP +
Sbjct: 1572 GYTP--QSPSYSPTSPSYSP----TSPSYSPTSSNYSPTSPSYSPTSPSYSPTSPSY--- 1622
Query: 380 LGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
+ + +Y+P SP+Y TSP YSP++P+ + +SP Y
Sbjct: 1623 -----SPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1657
Score = 68.6 bits (166), Expect = 2e-10
Identities = 56/172 (32%), Positives = 83/172 (48%), Gaps = 23/172 (13%)
Frame = +2
Query: 59 GYTPGREGQRTPGRA-FDAAMTPTY-AYSPA--RARTPGGTAFSP-AYTGPGGFSPINAT 223
G P G +P ++ TP Y A+SP+ TPG FSP A + GFSP +
Sbjct: 1469 GSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGSGMTPGAAGFSPSAASDASGFSP-GYS 1527
Query: 224 ASFSPIMSSADAAGRATP------GRMTPGRSPA---------GRFTPRM---SPASPGY 349
++SP S + G ++P G M+P SP G +TP+ SP SP Y
Sbjct: 1528 PAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSPSY 1587
Query: 350 AAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
+ SP + + + +Y+P SP+Y TSP YSP++P+ + +SP Y
Sbjct: 1588 SPTSPSYSP-TSSNYSPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1636
Score = 59.7 bits (143), Expect = 1e-07
Identities = 50/172 (29%), Positives = 77/172 (44%), Gaps = 12/172 (6%)
Frame = +2
Query: 26 ARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARAR----TPGGTAFS 178
A SP+ + Y P G TP + +P+Y+ YSP + +P + S
Sbjct: 1553 AMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSSNYSPTSPSYSPTS 1612
Query: 179 PAY--TGPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGY 349
P+Y T P +SP + + S SP S + T +P +P SP SP Y
Sbjct: 1613 PSYSPTSPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1671
Query: 350 AAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
+ SP + + + +Y+P SP+Y TSP YSP++P + +SP Y
Sbjct: 1672 SPTSPSYSP-TSPSYSPTSPSYSPTSPSYSPTSP--SYSPTSPNYSPTSPNY 1720
Score = 55.5 bits (132), Expect = 2e-06
Identities = 52/165 (31%), Positives = 73/165 (44%), Gaps = 7/165 (4%)
Frame = +2
Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAYTGP 196
SP+ S YTP + TP + +P+Y+ Y+P +P + SP YT
Sbjct: 1766 SPSYSPSSPRYTP-QSPTYTPSSPSYSPSSPSYSPTSPKYTPT---SPPYSPSSPEYTPT 1821
Query: 197 GG-FSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFG 373
FSP + +SP G T TP SP +P SP SP Y SP++
Sbjct: 1822 SPKFSP--TSPKYSPTSPKYSPTG-PTYSPTTPKYSPT---SPTYSPTSPVYTPTSPKYS 1875
Query: 374 GGLGGGPAGGAGAYAPASPAYMATSP-GMGYSPSTPALAVSSPGY 505
+ + Y+P SP Y TSP G YSP++P + +SP Y
Sbjct: 1876 P-TSPTYSPTSPQYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTY 1919
[50][TOP]
>UniRef100_P35074 DNA-directed RNA polymerase II subunit RPB1 n=1 Tax=Caenorhabditis
briggsae RepID=RPB1_CAEBR
Length = 1853
Score = 71.2 bits (173), Expect = 4e-11
Identities = 49/158 (31%), Positives = 70/158 (44%)
Frame = +2
Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGFSP 211
SPA G TP G +P M+P+ +SPA G + F+ GG+SP
Sbjct: 1503 SPAHSPWNSGVTPNYSGPWSP----TGGMSPSAGFSPAGNLDGGASPFNE-----GGWSP 1553
Query: 212 INATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGG 391
+ + A G +PG +P +P SP SP Y+ SP G
Sbjct: 1554 ASPGDPLGALSPRTPAYGGMSPGVYSPASPGFSMTSPHYSPTSPSYSPTSPAHHGQSPVS 1613
Query: 392 PAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
P +Y+P SP+Y TSP YSP++P+ + +SP Y
Sbjct: 1614 P-----SYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1644
Score = 61.2 bits (147), Expect = 4e-08
Identities = 55/172 (31%), Positives = 77/172 (44%), Gaps = 12/172 (6%)
Frame = +2
Query: 26 ARSPAMPESERGYTPGREGQRTPGRAFDAA-MTPTY-AYSPARARTPGGTAFSPAY--TG 193
A SP P + G +PG +PG + + +PT +YSP G + SP+Y T
Sbjct: 1562 ALSPRTP-AYGGMSPGVYSPASPGFSMTSPHYSPTSPSYSPTSPAHHGQSPVSPSYSPTS 1620
Query: 194 PGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRF 370
P +SP + + S SP S + T +P +P SP SP Y+ SPR+
Sbjct: 1621 PS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPRY 1679
Query: 371 G------GGLGGGPAGGAGAYAPASPAYMATSPGM-GYSPSTPALAVSSPGY 505
+ + Y+P SP Y TSP GYSPS+P + SSP Y
Sbjct: 1680 SPTSPTYSPTSPTYSPTSPTYSPTSPTYSPTSPSYEGYSPSSPKYSPSSPTY 1731
Score = 58.5 bits (140), Expect = 2e-07
Identities = 45/133 (33%), Positives = 66/133 (49%), Gaps = 2/133 (1%)
Frame = +2
Query: 113 AMTPTYAYSPARARTPGGTAFSPAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTP 292
A +P+ +SPA + P + +P Y+GP +SP + +AG + G +
Sbjct: 1495 AGSPSREFSPAHS--PWNSGVTPNYSGP-----------WSPTGGMSPSAGFSPAGNLDG 1541
Query: 293 GRSPAGRFTPRMSPASPG--YAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 466
G SP SPASPG A+SPR G P G Y+PASP + TSP YS
Sbjct: 1542 GASPFNE--GGWSPASPGDPLGALSPRTPAYGGMSP----GVYSPASPGFSMTSP--HYS 1593
Query: 467 PSTPALAVSSPGY 505
P++P+ + +SP +
Sbjct: 1594 PTSPSYSPTSPAH 1606
Score = 55.8 bits (133), Expect = 2e-06
Identities = 48/163 (29%), Positives = 80/163 (49%), Gaps = 5/163 (3%)
Frame = +2
Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAYTGP 196
SP P E GY+P + +P + +P+Y+ YSP +P + SP YT
Sbjct: 1708 SPTSPSYE-GYSPSSP-KYSPSSPTYSPTSPSYSPTSPQYSPT---SPQYSPSSPTYTP- 1761
Query: 197 GGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGG 376
++ +++P A ++ + +P +P SP +P +P+SP Y+ SP +
Sbjct: 1762 -------SSPTYNPTSPRAFSSPQYSP--TSPTYSPT---SPSYTPSSPQYSPTSPTYTP 1809
Query: 377 GLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
P G + Y+P+SP Y +SP YSP++P+ + SSP Y
Sbjct: 1810 SPADQP-GTSNQYSPSSPTYSPSSPT--YSPASPSYSPSSPTY 1849
[51][TOP]
>UniRef100_UPI0000F2BF13 PREDICTED: similar to RNA polymerase II isoform 2 n=1 Tax=Monodelphis
domestica RepID=UPI0000F2BF13
Length = 1932
Score = 70.9 bits (172), Expect = 5e-11
Identities = 50/163 (30%), Positives = 75/163 (46%), Gaps = 5/163 (3%)
Frame = +2
Query: 32 SPAMPESERGYTPGREG--QRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAY--TGPG 199
SP+ G++PG TPG + Y SP A +P + SPAY PG
Sbjct: 1509 SPSAASDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPG 1568
Query: 200 GFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGG 376
G++P + + S SP S + T +P +P SP SP Y+ SP +
Sbjct: 1569 GYTPQSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-- 1626
Query: 377 GLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
+ + +Y+P SP+Y TSP YSP++P+ + +SP Y
Sbjct: 1627 ------SPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1661
Score = 66.6 bits (161), Expect = 9e-10
Identities = 44/118 (37%), Positives = 61/118 (51%), Gaps = 1/118 (0%)
Frame = +2
Query: 155 TPGGTAFSP-AYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMS 331
TPG FSP A + GFSP + ++SP S + G ++P +PG G +P S
Sbjct: 1502 TPGAAGFSPSAASDASGFSP-GYSPAWSPTPGSPGSPGPSSPYIPSPG----GAMSPSYS 1556
Query: 332 PASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
P SP Y SP GG + +Y+P SP+Y TSP YSP++P + +SP Y
Sbjct: 1557 PTSPAYEPRSP-------GGYTPQSPSYSPTSPSYSPTSP--SYSPTSPNYSPTSPSY 1605
Score = 61.6 bits (148), Expect = 3e-08
Identities = 50/168 (29%), Positives = 77/168 (45%), Gaps = 8/168 (4%)
Frame = +2
Query: 26 ARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY- 187
A SP+ + Y P G TP + +P+Y+ YSP +P + SP+Y
Sbjct: 1550 AMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPT---SPNYSPTSPSYS 1606
Query: 188 -TGPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMS 361
T P +SP + + S SP S + T +P +P SP SP Y+ S
Sbjct: 1607 PTSPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1665
Query: 362 PRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
P + + + +Y+P SP+Y TSP YSP++P+ + +SP Y
Sbjct: 1666 PSY--------SPTSPSYSPTSPSYSPTSPS--YSPTSPSYSPTSPSY 1703
Score = 53.9 bits (128), Expect = 6e-06
Identities = 51/161 (31%), Positives = 80/161 (49%), Gaps = 3/161 (1%)
Frame = +2
Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAY--TGPGGF 205
SP+ + Y+P TP + +P+Y SP +P T SP Y T P +
Sbjct: 1700 SPSYSPTSPNYSPTSPNY-TPTSPSYSPTSPSY--SPT---SPNYTPTSPNYSPTSPS-Y 1752
Query: 206 SPINATASFSPIMSS-ADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGL 382
SP + S+SP S + ++ R TP +P +P+ +P SP+SP Y+ SP++
Sbjct: 1753 SP--TSPSYSPTSPSYSPSSPRYTP--QSPTYTPS---SPSYSPSSPSYSPTSPKY---- 1801
Query: 383 GGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
+ +Y+P+SP Y TSP YSP++P + +SP Y
Sbjct: 1802 ----TPTSPSYSPSSPEYTPTSP--KYSPTSPKYSPTSPKY 1836
[52][TOP]
>UniRef100_UPI0001B7A25B UPI0001B7A25B related cluster n=1 Tax=Rattus norvegicus
RepID=UPI0001B7A25B
Length = 1932
Score = 70.9 bits (172), Expect = 5e-11
Identities = 50/163 (30%), Positives = 75/163 (46%), Gaps = 5/163 (3%)
Frame = +2
Query: 32 SPAMPESERGYTPGREG--QRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAY--TGPG 199
SP+ G++PG TPG + Y SP A +P + SPAY PG
Sbjct: 1509 SPSAASDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPG 1568
Query: 200 GFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGG 376
G++P + + S SP S + T +P +P SP SP Y+ SP +
Sbjct: 1569 GYTPQSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-- 1626
Query: 377 GLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
+ + +Y+P SP+Y TSP YSP++P+ + +SP Y
Sbjct: 1627 ------SPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1661
Score = 66.6 bits (161), Expect = 9e-10
Identities = 44/118 (37%), Positives = 61/118 (51%), Gaps = 1/118 (0%)
Frame = +2
Query: 155 TPGGTAFSP-AYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMS 331
TPG FSP A + GFSP + ++SP S + G ++P +PG G +P S
Sbjct: 1502 TPGAAGFSPSAASDASGFSP-GYSPAWSPTPGSPGSPGPSSPYIPSPG----GAMSPSYS 1556
Query: 332 PASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
P SP Y SP GG + +Y+P SP+Y TSP YSP++P + +SP Y
Sbjct: 1557 PTSPAYEPRSP-------GGYTPQSPSYSPTSPSYSPTSP--SYSPTSPNYSPTSPSY 1605
Score = 61.6 bits (148), Expect = 3e-08
Identities = 50/168 (29%), Positives = 77/168 (45%), Gaps = 8/168 (4%)
Frame = +2
Query: 26 ARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY- 187
A SP+ + Y P G TP + +P+Y+ YSP +P + SP+Y
Sbjct: 1550 AMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPT---SPNYSPTSPSYS 1606
Query: 188 -TGPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMS 361
T P +SP + + S SP S + T +P +P SP SP Y+ S
Sbjct: 1607 PTSPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1665
Query: 362 PRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
P + + + +Y+P SP+Y TSP YSP++P+ + +SP Y
Sbjct: 1666 PSY--------SPTSPSYSPTSPSYSPTSPS--YSPTSPSYSPTSPSY 1703
Score = 53.9 bits (128), Expect = 6e-06
Identities = 51/161 (31%), Positives = 80/161 (49%), Gaps = 3/161 (1%)
Frame = +2
Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAY--TGPGGF 205
SP+ + Y+P TP + +P+Y SP +P T SP Y T P +
Sbjct: 1700 SPSYSPTSPNYSPTSPNY-TPTSPSYSPTSPSY--SPT---SPNYTPTSPNYSPTSPS-Y 1752
Query: 206 SPINATASFSPIMSS-ADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGL 382
SP + S+SP S + ++ R TP +P +P+ +P SP+SP Y+ SP++
Sbjct: 1753 SP--TSPSYSPTSPSYSPSSPRYTP--QSPTYTPS---SPSYSPSSPSYSPTSPKY---- 1801
Query: 383 GGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
+ +Y+P+SP Y TSP YSP++P + +SP Y
Sbjct: 1802 ----TPTSPSYSPSSPEYTPTSP--KYSPTSPKYSPTSPKY 1836
[53][TOP]
>UniRef100_A9U396 DNA-directed RNA polymerase n=1 Tax=Physcomitrella patens subsp.
patens RepID=A9U396_PHYPA
Length = 1742
Score = 70.9 bits (172), Expect = 5e-11
Identities = 54/160 (33%), Positives = 79/160 (49%), Gaps = 3/160 (1%)
Frame = +2
Query: 35 PAMPESERGYTPGREGQ-RTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGFSP 211
P+ ++ G TP R TP D M+P+Y SP+ +P A Y G FSP
Sbjct: 1481 PSFEATDYGMTPSRTPMIGTPHN--DGMMSPSYLLSPSLRASPLSDAQFSPYVGNMPFSP 1538
Query: 212 INATASFSPIMSSADAAGRATPG--RMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLG 385
++ +SP ++PG ++PG SP +P SP SPGY+ SP
Sbjct: 1539 --SSPGYSP----------SSPGYSPLSPGYSPT---SPGYSPTSPGYSPTSP------- 1576
Query: 386 GGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
G + + Y+P SP+Y TSP GYSP++P+ + +SP Y
Sbjct: 1577 -GYSPTSPGYSPTSPSYSPTSP--GYSPTSPSYSPTSPSY 1613
Score = 65.9 bits (159), Expect = 1e-09
Identities = 60/185 (32%), Positives = 83/185 (44%), Gaps = 17/185 (9%)
Frame = +2
Query: 2 DAAASARIARSPAMPESERGYTPGREGQR--TPGRA-FDAAMTPTY-AYSPARA----RT 157
DA S + P P S GY+P G +PG + +PT YSP +
Sbjct: 1524 DAQFSPYVGNMPFSPSSP-GYSPSSPGYSPLSPGYSPTSPGYSPTSPGYSPTSPGYSPTS 1582
Query: 158 PGGTAFSPAY--TGPG------GFSPINAT-ASFSPIMSSADAAGRATPGRMTPGRSPAG 310
PG + SP+Y T PG +SP + + A SP S + T +P
Sbjct: 1583 PGYSPTSPSYSPTSPGYSPTSPSYSPTSPSYAPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1642
Query: 311 RFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAV 490
+P SP SP Y+ SP + A + AY+P SP+Y TSPG YSP++P+ +
Sbjct: 1643 PTSPSYSPTSPSYSPTSPAYSP-TSPSYAPTSPAYSPTSPSYSPTSPG--YSPTSPSYSP 1699
Query: 491 SSPGY 505
SSP Y
Sbjct: 1700 SSPSY 1704
Score = 61.6 bits (148), Expect = 3e-08
Identities = 52/166 (31%), Positives = 75/166 (45%), Gaps = 8/166 (4%)
Frame = +2
Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY--T 190
SP + Y+P G ++ +P+YA YSP +P + SP+Y T
Sbjct: 1582 SPGYSPTSPSYSPTSPGYSPTSPSYSPT-SPSYAPTSPSYSPT---SPSYSPTSPSYSPT 1637
Query: 191 GPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPR 367
P +SP + + S SP S A T P +P SP SPGY+ SP
Sbjct: 1638 SPS-YSPTSPSYSPTSPSYSPTSPAYSPTSPSYAPTSPAYSPTSPSYSPTSPGYSPTSPS 1696
Query: 368 FGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
+ + + +Y+P SPAY TSP YSPS+P+ + +SP Y
Sbjct: 1697 YSPS-SPSYSPTSPSYSPTSPAYSPTSPR--YSPSSPSYSPTSPSY 1739
[54][TOP]
>UniRef100_Q4P7Q0 DNA-directed RNA polymerase n=1 Tax=Ustilago maydis
RepID=Q4P7Q0_USTMA
Length = 1774
Score = 70.9 bits (172), Expect = 5e-11
Identities = 66/186 (35%), Positives = 83/186 (44%), Gaps = 19/186 (10%)
Frame = +2
Query: 5 AAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTP--------TYAYSPARARTP 160
A + A SP P GY P G T M+P + AYSP R
Sbjct: 1547 AQSPAGYGFSPVSP----GYVPTSPGYATSPAGALGGMSPWTGNMGATSPAYSPTSPRIF 1602
Query: 161 GGTAFSPAY--TGPG------GFSPIN-ATASFSPIMSSADAAGRATPGRMTPGRSPAGR 313
GG A SP+Y T P +SP + A A +SP S A G AT + +P
Sbjct: 1603 GG-ATSPSYSPTSPSYSPASPNYSPSSPAGAGYSP-SSPAGRYGAATSPQYSPASPKFSP 1660
Query: 314 FTPRMSPASPGYAAMSPRFG--GGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALA 487
+P SPASP Y SP + G GG G ++P SPAY TSP YSP++PA +
Sbjct: 1661 TSPNYSPASPAYTPTSPVYSPTSPAMAGRGGGKG-FSPTSPAYSPTSPQ--YSPASPAFS 1717
Query: 488 VSSPGY 505
+SP Y
Sbjct: 1718 PTSPQY 1723
Score = 67.8 bits (164), Expect = 4e-10
Identities = 52/142 (36%), Positives = 64/142 (45%), Gaps = 19/142 (13%)
Frame = +2
Query: 137 SPARARTPGGTAFSPAY-----TGPG-GFSPINATASFSPIMSSADAAG--------RAT 274
+P A++P G FSP T PG SP A SP + A R
Sbjct: 1543 TPLGAQSPAGYGFSPVSPGYVPTSPGYATSPAGALGGMSPWTGNMGATSPAYSPTSPRIF 1602
Query: 275 PGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA-----YAPASPAYM 439
G +P SP +P SPASP Y+ SP G PAG GA Y+PASP +
Sbjct: 1603 GGATSPSYSPT---SPSYSPASPNYSPSSPAGAGYSPSSPAGRYGAATSPQYSPASPKFS 1659
Query: 440 ATSPGMGYSPSTPALAVSSPGY 505
TSP YSP++PA +SP Y
Sbjct: 1660 PTSP--NYSPASPAYTPTSPVY 1679
Score = 54.3 bits (129), Expect = 4e-06
Identities = 53/162 (32%), Positives = 75/162 (46%), Gaps = 7/162 (4%)
Frame = +2
Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARAR----TPGGTAFSPAYTGPG 199
SP+ P GY+P +P + AA +P Y SPA + +P + SPAYT
Sbjct: 1625 SPSSPAGA-GYSPS-----SPAGRYGAATSPQY--SPASPKFSPTSPNYSPASPAYTPT- 1675
Query: 200 GFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGG 379
SP+ + S P M+ +P +P SP +P+ SPASP ++ SP++
Sbjct: 1676 --SPVYSPTS--PAMAGRGGGKGFSP--TSPAYSPT---SPQYSPASPAFSPTSPQYS-- 1724
Query: 380 LGGGPAGGAGAYAPASPAYMATSPGMGY---SPSTPALAVSS 496
PA + Y+P SP Y TSP MG S P A +S
Sbjct: 1725 ----PA--SPQYSPTSPQYSPTSPAMGMGGASAGGPGAAAAS 1760
[55][TOP]
>UniRef100_A2QAT7 DNA-directed RNA polymerase n=1 Tax=Aspergillus niger CBS 513.88
RepID=A2QAT7_ASPNC
Length = 1747
Score = 70.9 bits (172), Expect = 5e-11
Identities = 56/141 (39%), Positives = 72/141 (51%), Gaps = 6/141 (4%)
Frame = +2
Query: 101 AFDAAMTPTYAYSPAR---ARTPGG-TAFSPAYTGPGGFSPINATASFSPIMSSADAAGR 268
A+ P +SP R A TPGG T + P GGFSP A+ SP S +
Sbjct: 1516 AYIGTPDPESNFSPIRQAGAETPGGFTEYQPTGGFGGGFSP----AATSPAGYSPSSPFS 1571
Query: 269 ATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRF-GGGLGGGPAGGAGAYAPASPAYMAT 445
A P +PG SP + SP SPG A SPRF G PA + ++AP SPAY T
Sbjct: 1572 ANP--TSPGYSPTSSY----SPTSPGMAITSPRFMSTSPGFSPA--SPSFAPTSPAYSPT 1623
Query: 446 SPGMGY-SPSTPALAVSSPGY 505
SP G SP++P+ + +SPG+
Sbjct: 1624 SPAYGQASPTSPSYSPTSPGF 1644
Score = 64.7 bits (156), Expect = 3e-09
Identities = 60/172 (34%), Positives = 83/172 (48%), Gaps = 14/172 (8%)
Frame = +2
Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAY--TGPGGF 205
SPA S GY+P P +PT +YSP +PG SP + T PG F
Sbjct: 1555 SPAAT-SPAGYSPSSPFSANPT---SPGYSPTSSYSPT---SPGMAITSPRFMSTSPG-F 1606
Query: 206 SPINATASFSPIMSS----ADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFG 373
SP A+ SF+P + + A G+A+P +P SP +P SP SP Y+ SP F
Sbjct: 1607 SP--ASPSFAPTSPAYSPTSPAYGQASP--TSPSYSPT---SPGFSPTSPNYSPTSPSFS 1659
Query: 374 GGLGGGPAGGAGAYAPASPAYMATSPGMG--------YSPSTPALAVSSPGY 505
PA + A++P SP+Y TSP +G SP++P +SPG+
Sbjct: 1660 ------PA--SPAFSPTSPSYSPTSPAVGGVGRHLSPTSPTSPKYTPTSPGW 1703
[56][TOP]
>UniRef100_A1D1U9 DNA-directed RNA polymerase n=1 Tax=Neosartorya fischeri NRRL 181
RepID=A1D1U9_NEOFI
Length = 1750
Score = 70.9 bits (172), Expect = 5e-11
Identities = 54/162 (33%), Positives = 77/162 (47%), Gaps = 27/162 (16%)
Frame = +2
Query: 101 AFDAAMTPTYAYSPAR---ARTPGGTA-----------FSPAYTGPGGFSP--------- 211
A+ P A+SP R A +PGG FSPA T P G+SP
Sbjct: 1517 AYIGTPDPESAFSPIRQAGAESPGGFTEYQPTGGFGGGFSPAATSPAGYSPSSPFSANPT 1576
Query: 212 ---INATASFSPIMSSADAAGRATPGRMT-PGRSPAGRFTPRMSPASPGYAAMSPRFGGG 379
+ T+S+SP ++ G +P MT PG SPA +P +P SP Y+ SP +G
Sbjct: 1577 SPGYSPTSSYSP---TSPGMGITSPRFMTSPGFSPA---SPSFAPTSPAYSPTSPAYGQA 1630
Query: 380 LGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
P +Y+P SP + TSP YSP++P+ + +SP +
Sbjct: 1631 SPTSP-----SYSPTSPGFSPTSP--NYSPTSPSFSPASPAF 1665
Score = 60.8 bits (146), Expect = 5e-08
Identities = 62/188 (32%), Positives = 79/188 (42%), Gaps = 30/188 (15%)
Frame = +2
Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGFSP 211
SPA S GY+P P +PT +YSP +PG SP + GFSP
Sbjct: 1556 SPAAT-SPAGYSPSSPFSANPT---SPGYSPTSSYSPT---SPGMGITSPRFMTSPGFSP 1608
Query: 212 INATASFSPIMSS----ADAAGRATP-----GRMTPGRSPAGR-----------FTPRMS 331
A+ SF+P + + A G+A+P +PG SP +P S
Sbjct: 1609 --ASPSFAPTSPAYSPTSPAYGQASPTSPSYSPTSPGFSPTSPNYSPTSPSFSPASPAFS 1666
Query: 332 PASPGYAAMSPRFGG-GLGGGPAGGAG-AYAPASPAYMATSPGMGYSPSTPALAVS---- 493
P SP Y+ SP GG G P Y P SP + TSP YSP++P A S
Sbjct: 1667 PTSPSYSPTSPAIGGAGRHLSPTSPTSPKYTPTSPGWSPTSP-QTYSPTSPNFAGSPTSP 1725
Query: 494 ----SPGY 505
SPGY
Sbjct: 1726 GGPTSPGY 1733
[57][TOP]
>UniRef100_P11414 DNA-directed RNA polymerase II subunit RPB1 (Fragment) n=1
Tax=Cricetulus griseus RepID=RPB1_CRIGR
Length = 467
Score = 70.9 bits (172), Expect = 5e-11
Identities = 50/163 (30%), Positives = 75/163 (46%), Gaps = 5/163 (3%)
Frame = +2
Query: 32 SPAMPESERGYTPGREG--QRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAY--TGPG 199
SP+ G++PG TPG + Y SP A +P + SPAY PG
Sbjct: 44 SPSAASDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPG 103
Query: 200 GFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGG 376
G++P + + S SP S + T +P +P SP SP Y+ SP +
Sbjct: 104 GYTPQSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-- 161
Query: 377 GLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
+ + +Y+P SP+Y TSP YSP++P+ + +SP Y
Sbjct: 162 ------SPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 196
Score = 66.6 bits (161), Expect = 9e-10
Identities = 44/118 (37%), Positives = 61/118 (51%), Gaps = 1/118 (0%)
Frame = +2
Query: 155 TPGGTAFSP-AYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMS 331
TPG FSP A + GFSP + ++SP S + G ++P +PG G +P S
Sbjct: 37 TPGAAGFSPSAASDASGFSP-GYSPAWSPTPGSPGSPGPSSPYIPSPG----GAMSPSYS 91
Query: 332 PASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
P SP Y SP GG + +Y+P SP+Y TSP YSP++P + +SP Y
Sbjct: 92 PTSPAYEPRSP-------GGYTPQSPSYSPTSPSYSPTSP--SYSPTSPNYSPTSPSY 140
Score = 61.6 bits (148), Expect = 3e-08
Identities = 50/168 (29%), Positives = 77/168 (45%), Gaps = 8/168 (4%)
Frame = +2
Query: 26 ARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY- 187
A SP+ + Y P G TP + +P+Y+ YSP +P + SP+Y
Sbjct: 85 AMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPT---SPNYSPTSPSYS 141
Query: 188 -TGPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMS 361
T P +SP + + S SP S + T +P +P SP SP Y+ S
Sbjct: 142 PTSPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 200
Query: 362 PRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
P + + + +Y+P SP+Y TSP YSP++P+ + +SP Y
Sbjct: 201 PSY--------SPTSPSYSPTSPSYSPTSPS--YSPTSPSYSPTSPSY 238
Score = 53.9 bits (128), Expect = 6e-06
Identities = 51/161 (31%), Positives = 80/161 (49%), Gaps = 3/161 (1%)
Frame = +2
Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAY--TGPGGF 205
SP+ + Y+P TP + +P+Y SP +P T SP Y T P +
Sbjct: 235 SPSYSPTSPNYSPTSPNY-TPTSPSYSPTSPSY--SPT---SPNYTPTSPNYSPTSPS-Y 287
Query: 206 SPINATASFSPIMSS-ADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGL 382
SP + S+SP S + ++ R TP +P +P+ +P SP+SP Y+ SP++
Sbjct: 288 SP--TSPSYSPTSPSYSPSSPRYTP--QSPTYTPS---SPSYSPSSPSYSPTSPKY---- 336
Query: 383 GGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
+ +Y+P+SP Y TSP YSP++P + +SP Y
Sbjct: 337 ----TPTSPSYSPSSPEYTPTSP--KYSPTSPKYSPTSPKY 371
[58][TOP]
>UniRef100_UPI00005A0B2B PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
(RPB1) isoform 22 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B2B
Length = 1892
Score = 70.5 bits (171), Expect = 6e-11
Identities = 57/154 (37%), Positives = 74/154 (48%), Gaps = 5/154 (3%)
Frame = +2
Query: 59 GYTPGREGQRTPGRA-FDAAMTPTY-AYSPA--RARTPGGTAFSP-AYTGPGGFSPINAT 223
G P G +P ++ TP Y A+SP+ TPG FSP A + GFSP
Sbjct: 1499 GSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGSGMTPGAAGFSPSAASDASGFSP---- 1554
Query: 224 ASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGG 403
+SP S TPG +PG SP G +P SP SP Y SP GG
Sbjct: 1555 -GYSPAWSP-------TPG--SPG-SPGGAMSPSYSPTSPAYEPRSP-------GGYTPQ 1596
Query: 404 AGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
+ +Y+P SP+Y TSP YSP++P + +SP Y
Sbjct: 1597 SPSYSPTSPSYSPTSP--SYSPTSPNYSPTSPSY 1628
Score = 67.0 bits (162), Expect = 7e-10
Identities = 57/169 (33%), Positives = 78/169 (46%), Gaps = 15/169 (8%)
Frame = +2
Query: 44 PESERGYTPGREGQRTPGRAFDAA-MTPTYAYSPARARTPG-----GTAFSPAYT----- 190
P G TPG G +P A DA+ +P YSPA + TPG G A SP+Y+
Sbjct: 1528 PSVGSGMTPGAAGF-SPSAASDASGFSP--GYSPAWSPTPGSPGSPGGAMSPSYSPTSPA 1584
Query: 191 ----GPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAM 358
PGG++P + S+SP S +P SP +P SP SP Y+
Sbjct: 1585 YEPRSPGGYTP--QSPSYSPTSPSYSPT--------SPSYSPT---SPNYSPTSPSYSPT 1631
Query: 359 SPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
SP +Y+P SP+Y TSP YSP++P+ + +SP Y
Sbjct: 1632 SP---------------SYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1663
Score = 54.3 bits (129), Expect = 4e-06
Identities = 47/166 (28%), Positives = 75/166 (45%), Gaps = 8/166 (4%)
Frame = +2
Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY--T 190
SP+ + Y+P ++ +P+Y+ YSP +P + SP+Y T
Sbjct: 1646 SPSYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPSYSPT---SPSYSPTSPSYSPT 1701
Query: 191 GPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPR 367
P +SP + + S SP S + T +P R +P SP SP Y+ SP+
Sbjct: 1702 SPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPSRPNYTPTSPSYSPTSPSYSPTSPK 1760
Query: 368 FGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
+ + +Y+P+SP Y TSP YSP++P + +SP Y
Sbjct: 1761 Y--------TPTSPSYSPSSPEYTPTSP--KYSPTSPKYSPTSPKY 1796
[59][TOP]
>UniRef100_Q99367 DNA-directed RNA polymerase (Fragment) n=1 Tax=Glycine max
RepID=Q99367_SOYBN
Length = 494
Score = 70.5 bits (171), Expect = 6e-11
Identities = 52/157 (33%), Positives = 77/157 (49%), Gaps = 9/157 (5%)
Frame = +2
Query: 62 YTPGREGQRTPGRA-------FDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGFSPINA 220
Y G + TP R+ + M+P+Y SP +P A Y G FSP +
Sbjct: 148 YMDGLDFGMTPARSPISGTPYHEGLMSPSYLLSPNLRLSPTSDAQFSPYVGGMAFSP-TS 206
Query: 221 TASFSPIMSSADAAGRATPGRM--TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGP 394
+ +SP S+ ++PG +PG SP +P SP SPGY+ SP + G
Sbjct: 207 SPGYSP---SSPGYSPSSPGYSPTSPGYSPT---SPGYSPTSPGYSPTSPTYSPS-SPGY 259
Query: 395 AGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
+ + AY+P SP+Y TSP YSP++P+ + +SP Y
Sbjct: 260 SPTSPAYSPTSPSYSPTSPS--YSPTSPSYSPTSPSY 294
Score = 57.4 bits (137), Expect = 5e-07
Identities = 51/175 (29%), Positives = 76/175 (43%), Gaps = 19/175 (10%)
Frame = +2
Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY--T 190
SP + Y+P G A+ +P+Y+ YSP +P + SP+Y T
Sbjct: 242 SPGYSPTSPTYSPSSPGYSPTSPAYSPT-SPSYSPTSPSYSPT---SPSYSPTSPSYSPT 297
Query: 191 GPGGFSPIN-ATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPR 367
P +SP + A + SP S + T +P +P SP SP Y+ SP
Sbjct: 298 SPS-YSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPA 356
Query: 368 FGGGLGGGPAGGAGAYAPASPAYMATSPG-----------MGYSPSTPALAVSSP 499
+ G + + +Y+P SP+Y TSP + YSPS+P L+ SSP
Sbjct: 357 YSP-TSPGYSPTSPSYSPTSPSYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPSSP 410
Score = 57.0 bits (136), Expect = 7e-07
Identities = 53/170 (31%), Positives = 79/170 (46%), Gaps = 12/170 (7%)
Frame = +2
Query: 32 SPAMPESERGYTPGREGQRTPGRAFDA---AMTPTY-AYSPARARTPGGTAFSPAY--TG 193
SP+ + Y+P A+ A +PT +YSP +P + SP+Y T
Sbjct: 284 SPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPSYSPT---SPSYSPTSPSYSPTS 340
Query: 194 PGGFSPINATASFSPIMSSADAAGRATPGRM--TPGRSPAGRFTPRMSPASPGYAAMSPR 367
P +SP + S+SP ++ A +PG +P SP +P SP SP Y S +
Sbjct: 341 PS-YSP--TSPSYSP---TSPAYSPTSPGYSPTSPSYSPT---SPSYSPTSPSYNPQSAK 391
Query: 368 FGGGLGGGPAGG----AGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
+ L P+ + Y+P SP Y TSP YSP++P+ + SSP Y
Sbjct: 392 YSPSLAYSPSSPRLSPSSPYSPTSPNYSPTSPS--YSPTSPSYSPSSPTY 439
Score = 55.5 bits (132), Expect = 2e-06
Identities = 50/171 (29%), Positives = 80/171 (46%), Gaps = 16/171 (9%)
Frame = +2
Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTY-----AYSPARARTPGGTAFSPAY--T 190
SP+ + Y+P ++ +P+Y AYSP +PG + SP+Y T
Sbjct: 319 SPSYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPAYSPT---SPGYSPTSPSYSPT 374
Query: 191 GPGGFSPINAT-----ASFSPIMSSADAAGRATPGR----MTPGRSPAGRFTPRMSPASP 343
P +SP + + A +SP ++ + ++ R +P +P SP +P SP SP
Sbjct: 375 SPS-YSPTSPSYNPQSAKYSPSLAYSPSSPRLSPSSPYSPTSPNYSPT---SPSYSPTSP 430
Query: 344 GYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSS 496
Y+ SP + +G + Y+P+SP + SP GYSPS P + SS
Sbjct: 431 SYSPSSPTYSPSSPYN-SGVSPDYSPSSPQF---SPSTGYSPSQPGYSPSS 477
[60][TOP]
>UniRef100_B0XAQ9 DNA-directed RNA polymerase n=1 Tax=Culex quinquefasciatus
RepID=B0XAQ9_CULQU
Length = 1874
Score = 70.5 bits (171), Expect = 6e-11
Identities = 53/154 (34%), Positives = 72/154 (46%), Gaps = 5/154 (3%)
Frame = +2
Query: 59 GYTPGREGQRTPGRAFDAAMTPTYAY----SPARARTPGGTAFSP-AYTGPGGFSPINAT 223
G TP TP + + TP Y P TPGG +FSP A + G SP
Sbjct: 1478 GATPSMSPAMTP---WQQSQTPGYGEWSPSGPPSGMTPGGPSFSPSAQSDASGMSP---- 1530
Query: 224 ASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGG 403
S+SP+ S + G + M+P + +P SP+SP YAA SP G
Sbjct: 1531 -SWSPMPGSPSSPGPS----MSPYFPSSPSASPSYSPSSPNYAAASP----------GGA 1575
Query: 404 AGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
+ Y+P SP+Y TSP YSP++P + +SP Y
Sbjct: 1576 SPGYSPTSPSYSPTSP--NYSPTSPRYSPTSPNY 1607
Score = 65.1 bits (157), Expect = 3e-09
Identities = 52/176 (29%), Positives = 79/176 (44%), Gaps = 18/176 (10%)
Frame = +2
Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGT---------AFSPA 184
SP+ P S G TPG ++ + M+P+++ P +PG + + SP+
Sbjct: 1502 SPSGPPS--GMTPGGPSFSPSAQSDASGMSPSWSPMPGSPSSPGPSMSPYFPSSPSASPS 1559
Query: 185 YT---------GPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPA 337
Y+ PGG SP + SP S T R +P +P SP
Sbjct: 1560 YSPSSPNYAAASPGGASP--GYSPTSPSYSPTSPNYSPTSPRYSPTSPNYSPTSPNYSPT 1617
Query: 338 SPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
SP Y+ SP + P+ + AY+P SP+Y TSP YSP++P+ + +SP Y
Sbjct: 1618 SPSYSPTSPLYSPTATYAPS--SPAYSPTSPSYSPTSP---YSPTSPSYSPTSPAY 1668
Score = 60.1 bits (144), Expect = 8e-08
Identities = 43/134 (32%), Positives = 59/134 (44%), Gaps = 5/134 (3%)
Frame = +2
Query: 119 TPTYA-----YSPARARTPGGTAFSPAYTGPGGFSPINATASFSPIMSSADAAGRATPGR 283
+P+Y+ YSP P A+SP T P +SP + + SP S A T
Sbjct: 1618 SPSYSPTSPLYSPTATYAPSSPAYSP--TSP-SYSPTSPYSPTSPSYSPTSPAYSPTSPS 1674
Query: 284 MTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGY 463
+P +P SP SP Y+ SP + Y+P+SP Y TSP Y
Sbjct: 1675 YSPSSPSYSPTSPSYSPTSPSYSPTSPNYTPATPSYSPTSPN-YSPSSPHYSPTSP--SY 1731
Query: 464 SPSTPALAVSSPGY 505
SPS+P + +SP Y
Sbjct: 1732 SPSSPKYSPTSPSY 1745
Score = 59.3 bits (142), Expect = 1e-07
Identities = 55/169 (32%), Positives = 82/169 (48%), Gaps = 13/169 (7%)
Frame = +2
Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTY-AYSPARAR----TPGGTAFSPAY--T 190
SPA + Y+P +P + +PT AYSP +P + SP+Y T
Sbjct: 1638 SPAYSPTSPSYSP-----TSPYSPTSPSYSPTSPAYSPTSPSYSPSSPSYSPTSPSYSPT 1692
Query: 191 GPGGFSPIN-----ATASFSPIMSS-ADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYA 352
P +SP + AT S+SP + + ++ +P +P SP+ +P+ SP SP Y+
Sbjct: 1693 SPS-YSPTSPNYTPATPSYSPTSPNYSPSSPHYSP--TSPSYSPS---SPKYSPTSPSYS 1746
Query: 353 AMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSP 499
SP + GG+ Y PASP Y TSP YSP++P+ + SSP
Sbjct: 1747 PTSPSY---------GGSPQYTPASPQYSPTSP--KYSPTSPSYSPSSP 1784
Score = 56.2 bits (134), Expect = 1e-06
Identities = 53/186 (28%), Positives = 80/186 (43%), Gaps = 28/186 (15%)
Frame = +2
Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAYTGP 196
SP+ + Y+P + A TP+Y+ YSP+ +P + SP+Y+
Sbjct: 1679 SPSYSPTSPSYSPTSPSYSPTSPNYTPA-TPSYSPTSPNYSPS---SPHYSPTSPSYSPS 1734
Query: 197 GG-FSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFG 373
+SP + S+SP S + + TP +P SP +P+ SP SP Y+ SP+
Sbjct: 1735 SPKYSP--TSPSYSPTSPSYGGSPQYTPA--SPQYSPT---SPKYSPTSPSYSPSSPQHS 1787
Query: 374 GGLGGGP----------------------AGGAGAYAPASPAYMATSPGMGYSPSTPALA 487
G G + G+ Y+P SP Y TSP YSPS+PA +
Sbjct: 1788 PGSSGSNFMVNSPTYSPTTARYSPNMSSYSPGSQKYSPTSPVYTPTSP--HYSPSSPAYS 1845
Query: 488 VSSPGY 505
+ GY
Sbjct: 1846 PTGQGY 1851
[61][TOP]
>UniRef100_C8VQG7 DNA-directed RNA polymerase (EC 2.7.7.6)
[Source:UniProtKB/TrEMBL;Acc:Q873Q6] n=2 Tax=Emericella
nidulans RepID=C8VQG7_EMENI
Length = 1745
Score = 70.5 bits (171), Expect = 6e-11
Identities = 54/161 (33%), Positives = 76/161 (47%), Gaps = 26/161 (16%)
Frame = +2
Query: 101 AFDAAMTPTYAYSPAR---ARTPGGTA----------FSPAYTGPGGFSP---------- 211
A+ P +SP R A TPGG FSPA T P G+SP
Sbjct: 1517 AYIGTPDPDSNFSPIRQAGAETPGGFTEYQPSGGFGGFSPAATSPAGYSPSSPFSANPTS 1576
Query: 212 --INATASFSPIMSSADAAGRATPGRMT-PGRSPAGRFTPRMSPASPGYAAMSPRFGGGL 382
+ T+S+SP ++ G +P MT PG SPA +P +P SP Y+ SP +G
Sbjct: 1577 PGYSPTSSYSP---TSPGMGITSPRFMTSPGFSPA---SPSFAPTSPAYSPTSPAYGQAS 1630
Query: 383 GGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
P +Y+P SP + TSP YSP++P+ + +SP +
Sbjct: 1631 PTSP-----SYSPTSPGFSPTSP--NYSPTSPSFSPTSPAF 1664
Score = 65.9 bits (159), Expect = 1e-09
Identities = 56/169 (33%), Positives = 80/169 (47%), Gaps = 11/169 (6%)
Frame = +2
Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGFSP 211
SPA S GY+P P +PT +YSP +PG SP + GFSP
Sbjct: 1555 SPAAT-SPAGYSPSSPFSANPT---SPGYSPTSSYSPT---SPGMGITSPRFMTSPGFSP 1607
Query: 212 INATASFSPIMSS----ADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGG 379
A+ SF+P + + A G+A+P +P SP +P SP SP Y+ SP F
Sbjct: 1608 --ASPSFAPTSPAYSPTSPAYGQASP--TSPSYSPT---SPGFSPTSPNYSPTSPSF--- 1657
Query: 380 LGGGPAGGAGAYAPASPAYMATSPGMG-------YSPSTPALAVSSPGY 505
+ + A++P SP+Y TSP +G SP++P +SPG+
Sbjct: 1658 -----SPTSPAFSPTSPSYSPTSPAIGGARHLSPTSPTSPKYTPTSPGW 1701
Score = 53.5 bits (127), Expect = 8e-06
Identities = 49/158 (31%), Positives = 65/158 (41%), Gaps = 12/158 (7%)
Frame = +2
Query: 14 SARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAY-- 187
S R SP + + P A+ A + +YSP +PG + SP Y
Sbjct: 1596 SPRFMTSPGFSPASPSFAPTSPAYSPTSPAYGQASPTSPSYSPT---SPGFSPTSPNYSP 1652
Query: 188 TGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPG------- 346
T P FSP + +FSP S A G SP +P+ +P SPG
Sbjct: 1653 TSPS-FSP--TSPAFSPTSPSYSPTSPAIGGARH--LSPTSPTSPKYTPTSPGWSPTSPQ 1707
Query: 347 -YAAMSPRFGGG--LGGGPAGGAGAYAPASPAYMATSP 451
Y+ SP F G GGP + Y+P SPA+ TSP
Sbjct: 1708 TYSPTSPNFAGSPTSPGGPT--SPGYSPTSPAFSPTSP 1743
[62][TOP]
>UniRef100_C1EA31 DNA-directed RNA polymerase n=1 Tax=Micromonas sp. RCC299
RepID=C1EA31_9CHLO
Length = 1720
Score = 70.1 bits (170), Expect = 8e-11
Identities = 55/162 (33%), Positives = 73/162 (45%), Gaps = 12/162 (7%)
Frame = +2
Query: 56 RGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTP--GGTAFSPAYTGPG---------G 202
RG TPGREG AM+P++ SP +P FSP T G G
Sbjct: 1477 RGITPGREG----------AMSPSFLLSPTAHMSPFDDSMRFSPQGTDYGSHAGGGQSPG 1526
Query: 203 FSPIN-ATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGG 379
+SP + A + SP S A T +P +P SP SP Y+ SP +
Sbjct: 1527 YSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAY--- 1583
Query: 380 LGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
+ + AY+P SPAY TSP YSP++PA + +SP Y
Sbjct: 1584 -----SPTSPAYSPTSPAYSPTSPA--YSPTSPAYSPTSPAY 1618
Score = 61.6 bits (148), Expect = 3e-08
Identities = 55/171 (32%), Positives = 77/171 (45%), Gaps = 3/171 (1%)
Frame = +2
Query: 2 DAAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTY-AYSPAR-ARTPGGTAF 175
D + A +SP + Y+P A+ +PT AYSP A +P A+
Sbjct: 1514 DYGSHAGGGQSPGYSPTSPAYSPTSPAYSPTSPAY----SPTSPAYSPTSPAYSPTSPAY 1569
Query: 176 SPAYTGPGGFSPIN-ATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYA 352
SP T P +SP + A + SP S A T +P +P SP SP Y+
Sbjct: 1570 SP--TSPA-YSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYS 1626
Query: 353 AMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
SP + + + AY+P SPAY TSP YSP++PA + +SP Y
Sbjct: 1627 PTSPAY--------SPTSPAYSPTSPAYSPTSPA--YSPTSPAYSPTSPQY 1667
[63][TOP]
>UniRef100_C4JY44 DNA-directed RNA polymerase n=1 Tax=Uncinocarpus reesii 1704
RepID=C4JY44_UNCRE
Length = 1747
Score = 70.1 bits (170), Expect = 8e-11
Identities = 59/179 (32%), Positives = 85/179 (47%), Gaps = 11/179 (6%)
Frame = +2
Query: 2 DAAASARIARSP-------AMPESERGYTP-GREGQRTPGRAFDAAMTPTYA-YSPARAR 154
D AA+ + SP + P+ + ++P G+ G TP F P + +SPA AR
Sbjct: 1454 DGAATQYDSGSPMQENMYISSPDPDSQFSPIGQTGSETPA-GFTEYQPPGFGGFSPAGAR 1512
Query: 155 TPGGTAFSPAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSP 334
+PGG +SP SP N + + +PG SP+ + SP
Sbjct: 1513 SPGG-GYSPT-------SPFNTSPT-------------------SPGYSPSSGY----SP 1541
Query: 335 ASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMG--YSPSTPALAVSSPGY 505
SPG SPRF G PA + ++AP SPAY TSPG G SP++P+ + +SPG+
Sbjct: 1542 TSPGMGITSPRFMTSPGFSPA--SPSFAPTSPAYSPTSPGYGQAQSPTSPSYSPTSPGF 1598
Score = 57.4 bits (137), Expect = 5e-07
Identities = 51/165 (30%), Positives = 70/165 (42%), Gaps = 10/165 (6%)
Frame = +2
Query: 14 SARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTY-AYSPARARTPGGTAFSPAY- 187
S R SP + + P + A +PT +YSP +PG + SP+Y
Sbjct: 1550 SPRFMTSPGFSPASPSFAPTSPAYSPTSPGYGQAQSPTSPSYSPT---SPGFSPTSPSYS 1606
Query: 188 -TGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSP 364
T P FSP A+ +FSP S A G SP +P+ +P SPG++ SP
Sbjct: 1607 PTSPS-FSP--ASPAFSPTSPSYSPTSPALGGVTGRHLSPTSPTSPKYTPTSPGWSPTSP 1663
Query: 365 RFGGGLGGGPAGGAGAYAPASPAYMA--TSPGM-----GYSPSTP 478
AY+P SP + TSPG GYSP++P
Sbjct: 1664 --------------DAYSPTSPNFAGSPTSPGWSLLPPGYSPTSP 1694
[64][TOP]
>UniRef100_B7G9I2 DNA-directed RNA polymerase (Fragment) n=1 Tax=Phaeodactylum
tricornutum CCAP 1055/1 RepID=B7G9I2_PHATR
Length = 1706
Score = 69.7 bits (169), Expect = 1e-10
Identities = 56/148 (37%), Positives = 68/148 (45%), Gaps = 3/148 (2%)
Frame = +2
Query: 71 GREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGFSPINATASFSPIMS- 247
G G G A A TP +A SP G A SP G FSP ASFSP S
Sbjct: 1440 GMAGVGGVGGATPYATTP-FAASPM---VGDGAAASPFVDGGAAFSPAVGAASFSPAYSP 1495
Query: 248 -SADAAGRATPGRMTPGRSPA-GRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAP 421
S G G SPA +P+ SP SP Y+ SP + + + AY+P
Sbjct: 1496 DSGSYGSGFASGSYGAGDSPAYSPTSPQYSPTSPAYSPTSPAY--------SPTSPAYSP 1547
Query: 422 ASPAYMATSPGMGYSPSTPALAVSSPGY 505
SPAY TSP YSP++PA + +SP Y
Sbjct: 1548 TSPAYSPTSP--AYSPTSPAYSPTSPAY 1573
Score = 63.9 bits (154), Expect = 6e-09
Identities = 55/164 (33%), Positives = 75/164 (45%), Gaps = 6/164 (3%)
Frame = +2
Query: 32 SPAMPESERGYTPGREGQRTPGRAFDA---AMTPTY-AYSPAR-ARTPGGTAFSPAYTGP 196
SPA + Y+P A+ A +PT AYSP A +P A+SP T P
Sbjct: 1542 SPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSP--TSP 1599
Query: 197 GGFSPIN-ATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFG 373
+SP + A + SP S A T +P +P SP SP Y+ SP +
Sbjct: 1600 A-YSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAY- 1657
Query: 374 GGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
+ + AY+P SPAY TSP YSP++PA + +SP Y
Sbjct: 1658 -------SPTSPAYSPTSPAYSPTSP--AYSPTSPAYSPTSPAY 1692
Score = 63.5 bits (153), Expect = 7e-09
Identities = 59/175 (33%), Positives = 79/175 (45%), Gaps = 8/175 (4%)
Frame = +2
Query: 5 AAASARIARSPAMPESERGYTPGREGQRTPGRAFDA---AMTPTY-AYSPAR-ARTPGGT 169
A+ S SPA + Y+P A+ A +PT AYSP A +P
Sbjct: 1505 ASGSYGAGDSPAYSPTSPQYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSP 1564
Query: 170 AFSPAYTGPGGFSPIN-ATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPG 346
A+SP T P +SP + A + SP S A T +P +P SP SP
Sbjct: 1565 AYSP--TSPA-YSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPA 1621
Query: 347 YAAMSPRFGGGLGGGPAGG--AGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
Y+ SP + PA + AY+P SPAY TSP YSP++PA + +SP Y
Sbjct: 1622 YSPTSPAYSPT---SPAYSPTSPAYSPTSPAYSPTSP--AYSPTSPAYSPTSPAY 1671
Score = 61.2 bits (147), Expect = 4e-08
Identities = 58/178 (32%), Positives = 78/178 (43%), Gaps = 12/178 (6%)
Frame = +2
Query: 8 AASARIARSPAMPESERGYTPGREGQR-----TPGRAFDAAMTPTY-----AYSPAR-AR 154
AAS A SP G+ G G +P + +P Y AYSP A
Sbjct: 1486 AASFSPAYSPDSGSYGSGFASGSYGAGDSPAYSPTSPQYSPTSPAYSPTSPAYSPTSPAY 1545
Query: 155 TPGGTAFSPAYTGPGGFSPIN-ATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMS 331
+P A+SP T P +SP + A + SP S A T +P +P S
Sbjct: 1546 SPTSPAYSP--TSPA-YSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYS 1602
Query: 332 PASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
P SP Y+ SP + + + AY+P SPAY TSP YSP++PA + +SP Y
Sbjct: 1603 PTSPAYSPTSPAY--------SPTSPAYSPTSPAYSPTSP--AYSPTSPAYSPTSPAY 1650
[65][TOP]
>UniRef100_A9TK89 DNA-directed RNA polymerase n=1 Tax=Physcomitrella patens subsp.
patens RepID=A9TK89_PHYPA
Length = 1646
Score = 69.7 bits (169), Expect = 1e-10
Identities = 53/160 (33%), Positives = 79/160 (49%), Gaps = 3/160 (1%)
Frame = +2
Query: 35 PAMPESERGYTPGREGQ-RTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGFSP 211
P+ ++ G TP R TP + M+P+Y SP+ +P A Y G FSP
Sbjct: 1466 PSFEGTDYGMTPSRSPMIGTPHN--EGMMSPSYLLSPSLRASPLSEAQFSPYVGSMPFSP 1523
Query: 212 INATASFSPIMSSADAAGRATPGR--MTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLG 385
++ +SP ++PG ++PG SP +P SP SPGY+ SP
Sbjct: 1524 --SSPGYSP----------SSPGYSPLSPGYSPT---SPGYSPTSPGYSPTSP------- 1561
Query: 386 GGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
G + + +Y+P SP Y TSPG YSP++P+ + +SP Y
Sbjct: 1562 -GYSPTSPSYSPTSPGYSPTSPG--YSPTSPSYSPTSPSY 1598
[66][TOP]
>UniRef100_B8M2Y2 DNA-directed RNA polymerase n=1 Tax=Talaromyces stipitatus ATCC 10500
RepID=B8M2Y2_TALSN
Length = 1755
Score = 69.7 bits (169), Expect = 1e-10
Identities = 60/176 (34%), Positives = 83/176 (47%), Gaps = 8/176 (4%)
Frame = +2
Query: 2 DAAASARIARSPAMPESERGY--TPGREGQRTPGRAFDAAMTPTY-AYSPARARTPGGTA 172
D AA+ SP M E GY TP + + +P R + + +Y P++ G
Sbjct: 1502 DGAATQYDNNSPMM---ENGYIGTPDPDAKFSPIRQAGSETPAGFTSYQPSQ----GLGG 1554
Query: 173 FSPAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYA 352
FSPA PGG+SP SP +S ++PG SP+ + SPASPG +
Sbjct: 1555 FSPAPQSPGGYSPT------SPFNTSP----------VSPGYSPSSSY----SPASPGMS 1594
Query: 353 AMSPRFGGGLGGGPAG-----GAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
SPRF G P+ + AY+P SP+Y SP YSP++P + SSP Y
Sbjct: 1595 ITSPRFVTSPGFSPSSPNFQTTSPAYSPTSPSYQQASP--SYSPTSPRFSPSSPNY 1648
Score = 63.2 bits (152), Expect = 1e-08
Identities = 57/181 (31%), Positives = 79/181 (43%), Gaps = 23/181 (12%)
Frame = +2
Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGFSP 211
SPA P+S GY+P +P +P+ +YSPA +PG + SP + GFSP
Sbjct: 1556 SPA-PQSPGGYSPTSPFNTSP---VSPGYSPSSSYSPA---SPGMSITSPRFVTSPGFSP 1608
Query: 212 IN--------ATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMS-------PASPG 346
+ A + SP A + T R +P +P MS P SP
Sbjct: 1609 SSPNFQTTSPAYSPTSPSYQQASPSYSPTSPRFSPSSPNYSPSSPNMSLSSPAFSPTSPT 1668
Query: 347 YAAMSPRFGGGLGGGPAGGAGAYAPASPA--------YMATSPGMGYSPSTPALAVSSPG 502
Y+ SP GG + + Y+PASPA Y TSP + SP++PA +SP
Sbjct: 1669 YSPTSPAI-GGTRQFSSPTSPKYSPASPAWSPTSPEIYSPTSPNIHGSPTSPARGGTSPS 1727
Query: 503 Y 505
Y
Sbjct: 1728 Y 1728
[67][TOP]
>UniRef100_UPI0000D5670C PREDICTED: similar to GA13798-PA n=1 Tax=Tribolium castaneum
RepID=UPI0000D5670C
Length = 2007
Score = 69.3 bits (168), Expect = 1e-10
Identities = 55/172 (31%), Positives = 82/172 (47%), Gaps = 5/172 (2%)
Frame = +2
Query: 5 AAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTY-AYSPARARTPGGTAFSP 181
+AA+ ++ AM +G TP +P + MTP A+SP+ A G SP
Sbjct: 1500 SAATPSMSPGAAMTPWNQGATPYVGSAWSPHNLMGSGMTPGGPAFSPSAASDASG--MSP 1557
Query: 182 AYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRF----TPRMSPASPGY 349
Y G +SP + + SP M+S P +P SP+ +P M+P SPGY
Sbjct: 1558 GY---GAWSPTPQSPAMSPFMAS--------PHGQSPSYSPSSPSFQPTSPSMTPVSPGY 1606
Query: 350 AAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
+ SP G + + Y+P SP+Y TSP YSP++P+ + +SP Y
Sbjct: 1607 SPTSP--------GYSPTSPNYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1648
Score = 65.9 bits (159), Expect = 1e-09
Identities = 54/153 (35%), Positives = 78/153 (50%), Gaps = 4/153 (2%)
Frame = +2
Query: 59 GYTPGREGQRTPGRAFDAA-MTPTY-AYSPARARTPGGTAFSPAYTGPGGFSPINATASF 232
G TPG +P A DA+ M+P Y A+SP TP A SP P G SP + +S
Sbjct: 1536 GMTPGGPAF-SPSAASDASGMSPGYGAWSP----TPQSPAMSPFMASPHGQSPSYSPSSP 1590
Query: 233 SPIMSSADAAGRATPGRM--TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGA 406
S ++ + +PG +PG SP +P SP SP Y+ SP + + +
Sbjct: 1591 S-FQPTSPSMTPVSPGYSPTSPGYSPT---SPNYSPTSPSYSPTSPSY--------SPTS 1638
Query: 407 GAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
+Y+P SP+Y TSP YSP++P+ + +SP Y
Sbjct: 1639 PSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1669
Score = 58.2 bits (139), Expect = 3e-07
Identities = 50/173 (28%), Positives = 76/173 (43%), Gaps = 13/173 (7%)
Frame = +2
Query: 26 ARSPAMPESERGYTPG--------REGQRTPGRAFDAAMTPTYAYSPA--RARTPGGTAF 175
A SP+ G +PG + +P A +P+Y+ S + +P T
Sbjct: 1543 AFSPSAASDASGMSPGYGAWSPTPQSPAMSPFMASPHGQSPSYSPSSPSFQPTSPSMTPV 1602
Query: 176 SPAY--TGPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPG 346
SP Y T PG +SP + S SP S + T +P +P SP SP
Sbjct: 1603 SPGYSPTSPG-YSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1661
Query: 347 YAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
Y+ SP + + + +Y+P SP+Y TSP YSP++P+ + +SP Y
Sbjct: 1662 YSPTSPSY--------SPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1704
Score = 57.4 bits (137), Expect = 5e-07
Identities = 51/166 (30%), Positives = 75/166 (45%), Gaps = 7/166 (4%)
Frame = +2
Query: 29 RSPAMPE---SERGYTPGREGQRTPGRAFDAAMTPTY-AYSPARARTPGGTAFSPAY--T 190
+SPAM S G +P + +MTP YSP +PG + SP Y T
Sbjct: 1567 QSPAMSPFMASPHGQSPSYSPSSPSFQPTSPSMTPVSPGYSPT---SPGYSPTSPNYSPT 1623
Query: 191 GPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPR 367
P +SP + + S SP S + T +P +P SP SP Y+ SP
Sbjct: 1624 SPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1682
Query: 368 FGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
+ + + +Y+P SP+Y TSP YSP++P+ + +SP Y
Sbjct: 1683 YSP-TSPSYSPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1725
Score = 55.1 bits (131), Expect = 3e-06
Identities = 48/178 (26%), Positives = 73/178 (41%), Gaps = 20/178 (11%)
Frame = +2
Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARAR-TPGGTAFSPAYTG 193
SP+ + Y+P ++ +P+Y+ YSP+ R TP ++SP
Sbjct: 1701 SPSYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPSYSPSSPRYTPASPSYSPTSPS 1759
Query: 194 PGGFSP--INATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPR 367
SP A+ SFSP S+ +P S AG +P+ SP SP Y+ SP
Sbjct: 1760 YSPSSPQYSPASPSFSP---SSPKYSPTSPSYSPTSPSFAGG-SPQYSPTSPSYSPTSPN 1815
Query: 368 FGGGLGGGPAGGAGAYAPASPAYMATSPGMG------------YSPSTPALAVSSPGY 505
+ + Y+P+SP Y +SP YSP++P +SP Y
Sbjct: 1816 YSPSSPQHTPAASSRYSPSSPNYSPSSPSYSPTSPQYSPHSTKYSPTSPTYTPTSPSY 1873
[68][TOP]
>UniRef100_Q99368 DNA-directed RNA polymerase (Fragment) n=1 Tax=Glycine max
RepID=Q99368_SOYBN
Length = 977
Score = 69.3 bits (168), Expect = 1e-10
Identities = 52/151 (34%), Positives = 73/151 (48%), Gaps = 2/151 (1%)
Frame = +2
Query: 59 GYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGFSPINATASFSP 238
G TP EG M+P+Y SP +P A Y G FSP +++ +SP
Sbjct: 684 GATPYHEG---------TMMSPSYLLSPNLRLSPSSDAQFSPYVGGMAFSP-SSSPGYSP 733
Query: 239 IMSSADAAGRATPG--RMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 412
++PG +PG SP +P SP SPGY+ SP + G + + A
Sbjct: 734 ----------SSPGYSPSSPGYSPT---SPGYSPTSPGYSPTSPTYSPS-SPGYSPTSPA 779
Query: 413 YAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
Y+P SP+Y TSP YSP++PA + +SP Y
Sbjct: 780 YSPTSPSYSPTSP--AYSPTSPAYSSTSPAY 808
Score = 62.4 bits (150), Expect = 2e-08
Identities = 55/180 (30%), Positives = 77/180 (42%), Gaps = 22/180 (12%)
Frame = +2
Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAY--TGPG-- 199
SP S GY+P G + +PTY+ S +PG + SPAY T P
Sbjct: 735 SPGYSPSSPGYSPTSPGYSPTSPGYSPT-SPTYSPS-----SPGYSPTSPAYSPTSPSYS 788
Query: 200 ----GFSPIN-ATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSP 364
+SP + A +S SP S + T +P +P SP SP Y+ SP
Sbjct: 789 PTSPAYSPTSPAYSSTSPAYSPTSPSYSPTSPAYSPTSPSYSLTSPSYSPTSPSYSPTSP 848
Query: 365 RFGGGLGGGPAGG--AGAYAPASPAYMATSPG-----------MGYSPSTPALAVSSPGY 505
+ PA + +Y+P SP+Y TSP + YSPS+P L+ +SP Y
Sbjct: 849 SYSPT---SPAYSPTSPSYSPTSPSYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPTSPNY 905
[69][TOP]
>UniRef100_C1MI48 DNA-directed RNA polymerase n=1 Tax=Micromonas pusilla CCMP1545
RepID=C1MI48_9CHLO
Length = 1694
Score = 69.3 bits (168), Expect = 1e-10
Identities = 48/129 (37%), Positives = 64/129 (49%), Gaps = 6/129 (4%)
Frame = +2
Query: 137 SPARARTPGGT-AFSPAY--TGPGGFSPINATASFSPIMSSADAAGRATP---GRMTPGR 298
+PAR TPGG + SP++ + SP + T FSP G +PG
Sbjct: 1476 TPARGTTPGGVGSASPSFLLSPQAHASPFDDTMRFSPYTEGGGGGGGGDGMGFSPTSPGY 1535
Query: 299 SPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTP 478
SP +P SP SP Y+ SP + PA + AY+P SPAY TSP YSP++P
Sbjct: 1536 SPT---SPAYSPTSPAYSPTSPAYSPT---SPAPTSPAYSPTSPAYSPTSP--AYSPTSP 1587
Query: 479 ALAVSSPGY 505
A + +SP Y
Sbjct: 1588 AYSPTSPAY 1596
Score = 59.7 bits (143), Expect = 1e-07
Identities = 51/151 (33%), Positives = 68/151 (45%), Gaps = 2/151 (1%)
Frame = +2
Query: 59 GYTPGREGQRTPGRAFDAAMTPTY-AYSPARARTPGGTAFSPAYTGPGGFSPIN-ATASF 232
G++P G A+ +PT AYSP +P + SPA T P +SP + A +
Sbjct: 1527 GFSPTSPGYSPTSPAY----SPTSPAYSPT---SPAYSPTSPAPTSPA-YSPTSPAYSPT 1578
Query: 233 SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 412
SP S A T +P +P SP SP Y+ SP A
Sbjct: 1579 SPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSP---------------A 1623
Query: 413 YAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
Y+P SPAY TSP YSP++PA + +SP Y
Sbjct: 1624 YSPTSPAYSPTSP--AYSPTSPAYSPTSPQY 1652
[70][TOP]
>UniRef100_B6QAY2 DNA-directed RNA polymerase n=1 Tax=Penicillium marneffei ATCC 18224
RepID=B6QAY2_PENMQ
Length = 1744
Score = 68.9 bits (167), Expect = 2e-10
Identities = 59/180 (32%), Positives = 78/180 (43%), Gaps = 12/180 (6%)
Frame = +2
Query: 2 DAAASARIARSPAMPESERGY--TPGREGQRTPGRAFDAAMTPTYAYSPARARTPGG--- 166
D AA+ SP M E GY TP + + +P R A A TPGG
Sbjct: 1502 DGAATQYDNNSPMM---ENGYIGTPDPDAKFSPIRQ-------------AGAETPGGFTA 1545
Query: 167 -------TAFSPAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPR 325
FSPA PGG+SP SP +S + G + +P +PR
Sbjct: 1546 YQPSGGLGGFSPAPQSPGGYSPT------SPFNTSPVSPGYSPSSSYSPSSPNMSVTSPR 1599
Query: 326 MSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
SPG++ SP F A + AY+P SP++ ATSP YSP++P + SSP Y
Sbjct: 1600 FMSTSPGFSPQSPAF--------AITSPAYSPTSPSFQATSP--SYSPTSPRFSPSSPNY 1649
Score = 60.5 bits (145), Expect = 6e-08
Identities = 58/186 (31%), Positives = 83/186 (44%), Gaps = 28/186 (15%)
Frame = +2
Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAY--TGPGGF 205
SPA P+S GY+P +P +P+ +YSP+ +P + SP + T PG F
Sbjct: 1556 SPA-PQSPGGYSPTSPFNTSP---VSPGYSPSSSYSPS---SPNMSVTSPRFMSTSPG-F 1607
Query: 206 SPIN-ATASFSPIMSSADAAGRATP-----------------GRMTPGRSPAGRFTPRMS 331
SP + A A SP S + +AT +P SPA +P S
Sbjct: 1608 SPQSPAFAITSPAYSPTSPSFQATSPSYSPTSPRFSPSSPNYSPSSPNFSPA---SPAFS 1664
Query: 332 PASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAY--------MATSPGMGYSPSTPALA 487
P+SP Y+ SP GG + + Y+PASP + TSP + SP++PA
Sbjct: 1665 PSSPTYSPTSPAIGGRQFSPSSPSSPKYSPASPGWSPTSPEIYSPTSPNIHGSPTSPARG 1724
Query: 488 VSSPGY 505
+SP Y
Sbjct: 1725 ATSPSY 1730
[71][TOP]
>UniRef100_B9SXC0 DNA-directed RNA polymerase n=1 Tax=Ricinus communis
RepID=B9SXC0_RICCO
Length = 1855
Score = 68.6 bits (166), Expect = 2e-10
Identities = 52/157 (33%), Positives = 76/157 (48%), Gaps = 9/157 (5%)
Frame = +2
Query: 62 YTPGREGQRTPGRA-------FDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGFSPINA 220
Y G + TP R+ D M+P+Y SP+ +P A Y FSP
Sbjct: 1481 YMDGLDFGMTPARSPVSVTPYHDGMMSPSYLLSPSLRLSPTTDAQFSPYVSGMPFSP-TL 1539
Query: 221 TASFSPIMSSADAAGRATPGRM--TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGP 394
+ +SP S+ ++PG +PG SP +P SP SPGY+ SP + G
Sbjct: 1540 SPGYSP---SSPGYSPSSPGYSPTSPGYSPT---SPGYSPTSPGYSPTSPTYSPS-SPGY 1592
Query: 395 AGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
+ + AY+P SP+Y TSP YSP++P+ + +SP Y
Sbjct: 1593 SPTSPAYSPTSPSYSPTSPS--YSPTSPSYSPTSPSY 1627
Score = 57.0 bits (136), Expect = 7e-07
Identities = 51/170 (30%), Positives = 74/170 (43%), Gaps = 12/170 (7%)
Frame = +2
Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTY-----AYSPARARTPGGTAFSPAY--T 190
SP+ + Y+P +P + +P Y AYSP +P + SP+Y T
Sbjct: 1624 SPSYSPTSPSYSPTSPSY-SPTSPVYSPTSPAYSPTSPAYSPT---SPSYSPTSPSYSPT 1679
Query: 191 GPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPR 367
P +SP + + S SP S A T +P +P SP SP Y S +
Sbjct: 1680 SPS-YSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYNPQSAK 1738
Query: 368 FGGGLGGGPAGG----AGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
+ L P+ + Y+P SP Y TSP YSP++P+ + SSP Y
Sbjct: 1739 YSPSLAYSPSSPRLSPSSPYSPTSPNYSPTSPS--YSPTSPSYSPSSPTY 1786
Score = 57.0 bits (136), Expect = 7e-07
Identities = 51/171 (29%), Positives = 78/171 (45%), Gaps = 16/171 (9%)
Frame = +2
Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTY-----AYSPARARTPGGTAFSPAY--T 190
SP+ + Y+P ++ +P+Y AYSP +PG + SP+Y T
Sbjct: 1666 SPSYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPAYSPT---SPGYSPTSPSYSPT 1721
Query: 191 GPGGFSPINAT-----ASFSPIMSSADAAGRATPGR----MTPGRSPAGRFTPRMSPASP 343
P +SP + + A +SP ++ + ++ R +P +P SP +P SP SP
Sbjct: 1722 SPS-YSPTSPSYNPQSAKYSPSLAYSPSSPRLSPSSPYSPTSPNYSPT---SPSYSPTSP 1777
Query: 344 GYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSS 496
Y+ SP + G Y+P+SP Y SP GYSPS P + SS
Sbjct: 1778 SYSPSSPTYSPSSPYNSGVGPD-YSPSSPQY---SPSAGYSPSAPGYSPSS 1824
Score = 56.2 bits (134), Expect = 1e-06
Identities = 48/178 (26%), Positives = 73/178 (41%), Gaps = 22/178 (12%)
Frame = +2
Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPAR-ARTPGGTAFSPAYTG 193
SP S GY+P ++ +P+Y+ YSP + +P ++SP
Sbjct: 1582 SPTYSPSSPGYSPTSPAYSPTSPSYSPT-SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1640
Query: 194 PGGFSPINATAS-----FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAM 358
SP+ + S SP S + T +P +P SP SP Y+
Sbjct: 1641 YSPTSPVYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1700
Query: 359 SPRFGGGLGGGPAGGAGAYAPASPAYMATSPG-----------MGYSPSTPALAVSSP 499
SP + G + + +Y+P SP+Y TSP + YSPS+P L+ SSP
Sbjct: 1701 SPAYSP-TSPGYSPTSPSYSPTSPSYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPSSP 1757
[72][TOP]
>UniRef100_Q0D054 DNA-directed RNA polymerase n=1 Tax=Aspergillus terreus NIH2624
RepID=Q0D054_ASPTN
Length = 1742
Score = 68.6 bits (166), Expect = 2e-10
Identities = 59/175 (33%), Positives = 81/175 (46%), Gaps = 9/175 (5%)
Frame = +2
Query: 2 DAAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSP 181
D AA+ SP M ES TP + +P R A + A GG FSP
Sbjct: 1502 DGAATQYDTGSP-MQESAYIGTPDPDSNFSPIRQAGAESPGGFTEYQPTAGFGGG--FSP 1558
Query: 182 AYTGPGGFSPIN------ATASFSPIMS---SADAAGRATPGRMTPGRSPAGRFTPRMSP 334
A T P G+SP + + S+SP S ++ G +P +PG SPA +P P
Sbjct: 1559 APTSPLGYSPGSPFSGGATSPSYSPSSSYSPTSPGMGITSPRMTSPGFSPA---SPAFGP 1615
Query: 335 ASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSP 499
SP Y+ SP +G P +Y+P SP + TSP YSP++P L+ +SP
Sbjct: 1616 TSPAYSPTSPAYGQASPTSP-----SYSPTSPGFSPTSP--NYSPTSPNLSPASP 1663
Score = 68.2 bits (165), Expect = 3e-10
Identities = 60/167 (35%), Positives = 83/167 (49%), Gaps = 9/167 (5%)
Frame = +2
Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGFSP 211
SPA P S GY+PG G A + +P+ +YSP +PG SP T PG FSP
Sbjct: 1557 SPA-PTSPLGYSPGSPFS---GGATSPSYSPSSSYSPT---SPGMGITSPRMTSPG-FSP 1608
Query: 212 IN-ATASFSPIMS-SADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLG 385
+ A SP S ++ A G+A+P +P SP +P SP SP Y+ SP
Sbjct: 1609 ASPAFGPTSPAYSPTSPAYGQASP--TSPSYSPT---SPGFSPTSPNYSPTSPNLS---- 1659
Query: 386 GGPAGGAGAYAPASPAYMATSPGMG-------YSPSTPALAVSSPGY 505
PA + ++P SP+Y TSP +G SP++P +SPG+
Sbjct: 1660 --PA--SPVFSPTSPSYSPTSPALGAGRNMSPTSPTSPKYTPTSPGW 1702
[73][TOP]
>UniRef100_B2AA31 DNA-directed RNA polymerase n=1 Tax=Podospora anserina
RepID=B2AA31_PODAN
Length = 1748
Score = 68.6 bits (166), Expect = 2e-10
Identities = 53/161 (32%), Positives = 72/161 (44%), Gaps = 9/161 (5%)
Frame = +2
Query: 50 SERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGFSPINATAS 229
+E G PG + G +++ P YA SP R +P T SP G+SP + A
Sbjct: 1534 NESGGPPGFASEYGGGGYGSSSVNP-YATSPGRPTSPFTT--SPTSPFSYGYSPTSPAAG 1590
Query: 230 FSPIMSSADAAGR--ATP--GRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGG--- 388
+SP DA GR ++P +P SP SP SP Y+ SP +
Sbjct: 1591 YSPTSPLIDAGGRFASSPQFSPSSPSFSPTSPMLRPGSPTSPSYSPTSPSYSPASPAATR 1650
Query: 389 --GPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
P A +P SP+Y TSP YSP++PA +SP Y
Sbjct: 1651 HYSPTSPAQFQSPTSPSYSPTSP--SYSPASPAFQATSPSY 1689
[74][TOP]
>UniRef100_C1H3Q4 DNA-directed RNA polymerase n=1 Tax=Paracoccidioides brasiliensis
Pb01 RepID=C1H3Q4_PARBA
Length = 1748
Score = 68.2 bits (165), Expect = 3e-10
Identities = 56/178 (31%), Positives = 83/178 (46%), Gaps = 10/178 (5%)
Frame = +2
Query: 2 DAAASARIARSPAM-------PESERGYTPGRE-GQRTPGRAFDAAMTPTYA--YSPARA 151
D AA+ + SP P+ + ++P R+ G TP F P ++ +SP A
Sbjct: 1505 DGAATPYDSNSPLQDNMYIGTPDPDSAFSPIRQAGSETPA-GFTEYQAPGFSGGFSPHGA 1563
Query: 152 RTPGGTAFSPAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMS 331
R+PGG +SP+ SP N + + +P SP+ + S
Sbjct: 1564 RSPGG-GYSPS-------SPFNTSPT-------------------SPRYSPSSGY----S 1592
Query: 332 PASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
P SPG + SPRF G PA + +AP SPAY TSPG SP++P+ + +SPG+
Sbjct: 1593 PTSPGMSITSPRFMSSPGFSPA--SPVFAPTSPAYSPTSPGYQQSPTSPSYSPTSPGF 1648
Score = 57.8 bits (138), Expect = 4e-07
Identities = 55/193 (28%), Positives = 77/193 (39%), Gaps = 39/193 (20%)
Frame = +2
Query: 44 PESERGYTPGREGQRTPGRAFDAAM-----------TPTYAYSPARARTPGGTAFSPAYT 190
P G++P G R+PG + + +P+ YSP +PG + SP +
Sbjct: 1552 PGFSGGFSP--HGARSPGGGYSPSSPFNTSPTSPRYSPSSGYSPT---SPGMSITSPRFM 1606
Query: 191 GPGGFSPINAT-ASFSPIMSSADAAGRATP-----GRMTPGRSPAGR-----------FT 319
GFSP + A SP S + +P +PG SP +
Sbjct: 1607 SSPGFSPASPVFAPTSPAYSPTSPGYQQSPTSPSYSPTSPGFSPTSPNYSPTSPSFSPAS 1666
Query: 320 PRMSPASPGYAAMSPRFGGGLG---GGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAV 490
P SP SP Y+ SP GG G + + Y P SP + TSP YSP++P +
Sbjct: 1667 PAFSPTSPSYSPTSPALGGSTGRHLSPTSPTSPKYTPTSPGWSPTSPET-YSPTSPNFSG 1725
Query: 491 S--------SPGY 505
S SPGY
Sbjct: 1726 SPTSPGGPTSPGY 1738
[75][TOP]
>UniRef100_C1GHL1 DNA-directed RNA polymerase n=1 Tax=Paracoccidioides brasiliensis
Pb18 RepID=C1GHL1_PARBD
Length = 1746
Score = 68.2 bits (165), Expect = 3e-10
Identities = 56/178 (31%), Positives = 83/178 (46%), Gaps = 10/178 (5%)
Frame = +2
Query: 2 DAAASARIARSPAM-------PESERGYTPGRE-GQRTPGRAFDAAMTPTYA--YSPARA 151
D AA+ + SP P+ + ++P R+ G TP F P ++ +SP A
Sbjct: 1500 DGAATPYDSNSPLQDNMYIGTPDPDSAFSPIRQAGSETPA-GFTEYQAPGFSGGFSPHGA 1558
Query: 152 RTPGGTAFSPAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMS 331
R+PGG +SP+ SP N + + +P SP+ + S
Sbjct: 1559 RSPGG-GYSPS-------SPFNTSPT-------------------SPRYSPSSGY----S 1587
Query: 332 PASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
P SPG + SPRF G PA + +AP SPAY TSPG SP++P+ + +SPG+
Sbjct: 1588 PTSPGMSITSPRFMSSPGFSPA--SPVFAPTSPAYSPTSPGYQQSPTSPSYSPTSPGF 1643
Score = 57.8 bits (138), Expect = 4e-07
Identities = 55/193 (28%), Positives = 77/193 (39%), Gaps = 39/193 (20%)
Frame = +2
Query: 44 PESERGYTPGREGQRTPGRAFDAAM-----------TPTYAYSPARARTPGGTAFSPAYT 190
P G++P G R+PG + + +P+ YSP +PG + SP +
Sbjct: 1547 PGFSGGFSP--HGARSPGGGYSPSSPFNTSPTSPRYSPSSGYSPT---SPGMSITSPRFM 1601
Query: 191 GPGGFSPINAT-ASFSPIMSSADAAGRATP-----GRMTPGRSPAGRF-----------T 319
GFSP + A SP S + +P +PG SP +
Sbjct: 1602 SSPGFSPASPVFAPTSPAYSPTSPGYQQSPTSPSYSPTSPGFSPTSPSYSPTSPSFSPAS 1661
Query: 320 PRMSPASPGYAAMSPRFGGGLG---GGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAV 490
P SP SP Y+ SP GG G + + Y P SP + TSP YSP++P +
Sbjct: 1662 PAFSPTSPSYSPTSPALGGSTGRHLSPTSPTSPKYTPTSPGWSPTSPET-YSPTSPNFSG 1720
Query: 491 S--------SPGY 505
S SPGY
Sbjct: 1721 SPTSPGGPTSPGY 1733
[76][TOP]
>UniRef100_C0SE75 DNA-directed RNA polymerase n=1 Tax=Paracoccidioides brasiliensis
Pb03 RepID=C0SE75_PARBP
Length = 2106
Score = 68.2 bits (165), Expect = 3e-10
Identities = 56/178 (31%), Positives = 83/178 (46%), Gaps = 10/178 (5%)
Frame = +2
Query: 2 DAAASARIARSPAM-------PESERGYTPGRE-GQRTPGRAFDAAMTPTYA--YSPARA 151
D AA+ + SP P+ + ++P R+ G TP F P ++ +SP A
Sbjct: 1500 DGAATPYDSNSPLQDNMYIGTPDPDSAFSPIRQAGSETPA-GFTEYQAPGFSGGFSPHGA 1558
Query: 152 RTPGGTAFSPAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMS 331
R+PGG +SP+ SP N + + +P SP+ + S
Sbjct: 1559 RSPGG-GYSPS-------SPFNTSPT-------------------SPRYSPSSGY----S 1587
Query: 332 PASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
P SPG + SPRF G PA + +AP SPAY TSPG SP++P+ + +SPG+
Sbjct: 1588 PTSPGMSITSPRFMSSPGFSPA--SPVFAPTSPAYSPTSPGYQQSPTSPSYSPTSPGF 1643
Score = 57.8 bits (138), Expect = 4e-07
Identities = 55/193 (28%), Positives = 77/193 (39%), Gaps = 39/193 (20%)
Frame = +2
Query: 44 PESERGYTPGREGQRTPGRAFDAAM-----------TPTYAYSPARARTPGGTAFSPAYT 190
P G++P G R+PG + + +P+ YSP +PG + SP +
Sbjct: 1547 PGFSGGFSP--HGARSPGGGYSPSSPFNTSPTSPRYSPSSGYSPT---SPGMSITSPRFM 1601
Query: 191 GPGGFSPINAT-ASFSPIMSSADAAGRATP-----GRMTPGRSPAGRF-----------T 319
GFSP + A SP S + +P +PG SP +
Sbjct: 1602 SSPGFSPASPVFAPTSPAYSPTSPGYQQSPTSPSYSPTSPGFSPTSPSYSPTSPSFSPAS 1661
Query: 320 PRMSPASPGYAAMSPRFGGGLG---GGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAV 490
P SP SP Y+ SP GG G + + Y P SP + TSP YSP++P +
Sbjct: 1662 PAFSPTSPSYSPTSPALGGSTGRHLSPTSPTSPKYTPTSPGWSPTSPET-YSPTSPNFSG 1720
Query: 491 S--------SPGY 505
S SPGY
Sbjct: 1721 SPTSPGGPTSPGY 1733
[77][TOP]
>UniRef100_UPI00005A0B1E PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide
A isoform 9 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B1E
Length = 1851
Score = 67.8 bits (164), Expect = 4e-10
Identities = 48/152 (31%), Positives = 71/152 (46%), Gaps = 3/152 (1%)
Frame = +2
Query: 59 GYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAY--TGPGGFSPINATAS- 229
GY+P TPG + Y SP A +P + SPAY PGG++P + + S
Sbjct: 1497 GYSPA--WSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPGGYTPQSPSYSP 1554
Query: 230 FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAG 409
SP S + T +P +P SP SP Y+ SP + + +
Sbjct: 1555 TSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSY--------SPTSP 1606
Query: 410 AYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
+Y+P SP+Y TSP YSP++P+ + +SP Y
Sbjct: 1607 SYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1636
Score = 63.5 bits (153), Expect = 7e-09
Identities = 54/163 (33%), Positives = 77/163 (47%), Gaps = 5/163 (3%)
Frame = +2
Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTY-AYSPARARTPGG-TAFSPAY--TGPG 199
SP P Y P +PG A + +PT AY P R+PGG T SP+Y T P
Sbjct: 1508 SPGSPGPSSPYIP------SPGGAMSPSYSPTSPAYEP---RSPGGYTPQSPSYSPTSPS 1558
Query: 200 GFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGG 376
+SP + + S SP S + T +P +P SP SP Y+ SP +
Sbjct: 1559 -YSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1617
Query: 377 GLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
+ + +Y+P SP+Y TSP YSP++P+ + +SP Y
Sbjct: 1618 -TSPSYSPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1657
Score = 58.5 bits (140), Expect = 2e-07
Identities = 38/105 (36%), Positives = 54/105 (51%)
Frame = +2
Query: 191 GPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRF 370
G GFSP + ++SP S + G ++P +PG G +P SP SP Y SP
Sbjct: 1490 GRDGFSP-GYSPAWSPTPGSPGSPGPSSPYIPSPG----GAMSPSYSPTSPAYEPRSP-- 1542
Query: 371 GGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
GG + +Y+P SP+Y TSP YSP++P + +SP Y
Sbjct: 1543 -----GGYTPQSPSYSPTSPSYSPTSP--SYSPTSPNYSPTSPSY 1580
Score = 54.7 bits (130), Expect = 3e-06
Identities = 51/167 (30%), Positives = 75/167 (44%), Gaps = 9/167 (5%)
Frame = +2
Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARAR-TPGGTAFSPAYTG 193
SP+ + Y+P R TP + +P+Y+ YSP + TP ++SP+
Sbjct: 1675 SPSYSPTSPNYSPSRPNY-TPTSPSYSPTSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPE 1733
Query: 194 PGGFSPINATAS--FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPR 367
SP + S +SP S + T TP SP +P SP SP Y SP+
Sbjct: 1734 YTPTSPKYSPTSPKYSPT-SPKYSPTSPTYSPTTPKYSPT---SPTYSPTSPVYTPTSPK 1789
Query: 368 FGGGLGGGPAGGAGAYAPASPAYMATSP-GMGYSPSTPALAVSSPGY 505
+ + + Y+P SP Y TSP G YSP++P + +SP Y
Sbjct: 1790 YSP-TSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTY 1835
[78][TOP]
>UniRef100_UPI00005A0B1C PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide
A isoform 8 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B1C
Length = 1719
Score = 67.8 bits (164), Expect = 4e-10
Identities = 48/152 (31%), Positives = 71/152 (46%), Gaps = 3/152 (1%)
Frame = +2
Query: 59 GYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAY--TGPGGFSPINATAS- 229
GY+P TPG + Y SP A +P + SPAY PGG++P + + S
Sbjct: 1490 GYSPA--WSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPGGYTPQSPSYSP 1547
Query: 230 FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAG 409
SP S + T +P +P SP SP Y+ SP + + +
Sbjct: 1548 TSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSY--------SPTSP 1599
Query: 410 AYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
+Y+P SP+Y TSP YSP++P+ + +SP Y
Sbjct: 1600 SYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1629
Score = 58.2 bits (139), Expect = 3e-07
Identities = 40/116 (34%), Positives = 57/116 (49%)
Frame = +2
Query: 158 PGGTAFSPAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPA 337
P + FSP G+SP ++SP S + G ++P +PG G +P SP
Sbjct: 1482 PDASGFSP------GYSP-----AWSPTPGSPGSPGPSSPYIPSPG----GAMSPSYSPT 1526
Query: 338 SPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
SP Y SP GG + +Y+P SP+Y TSP YSP++P + +SP Y
Sbjct: 1527 SPAYEPRSP-------GGYTPQSPSYSPTSPSYSPTSP--SYSPTSPNYSPTSPSY 1573
Score = 53.9 bits (128), Expect = 6e-06
Identities = 50/190 (26%), Positives = 77/190 (40%), Gaps = 30/190 (15%)
Frame = +2
Query: 26 ARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARAR----TPGGTAFS 178
A SP+ + Y P G TP + +P+Y+ YSP +P + S
Sbjct: 1518 AMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTS 1577
Query: 179 PAY--TGPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGY 349
P+Y T P +SP + + S SP S + T +P +P SP SP Y
Sbjct: 1578 PSYSPTSPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1636
Query: 350 AAMSPRFG------GGLGGGPAGGAGAYAPASPAYMATSPGMG------------YSPST 475
+ SP + + + +Y+P SP+Y TSP YSP++
Sbjct: 1637 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPSRPNYTPTSPSYSPTS 1696
Query: 476 PALAVSSPGY 505
P+ + +SP Y
Sbjct: 1697 PSYSPTSPNY 1706
[79][TOP]
>UniRef100_UPI00005A0B1B PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide
A isoform 7 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B1B
Length = 1858
Score = 67.8 bits (164), Expect = 4e-10
Identities = 48/152 (31%), Positives = 71/152 (46%), Gaps = 3/152 (1%)
Frame = +2
Query: 59 GYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAY--TGPGGFSPINATAS- 229
GY+P TPG + Y SP A +P + SPAY PGG++P + + S
Sbjct: 1490 GYSPA--WSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPGGYTPQSPSYSP 1547
Query: 230 FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAG 409
SP S + T +P +P SP SP Y+ SP + + +
Sbjct: 1548 TSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSY--------SPTSP 1599
Query: 410 AYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
+Y+P SP+Y TSP YSP++P+ + +SP Y
Sbjct: 1600 SYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1629
Score = 58.2 bits (139), Expect = 3e-07
Identities = 40/116 (34%), Positives = 57/116 (49%)
Frame = +2
Query: 158 PGGTAFSPAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPA 337
P + FSP G+SP ++SP S + G ++P +PG G +P SP
Sbjct: 1482 PDASGFSP------GYSP-----AWSPTPGSPGSPGPSSPYIPSPG----GAMSPSYSPT 1526
Query: 338 SPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
SP Y SP GG + +Y+P SP+Y TSP YSP++P + +SP Y
Sbjct: 1527 SPAYEPRSP-------GGYTPQSPSYSPTSPSYSPTSP--SYSPTSPNYSPTSPSY 1573
Score = 55.1 bits (131), Expect = 3e-06
Identities = 48/166 (28%), Positives = 74/166 (44%), Gaps = 8/166 (4%)
Frame = +2
Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY--T 190
SP+ + Y+P ++ +P+Y+ YSP +P + SP+Y T
Sbjct: 1591 SPSYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPSYSPT---SPSYSPTSPSYSPT 1646
Query: 191 GPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPR 367
P +SP + + S SP S + T +P R +P SP SP Y+ SP
Sbjct: 1647 SPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPSRPNYTPTSPSYSPTSPSYSPTSPN 1705
Query: 368 FGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
+ + + + +Y+P SP Y TSP YSPS+P +SP Y
Sbjct: 1706 Y-TPMSPNYSPTSPSYSPTSPKYTPTSP--SYSPSSPEYTPTSPKY 1748
Score = 54.3 bits (129), Expect = 4e-06
Identities = 47/165 (28%), Positives = 71/165 (43%), Gaps = 7/165 (4%)
Frame = +2
Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARAR-TPGGTAFSPAYTG 193
SP+ + Y+P ++ +P+Y+ YSP+R TP ++SP T
Sbjct: 1640 SPSYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPNYSPSRPNYTPTSPSYSP--TS 1696
Query: 194 PGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRF 370
P +SP + + SP S + T + TP +P +P SP Y+ SP+
Sbjct: 1697 PS-YSPTSPNYTPMSPNYSPTSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYSPTSPK- 1754
Query: 371 GGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
Y+P SP Y TSP YSP+TP + +SP Y
Sbjct: 1755 --------------YSPTSPKYSPTSP--TYSPTTPKYSPTSPTY 1783
[80][TOP]
>UniRef100_Q4QZ03 DNA-directed RNA polymerase (Fragment) n=1 Tax=Solanum tuberosum
RepID=Q4QZ03_SOLTU
Length = 361
Score = 67.8 bits (164), Expect = 4e-10
Identities = 60/172 (34%), Positives = 81/172 (47%), Gaps = 21/172 (12%)
Frame = +2
Query: 53 ERGYTPGREG-QRTPGRAFDAAMTPTYAYSPARARTP----------GGTAFSPAYTGPG 199
E G TPGR TP D M+P Y SP +P GG AFSP T
Sbjct: 66 EFGMTPGRSPISGTPYH--DGMMSPNYLLSPNMRMSPITDAQFSPYVGGMAFSP--TSSP 121
Query: 200 GFSPINATASFSPIMSSADAAGRA--TPGRM--TPGRSPAGRFTPRMSPASPGYAAMSPR 367
G+SP + S S S + G + +PG +PG SP +P SP+SPGY+ SP
Sbjct: 122 GYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPT---SPTYSPSSPGYSPTSPA 178
Query: 368 FG------GGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
+ + + +Y+P SP+Y TSP YSP++PA + +SP Y
Sbjct: 179 YSPTSPSYSPTSPSYSPTSSSYSPTSPSYSPTSP--IYSPTSPAYSPTSPAY 228
Score = 55.8 bits (133), Expect = 2e-06
Identities = 53/176 (30%), Positives = 77/176 (43%), Gaps = 18/176 (10%)
Frame = +2
Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTY-----AYSPAR-ARTPGGTAFSPAYTG 193
SP+ + Y+P +P + +P Y AYSP A +P ++SP
Sbjct: 190 SPSYSPTSSSYSPTSPSY-SPTSPIYSPTSPAYSPTSPAYSPTSPAYSPTLPSYSPTLPS 248
Query: 194 PGGFSPINA--TASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSP- 364
SP + + S+SP S A +PG SP +P SP SP Y+ SP
Sbjct: 249 YSPTSPSYSPTSPSYSPTSPSYSPTFPAY-SPTSPGYSPT---SPSYSPTSPSYSPTSPS 304
Query: 365 -----RFGGGLGGGPAGG----AGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
R+ L P + Y+P+SP+Y TSP YSP++P+ + SSP Y
Sbjct: 305 YNPSARYSPSLAYSPTSPKLSPSSPYSPSSPSYSPTSPS--YSPTSPSYSPSSPTY 358
[81][TOP]
>UniRef100_C5GKA7 DNA-directed RNA polymerase n=2 Tax=Ajellomyces dermatitidis
RepID=C5GKA7_AJEDR
Length = 1746
Score = 67.8 bits (164), Expect = 4e-10
Identities = 54/164 (32%), Positives = 74/164 (45%), Gaps = 15/164 (9%)
Frame = +2
Query: 59 GYTPGREGQRTPGRAF--DAAMTPTYAYSPARARTPGGTAFSPAYTGPGGFSPINATASF 232
G G T G+ D A TP + SP R G+ + P + A F
Sbjct: 1481 GVVSSNAGLMTDGKGLLGDGAATPYDSSSPLRDNMYIGSPDPDSNFSPIRQAGSETPAGF 1540
Query: 233 SPIMSSADAAGRATPGRMTPGR--SPAGRF-----TPRMSPAS------PGYAAMSPRFG 373
+ S + G + G +PG SP F +PR SP+S PG + SPRF
Sbjct: 1541 TEYQPSGFSGGFSPHGARSPGGGYSPTSPFNTSPTSPRYSPSSGYSPTSPGMSITSPRFM 1600
Query: 374 GGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
G PA + A+AP SPAY TSPG SP++P+ + +SPG+
Sbjct: 1601 SSPGFSPA--SPAFAPTSPAYSPTSPGYQQSPTSPSYSPTSPGF 1642
Score = 63.9 bits (154), Expect = 6e-09
Identities = 53/170 (31%), Positives = 77/170 (45%), Gaps = 21/170 (12%)
Frame = +2
Query: 59 GYTPGREGQRTPGRAFDAAM-----------TPTYAYSPARARTPGGTAFSPAYTGPGGF 205
G++P G R+PG + +P+ YSP +PG + SP + GF
Sbjct: 1551 GFSP--HGARSPGGGYSPTSPFNTSPTSPRYSPSSGYSPT---SPGMSITSPRFMSSPGF 1605
Query: 206 SPIN-ATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGL 382
SP + A A SP S + +P +P SP +P SP SP Y+ SP F
Sbjct: 1606 SPASPAFAPTSPAYSPTSPGYQQSP--TSPSYSPT---SPGFSPTSPSYSPTSPSFS--- 1657
Query: 383 GGGPAGGAGAYAPASPAYMATSPGMGY---------SPSTPALAVSSPGY 505
PA + A++P SP+Y TSP +G SP++P +SPG+
Sbjct: 1658 ---PA--SPAFSPTSPSYSPTSPALGISTGRHLSPTSPTSPKYTPTSPGW 1702
Score = 60.8 bits (146), Expect = 5e-08
Identities = 54/178 (30%), Positives = 77/178 (43%), Gaps = 10/178 (5%)
Frame = +2
Query: 2 DAAASARIARSP-------AMPESERGYTPGRE-GQRTPGRAFDAAMTPTYA--YSPARA 151
D AA+ + SP P+ + ++P R+ G TP F ++ +SP A
Sbjct: 1499 DGAATPYDSSSPLRDNMYIGSPDPDSNFSPIRQAGSETPA-GFTEYQPSGFSGGFSPHGA 1557
Query: 152 RTPGGTAFSPAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMS 331
R+PGG +SP SP N T+ SP S + +PG SP +P S
Sbjct: 1558 RSPGG-GYSPT-------SPFN-TSPTSPRYSPSSGYSPTSPGMSIT--SPRFMSSPGFS 1606
Query: 332 PASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
PASP +A SP AY+P SP Y + YSP++P + +SP Y
Sbjct: 1607 PASPAFAPTSP---------------AYSPTSPGYQQSPTSPSYSPTSPGFSPTSPSY 1649
[82][TOP]
>UniRef100_Q9BIT5 Major ampullate spidroin 2 (Fragment) n=1 Tax=Nephila inaurata
madagascariensis RepID=Q9BIT5_9ARAC
Length = 563
Score = 67.4 bits (163), Expect = 5e-10
Identities = 58/182 (31%), Positives = 78/182 (42%), Gaps = 16/182 (8%)
Frame = +2
Query: 5 AAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPA 184
AAA+A A P + GY PG++G G + + A P + PGG + P
Sbjct: 258 AAAAAAAAAGPGQ-QGPGGYGPGQQGPGQQGPSGPGSAAAAAAAGPG-PQGPGG--YGPG 313
Query: 185 YTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPG------RSPAGRFTPRMSPASPG 346
GPGG+ P S S+A AA A PG+ PG + P+G + P+ PG
Sbjct: 314 QQGPGGYGP-------SGPGSAAAAAAAAGPGQQGPGGYGPGQQRPSGYGPGQQGPSGPG 366
Query: 347 YAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGM-GYSP---------STPALAVSS 496
AA + G G G GAY P+ P A + G+ GY P S A A +
Sbjct: 367 SAAAAAAAGPG-----QQGPGAYGPSGPGSAAAAAGLGGYGPAQQGPSGAGSAAAAAAAG 421
Query: 497 PG 502
PG
Sbjct: 422 PG 423
Score = 65.1 bits (157), Expect = 3e-09
Identities = 57/164 (34%), Positives = 73/164 (44%), Gaps = 16/164 (9%)
Frame = +2
Query: 59 GYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGFSPINATASFSP 238
GY PG++G PG A AA A P + + PGG + P GPGG+ P S P
Sbjct: 205 GYGPGQQGPSGPGSAAAAA-----AAGPGQ-QGPGG--YGPGQQGPGGYGPGQQGPS-GP 255
Query: 239 IMSSADAAGRATPGRMTPGRSPAGRFTP-RMSPASPGYAAMS------PRFGGGLGGGPA 397
++A AA A PG+ PG G+ P + P+ PG AA + P+ GG G G
Sbjct: 256 GSAAAAAAAAAGPGQQGPGGYGPGQQGPGQQGPSGPGSAAAAAAAGPGPQGPGGYGPGQQ 315
Query: 398 GGAGAYAPASP-----AYMATSPGM----GYSPSTPALAVSSPG 502
G G Y P+ P A A PG GY P + PG
Sbjct: 316 -GPGGYGPSGPGSAAAAAAAAGPGQQGPGGYGPGQQRPSGYGPG 358
Score = 60.8 bits (146), Expect = 5e-08
Identities = 56/170 (32%), Positives = 72/170 (42%), Gaps = 22/170 (12%)
Frame = +2
Query: 59 GYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGFSPINATASFSP 238
GY PG++G PG A AA A + + + PGG + P GPGG+ P S
Sbjct: 86 GYGPGQQGPSGPGSAASAA-----AAAGSGQQGPGG--YGPGQQGPGGYGPGQQGPSGPG 138
Query: 239 IMSSADAA--GRATPGRMTPGRSPAGRFTP-RMSPASPGYAAMSPRFGG----GLGG--- 388
++A AA G+ PG PG+ G + P + P+ PG AA + G G GG
Sbjct: 139 SAAAAAAAGPGQQGPGGYGPGQQGPGGYGPGQQGPSGPGSAAAAAAAAGPGQQGPGGYGP 198
Query: 389 ---GPAG-GAGAYAPASP----AYMATSPGM----GYSPSTPALAVSSPG 502
GP G G G P+ P A A PG GY P PG
Sbjct: 199 GQQGPGGYGPGQQGPSGPGSAAAAAAAGPGQQGPGGYGPGQQGPGGYGPG 248
Score = 60.1 bits (144), Expect = 8e-08
Identities = 49/152 (32%), Positives = 65/152 (42%), Gaps = 4/152 (2%)
Frame = +2
Query: 59 GYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGFSPINATASFSP 238
GY PG++G PG A AA A P + + PGG + P GPGG+ P S
Sbjct: 126 GYGPGQQGPSGPGSAAAAA-----AAGPGQ-QGPGG--YGPGQQGPGGYGPGQQGPSGPG 177
Query: 239 IMSSADAA---GRATPGRMTPGRSPAGRFTP-RMSPASPGYAAMSPRFGGGLGGGPAGGA 406
++A AA G+ PG PG+ G + P + P+ PG AA + G G G G
Sbjct: 178 SAAAAAAAAGPGQQGPGGYGPGQQGPGGYGPGQQGPSGPGSAAAAAAAGPGQQGPGGYGP 237
Query: 407 GAYAPASPAYMATSPGMGYSPSTPALAVSSPG 502
G P P S + A A + PG
Sbjct: 238 GQQGPGGYGPGQQGPSGPGSAAAAAAAAAGPG 269
Score = 56.2 bits (134), Expect = 1e-06
Identities = 56/181 (30%), Positives = 71/181 (39%), Gaps = 33/181 (18%)
Frame = +2
Query: 59 GYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGFSP-INATASFS 235
GY PG++G PG A AA A P + + PGG + P GPGG+ P + +
Sbjct: 34 GYGPGQQGPSGPGSA--AAAAAAAAAGPGQ-QGPGG--YGPGPQGPGGYGPGQQGPSGYG 88
Query: 236 PIM-------SSADAAGRATPGRMTPG------RSPAGRFTPRMSPASPGYAAMSPRFG- 373
P S+A AA A G+ PG + P G + P+ PG AA + G
Sbjct: 89 PGQQGPSGPGSAASAAAAAGSGQQGPGGYGPGQQGPGGYGPGQQGPSGPGSAAAAAAAGP 148
Query: 374 -----GGLGGGPAG----GAGAYAPASP-----AYMATSPGM----GYSPSTPALAVSSP 499
GG G G G G G P+ P A A PG GY P P
Sbjct: 149 GQQGPGGYGPGQQGPGGYGPGQQGPSGPGSAAAAAAAAGPGQQGPGGYGPGQQGPGGYGP 208
Query: 500 G 502
G
Sbjct: 209 G 209
Score = 55.5 bits (132), Expect = 2e-06
Identities = 56/175 (32%), Positives = 70/175 (40%), Gaps = 11/175 (6%)
Frame = +2
Query: 5 AAASARIARSPAM-------PESER--GYTPGREGQRTPGRAFDAAMTPTYAYSPARART 157
+AA+A A P P +R GY PG++G PG A AA P A
Sbjct: 327 SAAAAAAAAGPGQQGPGGYGPGQQRPSGYGPGQQGPSGPGSAAAAAAAGPGQQGPG-AYG 385
Query: 158 PGGTAFSPAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPA 337
P G + A G GG+ P S + ++A AAG P G + P+
Sbjct: 386 PSGPGSAAAAAGLGGYGPAQQGPSGAGSAAAAAAAG------------PGGYGPVQQGPS 433
Query: 338 SPGYAAMSPRFGGGLGGGPA-GGAGAYAPASPAYMATSPG-MGYSPSTPALAVSS 496
PG AA G G GPA G Y P S A A + G GY P A A +S
Sbjct: 434 GPGSAA------GPGGYGPAQQGPARYGPGSAAAAAAAAGSAGYGPGPQASAAAS 482
[83][TOP]
>UniRef100_B7PJA3 DNA-directed RNA polymerase (Fragment) n=1 Tax=Ixodes scapularis
RepID=B7PJA3_IXOSC
Length = 1937
Score = 67.4 bits (163), Expect = 5e-10
Identities = 51/161 (31%), Positives = 77/161 (47%), Gaps = 5/161 (3%)
Frame = +2
Query: 38 AMPESERGYTPGREGQRTPGRA--FDAAMTPTYAYSPARARTPGGTA---FSPAYTGPGG 202
A P G++PG TPG A +A + YSPA A G + SPA +
Sbjct: 1524 ATPSYGSGWSPGLGSGMTPGAAGFSPSAASDASGYSPASAGLSPGWSPQPGSPASSPASP 1583
Query: 203 FSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGL 382
+ P + ++SP S+ A ++P MTP +P SP SP Y+ SP +
Sbjct: 1584 YIPSPVSPNYSP---SSPAYAPSSPS-MTPASPTYSPTSPSYSPTSPSYSPTSPNY---- 1635
Query: 383 GGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
+ + +Y+P SP+Y TSP YSP++P+ + +SP Y
Sbjct: 1636 ----SPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1670
Score = 57.8 bits (138), Expect = 4e-07
Identities = 50/164 (30%), Positives = 72/164 (43%), Gaps = 4/164 (2%)
Frame = +2
Query: 26 ARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTY-AYSPARARTPGGTAFSPAY--TGP 196
A SPA P +P +MTP YSP +P + SP+Y T P
Sbjct: 1577 ASSPASPYIPSPVSPNYSPSSPAYAPSSPSMTPASPTYSPT---SPSYSPTSPSYSPTSP 1633
Query: 197 GGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFG 373
+SP + + S SP S + T +P +P SP SP Y+ SP +
Sbjct: 1634 N-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY- 1691
Query: 374 GGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
+ + +Y+P SP+Y TSP YSP++P+ + SSP Y
Sbjct: 1692 -------SPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPSSPNY 1726
Score = 56.6 bits (135), Expect = 9e-07
Identities = 48/166 (28%), Positives = 76/166 (45%), Gaps = 8/166 (4%)
Frame = +2
Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY--T 190
SP+ + Y+P ++ +P+Y+ Y+PA +P + SP+Y T
Sbjct: 1688 SPSYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSPSSPNYTPA---SPSYSPTSPSYSPT 1743
Query: 191 GPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPR 367
P +SP + + S SP S + +PG +P+ SP SP Y+ SP
Sbjct: 1744 SPS-YSPTSPSYSPTSPSYSPSSPNYSPQSPSYSPGSPSYSPSSPKYSPTSPSYSPTSPS 1802
Query: 368 FGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
+ + G+ Y P+SP Y TSP YSP++P+ + SSP Y
Sbjct: 1803 Y--------SPGSPQYTPSSPKYSPTSP--TYSPTSPSYSPSSPKY 1838
Score = 56.6 bits (135), Expect = 9e-07
Identities = 51/172 (29%), Positives = 73/172 (42%), Gaps = 14/172 (8%)
Frame = +2
Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARAR-TPGGTAFSPAYTG 193
SP Y+PG +P + +P+Y+ YSP + TP +SP T
Sbjct: 1765 SPNYSPQSPSYSPGSPSY-SPSSPKYSPTSPSYSPTSPSYSPGSPQYTPSSPKYSP--TS 1821
Query: 194 PGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRF 370
P +SP + + S SP S T TP +P+ SP SP Y+ SP++
Sbjct: 1822 PT-YSPTSPSYSPSSPKYSPTSPKYSPTSPTYTPSSPKYSPTSPQYSPTSPQYSPTSPKY 1880
Query: 371 G------GGLGGGPAGGAGAYAPASPAYMATSP-GMGYSPSTPALAVSSPGY 505
+ + Y+P SP Y TSP G YSP++P + SSP Y
Sbjct: 1881 SPTSPKYSPTSPTYSPTSPKYSPTSPTYSPTSPKGSSYSPTSPGYSPSSPTY 1932
Score = 55.1 bits (131), Expect = 3e-06
Identities = 48/160 (30%), Positives = 76/160 (47%), Gaps = 4/160 (2%)
Frame = +2
Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGFSP 211
SP+ + Y+PG Q TP + +PTY+ + + + +P +SP T P +SP
Sbjct: 1793 SPSYSPTSPSYSPGSP-QYTPSSPKYSPTSPTYSPT-SPSYSPSSPKYSP--TSPK-YSP 1847
Query: 212 INATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGG 388
+ T + SP S T + +P +P+ SP SP Y+ SP++
Sbjct: 1848 TSPTYTPSSPKYSPTSPQYSPTSPQYSPTSPKYSPTSPKYSPTSPTYSPTSPKY------ 1901
Query: 389 GPAGGAGAYAPASP---AYMATSPGMGYSPSTPALAVSSP 499
+ + Y+P SP +Y TSPG YSPS+P + +SP
Sbjct: 1902 --SPTSPTYSPTSPKGSSYSPTSPG--YSPSSPTYSPTSP 1937
[84][TOP]
>UniRef100_Q6CBQ3 DNA-directed RNA polymerase n=1 Tax=Yarrowia lipolytica
RepID=Q6CBQ3_YARLI
Length = 1750
Score = 67.4 bits (163), Expect = 5e-10
Identities = 45/137 (32%), Positives = 66/137 (48%)
Frame = +2
Query: 95 GRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGFSPINATASFSPIMSSADAAGRAT 274
G +A TPT +S A +PG A SP+Y+ SP + SP S + A AT
Sbjct: 1531 GDGSGSAYTPTSPFSSFGAASPGFAATSPSYSPS---SPGMGLGAASPSFSPSSPAFAAT 1587
Query: 275 PGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPG 454
+P +P SP SP Y+ SP + + + +Y+P SP+Y TSP
Sbjct: 1588 SPSYSPSSPSYSPTSPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSP- 1638
Query: 455 MGYSPSTPALAVSSPGY 505
YSP++P+ + +SP Y
Sbjct: 1639 -SYSPTSPSYSPTSPSY 1654
Score = 64.3 bits (155), Expect = 4e-09
Identities = 51/175 (29%), Positives = 81/175 (46%), Gaps = 8/175 (4%)
Frame = +2
Query: 5 AAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGT 169
AA+ + SPA + Y+P ++ +P+Y+ YSP +P +
Sbjct: 1572 AASPSFSPSSPAFAATSPSYSPSSPSYSPTSPSYSPT-SPSYSPTSPSYSPT---SPSYS 1627
Query: 170 AFSPAY--TGPGGFSPINATASFSPIMSSADAAGRA-TPGRMTPGRSPAGRFTPRMSPAS 340
SP+Y T P +SP + S+SP S + +P +P +P SP S
Sbjct: 1628 PTSPSYSPTSPS-YSP--TSPSYSPTSPSYSPTSPSYSPTSYSPTSPSYSPTSPSYSPTS 1684
Query: 341 PGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
P Y+ SP + AG + +Y+P SP+Y TSP YSP++P+ + +SP Y
Sbjct: 1685 PSYSPTSPSYSPSSPKFNAGASTSYSPTSPSYSPTSPS--YSPTSPSYSPTSPSY 1737
Score = 62.4 bits (150), Expect = 2e-08
Identities = 53/163 (32%), Positives = 75/163 (46%), Gaps = 3/163 (1%)
Frame = +2
Query: 26 ARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARART-PGGTAFSPAY--TGP 196
A SP + Y+P +PG AA SPA A T P + SP+Y T P
Sbjct: 1549 AASPGFAATSPSYSPS-----SPGMGLGAASPSFSPSSPAFAATSPSYSPSSPSYSPTSP 1603
Query: 197 GGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGG 376
+SP + S+SP S + +P SP +P SP SP Y+ SP +
Sbjct: 1604 S-YSP--TSPSYSPTSPSYSPTSPSY-SPTSPSYSPT---SPSYSPTSPSYSPTSPSYSP 1656
Query: 377 GLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
P+ +Y+P SP+Y TSP YSP++P+ + +SP Y
Sbjct: 1657 T---SPSYSPTSYSPTSPSYSPTSPS--YSPTSPSYSPTSPSY 1694
Score = 59.7 bits (143), Expect = 1e-07
Identities = 47/175 (26%), Positives = 76/175 (43%), Gaps = 12/175 (6%)
Frame = +2
Query: 8 AASARIARSPAMPESERGYTPGREGQRTPGRAFD------AAMTPTYA-----YSPAR-A 151
++ A A SP+ S Y+P ++ + +P+Y+ YSP +
Sbjct: 1580 SSPAFAATSPSYSPSSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1639
Query: 152 RTPGGTAFSPAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMS 331
+P ++SP SP + S+SP S +P SP +P S
Sbjct: 1640 YSPTSPSYSPTSPSYSPTSPSYSPTSYSPTSPSYSPT--------SPSYSPT---SPSYS 1688
Query: 332 PASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSS 496
P SP Y+ SP+F G + + +Y+P SP+Y TSP YSP++P+ + S
Sbjct: 1689 PTSPSYSPSSPKFNAGASTSYSPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPGS 1741
[85][TOP]
>UniRef100_Q99366 DNA-directed RNA polymerase (Fragment) n=1 Tax=Glycine max
RepID=Q99366_SOYBN
Length = 625
Score = 67.0 bits (162), Expect = 7e-10
Identities = 51/157 (32%), Positives = 75/157 (47%), Gaps = 9/157 (5%)
Frame = +2
Query: 62 YTPGREGQRTPGRA-------FDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGFSPINA 220
Y G + TP R+ + M+P+Y SP +P A Y G FSP +
Sbjct: 308 YMDGLDFGMTPARSPISGTPYHEGLMSPSYLLSPNLRLSPTTDAQFSPYVGGMAFSP-TS 366
Query: 221 TASFSPIMSSADAAGRATPGRM--TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGP 394
+ +SP ++PG +PG SP +P SP SPGY+ SP + G
Sbjct: 367 SPGYSP----------SSPGYSPSSPGYSPT---SPGYSPTSPGYSPTSPTYSPS-SPGY 412
Query: 395 AGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
+ + AY+P SP+Y TSP YSP++P+ + +SP Y
Sbjct: 413 SPTSPAYSPTSPSYSPTSPS--YSPTSPSYSPTSPSY 447
Score = 58.2 bits (139), Expect = 3e-07
Identities = 52/169 (30%), Positives = 74/169 (43%), Gaps = 11/169 (6%)
Frame = +2
Query: 32 SPAMPESERGYTPGREGQRTPGRAFDA---AMTPTY-AYSPARARTPGGTAFSPAY--TG 193
SP+ + Y+P A+ A +PT AYSP +P + SP+Y T
Sbjct: 437 SPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPT---SPSYSPTSPSYSPTS 493
Query: 194 PGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRF 370
P +SP + + S SP S A T +P +P SP SP Y S ++
Sbjct: 494 PS-YSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYNPQSAKY 552
Query: 371 GGGLGGGPAGG----AGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
L P+ + Y+P SP Y TSP YSP++P+ + SSP Y
Sbjct: 553 SPSLAYSPSSPRLSPSSPYSPTSPNYSPTSPS--YSPTSPSYSPSSPTY 599
Score = 57.4 bits (137), Expect = 5e-07
Identities = 51/175 (29%), Positives = 76/175 (43%), Gaps = 19/175 (10%)
Frame = +2
Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY--T 190
SP S GY+P ++ +P+Y+ YSP +P + SP+Y T
Sbjct: 402 SPTYSPSSPGYSPTSPAYSPTSPSYSPT-SPSYSPTSPSYSPT---SPSYSPTSPSYSPT 457
Query: 191 GPGGFSPIN-ATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPR 367
P +SP + A + SP S + T +P +P SP SP Y+ SP
Sbjct: 458 SPA-YSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPA 516
Query: 368 FGGGLGGGPAGGAGAYAPASPAYMATSPG-----------MGYSPSTPALAVSSP 499
+ G + + +Y+P SP+Y TSP + YSPS+P L+ SSP
Sbjct: 517 YSP-TSPGYSPTSPSYSPTSPSYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPSSP 570
[86][TOP]
>UniRef100_A8IRZ2 DNA-directed RNA polymerase n=1 Tax=Chlamydomonas reinhardtii
RepID=A8IRZ2_CHLRE
Length = 1789
Score = 67.0 bits (162), Expect = 7e-10
Identities = 56/157 (35%), Positives = 73/157 (46%), Gaps = 10/157 (6%)
Frame = +2
Query: 65 TPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGFSPINATA---SFS 235
TP R RTPG M+P++ SP + G + FSP + PG FSP + S
Sbjct: 1496 TPSRSPARTPG-----PMSPSHLLSPMHSPFVG-SGFSPMH--PGAFSPAHGGGVGGPMS 1547
Query: 236 PIMSSADAAGRATPGRMTPGR------SPAGRFT-PRMSPASPGYAAMSPRFGGGLGGGP 394
P S T R +P SPA T P SP SP Y+ SP +
Sbjct: 1548 PGYSPTSPGYSPTSPRYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAY-------- 1599
Query: 395 AGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
+ + AY+P SPAY TSP YSP++PA + +SP Y
Sbjct: 1600 SPTSPAYSPTSPAYSPTSP--AYSPTSPAYSPTSPAY 1634
Score = 63.2 bits (152), Expect = 1e-08
Identities = 42/95 (44%), Positives = 50/95 (52%), Gaps = 17/95 (17%)
Frame = +2
Query: 272 TPGRMTPGRSPA---GRFTPR--------------MSPASPGYAAMSPRFGGGLGGGPAG 400
TPGRMTP RSPA G +P SP PG A SP GGG+GG +
Sbjct: 1491 TPGRMTPSRSPARTPGPMSPSHLLSPMHSPFVGSGFSPMHPG--AFSPAHGGGVGGPMSP 1548
Query: 401 GAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
G Y+P SP Y TSP YSP++PA + +SP Y
Sbjct: 1549 G---YSPTSPGYSPTSP--RYSPTSPAYSPTSPAY 1578
Score = 60.8 bits (146), Expect = 5e-08
Identities = 52/167 (31%), Positives = 75/167 (44%), Gaps = 18/167 (10%)
Frame = +2
Query: 59 GYTPGREGQRTP--GRAFDAAMTPTYA-----YSPARAR-TPGGTAFSPAYTGPGGFSPI 214
G++P G +P G M+P Y+ YSP R +P A+SP T P +SP
Sbjct: 1525 GFSPMHPGAFSPAHGGGVGGPMSPGYSPTSPGYSPTSPRYSPTSPAYSP--TSPA-YSPT 1581
Query: 215 N-ATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGG 391
+ A + SP S A T +P +P SP SP Y+ SP +
Sbjct: 1582 SPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAY------- 1634
Query: 392 PAGGAGAYAPASPAYMATSPGMG---------YSPSTPALAVSSPGY 505
+ + AY+P SPAY TSP YSP++P+++ +SP Y
Sbjct: 1635 -SPTSPAYSPTSPAYSPTSPAYSPAYSPTSPQYSPTSPSMSPTSPRY 1680
[87][TOP]
>UniRef100_Q9HGZ5 DNA-directed RNA polymerase n=2 Tax=Aspergillus RepID=Q9HGZ5_ASPOR
Length = 1748
Score = 67.0 bits (162), Expect = 7e-10
Identities = 50/166 (30%), Positives = 78/166 (46%), Gaps = 12/166 (7%)
Frame = +2
Query: 44 PESERGYTPGRE-GQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGFSPINA 220
P+ E ++P R+ G +PG + T + G FSPA T P G+SP +
Sbjct: 1522 PDPESNFSPIRQAGAESPGGFTEYQPTGGF-----------GGGFSPAATSPAGYSPSSP 1570
Query: 221 TAS--FSPIMSSADAAGRATPG---------RMTPGRSPAGRFTPRMSPASPGYAAMSPR 367
++ SP S + + +PG +PG SPA +P +P SP Y+ SP
Sbjct: 1571 FSANPTSPGYSPSSSYSPTSPGMAMTSPRFSMTSPGFSPA---SPSFAPTSPAYSPTSPA 1627
Query: 368 FGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
+G P +Y+P SP + TSP YSP++P+ + +SP +
Sbjct: 1628 YGQASPTSP-----SYSPTSPGFSPTSP--NYSPTSPSFSPASPAF 1666
Score = 58.2 bits (139), Expect = 3e-07
Identities = 63/194 (32%), Positives = 81/194 (41%), Gaps = 36/194 (18%)
Frame = +2
Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAY--TGPGGF 205
SPA S GY+P P +P+ +YSP +PG SP + T PG F
Sbjct: 1556 SPAAT-SPAGYSPSSPFSANPT---SPGYSPSSSYSPT---SPGMAMTSPRFSMTSPG-F 1607
Query: 206 SPINATASFSPIMSS----ADAAGRATP-----GRMTPGRSPAGR-----------FTPR 325
SP A+ SF+P + + A G+A+P +PG SP +P
Sbjct: 1608 SP--ASPSFAPTSPAYSPTSPAYGQASPTSPSYSPTSPGFSPTSPNYSPTSPSFSPASPA 1665
Query: 326 MSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMG------YSPSTPALA 487
SP SP Y+ SP GG A +P SP Y TSPG YSP++P A
Sbjct: 1666 FSPTSPSYSPTSPAIGGA-----ARHLSPTSPTSPKYTPTSPGWSPTSPQTYSPTSPNFA 1720
Query: 488 VS--------SPGY 505
S SPGY
Sbjct: 1721 GSPTSPGGPTSPGY 1734
[88][TOP]
>UniRef100_UPI0001985649 PREDICTED: similar to NRPB1 (RNA POLYMERASE II LARGE SUBUNIT); DNA
binding / DNA-directed RNA polymerase n=1 Tax=Vitis
vinifera RepID=UPI0001985649
Length = 1848
Score = 66.6 bits (161), Expect = 9e-10
Identities = 56/169 (33%), Positives = 80/169 (47%), Gaps = 21/169 (12%)
Frame = +2
Query: 62 YTPGREGQRTPGRA-------FDAAMTPTYAYSPARARTP----------GGTAFSPAYT 190
Y G + TP R+ D M+P Y SP +P GG AFSP T
Sbjct: 1481 YMEGLDFGMTPSRSPITGTPYHDGMMSPNYLLSPNLRLSPITDAQFSPYVGGMAFSP--T 1538
Query: 191 GPGGFSPINATASFSPIMSSADAAGRA--TPGRM--TPGRSPAGRFTPRMSPASPGYAAM 358
G+SP + S S S + G + +PG +PG SP +P SP+SPGY+
Sbjct: 1539 SSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPT---SPTYSPSSPGYSPT 1595
Query: 359 SPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
SP + + + +Y+P SP+Y TSP YSP++P+ + +SP Y
Sbjct: 1596 SPAY--------SPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1634
Score = 57.8 bits (138), Expect = 4e-07
Identities = 51/171 (29%), Positives = 81/171 (47%), Gaps = 16/171 (9%)
Frame = +2
Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTY-----AYSPARARTPGGTAFSPAY--T 190
SP+ + Y+P ++ +P+Y AYSP +PG + SP+Y T
Sbjct: 1673 SPSYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPAYSPT---SPGYSPTSPSYSPT 1728
Query: 191 GPGGFSPIN-----ATASFSPIMSSADAAGRATPGR----MTPGRSPAGRFTPRMSPASP 343
P +SP + ++A +SP ++ + ++ R +P +P SP +P SP SP
Sbjct: 1729 SPS-YSPTSPSYNPSSAKYSPSLAYSPSSPRLSPSSPYSPTSPNYSPT---SPSYSPTSP 1784
Query: 344 GYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSS 496
Y+ SP + +G + Y+P+SP Y SP GYSPS P + SS
Sbjct: 1785 SYSPASPTYSP-TSPYNSGVSPDYSPSSPQY---SPSAGYSPSAPGYSPSS 1831
Score = 56.2 bits (134), Expect = 1e-06
Identities = 49/168 (29%), Positives = 76/168 (45%), Gaps = 12/168 (7%)
Frame = +2
Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY--T 190
SP+ + Y+P ++ +P+Y+ YSP +P + SPAY T
Sbjct: 1610 SPSYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPVYSPT---SPSYSPTSPAYSPT 1665
Query: 191 GPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPR 367
P +SP + + S SP S + T +P +P SP SPGY+ SP
Sbjct: 1666 SPA-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPS 1724
Query: 368 FGGGLGGGPAGGAGAYAPASPAYMATS----PGMGYSPSTPALAVSSP 499
+ + + +Y+P SP+Y +S P + YSPS+P L+ SSP
Sbjct: 1725 Y--------SPTSPSYSPTSPSYNPSSAKYSPSLAYSPSSPRLSPSSP 1764
Score = 54.7 bits (130), Expect = 3e-06
Identities = 46/139 (33%), Positives = 65/139 (46%), Gaps = 8/139 (5%)
Frame = +2
Query: 113 AMTPTY-AYSPARARTPGGTAFSPAY--TGPGGFSPINATAS-FSPIMSSADAAGRATPG 280
A +PT AYSP +P + SP+Y T P +SP + + S SP S A T
Sbjct: 1661 AYSPTSPAYSPT---SPSYSPTSPSYSPTSPS-YSPTSPSYSPTSPSYSPTSPAYSPTSP 1716
Query: 281 RMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGG----AGAYAPASPAYMATS 448
+P +P SP SP Y S ++ L P+ + Y+P SP Y TS
Sbjct: 1717 GYSPTSPSYSPTSPSYSPTSPSYNPSSAKYSPSLAYSPSSPRLSPSSPYSPTSPNYSPTS 1776
Query: 449 PGMGYSPSTPALAVSSPGY 505
P YSP++P+ + +SP Y
Sbjct: 1777 PS--YSPTSPSYSPASPTY 1793
[89][TOP]
>UniRef100_Q5WMZ9 DNA-directed RNA polymerase n=1 Tax=Oryza sativa Japonica Group
RepID=Q5WMZ9_ORYSJ
Length = 1741
Score = 66.6 bits (161), Expect = 9e-10
Identities = 48/159 (30%), Positives = 76/159 (47%), Gaps = 1/159 (0%)
Frame = +2
Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPAR-ARTPGGTAFSPAYTGPGGFS 208
SP + Y P +++ +P+Y+YSP + +P ++S + T P +S
Sbjct: 1583 SPVYSPTSPVYNPTSSAYSPTSPSYNPT-SPSYSYSPTSPSYSPTSPSYSYSPTSPS-YS 1640
Query: 209 PINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGG 388
P + + ++SP S +P SP +P SP SP Y+ SP +
Sbjct: 1641 PTSPSYNYSPTSPSYSPT--------SPSYSPT---SPSYSPTSPSYSPTSPSY------ 1683
Query: 389 GPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
+ + AY+P SPAY TSP GYSP++P+ + SSP Y
Sbjct: 1684 --SPTSSAYSPTSPAYSPTSP--GYSPTSPSYSPSSPSY 1718
Score = 53.5 bits (127), Expect = 8e-06
Identities = 46/160 (28%), Positives = 69/160 (43%), Gaps = 6/160 (3%)
Frame = +2
Query: 44 PESERGYTPGREGQRTPGRAFDAAMTP----TYAYSPARARTPGGTA--FSPAYTGPGGF 205
P S GY+P TPG + +P + YSPA + T+ + P
Sbjct: 1496 PSSGGGYSPSPP-VCTPGPGSFTSSSPYNPVSPFYSPASPLSCPLTSPSYVPTSLPHSPT 1554
Query: 206 SPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLG 385
SPI + S PI S + T +P +P +P S Y+ SP +
Sbjct: 1555 SPIYSATS--PIYSPSSPIYSPTSLSYSPTSPVYSPTSPVYNPTSSAYSPTSPSYN---- 1608
Query: 386 GGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
P + +Y+P SP+Y TSP YSP++P+ + +SP Y
Sbjct: 1609 --PTSPSYSYSPTSPSYSPTSPSYSYSPTSPSYSPTSPSY 1646
[90][TOP]
>UniRef100_Q0DKN9 DNA-directed RNA polymerase n=1 Tax=Oryza sativa Japonica Group
RepID=Q0DKN9_ORYSJ
Length = 1834
Score = 66.6 bits (161), Expect = 9e-10
Identities = 48/159 (30%), Positives = 76/159 (47%), Gaps = 1/159 (0%)
Frame = +2
Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPAR-ARTPGGTAFSPAYTGPGGFS 208
SP + Y P +++ +P+Y+YSP + +P ++S + T P +S
Sbjct: 1636 SPVYSPTSPVYNPTSSAYSPTSPSYNPT-SPSYSYSPTSPSYSPTSPSYSYSPTSPS-YS 1693
Query: 209 PINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGG 388
P + + ++SP S +P SP +P SP SP Y+ SP +
Sbjct: 1694 PTSPSYNYSPTSPSYSPT--------SPSYSPT---SPSYSPTSPSYSPTSPSY------ 1736
Query: 389 GPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
+ + AY+P SPAY TSP GYSP++P+ + SSP Y
Sbjct: 1737 --SPTSSAYSPTSPAYSPTSP--GYSPTSPSYSPSSPSY 1771
Score = 53.5 bits (127), Expect = 8e-06
Identities = 46/160 (28%), Positives = 69/160 (43%), Gaps = 6/160 (3%)
Frame = +2
Query: 44 PESERGYTPGREGQRTPGRAFDAAMTP----TYAYSPARARTPGGTA--FSPAYTGPGGF 205
P S GY+P TPG + +P + YSPA + T+ + P
Sbjct: 1549 PSSGGGYSPSPP-VCTPGPGSFTSSSPYNPVSPFYSPASPLSCPLTSPSYVPTSLPHSPT 1607
Query: 206 SPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLG 385
SPI + S PI S + T +P +P +P S Y+ SP +
Sbjct: 1608 SPIYSATS--PIYSPSSPIYSPTSLSYSPTSPVYSPTSPVYNPTSSAYSPTSPSYN---- 1661
Query: 386 GGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
P + +Y+P SP+Y TSP YSP++P+ + +SP Y
Sbjct: 1662 --PTSPSYSYSPTSPSYSPTSPSYSYSPTSPSYSPTSPSY 1699
[91][TOP]
>UniRef100_A7NVN7 DNA-directed RNA polymerase n=1 Tax=Vitis vinifera RepID=A7NVN7_VITVI
Length = 1010
Score = 66.6 bits (161), Expect = 9e-10
Identities = 56/169 (33%), Positives = 80/169 (47%), Gaps = 21/169 (12%)
Frame = +2
Query: 62 YTPGREGQRTPGRA-------FDAAMTPTYAYSPARARTP----------GGTAFSPAYT 190
Y G + TP R+ D M+P Y SP +P GG AFSP T
Sbjct: 718 YMEGLDFGMTPSRSPITGTPYHDGMMSPNYLLSPNLRLSPITDAQFSPYVGGMAFSP--T 775
Query: 191 GPGGFSPINATASFSPIMSSADAAGRA--TPGRM--TPGRSPAGRFTPRMSPASPGYAAM 358
G+SP + S S S + G + +PG +PG SP +P SP+SPGY+
Sbjct: 776 SSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPT---SPTYSPSSPGYSPT 832
Query: 359 SPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
SP + + + +Y+P SP+Y TSP YSP++P+ + +SP Y
Sbjct: 833 SPAY--------SPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 871
Score = 62.0 bits (149), Expect = 2e-08
Identities = 50/166 (30%), Positives = 77/166 (46%), Gaps = 8/166 (4%)
Frame = +2
Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY--T 190
SP + Y+P G A+ +P+Y+ YSP +P + SP+Y T
Sbjct: 812 SPGYSPTSPTYSPSSPGYSPTSPAYSPT-SPSYSPTSPSYSPT---SPSYSPTSPSYSPT 867
Query: 191 GPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPR 367
P +SP + + S SP+ S + T +P +P SP SP Y+ SP
Sbjct: 868 SPS-YSPTSPSYSPTSPVYSPTSPSYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPS 926
Query: 368 FGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
+ + + +Y+P SPAY TSPG YSP++P+ + +SP Y
Sbjct: 927 YSP-TSPSYSPTSPSYSPTSPAYSPTSPG--YSPTSPSYSPTSPSY 969
Score = 56.2 bits (134), Expect = 1e-06
Identities = 49/168 (29%), Positives = 76/168 (45%), Gaps = 12/168 (7%)
Frame = +2
Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY--T 190
SP+ + Y+P ++ +P+Y+ YSP +P + SPAY T
Sbjct: 847 SPSYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPVYSPT---SPSYSPTSPAYSPT 902
Query: 191 GPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPR 367
P +SP + + S SP S + T +P +P SP SPGY+ SP
Sbjct: 903 SPA-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPS 961
Query: 368 FGGGLGGGPAGGAGAYAPASPAYMATS----PGMGYSPSTPALAVSSP 499
+ + + +Y+P SP+Y +S P + YSPS+P L+ SSP
Sbjct: 962 Y--------SPTSPSYSPTSPSYNPSSAKYSPSLAYSPSSPRLSPSSP 1001
[92][TOP]
>UniRef100_B2W4S0 DNA-directed RNA polymerase n=1 Tax=Pyrenophora tritici-repentis
Pt-1C-BFP RepID=B2W4S0_PYRTR
Length = 1742
Score = 66.6 bits (161), Expect = 9e-10
Identities = 53/169 (31%), Positives = 74/169 (43%), Gaps = 12/169 (7%)
Frame = +2
Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-------YSPARARTPGGTAFSPAYT 190
SP + GY+P G +P A A +P Y YSP R T+ S + T
Sbjct: 1574 SPGFSPTSPGYSPTSPGTASPRFA---ATSPGYMASPTSPHYSPTSPRYGSPTSPSYSPT 1630
Query: 191 GPGGFSPIN-----ATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAA 355
P G+SP + + ++SP +S G AT +P +P+ SP SP Y A
Sbjct: 1631 SPAGYSPTSPQYSPTSPNYSP--TSPTFMGGATSPAYSPTSPQYSPTSPQYSPTSPQYQA 1688
Query: 356 MSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPG 502
S R P Y+P SP Y TSP +SP++P + +SPG
Sbjct: 1689 TSDRRSPTSPTSPQ-----YSPTSPRYSPTSPAGSFSPTSPRYSPTSPG 1732
Score = 60.8 bits (146), Expect = 5e-08
Identities = 57/158 (36%), Positives = 77/158 (48%), Gaps = 12/158 (7%)
Frame = +2
Query: 59 GYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAY--TGPGGFSPINATAS- 229
G++P +G R+PG + M+P + SP +PG + SP Y T PG SP A S
Sbjct: 1547 GFSP-YDGGRSPGGSGFTGMSPGFT-SPV---SPGFSPTSPGYSPTSPGTASPRFAATSP 1601
Query: 230 ------FSPIMS-SADAAGRATPGRMTPGRSPAG--RFTPRMSPASPGYAAMSPRFGGGL 382
SP S ++ G T +P SPAG +P+ SP SP Y+ SP F GG
Sbjct: 1602 GYMASPTSPHYSPTSPRYGSPTSPSYSP-TSPAGYSPTSPQYSPTSPNYSPTSPTFMGG- 1659
Query: 383 GGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSS 496
+ AY+P SP Y TSP YSP++P +S
Sbjct: 1660 -----ATSPAYSPTSPQYSPTSP--QYSPTSPQYQATS 1690
Score = 55.5 bits (132), Expect = 2e-06
Identities = 41/125 (32%), Positives = 60/125 (48%), Gaps = 7/125 (5%)
Frame = +2
Query: 152 RTPGGTAF---SPAYTGP--GGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRF 316
R+PGG+ F SP +T P GFSP + S + +++ +PG M SP
Sbjct: 1555 RSPGGSGFTGMSPGFTSPVSPGFSPTSPGYSPTSPGTASPRFAATSPGYMASPTSPHYSP 1614
Query: 317 T-PRM-SPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAV 490
T PR SP SP Y+ SP + + Y+P SP +M + YSP++P +
Sbjct: 1615 TSPRYGSPTSPSYSPTSPAGYSPTSPQYSPTSPNYSPTSPTFMGGATSPAYSPTSPQYSP 1674
Query: 491 SSPGY 505
+SP Y
Sbjct: 1675 TSPQY 1679
[93][TOP]
>UniRef100_Q692G1 Major ampullate spidroin 2 (Fragment) n=1 Tax=Nephila clavipes
RepID=Q692G1_NEPCL
Length = 332
Score = 66.2 bits (160), Expect = 1e-09
Identities = 57/165 (34%), Positives = 73/165 (44%), Gaps = 2/165 (1%)
Frame = +2
Query: 8 AASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAY 187
+ASA A + + GY PG++G PG A AA A PGG + P
Sbjct: 94 SASAAAAAAGPGQQGPGGYGPGQQGPSGPGSASAAAA----------AAGPGG--YGPGQ 141
Query: 188 TGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPR 367
GPGG++P S ++A AA RA PG G PA + P+ PG AA +
Sbjct: 142 QGPGGYAPGQQGPSGPGSAAAAAAAARAGPG----GYGPA-----QQGPSGPGIAASAAS 192
Query: 368 FGGGLGGGPA-GGAGAYAPASPAYMATSPG-MGYSPSTPALAVSS 496
G G G GPA G Y P S + G GY P + A A +S
Sbjct: 193 AGPG-GYGPAQQGPAGYGPGSAVAASAGAGSAGYGPGSQASAAAS 236
Score = 60.5 bits (145), Expect = 6e-08
Identities = 51/160 (31%), Positives = 66/160 (41%), Gaps = 12/160 (7%)
Frame = +2
Query: 59 GYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGFSPINATASFSP 238
GY PG++G PG A AA A A PGG + P GPGG+ P S +
Sbjct: 4 GYRPGQQGPSGPGSAAAAA---------AAAAGPGG--YGPGQQGPGGYGPGQQGPSGAG 52
Query: 239 IMSSADAA------------GRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGL 382
++A AA G+ PG PG+ G + P + A+ A + GG
Sbjct: 53 SAAAAAAAGPGQQGLGGYGPGQQGPGGYGPGQQGPGGYGPGSASAAAAAAGPGQQGPGGY 112
Query: 383 GGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPG 502
G G G +G AS A A PG GY P +PG
Sbjct: 113 GPGQQGPSGP-GSASAAAAAAGPG-GYGPGQQGPGGYAPG 150
Score = 57.4 bits (137), Expect = 5e-07
Identities = 55/176 (31%), Positives = 73/176 (41%), Gaps = 10/176 (5%)
Frame = +2
Query: 5 AAASARIARSPAM----PESERGYTPGREGQRTPGRAFDAAMTPTY-----AYSPARART 157
AAA+A A P + GY PG++G G A AA Y P + +
Sbjct: 18 AAAAAAAAAGPGGYGPGQQGPGGYGPGQQGPSGAGSAAAAAAAGPGQQGLGGYGPGQ-QG 76
Query: 158 PGGTAFSPAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPA 337
PGG + P GPGG+ P +A+A AA A PG+ PG G + P+
Sbjct: 77 PGG--YGPGQQGPGGYGPGSASA----------AAAAAGPGQQGPGGYGPG----QQGPS 120
Query: 338 SPGYAAMSPRFGGGLGGGPA-GGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPG 502
PG A+ + G G GP G G YAP G G + + A A + PG
Sbjct: 121 GPGSASAAAAAAGPGGYGPGQQGPGGYAPGQQG----PSGPGSAAAAAAAARAGPG 172
[94][TOP]
>UniRef100_B3RM26 DNA-directed RNA polymerase n=1 Tax=Trichoplax adhaerens
RepID=B3RM26_TRIAD
Length = 1784
Score = 66.2 bits (160), Expect = 1e-09
Identities = 53/176 (30%), Positives = 80/176 (45%), Gaps = 22/176 (12%)
Frame = +2
Query: 44 PESERGYTPGREGQRTPGRAF---DAAMTPTYA---YSPARARTPGGTAFSPAYTGPGGF 205
P E YTPG G TPG A A P+++ YSP + P + SP + P
Sbjct: 1504 PSYEGPYTPGMGGGMTPGAAGFSPSGASEPSFSPASYSPNWSPGPAASPGSPGPSSPYMQ 1563
Query: 206 SPINAT--ASFSPIMSSADA--------------AGRATPGRMTPGRSPAGRFTPRMSPA 337
SP + T +F I+ + ++ + T R +P +PR SP
Sbjct: 1564 SPTDITFYVAFQSIILTVESKLLTDFSKYSPTSPSYSPTSPRYSPTSPSYSPTSPRYSPT 1623
Query: 338 SPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
SP Y+ SPR+ + + +Y+P SP+Y TSP YSP++P+ + +SP Y
Sbjct: 1624 SPSYSPTSPRY--------SPTSPSYSPTSPSYSPTSP--RYSPTSPSYSPTSPSY 1669
Score = 63.2 bits (152), Expect = 1e-08
Identities = 53/170 (31%), Positives = 74/170 (43%), Gaps = 25/170 (14%)
Frame = +2
Query: 71 GREGQRTPGRAFDAAMT-PTYA--YSPARA--RTPGGTAFSPAYTGPGGFSPINATASFS 235
G Q TP +D+++T P+Y Y+P TPG FSP+ FSP AS+S
Sbjct: 1489 GMSPQMTP---WDSSLTTPSYEGPYTPGMGGGMTPGAAGFSPSGASEPSFSP----ASYS 1541
Query: 236 PIMSSADAAGRATPGRMTPGRSPAGRFT--------------------PRMSPASPGYAA 355
P S AA +PG +P T + SP SP Y+
Sbjct: 1542 PNWSPGPAASPGSPGPSSPYMQSPTDITFYVAFQSIILTVESKLLTDFSKYSPTSPSYSP 1601
Query: 356 MSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
SPR+ + + +Y+P SP Y TSP YSP++P + +SP Y
Sbjct: 1602 TSPRY--------SPTSPSYSPTSPRYSPTSP--SYSPTSPRYSPTSPSY 1641
Score = 59.3 bits (142), Expect = 1e-07
Identities = 50/165 (30%), Positives = 76/165 (46%), Gaps = 7/165 (4%)
Frame = +2
Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARAR-TPGGTAFSPAYTG 193
SP+ + Y+P + +P + +P+Y+ YSP R +P ++SP T
Sbjct: 1638 SPSYSPTSPSYSP-TSPRYSPTSPSYSPTSPSYSPTSPKYSPTSPRYSPTSPSYSP--TS 1694
Query: 194 PGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRF 370
P +SP + + S SP S + T R +P +PR SP SP Y+ SPR
Sbjct: 1695 PS-YSPTSPSYSPTSPSYSPTSPSYSPTSPRYSPTSPSYSPTSPRYSPTSPSYSPTSPR- 1752
Query: 371 GGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
Y+P SP+Y TSP YSP++P+ + +SP Y
Sbjct: 1753 --------------YSPTSPSYSPTSP--SYSPTSPSYSPTSPDY 1781
[95][TOP]
>UniRef100_UPI000051AA8E PREDICTED: similar to DNA-directed RNA polymerase II largest
subunit (RPB1) n=1 Tax=Apis mellifera
RepID=UPI000051AA8E
Length = 452
Score = 65.9 bits (159), Expect = 1e-09
Identities = 54/153 (35%), Positives = 69/153 (45%), Gaps = 6/153 (3%)
Frame = +2
Query: 65 TPGREGQRTPGRAFDAAMTPTY---AYSPA--RARTPGGTAFSPA-YTGPGGFSPINATA 226
TP Q TP TP Y + SPA TPGG FSP+ + G SP A +
Sbjct: 48 TPSMSPQMTPWMG----ATPGYGASSMSPALGSGMTPGGACFSPSGASDASGLSP--AYS 101
Query: 227 SFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGA 406
++SP S + G P SPAG +P SP SP Y SP +
Sbjct: 102 AYSPQPGSPGSPG---PSMSPYPMSPAGGASPSYSPTSPAYLPTSPSI--------TPSS 150
Query: 407 GAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
Y+P SP Y TSP YSP++P+ + +SP Y
Sbjct: 151 PNYSPTSPTYSPTSP--NYSPTSPSYSPTSPSY 181
Score = 57.8 bits (138), Expect = 4e-07
Identities = 52/174 (29%), Positives = 74/174 (42%), Gaps = 16/174 (9%)
Frame = +2
Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTY-AYSPARARTPG--GTAFSPAYTGP-G 199
S P G TPG G + + ++P Y AYSP + +PG G + SP P G
Sbjct: 68 SSMSPALGSGMTPGGACFSPSGASDASGLSPAYSAYSP-QPGSPGSPGPSMSPYPMSPAG 126
Query: 200 GFSPINATAS------------FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASP 343
G SP + S SP S T +P +P SP SP
Sbjct: 127 GASPSYSPTSPAYLPTSPSITPSSPNYSPTSPTYSPTSPNYSPTSPSYSPTSPSYSPTSP 186
Query: 344 GYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
Y+ SP + + + +Y+P SP+Y TSP YSP++P+ + +SP Y
Sbjct: 187 SYSPTSPSY--------SPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 230
Score = 57.0 bits (136), Expect = 7e-07
Identities = 50/174 (28%), Positives = 74/174 (42%), Gaps = 16/174 (9%)
Frame = +2
Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAYTGP 196
SP+ + Y+P Q +P + +P Y+ YSP +P SP YT
Sbjct: 290 SPSYSPTSPSYSPSSP-QYSPASPSYSPSSPKYSPTSPSYSPT---SPSFAGTSPQYTPA 345
Query: 197 GG-FSPINAT-----ASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAM 358
+SP + T S+SP A+G +P SP +P SP SP Y+
Sbjct: 346 SPTYSPTSPTYSPTSPSYSPSSPQHTASGSTRYSPSSPNYSPT---SPTYSPTSPQYSPS 402
Query: 359 SPRFGGGLGGGPAGGAGAYAPASPAYMATSPGM-----GYSPSTPALAVSSPGY 505
S ++ + + Y P SP+Y TSP GYSP++P + +SP Y
Sbjct: 403 STKY--------SPTSPTYTPTSPSYSPTSPTYSPPVPGYSPTSPTYSPASPAY 448
Score = 55.5 bits (132), Expect = 2e-06
Identities = 52/163 (31%), Positives = 75/163 (46%), Gaps = 5/163 (3%)
Frame = +2
Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAYTGP 196
SP+ + Y+P TP + +P+Y+ YSPA +P + SP Y
Sbjct: 269 SPSYSPTSPSYSPSSPNY-TPASPSYSPTSPSYSPSSPQYSPA---SPSYSPSSPKY--- 321
Query: 197 GGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGG 376
SP + S+SP +S AG + P +PA +P SP SP Y+ SP +
Sbjct: 322 ---SP--TSPSYSP--TSPSFAGTS------PQYTPA---SPTYSPTSPTYSPTSPSYSP 365
Query: 377 GLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
A G+ Y+P+SP Y TSP YSP++P + SS Y
Sbjct: 366 SSPQHTASGSTRYSPSSPNYSPTSP--TYSPTSPQYSPSSTKY 406
Score = 54.7 bits (130), Expect = 3e-06
Identities = 47/166 (28%), Positives = 76/166 (45%), Gaps = 8/166 (4%)
Frame = +2
Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY--T 190
SP+ + Y+P ++ +P+Y+ YSP +P + SP+Y T
Sbjct: 185 SPSYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPSYSPT---SPSYSPTSPSYSPT 240
Query: 191 GPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPR 367
P +SP + + S SP S + T +P +P +PASP Y+ SP
Sbjct: 241 SPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPNYTPASPSYSPTSPS 299
Query: 368 FGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
+ + + +Y+P+SP Y TSP YSP++P+ A +SP Y
Sbjct: 300 YSPS-SPQYSPASPSYSPSSPKYSPTSP--SYSPTSPSFAGTSPQY 342
[96][TOP]
>UniRef100_C5YGY9 DNA-directed RNA polymerase n=1 Tax=Sorghum bicolor
RepID=C5YGY9_SORBI
Length = 1857
Score = 65.9 bits (159), Expect = 1e-09
Identities = 53/180 (29%), Positives = 76/180 (42%), Gaps = 32/180 (17%)
Frame = +2
Query: 62 YTPGREGQRTPGRA-------FDAAMTPTYAYSPARARTP-----------GGTAFSPAY 187
Y G + TP R+ + M+P+Y SP +P G AFSP +
Sbjct: 1480 YVEGLDFGMTPARSPISGTPYHEGMMSPSYLLSPNIRASPINTDASFSPYVGHMAFSP-F 1538
Query: 188 TGPGGFSPINATAS--------------FSPIMSSADAAGRATPGRMTPGRSPAGRFTPR 325
PGG+SP + S SP S A + T TPG +P
Sbjct: 1539 PSPGGYSPSSGGYSPSSPVFTPEKGYSPLSPSYSPASPSYSPTSPSYTPGSPTYSPTSPN 1598
Query: 326 MSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
SP SP Y+ SP + + + +Y+P SP+Y TSP YSP++P+ + +SP Y
Sbjct: 1599 YSPTSPTYSPTSPSY--------SPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1648
Score = 63.9 bits (154), Expect = 6e-09
Identities = 53/170 (31%), Positives = 79/170 (46%), Gaps = 12/170 (7%)
Frame = +2
Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARAR----TPGGTAFSPA 184
SP+ + YTPG +P + +PTY+ YSP +P + SP+
Sbjct: 1575 SPSYSPTSPSYTPGSPTY-SPTSPNYSPTSPTYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1633
Query: 185 Y--TGPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAA 355
Y T P +SP + + S SP+ S A T +P +P SP SP Y+
Sbjct: 1634 YSPTSPS-YSPTSPSYSPTSPVYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSP 1692
Query: 356 MSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
SP + + + +Y+P SP+Y TSP YSP++PA + +SPGY
Sbjct: 1693 TSPSY--------SPTSPSYSPTSPSYSPTSP--SYSPTSPAYSPTSPGY 1732
[97][TOP]
>UniRef100_Q7Q3C6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Anopheles gambiae
RepID=Q7Q3C6_ANOGA
Length = 1878
Score = 65.9 bits (159), Expect = 1e-09
Identities = 52/166 (31%), Positives = 73/166 (43%), Gaps = 6/166 (3%)
Frame = +2
Query: 26 ARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSP-AYTGPGG 202
A +P+M ++ TPG G G PA TPGG +FSP A + G
Sbjct: 1492 AATPSMTPWQQSATPGYGGWSPSG--------------PASGMTPGGPSFSPSAQSDASG 1537
Query: 203 FSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGL 382
SP +S+SPI S + G + M+P + +P SP+SP YA SP
Sbjct: 1538 MSP----SSWSPIRGSPSSPGPS----MSPYPPSSPSMSPSYSPSSPNYAPNSP------ 1583
Query: 383 GGGPAGGAGAYAPASPAYMATSP-----GMGYSPSTPALAVSSPGY 505
G + +Y+P SP Y SP YSPS+P + ++ Y
Sbjct: 1584 ----GGASPSYSPTSPGYSPPSPQYSPGSSNYSPSSPNIHSATQNY 1625
Score = 58.2 bits (139), Expect = 3e-07
Identities = 48/177 (27%), Positives = 77/177 (43%), Gaps = 20/177 (11%)
Frame = +2
Query: 35 PAMPESERGYTPGREGQ--RTPGRAFDAAMTPTYAYSPARAR-TPGGTAFSPA----YTG 193
P+ P Y+P +PG A + + YSP + +PG + +SP+ ++
Sbjct: 1562 PSSPSMSPSYSPSSPNYAPNSPGGASPSYSPTSPGYSPPSPQYSPGSSNYSPSSPNIHSA 1621
Query: 194 PGGFSPINATASFSPIMSSADAAGRATPGRM---------TPGRSPAGRF----TPRMSP 334
+SP + + S M A+ A+PG +P SP+ +P SP
Sbjct: 1622 TQNYSPTSPSYSPMSPMHPTSASNFASPGYSPTSPSYSPTSPSYSPSSPVFSPTSPSYSP 1681
Query: 335 ASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
+SP Y+ SP +Y+P SP+Y TSP ++P TP+ + SSP Y
Sbjct: 1682 SSPSYSPTSP---------------SYSPTSPSYSPTSP--NFTPVTPSYSPSSPNY 1721
Score = 53.5 bits (127), Expect = 8e-06
Identities = 49/164 (29%), Positives = 72/164 (43%), Gaps = 8/164 (4%)
Frame = +2
Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA----YSPARAR----TPGGTAFSPAY 187
SPA P Y+P + +P + +P+Y Y+PA + +P + SP+Y
Sbjct: 1729 SPASPS----YSPSSP-KYSPTSPSYSPTSPSYIGSPHYTPASPQYGQASPNYSPTSPSY 1783
Query: 188 TGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPR 367
+ SP ++ S S S ++ TP +P S +P+ SP SP Y + SP
Sbjct: 1784 SPS---SPQHSPGSSSNHYSIGSSSYSQTPAPYSPNMSSYSPSSPKYSPTSPVYTSSSP- 1839
Query: 368 FGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSP 499
Y+P+SPAY T GYSPS+PA SP
Sbjct: 1840 --------------TYSPSSPAYSPTP--QGYSPSSPASPTYSP 1867
[98][TOP]
>UniRef100_UPI000186D846 predicted protein n=1 Tax=Pediculus humanus corporis
RepID=UPI000186D846
Length = 1885
Score = 65.5 bits (158), Expect = 2e-09
Identities = 47/156 (30%), Positives = 71/156 (45%), Gaps = 2/156 (1%)
Frame = +2
Query: 44 PESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPG--GTAFSPAYTGPGGFSPIN 217
P + G TPG G + + ++P Y+ + +P G + SP PGG
Sbjct: 1506 PHAGSGMTPGGPSFSPSGSSDASGLSPGYSPWSPQPGSPSSPGPSNSPYVPSPGG----- 1560
Query: 218 ATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPA 397
SP S + A T MTP S +P SP+SP Y+ SP + +
Sbjct: 1561 ---GMSPSYSPSSPAFAPTSPSMTPTSSNYSPTSPSYSPSSPNYSPNSPSY--------S 1609
Query: 398 GGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
+ +Y+P SP+Y TSP YSP++P+ + +SP Y
Sbjct: 1610 PTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1643
Score = 65.1 bits (157), Expect = 3e-09
Identities = 49/152 (32%), Positives = 69/152 (45%), Gaps = 5/152 (3%)
Frame = +2
Query: 65 TPGREGQRTPGRAFDAAMTPTY--AYSP--ARARTPGGTAFSPAYTGPG-GFSPINATAS 229
TP Q TP ++ TP Y A+SP TPGG +FSP+ + G SP
Sbjct: 1482 TPSMSPQMTP---WNQGETPAYVSAWSPHAGSGMTPGGPSFSPSGSSDASGLSP-----G 1533
Query: 230 FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAG 409
+SP + P SP G +P SP+SP +A SP +
Sbjct: 1534 YSPWSPQPGSPSSPGPSNSPYVPSPGGGMSPSYSPSSPAFAPTSPSM--------TPTSS 1585
Query: 410 AYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
Y+P SP+Y +SP YSP++P+ + +SP Y
Sbjct: 1586 NYSPTSPSYSPSSP--NYSPNSPSYSPTSPSY 1615
Score = 57.8 bits (138), Expect = 4e-07
Identities = 48/161 (29%), Positives = 72/161 (44%), Gaps = 1/161 (0%)
Frame = +2
Query: 26 ARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-YSPARARTPGGTAFSPAYTGPGG 202
+ SP +P G +P +MTPT + YSP +P + SP Y+ P
Sbjct: 1550 SNSPYVPSPGGGMSPSYSPSSPAFAPTSPSMTPTSSNYSPT---SPSYSPSSPNYS-PNS 1605
Query: 203 FSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGL 382
S + S+SP S +P SP +P SP SP Y+ SP +
Sbjct: 1606 PSYSPTSPSYSPTSPSYSPT--------SPSYSPT---SPSYSPTSPSYSPTSPSY---- 1650
Query: 383 GGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
+ + +Y+P SP+Y TSP YSP++P+ + +SP Y
Sbjct: 1651 ----SPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1685
Score = 54.3 bits (129), Expect = 4e-06
Identities = 50/183 (27%), Positives = 80/183 (43%), Gaps = 25/183 (13%)
Frame = +2
Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-YSPARART-PGGTAFSPAYTGPGGF 205
SP+ + Y+P ++ +P+Y+ SP+ +RT P + SP+Y+ P
Sbjct: 1661 SPSYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPSYSRTSPSYSPTSPSYS-PSSP 1718
Query: 206 SPINATASFSPIMSSADAAGRATPGR------------MTPGRSPAG--------RFTP- 322
+ A+ SFSP S ++ R +P +P SP ++TP
Sbjct: 1719 NYTPASPSFSPTSPSLYSSPRYSPASPSYSPGSPKYSPTSPSYSPTSPSYASVSPQYTPT 1778
Query: 323 --RMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSS 496
+ SP SP Y+ SP + G + Y+P SP Y TS + YSP++P + SS
Sbjct: 1779 SPQYSPTSPTYSPTSPSYSPSSPSHTPGASTRYSPTSPKYSPTS--LSYSPASPQYSPSS 1836
Query: 497 PGY 505
Y
Sbjct: 1837 SKY 1839
[99][TOP]
>UniRef100_UPI00016E658E UPI00016E658E related cluster n=1 Tax=Takifugu rubripes
RepID=UPI00016E658E
Length = 1628
Score = 65.5 bits (158), Expect = 2e-09
Identities = 59/159 (37%), Positives = 75/159 (47%), Gaps = 13/159 (8%)
Frame = +2
Query: 68 PGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGFSP------INATAS 229
PG + G F +A +P SPA TP T +PAY G +SP A
Sbjct: 1489 PGISVAGSTGMFFGSAPSPMSGMSPAM--TPWNTGATPAY---GAWSPSVGSGMTPGAAG 1543
Query: 230 FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAA-MSPRFGGGLGGGPAGGA 406
FSP +S DA+G +PG SPA TP SP SPG A+ P GG +
Sbjct: 1544 FSPSAAS-DASG------FSPGYSPAWSPTPG-SPGSPGPASPYIPSPGGAMSPN----- 1590
Query: 407 GAYAPASPAYMATSPG------MGYSPSTPALAVSSPGY 505
Y+P SPAY SPG GYSP++P+ + +SP Y
Sbjct: 1591 --YSPTSPAYEPRSPGGYTPQSPGYSPTSPSYSPTSPSY 1627
[100][TOP]
>UniRef100_B9FZ51 DNA-directed RNA polymerase n=1 Tax=Oryza sativa Japonica Group
RepID=B9FZ51_ORYSJ
Length = 1526
Score = 65.5 bits (158), Expect = 2e-09
Identities = 55/178 (30%), Positives = 76/178 (42%), Gaps = 30/178 (16%)
Frame = +2
Query: 62 YTPGREGQRTPGRA-------FDAAMTPTYAYSPARARTP----------GGTAFSPA-- 184
Y G + TP R+ + M+P+Y SP +P GG AFSP
Sbjct: 1152 YVEGLDFGMTPARSPISGTPYHEGMMSPSYLLSPNIRASPITDAQFSPYVGGMAFSPVPS 1211
Query: 185 --YT--GPGGFSPINATAS-------FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMS 331
YT GG+SP + S SP S A + T TPG +P S
Sbjct: 1212 PGYTPSSGGGYSPSSPVYSPGPGYSPTSPSYSPASPSYSPTSPSYTPGSPTYSPTSPSYS 1271
Query: 332 PASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
P SP Y+ SP + + + +Y+P SP+Y TSP YSP++P + +SP Y
Sbjct: 1272 PTSPSYSPTSPSY-SPTSPSYSPTSPSYSPTSPSYSPTSP--SYSPTSPVYSPTSPAY 1326
Score = 64.3 bits (155), Expect = 4e-09
Identities = 51/166 (30%), Positives = 78/166 (46%), Gaps = 8/166 (4%)
Frame = +2
Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY--T 190
SP+ + YTPG ++ +P+Y+ YSP +P + SP+Y T
Sbjct: 1246 SPSYSPTSPSYTPGSPTYSPTSPSYSPT-SPSYSPTSPSYSPT---SPSYSPTSPSYSPT 1301
Query: 191 GPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPR 367
P +SP + + S SP+ S A T +P +P SP SP Y+ SP
Sbjct: 1302 SPS-YSPTSPSYSPTSPVYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1360
Query: 368 FGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
+ + + +Y+P SP+Y TSP YSP++PA + +SPGY
Sbjct: 1361 Y--------SPTSPSYSPTSPSYSPTSP--SYSPTSPAYSPTSPGY 1396
[101][TOP]
>UniRef100_A6YIY0 Major ampullate spidroin 2 n=1 Tax=Latrodectus hesperus
RepID=A6YIY0_9ARAC
Length = 3779
Score = 65.1 bits (157), Expect = 3e-09
Identities = 58/169 (34%), Positives = 69/169 (40%), Gaps = 4/169 (2%)
Frame = +2
Query: 11 ASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYT 190
+ A A + A GY PG G PG A AA A + A PGG P+
Sbjct: 2934 SGAAAAAAAAAGSGPSGYGPGAAGPSGPGGAGAAA-----AAASAGGSGPGGYGQGPSGY 2988
Query: 191 GPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRF 370
GP G P+ + P S A AA A G PGR + P S A+ AA P +
Sbjct: 2989 GPTG--PVGQQG-YGPGGSGAAAAAAAAAGGAGPGRQQG--YGPGSSGAAAAAAAGGPGY 3043
Query: 371 GGGLGGGPAGGAGAYAPASPAYMATSPGMGYSP----STPALAVSSPGY 505
GG G GP GGAGA A + GY P + A A PGY
Sbjct: 3044 GGQQGYGP-GGAGAAAAVAAGGAGPGRQQGYGPGSSGAAAAAAAGGPGY 3091
Score = 63.5 bits (153), Expect = 7e-09
Identities = 57/171 (33%), Positives = 73/171 (42%), Gaps = 4/171 (2%)
Frame = +2
Query: 5 AAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPA 184
AAA+A A A P+ ++GY PG G A Y P A A + A
Sbjct: 2512 AAAAAAAAAGGAGPDRQQGYGPGSSGAAAAAAAGGPGYGGQQGYGPGGAGAAAAAA-AAA 2570
Query: 185 YTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSP 364
GP G+ P A A+ ++A AAG + PG G+ P+G P+ PG
Sbjct: 2571 GPGPSGYGPGGAGAA-----AAAAAAGGSGPGGY--GQGPSG-----YGPSGPG------ 2612
Query: 365 RFGGGLGGGPAGGAGAYAPASPAYMATSPG--MGYSP--STPALAVSSPGY 505
G G GP GG+GA A A+ A PG GY P + A A PGY
Sbjct: 2613 ---GQQGNGP-GGSGAAAAAAAAAGGAGPGRQQGYGPGGAAAAAAAGGPGY 2659
Score = 62.8 bits (151), Expect = 1e-08
Identities = 56/166 (33%), Positives = 68/166 (40%)
Frame = +2
Query: 5 AAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPA 184
AAA+A A A P ++GY PG G A AA Y + PGG A + A
Sbjct: 1324 AAAAAAAAAGGAGPGRQQGYGPGSSG------AAAAAAAGGPGYGGQQGYGPGG-AGAAA 1376
Query: 185 YTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSP 364
GG P ++ P S A AA A G PGR + P S A+ AA P
Sbjct: 1377 AAAAGGAGP-GTQQAYGPGGSGAAAAAAAAAGGAGPGRQQG--YGPGSSGAAAAAAAGGP 1433
Query: 365 RFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPG 502
+GG G GP GGAGA A A+ Y P A + G
Sbjct: 1434 GYGGQQGYGP-GGAGAAAAAAAGGAGAGRQQAYGPGGSGAAAAGSG 1478
Score = 62.8 bits (151), Expect = 1e-08
Identities = 56/166 (33%), Positives = 68/166 (40%)
Frame = +2
Query: 5 AAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPA 184
AAA+A A A P ++GY PG G A AA Y + PGG A + A
Sbjct: 2102 AAAAAAAAAGGAGPGRQQGYGPGSSG------AAAAAAAGGPGYGGQQGYGPGG-AGAAA 2154
Query: 185 YTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSP 364
GG P ++ P S A AA A G PGR + P S A+ AA P
Sbjct: 2155 AAAAGGAGP-GTQQAYGPGGSGAAAAAAAAAGGAGPGRQQG--YGPGSSGAAAAAAAGGP 2211
Query: 365 RFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPG 502
+GG G GP GGAGA A A+ Y P A + G
Sbjct: 2212 GYGGQQGYGP-GGAGAAAAAAAGGAGAGRQQAYGPGGSGAAAAGSG 2256
Score = 60.5 bits (145), Expect = 6e-08
Identities = 64/204 (31%), Positives = 83/204 (40%), Gaps = 38/204 (18%)
Frame = +2
Query: 5 AAASARIARSPAMPESERGYTPGREGQRT----------------PGRAFDAAMTPTYAY 136
AAA+A A A P ++GY PG G PG A AA +
Sbjct: 445 AAAAAAAAAGGAGPGRQQGYGPGGSGAAAATAAGGPGYVGQQRYGPGGAGAAAAAAAGSA 504
Query: 137 SPARART--PGGT----AFSPAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMT--- 289
P+R + PGG+ A + A +GP G+ P A+ ++A A G A PGR
Sbjct: 505 GPSRQQAYGPGGSGPAAATAAAGSGPSGYGP-GASGPVGADAAAAAATGSAGPGRQQAYG 563
Query: 290 PGRSPA----------GR---FTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASP 430
PG S A GR + P S A+ AA P +GG G GP GGAGA A A+
Sbjct: 564 PGESGAAAAAASGAGPGRQLGYGPGGSGAAAAAAAGGPGYGGQQGYGP-GGAGAAAAAAA 622
Query: 431 AYMATSPGMGYSPSTPALAVSSPG 502
Y P A ++ G
Sbjct: 623 GGAGPGRQQTYGPGGSGAAATAAG 646
Score = 60.1 bits (144), Expect = 8e-08
Identities = 54/163 (33%), Positives = 66/163 (40%)
Frame = +2
Query: 8 AASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAY 187
AA+A A P ++GY PG G A A AY P + G A + A
Sbjct: 2367 AAAAAAAGGPGYG-GQQGYGPGGAGAAAAAAAGGAGPGRQQAYGPGGS---GAAAAAAAG 2422
Query: 188 TGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPR 367
TGP G+ P A A AA A G PGR A + P S A+ AA P
Sbjct: 2423 TGPSGYGPGAAGPG------GAGAAAAAAAGGAGPGRQQA--YGPGGSGAAAAAAAGGPG 2474
Query: 368 FGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSS 496
+GG G GP GGAGA A A+ Y P A ++
Sbjct: 2475 YGGQQGYGP-GGAGAAAAAAAGGAGPGTQQAYGPGGSGAAAAA 2516
Score = 59.3 bits (142), Expect = 1e-07
Identities = 54/166 (32%), Positives = 65/166 (39%)
Frame = +2
Query: 5 AAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPA 184
AAA+A A P GY PG G G A AA S G + + P+
Sbjct: 2696 AAAAAAAAAGPG----PSGYGPGASGPSGTGGAGAAAAAAAAGGSGPGGYGQGASGYGPS 2751
Query: 185 YTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSP 364
GPGG + P S A AA A G PGR + P S A+ AA P
Sbjct: 2752 --GPGG------QQGYGPGGSGAAAAAAAAAGGAGPGRQQG--YGPGSSGAAAAAAAGGP 2801
Query: 365 RFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPG 502
+GG G GP GGAGA A A+ Y P A ++ G
Sbjct: 2802 GYGGPQGYGP-GGAGAAAAAAAGGAGPGRQQAYGPGGSGAAAAAAG 2846
Score = 58.9 bits (141), Expect = 2e-07
Identities = 62/182 (34%), Positives = 74/182 (40%), Gaps = 17/182 (9%)
Frame = +2
Query: 8 AASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAY 187
AA+A A P ++GY PG G A A AY P + A A
Sbjct: 1094 AAAAAAAVGPGYG-GQQGYGPGGAGAAAAAAAGGAGPGRQQAYGPGGSGATAAAAV--AG 1150
Query: 188 TGPGGFSPINATASFSPIMSSADAAGRATPGRMT---PGRSPA----------GR---FT 319
+GP G+ P A A+ +A AAG A PGR PG S A GR +
Sbjct: 1151 SGPSGYGPGGAGAA------AAAAAGGAGPGRQQAYGPGGSGAAAAAASGAGPGRQQVYG 1204
Query: 320 PRMSPASPGYAAMSPRFGGGLGGGPAG-GAGAYAPASPAYMATSPGMGYSPSTPALAVSS 496
P S A+ AA P +GG G GP G GA A A A A T G S A A +
Sbjct: 1205 PGGSGAAAAAAAGGPGYGGQQGYGPGGAGAAAAAAAGGAGQGTRQAYGPGGSGAAAAAAG 1264
Query: 497 PG 502
PG
Sbjct: 1265 PG 1266
Score = 58.9 bits (141), Expect = 2e-07
Identities = 64/183 (34%), Positives = 77/183 (42%), Gaps = 18/183 (9%)
Frame = +2
Query: 8 AASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAY 187
AA+A A P ++GY PG G A A AY P + G TA + A
Sbjct: 1872 AAAAAAAVGPGYG-GQQGYGPGGAGAAAAAAAGGAGPGRQQAYGPGGS---GATAAAAAA 1927
Query: 188 -TGPGGFSPINATASFSPIMSSADAAGRATPGRMT---PGRSPA----------GR---F 316
+GP G+ P A A+ +A AAG A PGR PG S A GR +
Sbjct: 1928 GSGPSGYGPGGAGAA------AAAAAGGAGPGRQQAYGPGGSGAAAAAASGAGPGRQQVY 1981
Query: 317 TPRMSPASPGYAAMSPRFGGGLGGGPAG-GAGAYAPASPAYMATSPGMGYSPSTPALAVS 493
P S A+ AA P +GG G GP G GA A A A A T G S A A +
Sbjct: 1982 GPVGSGAAAAAAAGGPGYGGQQGYGPGGAGAAAAAAAGGAGQGTRQAYGPGGSGAAAAAA 2041
Query: 494 SPG 502
PG
Sbjct: 2042 GPG 2044
Score = 58.5 bits (140), Expect = 2e-07
Identities = 60/188 (31%), Positives = 71/188 (37%), Gaps = 22/188 (11%)
Frame = +2
Query: 8 AASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAY 187
AA+A A P ++GY PG G A A AY P + G A + A
Sbjct: 1589 AAAAAAAGGPGYG-GQQGYGPGGAGAAAAAAAGGAGPGRQQAYGPGGS---GAAAAAAAG 1644
Query: 188 TGPGGFSPINATASFSPIMSSADAAGRATPGRMT---PGRSPAGRFTPRMSPASPGYAAM 358
TGP G+ P A ++A AAG A PGR PG S A P G
Sbjct: 1645 TGPSGYGP-GAAGPGGAGAAAAAAAGSAGPGRQQAYGPGGSGAAAAAAAGGPGYGGQQGY 1703
Query: 359 SPRFGGGLGGGPAGGAG-----AYAP----ASPAYMATSPG------MGYSPSTP----A 481
P G AGGAG AY P A+ A A + G GY P + A
Sbjct: 1704 GPGGAGAAAAAAAGGAGPGTQQAYGPGGSGAAAAAAAAAGGAGPDRQQGYGPGSSGAAAA 1763
Query: 482 LAVSSPGY 505
A PGY
Sbjct: 1764 AAAGGPGY 1771
Score = 58.5 bits (140), Expect = 2e-07
Identities = 52/164 (31%), Positives = 63/164 (38%), Gaps = 7/164 (4%)
Frame = +2
Query: 35 PAMPESERGYTPGREGQRTPGRAFDAAMTP--TYAYSP-ARARTPGGTAFSPAYTGPGGF 205
P P ++GY PG G A P Y P + A P Y G G+
Sbjct: 2990 PTGPVGQQGYGPGGSGAAAAAAAAAGGAGPGRQQGYGPGSSGAAAAAAAGGPGYGGQQGY 3049
Query: 206 SPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLG 385
P A A ++A AAG A PGR + P S A+ AA P +GG G
Sbjct: 3050 GPGGAGA------AAAVAAGGAGPGRQQ-------GYGPGSSGAAAAAAAGGPGYGGQQG 3096
Query: 386 GGPAGGAGAYAPASPAYMATSPGMGYSP----STPALAVSSPGY 505
GP GGAGA A + GY P + A A PGY
Sbjct: 3097 YGP-GGAGAAAAVAAGGAGPGRQQGYGPGSSGAAAAAAAGGPGY 3139
Score = 57.0 bits (136), Expect = 7e-07
Identities = 51/167 (30%), Positives = 63/167 (37%), Gaps = 4/167 (2%)
Frame = +2
Query: 8 AASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSP----ARARTPGGTAF 175
AA+A A P ++GY PG G A A Y P A A GG+
Sbjct: 592 AAAAAAAGGPGYG-GQQGYGPGGAGAAAAAAAGGAGPGRQQTYGPGGSGAAATAAGGSGP 650
Query: 176 SPAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAA 355
GP G+ P + AA A G PGR + PR S A+ AA
Sbjct: 651 GGYGQGPSGYGPSGPGGQQGYGPGGSGAAAAAAAGEAGPGRQQG--YGPRGSGAAAAAAA 708
Query: 356 MSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSS 496
P +GG G GP GGAGA A A+ Y P A ++
Sbjct: 709 GGPGYGGQSGYGP-GGAGAAAAAAAGGAGPGRQQEYGPGGSGAAAAA 754
Score = 57.0 bits (136), Expect = 7e-07
Identities = 52/160 (32%), Positives = 63/160 (39%), Gaps = 3/160 (1%)
Frame = +2
Query: 26 ARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPA---YTGP 196
A + A GY PG G PG A AA + A PGG P+ +GP
Sbjct: 2036 AAAAAAGPGPSGYGPGAAGPSGPGLAGAAAA------AAAGGSGPGGNGQRPSGYGQSGP 2089
Query: 197 GGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGG 376
GG + P S A AA A G PGR + P S A+ AA P +GG
Sbjct: 2090 GG------QQGYGPGGSGAAAAAAAAAGGAGPGRQQG--YGPGSSGAAAAAAAGGPGYGG 2141
Query: 377 GLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSS 496
G GP GGAGA A A+ Y P A ++
Sbjct: 2142 QQGYGP-GGAGAAAAAAAGGAGPGTQQAYGPGGSGAAAAA 2180
Score = 56.6 bits (135), Expect = 9e-07
Identities = 57/184 (30%), Positives = 74/184 (40%), Gaps = 18/184 (9%)
Frame = +2
Query: 5 AAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGG-----T 169
A A+A A + A P ++ Y PG G A + Y A PGG
Sbjct: 972 AGAAAAAAAAGAGPGRQQEYGPGGTGAAAAAAAAAGSGPSGYGQGAAGPSGPGGEGTAAA 1031
Query: 170 AFSPAYTGPGGF--SPINATAS-------FSPIMSSADAAGRATPGRMTPGRSPAGRFTP 322
A + +GPGG+ P +AS + P S AA A G GR + P
Sbjct: 1032 AAAAGGSGPGGYGQGPSGYSASGPGGQQGYGPGGSGLAAAAAAAAGGAGTGRQQG--YGP 1089
Query: 323 RMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSP----STPALAV 490
S A+ AA+ P +GG G GP GGAGA A A+ Y P +T A AV
Sbjct: 1090 GGSGAAAAAAAVGPGYGGQQGYGP-GGAGAAAAAAAGGAGPGRQQAYGPGGSGATAAAAV 1148
Query: 491 SSPG 502
+ G
Sbjct: 1149 AGSG 1152
Score = 56.6 bits (135), Expect = 9e-07
Identities = 62/189 (32%), Positives = 76/189 (40%), Gaps = 25/189 (13%)
Frame = +2
Query: 5 AAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARART--PGGT--- 169
AAA+A P+ GY PG G PG A AA + P R + PGG+
Sbjct: 1637 AAAAAAAGTGPS------GYGPGAAG---PGGAGAAAAAAAGSAGPGRQQAYGPGGSGAA 1687
Query: 170 ----AFSPAYTGPGGFSPINATAS---------------FSPIMSSADAAGRATPGRMTP 292
A P Y G G+ P A A+ + P S A AA A G P
Sbjct: 1688 AAAAAGGPGYGGQQGYGPGGAGAAAAAAAGGAGPGTQQAYGPGGSGAAAAAAAAAGGAGP 1747
Query: 293 GRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPG-MGYSP 469
R + P S A+ AA P +GG G GP GGAGA A+ A A PG GY P
Sbjct: 1748 DRQQG--YGPGSSGAAAAAAAGGPGYGGQQGYGP-GGAGA---AAAAAAAAGPGPSGYGP 1801
Query: 470 STPALAVSS 496
A ++
Sbjct: 1802 GGAGAAAAA 1810
Score = 56.6 bits (135), Expect = 9e-07
Identities = 59/200 (29%), Positives = 76/200 (38%), Gaps = 34/200 (17%)
Frame = +2
Query: 5 AAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSP---------ARART 157
AAA+A A A P+ ++GY PG G A Y P A A
Sbjct: 1734 AAAAAAAAAGGAGPDRQQGYGPGSSGAAAAAAAGGPGYGGQQGYGPGGAGAAAAAAAAAG 1793
Query: 158 PGGTAFSPAY------------TGPGGFS--PINATAS-------FSPIMSSADAAGRAT 274
PG + + P +GPGG+ P +AS + P S AA A
Sbjct: 1794 PGPSGYGPGGAGAAAAAAAAGGSGPGGYGQGPSGYSASGPGGQQGYGPGGSGLAAAAAAA 1853
Query: 275 PGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPG 454
G GR + P S A+ AA+ P +GG G GP GGAGA A A+
Sbjct: 1854 AGGAGTGRQQG--YGPGGSGAAAAAAAVGPGYGGQQGYGP-GGAGAAAAAAAGGAGPGRQ 1910
Query: 455 MGYSP----STPALAVSSPG 502
Y P +T A A + G
Sbjct: 1911 QAYGPGGSGATAAAAAAGSG 1930
Score = 56.6 bits (135), Expect = 9e-07
Identities = 58/181 (32%), Positives = 69/181 (38%), Gaps = 15/181 (8%)
Frame = +2
Query: 8 AASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSP---------ARARTP 160
AA+A A P ++GY PG G A A AY P A A P
Sbjct: 2648 AAAAAAAGGPGYG-GQQGYGPGGAGAAAAAAAGGAGPGRQQAYGPGGAGAAAAAAAAAGP 2706
Query: 161 GGTAFSPAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPAS 340
G + + P +GP G A A+ A AAG + PG G S
Sbjct: 2707 GPSGYGPGASGPSGTGGAGAAAA-------AAAAGGSGPGGYGQGAS------------- 2746
Query: 341 PGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPG--MGYSPSTP----ALAVSSPG 502
GY P GG G GP GG+GA A A+ A PG GY P + A A PG
Sbjct: 2747 -GYGPSGP--GGQQGYGP-GGSGAAAAAAAAAGGAGPGRQQGYGPGSSGAAAAAAAGGPG 2802
Query: 503 Y 505
Y
Sbjct: 2803 Y 2803
Score = 56.2 bits (134), Expect = 1e-06
Identities = 59/202 (29%), Positives = 72/202 (35%), Gaps = 45/202 (22%)
Frame = +2
Query: 35 PAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSP-----ARARTPGGTAFSPAYTGPG 199
P+ P ++GY PG G A +A Y P A A GG P Y G
Sbjct: 662 PSGPGGQQGYGPGGSGAAAAAAAGEAGPGRQQGYGPRGSGAAAAAAAGG----PGYGGQS 717
Query: 200 GFSPINATASFSPIMSSADAAGRATPGRM----------------TPGRSPAGRFTPRMS 331
G+ P A A+ +A AAG A PGR G P+G
Sbjct: 718 GYGPGGAGAA------AAAAAGGAGPGRQQEYGPGGSGAAAAAAAAAGSGPSGYGPGAAG 771
Query: 332 PASPGYAAMSPRFGGG---LGGGPAG---------------GAGAYAPASPAYMATSPG- 454
P PG A + G G G GP+G G+GA A A+ A PG
Sbjct: 772 PIGPGGAGAAAAGGSGPVGYGQGPSGYGASGTGGEQDYGPGGSGAAAAAAAAAGGAGPGR 831
Query: 455 -MGYSP----STPALAVSSPGY 505
GY P + A A PGY
Sbjct: 832 QQGYGPGGSGAAAAAAAGGPGY 853
Score = 56.2 bits (134), Expect = 1e-06
Identities = 55/172 (31%), Positives = 68/172 (39%), Gaps = 6/172 (3%)
Frame = +2
Query: 8 AASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAY 187
AA+A A P ++GY PG G A A AY P + G A + A
Sbjct: 1988 AAAAAAAGGPGYG-GQQGYGPGGAGAAAAAAAGGAGQGTRQAYGPGGS----GAAAAAAG 2042
Query: 188 TGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPR 367
GP G+ P A S + +A AA G G+ P+ GY P
Sbjct: 2043 PGPSGYGPGAAGPSGPGLAGAAAAAAAGGSGPGGNGQRPS------------GYGQSGP- 2089
Query: 368 FGGGLGGGPAGGAGAYAPASPAYMATSPG--MGYSP----STPALAVSSPGY 505
GG G GP GG+GA A A+ A PG GY P + A A PGY
Sbjct: 2090 -GGQQGYGP-GGSGAAAAAAAAAGGAGPGRQQGYGPGSSGAAAAAAAGGPGY 2139
Score = 56.2 bits (134), Expect = 1e-06
Identities = 55/185 (29%), Positives = 66/185 (35%), Gaps = 18/185 (9%)
Frame = +2
Query: 5 AAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPA 184
A A+A +A A P ++GY PG G A Y P A A A
Sbjct: 3054 AGAAAAVAAGGAGPGRQQGYGPGSSGAAAAAAAGGPGYGGQQGYGPGGAGAAAAVAAGGA 3113
Query: 185 YTG------PGGFSPINATASFSPI--------MSSADAAGRATPGRMTPGRSPAGRFTP 322
G PG A A+ P + A AA G PGR A + P
Sbjct: 3114 GPGRQQGYGPGSSGAAAAAAAGGPGYGGQQGYGLGVAGAAAAVAAGGAGPGRQQA--YGP 3171
Query: 323 RMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSP----STPALAV 490
S A+ AA S R G G G GGAGA A A+ + Y P + A A
Sbjct: 3172 GGSGAAAAAAAGSGRSGYGPGAAGTGGAGAAAAAAAGGAGSGRQQAYGPGGSGAAAASAA 3231
Query: 491 SSPGY 505
PGY
Sbjct: 3232 GGPGY 3236
Score = 55.8 bits (133), Expect = 2e-06
Identities = 50/157 (31%), Positives = 60/157 (38%)
Frame = +2
Query: 26 ARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGF 205
A + A GY PG G PG A AA + A PGG P+ G G
Sbjct: 1258 AAAAAAGPGPSGYGPGAAGPSGPGLAGAAAA------AAAGGSGPGGNGQRPSGYGQSG- 1310
Query: 206 SPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLG 385
+ P S A AA A G PGR + P S A+ AA P +GG G
Sbjct: 1311 --TGGQQGYGPGGSGAAAAAAAAAGGAGPGRQQG--YGPGSSGAAAAAAAGGPGYGGQQG 1366
Query: 386 GGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSS 496
GP GGAGA A A+ Y P A ++
Sbjct: 1367 YGP-GGAGAAAAAAAGGAGPGTQQAYGPGGSGAAAAA 1402
Score = 55.8 bits (133), Expect = 2e-06
Identities = 56/165 (33%), Positives = 69/165 (41%), Gaps = 1/165 (0%)
Frame = +2
Query: 5 AAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPA 184
A A+A A A P ++ Y PG G A AA Y + PGG A + A
Sbjct: 2438 AGAAAAAAAGGAGPGRQQAYGPGGSG------AAAAAAAGGPGYGGQQGYGPGG-AGAAA 2490
Query: 185 YTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSP 364
GG P ++ P S A AA A G P R + P S A+ AA P
Sbjct: 2491 AAAAGGAGP-GTQQAYGPGGSGAAAAAAAAAGGAGPDRQQG--YGPGSSGAAAAAAAGGP 2547
Query: 365 RFGGGLGGGPAGGAGAYAPASPAYMATSPG-MGYSPSTPALAVSS 496
+GG G GP GGAGA A+ A A PG GY P A ++
Sbjct: 2548 GYGGQQGYGP-GGAGA---AAAAAAAAGPGPSGYGPGGAGAAAAA 2588
Score = 55.5 bits (132), Expect = 2e-06
Identities = 53/176 (30%), Positives = 66/176 (37%), Gaps = 10/176 (5%)
Frame = +2
Query: 5 AAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPA 184
A A+A A A P ++ Y PG G A + Y A PGG + A
Sbjct: 724 AGAAAAAAAGGAGPGRQQEYGPGGSGAAAAAAAAAGSGPSGYGPGAAGPIGPGGAGAAAA 783
Query: 185 Y--------TGPGGF--SPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSP 334
GP G+ S + P S A AA A G PGR + P S
Sbjct: 784 GGSGPVGYGQGPSGYGASGTGGEQDYGPGGSGAAAAAAAAAGGAGPGRQQG--YGPGGSG 841
Query: 335 ASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPG 502
A+ AA P +GG G GP GGAGA A A+ Y P A ++ G
Sbjct: 842 AAAAAAAGGPGYGGQQGYGP-GGAGAAAAAAAGGAGPGRQQPYGPGGAGAAAAAAG 896
Score = 55.5 bits (132), Expect = 2e-06
Identities = 62/180 (34%), Positives = 76/180 (42%), Gaps = 24/180 (13%)
Frame = +2
Query: 5 AAASARIARSPAMPESERGYT--------------PGREGQRT--PGRAFDAAMTPTYAY 136
AAA+A A A P ++GY PG GQ+ PG A AA
Sbjct: 3343 AAAAAAAAAGGAGPGRQQGYGQGSSGAAAAAAAGGPGYGGQQVYGPGGAGAAAAVAAGGA 3402
Query: 137 SPAR--ARTPGGTAFSPAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAG 310
P R A PGG+ + A +GP G+ P A A+ AAG A PGR
Sbjct: 3403 GPGRQQAYGPGGSG-AAAGSGPSGYGPGAAAAA---------AAGGAGPGRQQ------- 3445
Query: 311 RFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPG------MGYSPS 472
+ P S A+ AA P +GG G GP GGAGA A A+ + PG GY PS
Sbjct: 3446 AYGPGGSGAAAAAAAGGPGYGGQQGYGP-GGAGAAAAAAAG--GSGPGGYGQGPSGYGPS 3502
Score = 55.1 bits (131), Expect = 3e-06
Identities = 58/178 (32%), Positives = 66/178 (37%), Gaps = 15/178 (8%)
Frame = +2
Query: 5 AAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPA 184
AAA+A A P GY PG G P A AA A + A PGG P+
Sbjct: 3273 AAAAAAAASGPG----PSGYEPGAAGPSGPAGAGAAA-----AAAAAGGSGPGGYGQGPS 3323
Query: 185 YTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSP 364
GP G + P S A AA A G PGR + S A+ AA P
Sbjct: 3324 GYGPSG---PGGQQGYGPGGSGAAAAAAAAAGGAGPGRQQG--YGQGSSGAAAAAAAGGP 3378
Query: 365 RFGGGLGGGP----------AGGAG-----AYAPASPAYMATSPGMGYSPSTPALAVS 493
+GG GP AGGAG AY P A S GY P A A +
Sbjct: 3379 GYGGQQVYGPGGAGAAAAVAAGGAGPGRQQAYGPGGSGAAAGSGPSGYGPGAAAAAAA 3436
Score = 54.7 bits (130), Expect = 3e-06
Identities = 59/178 (33%), Positives = 68/178 (38%), Gaps = 11/178 (6%)
Frame = +2
Query: 5 AAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPA 184
AAA+A A A P ++GY PG G A A GG P
Sbjct: 816 AAAAAAAAAGGAGPGRQQGYGPGGSGA-------------------AAAAAAGG----PG 852
Query: 185 YTGPGGFSPINATASFSPIMSSADAAGRATPGRMTP-GRSPAGRFTPRMSPASPG----- 346
Y G G+ P A A+ +A AAG A PGR P G AG + PG
Sbjct: 853 YGGQQGYGPGGAGAA------AAAAAGGAGPGRQQPYGPGGAGAAAAAAGGSGPGGYGQG 906
Query: 347 ---YAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSP--STPALAVSSPGY 505
Y A P GG G GP GG+GA A A+ GY P S A A GY
Sbjct: 907 PSGYGASGP--GGQQGFGP-GGSGAAAAAAAGGAGPGRQQGYGPGGSGAAAAAGGTGY 961
[102][TOP]
>UniRef100_P16356 DNA-directed RNA polymerase II subunit RPB1 n=1 Tax=Caenorhabditis
elegans RepID=RPB1_CAEEL
Length = 1852
Score = 65.1 bits (157), Expect = 3e-09
Identities = 46/137 (33%), Positives = 64/137 (46%), Gaps = 3/137 (2%)
Frame = +2
Query: 104 FDAAMTPTYA---YSPARARTPGGTAFSPAYTGPGGFSPINATASFSPIMSSADAAGRAT 274
+++ +TPTYA +SP G FSPA GG SP N +SP S D G +
Sbjct: 1504 WNSGVTPTYAGAAWSPTTGGMSPGAGFSPAGNTDGGASPFNE-GGWSPA-SPGDPLGALS 1561
Query: 275 PGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPG 454
P + G G + SP+SP ++ SP Y+P SP+Y TSP
Sbjct: 1562 PRTPSYGGMSPGVY----SPSSPQFSMTSPH---------------YSPTSPSYSPTSPA 1602
Query: 455 MGYSPSTPALAVSSPGY 505
G SP +P+ + +SP Y
Sbjct: 1603 AGQSPVSPSYSPTSPSY 1619
Score = 60.5 bits (145), Expect = 6e-08
Identities = 55/176 (31%), Positives = 80/176 (45%), Gaps = 16/176 (9%)
Frame = +2
Query: 26 ARSPAMPESERGYTPGREGQRTPGRAFDAA----MTPTYA-YSPARARTPGGTAFSPAYT 190
A SP P S G +PG +P + + +P+Y+ SPA ++P ++SP T
Sbjct: 1559 ALSPRTP-SYGGMSPGVYSPSSPQFSMTSPHYSPTSPSYSPTSPAAGQSPVSPSYSP--T 1615
Query: 191 GPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPR 367
P +SP + + S SP S + T +P +P SP+SP Y+ SPR
Sbjct: 1616 SPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYSPSSPSYSPSSPR 1674
Query: 368 FG------GGLGGGPAGGAGAYAPASPAYMATSP----GMGYSPSTPALAVSSPGY 505
+ + + Y+P SP Y TSP G GYSPS+P + SSP Y
Sbjct: 1675 YSPTSPTYSPTSPTYSPTSPTYSPTSPTYSPTSPSYESGGGYSPSSPKYSPSSPTY 1730
Score = 57.0 bits (136), Expect = 7e-07
Identities = 49/159 (30%), Positives = 76/159 (47%), Gaps = 1/159 (0%)
Frame = +2
Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTY-AYSPARARTPGGTAFSPAYTGPGGFS 208
SP+ + Y+P ++ +PT +YSP +P + SP+Y+ P S
Sbjct: 1609 SPSYSPTSPSYSPTSPSYSPTSPSY----SPTSPSYSPT---SPSYSPTSPSYS-PSSPS 1660
Query: 209 PINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGG 388
++ S+SP S + T +P SP +P SP SP Y+ SP + G G
Sbjct: 1661 YSPSSPSYSP-SSPRYSPTSPTYSPTSPTYSPT---SPTYSPTSPTYSPTSPSYESG--G 1714
Query: 389 GPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
G + + Y+P+SP Y TSP YSP++P + +SP Y
Sbjct: 1715 GYSPSSPKYSPSSPTYSPTSP--SYSPTSPQYSPTSPQY 1751
Score = 54.7 bits (130), Expect = 3e-06
Identities = 53/197 (26%), Positives = 83/197 (42%), Gaps = 39/197 (19%)
Frame = +2
Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAYTGP 196
SP+ S Y+P + +P + +PTY+ YSP +P + SP+Y
Sbjct: 1658 SPSYSPSSPSYSPSSP-RYSPTSPTYSPTSPTYSPTSPTYSPT---SPTYSPTSPSYESG 1713
Query: 197 GGFSPIN-----ATASFSPIMSS---------------ADAAGRATPGRMTPG-RSPAGR 313
GG+SP + ++ ++SP S + ++ TP T SP G
Sbjct: 1714 GGYSPSSPKYSPSSPTYSPTSPSYSPTSPQYSPTSPQYSPSSPTYTPSSPTYNPTSPRGF 1773
Query: 314 FTPRMSPASPGYAAMSPRFGGG-------------LGGGPAGGAGAYAPASPAYMATSPG 454
+P+ SP SP Y+ SP + G + Y+P SP Y +SP
Sbjct: 1774 SSPQYSPTSPTYSPTSPSYTPSSPQYSPTSPTYTPSPSEQPGTSAQYSPTSPTYSPSSP- 1832
Query: 455 MGYSPSTPALAVSSPGY 505
YSP++P+ + SSP Y
Sbjct: 1833 -TYSPASPSYSPSSPTY 1848
[103][TOP]
>UniRef100_UPI00005A0B27 PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide
A isoform 18 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B27
Length = 1831
Score = 64.7 bits (156), Expect = 3e-09
Identities = 55/151 (36%), Positives = 78/151 (51%), Gaps = 6/151 (3%)
Frame = +2
Query: 71 GREGQRTPGRAFDAAMTPTYA-YSPA-RARTPGG-TAFSPAY--TGPGGFSPINATAS-F 232
GR G TPG A AM+P+Y+ SPA R+PGG T SP+Y T P +SP + + S
Sbjct: 1494 GRSGM-TPGAA-GGAMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSPS-YSPTSPSYSPT 1550
Query: 233 SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 412
SP S + T +P +P SP SP Y+ SP + + + +
Sbjct: 1551 SPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY--------SPTSPS 1602
Query: 413 YAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
Y+P SP+Y TSP YSP++P+ + +SP Y
Sbjct: 1603 YSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1631
Score = 55.8 bits (133), Expect = 2e-06
Identities = 44/169 (26%), Positives = 77/169 (45%), Gaps = 11/169 (6%)
Frame = +2
Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARAR----TPGGTAFSPA 184
SP+ + Y+P ++ +P+Y+ YSP+R +P + SP+
Sbjct: 1628 SPSYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPNYSPSRPNYTPTSPSYSPTSPS 1686
Query: 185 Y--TGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAM 358
Y T P ++P++ S +P S + T + +P +P+ SP SP Y+
Sbjct: 1687 YSPTSPN-YTPMSPNYSPTPSYSPSSPEYTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPT 1745
Query: 359 SPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
+P++ + + Y+P SP Y TSP YSP++P + +SP Y
Sbjct: 1746 TPKY--------SPTSPTYSPTSPVYTPTSP--KYSPTSPTYSPTSPKY 1784
Score = 55.5 bits (132), Expect = 2e-06
Identities = 48/166 (28%), Positives = 71/166 (42%), Gaps = 8/166 (4%)
Frame = +2
Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGFSP 211
SP+ + Y+P R TP + +P+Y SP +P T SP Y+ +SP
Sbjct: 1656 SPSYSPTSPNYSPSRPNY-TPTSPSYSPTSPSY--SPT---SPNYTPMSPNYSPTPSYSP 1709
Query: 212 INATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFG----- 373
+ + SP S T + +P TP+ SP SP Y+ SP +
Sbjct: 1710 SSPEYTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPK 1769
Query: 374 -GGLGGGPAGGAGAYAPASPAYMATSP-GMGYSPSTPALAVSSPGY 505
+ + Y+P SP Y TSP G YSP++P + +SP Y
Sbjct: 1770 YSPTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTY 1815
Score = 53.5 bits (127), Expect = 8e-06
Identities = 34/83 (40%), Positives = 45/83 (54%)
Frame = +2
Query: 257 AAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAY 436
AAGR+ MTPG + G +P SP SP Y SP GG + +Y+P SP+Y
Sbjct: 1492 AAGRSG---MTPGAA-GGAMSPSYSPTSPAYEPRSP-------GGYTPQSPSYSPTSPSY 1540
Query: 437 MATSPGMGYSPSTPALAVSSPGY 505
TSP YSP++P + +SP Y
Sbjct: 1541 SPTSP--SYSPTSPNYSPTSPSY 1561
[104][TOP]
>UniRef100_Q9BIT7 Major ampullate spidroin 2-like protein (Fragment) n=1 Tax=Nephila
inaurata madagascariensis RepID=Q9BIT7_9ARAC
Length = 1953
Score = 64.7 bits (156), Expect = 3e-09
Identities = 56/171 (32%), Positives = 67/171 (39%), Gaps = 5/171 (2%)
Frame = +2
Query: 5 AAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPA 184
AAA+A R P GY PG++G PG A AA + Y R PG A
Sbjct: 112 AAAAAAAGRGPG------GYGPGQQGPGGPGAAAAAAGSEGYGPGQQGPRGPGAAA---- 161
Query: 185 YTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSP 364
GPGG+ P AS + ++ G PG+ PG A P PG S
Sbjct: 162 -AGPGGYGPGQQGASAAASAAAGRGPGGYGPGQQGPGGPSAAAAGP--GGYGPGQQGPSA 218
Query: 365 RFGGGLGGGPAG-GAGAYAPASP--AYMATSPGMGYSPST--PALAVSSPG 502
G GP G G G P P A A PG GY P P A ++ G
Sbjct: 219 AAAAAAGSGPGGYGPGQQGPGGPGAAAAAAGPG-GYGPGQQGPGAAAAAAG 268
Score = 62.8 bits (151), Expect = 1e-08
Identities = 58/187 (31%), Positives = 73/187 (39%), Gaps = 21/187 (11%)
Frame = +2
Query: 5 AAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPA 184
AAA+A P GY PG++G G A AA Y P + + PGG + A
Sbjct: 1515 AAAAAAAGTGPG------GYGPGQQGPGGSGAAAAAAGRGPGGYGPGQ-QGPGGPGAAAA 1567
Query: 185 YTGPGGFSPINATASFSPIMSSADAAGRATPGRMTP----------GRSPAGRFTPRMSP 334
GPGG+ P + ++ G PG+ P GR P G + P
Sbjct: 1568 AAGPGGYGPGQQGPGAAAAAAAGSGPGGYGPGQQGPGGPGAAAAAAGRGPGGYGPGQQGP 1627
Query: 335 ASPGYAAMSPRFGGGLGGGPA----GGAGAYAPASPAYMATSPGMGYSPST-------PA 481
PG AA + G G GP GG+GA A AS PG GY P A
Sbjct: 1628 GGPGAAAAAAAGRGPGGYGPGQQGPGGSGAAAAAS----GRGPG-GYGPGQQGPGGPGAA 1682
Query: 482 LAVSSPG 502
A + PG
Sbjct: 1683 AAAAGPG 1689
Score = 62.0 bits (149), Expect = 2e-08
Identities = 51/171 (29%), Positives = 65/171 (38%), Gaps = 5/171 (2%)
Frame = +2
Query: 5 AAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPA 184
AAA+A R P GY PG++G G A AA Y P + + PGG + A
Sbjct: 511 AAAAAAAGRGPG------GYGPGQQGPGGSGAAAAAAGRGPGGYGPGQ-QGPGGPGAAAA 563
Query: 185 YTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSP 364
GPGG+ P + ++ AG PG+ PG A PG
Sbjct: 564 AAGPGGYGPGQQGTGAAAAAAAGSGAGGYGPGQQGPGGPGAAAAAAGPGGYGPGQQGPGA 623
Query: 365 RFGGGLGGGPAG-GAGAYAPASPAYMATSPGMG-YSPSTP---ALAVSSPG 502
G GP G G G P + A + G G Y P A A +S G
Sbjct: 624 AAAAAAGSGPGGYGPGQQGPGGSSAAAAAAGPGRYGPGQQGPGAAAAASAG 674
Score = 60.8 bits (146), Expect = 5e-08
Identities = 60/184 (32%), Positives = 75/184 (40%), Gaps = 18/184 (9%)
Frame = +2
Query: 5 AAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAM-TPTYAYSPARARTPGGTA--- 172
AAA+A +A S GY P ++G PG A AA Y P R + PG TA
Sbjct: 38 AAAAAAVAPS--------GYGPSQQGPSGPGAATAAAAGRGPEGYGP-RQQGPGATAAAA 88
Query: 173 ----FSPAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPG-RSPAGRFTPRMSPA 337
+ P GPGG+ P P ++A AAGR PG PG + P G +
Sbjct: 89 GPGGYGPRQQGPGGYGP----GQQGPGAAAAAAAGRG-PGGYGPGQQGPGGPGAAAAAAG 143
Query: 338 SPGY--AAMSPRFGGGLGGGPAG-GAGAYAPASPAYMATSPGMG------YSPSTPALAV 490
S GY PR G GP G G G ++ A A G G P P+ A
Sbjct: 144 SEGYGPGQQGPRGPGAAAAGPGGYGPGQQGASAAASAAAGRGPGGYGPGQQGPGGPSAAA 203
Query: 491 SSPG 502
+ PG
Sbjct: 204 AGPG 207
Score = 60.5 bits (145), Expect = 6e-08
Identities = 57/182 (31%), Positives = 71/182 (39%), Gaps = 16/182 (8%)
Frame = +2
Query: 5 AAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAM-TPTYAYSPARA----RTPGGT 169
AAA+A R P GY PG++G PG A AA Y P + + PGG
Sbjct: 1095 AAAAAAAGRGPG------GYGPGQQGPGGPGAAAAAAAGRGPGGYGPGQQGPGQQGPGGP 1148
Query: 170 AFSPAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGY 349
+ A GPGG+ P + ++ AG PG+ PG A PG
Sbjct: 1149 GAAAAAAGPGGYGPGQQGTGAAAAAAAGSGAGGYGPGQQGPGGPGAAAAAAGPGGYGPGQ 1208
Query: 350 ----AAMSPRFGGGLGG------GPAGGAGAYAPASPAYMATSPG-MGYSPSTPALAVSS 496
AA + G G GG GP G + A A A P PG G + A A S
Sbjct: 1209 QGPGAAAAAAAGSGPGGYGPGQQGPGGSSAAAAAAGPG--RYGPGQQGPGAAAAAAAGSG 1266
Query: 497 PG 502
PG
Sbjct: 1267 PG 1268
Score = 60.5 bits (145), Expect = 6e-08
Identities = 48/160 (30%), Positives = 60/160 (37%), Gaps = 6/160 (3%)
Frame = +2
Query: 8 AASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAY 187
AA+A R P GY PG++G G A AA Y P + + PGG + A
Sbjct: 1794 AAAAAAGRGPG------GYGPGQQGPGGSGAAAAAAGRGPGGYGPGQ-QGPGGPGAAAAA 1846
Query: 188 TGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPR 367
GPGG+ P + ++ AG PG+ PG A PG
Sbjct: 1847 AGPGGYGPGQQGTGAAAAAAAGSGAGGYGPGQQGPGGPGAAAAAAGPGGYGPGQQGPGAA 1906
Query: 368 FGGGLGGGPAG-GAGAYAPASPAYMATS-----PGMGYSP 469
G GP G G G P P A + PG GY P
Sbjct: 1907 AAAAAGSGPGGYGPGQQGPGGPGAAAAAAAGRGPG-GYGP 1945
Score = 60.1 bits (144), Expect = 8e-08
Identities = 56/159 (35%), Positives = 69/159 (43%), Gaps = 5/159 (3%)
Frame = +2
Query: 8 AASARIARSPAMPESERGYTPGREGQRTPGRAFDAAM-TPTYAYSPARARTPGGTAFSPA 184
AA+A R P GY PG++G PG A AA Y P + + PGG + A
Sbjct: 262 AAAAAAGRGPG------GYGPGQQGPGGPGAAAAAAAGRGPGGYGPGQ-QGPGGPGAAAA 314
Query: 185 YTGPGGFSP----INATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYA 352
GPGG+ P P ++A AAGR PG PG+ G+ P S A+ A
Sbjct: 315 AAGPGGYGPGGYGPGQQGPGGPGAAAAAAAGRG-PGGYGPGQQGPGQQGPGGSGAAAAAA 373
Query: 353 AMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSP 469
P GG G G G G A A+ A PG GY P
Sbjct: 374 GRGP---GGYGPGQQGPGGPGAAAA----AAGPG-GYGP 404
Score = 60.1 bits (144), Expect = 8e-08
Identities = 55/181 (30%), Positives = 68/181 (37%), Gaps = 15/181 (8%)
Frame = +2
Query: 5 AAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPA 184
AAA+A P GY PG++G PG A AA + PGG + A
Sbjct: 711 AAAAAAAGSGPG------GYGPGQQGPGGPGAAAAAAAGRGPGGYGQGQQGPGGPGAAAA 764
Query: 185 YTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRS------------PAGRFTPRM 328
GPGG+ P + ++ G PG+ PGRS P G +
Sbjct: 765 AAGPGGYGPGQQGPGAAAAAAAGSGPGGYGPGQQGPGRSGAAAAAAAAGRGPGGYGPGQQ 824
Query: 329 SPASPGYAAMSPRFGGGLGG--GPAGGAGAYAPASP-AYMATSPGMGYSPSTPALAVSSP 499
P PG AA + GG G GP A A A P Y G G S + A A P
Sbjct: 825 GPGGPGAAAAAAGPGGYGPGQQGPGAAAAASAGRGPGGYGPGQQGPGGSGAAAAAAGRGP 884
Query: 500 G 502
G
Sbjct: 885 G 885
Score = 60.1 bits (144), Expect = 8e-08
Identities = 50/162 (30%), Positives = 65/162 (40%), Gaps = 14/162 (8%)
Frame = +2
Query: 59 GYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGFSPINATASFSP 238
GY PG++G T A AA + Y P + + PGG + A GPGG+ P +
Sbjct: 1159 GYGPGQQG--TGAAAAAAAGSGAGGYGPGQ-QGPGGPGAAAAAAGPGGYGPGQQGPGAAA 1215
Query: 239 IMSSADAAGRATPGRMTPGRSPA-------GRFTPRMSPASPGYAAMSPRFGGGLGGGPA 397
++ G PG+ PG S A GR+ P AA + GG G G
Sbjct: 1216 AAAAGSGPGGYGPGQQGPGGSSAAAAAAGPGRYGPGQQGPGAAAAAAAGSGPGGYGPGQQ 1275
Query: 398 GGAGAYAPASPAYMATSPGMGYSPST-------PALAVSSPG 502
G G A A+ A PG GY P A A + PG
Sbjct: 1276 GPGGPGAAAAAAAAGRGPG-GYGPGQQGPGGPGAAAAAAGPG 1316
Score = 60.1 bits (144), Expect = 8e-08
Identities = 55/182 (30%), Positives = 71/182 (39%), Gaps = 16/182 (8%)
Frame = +2
Query: 5 AAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTY--AYSPARARTPGGTAFS 178
AAA+A P GY PG++G PG A AA Y P + + PGG +
Sbjct: 1257 AAAAAAAGSGPG------GYGPGQQGPGGPGAAAAAAAAGRGPGGYGPGQ-QGPGGPGAA 1309
Query: 179 PAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTP-----------GRSPAGRFTPR 325
A GPGG+ P + ++ G PG+ P GR P G +
Sbjct: 1310 AAAAGPGGYGPGQQGPGAAAAAAAGSGPGGYGPGQQGPGGPGAAAAAAAGRGPGGYGQGQ 1369
Query: 326 MSPASPGYAAMSPRFGGGLGG--GPAGGAGAYAPASP-AYMATSPGMGYSPSTPALAVSS 496
P PG AA + GG G GP A A A + P Y G G S + A A +
Sbjct: 1370 QGPGGPGAAAAAAGPGGYGPGQQGPGAAAAAAAGSGPGGYGPGQQGPGRSGAAAAAAAAG 1429
Query: 497 PG 502
G
Sbjct: 1430 RG 1431
Score = 60.1 bits (144), Expect = 8e-08
Identities = 55/181 (30%), Positives = 68/181 (37%), Gaps = 15/181 (8%)
Frame = +2
Query: 5 AAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPA 184
AAA+A P GY PG++G PG A AA + PGG + A
Sbjct: 1327 AAAAAAAGSGPG------GYGPGQQGPGGPGAAAAAAAGRGPGGYGQGQQGPGGPGAAAA 1380
Query: 185 YTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRS------------PAGRFTPRM 328
GPGG+ P + ++ G PG+ PGRS P G +
Sbjct: 1381 AAGPGGYGPGQQGPGAAAAAAAGSGPGGYGPGQQGPGRSGAAAAAAAAGRGPGGYGPGQQ 1440
Query: 329 SPASPGYAAMSPRFGGGLGG--GPAGGAGAYAPASP-AYMATSPGMGYSPSTPALAVSSP 499
P PG AA + GG G GP A A A P Y G G S + A A P
Sbjct: 1441 GPGGPGAAAAAAGPGGYGPGQQGPGAAAAASAGRGPGGYGPGQQGPGGSGAAAAAAGRGP 1500
Query: 500 G 502
G
Sbjct: 1501 G 1501
Score = 59.7 bits (143), Expect = 1e-07
Identities = 51/159 (32%), Positives = 61/159 (38%), Gaps = 7/159 (4%)
Frame = +2
Query: 5 AAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARART--PGGTAFS 178
AAA+A R P GY PG++G G A AA Y P + PG A +
Sbjct: 1466 AAAAASAGRGPG------GYGPGQQGPGGSGAAAAAAGRGPGGYGPGQQGPGGPGAAAAA 1519
Query: 179 PAYTGPGGFSPINATASFSPIMSSADAAGRAT----PGRMTPGRSPAGRFTPRMSPASPG 346
A TGPGG+ P S ++A AAGR PG+ PG A PG
Sbjct: 1520 AAGTGPGGYGPGQQGPGGSG--AAAAAAGRGPGGYGPGQQGPGGPGAAAAAAGPGGYGPG 1577
Query: 347 YAAMSPRFGGGLGGGPAG-GAGAYAPASPAYMATSPGMG 460
G GP G G G P P A + G G
Sbjct: 1578 QQGPGAAAAAAAGSGPGGYGPGQQGPGGPGAAAAAAGRG 1616
Score = 59.3 bits (142), Expect = 1e-07
Identities = 52/162 (32%), Positives = 67/162 (41%), Gaps = 14/162 (8%)
Frame = +2
Query: 59 GYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGFSPINATASFSP 238
GY PG++G T A AA + Y P + + PGG + A GPGG+ P +
Sbjct: 569 GYGPGQQG--TGAAAAAAAGSGAGGYGPGQ-QGPGGPGAAAAAAGPGGYGPGQQGPGAAA 625
Query: 239 IMSSADAAGRATPGRMTPGRSPA-------GRFTPRMSPASPGYAAMSPRFGGGLGGGPA 397
++ G PG+ PG S A GR+ P AA + R GG G G
Sbjct: 626 AAAAGSGPGGYGPGQQGPGGSSAAAAAAGPGRYGPGQQGPGAAAAASAGRGPGGYGPGQQ 685
Query: 398 GGAGAYAPASPAYMATSPGMGYSP-------STPALAVSSPG 502
G G A A+ A PG GY P + A A S PG
Sbjct: 686 GPGGPGAAAA----AAGPG-GYGPGQQGPGAAAAAAAGSGPG 722
Score = 58.5 bits (140), Expect = 2e-07
Identities = 58/189 (30%), Positives = 73/189 (38%), Gaps = 23/189 (12%)
Frame = +2
Query: 5 AAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTY--AYSPARARTPGGTAFS 178
AAA+A P GY PG++G G A AA Y P + + PGG +
Sbjct: 1396 AAAAAAAGSGPG------GYGPGQQGPGRSGAAAAAAAAGRGPGGYGPGQ-QGPGGPGAA 1448
Query: 179 PAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTP----------GRSPAGRFTPRM 328
A GPGG+ P + S+ G PG+ P GR P G +
Sbjct: 1449 AAAAGPGGYGPGQQGPGAAAAASAGRGPGGYGPGQQGPGGSGAAAAAAGRGPGGYGPGQQ 1508
Query: 329 SPASPGYAAMSPRFGGGLGGGPA----GGAGAYAPASPAYMATSPGMGYSPST------- 475
P PG AA + G G GP GG+GA A A+ PG GY P
Sbjct: 1509 GPGGPGAAAAAAAGTGPGGYGPGQQGPGGSGAAAAAA----GRGPG-GYGPGQQGPGGPG 1563
Query: 476 PALAVSSPG 502
A A + PG
Sbjct: 1564 AAAAAAGPG 1572
Score = 58.5 bits (140), Expect = 2e-07
Identities = 56/187 (29%), Positives = 65/187 (34%), Gaps = 21/187 (11%)
Frame = +2
Query: 5 AAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSP-------------- 142
AAA+A P GY PG++G PG A AA Y P
Sbjct: 1583 AAAAAAAGSGPG------GYGPGQQGPGGPGAAAAAAGRGPGGYGPGQQGPGGPGAAAAA 1636
Query: 143 ARARTPGGTAFSPAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTP 322
A R PGG + P GPGG A + P G PG P G
Sbjct: 1637 AAGRGPGG--YGPGQQGPGGSGAAAAASGRGPGGYGPGQQGPGGPGAAAAAAGPGGYGPG 1694
Query: 323 RMSPASPGYAAMSPRFGGGLG------GGPAGGAGAYAPASP-AYMATSPGMGYSPSTPA 481
+ P + AA + R GG G GGP A A A P Y G G S + A
Sbjct: 1695 QQGPGAAAAAAAAGRGPGGYGPGQQGPGGPGAAAAAAAGRGPGGYGPGQQGPGGSGAAAA 1754
Query: 482 LAVSSPG 502
A PG
Sbjct: 1755 AAGRGPG 1761
Score = 58.2 bits (139), Expect = 3e-07
Identities = 59/172 (34%), Positives = 73/172 (42%), Gaps = 6/172 (3%)
Frame = +2
Query: 5 AAASARIARSPAMPESERGYTPGREG--QRTPG---RAFDAAMTPTYAYSPARARTPGGT 169
AAA+A R P GY PG++G Q+ PG A AA Y P + + PGG
Sbjct: 899 AAAAAAAGRGPG------GYGPGQQGPGQQGPGGSGAAAAAAGRGPGGYGPGQ-QGPGGP 951
Query: 170 AFSPAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGY 349
+ A GPGG+ P P ++A AAG + PG PG + P PG
Sbjct: 952 GAAAAAAGPGGYGP----GQQGPGAAAAAAAG-SGPGGYGPG---------QQGPGGPGA 997
Query: 350 AAMSPRFG-GGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPG 502
AA + G GG G G G G A A+ A PG GY P PG
Sbjct: 998 AAAAAGRGPGGYGPGQQGPGGPGAAAAAA-AGRGPG-GYGPGQQGPGQQGPG 1047
Score = 57.8 bits (138), Expect = 4e-07
Identities = 57/186 (30%), Positives = 64/186 (34%), Gaps = 20/186 (10%)
Frame = +2
Query: 5 AAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA---YSP----------- 142
AAA+A R P GY PG++G PG A AA Y Y P
Sbjct: 286 AAAAAAAGRGPG------GYGPGQQGPGGPGAAAAAAGPGGYGPGGYGPGQQGPGGPGAA 339
Query: 143 ---ARARTPGGTA---FSPAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSP 304
A R PGG P GPGG A A P G PG P
Sbjct: 340 AAAAAGRGPGGYGPGQQGPGQQGPGGSGAAAAAAGRGPGGYGPGQQGPGGPGAAAAAAGP 399
Query: 305 AGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPAL 484
G + P + AA + R GG G G G G A A+ A PG GY P
Sbjct: 400 GGYGPGQQGPGAAAAAAAAGRGPGGYGPGQQGPGGPGAAAAAA-AGRGPG-GYGPGQQGP 457
Query: 485 AVSSPG 502
PG
Sbjct: 458 GQQGPG 463
Score = 57.4 bits (137), Expect = 5e-07
Identities = 55/183 (30%), Positives = 62/183 (33%), Gaps = 17/183 (9%)
Frame = +2
Query: 5 AAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSP-------------- 142
AAA+A P GY PG++G PG A AA Y P
Sbjct: 972 AAAAAAAGSGPG------GYGPGQQGPGGPGAAAAAAGRGPGGYGPGQQGPGGPGAAAAA 1025
Query: 143 ARARTPGGTA---FSPAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGR 313
A R PGG P GPGG A A P G PG P G
Sbjct: 1026 AAGRGPGGYGPGQQGPGQQGPGGSGAAAAAAGRGPGGYGPGQQGPGGPGAAAAAAGPGGY 1085
Query: 314 FTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVS 493
+ P + AA + R GG G G G G A A+ A PG GY P
Sbjct: 1086 GPGQQGPGAAAAAAAAGRGPGGYGPGQQGPGGPGAAAAAA-AGRGPG-GYGPGQQGPGQQ 1143
Query: 494 SPG 502
PG
Sbjct: 1144 GPG 1146
Score = 57.0 bits (136), Expect = 7e-07
Identities = 55/176 (31%), Positives = 64/176 (36%), Gaps = 10/176 (5%)
Frame = +2
Query: 5 AAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTA---F 175
AAA+A R P GY PG++G PG A AA R PGG
Sbjct: 412 AAAAAAAGRGPG------GYGPGQQGPGGPGAAAAAAA----------GRGPGGYGPGQQ 455
Query: 176 SPAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAA 355
P GPGG A A P G PG P G + P + AA
Sbjct: 456 GPGQQGPGGSGAAAAAAGRGPGGYGPGQQGPGGPGAAAAAAGPGGYGPGQQGPGAAAAAA 515
Query: 356 MSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPST-------PALAVSSPG 502
+ R GG G G G G+ A A+ A PG GY P A A + PG
Sbjct: 516 AAGRGPGGYGPGQQGPGGSGAAAAAA--GRGPG-GYGPGQQGPGGPGAAAAAAGPG 568
Score = 56.6 bits (135), Expect = 9e-07
Identities = 61/200 (30%), Positives = 72/200 (36%), Gaps = 35/200 (17%)
Frame = +2
Query: 8 AASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTY----------AYSPARART 157
AA+A R P GY PG++G PG A AA Y A + A R
Sbjct: 467 AAAAAAGRGPG------GYGPGQQGPGGPGAAAAAAGPGGYGPGQQGPGAAAAAAAAGRG 520
Query: 158 PGGTAFSPAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPA 337
PGG + P GPGG A A P G PG P G + P
Sbjct: 521 PGG--YGPGQQGPGGSGAAAAAAGRGPGGYGPGQQGPGGPGAAAAAAGPGG-YGPGQQGT 577
Query: 338 SPGYAAMSPRFGGGLG------GGP-----AGGAGAYAP-------ASPAYMATSPGMGY 463
AA + GG G GGP A G G Y P A+ A + PG GY
Sbjct: 578 GAAAAAAAGSGAGGYGPGQQGPGGPGAAAAAAGPGGYGPGQQGPGAAAAAAAGSGPG-GY 636
Query: 464 SP-------STPALAVSSPG 502
P S+ A A + PG
Sbjct: 637 GPGQQGPGGSSAAAAAAGPG 656
Score = 56.6 bits (135), Expect = 9e-07
Identities = 53/187 (28%), Positives = 68/187 (36%), Gaps = 21/187 (11%)
Frame = +2
Query: 5 AAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTY--AYSPARARTPGGTAFS 178
AAA+A P GY PG++G G A AA Y P + + PGG +
Sbjct: 780 AAAAAAAGSGPG------GYGPGQQGPGRSGAAAAAAAAGRGPGGYGPGQ-QGPGGPGAA 832
Query: 179 PAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTP----------GRSPAGRFTPRM 328
A GPGG+ P + S+ G PG+ P GR P G +
Sbjct: 833 AAAAGPGGYGPGQQGPGAAAAASAGRGPGGYGPGQQGPGGSGAAAAAAGRGPGGYGPGQQ 892
Query: 329 SPASPGYAAMSPRFGGGLGGGPA-GGAGAYAPASPAYMATSPGMG--------YSPSTPA 481
P PG AA + G G GP G G P A + G G P P
Sbjct: 893 GPGGPGAAAAAAAGRGPGGYGPGQQGPGQQGPGGSGAAAAAAGRGPGGYGPGQQGPGGPG 952
Query: 482 LAVSSPG 502
A ++ G
Sbjct: 953 AAAAAAG 959
Score = 56.6 bits (135), Expect = 9e-07
Identities = 57/180 (31%), Positives = 66/180 (36%), Gaps = 15/180 (8%)
Frame = +2
Query: 8 AASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTY--------AYSPARARTPG 163
AA+A R P GY PG++G PG A AA Y A + A R PG
Sbjct: 1751 AAAAAAGRGPG------GYGPGQQGPGGPGAAAAAAGPGGYGPGQQGPGAAAAAAGRGPG 1804
Query: 164 GTAFSPAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASP 343
G + P GPGG A A P G PG P G + P
Sbjct: 1805 G--YGPGQQGPGGSGAAAAAAGRGPGGYGPGQQGPGGPGAAAAAAGPGG-YGPGQQGTGA 1861
Query: 344 GYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSP-------STPALAVSSPG 502
AA + GG G G G G A A+ A PG GY P + A A S PG
Sbjct: 1862 AAAAAAGSGAGGYGPGQQGPGGPGAAAA----AAGPG-GYGPGQQGPGAAAAAAAGSGPG 1916
Score = 56.2 bits (134), Expect = 1e-06
Identities = 55/173 (31%), Positives = 65/173 (37%), Gaps = 7/173 (4%)
Frame = +2
Query: 5 AAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPA 184
AAA+A R P GY PG++G PG A AA R PGG + P
Sbjct: 1701 AAAAAAAGRGPG------GYGPGQQGPGGPGAAAAAAA----------GRGPGG--YGPG 1742
Query: 185 YTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSP 364
GPGG A A P G PG P G + P + AA +
Sbjct: 1743 QQGPGGSGAAAAAAGRGPGGYGPGQQGPGGPGAAAAAAGPGGYGPGQQGPGAA--AAAAG 1800
Query: 365 RFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPST-------PALAVSSPG 502
R GG G G G G+ A A+ A PG GY P A A + PG
Sbjct: 1801 RGPGGYGPGQQGPGGSGAAAAAA--GRGPG-GYGPGQQGPGGPGAAAAAAGPG 1850
Score = 53.9 bits (128), Expect = 6e-06
Identities = 53/156 (33%), Positives = 68/156 (43%), Gaps = 8/156 (5%)
Frame = +2
Query: 59 GYTPGREGQRTPGRAFDAAM-TPTYAYSPARARTPGGTAFSPAYTGPGGFSPINATASFS 235
GY PG++G PG A AA + Y P + + PGG++ + A GPG + P
Sbjct: 1203 GYGPGQQG---PGAAAAAAAGSGPGGYGPGQ-QGPGGSSAAAAAAGPGRYGP----GQQG 1254
Query: 236 PIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGG------GPA 397
P ++A AAG + PG PG + P PG AA + G G GG GP
Sbjct: 1255 PGAAAAAAAG-SGPGGYGPG---------QQGPGGPGAAAAAAAAGRGPGGYGPGQQGPG 1304
Query: 398 GGAGAYAPASPAYMATSPG-MGYSPSTPALAVSSPG 502
G A A A P PG G + A A S PG
Sbjct: 1305 GPGAAAAAAGPG--GYGPGQQGPGAAAAAAAGSGPG 1338
[105][TOP]
>UniRef100_Q692F9 Major ampullate spidroin 2 (Fragment) n=1 Tax=Nephila clavipes
RepID=Q692F9_NEPCL
Length = 313
Score = 64.7 bits (156), Expect = 3e-09
Identities = 54/167 (32%), Positives = 70/167 (41%), Gaps = 1/167 (0%)
Frame = +2
Query: 5 AAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPA 184
AAA+A A P + GY PG++G PG +P+ P A A P
Sbjct: 35 AAAAAAAASGPGQ-QGPGGYGPGQQG---PGGYGPGQQSPS---GPGSAAAAAAAAAGPG 87
Query: 185 YTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTP-RMSPASPGYAAMS 361
GPGG+ P S P +SA AA A PG PG+ G + P + P+ PG AA +
Sbjct: 88 QQGPGGYGPGQQGPS-GPGSASA-AAAAAGPGGYGPGQQGPGGYAPGQQGPSGPGSAAAA 145
Query: 362 PRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPG 502
G GG G P A A++ GY P+ A PG
Sbjct: 146 AAARAGPGGYGPAQQGPSGPGIAASAASAGPGGYGPAQQGPAGYGPG 192
Score = 53.5 bits (127), Expect = 8e-06
Identities = 44/128 (34%), Positives = 56/128 (43%), Gaps = 13/128 (10%)
Frame = +2
Query: 158 PGGTAFSPAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPG------RSPAGRFT 319
PGG + P GPGG+ P S P ++A AA + PG+ PG + P G
Sbjct: 9 PGG--YGPGQQGPGGYGPGQQGPS-GPGSAAAAAAAASGPGQQGPGGYGPGQQGPGGYGP 65
Query: 320 PRMSPASPGYAAMSPRFGGGLG-GGPAG-GAGAYAPASP-----AYMATSPGMGYSPSTP 478
+ SP+ PG AA + G G GP G G G P+ P A A PG GY P
Sbjct: 66 GQQSPSGPGSAAAAAAAAAGPGQQGPGGYGPGQQGPSGPGSASAAAAAAGPG-GYGPGQQ 124
Query: 479 ALAVSSPG 502
+PG
Sbjct: 125 GPGGYAPG 132
[106][TOP]
>UniRef100_Q2VLH2 Major ampullate spidroin 2-like (Fragment) n=1 Tax=Nephila inaurata
madagascariensis RepID=Q2VLH2_9ARAC
Length = 2069
Score = 64.7 bits (156), Expect = 3e-09
Identities = 56/171 (32%), Positives = 67/171 (39%), Gaps = 5/171 (2%)
Frame = +2
Query: 5 AAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPA 184
AAA+A R P GY PG++G PG A AA + Y R PG A
Sbjct: 279 AAAAAAAGRGPG------GYGPGQQGPGGPGAAAAAAGSEGYGPGQQGPRGPGAAA---- 328
Query: 185 YTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSP 364
GPGG+ P AS + ++ G PG+ PG A P PG S
Sbjct: 329 -AGPGGYGPGQQGASAAASAAAGRGPGGYGPGQQGPGGPSAAAAGP--GGYGPGQQGPSA 385
Query: 365 RFGGGLGGGPAG-GAGAYAPASP--AYMATSPGMGYSPST--PALAVSSPG 502
G GP G G G P P A A PG GY P P A ++ G
Sbjct: 386 AAAAAAGSGPGGYGPGQQGPGGPGAAAAAAGPG-GYGPGQQGPGAAAAAAG 435
Score = 63.2 bits (152), Expect = 1e-08
Identities = 53/169 (31%), Positives = 67/169 (39%), Gaps = 14/169 (8%)
Frame = +2
Query: 5 AAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPA 184
AAA+A P GY PG++G G A AA Y P + + PGG + A
Sbjct: 1648 AAAAAAAGTGPG------GYGPGQQGPGGSGAAAAAAGRGPGGYGPGQ-QGPGGPGAAAA 1700
Query: 185 YTGPGGFSPINATASFSPIMSSADAAGRATPGRMTP----------GRSPAGRFTPRMSP 334
GPGG+ P + ++ G PG+ P GR P G + P
Sbjct: 1701 AAGPGGYGPGQQGPGAAAAAAAGSGPGGYGPGQQGPGGPGAAAAAAGRGPGGYGPGQQGP 1760
Query: 335 ASPGYAAMSPRFGGGLGGGPA----GGAGAYAPASPAYMATSPGMGYSP 469
PG AA + G G GP GG+GA A AS S GY P
Sbjct: 1761 GGPGAAAAAAAGRGPGGYGPGQQGPGGSGAAAAASGRGPGGSGPGGYGP 1809
Score = 62.0 bits (149), Expect = 2e-08
Identities = 51/171 (29%), Positives = 65/171 (38%), Gaps = 5/171 (2%)
Frame = +2
Query: 5 AAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPA 184
AAA+A R P GY PG++G G A AA Y P + + PGG + A
Sbjct: 661 AAAAAAAGRGPG------GYGPGQQGPGGSGAAAAAAGRGPGGYGPGQ-QGPGGPGAAAA 713
Query: 185 YTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSP 364
GPGG+ P + ++ AG PG+ PG A PG
Sbjct: 714 AAGPGGYGPGQQGTGAAAAAAAGSGAGGYGPGQQGPGGPGAAAAAAGPGGYGPGQQGPGA 773
Query: 365 RFGGGLGGGPAG-GAGAYAPASPAYMATSPGMG-YSPSTP---ALAVSSPG 502
G GP G G G P + A + G G Y P A A +S G
Sbjct: 774 AAAAAAGSGPGGYGPGQQGPGGSSAAAAAAGPGRYGPGQQGPGAAAAASAG 824
Score = 60.8 bits (146), Expect = 5e-08
Identities = 60/184 (32%), Positives = 75/184 (40%), Gaps = 18/184 (9%)
Frame = +2
Query: 5 AAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAM-TPTYAYSPARARTPGGTA--- 172
AAA+A +A S GY P ++G PG A AA Y P R + PG TA
Sbjct: 205 AAAAAAVAPS--------GYGPSQQGPSGPGAATAAAAGRGPEGYGP-RQQGPGATAAAA 255
Query: 173 ----FSPAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPG-RSPAGRFTPRMSPA 337
+ P GPGG+ P P ++A AAGR PG PG + P G +
Sbjct: 256 GPGGYGPRQQGPGGYGP----GQQGPGAAAAAAAGRG-PGGYGPGQQGPGGPGAAAAAAG 310
Query: 338 SPGY--AAMSPRFGGGLGGGPAG-GAGAYAPASPAYMATSPGMG------YSPSTPALAV 490
S GY PR G GP G G G ++ A A G G P P+ A
Sbjct: 311 SEGYGPGQQGPRGPGAAAAGPGGYGPGQQGASAAASAAAGRGPGGYGPGQQGPGGPSAAA 370
Query: 491 SSPG 502
+ PG
Sbjct: 371 AGPG 374
Score = 60.5 bits (145), Expect = 6e-08
Identities = 57/182 (31%), Positives = 71/182 (39%), Gaps = 16/182 (8%)
Frame = +2
Query: 5 AAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAM-TPTYAYSPARA----RTPGGT 169
AAA+A R P GY PG++G PG A AA Y P + + PGG
Sbjct: 1228 AAAAAAAGRGPG------GYGPGQQGPGGPGAAAAAAAGRGPGGYGPGQQGPGQQGPGGP 1281
Query: 170 AFSPAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGY 349
+ A GPGG+ P + ++ AG PG+ PG A PG
Sbjct: 1282 GAAAAAAGPGGYGPGQQGTGAAAAAAAGSGAGGYGPGQQGPGGPGAAAAAAGPGGYGPGQ 1341
Query: 350 ----AAMSPRFGGGLGG------GPAGGAGAYAPASPAYMATSPG-MGYSPSTPALAVSS 496
AA + G G GG GP G + A A A P PG G + A A S
Sbjct: 1342 QGPGAAAAAAAGSGPGGYGPGQQGPGGSSAAAAAAGPG--RYGPGQQGPGAAAAAAAGSG 1399
Query: 497 PG 502
PG
Sbjct: 1400 PG 1401
Score = 60.5 bits (145), Expect = 6e-08
Identities = 48/160 (30%), Positives = 60/160 (37%), Gaps = 6/160 (3%)
Frame = +2
Query: 8 AASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAY 187
AA+A R P GY PG++G G A AA Y P + + PGG + A
Sbjct: 1910 AAAAAAGRGPG------GYGPGQQGPGGSGAAAAAAGRGPGGYGPGQ-QGPGGPGAAAAA 1962
Query: 188 TGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPR 367
GPGG+ P + ++ AG PG+ PG A PG
Sbjct: 1963 AGPGGYGPGQQGTGAAAAAAAGSGAGGYGPGQQGPGGPGAAAAAAGPGGYGPGQQGPGAA 2022
Query: 368 FGGGLGGGPAG-GAGAYAPASPAYMATS-----PGMGYSP 469
G GP G G G P P A + PG GY P
Sbjct: 2023 AAAAAGSGPGGYGPGQQGPGGPGAAAAAAAGRGPG-GYGP 2061
Score = 60.1 bits (144), Expect = 8e-08
Identities = 55/181 (30%), Positives = 68/181 (37%), Gaps = 15/181 (8%)
Frame = +2
Query: 5 AAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPA 184
AAA+A P GY PG++G PG A AA + PGG + A
Sbjct: 861 AAAAAAAGSGPG------GYGPGQQGPGGPGAAAAAAAGRGPGGYGQGQQGPGGPGAAAA 914
Query: 185 YTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRS------------PAGRFTPRM 328
GPGG+ P + ++ G PG+ PGRS P G +
Sbjct: 915 AAGPGGYGPGQQGPGAAAAAAAGSGPGGYGPGQQGPGRSGAAAAAAAAGRGPGGYGPGQQ 974
Query: 329 SPASPGYAAMSPRFGGGLGG--GPAGGAGAYAPASP-AYMATSPGMGYSPSTPALAVSSP 499
P PG AA + GG G GP A A A P Y G G S + A A P
Sbjct: 975 GPGGPGAAAAAAGPGGYGPGQQGPGAAAAASAGRGPGGYGPGQQGPGGSGAAAAAAGRGP 1034
Query: 500 G 502
G
Sbjct: 1035 G 1035
Score = 60.1 bits (144), Expect = 8e-08
Identities = 50/162 (30%), Positives = 65/162 (40%), Gaps = 14/162 (8%)
Frame = +2
Query: 59 GYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGFSPINATASFSP 238
GY PG++G T A AA + Y P + + PGG + A GPGG+ P +
Sbjct: 1292 GYGPGQQG--TGAAAAAAAGSGAGGYGPGQ-QGPGGPGAAAAAAGPGGYGPGQQGPGAAA 1348
Query: 239 IMSSADAAGRATPGRMTPGRSPA-------GRFTPRMSPASPGYAAMSPRFGGGLGGGPA 397
++ G PG+ PG S A GR+ P AA + GG G G
Sbjct: 1349 AAAAGSGPGGYGPGQQGPGGSSAAAAAAGPGRYGPGQQGPGAAAAAAAGSGPGGYGPGQQ 1408
Query: 398 GGAGAYAPASPAYMATSPGMGYSPST-------PALAVSSPG 502
G G A A+ A PG GY P A A + PG
Sbjct: 1409 GPGGPGAAAAAAAAGRGPG-GYGPGQQGPGGPGAAAAAAGPG 1449
Score = 60.1 bits (144), Expect = 8e-08
Identities = 55/182 (30%), Positives = 71/182 (39%), Gaps = 16/182 (8%)
Frame = +2
Query: 5 AAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTY--AYSPARARTPGGTAFS 178
AAA+A P GY PG++G PG A AA Y P + + PGG +
Sbjct: 1390 AAAAAAAGSGPG------GYGPGQQGPGGPGAAAAAAAAGRGPGGYGPGQ-QGPGGPGAA 1442
Query: 179 PAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTP-----------GRSPAGRFTPR 325
A GPGG+ P + ++ G PG+ P GR P G +
Sbjct: 1443 AAAAGPGGYGPGQQGPGAAAAAAAGSGPGGYGPGQQGPGGPGAAAAAAAGRGPGGYGQGQ 1502
Query: 326 MSPASPGYAAMSPRFGGGLGG--GPAGGAGAYAPASP-AYMATSPGMGYSPSTPALAVSS 496
P PG AA + GG G GP A A A + P Y G G S + A A +
Sbjct: 1503 QGPGGPGAAAAAAGPGGYGPGQQGPGAAAAAAAGSGPGGYGPGQQGPGRSGAAAAAAAAG 1562
Query: 497 PG 502
G
Sbjct: 1563 RG 1564
Score = 60.1 bits (144), Expect = 8e-08
Identities = 55/181 (30%), Positives = 68/181 (37%), Gaps = 15/181 (8%)
Frame = +2
Query: 5 AAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPA 184
AAA+A P GY PG++G PG A AA + PGG + A
Sbjct: 1460 AAAAAAAGSGPG------GYGPGQQGPGGPGAAAAAAAGRGPGGYGQGQQGPGGPGAAAA 1513
Query: 185 YTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRS------------PAGRFTPRM 328
GPGG+ P + ++ G PG+ PGRS P G +
Sbjct: 1514 AAGPGGYGPGQQGPGAAAAAAAGSGPGGYGPGQQGPGRSGAAAAAAAAGRGPGGYGPGQQ 1573
Query: 329 SPASPGYAAMSPRFGGGLGG--GPAGGAGAYAPASP-AYMATSPGMGYSPSTPALAVSSP 499
P PG AA + GG G GP A A A P Y G G S + A A P
Sbjct: 1574 GPGGPGAAAAAAGPGGYGPGQQGPGAAAAASAGRGPGGYGPGQQGPGGSGAAAAAAGRGP 1633
Query: 500 G 502
G
Sbjct: 1634 G 1634
Score = 59.7 bits (143), Expect = 1e-07
Identities = 51/159 (32%), Positives = 61/159 (38%), Gaps = 7/159 (4%)
Frame = +2
Query: 5 AAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARART--PGGTAFS 178
AAA+A R P GY PG++G G A AA Y P + PG A +
Sbjct: 1599 AAAAASAGRGPG------GYGPGQQGPGGSGAAAAAAGRGPGGYGPGQQGPGGPGAAAAA 1652
Query: 179 PAYTGPGGFSPINATASFSPIMSSADAAGRAT----PGRMTPGRSPAGRFTPRMSPASPG 346
A TGPGG+ P S ++A AAGR PG+ PG A PG
Sbjct: 1653 AAGTGPGGYGPGQQGPGGSG--AAAAAAGRGPGGYGPGQQGPGGPGAAAAAAGPGGYGPG 1710
Query: 347 YAAMSPRFGGGLGGGPAG-GAGAYAPASPAYMATSPGMG 460
G GP G G G P P A + G G
Sbjct: 1711 QQGPGAAAAAAAGSGPGGYGPGQQGPGGPGAAAAAAGRG 1749
Score = 59.3 bits (142), Expect = 1e-07
Identities = 52/162 (32%), Positives = 67/162 (41%), Gaps = 14/162 (8%)
Frame = +2
Query: 59 GYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGFSPINATASFSP 238
GY PG++G T A AA + Y P + + PGG + A GPGG+ P +
Sbjct: 719 GYGPGQQG--TGAAAAAAAGSGAGGYGPGQ-QGPGGPGAAAAAAGPGGYGPGQQGPGAAA 775
Query: 239 IMSSADAAGRATPGRMTPGRSPA-------GRFTPRMSPASPGYAAMSPRFGGGLGGGPA 397
++ G PG+ PG S A GR+ P AA + R GG G G
Sbjct: 776 AAAAGSGPGGYGPGQQGPGGSSAAAAAAGPGRYGPGQQGPGAAAAASAGRGPGGYGPGQQ 835
Query: 398 GGAGAYAPASPAYMATSPGMGYSP-------STPALAVSSPG 502
G G A A+ A PG GY P + A A S PG
Sbjct: 836 GPGGPGAAAA----AAGPG-GYGPGQQGPGAAAAAAAGSGPG 872
Score = 58.9 bits (141), Expect = 2e-07
Identities = 57/186 (30%), Positives = 65/186 (34%), Gaps = 20/186 (10%)
Frame = +2
Query: 5 AAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA---YSP----------- 142
AAA+A A + A GY PG++G PG A AA Y Y P
Sbjct: 430 AAAAAGQAAAAAAGRGPGGYGPGQQGPGGPGAAAAAAGPGGYGPGGYGPGQQGPGGPGAA 489
Query: 143 ---ARARTPGGTA---FSPAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSP 304
A R PGG P GPGG A A P G PG P
Sbjct: 490 AAAAAGRGPGGYGPGQQGPGQQGPGGSGAAAAAAGRGPGGYGPGQQGPGGPGAAAAAAGP 549
Query: 305 AGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPAL 484
G + P + AA + R GG G G G G A A+ A PG GY P
Sbjct: 550 GGYGPGQQGPGAAAAAAAAGRGPGGYGPGQQGPGGPGAAAAAA-AGRGPG-GYGPGQQGP 607
Query: 485 AVSSPG 502
PG
Sbjct: 608 GQQGPG 613
Score = 58.5 bits (140), Expect = 2e-07
Identities = 57/182 (31%), Positives = 70/182 (38%), Gaps = 16/182 (8%)
Frame = +2
Query: 5 AAASARIARSP--------------AMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSP 142
AAASA R P A GY PG++G A AA + Y P
Sbjct: 343 AAASAAAGRGPGGYGPGQQGPGGPSAAAAGPGGYGPGQQGPSAAAAA--AAGSGPGGYGP 400
Query: 143 ARARTPGGTAFSPAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTP 322
+ + PGG + A GPGG+ P ++A AAG+A GR P G
Sbjct: 401 GQ-QGPGGPGAAAAAAGPGGYGPGQQGPG-----AAAAAAGQAAAA--AAGRGPGGYGPG 452
Query: 323 RMSPASPGYAAMSPRFGG-GLGGGPAGGAGAYAPASPAYMATSPGM-GYSPSTPALAVSS 496
+ P PG AA + GG G GG G G P + A A G GY P
Sbjct: 453 QQGPGGPGAAAAAAGPGGYGPGGYGPGQQGPGGPGAAAAAAAGRGPGGYGPGQQGPGQQG 512
Query: 497 PG 502
PG
Sbjct: 513 PG 514
Score = 58.5 bits (140), Expect = 2e-07
Identities = 58/189 (30%), Positives = 73/189 (38%), Gaps = 23/189 (12%)
Frame = +2
Query: 5 AAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTY--AYSPARARTPGGTAFS 178
AAA+A P GY PG++G G A AA Y P + + PGG +
Sbjct: 1529 AAAAAAAGSGPG------GYGPGQQGPGRSGAAAAAAAAGRGPGGYGPGQ-QGPGGPGAA 1581
Query: 179 PAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTP----------GRSPAGRFTPRM 328
A GPGG+ P + S+ G PG+ P GR P G +
Sbjct: 1582 AAAAGPGGYGPGQQGPGAAAAASAGRGPGGYGPGQQGPGGSGAAAAAAGRGPGGYGPGQQ 1641
Query: 329 SPASPGYAAMSPRFGGGLGGGPA----GGAGAYAPASPAYMATSPGMGYSPST------- 475
P PG AA + G G GP GG+GA A A+ PG GY P
Sbjct: 1642 GPGGPGAAAAAAAGTGPGGYGPGQQGPGGSGAAAAAA----GRGPG-GYGPGQQGPGGPG 1696
Query: 476 PALAVSSPG 502
A A + PG
Sbjct: 1697 AAAAAAGPG 1705
Score = 58.2 bits (139), Expect = 3e-07
Identities = 59/173 (34%), Positives = 74/173 (42%), Gaps = 19/173 (10%)
Frame = +2
Query: 8 AASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAY 187
AA+A R P GY PG++G PG A AA Y P + + PG A + A
Sbjct: 1673 AAAAAAGRGPG------GYGPGQQGPGGPGAA--AAAAGPGGYGPGQ-QGPGAAAAAAAG 1723
Query: 188 TGPGGFSPINATASFSPIMSSADAAGRAT----PGRMTP-----------GRSPAGRFTP 322
+GPGG+ P P ++A AAGR PG+ P GR P G
Sbjct: 1724 SGPGGYGP-GQQGPGGPGAAAA-AAGRGPGGYGPGQQGPGGPGAAAAAAAGRGPGGYGPG 1781
Query: 323 RMSPASPGYAAMSPRFGGGLGGGPAG-GAGAYAPASPAYMATS---PGMGYSP 469
+ P G AA + G G G GP G G G P + A A + PG GY P
Sbjct: 1782 QQGPGGSGAAAAASGRGPG-GSGPGGYGPGQQGPGAAAAAAAAGRGPG-GYGP 1832
Score = 57.0 bits (136), Expect = 7e-07
Identities = 55/176 (31%), Positives = 64/176 (36%), Gaps = 10/176 (5%)
Frame = +2
Query: 5 AAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTA---F 175
AAA+A R P GY PG++G PG A AA R PGG
Sbjct: 562 AAAAAAAGRGPG------GYGPGQQGPGGPGAAAAAAA----------GRGPGGYGPGQQ 605
Query: 176 SPAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAA 355
P GPGG A A P G PG P G + P + AA
Sbjct: 606 GPGQQGPGGSGAAAAAAGRGPGGYGPGQQGPGGPGAAAAAAGPGGYGPGQQGPGAAAAAA 665
Query: 356 MSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPST-------PALAVSSPG 502
+ R GG G G G G+ A A+ A PG GY P A A + PG
Sbjct: 666 AAGRGPGGYGPGQQGPGGSGAAAAAA--GRGPG-GYGPGQQGPGGPGAAAAAAGPG 718
Score = 56.6 bits (135), Expect = 9e-07
Identities = 61/200 (30%), Positives = 72/200 (36%), Gaps = 35/200 (17%)
Frame = +2
Query: 8 AASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTY----------AYSPARART 157
AA+A R P GY PG++G PG A AA Y A + A R
Sbjct: 617 AAAAAAGRGPG------GYGPGQQGPGGPGAAAAAAGPGGYGPGQQGPGAAAAAAAAGRG 670
Query: 158 PGGTAFSPAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPA 337
PGG + P GPGG A A P G PG P G + P
Sbjct: 671 PGG--YGPGQQGPGGSGAAAAAAGRGPGGYGPGQQGPGGPGAAAAAAGPGG-YGPGQQGT 727
Query: 338 SPGYAAMSPRFGGGLG------GGP-----AGGAGAYAP-------ASPAYMATSPGMGY 463
AA + GG G GGP A G G Y P A+ A + PG GY
Sbjct: 728 GAAAAAAAGSGAGGYGPGQQGPGGPGAAAAAAGPGGYGPGQQGPGAAAAAAAGSGPG-GY 786
Query: 464 SP-------STPALAVSSPG 502
P S+ A A + PG
Sbjct: 787 GPGQQGPGGSSAAAAAAGPG 806
Score = 56.6 bits (135), Expect = 9e-07
Identities = 53/187 (28%), Positives = 68/187 (36%), Gaps = 21/187 (11%)
Frame = +2
Query: 5 AAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTY--AYSPARARTPGGTAFS 178
AAA+A P GY PG++G G A AA Y P + + PGG +
Sbjct: 930 AAAAAAAGSGPG------GYGPGQQGPGRSGAAAAAAAAGRGPGGYGPGQ-QGPGGPGAA 982
Query: 179 PAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTP----------GRSPAGRFTPRM 328
A GPGG+ P + S+ G PG+ P GR P G +
Sbjct: 983 AAAAGPGGYGPGQQGPGAAAAASAGRGPGGYGPGQQGPGGSGAAAAAAGRGPGGYGPGQQ 1042
Query: 329 SPASPGYAAMSPRFGGGLGGGPA-GGAGAYAPASPAYMATSPGMG--------YSPSTPA 481
P PG AA + G G GP G G P A + G G P P
Sbjct: 1043 GPGGPGAAAAAAAGRGPGGYGPGQQGPGQQGPGGSGAAAAAAGRGPGGYGPGQQGPGGPG 1102
Query: 482 LAVSSPG 502
A ++ G
Sbjct: 1103 AAAAAAG 1109
Score = 56.6 bits (135), Expect = 9e-07
Identities = 52/168 (30%), Positives = 59/168 (35%), Gaps = 3/168 (1%)
Frame = +2
Query: 8 AASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTA---FS 178
AA+A R P GY PG++G PG A AA R PGG
Sbjct: 1130 AAAAAAGRGPG------GYGPGQQGPGGPGAAAAAAA----------GRGPGGYGPGQQG 1173
Query: 179 PAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAM 358
P GPGG A A P G PG P G + P + AA
Sbjct: 1174 PGQQGPGGSGAAAAAAGRGPGGYGPGQQGPGGPGAAAAAAGPGGYGPGQQGPGAAAAAAA 1233
Query: 359 SPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPG 502
+ R GG G G G G A A+ A PG GY P PG
Sbjct: 1234 AGRGPGGYGPGQQGPGGPGAAAAAA-AGRGPG-GYGPGQQGPGQQGPG 1279
Score = 56.6 bits (135), Expect = 9e-07
Identities = 57/180 (31%), Positives = 66/180 (36%), Gaps = 15/180 (8%)
Frame = +2
Query: 8 AASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTY--------AYSPARARTPG 163
AA+A R P GY PG++G PG A AA Y A + A R PG
Sbjct: 1867 AAAAAAGRGPG------GYGPGQQGPGGPGAAAAAAGPGGYGPGQQGPGAAAAAAGRGPG 1920
Query: 164 GTAFSPAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASP 343
G + P GPGG A A P G PG P G + P
Sbjct: 1921 G--YGPGQQGPGGSGAAAAAAGRGPGGYGPGQQGPGGPGAAAAAAGPGG-YGPGQQGTGA 1977
Query: 344 GYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSP-------STPALAVSSPG 502
AA + GG G G G G A A+ A PG GY P + A A S PG
Sbjct: 1978 AAAAAAGSGAGGYGPGQQGPGGPGAAAA----AAGPG-GYGPGQQGPGAAAAAAAGSGPG 2032
Score = 56.2 bits (134), Expect = 1e-06
Identities = 55/173 (31%), Positives = 65/173 (37%), Gaps = 7/173 (4%)
Frame = +2
Query: 5 AAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPA 184
AAA+A R P GY PG++G PG A AA R PGG + P
Sbjct: 1817 AAAAAAAGRGPG------GYGPGQQGPGGPGAAAAAAA----------GRGPGG--YGPG 1858
Query: 185 YTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSP 364
GPGG A A P G PG P G + P + AA +
Sbjct: 1859 QQGPGGSGAAAAAAGRGPGGYGPGQQGPGGPGAAAAAAGPGGYGPGQQGPGAA--AAAAG 1916
Query: 365 RFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPST-------PALAVSSPG 502
R GG G G G G+ A A+ A PG GY P A A + PG
Sbjct: 1917 RGPGGYGPGQQGPGGSGAAAAAA--GRGPG-GYGPGQQGPGGPGAAAAAAGPG 1966
Score = 53.9 bits (128), Expect = 6e-06
Identities = 56/169 (33%), Positives = 66/169 (39%), Gaps = 3/169 (1%)
Frame = +2
Query: 5 AAASARIARSPAMPESERGYTPGREG--QRTPGRAFDAAMTPTYAYSPARARTPGGTAFS 178
AAA+A R P GY PG++G Q+ PG + AA A R PGG +
Sbjct: 1049 AAAAAAAGRGPG------GYGPGQQGPGQQGPGGSGAAAA--------AAGRGPGG--YG 1092
Query: 179 PAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAM 358
P GPGG AA A PG PG+ G + P PG AA
Sbjct: 1093 PGQQGPGG---------------PGAAAAAAGPGGYGPGQQRPG----QQGPGGPGAAAA 1133
Query: 359 SPRFG-GGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPG 502
+ G GG G G G G A A+ A PG GY P PG
Sbjct: 1134 AAGRGPGGYGPGQQGPGGPGAAAAAA-AGRGPG-GYGPGQQGPGQQGPG 1180
Score = 53.9 bits (128), Expect = 6e-06
Identities = 53/156 (33%), Positives = 68/156 (43%), Gaps = 8/156 (5%)
Frame = +2
Query: 59 GYTPGREGQRTPGRAFDAAM-TPTYAYSPARARTPGGTAFSPAYTGPGGFSPINATASFS 235
GY PG++G PG A AA + Y P + + PGG++ + A GPG + P
Sbjct: 1336 GYGPGQQG---PGAAAAAAAGSGPGGYGPGQ-QGPGGSSAAAAAAGPGRYGP----GQQG 1387
Query: 236 PIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGG------GPA 397
P ++A AAG + PG PG + P PG AA + G G GG GP
Sbjct: 1388 PGAAAAAAAG-SGPGGYGPG---------QQGPGGPGAAAAAAAAGRGPGGYGPGQQGPG 1437
Query: 398 GGAGAYAPASPAYMATSPG-MGYSPSTPALAVSSPG 502
G A A A P PG G + A A S PG
Sbjct: 1438 GPGAAAAAAGPG--GYGPGQQGPGAAAAAAAGSGPG 1471
[107][TOP]
>UniRef100_Q5KGG3 DNA-directed RNA polymerase n=1 Tax=Filobasidiella neoformans
RepID=Q5KGG3_CRYNE
Length = 1786
Score = 64.7 bits (156), Expect = 3e-09
Identities = 53/159 (33%), Positives = 67/159 (42%), Gaps = 33/159 (20%)
Frame = +2
Query: 128 YAYSPARA-RTPGGTAFSPAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTP--GR 298
Y SP +P G +SP+ P G+SP + A SP S A G +P GR
Sbjct: 1533 YGQSPMHGGMSPAG--YSPS--SPAGYSPTSPFAVTSPAYSPTSPFAGAAAGAASPWVGR 1588
Query: 299 SPAGRFTPRMSPASPGYAAMSPRFGG-----------------GLGGGPAGG-AGAYAPA 424
G +P SP SP Y+ SP+F GG AG A Y+P
Sbjct: 1589 GGYGATSPAYSPTSPQYSPTSPQFSPTSPSFSPSSPTYSPASPAYGGAGAGNRASPYSPT 1648
Query: 425 SPAYMATSPGMG------------YSPSTPALAVSSPGY 505
SPAY TSP G YSP++PA + +SP Y
Sbjct: 1649 SPAYSPTSPMGGITSPQYSPTSPRYSPTSPAFSPTSPSY 1687
Score = 61.2 bits (147), Expect = 4e-08
Identities = 54/168 (32%), Positives = 74/168 (44%), Gaps = 8/168 (4%)
Frame = +2
Query: 26 ARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGF 205
A SPA + Y+P Q +P + +PTY SPA SPAY G G
Sbjct: 1593 ATSPAYSPTSPQYSP-TSPQFSPTSPSFSPSSPTY--SPA----------SPAYGGAGAG 1639
Query: 206 SPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYA--------AMS 361
+ + + SP S G T + +P +P SP SP Y+ A S
Sbjct: 1640 NRASPYSPTSPAYSPTSPMGGITSPQYSPTSPRYSPTSPAFSPTSPSYSPTSPAPFQATS 1699
Query: 362 PRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
PR+ + + Y+PASPAY TSP YSP++PA + +SP Y
Sbjct: 1700 PRYSP-TSPQFSPTSPTYSPASPAYSPTSPQ--YSPTSPAYSPTSPAY 1744
Score = 56.6 bits (135), Expect = 9e-07
Identities = 55/164 (33%), Positives = 74/164 (45%), Gaps = 8/164 (4%)
Frame = +2
Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAA-MTPTY-AYSPARARTPGGTAFSPAY--TGPG 199
SP+ S Y+P G A+ +PT AYSP +P G SP Y T P
Sbjct: 1616 SPSFSPSSPTYSPASPAYGGAGAGNRASPYSPTSPAYSPT---SPMGGITSPQYSPTSPR 1672
Query: 200 GFSPINATASFSPIMSS----ADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPR 367
+SP + +FSP S + A +AT R +P +P SPASP Y+ SP+
Sbjct: 1673 -YSP--TSPAFSPTSPSYSPTSPAPFQATSPRYSPTSPQFSPTSPTYSPASPAYSPTSPQ 1729
Query: 368 FGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSP 499
Y+P SPAY TSP YSP++PA ++P
Sbjct: 1730 ---------------YSPTSPAYSPTSP--AYSPTSPAYGGAAP 1756
Score = 55.5 bits (132), Expect = 2e-06
Identities = 49/139 (35%), Positives = 59/139 (42%), Gaps = 18/139 (12%)
Frame = +2
Query: 143 ARARTPGGTAFSPAYTGP--GGFSPINATASFSPIMSSADAAG----------RATPGRM 286
A TPGG P GG A+FSPI SSA+ G G M
Sbjct: 1483 AGGMTPGGAMTPYDNLSPMWGGDKGALGHAAFSPIQSSANDEGGNFAYMGYGQSPMHGGM 1542
Query: 287 TPG----RSPAGRF-TPRMSPASPGYAAMSPRFGGGLG-GGPAGGAGAYAPASPAYMATS 448
+P SPAG T + SP Y+ SP G G P G G Y SPAY TS
Sbjct: 1543 SPAGYSPSSPAGYSPTSPFAVTSPAYSPTSPFAGAAAGAASPWVGRGGYGATSPAYSPTS 1602
Query: 449 PGMGYSPSTPALAVSSPGY 505
P YSP++P + +SP +
Sbjct: 1603 P--QYSPTSPQFSPTSPSF 1619
[108][TOP]
>UniRef100_C6HNU4 DNA-directed RNA polymerase II n=1 Tax=Ajellomyces capsulatus H143
RepID=C6HNU4_AJECH
Length = 668
Score = 64.7 bits (156), Expect = 3e-09
Identities = 53/170 (31%), Positives = 79/170 (46%), Gaps = 21/170 (12%)
Frame = +2
Query: 59 GYTPGREGQRTPGRAFDAAM-----------TPTYAYSPARARTPGGTAFSPAYTGPGGF 205
G++P G R+PG + + +P+ YSP +PG + SP + GF
Sbjct: 473 GFSP--HGARSPGGGYSPSSPFNTSPTSPRYSPSSGYSPT---SPGMSITSPRFMSSPGF 527
Query: 206 SPIN-ATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGL 382
SP + A A SP S + + +P +P SP +P SP SP Y+ SP F
Sbjct: 528 SPASPAFAPTSPAYSPTSPSYQQSP--TSPSYSPT---SPGFSPTSPSYSPTSPSFS--- 579
Query: 383 GGGPAGGAGAYAPASPAYMATSPGMGY---------SPSTPALAVSSPGY 505
PA + A++P SP+Y TSP +G SP++P +SPG+
Sbjct: 580 ---PA--SPAFSPTSPSYSPTSPALGVSTGRHLSPTSPTSPKYTPTSPGW 624
Score = 64.3 bits (155), Expect = 4e-09
Identities = 50/150 (33%), Positives = 70/150 (46%), Gaps = 13/150 (8%)
Frame = +2
Query: 95 GRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGFSPINATASFSPIMSSADAAGRAT 274
G D A TP + SP + GT + P + A F+ S + G +
Sbjct: 417 GLLSDGAATPYDSSSPLQDNMYIGTPDPDSNFSPIRQAGSETPAGFTEYQPSGFSGGFSP 476
Query: 275 PGRMTPGR--SPAGRF-----TPRMSPAS------PGYAAMSPRFGGGLGGGPAGGAGAY 415
G +PG SP+ F +PR SP+S PG + SPRF G PA + A+
Sbjct: 477 HGARSPGGGYSPSSPFNTSPTSPRYSPSSGYSPTSPGMSITSPRFMSSPGFSPA--SPAF 534
Query: 416 APASPAYMATSPGMGYSPSTPALAVSSPGY 505
AP SPAY TSP SP++P+ + +SPG+
Sbjct: 535 APTSPAYSPTSPSYQQSPTSPSYSPTSPGF 564
Score = 61.6 bits (148), Expect = 3e-08
Identities = 54/178 (30%), Positives = 79/178 (44%), Gaps = 10/178 (5%)
Frame = +2
Query: 2 DAAASARIARSPAM-------PESERGYTPGRE-GQRTPGRAFDAAMTPTYA--YSPARA 151
D AA+ + SP P+ + ++P R+ G TP F ++ +SP A
Sbjct: 421 DGAATPYDSSSPLQDNMYIGTPDPDSNFSPIRQAGSETPA-GFTEYQPSGFSGGFSPHGA 479
Query: 152 RTPGGTAFSPAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMS 331
R+PGG +SP+ SP N T+ SP S + +PG SP +P S
Sbjct: 480 RSPGG-GYSPS-------SPFN-TSPTSPRYSPSSGYSPTSPGMSIT--SPRFMSSPGFS 528
Query: 332 PASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
PASP +A SP AY+P SP+Y + YSP++P + +SP Y
Sbjct: 529 PASPAFAPTSP---------------AYSPTSPSYQQSPTSPSYSPTSPGFSPTSPSY 571
[109][TOP]
>UniRef100_C0NEY2 DNA-directed RNA polymerase n=1 Tax=Ajellomyces capsulatus G186AR
RepID=C0NEY2_AJECG
Length = 1234
Score = 64.7 bits (156), Expect = 3e-09
Identities = 53/170 (31%), Positives = 79/170 (46%), Gaps = 21/170 (12%)
Frame = +2
Query: 59 GYTPGREGQRTPGRAFDAAM-----------TPTYAYSPARARTPGGTAFSPAYTGPGGF 205
G++P G R+PG + + +P+ YSP +PG + SP + GF
Sbjct: 1039 GFSP--HGARSPGGGYSPSSPFNTSPTSPRYSPSSGYSPT---SPGMSITSPRFMSSPGF 1093
Query: 206 SPIN-ATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGL 382
SP + A A SP S + + +P +P SP +P SP SP Y+ SP F
Sbjct: 1094 SPASPAFAPTSPAYSPTSPSYQQSP--TSPSYSPT---SPGFSPTSPSYSPTSPSFS--- 1145
Query: 383 GGGPAGGAGAYAPASPAYMATSPGMGY---------SPSTPALAVSSPGY 505
PA + A++P SP+Y TSP +G SP++P +SPG+
Sbjct: 1146 ---PA--SPAFSPTSPSYSPTSPALGVSTGRHLSPTSPTSPKYTPTSPGW 1190
Score = 64.3 bits (155), Expect = 4e-09
Identities = 50/150 (33%), Positives = 70/150 (46%), Gaps = 13/150 (8%)
Frame = +2
Query: 95 GRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGFSPINATASFSPIMSSADAAGRAT 274
G D A TP + SP + GT + P + A F+ S + G +
Sbjct: 983 GLLSDGAATPYDSSSPLQDNMYIGTPDPDSNFSPIRQAGSETPAGFTEYQPSGFSGGFSP 1042
Query: 275 PGRMTPGR--SPAGRF-----TPRMSPAS------PGYAAMSPRFGGGLGGGPAGGAGAY 415
G +PG SP+ F +PR SP+S PG + SPRF G PA + A+
Sbjct: 1043 HGARSPGGGYSPSSPFNTSPTSPRYSPSSGYSPTSPGMSITSPRFMSSPGFSPA--SPAF 1100
Query: 416 APASPAYMATSPGMGYSPSTPALAVSSPGY 505
AP SPAY TSP SP++P+ + +SPG+
Sbjct: 1101 APTSPAYSPTSPSYQQSPTSPSYSPTSPGF 1130
Score = 61.6 bits (148), Expect = 3e-08
Identities = 54/178 (30%), Positives = 79/178 (44%), Gaps = 10/178 (5%)
Frame = +2
Query: 2 DAAASARIARSPAM-------PESERGYTPGRE-GQRTPGRAFDAAMTPTYA--YSPARA 151
D AA+ + SP P+ + ++P R+ G TP F ++ +SP A
Sbjct: 987 DGAATPYDSSSPLQDNMYIGTPDPDSNFSPIRQAGSETPA-GFTEYQPSGFSGGFSPHGA 1045
Query: 152 RTPGGTAFSPAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMS 331
R+PGG +SP+ SP N T+ SP S + +PG SP +P S
Sbjct: 1046 RSPGG-GYSPS-------SPFN-TSPTSPRYSPSSGYSPTSPGMSIT--SPRFMSSPGFS 1094
Query: 332 PASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
PASP +A SP AY+P SP+Y + YSP++P + +SP Y
Sbjct: 1095 PASPAFAPTSP---------------AYSPTSPSYQQSPTSPSYSPTSPGFSPTSPSY 1137
[110][TOP]
>UniRef100_A6SI63 DNA-directed RNA polymerase n=1 Tax=Botryotinia fuckeliana B05.10
RepID=A6SI63_BOTFB
Length = 1742
Score = 64.7 bits (156), Expect = 3e-09
Identities = 42/121 (34%), Positives = 60/121 (49%)
Frame = +2
Query: 143 ARARTPGGTAFSPAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTP 322
A +R+PGG +SP SP NA+ S SP S + T M G SP +P
Sbjct: 1552 AGSRSPGG-GYSPT-------SPFNASPS-SPNFSPSSPGYSPTSPMMGGGASPGYAVSP 1602
Query: 323 RMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPG 502
R SP SP + SP + + + +Y+P SP Y TSP + SP++P+ + +SP
Sbjct: 1603 RFSPVSPAFTPTSPAYSPTSPSFVSPTSPSYSPTSPNYSPTSPNIHGSPTSPSYSPTSPS 1662
Query: 503 Y 505
Y
Sbjct: 1663 Y 1663
Score = 59.7 bits (143), Expect = 1e-07
Identities = 54/172 (31%), Positives = 75/172 (43%), Gaps = 14/172 (8%)
Frame = +2
Query: 32 SPAMPESERGYTPGRE---GQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGG 202
SP S GY+P G +PG A +P SPA TP A+SP T P
Sbjct: 1573 SPNFSPSSPGYSPTSPMMGGGASPGYAVSPRFSPV---SPAF--TPTSPAYSP--TSPSF 1625
Query: 203 FSPINATASFSPIMSSADAAGRATPGRMT-PGRSPAGRFTPRMSPASPGYAAMSPRFGGG 379
SP + S+SP + G T P SP +P SP SP Y+ SP + G
Sbjct: 1626 VSP--TSPSYSPTSPNYSPTSPNIHGSPTSPSYSPT---SPSYSPTSPNYSPTSPNYAGN 1680
Query: 380 L---GGGPAGGAGAYAPASPAYMATSP-------GMGYSPSTPALAVSSPGY 505
G G + + Y+P SP + +SP YSP++P+ + +SP +
Sbjct: 1681 KVSPGSGLSPTSPVYSPTSPNWSPSSPQHQGNSTSPKYSPTSPSYSPTSPNF 1732
Score = 57.0 bits (136), Expect = 7e-07
Identities = 49/152 (32%), Positives = 71/152 (46%), Gaps = 21/152 (13%)
Frame = +2
Query: 113 AMTPTYAYSPARARTPGGTAFSPAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTP 292
A TP SP GG +P Y FSPI + S +P + + +G G M+P
Sbjct: 1498 AATPYDGQSPLNE---GGYLGTPDYGAQ--FSPIQSAGSDTPSGFATEYSGL---GGMSP 1549
Query: 293 ----GRSPAGRFTP----RMSPASPGYAAMSPRFGGG---LGGGPAGG----------AG 409
RSP G ++P SP+SP ++ SP + +GGG + G +
Sbjct: 1550 YAAGSRSPGGGYSPTSPFNASPSSPNFSPSSPGYSPTSPMMGGGASPGYAVSPRFSPVSP 1609
Query: 410 AYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
A+ P SPAY TSP SP++P+ + +SP Y
Sbjct: 1610 AFTPTSPAYSPTSPSF-VSPTSPSYSPTSPNY 1640
[111][TOP]
>UniRef100_A6QYA7 DNA-directed RNA polymerase n=1 Tax=Ajellomyces capsulatus NAm1
RepID=A6QYA7_AJECN
Length = 1747
Score = 64.7 bits (156), Expect = 3e-09
Identities = 53/170 (31%), Positives = 79/170 (46%), Gaps = 21/170 (12%)
Frame = +2
Query: 59 GYTPGREGQRTPGRAFDAAM-----------TPTYAYSPARARTPGGTAFSPAYTGPGGF 205
G++P G R+PG + + +P+ YSP +PG + SP + GF
Sbjct: 1552 GFSP--HGARSPGGGYSPSSPFNTSPTSPRYSPSSGYSPT---SPGMSITSPRFMSSPGF 1606
Query: 206 SPIN-ATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGL 382
SP + A A SP S + + +P +P SP +P SP SP Y+ SP F
Sbjct: 1607 SPASPAFAPTSPAYSPTSPSYQQSP--TSPSYSPT---SPGFSPTSPSYSPTSPSFS--- 1658
Query: 383 GGGPAGGAGAYAPASPAYMATSPGMGY---------SPSTPALAVSSPGY 505
PA + A++P SP+Y TSP +G SP++P +SPG+
Sbjct: 1659 ---PA--SPAFSPTSPSYSPTSPALGVSTGRHLSPTSPTSPKYTPTSPGW 1703
Score = 64.3 bits (155), Expect = 4e-09
Identities = 50/150 (33%), Positives = 70/150 (46%), Gaps = 13/150 (8%)
Frame = +2
Query: 95 GRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGFSPINATASFSPIMSSADAAGRAT 274
G D A TP + SP + GT + P + A F+ S + G +
Sbjct: 1496 GLLSDGAATPYDSSSPLQDNMYIGTPDPDSNFSPIRQAGSETPAGFTEYQPSGFSGGFSP 1555
Query: 275 PGRMTPGR--SPAGRF-----TPRMSPAS------PGYAAMSPRFGGGLGGGPAGGAGAY 415
G +PG SP+ F +PR SP+S PG + SPRF G PA + A+
Sbjct: 1556 HGARSPGGGYSPSSPFNTSPTSPRYSPSSGYSPTSPGMSITSPRFMSSPGFSPA--SPAF 1613
Query: 416 APASPAYMATSPGMGYSPSTPALAVSSPGY 505
AP SPAY TSP SP++P+ + +SPG+
Sbjct: 1614 APTSPAYSPTSPSYQQSPTSPSYSPTSPGF 1643
Score = 61.6 bits (148), Expect = 3e-08
Identities = 54/178 (30%), Positives = 79/178 (44%), Gaps = 10/178 (5%)
Frame = +2
Query: 2 DAAASARIARSPAM-------PESERGYTPGRE-GQRTPGRAFDAAMTPTYA--YSPARA 151
D AA+ + SP P+ + ++P R+ G TP F ++ +SP A
Sbjct: 1500 DGAATPYDSSSPLQDNMYIGTPDPDSNFSPIRQAGSETPA-GFTEYQPSGFSGGFSPHGA 1558
Query: 152 RTPGGTAFSPAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMS 331
R+PGG +SP+ SP N T+ SP S + +PG SP +P S
Sbjct: 1559 RSPGG-GYSPS-------SPFN-TSPTSPRYSPSSGYSPTSPGMSIT--SPRFMSSPGFS 1607
Query: 332 PASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
PASP +A SP AY+P SP+Y + YSP++P + +SP Y
Sbjct: 1608 PASPAFAPTSP---------------AYSPTSPSYQQSPTSPSYSPTSPGFSPTSPSY 1650
[112][TOP]
>UniRef100_UPI00016DFC5B UPI00016DFC5B related cluster n=1 Tax=Takifugu rubripes
RepID=UPI00016DFC5B
Length = 609
Score = 64.3 bits (155), Expect = 4e-09
Identities = 65/170 (38%), Positives = 74/170 (43%), Gaps = 11/170 (6%)
Frame = +2
Query: 26 ARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGF 205
ARSP P G G +PG A +P +AR+PGG SP PGG
Sbjct: 10 ARSPGGPARSPG---GPARSPSPG---GLAQSPGGPSPGGQARSPGGLGRSPGGPSPGGP 63
Query: 206 SPINATASFSPIMSSADAAGRATPGRMTPG---RSPAGRFTPRMSPASPGYAAMSP---- 364
SP + S S GR+ PG +PG RSP G P SPG A SP
Sbjct: 64 SPGGPSWSPGGPAQSPGGLGRS-PGGPSPGGQARSPGG---PSPGGPSPGGPARSPGGPA 119
Query: 365 RFGGGLG---GGPAGGAGAYAPASPAYMATSPG-MGYSPSTPALAVSSPG 502
R GGLG GGPA G SP A SPG +G SP P+ SPG
Sbjct: 120 RSPGGLGRSPGGPAQSPGGLG-RSPGGPAQSPGGLGRSPGGPSPGGPSPG 168
Score = 54.3 bits (129), Expect = 4e-06
Identities = 57/175 (32%), Positives = 67/175 (38%), Gaps = 9/175 (5%)
Frame = +2
Query: 5 AAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPA 184
A + + RSP P S G +PG G A +P +PGG A SP
Sbjct: 45 ARSPGGLGRSPGGP-SPGGPSPGGPSWSPGG----PAQSPGGLGRSPGGPSPGGQARSPG 99
Query: 185 YTGPGGFSPINATASFSPIMSSADAAGRATPG-RMTPG---RSPAGRFTPRMSPA----S 340
PGG SP S S GR+ G +PG RSP G P SP S
Sbjct: 100 GPSPGGPSPGGPARSPGGPARSPGGLGRSPGGPAQSPGGLGRSPGG---PAQSPGGLGRS 156
Query: 341 PGYAAMS-PRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPG 502
PG + P GG GGPA G +P PA P G +P SPG
Sbjct: 157 PGGPSPGGPSPGGPSSGGPARSPGGPSPGGPARSPGGPSPGGPARSPGGPARSPG 211
[113][TOP]
>UniRef100_Q206M1 Major ampullate spidroin 2 (Fragment) n=1 Tax=Latrodectus hesperus
RepID=Q206M1_9ARAC
Length = 1198
Score = 64.3 bits (155), Expect = 4e-09
Identities = 58/170 (34%), Positives = 70/170 (41%), Gaps = 4/170 (2%)
Frame = +2
Query: 8 AASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAY 187
AA+A A P ++GY PG G A A AY P + G A + A
Sbjct: 472 AAAAAAAGGPGYG-GQQGYGPGGAGAAAAAAAGGAGPGRQQAYGPGGS---GAAAAAAAG 527
Query: 188 TGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPR 367
+GP G+ P A A AA A G PGR A + P S A+ AA P
Sbjct: 528 SGPSGYGPGAAGPG------GAGAAAAAAAGGAGPGRQQA--YGPGGSGAAAAAAAGGPG 579
Query: 368 FGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSP----STPALAVSSPGY 505
+GG G GP GGAGA A A+ GY P + A A PGY
Sbjct: 580 YGGQQGYGP-GGAGAAAAAAAGGAGPGRQQGYGPGSSGAAAAAAAGGPGY 628
Score = 63.5 bits (153), Expect = 7e-09
Identities = 57/164 (34%), Positives = 66/164 (40%)
Frame = +2
Query: 5 AAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPA 184
AAA+A A P GY PG G PG A AA A + A PGG P+
Sbjct: 118 AAAAAAAAAGPG----PSGYGPGTAGPSGPGGAGAAA-----AAAAAGGSGPGGYGQGPS 168
Query: 185 YTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSP 364
GP G F P S A AA A G PGR + P S A+ AA P
Sbjct: 169 GYGPSGSG---GQQGFGPGGSGAAAAAAAAAGGAGPGRQQG--YGPGSSGAAAAAAAGGP 223
Query: 365 RFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSS 496
+GG G GP GGAGA A A+ Y P A ++
Sbjct: 224 GYGGQQGYGP-GGAGAAAAAAAGGAGPGTQQAYGPGGSGAAAAA 266
Score = 61.6 bits (148), Expect = 3e-08
Identities = 62/167 (37%), Positives = 68/167 (40%), Gaps = 1/167 (0%)
Frame = +2
Query: 5 AAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPA 184
AAA+A A P GY PG G PG A AA A + A PGG P+
Sbjct: 262 AAAAAATAAGPG----PSGYGPGAAGPSGPGGAGAAA-----AAAAAGGSGPGGYGQGPS 312
Query: 185 YTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSP 364
GP G + P S A AA A G PGR S G AA P
Sbjct: 313 GYGPSG---PGGQQGYGPGGSGAAAAAAAAAGGAGPGRQQG------YGQGSSGAAAGGP 363
Query: 365 RFGGGLGGGPAGGAGAYAPASPAYMATSPG-MGYSPSTPALAVSSPG 502
+GG G GP GGAGA A+ A A PG GY P A S PG
Sbjct: 364 GYGGQQGYGP-GGAGA---AAAAAAAAGPGPSGYGPG--AAGSSGPG 404
Score = 61.2 bits (147), Expect = 4e-08
Identities = 59/160 (36%), Positives = 69/160 (43%), Gaps = 1/160 (0%)
Frame = +2
Query: 26 ARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGF 205
AR A P ++GY PG G A AA Y + PGG A + A GG
Sbjct: 1 ARGGAGPGRQQGYGPGSSG------AAAAAAAGGPGYGGQQGYGPGG-AGAAAVAAAGGA 53
Query: 206 SPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLG 385
P ++ P S A AA A G PGR + P S A+ AA P +GG G
Sbjct: 54 GP-GTQQAYGPGGSGAAAAAAAAAGGAGPGRQQG--YGPGSSGAAAAAAAGGPGYGGQQG 110
Query: 386 GGPAGGAGAYAPASPAYMATSPG-MGYSPSTPALAVSSPG 502
GP GGAGA A+ A A PG GY P T S PG
Sbjct: 111 YGP-GGAGA---AAAAAAAAGPGPSGYGPGT--AGPSGPG 144
Score = 60.5 bits (145), Expect = 6e-08
Identities = 56/166 (33%), Positives = 66/166 (39%)
Frame = +2
Query: 5 AAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPA 184
AAA+A A P GY PG G PG A AA A + A PGG P+
Sbjct: 760 AAAAAATAAGPG----PSGYGPGAAGPSGPGGAGAAA-----AAAAAGGSGPGGYGQGPS 810
Query: 185 YTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSP 364
GP G + P S A AA A G PGR + S A+ AA P
Sbjct: 811 GYGPSG---PGGQQGYGPGGSGAAAAAAAAAGGAGPGRQQG--YGQGSSGAAAAAAAGGP 865
Query: 365 RFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPG 502
+GG G GP GGAGA A A+ Y P A ++ G
Sbjct: 866 GYGGQQGFGP-GGAGAAAAAAAGGAGPGRQQAYGPGGSGAAAAAAG 910
Score = 58.5 bits (140), Expect = 2e-07
Identities = 56/183 (30%), Positives = 72/183 (39%), Gaps = 19/183 (10%)
Frame = +2
Query: 5 AAASARIARSPAMPESERGYTPGREGQRT----------------PGRAFDAAMTPTYAY 136
A A+A A A P ++GY PG G PG A AA
Sbjct: 591 AGAAAAAAAGGAGPGRQQGYGPGSSGAAAAAAAGGPGYGDQQGYGPGGAGAAAAAAAAGP 650
Query: 137 SPARARTPGGT---AFSPAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPA 307
+A PGG+ A + A +GP G+ P A ++A AAG A PGR
Sbjct: 651 GRQQAYGPGGSGAAAAAAAGSGPSGYGP-GAAGPGGAAAAAAAAAGGAGPGRQQA----- 704
Query: 308 GRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALA 487
+ P S A+ AA P +GG G GP GGAGA A A+ Y P A
Sbjct: 705 --YGPGGSGAAAAAAAGGPGYGGQQGYGP-GGAGAAAAAAAGGAGPGTQQAYGPGGSGAA 761
Query: 488 VSS 496
++
Sbjct: 762 AAA 764
Score = 57.4 bits (137), Expect = 5e-07
Identities = 55/164 (33%), Positives = 65/164 (39%)
Frame = +2
Query: 5 AAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPA 184
AAA+A A P GY PG G PG A AA A + A PGG P+
Sbjct: 378 AAAAAAAAAGPG----PSGYGPGAAGSSGPGGAGAAA-----AAAAAGGSGPGGYGQGPS 428
Query: 185 YTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSP 364
GP G + P S A AA A G PGR + P A+ AA P
Sbjct: 429 VYGPSG---PGGQQGYGPGGSGAAAAAAAAAGGAGPGRQQG--YGP--GGAAAAAAAGGP 481
Query: 365 RFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSS 496
+GG G GP GGAGA A A+ Y P A ++
Sbjct: 482 GYGGQQGYGP-GGAGAAAAAAAGGAGPGRQQAYGPGGSGAAAAA 524
[114][TOP]
>UniRef100_UPI00005A0B1F PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide
A isoform 10 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B1F
Length = 1840
Score = 63.9 bits (154), Expect = 6e-09
Identities = 45/150 (30%), Positives = 68/150 (45%), Gaps = 1/150 (0%)
Frame = +2
Query: 59 GYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGFSPINATAS-FS 235
GY+P TPG + Y SP +P A+ P PGG++P + + S S
Sbjct: 1497 GYSPA--WSPTPGSPGSPGPSSPYIPSPGELYSPTSPAYEPR--SPGGYTPQSPSYSPTS 1552
Query: 236 PIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAY 415
P S + T +P +P SP SP Y+ SP + + + +Y
Sbjct: 1553 PSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSY--------SPTSPSY 1604
Query: 416 APASPAYMATSPGMGYSPSTPALAVSSPGY 505
+P SP+Y TSP YSP++P+ + +SP Y
Sbjct: 1605 SPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1632
Score = 54.3 bits (129), Expect = 4e-06
Identities = 47/166 (28%), Positives = 75/166 (45%), Gaps = 8/166 (4%)
Frame = +2
Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY--T 190
SP+ + Y+P ++ +P+Y+ YSP +P + SP+Y T
Sbjct: 1594 SPSYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPSYSPT---SPSYSPTSPSYSPT 1649
Query: 191 GPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPR 367
P +SP + + S SP S + T +P R +P SP SP Y+ SP+
Sbjct: 1650 SPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPSRPNYTPTSPSYSPTSPSYSPTSPK 1708
Query: 368 FGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
+ + +Y+P+SP Y TSP YSP++P + +SP Y
Sbjct: 1709 Y--------TPTSPSYSPSSPEYTPTSP--KYSPTSPKYSPTSPKY 1744
[115][TOP]
>UniRef100_UPI00016DFC5C UPI00016DFC5C related cluster n=1 Tax=Takifugu rubripes
RepID=UPI00016DFC5C
Length = 579
Score = 63.9 bits (154), Expect = 6e-09
Identities = 64/170 (37%), Positives = 73/170 (42%), Gaps = 11/170 (6%)
Frame = +2
Query: 26 ARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGF 205
ARSP P +PG G +PG +AR+PGG SP PGG
Sbjct: 10 ARSPGGPAR----SPGSPGGPSPG---------------GQARSPGGLGRSPGGPSPGGP 50
Query: 206 SPINATASFSPIMSSADAAGRATPGRMTPG---RSPAGRFTPRMSPASPGYAAMSP---- 364
SP + S S GR+ PG +PG RSP G P SPG A SP
Sbjct: 51 SPGGPSWSPGGPAQSPGGLGRS-PGGPSPGGQARSPGG---PSPGGPSPGGPARSPGGPA 106
Query: 365 RFGGGLG---GGPAGGAGAYAPASPAYMATSPG-MGYSPSTPALAVSSPG 502
R GGLG GGPA G SP A SPG +G SP P+ SPG
Sbjct: 107 RSPGGLGRSPGGPAQSPGGLG-RSPGGPAQSPGGLGRSPGGPSPGGPSPG 155
Score = 54.3 bits (129), Expect = 4e-06
Identities = 57/175 (32%), Positives = 67/175 (38%), Gaps = 9/175 (5%)
Frame = +2
Query: 5 AAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPA 184
A + + RSP P S G +PG G A +P +PGG A SP
Sbjct: 32 ARSPGGLGRSPGGP-SPGGPSPGGPSWSPGG----PAQSPGGLGRSPGGPSPGGQARSPG 86
Query: 185 YTGPGGFSPINATASFSPIMSSADAAGRATPG-RMTPG---RSPAGRFTPRMSPA----S 340
PGG SP S S GR+ G +PG RSP G P SP S
Sbjct: 87 GPSPGGPSPGGPARSPGGPARSPGGLGRSPGGPAQSPGGLGRSPGG---PAQSPGGLGRS 143
Query: 341 PGYAAMS-PRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPG 502
PG + P GG GGPA G +P PA P G +P SPG
Sbjct: 144 PGGPSPGGPSPGGPSSGGPARSPGGPSPGGPARSPGGPSPGGPARSPGGPARSPG 198
[116][TOP]
>UniRef100_Q8MX30 DNA-directed RNA polymerase (Fragment) n=1 Tax=Naegleria gruberi
RepID=Q8MX30_NAEGR
Length = 1590
Score = 63.9 bits (154), Expect = 6e-09
Identities = 43/117 (36%), Positives = 55/117 (47%), Gaps = 6/117 (5%)
Frame = +2
Query: 149 ARTPGGTAFSPAYTGPGGFSPINATASFSPIMSSADAAGR------ATPGRMTPGRSPAG 310
A TP G SP Y G GFSP ++FSP+ SS + G ++PG +P
Sbjct: 1491 AMTPLGRTPSPEYQG--GFSPSPYNSAFSPVASSPTSPGHQGGYSPSSPGNYSPTSPAYS 1548
Query: 311 RFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPA 481
+P SP SP Y+ SP Y+P SPAY TSP YSP++PA
Sbjct: 1549 PSSPNYSPTSPAYSPTSPN---------------YSPTSPAYSPTSP--NYSPTSPA 1588
Score = 53.9 bits (128), Expect = 6e-06
Identities = 34/83 (40%), Positives = 44/83 (53%), Gaps = 5/83 (6%)
Frame = +2
Query: 272 TPGRMTP-GRSPAGRFTPRMSPASPGYA----AMSPRFGGGLGGGPAGGAGAYAPASPAY 436
T G MTP GR+P+ + SP+ A A SP G GG G Y+P SPAY
Sbjct: 1488 TQGAMTPLGRTPSPEYQGGFSPSPYNSAFSPVASSPTSPGHQGGYSPSSPGNYSPTSPAY 1547
Query: 437 MATSPGMGYSPSTPALAVSSPGY 505
+SP YSP++PA + +SP Y
Sbjct: 1548 SPSSP--NYSPTSPAYSPTSPNY 1568
[117][TOP]
>UniRef100_B6H9U6 DNA-directed RNA polymerase n=1 Tax=Penicillium chrysogenum Wisconsin
54-1255 RepID=B6H9U6_PENCW
Length = 1733
Score = 63.9 bits (154), Expect = 6e-09
Identities = 52/189 (27%), Positives = 76/189 (40%), Gaps = 35/189 (18%)
Frame = +2
Query: 44 PESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGFSPINA- 220
P + Y G + T PT + +A T FSPA PGG+SP +
Sbjct: 1507 PMASSPYMAGGDPNSTFSPMHQIGQEPTGGLTEYQATTSTFGGFSPAARSPGGYSPTSPF 1566
Query: 221 -TASFSPIMSSADAAGRATPG---RMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGG 388
T+ SP S + + +PG +PG SPA +P P SP Y+ SP +G
Sbjct: 1567 NTSPTSPGYSPSSSYSPTSPGIGMMTSPGFSPA---SPTFQPTSPAYSPTSPAYGQASPT 1623
Query: 389 GPA-----------------------GGAGAYAPASPAYMATSPGMG-------YSPSTP 478
P+ + A++P SP+Y TSP +G SP++P
Sbjct: 1624 SPSYSPTSPGFSPTSPNYSPTSPSFSPASPAFSPTSPSYSPTSPAIGGARHLSPTSPTSP 1683
Query: 479 ALAVSSPGY 505
+SPG+
Sbjct: 1684 KYTPTSPGW 1692
[118][TOP]
>UniRef100_UPI0000E48673 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
(RPB1) isoform 1 n=1 Tax=Strongylocentrotus purpuratus
RepID=UPI0000E48673
Length = 1880
Score = 63.5 bits (153), Expect = 7e-09
Identities = 55/178 (30%), Positives = 83/178 (46%), Gaps = 11/178 (6%)
Frame = +2
Query: 5 AAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTY-AYSPARARTPG-GTAFS 178
A S + SP M +G TP +P + MTP +SPA + + G A+S
Sbjct: 1496 AMGSPSQSMSPQMTPWNQGATPMHGASWSP--MMGSGMTPGGPGFSPANSESTGFSPAYS 1553
Query: 179 PAYT----GPG----GFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMS 331
PA++ PG G+SP + + S SP S A + T +P +P S
Sbjct: 1554 PAWSPQPQSPGSPSPGYSPTSPSYSPTSPGYSPASPSYSPTSPSYSPTSPSYSPTSPSYS 1613
Query: 332 PASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
P SP Y+ SP + + + +Y+P SP+Y TSP YSP++P+ + +SP Y
Sbjct: 1614 PTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1661
Score = 58.5 bits (140), Expect = 2e-07
Identities = 48/166 (28%), Positives = 78/166 (46%), Gaps = 8/166 (4%)
Frame = +2
Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARAR-TPGGTAFSPAYTG 193
SP+ S Y+P ++ + +P+Y+ YSP+ + +P ++SP T
Sbjct: 1714 SPSYSPSSPKYSPTSPSYSPTSPSY-SPQSPSYSPGSPSYSPSSPKYSPTSPSYSP--TS 1770
Query: 194 PGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRF 370
P +SP + S SP S A + T + +P +P SP SP Y+ SP +
Sbjct: 1771 PS-YSPTSPNFSPSSPTYSPASPSYSPTSPKYSPSSPKYSPTSPTYSPTSPKYSPASPTY 1829
Query: 371 GGGLGGGPAGGAGAYAPASPAYMATSP-GMGYSPSTPALAVSSPGY 505
+ + Y+P+SP Y TSP G YSP++P+ + +SP Y
Sbjct: 1830 --------SPTSPKYSPSSPTYSPTSPKGSTYSPTSPSYSPTSPSY 1867
Score = 54.3 bits (129), Expect = 4e-06
Identities = 47/172 (27%), Positives = 74/172 (43%), Gaps = 14/172 (8%)
Frame = +2
Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY--T 190
SP+ + Y+P ++ +P+Y+ YSP +P + SP+Y T
Sbjct: 1630 SPSYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPSYSPT---SPSYSPTSPSYSPT 1685
Query: 191 GPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPR 367
P +SP + + S SP S + T +P +P SP SP Y+ SP
Sbjct: 1686 SPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPKYSPTSPSYSPTSPSYSPQSPS 1744
Query: 368 FGGGLGGGPAGG------AGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
+ G + +Y+P SP+Y TSP +SPS+P + +SP Y
Sbjct: 1745 YSPGSPSYSPSSPKYSPTSPSYSPTSPSYSPTSP--NFSPSSPTYSPASPSY 1794
Score = 53.9 bits (128), Expect = 6e-06
Identities = 42/149 (28%), Positives = 65/149 (43%), Gaps = 6/149 (4%)
Frame = +2
Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARAR-TPGGTAFSPAYTG 193
SP+ Y+PG +P + +P+Y+ YSP +P +SPA
Sbjct: 1735 SPSYSPQSPSYSPGSPSY-SPSSPKYSPTSPSYSPTSPSYSPTSPNFSPSSPTYSPASPS 1793
Query: 194 PGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFG 373
SP + +S P S T + +P +P+ SP+SP Y+ SP+
Sbjct: 1794 YSPTSPKYSPSS--PKYSPTSPTYSPTSPKYSPASPTYSPTSPKYSPSSPTYSPTSPK-- 1849
Query: 374 GGLGGGPAGGAGAYAPASPAYMATSPGMG 460
G + + +Y+P SP+Y TSPGMG
Sbjct: 1850 ---GSTYSPTSPSYSPTSPSYSPTSPGMG 1875
Score = 53.5 bits (127), Expect = 8e-06
Identities = 49/163 (30%), Positives = 76/163 (46%), Gaps = 6/163 (3%)
Frame = +2
Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAY--TGPGGF 205
SP+ + Y+P + +PG + +P Y SP +P + SP+Y T P F
Sbjct: 1728 SPSYSPTSPSYSP-QSPSYSPGSPSYSPSSPKY--SPT---SPSYSPTSPSYSPTSPN-F 1780
Query: 206 SPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGL 382
SP + T S SP S + + +P +P+ SPASP Y+ SP++
Sbjct: 1781 SPSSPTYSPASPSYSPTSPKYSPSSPKYSPTSPTYSPTSPKYSPASPTYSPTSPKY---- 1836
Query: 383 GGGPAGGAGAYAPASP---AYMATSPGMGYSPSTPALAVSSPG 502
+ + Y+P SP Y TSP YSP++P+ + +SPG
Sbjct: 1837 ----SPSSPTYSPTSPKGSTYSPTSPS--YSPTSPSYSPTSPG 1873
[119][TOP]
>UniRef100_Q7SDN0 DNA-directed RNA polymerase n=1 Tax=Neurospora crassa
RepID=Q7SDN0_NEUCR
Length = 1752
Score = 63.5 bits (153), Expect = 7e-09
Identities = 56/175 (32%), Positives = 82/175 (46%), Gaps = 28/175 (16%)
Frame = +2
Query: 65 TPGREGQRTPGRAFDAAMTPTYA-YSP---ARARTPGGTAFSPAYTGPGGF--------- 205
TP G F + +PT +SP A + +P F Y G GG+
Sbjct: 1506 TPYDTGSPMADSGFLGSYSPTMGNFSPIQGAGSDSPTNNGFGTDYGGVGGYGSGTSYSSA 1565
Query: 206 -SPINATASFSPIMSSADAAGRATPGRMTPGRSP-------AGRF--TPRMSPASPGYAA 355
SP AT+ F+P +S + G +P G SP AGRF +P+ SP+SP ++
Sbjct: 1566 TSP-RATSPFTP--TSPFSYGGYSPSSPAAGYSPSSPLLDSAGRFASSPQFSPSSPSFSP 1622
Query: 356 MSPRFGGGLGGGPAGG--AGAYAPASPA---YMATSPGMGYSPSTPALAVSSPGY 505
SP G P+ + +Y+PASPA Y TSP +SP++P+ + +SP Y
Sbjct: 1623 TSPMLRPGSPTSPSYSPTSPSYSPASPAAARYSPTSPAQQFSPTSPSYSPTSPSY 1677
Score = 59.7 bits (143), Expect = 1e-07
Identities = 48/140 (34%), Positives = 60/140 (42%), Gaps = 23/140 (16%)
Frame = +2
Query: 155 TPGGTAFSPAYTGP---------GGFSPINATASFSPIMSSADAAGRATPGRM----TPG 295
T +A SP T P GG+SP + A +SP D+AGR +P
Sbjct: 1560 TSYSSATSPRATSPFTPTSPFSYGGYSPSSPAAGYSPSSPLLDSAGRFASSPQFSPSSPS 1619
Query: 296 RSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA-YAPASPA---------YMAT 445
SP SP SP Y+ SP + PA A A Y+P SPA Y T
Sbjct: 1620 FSPTSPMLRPGSPTSPSYSPTSPSYS------PASPAAARYSPTSPAQQFSPTSPSYSPT 1673
Query: 446 SPGMGYSPSTPALAVSSPGY 505
SP YSP++PA +SP Y
Sbjct: 1674 SP--SYSPASPAFQATSPSY 1691
Score = 54.3 bits (129), Expect = 4e-06
Identities = 50/168 (29%), Positives = 75/168 (44%), Gaps = 11/168 (6%)
Frame = +2
Query: 32 SPAMPESERGYTPGREGQRTPGR-AFDAAMTPTY-AYSPARARTPGGTAFSPAYTGPGGF 205
SP+ P + GY+P + GR A +P+ ++SP G+ SP+Y
Sbjct: 1586 SPSSPAA--GYSPSSPLLDSAGRFASSPQFSPSSPSFSPTSPMLRPGSPTSPSY------ 1637
Query: 206 SPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFT-PRMSPASPGYAAMSPRFGGGL 382
SP + S+SP +A +P + SP+ T P SPASP + A SP +
Sbjct: 1638 SP--TSPSYSPASPAAARYSPTSPAQQFSPTSPSYSPTSPSYSPASPAFQATSPSYSPAS 1695
Query: 383 GGGPAGGAGAYAPASPAYMATSPGM--------GYSPSTPALAVSSPG 502
AY+P SP++ SPG GYSP++P + +PG
Sbjct: 1696 PTWSPTSPDAYSPTSPSFQR-SPGQQLSPTSPTGYSPTSPQYSPRTPG 1742
[120][TOP]
>UniRef100_A7EKT1 DNA-directed RNA polymerase n=2 Tax=Sclerotinia sclerotiorum
RepID=A7EKT1_SCLS1
Length = 1746
Score = 63.5 bits (153), Expect = 7e-09
Identities = 41/121 (33%), Positives = 60/121 (49%)
Frame = +2
Query: 143 ARARTPGGTAFSPAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTP 322
A +R+PGG +SP SP NA+ + SP S + T M G SP +P
Sbjct: 1556 AGSRSPGG-GYSPT-------SPFNASPT-SPQFSPSSPGYSPTSPMMGGGASPGYSVSP 1606
Query: 323 RMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPG 502
R SP SP + SP + + + +Y+P SP Y TSP + SP++P+ + +SP
Sbjct: 1607 RFSPVSPAFTPTSPAYSPTSPSFVSPTSPSYSPTSPNYSPTSPNIHGSPTSPSYSPTSPS 1666
Query: 503 Y 505
Y
Sbjct: 1667 Y 1667
Score = 58.9 bits (141), Expect = 2e-07
Identities = 53/172 (30%), Positives = 75/172 (43%), Gaps = 14/172 (8%)
Frame = +2
Query: 32 SPAMPESERGYTPGRE---GQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGG 202
SP S GY+P G +PG + +P SPA TP A+SP T P
Sbjct: 1577 SPQFSPSSPGYSPTSPMMGGGASPGYSVSPRFSPV---SPAF--TPTSPAYSP--TSPSF 1629
Query: 203 FSPINATASFSPIMSSADAAGRATPGRMT-PGRSPAGRFTPRMSPASPGYAAMSPRFGGG 379
SP + S+SP + G T P SP +P SP SP Y+ SP + G
Sbjct: 1630 VSP--TSPSYSPTSPNYSPTSPNIHGSPTSPSYSPT---SPSYSPTSPNYSPTSPNYAGN 1684
Query: 380 L---GGGPAGGAGAYAPASPAYMATSP-------GMGYSPSTPALAVSSPGY 505
G G + + Y+P SP + +SP YSP++P+ + +SP +
Sbjct: 1685 KVSPGSGLSPTSPVYSPTSPNWSPSSPQHQGNNTSPKYSPTSPSYSPTSPNF 1736
[121][TOP]
>UniRef100_B4NDK9 DNA-directed RNA polymerase n=1 Tax=Drosophila willistoni
RepID=B4NDK9_DROWI
Length = 1890
Score = 63.2 bits (152), Expect = 1e-08
Identities = 55/154 (35%), Positives = 74/154 (48%), Gaps = 5/154 (3%)
Frame = +2
Query: 59 GYTPGREGQRTPGRAFDAAMTPTYAYSP---ARARTPGGTAFSP-AYTGPGGFSPINATA 226
G TP TP + TP Y +SP A + TPGG +FSP A + G SP
Sbjct: 1497 GSTPSMTPPMTP---WVNCNTPRY-FSPQGHASSMTPGGPSFSPAAASDASGMSP----- 1547
Query: 227 SFSPIMSSADAAGRATPG-RMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGG 403
S+SP + + ++PG M+P + +P SP SP Y A SP GG +
Sbjct: 1548 SWSP---AHPGSSPSSPGPSMSPYFPTSPSVSPSYSPTSPNYTASSP--SGGASPNYSPS 1602
Query: 404 AGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
+ Y+P SP Y ATSP Y+ +TP + S GY
Sbjct: 1603 SPNYSPTSPLYAATSP--RYASTTPNFNLQSTGY 1634
Score = 56.2 bits (134), Expect = 1e-06
Identities = 44/140 (31%), Positives = 64/140 (45%), Gaps = 8/140 (5%)
Frame = +2
Query: 110 AAMTPTY-AYSPARARTPGGTA--FSPAYTGPGGFSPINATASFSPIMSSADAAGRATPG 280
++MTP ++SPA A G + +SPA+ G SP + + + P S + T
Sbjct: 1525 SSMTPGGPSFSPAAASDASGMSPSWSPAHPGSSPSSPGPSMSPYFPTSPSVSPSYSPTSP 1584
Query: 281 RMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGM- 457
T SP+G +P SP+SP Y+ SP YA SP Y +T+P
Sbjct: 1585 NYTAS-SPSGGASPNYSPSSPNYSPTSP---------------LYAATSPRYASTTPNFN 1628
Query: 458 ----GYSPSTPALAVSSPGY 505
GYSPS+ + +SP Y
Sbjct: 1629 LQSTGYSPSSSGYSPTSPVY 1648
Score = 54.7 bits (130), Expect = 3e-06
Identities = 50/185 (27%), Positives = 75/185 (40%), Gaps = 18/185 (9%)
Frame = +2
Query: 5 AAASARIARS-PAMPESERGYTPGREGQRTPGRAFDAAM----TPTYA------YSPARA 151
AA S R A + P GY+P G + +P++A YSP A
Sbjct: 1614 AATSPRYASTTPNFNLQSTGYSPSSSGYSPTSPVYSPTSNFQSSPSFAGSGSNMYSPGNA 1673
Query: 152 RTPGGTAFSPAYTGPGGFSPINATASFSPIMSSADAAGRATP--GRMTPGRSPAGRFTPR 325
+P + ++P +SP + S+SP S+ + +P +P SP +P
Sbjct: 1674 YSPSSSNYTP---NSPSYSP--TSPSYSP---SSPSYSPTSPCYSPTSPSYSPT---SPN 1722
Query: 326 MSPASPGYAAMSPRFGGGLGGGPAGGAGA-----YAPASPAYMATSPGMGYSPSTPALAV 490
+P +P Y+ SP + PA A + Y+P SP Y SP SP +P
Sbjct: 1723 YTPVTPSYSPTSPNYSASPHYSPASPAYSQTGVKYSPTSPTYSPPSPSYDGSPGSPQYTP 1782
Query: 491 SSPGY 505
SP Y
Sbjct: 1783 GSPQY 1787
[122][TOP]
>UniRef100_A7AWJ0 DNA-directed RNA polymerase n=1 Tax=Babesia bovis RepID=A7AWJ0_BABBO
Length = 1746
Score = 63.2 bits (152), Expect = 1e-08
Identities = 44/132 (33%), Positives = 60/132 (45%), Gaps = 2/132 (1%)
Frame = +2
Query: 116 MTPTY-AYSPAR-ARTPGGTAFSPAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMT 289
M+PT YSP G +SPA SP+ + S P+ S A T +
Sbjct: 1581 MSPTSPVYSPTSPVYGQAGGVYSPASPAYSPTSPLYSPTS--PVYSPTSPAYSPTSPAYS 1638
Query: 290 PGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSP 469
P +P SP SP Y+ SP + + + AY+P SPAY TSP +GY P
Sbjct: 1639 PTSPAYSPTSPAYSPTSPAYSPTSPAY--------SPTSPAYSPTSPAYSPTSPNLGYLP 1690
Query: 470 STPALAVSSPGY 505
++PA +SP Y
Sbjct: 1691 TSPAYRPTSPAY 1702
Score = 57.0 bits (136), Expect = 7e-07
Identities = 52/156 (33%), Positives = 69/156 (44%), Gaps = 14/156 (8%)
Frame = +2
Query: 80 GQRTPGRAFDAAMTPTYA-----YSPAR-ARTPGGTAFSPAY-----TGPGGFSPIN-AT 223
G +P + +P Y YSPA A +P +SP T P +SP + A
Sbjct: 1579 GMMSPTSPVYSPTSPVYGQAGGVYSPASPAYSPTSPLYSPTSPVYSPTSPA-YSPTSPAY 1637
Query: 224 ASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPA-- 397
+ SP S A T +P +P SP SP Y+ SP G L PA
Sbjct: 1638 SPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPNLGY-LPTSPAYR 1696
Query: 398 GGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
+ AY+P SPAY TSP YSP++P + +SP Y
Sbjct: 1697 PTSPAYSPTSPAYSPTSP--AYSPTSPVYSPTSPEY 1730
[123][TOP]
>UniRef100_C5FCL2 DNA-directed RNA polymerase n=1 Tax=Microsporum canis CBS 113480
RepID=C5FCL2_NANOT
Length = 1748
Score = 63.2 bits (152), Expect = 1e-08
Identities = 53/178 (29%), Positives = 81/178 (45%), Gaps = 10/178 (5%)
Frame = +2
Query: 2 DAAASARIARSP-------AMPESERGYTPGREGQRTPGRAFDAAMTPTYA-YSPARART 157
D AA+ + SP + P+ + ++P R+ F P+Y +SP R+
Sbjct: 1501 DGAATQYDSGSPMQENMYISSPDPDSQFSPVRQAGSENAVGFADYQPPSYGGFSPHEPRS 1560
Query: 158 PGGTAFSPAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPA 337
PGG +SP+ SP N + + +P SP+ + SP
Sbjct: 1561 PGG-GYSPS-------SPFNTSPT-------------------SPAYSPSSGY----SPT 1589
Query: 338 SPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMG--YSPSTPALAVSSPGY 505
SPG + SPRF PA + ++AP SPAY TSPG G SP++P+ + +SPG+
Sbjct: 1590 SPGMSITSPRFISSPAFSPA--SPSFAPTSPAYSPTSPGYGQAQSPTSPSYSPTSPGF 1645
Score = 59.3 bits (142), Expect = 1e-07
Identities = 56/173 (32%), Positives = 75/173 (43%), Gaps = 11/173 (6%)
Frame = +2
Query: 14 SARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTY-AYSPARARTPGGTAFSPAY- 187
S R SPA + + P + A +PT +YSP +PG + SP+Y
Sbjct: 1597 SPRFISSPAFSPASPSFAPTSPAYSPTSPGYGQAQSPTSPSYSPT---SPGFSPTSPSYS 1653
Query: 188 -TGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGR--SPAGRFTPRMSPASPGYAAM 358
T P FSP A+ FSP S A G GR SP +P+ +P SPG++
Sbjct: 1654 PTSPS-FSP--ASPVFSPTSPSYSPTSPALGGT---GRHLSPTSPTSPKYTPTSPGWSPT 1707
Query: 359 SPRFGGGLGGGPAGGAGAYAPASPAYMA--TSPG----MGYSPSTPALAVSSP 499
SP AY+P SP + TSPG GYSP++P +SP
Sbjct: 1708 SPE--------------AYSPTSPNFSGSPTSPGGPTSPGYSPTSPTFNPTSP 1746
Score = 54.3 bits (129), Expect = 4e-06
Identities = 59/193 (30%), Positives = 77/193 (39%), Gaps = 35/193 (18%)
Frame = +2
Query: 32 SPAMPESERG-YTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGFS 208
SP P S G Y+P +P A +P+ YSP +PG + SP + FS
Sbjct: 1554 SPHEPRSPGGGYSPSSPFNTSPT---SPAYSPSSGYSPT---SPGMSITSPRFISSPAFS 1607
Query: 209 PINATASFSPIMSSADAAGRATPGR-------------MTPGRSPAGRF----------- 316
P A+ SF+P ++ A +PG +PG SP
Sbjct: 1608 P--ASPSFAP---TSPAYSPTSPGYGQAQSPTSPSYSPTSPGFSPTSPSYSPTSPSFSPA 1662
Query: 317 TPRMSPASPGYAAMSPRFGG-GLGGGPAGGAG-AYAPASP--------AYMATSPGMGYS 466
+P SP SP Y+ SP GG G P Y P SP AY TSP S
Sbjct: 1663 SPVFSPTSPSYSPTSPALGGTGRHLSPTSPTSPKYTPTSPGWSPTSPEAYSPTSPNFSGS 1722
Query: 467 PSTPALAVSSPGY 505
P++P +SPGY
Sbjct: 1723 PTSPG-GPTSPGY 1734
[124][TOP]
>UniRef100_UPI00005A0B1D PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
(RPB1) isoform 1 n=2 Tax=Canis lupus familiaris
RepID=UPI00005A0B1D
Length = 1764
Score = 62.4 bits (150), Expect = 2e-08
Identities = 44/137 (32%), Positives = 64/137 (46%)
Frame = +2
Query: 95 GRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGFSPINATASFSPIMSSADAAGRAT 274
G F +A +P SPA TP +PAY G +SP A ++ A +
Sbjct: 1525 GMFFGSAPSPMGGISPAM--TPWNQGATPAY---GAWSPSVGGAMSPSYSPTSPAYEPRS 1579
Query: 275 PGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPG 454
PG TP +P SP SP Y+ SP + + + +Y+P SP+Y TSP
Sbjct: 1580 PGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNY--------SPTSPSYSPTSPSYSPTSP- 1630
Query: 455 MGYSPSTPALAVSSPGY 505
YSP++P+ + +SP Y
Sbjct: 1631 -SYSPTSPSYSPTSPSY 1646
Score = 53.9 bits (128), Expect = 6e-06
Identities = 50/190 (26%), Positives = 77/190 (40%), Gaps = 30/190 (15%)
Frame = +2
Query: 26 ARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARAR----TPGGTAFS 178
A SP+ + Y P G TP + +P+Y+ YSP +P + S
Sbjct: 1563 AMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTS 1622
Query: 179 PAY--TGPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGY 349
P+Y T P +SP + + S SP S + T +P +P SP SP Y
Sbjct: 1623 PSYSPTSPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1681
Query: 350 AAMSPRFG------GGLGGGPAGGAGAYAPASPAYMATSPGMG------------YSPST 475
+ SP + + + +Y+P SP+Y TSP YSP++
Sbjct: 1682 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPSRPNYTPTSPSYSPTS 1741
Query: 476 PALAVSSPGY 505
P+ + +SP Y
Sbjct: 1742 PSYSPTSPNY 1751
[125][TOP]
>UniRef100_Q2HDK0 DNA-directed RNA polymerase n=1 Tax=Chaetomium globosum
RepID=Q2HDK0_CHAGB
Length = 1756
Score = 62.4 bits (150), Expect = 2e-08
Identities = 46/143 (32%), Positives = 70/143 (48%), Gaps = 6/143 (4%)
Frame = +2
Query: 95 GRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGFSPINATASFSPIMSSADAAGRAT 274
G F ++ YA SP RA +P T+ + ++ GG+SP + A +SP DA GR
Sbjct: 1546 GGGFGSSTVNPYATSP-RATSPFSTSPTSPFSYGGGYSP-TSPAGYSPTSPLLDAGGRYA 1603
Query: 275 PGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGP--AGGAGAYAPASPA----Y 436
+P+ SP+SP ++ SP G P + + +Y+PASPA Y
Sbjct: 1604 S-------------SPQFSPSSPSFSPTSPMLRPGSPTSPNYSPTSPSYSPASPAATRHY 1650
Query: 437 MATSPGMGYSPSTPALAVSSPGY 505
TSP SP++P+ + +SP Y
Sbjct: 1651 SPTSPQQFNSPTSPSYSPTSPSY 1673
[126][TOP]
>UniRef100_C4Y5N3 Putative uncharacterized protein n=1 Tax=Clavispora lusitaniae ATCC
42720 RepID=C4Y5N3_CLAL4
Length = 281
Score = 62.4 bits (150), Expect = 2e-08
Identities = 52/166 (31%), Positives = 77/166 (46%), Gaps = 8/166 (4%)
Frame = +2
Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY--T 190
SP P S G +P G +PG +PTY+ YSP +P + SP+Y T
Sbjct: 54 SPTSPFSYGGASPAFGGATSPGYG---GTSPTYSPTSPSYSPT---SPSYSPTSPSYSPT 107
Query: 191 GPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPR 367
P +SP + + S SP S + T +P +P SP SP Y+ SP
Sbjct: 108 SPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 166
Query: 368 FGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
+ + + +Y+P SP+Y TSP YSP++P+ + +SP Y
Sbjct: 167 Y--------SPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 202
Score = 53.9 bits (128), Expect = 6e-06
Identities = 46/166 (27%), Positives = 75/166 (45%), Gaps = 8/166 (4%)
Frame = +2
Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY--T 190
SP+ + Y+P ++ +P+Y+ YSP +P + SP+Y T
Sbjct: 87 SPSYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPSYSPT---SPSYSPTSPSYSPT 142
Query: 191 GPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPR 367
P +SP + + S SP S + T +P +P SP SP Y+ SP
Sbjct: 143 SPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 201
Query: 368 FGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
+ + + +Y+P SP+Y TSP YSP++P+ + +SP Y
Sbjct: 202 Y--------SPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 237
[127][TOP]
>UniRef100_A8Q5I6 DNA-directed RNA polymerase n=1 Tax=Malassezia globosa CBS 7966
RepID=A8Q5I6_MALGO
Length = 1607
Score = 62.4 bits (150), Expect = 2e-08
Identities = 50/138 (36%), Positives = 69/138 (50%), Gaps = 6/138 (4%)
Frame = +2
Query: 110 AAMTPTYAYSPARARTPGGTAFSPAYTGPGGFSPINATAS-FSPIMSSADAAGRATPGRM 286
AA + AYSP R G A SP+Y SP + + S SP++ +++A T RM
Sbjct: 1380 AAGATSPAYSPTSPRIFAG-ATSPSY------SPTSPSYSPSSPVIDASNARSTYT-SRM 1431
Query: 287 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAG---GAGA--YAPASPAYMATSP 451
+P +P SP SP Y+ SP++ GP G GA Y+P SP Y TSP
Sbjct: 1432 SPASPNYSPTSPVYSPTSPAYSPTSPQYSPTSPAGPRGRRLGASGPKYSPTSPQYSPTSP 1491
Query: 452 GMGYSPSTPALAVSSPGY 505
YSP++P + +SP Y
Sbjct: 1492 --QYSPTSPQYSPTSPQY 1507
Score = 54.7 bits (130), Expect = 3e-06
Identities = 44/134 (32%), Positives = 60/134 (44%), Gaps = 17/134 (12%)
Frame = +2
Query: 149 ARTPGGTAFSPAYTGPGGFSP---INATASFSPIMS---SADAAGRATPGRMTPGRSPAG 310
ARTPGG +P +G + ASFSP++ G +P R+P G
Sbjct: 1285 ARTPGG--MTPYDSGSPNIDDDFRVQQQASFSPLVQVGGDEGGYGEYLSAGQSPMRTPLG 1342
Query: 311 RFTPR--MSPASPGYAAMSPRFGG---GLGG-----GPAGGAG-AYAPASPAYMATSPGM 457
+P +P SPGY SP + LG G AG AY+P SP A +
Sbjct: 1343 AQSPGYGFAPTSPGYVPTSPAYNATSPALGAMSPWVGAAGATSPAYSPTSPRIFAGATSP 1402
Query: 458 GYSPSTPALAVSSP 499
YSP++P+ + SSP
Sbjct: 1403 SYSPTSPSYSPSSP 1416
[128][TOP]
>UniRef100_Q84KP6 DNA-directed RNA polymerase n=1 Tax=Cyanidioschyzon merolae
RepID=Q84KP6_CYAME
Length = 1819
Score = 62.0 bits (149), Expect = 2e-08
Identities = 56/178 (31%), Positives = 74/178 (41%), Gaps = 34/178 (19%)
Frame = +2
Query: 62 YTPGREGQRTPGRAFDA----------------AMTPTYAYSPARARTPGGTAFSPAYT- 190
YTPG TPG A D + +P +SPA + GG A A
Sbjct: 1539 YTPGA----TPGMASDGFAAPWTPSLNLASPYGSFSPAVGFSPATSTYVGGDAMKDAGRY 1594
Query: 191 GPGGFSPI---NATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRM--------SPA 337
G GG SP +A+A+ S G T G +P +PR+ SP
Sbjct: 1595 GLGGTSPFASFSASATTPNWAPSPAGGGTGTLGAFSPSSPAYSPTSPRLVSPTSPAYSPT 1654
Query: 338 SPGYAAMSPRFGGGLGG----GPAGG--AGAYAPASPAYMATSPGMGYSPSTPALAVS 493
SP Y+ SP + PA + AY+P SPAY +SP + YSPS+P +A S
Sbjct: 1655 SPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPSSPNVAYSPSSPNVAYS 1712
Score = 54.3 bits (129), Expect = 4e-06
Identities = 48/167 (28%), Positives = 74/167 (44%), Gaps = 9/167 (5%)
Frame = +2
Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGFSP 211
SPA + Y+P A+ SPA + + A+SP+ +SP
Sbjct: 1655 SPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPSSPNVAYSPSSPNVA-YSP 1713
Query: 212 INATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRM-----SPASPG--YAAMSPRF 370
+ ++SP + A ++P SP ++P SP+SP Y+ SP
Sbjct: 1714 SSPNVAYSPSSPNV-AYSPSSPNVAYSPSSPNVAYSPSSPNVAYSPSSPNVAYSPSSPN- 1771
Query: 371 GGGLGGGPAGGAGAYAPASP--AYMATSPGMGYSPSTPALAVSSPGY 505
+ P+ AY+P+SP AY +SP + YSPS+PA + SSP Y
Sbjct: 1772 ---VAYSPSSPV-AYSPSSPNVAYSPSSPNVAYSPSSPAFSPSSPVY 1814
[129][TOP]
>UniRef100_P18616 DNA-directed RNA polymerase II subunit RPB1 n=1 Tax=Arabidopsis
thaliana RepID=RPB1_ARATH
Length = 1840
Score = 62.0 bits (149), Expect = 2e-08
Identities = 51/166 (30%), Positives = 76/166 (45%), Gaps = 8/166 (4%)
Frame = +2
Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY--T 190
SP + Y+P G A+ +P+Y+ YSP +P + SP+Y T
Sbjct: 1570 SPGYSPTSPTYSPSSPGYSPTSPAYSPT-SPSYSPTSPSYSPT---SPSYSPTSPSYSPT 1625
Query: 191 GPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPR 367
P +SP + + S SP S A T +P +P SP SP Y+ SP
Sbjct: 1626 SPS-YSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1684
Query: 368 FGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
+ + + +Y+P SPAY TSP GYSP++P+ + +SP Y
Sbjct: 1685 Y--------SPTSPSYSPTSPAYSPTSP--GYSPTSPSYSPTSPSY 1720
Score = 57.8 bits (138), Expect = 4e-07
Identities = 51/169 (30%), Positives = 73/169 (43%), Gaps = 11/169 (6%)
Frame = +2
Query: 32 SPAMPESERGYTPGREGQRTPGRAFDA---AMTPTY-AYSPARARTPGGTAFSPAY--TG 193
SP+ + Y+P A+ A +PT AYSP +P + SP+Y T
Sbjct: 1619 SPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPT---SPSYSPTSPSYSPTS 1675
Query: 194 PGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRF 370
P +SP + + S SP S A T +P +P P SP Y S ++
Sbjct: 1676 PS-YSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYGPTSPSYNPQSAKY 1734
Query: 371 GGGLGGGPAGG----AGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
+ P+ A Y+P SP Y TSP YSP++P+ + SSP Y
Sbjct: 1735 SPSIAYSPSNARLSPASPYSPTSPNYSPTSPS--YSPTSPSYSPSSPTY 1781
Score = 54.7 bits (130), Expect = 3e-06
Identities = 45/155 (29%), Positives = 57/155 (36%), Gaps = 7/155 (4%)
Frame = +2
Query: 62 YTPGREGQRTPGRA-------FDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGFSPINA 220
Y G E TP R+ + M+P Y SP +P A Y G FSP ++
Sbjct: 1483 YMDGLEFGMTPARSPVSGTPYHEGMMSPNYLLSPNMRLSPMSDAQFSPYVGGMAFSPSSS 1542
Query: 221 TASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAG 400
P SP+SPGY+ SP
Sbjct: 1543 ---------------------------------PGYSPSSPGYSPTSP------------ 1557
Query: 401 GAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
Y+P SP Y TSPG YSP++P + SSPGY
Sbjct: 1558 ---GYSPTSPGYSPTSPG--YSPTSPTYSPSSPGY 1587
Score = 54.3 bits (129), Expect = 4e-06
Identities = 48/172 (27%), Positives = 75/172 (43%), Gaps = 15/172 (8%)
Frame = +2
Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTY-----AYSPARARTPGGTAFSPAYT-- 190
SP+ + Y+P ++ +P+Y AYSP +PG + SP+Y+
Sbjct: 1661 SPSYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPAYSPT---SPGYSPTSPSYSPT 1716
Query: 191 ----GPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAM 358
GP S +A +SP ++ + + R +P SP +P SP SP Y+
Sbjct: 1717 SPSYGPTSPSYNPQSAKYSPSIAYSPSNARLSPA------SPYSPTSPNYSPTSPSYSPT 1770
Query: 359 SPRFGGGLGGGPAGGAGAYAPASP----AYMATSPGMGYSPSTPALAVSSPG 502
SP + + + Y+P+SP A SP GYSP+ P + SS G
Sbjct: 1771 SPSY--------SPSSPTYSPSSPYSSGASPDYSPSAGYSPTLPGYSPSSTG 1814
[130][TOP]
>UniRef100_Q9XZU8 DNA-directed RNA polymerase (Fragment) n=1 Tax=Drosophila
pseudoobscura pseudoobscura RepID=Q9XZU8_DROPS
Length = 1811
Score = 61.6 bits (148), Expect = 3e-08
Identities = 54/185 (29%), Positives = 76/185 (41%), Gaps = 18/185 (9%)
Frame = +2
Query: 5 AAASARIARS-PAMPESERGYTPGREGQRTPGRAFDAAM----TPTYA------YSPARA 151
AAAS R A + P GY+P G + +P++A YSP A
Sbjct: 1535 AAASPRYASTTPNFNPQSTGYSPSASGYSPTSPVYSPTSNFPSSPSFAGSGSNMYSPGNA 1594
Query: 152 RTPGGTAFSPAYTGPGGFSPINATASFSPIMSSADAAGRATP--GRMTPGRSPAGRFTPR 325
+P T +SP +SP + S+SP S+ + +P +P SP +P
Sbjct: 1595 YSPSSTNYSP---NSPSYSP--TSPSYSP---SSPSYSPTSPCYSPTSPSYSPT---SPN 1643
Query: 326 MSPASPGYAAMSPRFGGGLGGGPAGGA-----GAYAPASPAYMATSPGMGYSPSTPALAV 490
+PA+P Y+ SP + PA A Y+P SP Y SP SP +P
Sbjct: 1644 YTPATPSYSPTSPNYSASPHYSPASPAYSQTGAKYSPTSPTYSPPSPSYDGSPGSPQYTP 1703
Query: 491 SSPGY 505
SP Y
Sbjct: 1704 GSPQY 1708
Score = 57.0 bits (136), Expect = 7e-07
Identities = 49/152 (32%), Positives = 67/152 (44%), Gaps = 3/152 (1%)
Frame = +2
Query: 59 GYTPGREGQRTPGRAFDAAMTPTYAYSPAR--ARTPGGTAFSP-AYTGPGGFSPINATAS 229
G TP TP + TP Y P A TPGG +FSP A + G SP S
Sbjct: 1419 GSTPSMTPPMTP---WVNCNTPRYFSPPGHVSAMTPGGPSFSPSAASDASGMSP-----S 1470
Query: 230 FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAG 409
+SP A ++P P SP + P SP Y+ SP + P G +
Sbjct: 1471 WSP------AHPGSSPSSPAPSMSP---YYPASPSVSPSYSPTSPNY---TASSPGGASP 1518
Query: 410 AYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
Y+P+SP Y TSP Y+ ++P A ++P +
Sbjct: 1519 NYSPSSPNYSPTSP--LYAAASPRYASTTPNF 1548
Score = 56.2 bits (134), Expect = 1e-06
Identities = 53/162 (32%), Positives = 75/162 (46%), Gaps = 4/162 (2%)
Frame = +2
Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-YSPARARTPGGTAFSPAYTGPGG-F 205
SP+ + YTP TP+Y+ SP + +P + SPAY+ G +
Sbjct: 1634 SPSYSPTSPNYTPA---------------TPSYSPTSPNYSASPHYSPASPAYSQTGAKY 1678
Query: 206 SPINATASF-SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGL 382
SP + T S SP + + + TPG +P SPA +P+ SP SP Y+ SP+
Sbjct: 1679 SPTSPTYSPPSPSYDGSPGSPQYTPG--SPQYSPA---SPKYSPTSPLYSPSSPQHSPSN 1733
Query: 383 GGGPAGGAGAYAPASPAYMATSPGMG-YSPSTPALAVSSPGY 505
P G Y+ SP Y SP M YSPS+ + +SP Y
Sbjct: 1734 QYSPTG--STYSATSPRY---SPNMSIYSPSSTKYSPTSPTY 1770
[131][TOP]
>UniRef100_Q29IN2 DNA-directed RNA polymerase n=1 Tax=Drosophila pseudoobscura
pseudoobscura RepID=Q29IN2_DROPS
Length = 1889
Score = 61.6 bits (148), Expect = 3e-08
Identities = 54/185 (29%), Positives = 76/185 (41%), Gaps = 18/185 (9%)
Frame = +2
Query: 5 AAASARIARS-PAMPESERGYTPGREGQRTPGRAFDAAM----TPTYA------YSPARA 151
AAAS R A + P GY+P G + +P++A YSP A
Sbjct: 1613 AAASPRYASTTPNFNPQSTGYSPSASGYSPTSPVYSPTSNFPSSPSFAGSGSNMYSPGNA 1672
Query: 152 RTPGGTAFSPAYTGPGGFSPINATASFSPIMSSADAAGRATP--GRMTPGRSPAGRFTPR 325
+P T +SP +SP + S+SP S+ + +P +P SP +P
Sbjct: 1673 YSPSSTNYSP---NSPSYSP--TSPSYSP---SSPSYSPTSPCYSPTSPSYSPT---SPN 1721
Query: 326 MSPASPGYAAMSPRFGGGLGGGPAGGA-----GAYAPASPAYMATSPGMGYSPSTPALAV 490
+PA+P Y+ SP + PA A Y+P SP Y SP SP +P
Sbjct: 1722 YTPATPSYSPTSPNYSASPHYSPASPAYSQTGAKYSPTSPTYSPPSPSYDGSPGSPQYTP 1781
Query: 491 SSPGY 505
SP Y
Sbjct: 1782 GSPQY 1786
Score = 57.0 bits (136), Expect = 7e-07
Identities = 49/152 (32%), Positives = 67/152 (44%), Gaps = 3/152 (1%)
Frame = +2
Query: 59 GYTPGREGQRTPGRAFDAAMTPTYAYSPAR--ARTPGGTAFSP-AYTGPGGFSPINATAS 229
G TP TP + TP Y P A TPGG +FSP A + G SP S
Sbjct: 1497 GSTPSMTPPMTP---WVNCNTPRYFSPPGHVSAMTPGGPSFSPSAASDASGMSP-----S 1548
Query: 230 FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAG 409
+SP A ++P P SP + P SP Y+ SP + P G +
Sbjct: 1549 WSP------AHPGSSPSSPAPSMSP---YYPASPSVSPSYSPTSPNY---TASSPGGASP 1596
Query: 410 AYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
Y+P+SP Y TSP Y+ ++P A ++P +
Sbjct: 1597 NYSPSSPNYSPTSP--LYAAASPRYASTTPNF 1626
Score = 56.2 bits (134), Expect = 1e-06
Identities = 53/162 (32%), Positives = 75/162 (46%), Gaps = 4/162 (2%)
Frame = +2
Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-YSPARARTPGGTAFSPAYTGPGG-F 205
SP+ + YTP TP+Y+ SP + +P + SPAY+ G +
Sbjct: 1712 SPSYSPTSPNYTPA---------------TPSYSPTSPNYSASPHYSPASPAYSQTGAKY 1756
Query: 206 SPINATASF-SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGL 382
SP + T S SP + + + TPG +P SPA +P+ SP SP Y+ SP+
Sbjct: 1757 SPTSPTYSPPSPSYDGSPGSPQYTPG--SPQYSPA---SPKYSPTSPLYSPSSPQHSPSN 1811
Query: 383 GGGPAGGAGAYAPASPAYMATSPGMG-YSPSTPALAVSSPGY 505
P G Y+ SP Y SP M YSPS+ + +SP Y
Sbjct: 1812 QYSPTG--STYSATSPRY---SPNMSIYSPSSTKYSPTSPTY 1848
[132][TOP]
>UniRef100_B4H2R8 DNA-directed RNA polymerase n=1 Tax=Drosophila persimilis
RepID=B4H2R8_DROPE
Length = 1804
Score = 61.6 bits (148), Expect = 3e-08
Identities = 54/185 (29%), Positives = 76/185 (41%), Gaps = 18/185 (9%)
Frame = +2
Query: 5 AAASARIARS-PAMPESERGYTPGREGQRTPGRAFDAAM----TPTYA------YSPARA 151
AAAS R A + P GY+P G + +P++A YSP A
Sbjct: 1547 AAASPRYASTTPNFNPQSTGYSPSASGYSPTSPVYSPTSNFPSSPSFAGSGSNMYSPGNA 1606
Query: 152 RTPGGTAFSPAYTGPGGFSPINATASFSPIMSSADAAGRATP--GRMTPGRSPAGRFTPR 325
+P T +SP +SP + S+SP S+ + +P +P SP +P
Sbjct: 1607 YSPSSTNYSP---NSPSYSP--TSPSYSP---SSPSYSPTSPCYSPTSPSYSPT---SPN 1655
Query: 326 MSPASPGYAAMSPRFGGGLGGGPAGGA-----GAYAPASPAYMATSPGMGYSPSTPALAV 490
+PA+P Y+ SP + PA A Y+P SP Y SP SP +P
Sbjct: 1656 YTPATPSYSPTSPNYSASPHYSPASPAYSQTGAKYSPTSPTYSPPSPSYDGSPGSPQYTP 1715
Query: 491 SSPGY 505
SP Y
Sbjct: 1716 GSPQY 1720
Score = 56.2 bits (134), Expect = 1e-06
Identities = 53/162 (32%), Positives = 75/162 (46%), Gaps = 4/162 (2%)
Frame = +2
Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-YSPARARTPGGTAFSPAYTGPGG-F 205
SP+ + YTP TP+Y+ SP + +P + SPAY+ G +
Sbjct: 1646 SPSYSPTSPNYTPA---------------TPSYSPTSPNYSASPHYSPASPAYSQTGAKY 1690
Query: 206 SPINATASF-SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGL 382
SP + T S SP + + + TPG +P SPA +P+ SP SP Y+ SP+
Sbjct: 1691 SPTSPTYSPPSPSYDGSPGSPQYTPG--SPQYSPA---SPKYSPTSPLYSPSSPQHSPSN 1745
Query: 383 GGGPAGGAGAYAPASPAYMATSPGMG-YSPSTPALAVSSPGY 505
P G Y+ SP Y SP M YSPS+ + +SP Y
Sbjct: 1746 QYSPTG--STYSATSPRY---SPNMSIYSPSSTKYSPTSPTY 1782
[133][TOP]
>UniRef100_C2AIT9 Putative uncharacterized protein n=1 Tax=Tsukamurella paurometabola
DSM 20162 RepID=C2AIT9_TSUPA
Length = 623
Score = 61.2 bits (147), Expect = 4e-08
Identities = 50/151 (33%), Positives = 70/151 (46%), Gaps = 7/151 (4%)
Frame = +2
Query: 65 TPGREGQRT-----PGRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGFSPINATAS 229
TPG + QR+ P AA A + A AR G A + A T G + A A
Sbjct: 465 TPGADTQRSTSTGSPAPVVSAAAARGPALTGAVARADSGRAGAEALTTDGAAT---AAAV 521
Query: 230 FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAG 409
+P +S+ D A +TP R TPGR+ R TP + A P ++ + P+GG G
Sbjct: 522 PTPSVSAPDDAAASTPERATPGRTTPERSTPADTIARPSDSSATTGSNADSPQSPSGGTG 581
Query: 410 --AYAPASPAYMATSPGMGYSPSTPALAVSS 496
+ A +SP+ S G G SP++ A SS
Sbjct: 582 VTSSAASSPSGTGESAGSGASPASTGSAASS 612
[134][TOP]
>UniRef100_C5LSN8 P35 antigen, putative (Fragment) n=1 Tax=Perkinsus marinus ATCC
50983 RepID=C5LSN8_9ALVE
Length = 170
Score = 61.2 bits (147), Expect = 4e-08
Identities = 56/161 (34%), Positives = 76/161 (47%), Gaps = 3/161 (1%)
Frame = +2
Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTY-AYSPAR-ARTPGGTAFSPAYTGPGGF 205
SPA + Y+P A+ +PT AYSP A +P A+SP T P +
Sbjct: 5 SPAYSPTSPAYSPTSPAYSPTSPAY----SPTSPAYSPTSPAYSPTSPAYSP--TSPA-Y 57
Query: 206 SPIN-ATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGL 382
SP + A + SP S A T +P SP +P SP SP Y+ SP +
Sbjct: 58 SPTSPAYSPTSPAYSPTSPAYSPT----SPAYSPT---SPAYSPTSPAYSPTSPSY---- 106
Query: 383 GGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
+ + AY+P SPAY TSP YSP++PA + +SP Y
Sbjct: 107 ----SPTSPAYSPTSPAYSPTSP--AYSPTSPAYSPTSPAY 141
Score = 55.1 bits (131), Expect = 3e-06
Identities = 47/126 (37%), Positives = 60/126 (47%), Gaps = 2/126 (1%)
Frame = +2
Query: 134 YSPAR-ARTPGGTAFSPAYTGPGGFSPIN-ATASFSPIMSSADAAGRATPGRMTPGRSPA 307
YSP A +P A+SP T P +SP + A + SP S A T +P SP
Sbjct: 1 YSPTSPAYSPTSPAYSP--TSPA-YSPTSPAYSPTSPAYSPTSPAYSPT----SPAYSPT 53
Query: 308 GRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALA 487
+P SP SP Y+ SP AY+P SPAY TSP YSP++PA +
Sbjct: 54 ---SPAYSPTSPAYSPTSP---------------AYSPTSPAYSPTSP--AYSPTSPAYS 93
Query: 488 VSSPGY 505
+SP Y
Sbjct: 94 PTSPAY 99
[135][TOP]
>UniRef100_Q6CL79 DNA-directed RNA polymerase n=1 Tax=Kluyveromyces lactis
RepID=Q6CL79_KLULA
Length = 1720
Score = 61.2 bits (147), Expect = 4e-08
Identities = 52/166 (31%), Positives = 80/166 (48%), Gaps = 11/166 (6%)
Frame = +2
Query: 41 MPESERGYTPGREGQRTP-----GRA-FDAAMTPTYAYSPARARTPGGTAFSPAYTGPGG 202
MPE + T G+EG TP G A + + +SP + G A + +T GG
Sbjct: 1455 MPEHKEVKTEGQEGGATPYSNESGLANAEINVKDELMFSPL-VESGGADALAGGFTAYGG 1513
Query: 203 FSPINATASFSPIMSSADAAGR---ATPG--RMTPGRSPAGRFTPRMSPASPGYAAMSPR 367
+AT+ FS + + G ++PG +PG SP +P SP SP Y+ SP
Sbjct: 1514 ADYGSATSPFSGYGNGPTSPGFGEVSSPGFSPTSPGYSPT---SPSYSPTSPSYSPTSPS 1570
Query: 368 FGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
+ + + +Y+P SP+Y TSP YSP++P+ + +SP Y
Sbjct: 1571 Y--------SPTSPSYSPTSPSYSPTSPS--YSPTSPSYSPTSPSY 1606
Score = 56.2 bits (134), Expect = 1e-06
Identities = 47/166 (28%), Positives = 75/166 (45%), Gaps = 8/166 (4%)
Frame = +2
Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY--T 190
SP + GY+P ++ +P+Y+ YSP +P + SP+Y T
Sbjct: 1540 SPGFSPTSPGYSPTSPSYSPTSPSYSPT-SPSYSPTSPSYSPT---SPSYSPTSPSYSPT 1595
Query: 191 GPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPR 367
P +SP + + S SP S + T +P +P SP SP Y+ SP
Sbjct: 1596 SPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1654
Query: 368 FGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
+ + + +Y+P SP+Y TSP YSP++P+ + +SP Y
Sbjct: 1655 Y--------SPTSPSYSPTSPSYSPTSPS--YSPTSPSYSPTSPSY 1690
Score = 55.5 bits (132), Expect = 2e-06
Identities = 49/167 (29%), Positives = 77/167 (46%), Gaps = 9/167 (5%)
Frame = +2
Query: 32 SPAMPE-SERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY-- 187
SP E S G++P G ++ +P+Y+ YSP +P + SP+Y
Sbjct: 1532 SPGFGEVSSPGFSPTSPGYSPTSPSYSPT-SPSYSPTSPSYSPT---SPSYSPTSPSYSP 1587
Query: 188 TGPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSP 364
T P +SP + + S SP S + T +P +P SP SP Y+ SP
Sbjct: 1588 TSPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1646
Query: 365 RFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
+ + + +Y+P SP+Y TSP YSP++P+ + +SP Y
Sbjct: 1647 SY--------SPTSPSYSPTSPSYSPTSPS--YSPTSPSYSPTSPSY 1683
Score = 54.3 bits (129), Expect = 4e-06
Identities = 41/140 (29%), Positives = 63/140 (45%), Gaps = 3/140 (2%)
Frame = +2
Query: 95 GRAFDAAMTPTYAYSPARARTPGGTAFSPAY--TGPGGFSPINATAS-FSPIMSSADAAG 265
G + +A +P Y G SP + T PG +SP + + S SP S +
Sbjct: 1513 GADYGSATSPFSGYGNGPTSPGFGEVSSPGFSPTSPG-YSPTSPSYSPTSPSYSPTSPSY 1571
Query: 266 RATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMAT 445
T +P +P SP SP Y+ SP + + + +Y+P SP+Y T
Sbjct: 1572 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPT 1623
Query: 446 SPGMGYSPSTPALAVSSPGY 505
SP YSP++P+ + +SP Y
Sbjct: 1624 SPS--YSPTSPSYSPTSPSY 1641
Score = 53.9 bits (128), Expect = 6e-06
Identities = 45/145 (31%), Positives = 69/145 (47%), Gaps = 3/145 (2%)
Frame = +2
Query: 80 GQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAY--TGPGGFSPINATAS-FSPIMSS 250
G +PG F +P +SP +PG + SP+Y T P +SP + + S SP S
Sbjct: 1529 GPTSPG--FGEVSSP--GFSPT---SPGYSPTSPSYSPTSPS-YSPTSPSYSPTSPSYSP 1580
Query: 251 ADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASP 430
+ T +P +P SP SP Y+ SP + + + +Y+P SP
Sbjct: 1581 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSP 1632
Query: 431 AYMATSPGMGYSPSTPALAVSSPGY 505
+Y TSP YSP++P+ + +SP Y
Sbjct: 1633 SYSPTSPS--YSPTSPSYSPTSPSY 1655
[136][TOP]
>UniRef100_C9SR21 DNA-directed RNA polymerase II subunit RPB1 n=1 Tax=Verticillium
albo-atrum VaMs.102 RepID=C9SR21_9PEZI
Length = 1756
Score = 61.2 bits (147), Expect = 4e-08
Identities = 53/171 (30%), Positives = 77/171 (45%), Gaps = 12/171 (7%)
Frame = +2
Query: 5 AAASARIARSPAMPESE----RGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTA 172
A A++ SP P S GY+P +PG + +PT AR
Sbjct: 1556 AGATSPFTTSPTSPFSSFAGAGGYSP-----TSPGGGY----SPTSPLMDGGARYATSPQ 1606
Query: 173 FSPAYTGPGGFSPIN-----ATASFSPIMSSADAAGRATPGRMTPGRSPA---GRFTPRM 328
FSP+ SP++ A+ ++SP S +P +P SPA +P
Sbjct: 1607 FSPSSPSFSPTSPVHRPTSPASPNYSPTSPSYSPTSPTSPRHYSP-TSPAQFNSPTSPSY 1665
Query: 329 SPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPA 481
SPASP Y+ SP G GP + +Y+PASP++ TSP YSP++P+
Sbjct: 1666 SPASPSYSPTSPNLHGA---GPT--SPSYSPASPSWSPTSPEHSYSPTSPS 1711
Score = 59.3 bits (142), Expect = 1e-07
Identities = 48/154 (31%), Positives = 68/154 (44%), Gaps = 4/154 (2%)
Frame = +2
Query: 50 SERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGFSPINATAS 229
+E G T G G +PGRA T + SP + FS ++ G GG+SP +
Sbjct: 1539 TEYGGTYGGFGGASPGRA---GATSPFTTSPT-------SPFS-SFAGAGGYSPTSPGGG 1587
Query: 230 FSPIMSSADAAGR-ATPGRMTPGR---SPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPA 397
+SP D R AT + +P SP SPASP Y+ SP + P
Sbjct: 1588 YSPTSPLMDGGARYATSPQFSPSSPSFSPTSPVHRPTSPASPNYSPTSPSYSPTSPTSPR 1647
Query: 398 GGAGAYAPASPAYMATSPGMGYSPSTPALAVSSP 499
Y+P SPA + YSP++P+ + +SP
Sbjct: 1648 H----YSPTSPAQFNSPTSPSYSPASPSYSPTSP 1677
[137][TOP]
>UniRef100_B9WN64 DNA-directed RNA polymerase n=1 Tax=Candida dubliniensis CD36
RepID=B9WN64_CANDC
Length = 1735
Score = 61.2 bits (147), Expect = 4e-08
Identities = 40/115 (34%), Positives = 58/115 (50%), Gaps = 2/115 (1%)
Frame = +2
Query: 167 TAFSPAYTGPG-GFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPAS 340
TA SP Y PG G+SP + + S SP S + T +P +P SP S
Sbjct: 1530 TATSPGYASPGYGYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1589
Query: 341 PGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
P Y+ SP + + + +Y+P SP+Y TSP GYSP++P+ + +SP Y
Sbjct: 1590 PSYSPTSPSYSP-TSPSYSPTSPSYSPTSPSYSPTSP--GYSPTSPSYSPTSPSY 1641
Score = 56.6 bits (135), Expect = 9e-07
Identities = 50/166 (30%), Positives = 81/166 (48%), Gaps = 8/166 (4%)
Frame = +2
Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY--T 190
SP+ + Y+P ++ +P+Y+ YSP +PG + SP+Y T
Sbjct: 1582 SPSYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPSYSPT---SPGYSPTSPSYSPT 1637
Query: 191 GPGGFSPINATASFSPIMSS-ADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPR 367
P +SP + S+SP S + + + +P +P SP +P+ SP SP Y+ SP+
Sbjct: 1638 SPS-YSP--TSPSYSPTSPSYSPTSPQYSP--TSPSYSPT---SPQYSPTSPSYSPTSPQ 1689
Query: 368 FGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
+ + + +Y+P SP Y TSP YSP++P + SPGY
Sbjct: 1690 Y--------SPTSPSYSPTSPQYSPTSPQ--YSPTSPRYSPGSPGY 1725
[138][TOP]
>UniRef100_Q692G0 Major ampullate spidroin 2 (Fragment) n=1 Tax=Nephila clavipes
RepID=Q692G0_NEPCL
Length = 313
Score = 60.8 bits (146), Expect = 5e-08
Identities = 57/194 (29%), Positives = 79/194 (40%), Gaps = 28/194 (14%)
Frame = +2
Query: 5 AAASARIARSPAM----PESERGYTPGREGQRTPGRAFDAA---MTPTYAYSPARARTPG 163
AAA+A A P + GY PG++G G A AA Y P + + PG
Sbjct: 2 AAAAAAAAAGPGGYGPGQQGPGGYGPGQQGPSGAGSAAAAAGPGQQGLGGYGPGQ-QGPG 60
Query: 164 GTAFSPAYTGPGGFSPINATAS-------------FSPIM-------SSADAAGRATPGR 283
G + P GPGG+ P +A+A+ + P S++ AA A PG
Sbjct: 61 G--YGPGQQGPGGYGPGSASAAAAAAGPGQQGPGGYGPGQQGPSGPGSASAAAAAAGPGG 118
Query: 284 MTPGRSPAGRFTP-RMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMG 460
PG+ G + P + P+ PG AA + G GG G P A A++ G
Sbjct: 119 YGPGQQGPGGYAPGQQGPSGPGSAAAAAAAAAGPGGYGPAQQGPSGPGIAASAASAGPGG 178
Query: 461 YSPSTPALAVSSPG 502
Y P+ A PG
Sbjct: 179 YGPAQQGPAGYGPG 192
[139][TOP]
>UniRef100_Q8WSZ3 Dragline silk protein spidroin 2 (Fragment) n=1 Tax=Nephila clavata
RepID=Q8WSZ3_NEPCV
Length = 301
Score = 60.5 bits (145), Expect = 6e-08
Identities = 52/152 (34%), Positives = 63/152 (41%), Gaps = 6/152 (3%)
Frame = +2
Query: 59 GYTPGREGQRTPGRAFDAAMTPTYAYSPARART--PGGTAFSPAYTGPGGFSPINATASF 232
GY P G PG A AA Y P + R PGG A + A GPGG+ P S
Sbjct: 122 GYGPS--GLSGPGGAAAAAAAGPGGYGPGQQRPSGPGGAAAAAAAAGPGGYGPSQRGPS- 178
Query: 233 SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 412
P ++A AAG A PG PG+ P+ PG AA + G G G G
Sbjct: 179 GPGSAAAAAAG-AGPGGYGPGQK---------GPSGPGSAAAAAAAGPGGYGPSQQGPAR 228
Query: 413 YAPASPAYMATSPG----MGYSPSTPALAVSS 496
Y P+ P A + GY P A A +S
Sbjct: 229 YGPSGPGSAAAAAAGAGTAGYGPGPQASAAAS 260
Score = 55.1 bits (131), Expect = 3e-06
Identities = 54/193 (27%), Positives = 70/193 (36%), Gaps = 28/193 (14%)
Frame = +2
Query: 5 AAASARIARSPAMPESERGYTPGREG--QRTPGRAFDAAMTPTYAYSP-------ARART 157
A+A+A A P GY PG++G Q+ PG+ A P+ P A A
Sbjct: 46 ASAAAAAAAGPG------GYGPGQQGPGQQGPGQQGPAGYGPSGPSGPGGAAAAAAAAAG 99
Query: 158 PGGTAFS--------PAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPG------ 295
PGG P GP G+ P + ++A G PG+ P
Sbjct: 100 PGGYGLGQQGPGQQGPGQQGPAGYGPSGLSGPGGAAAAAAAGPGGYGPGQQRPSGPGGAA 159
Query: 296 -----RSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMG 460
P G + P+ PG AA + G G GG G G P S A A + G
Sbjct: 160 AAAAAAGPGGYGPSQRGPSGPGSAAAAAA-GAGPGGYGPGQKGPSGPGSAAAAAAAGPGG 218
Query: 461 YSPSTPALAVSSP 499
Y PS A P
Sbjct: 219 YGPSQQGPARYGP 231
Score = 53.5 bits (127), Expect = 8e-06
Identities = 46/129 (35%), Positives = 54/129 (41%), Gaps = 5/129 (3%)
Frame = +2
Query: 59 GYTPGREGQRTPGRAFDAAMTPT---YAYSPARARTPGGTAFSPAYTGPGGFSPINATAS 229
GY PG++ PG A AA Y S PG A + A GPGG+ P S
Sbjct: 144 GYGPGQQRPSGPGGAAAAAAAAGPGGYGPSQRGPSGPGSAAAAAAGAGPGGYGPGQKGPS 203
Query: 230 FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGG--GLGGGPAGG 403
SA AA A PG G P+ + R P+ PG AA + G G G GP
Sbjct: 204 GP---GSAAAAAAAGPG----GYGPSQQGPARYGPSGPGSAAAAAAGAGTAGYGPGPQAS 256
Query: 404 AGAYAPASP 430
A A ASP
Sbjct: 257 AAASRLASP 265
[140][TOP]
>UniRef100_B4R347 RNA polymerase II 215kD subunit n=1 Tax=Drosophila simulans
RepID=B4R347_DROSI
Length = 552
Score = 60.5 bits (145), Expect = 6e-08
Identities = 54/169 (31%), Positives = 69/169 (40%), Gaps = 20/169 (11%)
Frame = +2
Query: 59 GYTPGREGQRTPGRAFDAAMTPTYAYSPAR--ARTPGGTAFSP-AYTGPGGFSPINATAS 229
G TP TP + TP Y P A TPGG +FSP A + G SP S
Sbjct: 162 GSTPSMTPPMTP---WVNCNTPRYFSPPGHVSAMTPGGPSFSPSAASDASGMSP-----S 213
Query: 230 FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAG 409
+SP A ++P P SP + P SP Y+ SP + P G +
Sbjct: 214 WSP------AHPGSSPSSPGPSMSP---YFPASPSVSPSYSPTSPNY---TASSPGGASP 261
Query: 410 AYAPASPAYMATSP-----------------GMGYSPSTPALAVSSPGY 505
Y+P+SP Y TSP GYSPS+ + +SPGY
Sbjct: 262 NYSPSSPNYSPTSPLYASPRYASTTPNFNPQSTGYSPSSSGYSPTSPGY 310
Score = 57.0 bits (136), Expect = 7e-07
Identities = 52/162 (32%), Positives = 71/162 (43%), Gaps = 4/162 (2%)
Frame = +2
Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAA--MTPTYAYSPARAR-TPGGTAFSPAYTGPGG 202
SP P GY+P + Q +P A + +P AYSP+ + +P ++SP T P
Sbjct: 304 SPTSP----GYSPTAQFQSSPSFAGSGSNIYSPGNAYSPSSSNYSPNSPSYSP--TSPS- 356
Query: 203 FSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGG 379
+SP + + S SP S + T TP TP SP SP Y+A SP++
Sbjct: 357 YSPSSPSYSPTSPCYSPTSPSYSPTSPNYTP-------VTPSYSPTSPNYSA-SPQYSPA 408
Query: 380 LGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
G Y+P SP Y SP SP +P SP Y
Sbjct: 409 SPAYSQTGV-KYSPTSPTYSPPSPSYDGSPGSPQYTPGSPQY 449
Score = 55.8 bits (133), Expect = 2e-06
Identities = 54/185 (29%), Positives = 75/185 (40%), Gaps = 18/185 (9%)
Frame = +2
Query: 5 AAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARART-----PGGT 169
A+ S + SP P G +P + +P YA SP A T P T
Sbjct: 236 ASPSVSPSYSPTSPNYTASSPGGASPNYSPSSPNYSPTSPLYA-SPRYASTTPNFNPQST 294
Query: 170 AFSPAYTGPGGFSP-INATASFSPIMSSADAAGRA-TPGRM-----------TPGRSPAG 310
+SP+ +G SP + TA F S A + +PG +P SP
Sbjct: 295 GYSPSSSGYSPTSPGYSPTAQFQSSPSFAGSGSNIYSPGNAYSPSSSNYSPNSPSYSPT- 353
Query: 311 RFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAV 490
+P SP+SP Y+ SP Y+P SP+Y TSP Y+P TP+ +
Sbjct: 354 --SPSYSPSSPSYSPTSP---------------CYSPTSPSYSPTSP--NYTPVTPSYSP 394
Query: 491 SSPGY 505
+SP Y
Sbjct: 395 TSPNY 399
[141][TOP]
>UniRef100_B4IK28 DNA-directed RNA polymerase n=1 Tax=Drosophila sechellia
RepID=B4IK28_DROSE
Length = 1887
Score = 60.5 bits (145), Expect = 6e-08
Identities = 54/169 (31%), Positives = 69/169 (40%), Gaps = 20/169 (11%)
Frame = +2
Query: 59 GYTPGREGQRTPGRAFDAAMTPTYAYSPAR--ARTPGGTAFSP-AYTGPGGFSPINATAS 229
G TP TP + TP Y P A TPGG +FSP A + G SP S
Sbjct: 1497 GSTPSMTPPMTP---WVNCNTPRYFSPPGHVSAMTPGGPSFSPSAASDASGMSP-----S 1548
Query: 230 FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAG 409
+SP A ++P P SP + P SP Y+ SP + P G +
Sbjct: 1549 WSP------AHPGSSPSSPGPSMSP---YFPASPSVSPSYSPTSPNY---TASSPGGASP 1596
Query: 410 AYAPASPAYMATSP-----------------GMGYSPSTPALAVSSPGY 505
Y+P+SP Y TSP GYSPS+ + +SPGY
Sbjct: 1597 NYSPSSPNYSPTSPLYASPRYASTTPNFNPQSTGYSPSSSGYSPTSPGY 1645
Score = 57.0 bits (136), Expect = 7e-07
Identities = 52/162 (32%), Positives = 71/162 (43%), Gaps = 4/162 (2%)
Frame = +2
Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAA--MTPTYAYSPARAR-TPGGTAFSPAYTGPGG 202
SP P GY+P + Q +P A + +P AYSP+ + +P ++SP T P
Sbjct: 1639 SPTSP----GYSPTAQFQSSPSFAGSGSNIYSPGNAYSPSSSNYSPNSPSYSP--TSPS- 1691
Query: 203 FSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGG 379
+SP + + S SP S + T TP TP SP SP Y+A SP++
Sbjct: 1692 YSPSSPSYSPTSPCYSPTSPSYSPTSPNYTP-------VTPSYSPTSPNYSA-SPQYSPA 1743
Query: 380 LGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
G Y+P SP Y SP SP +P SP Y
Sbjct: 1744 SPAYSQTGV-KYSPTSPTYSPPSPSYDGSPGSPQYTPGSPQY 1784
Score = 55.8 bits (133), Expect = 2e-06
Identities = 54/185 (29%), Positives = 75/185 (40%), Gaps = 18/185 (9%)
Frame = +2
Query: 5 AAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARART-----PGGT 169
A+ S + SP P G +P + +P YA SP A T P T
Sbjct: 1571 ASPSVSPSYSPTSPNYTASSPGGASPNYSPSSPNYSPTSPLYA-SPRYASTTPNFNPQST 1629
Query: 170 AFSPAYTGPGGFSP-INATASFSPIMSSADAAGRA-TPGRM-----------TPGRSPAG 310
+SP+ +G SP + TA F S A + +PG +P SP
Sbjct: 1630 GYSPSSSGYSPTSPGYSPTAQFQSSPSFAGSGSNIYSPGNAYSPSSSNYSPNSPSYSPT- 1688
Query: 311 RFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAV 490
+P SP+SP Y+ SP Y+P SP+Y TSP Y+P TP+ +
Sbjct: 1689 --SPSYSPSSPSYSPTSP---------------CYSPTSPSYSPTSP--NYTPVTPSYSP 1729
Query: 491 SSPGY 505
+SP Y
Sbjct: 1730 TSPNY 1734
[142][TOP]
>UniRef100_Q5ACI7 DNA-directed RNA polymerase n=1 Tax=Candida albicans
RepID=Q5ACI7_CANAL
Length = 1728
Score = 60.5 bits (145), Expect = 6e-08
Identities = 50/160 (31%), Positives = 76/160 (47%), Gaps = 3/160 (1%)
Frame = +2
Query: 35 PAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAY--TGPGGFS 208
P P + ++ G +PG +P Y YSP +P + SP+Y T P +S
Sbjct: 1515 PTSPAATSPFSYGYNSITSPGYT-----SPGYGYSPT---SPSYSPTSPSYAPTSPA-YS 1565
Query: 209 PINAT-ASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLG 385
P + + A SP S + T +P SP +P SP SP Y+ SP++
Sbjct: 1566 PTSPSYAPTSPAYSPTSPSYAPT----SPAYSPT---SPAYSPTSPSYSPTSPQY----- 1613
Query: 386 GGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
+ + +Y+P SP+Y TSP YSP++PA + +SP Y
Sbjct: 1614 ---SPTSPSYSPTSPSYSPTSP--SYSPTSPAYSPTSPSY 1648
Score = 57.0 bits (136), Expect = 7e-07
Identities = 47/153 (30%), Positives = 67/153 (43%), Gaps = 4/153 (2%)
Frame = +2
Query: 59 GYTPGREGQRTPGRAFD----AAMTPTYAYSPARARTPGGTAFSPAYTGPGGFSPINATA 226
G TP ++ + D A +P + G T++ T P SP
Sbjct: 1469 GATPYKDYENARDENIDIDAGAGFSPIHIAQMNEGNIGGLTSYGGQPTSPAATSP----- 1523
Query: 227 SFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGA 406
FS +S + G +PG G SP +P SP SP YA SP + + +
Sbjct: 1524 -FSYGYNSITSPGYTSPGY---GYSPT---SPSYSPTSPSYAPTSPAY--------SPTS 1568
Query: 407 GAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
+YAP SPAY TSP Y+P++PA + +SP Y
Sbjct: 1569 PSYAPTSPAYSPTSP--SYAPTSPAYSPTSPAY 1599
Score = 55.1 bits (131), Expect = 3e-06
Identities = 49/166 (29%), Positives = 71/166 (42%), Gaps = 8/166 (4%)
Frame = +2
Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY--T 190
SPA + Y P A+ +P+Y+ YSP +P + SP+Y T
Sbjct: 1575 SPAYSPTSPSYAPTSPAYSPTSPAYSPT-SPSYSPTSPQYSPT---SPSYSPTSPSYSPT 1630
Query: 191 GPGGFSPIN-ATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPR 367
P +SP + A + SP S + T + +P +P+ SP SP Y+ SP+
Sbjct: 1631 SPS-YSPTSPAYSPTSPSYSPTSPSYSPTSPQYSPTSPSYSPTSPQYSPTSPSYSPTSPQ 1689
Query: 368 FGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
Y+P SP Y TSP YSP++P + SPGY
Sbjct: 1690 ---------------YSPTSPQYSPTSP--QYSPTSPQYSPGSPGY 1718
[143][TOP]
>UniRef100_Q4UCP5 DNA-directed RNA polymerase n=1 Tax=Theileria annulata
RepID=Q4UCP5_THEAN
Length = 1678
Score = 60.1 bits (144), Expect = 8e-08
Identities = 45/134 (33%), Positives = 59/134 (44%), Gaps = 4/134 (2%)
Frame = +2
Query: 116 MTPTYAYSPARARTPGGTAFSPAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPG 295
M+PT SP A +P +SPAY+ SP + T++ SP A T
Sbjct: 1555 MSPTSPMSPTSAISP---VYSPAYSPTSPMSPTSPTSALSPTSPVYSPAYSPT------- 1604
Query: 296 RSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASP----AYMATSPGMGY 463
SP +P SP Y+ SP G YAP SP AY T+P GY
Sbjct: 1605 -SPTSAMSPTSPVYSPAYSPTSPNLG-------------YAPTSPVYSPAYSPTTPNYGY 1650
Query: 464 SPSTPALAVSSPGY 505
SP++P L+ +SP Y
Sbjct: 1651 SPTSP-LSPTSPAY 1663
Score = 57.4 bits (137), Expect = 5e-07
Identities = 49/160 (30%), Positives = 66/160 (41%), Gaps = 31/160 (19%)
Frame = +2
Query: 119 TPTYAYSPARARTPGGTAFSPAYT------------GP-------------GGFSPINAT 223
+P +PA +T AFSP YT GP G FSP + T
Sbjct: 1487 SPLSPSTPATKQTMSPMAFSPTYTSLMMSPVGGIGMGPSTPGLMVDTYALGGSFSPTSPT 1546
Query: 224 ASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASP--GYAAMSPRFGGGLGGGPA 397
+ SP + + + ++P SPA T MSP SP + SP + P
Sbjct: 1547 SPMSPTSPMSPTSPMSPTSAISPVYSPAYSPTSPMSPTSPTSALSPTSPVYSPAY--SPT 1604
Query: 398 GGAGAYAPA----SPAYMATSPGMGYSPSTPALAVSSPGY 505
A +P SPAY TSP +GY+P++P V SP Y
Sbjct: 1605 SPTSAMSPTSPVYSPAYSPTSPNLGYAPTSP---VYSPAY 1641
[144][TOP]
>UniRef100_A5E6J4 DNA-directed RNA polymerase n=1 Tax=Lodderomyces elongisporus
RepID=A5E6J4_LODEL
Length = 1745
Score = 60.1 bits (144), Expect = 8e-08
Identities = 49/152 (32%), Positives = 72/152 (47%), Gaps = 3/152 (1%)
Frame = +2
Query: 59 GYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAY--TGPGGFSPINATAS- 229
G TPG G +PG +P Y YSP +P + SP+Y T P +SP + + S
Sbjct: 1519 GTTPGYGGT-SPGYG---GTSPGYGYSPT---SPSYSPTSPSYSPTSPS-YSPTSPSYSP 1570
Query: 230 FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAG 409
SP S + T +P +P SP SP Y+ SP + + +
Sbjct: 1571 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY--------SPTSP 1622
Query: 410 AYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
+Y+P SP+Y TSP YSP++P+ + +SP Y
Sbjct: 1623 SYSPTSPSYSPTSPS--YSPTSPSYSPTSPSY 1652
Score = 58.5 bits (140), Expect = 2e-07
Identities = 51/161 (31%), Positives = 73/161 (45%), Gaps = 5/161 (3%)
Frame = +2
Query: 38 AMPESERGYTPGREGQRT-PGRAFDAAMTPTYAYSPARARTPGGTAFSPAY--TGPG-GF 205
AM ++ G GQ T PG T ++Y TPG SP Y T PG G+
Sbjct: 1491 AMSDNMNGGLTSYGGQPTSPGN------TSPFSYGT----TPGYGGTSPGYGGTSPGYGY 1540
Query: 206 SPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGL 382
SP + + S SP S + T +P +P SP SP Y+ SP +
Sbjct: 1541 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY---- 1596
Query: 383 GGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
+ + +Y+P SP+Y TSP YSP++P+ + +SP Y
Sbjct: 1597 ----SPTSPSYSPTSPSYSPTSPS--YSPTSPSYSPTSPSY 1631
[145][TOP]
>UniRef100_UPI000179348F PREDICTED: similar to DNA-directed RNA polymerase II subunit RPB1
(RNA polymerase II subunit B1) (DNA-directed RNA
polymerase III largest subunit) n=1 Tax=Acyrthosiphon
pisum RepID=UPI000179348F
Length = 1862
Score = 59.7 bits (143), Expect = 1e-07
Identities = 50/154 (32%), Positives = 67/154 (43%), Gaps = 3/154 (1%)
Frame = +2
Query: 53 ERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPG--GTAFSPAYTGPGGFSPINATA 226
E G TPG G G + + +P + S +PG G A SP P SP N
Sbjct: 1528 ETGMTPGGPGFSPAGSSEASGTSPFWMSSGGTPGSPGSPGMATSPYVPSPSSMSP-NYNY 1586
Query: 227 SFSPIMSSADAAGRATPGRMT-PGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGG 403
SP S + T T P S + TP+ S SP Y SP P+
Sbjct: 1587 PSSPQFGSLSPSMTPTNYSPTSPQYSATQQNTPKYSSMSPNY-NYSPTSPSYSPTSPSYS 1645
Query: 404 AGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
+Y+P SP+Y TSP YSP++P+ + +SP Y
Sbjct: 1646 HTSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1677
Score = 57.0 bits (136), Expect = 7e-07
Identities = 55/162 (33%), Positives = 69/162 (42%), Gaps = 15/162 (9%)
Frame = +2
Query: 65 TPGREGQRTPGRAFDAAMTPTY----AYSPARARTPGGTAFSPAYTGPGGFSPINATASF 232
TP TP +D TP Y + S TPGG FSPA G S + T+ F
Sbjct: 1501 TPSMSPAMTP---WDQTSTPMYQNNWSSSLETGMTPGGPGFSPA-----GSSEASGTSPF 1552
Query: 233 SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYA-AMSPRFGGGLGGGPAGGAG 409
MSS G +PG SP + P S SP Y SP+FG P+
Sbjct: 1553 W--MSSGGTPG--SPGSPGMATSP---YVPSPSSMSPNYNYPSSPQFGSL---SPSMTPT 1602
Query: 410 AYAPASPAYMAT----------SPGMGYSPSTPALAVSSPGY 505
Y+P SP Y AT SP YSP++P+ + +SP Y
Sbjct: 1603 NYSPTSPQYSATQQNTPKYSSMSPNYNYSPTSPSYSPTSPSY 1644
[146][TOP]
>UniRef100_UPI00003BD271 hypothetical protein DEHA0A14036g n=1 Tax=Debaryomyces hansenii
CBS767 RepID=UPI00003BD271
Length = 1749
Score = 59.7 bits (143), Expect = 1e-07
Identities = 51/166 (30%), Positives = 76/166 (45%), Gaps = 8/166 (4%)
Frame = +2
Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY--T 190
SP P S +P G +PG +PTY+ YSP +P + SP+Y T
Sbjct: 1529 SPTSPFSYGATSPSFGGVTSPGYG---GTSPTYSPTSPSYSPT---SPSYSPTSPSYSPT 1582
Query: 191 GPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPR 367
P +SP + + S SP S + T +P +P SP SP Y+ SP
Sbjct: 1583 SPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1641
Query: 368 FGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
+ + + +Y+P SP+Y TSP YSP++P+ + +SP Y
Sbjct: 1642 Y--------SPTSPSYSPTSPSYSPTSPS--YSPTSPSYSPTSPSY 1677
Score = 58.2 bits (139), Expect = 3e-07
Identities = 47/145 (32%), Positives = 61/145 (42%), Gaps = 3/145 (2%)
Frame = +2
Query: 80 GQRTPGRAFDAAMTP--TYAYSPARARTPGGTAFSPAYTGPGGFSPINATASFSPIMSSA 253
G T A D TP Y + + G FSP +T P +
Sbjct: 1471 GNETGEYADDGGATPYRDYEMQDDKIQFEEGAGFSPIHTAP-----------------VS 1513
Query: 254 DAAGRATPGRMTPGRSPAGRFTPRMSPASP-GYAAMSPRFGGGLGGGPAGGAGAYAPASP 430
D +G T S G +P SP SP Y A SP FGG G G + Y+P SP
Sbjct: 1514 DGSGALT--------SYGGATSP--SPTSPFSYGATSPSFGGVTSPGYGGTSPTYSPTSP 1563
Query: 431 AYMATSPGMGYSPSTPALAVSSPGY 505
+Y TSP YSP++P+ + +SP Y
Sbjct: 1564 SYSPTSP--SYSPTSPSYSPTSPSY 1586
[147][TOP]
>UniRef100_A8ITU3 Predicted protein (Fragment) n=1 Tax=Chlamydomonas reinhardtii
RepID=A8ITU3_CHLRE
Length = 1063
Score = 59.7 bits (143), Expect = 1e-07
Identities = 55/148 (37%), Positives = 65/148 (43%), Gaps = 3/148 (2%)
Frame = +2
Query: 71 GREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGFSPINATASFSPIMSS 250
G G P AF A A +PA TP A +PA TG GF A AS +
Sbjct: 833 GSSGGAAPTAAFGATGAAGAAPTPAFGVTPAFGAGAPAATG--GFGGFGAGAS----KPA 886
Query: 251 ADAAGRATPGRMTPGRSPAGRFTPRMSPASPGY---AAMSPRFGGGLGGGPAGGAGAYAP 421
A G A P T G +PA PA+ G+ AA +P FG G G PA GA +
Sbjct: 887 APTFGAAGP---TFGAAPA--------PAAGGFGAPAAPTPAFGSGGGAAPAFGASGFGA 935
Query: 422 ASPAYMATSPGMGYSPSTPALAVSSPGY 505
A PA A +PG G ST SSP +
Sbjct: 936 AQPA--APTPGFGAGASTGFGGTSSPAF 961
[148][TOP]
>UniRef100_Q9XZU9 DNA-directed RNA polymerase n=1 Tax=Drosophila subobscura
RepID=Q9XZU9_DROSU
Length = 1889
Score = 59.7 bits (143), Expect = 1e-07
Identities = 49/177 (27%), Positives = 71/177 (40%), Gaps = 10/177 (5%)
Frame = +2
Query: 5 AAASARIARS-PAMPESERGYTPGREGQRTPGRAFDAAM----TPTYAYSPARARTPGGT 169
AA S R A + P GY+P G + +P++A S + +PG
Sbjct: 1613 AAPSPRYASTTPNFNPQSTGYSPSASGYSPTSPVYSPTSNFPSSPSFAGSGSNMYSPGN- 1671
Query: 170 AFSPAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGY 349
A+SP+ T SP + + SP S + + T +P +P +PA+P Y
Sbjct: 1672 AYSPSSTNYSPNSP--SYSPTSPSYSPSSPSYSPTSPCYSPSSPSYSPTSPNYTPATPSY 1729
Query: 350 AAMSPRFGGGLGGGPAGGA-----GAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
+ SP + PA A Y+P SP Y SP SP +P SP Y
Sbjct: 1730 SPTSPNYSASPHYSPASPAYSQTGAKYSPTSPTYSPPSPSYDGSPGSPQYTPGSPQY 1786
Score = 57.8 bits (138), Expect = 4e-07
Identities = 52/157 (33%), Positives = 65/157 (41%), Gaps = 8/157 (5%)
Frame = +2
Query: 59 GYTPGREGQRTPGRAFDAAMTPTYAYSPAR--ARTPGGTAFSP-AYTGPGGFSPINATAS 229
G TP TP + TP Y P A TPGG +FSP A + G SP S
Sbjct: 1497 GSTPSMTPPMTP---WVNCNTPRYFSPPGHVSAMTPGGPSFSPSAASDASGMSP-----S 1548
Query: 230 FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAG 409
+SP A ++P P SP F P SP Y+ SP + P G +
Sbjct: 1549 WSP------AHPGSSPSSPAPSMSP---FYPASPSVSPSYSPTSPNY---TASSPGGASP 1596
Query: 410 AYAPASPAYMATS-----PGMGYSPSTPALAVSSPGY 505
Y+P+SP Y TS P Y+ +TP S GY
Sbjct: 1597 NYSPSSPNYSPTSPLYAAPSPRYASTTPNFNPQSTGY 1633
Score = 57.0 bits (136), Expect = 7e-07
Identities = 53/162 (32%), Positives = 77/162 (47%), Gaps = 4/162 (2%)
Frame = +2
Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-YSPARARTPGGTAFSPAYTGPGG-F 205
SP+ + Y+P + A TP+Y+ SP + +P + SPAY+ G +
Sbjct: 1698 SPSYSPTSPCYSPSSPSYSPTSPNYTPA-TPSYSPTSPNYSASPHYSPASPAYSQTGAKY 1756
Query: 206 SPINATASF-SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGL 382
SP + T S SP + + + TPG +P SPA +P+ SP SP Y+ SP+
Sbjct: 1757 SPTSPTYSPPSPSYDGSPGSPQYTPG--SPQYSPA---SPKYSPTSPLYSPSSPQHSPSN 1811
Query: 383 GGGPAGGAGAYAPASPAYMATSPGMG-YSPSTPALAVSSPGY 505
P G Y+ SP Y SP M YSPS+ + +SP Y
Sbjct: 1812 QYSPTG--STYSATSPRY---SPNMSIYSPSSTKYSPTSPTY 1848
[149][TOP]
>UniRef100_Q9XZS2 DNA-directed RNA polymerase n=1 Tax=Drosophila madeirensis
RepID=Q9XZS2_DROMD
Length = 1889
Score = 59.7 bits (143), Expect = 1e-07
Identities = 49/177 (27%), Positives = 71/177 (40%), Gaps = 10/177 (5%)
Frame = +2
Query: 5 AAASARIARS-PAMPESERGYTPGREGQRTPGRAFDAAM----TPTYAYSPARARTPGGT 169
AA S R A + P GY+P G + +P++A S + +PG
Sbjct: 1613 AAPSPRYASTTPNFNPQSTGYSPSASGYSPTSPVYSPTSNFPSSPSFAGSGSNMYSPGN- 1671
Query: 170 AFSPAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGY 349
A+SP+ T SP + + SP S + + T +P +P +PA+P Y
Sbjct: 1672 AYSPSSTNYSPNSP--SYSPTSPSYSPSSPSYSPTSPCYSPSSPSYSPTSPNYTPATPSY 1729
Query: 350 AAMSPRFGGGLGGGPAGGA-----GAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
+ SP + PA A Y+P SP Y SP SP +P SP Y
Sbjct: 1730 SPTSPNYSASPHYSPASPAYSQTGAKYSPTSPTYSPPSPSYDGSPGSPQYTPGSPQY 1786
Score = 57.8 bits (138), Expect = 4e-07
Identities = 52/157 (33%), Positives = 65/157 (41%), Gaps = 8/157 (5%)
Frame = +2
Query: 59 GYTPGREGQRTPGRAFDAAMTPTYAYSPAR--ARTPGGTAFSP-AYTGPGGFSPINATAS 229
G TP TP + TP Y P A TPGG +FSP A + G SP S
Sbjct: 1497 GSTPSMTPPMTP---WVNCNTPRYFSPPGHVSAMTPGGPSFSPSAASDASGMSP-----S 1548
Query: 230 FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAG 409
+SP A ++P P SP F P SP Y+ SP + P G +
Sbjct: 1549 WSP------AHPGSSPSSPAPSMSP---FYPASPSVSPSYSPTSPNY---TASSPGGASP 1596
Query: 410 AYAPASPAYMATS-----PGMGYSPSTPALAVSSPGY 505
Y+P+SP Y TS P Y+ +TP S GY
Sbjct: 1597 NYSPSSPNYSPTSPLYAAPSPRYASTTPNFNPQSTGY 1633
Score = 57.0 bits (136), Expect = 7e-07
Identities = 53/162 (32%), Positives = 77/162 (47%), Gaps = 4/162 (2%)
Frame = +2
Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-YSPARARTPGGTAFSPAYTGPGG-F 205
SP+ + Y+P + A TP+Y+ SP + +P + SPAY+ G +
Sbjct: 1698 SPSYSPTSPCYSPSSPSYSPTSPNYTPA-TPSYSPTSPNYSASPHYSPASPAYSQTGAKY 1756
Query: 206 SPINATASF-SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGL 382
SP + T S SP + + + TPG +P SPA +P+ SP SP Y+ SP+
Sbjct: 1757 SPTSPTYSPPSPSYDGSPGSPQYTPG--SPQYSPA---SPKYSPTSPLYSPSSPQHSPSN 1811
Query: 383 GGGPAGGAGAYAPASPAYMATSPGMG-YSPSTPALAVSSPGY 505
P G Y+ SP Y SP M YSPS+ + +SP Y
Sbjct: 1812 QYSPTG--STYSATSPRY---SPNMSIYSPSSTKYSPTSPTY 1848
[150][TOP]
>UniRef100_Q9XZS1 DNA-directed RNA polymerase n=1 Tax=Drosophila guanche
RepID=Q9XZS1_DROGU
Length = 1889
Score = 59.7 bits (143), Expect = 1e-07
Identities = 53/185 (28%), Positives = 75/185 (40%), Gaps = 18/185 (9%)
Frame = +2
Query: 5 AAASARIARS-PAMPESERGYTPGREGQRTPGRAFDAAM----TPTYA------YSPARA 151
AA S R A + P GY+P G + +P++A YSP A
Sbjct: 1613 AAPSPRYASTTPNFNPQSTGYSPSASGYSPTSPVYSPTSNFPSSPSFAGSGSNMYSPGNA 1672
Query: 152 RTPGGTAFSPAYTGPGGFSPINATASFSPIMSSADAAGRATP--GRMTPGRSPAGRFTPR 325
+P T +SP +SP + S+SP S+ + +P +P SP +P
Sbjct: 1673 YSPSSTNYSP---NSPSYSP--TSPSYSP---SSPSYSPTSPCYSPTSPSYSPT---SPN 1721
Query: 326 MSPASPGYAAMSPRFGGGLGGGPAGGA-----GAYAPASPAYMATSPGMGYSPSTPALAV 490
+PA+P Y+ SP + PA A Y+P SP Y SP SP +P
Sbjct: 1722 YTPATPSYSPTSPNYSASPHYSPASPAYSQTGAKYSPTSPTYSPPSPSYDGSPGSPQYTP 1781
Query: 491 SSPGY 505
SP Y
Sbjct: 1782 GSPQY 1786
Score = 56.6 bits (135), Expect = 9e-07
Identities = 51/157 (32%), Positives = 65/157 (41%), Gaps = 8/157 (5%)
Frame = +2
Query: 59 GYTPGREGQRTPGRAFDAAMTPTYAYSPAR--ARTPGGTAFSP-AYTGPGGFSPINATAS 229
G TP TP + TP Y P A TPGG +FSP A + G SP S
Sbjct: 1497 GSTPSMTPPMTP---WVNCNTPRYFSPPGHVSAMTPGGPSFSPSAASDASGMSP-----S 1548
Query: 230 FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAG 409
+SP A ++P P SP + P SP Y+ SP + P G +
Sbjct: 1549 WSP------AHPGSSPSSPAPSMSP---YYPASPSVSPSYSPTSPNY---TASSPGGASP 1596
Query: 410 AYAPASPAYMATS-----PGMGYSPSTPALAVSSPGY 505
Y+P+SP Y TS P Y+ +TP S GY
Sbjct: 1597 NYSPSSPNYSPTSPLYAAPSPRYASTTPNFNPQSTGY 1633
Score = 56.2 bits (134), Expect = 1e-06
Identities = 53/162 (32%), Positives = 75/162 (46%), Gaps = 4/162 (2%)
Frame = +2
Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-YSPARARTPGGTAFSPAYTGPGG-F 205
SP+ + YTP TP+Y+ SP + +P + SPAY+ G +
Sbjct: 1712 SPSYSPTSPNYTPA---------------TPSYSPTSPNYSASPHYSPASPAYSQTGAKY 1756
Query: 206 SPINATASF-SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGL 382
SP + T S SP + + + TPG +P SPA +P+ SP SP Y+ SP+
Sbjct: 1757 SPTSPTYSPPSPSYDGSPGSPQYTPG--SPQYSPA---SPKYSPTSPLYSPSSPQHSPSN 1811
Query: 383 GGGPAGGAGAYAPASPAYMATSPGMG-YSPSTPALAVSSPGY 505
P G Y+ SP Y SP M YSPS+ + +SP Y
Sbjct: 1812 QYSPTG--STYSATSPRY---SPNMSIYSPSSTKYSPTSPTY 1848
[151][TOP]
>UniRef100_B5RSM9 DNA-directed RNA polymerase n=1 Tax=Debaryomyces hansenii
RepID=B5RSM9_DEBHA
Length = 1749
Score = 59.7 bits (143), Expect = 1e-07
Identities = 51/166 (30%), Positives = 76/166 (45%), Gaps = 8/166 (4%)
Frame = +2
Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY--T 190
SP P S +P G +PG +PTY+ YSP +P + SP+Y T
Sbjct: 1529 SPTSPFSYGATSPSFGGVTSPGYG---GTSPTYSPTSPSYSPT---SPSYSPTSPSYSPT 1582
Query: 191 GPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPR 367
P +SP + + S SP S + T +P +P SP SP Y+ SP
Sbjct: 1583 SPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1641
Query: 368 FGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
+ + + +Y+P SP+Y TSP YSP++P+ + +SP Y
Sbjct: 1642 Y--------SPTSPSYSPTSPSYSPTSPS--YSPTSPSYSPTSPSY 1677
Score = 58.2 bits (139), Expect = 3e-07
Identities = 47/145 (32%), Positives = 61/145 (42%), Gaps = 3/145 (2%)
Frame = +2
Query: 80 GQRTPGRAFDAAMTP--TYAYSPARARTPGGTAFSPAYTGPGGFSPINATASFSPIMSSA 253
G T A D TP Y + + G FSP +T P +
Sbjct: 1471 GNETGEYADDGGATPYRDYEMQDDKIQFEEGAGFSPIHTAP-----------------VS 1513
Query: 254 DAAGRATPGRMTPGRSPAGRFTPRMSPASP-GYAAMSPRFGGGLGGGPAGGAGAYAPASP 430
D +G T S G +P SP SP Y A SP FGG G G + Y+P SP
Sbjct: 1514 DGSGALT--------SYGGATSP--SPTSPFSYGATSPSFGGVTSPGYGGTSPTYSPTSP 1563
Query: 431 AYMATSPGMGYSPSTPALAVSSPGY 505
+Y TSP YSP++P+ + +SP Y
Sbjct: 1564 SYSPTSP--SYSPTSPSYSPTSPSY 1586
[152][TOP]
>UniRef100_Q16988 Fibroin-4 (Fragment) n=1 Tax=Araneus diadematus RepID=Q16988_ARADI
Length = 410
Score = 59.3 bits (142), Expect = 1e-07
Identities = 54/180 (30%), Positives = 67/180 (37%), Gaps = 15/180 (8%)
Frame = +2
Query: 11 ASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTA------ 172
ASA A + A GY PG +G PG + A + A A PGG
Sbjct: 118 ASAAAAAAAAAASGPGGYGPGSQGPSGPGAYGPGGPGSSAAAAAAAASGPGGYGPGSQGP 177
Query: 173 FSPAYTGPGG---FSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASP 343
P GPGG + A A P + G + PG PG S + + + P
Sbjct: 178 SGPGVYGPGGPGSSAAAAAAAGSGPGGYGPENQGPSGPGGYGPGGSGSSAAAAAAAASGP 237
Query: 344 G------YAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
G P GG G G GG+G A A+ A A S GY P + S PGY
Sbjct: 238 GGYGPGSQGPSGPGGSGGYGPGSQGGSGPGASAAAAAAAASGPGGYGPGSQ--GPSGPGY 295
Score = 53.5 bits (127), Expect = 8e-06
Identities = 49/170 (28%), Positives = 69/170 (40%), Gaps = 10/170 (5%)
Frame = +2
Query: 26 ARSPAMPESERGYTPGREGQRTPG--------RAFDAAMTPTYAYSPARARTPGGTAFSP 181
++ P+ P GY PG +G PG A AA + Y P G A+ P
Sbjct: 91 SQGPSGPGGSGGYGPGSQGASGPGGPGASAAAAAAAAAASGPGGYGPGSQGPSGPGAYGP 150
Query: 182 AYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMS 361
GPG + A A+ P + G + PG PG + + + PG
Sbjct: 151 G--GPGSSAAAAAAAASGPGGYGPGSQGPSGPGVYGPGGPGSSAAAAAAAGSGPGGYGPE 208
Query: 362 PRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPST--PALAVSSPGY 505
+ G GG GG+G+ A A+ A A+ PG GY P + P+ S GY
Sbjct: 209 NQGPSGPGGYGPGGSGSSAAAAAA-AASGPG-GYGPGSQGPSGPGGSGGY 256
[153][TOP]
>UniRef100_O94231 RNA polymerase II largest subunit (Fragment) n=1 Tax=Kluyveromyces
lactis RepID=O94231_KLULA
Length = 414
Score = 59.3 bits (142), Expect = 1e-07
Identities = 51/165 (30%), Positives = 79/165 (47%), Gaps = 11/165 (6%)
Frame = +2
Query: 44 PESERGYTPGREGQRTP-----GRA-FDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGF 205
PE + T G+EG TP G A + + +SP + G A + +T GG
Sbjct: 150 PEHKEVKTEGQEGGATPYSNESGLANAEINVKDELMFSPL-VESGGADALAGGFTAYGGA 208
Query: 206 SPINATASFSPIMSSADAAGR---ATPG--RMTPGRSPAGRFTPRMSPASPGYAAMSPRF 370
+AT+ FS + + G ++PG +PG SP +P SP SP Y+ SP +
Sbjct: 209 DYGSATSPFSGYGNGPTSPGFGEVSSPGFSPTSPGYSPT---SPSYSPTSPSYSPTSPSY 265
Query: 371 GGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
+ + +Y+P SP+Y TSP YSP++P+ + +SP Y
Sbjct: 266 --------SPTSPSYSPTSPSYSPTSPS--YSPTSPSYSPTSPSY 300
Score = 56.2 bits (134), Expect = 1e-06
Identities = 47/166 (28%), Positives = 75/166 (45%), Gaps = 8/166 (4%)
Frame = +2
Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY--T 190
SP + GY+P ++ +P+Y+ YSP +P + SP+Y T
Sbjct: 234 SPGFSPTSPGYSPTSPSYSPTSPSYSPT-SPSYSPTSPSYSPT---SPSYSPTSPSYSPT 289
Query: 191 GPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPR 367
P +SP + + S SP S + T +P +P SP SP Y+ SP
Sbjct: 290 SPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 348
Query: 368 FGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
+ + + +Y+P SP+Y TSP YSP++P+ + +SP Y
Sbjct: 349 Y--------SPTSPSYSPTSPSYSPTSPS--YSPTSPSYSPTSPSY 384
Score = 55.5 bits (132), Expect = 2e-06
Identities = 49/167 (29%), Positives = 77/167 (46%), Gaps = 9/167 (5%)
Frame = +2
Query: 32 SPAMPE-SERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY-- 187
SP E S G++P G ++ +P+Y+ YSP +P + SP+Y
Sbjct: 226 SPGFGEVSSPGFSPTSPGYSPTSPSYSPT-SPSYSPTSPSYSPT---SPSYSPTSPSYSP 281
Query: 188 TGPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSP 364
T P +SP + + S SP S + T +P +P SP SP Y+ SP
Sbjct: 282 TSPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 340
Query: 365 RFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
+ + + +Y+P SP+Y TSP YSP++P+ + +SP Y
Sbjct: 341 SY--------SPTSPSYSPTSPSYSPTSPS--YSPTSPSYSPTSPSY 377
Score = 54.3 bits (129), Expect = 4e-06
Identities = 41/140 (29%), Positives = 63/140 (45%), Gaps = 3/140 (2%)
Frame = +2
Query: 95 GRAFDAAMTPTYAYSPARARTPGGTAFSPAY--TGPGGFSPINATAS-FSPIMSSADAAG 265
G + +A +P Y G SP + T PG +SP + + S SP S +
Sbjct: 207 GADYGSATSPFSGYGNGPTSPGFGEVSSPGFSPTSPG-YSPTSPSYSPTSPSYSPTSPSY 265
Query: 266 RATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMAT 445
T +P +P SP SP Y+ SP + + + +Y+P SP+Y T
Sbjct: 266 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPT 317
Query: 446 SPGMGYSPSTPALAVSSPGY 505
SP YSP++P+ + +SP Y
Sbjct: 318 SPS--YSPTSPSYSPTSPSY 335
Score = 53.9 bits (128), Expect = 6e-06
Identities = 45/145 (31%), Positives = 69/145 (47%), Gaps = 3/145 (2%)
Frame = +2
Query: 80 GQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAY--TGPGGFSPINATAS-FSPIMSS 250
G +PG F +P +SP +PG + SP+Y T P +SP + + S SP S
Sbjct: 223 GPTSPG--FGEVSSP--GFSPT---SPGYSPTSPSYSPTSPS-YSPTSPSYSPTSPSYSP 274
Query: 251 ADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASP 430
+ T +P +P SP SP Y+ SP + + + +Y+P SP
Sbjct: 275 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSP 326
Query: 431 AYMATSPGMGYSPSTPALAVSSPGY 505
+Y TSP YSP++P+ + +SP Y
Sbjct: 327 SYSPTSPS--YSPTSPSYSPTSPSY 349
[154][TOP]
>UniRef100_Q692F8 Major ampullate spidroin 2 (Fragment) n=1 Tax=Nephila clavipes
RepID=Q692F8_NEPCL
Length = 296
Score = 58.9 bits (141), Expect = 2e-07
Identities = 52/176 (29%), Positives = 71/176 (40%), Gaps = 28/176 (15%)
Frame = +2
Query: 59 GYTPGREGQRTPGRAFDAAMTPTY-----AYSPARARTPGGTAFSPAYTGPGGFSPINAT 223
GY PG++G G A AA Y P + + PGG + P GPGG+ P +A+
Sbjct: 3 GYGPGQQGPSGAGSAAAAAAAGPGQQGLGGYGPGQ-QGPGG--YGPGQQGPGGYGPGSAS 59
Query: 224 AS-------------FSP---------IMSSADAAGRATPGRMTPGRSPAGRFTP-RMSP 334
A+ + P S+A AA A PG PG+ G + P + P
Sbjct: 60 AAAAAAGPGQQGPGGYGPGQQGPSGPGSASAAAAAAAAGPGGYGPGQQGPGGYAPGQQGP 119
Query: 335 ASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPG 502
+ PG AA + G GG G P A A++ GY P+ A PG
Sbjct: 120 SGPGSAAAAAAAAAGPGGYGPAQQGPSGPGIAASAASAGPGGYGPAQQGPAGYGPG 175
[155][TOP]
>UniRef100_Q4N0F9 DNA-directed RNA polymerase n=1 Tax=Theileria parva
RepID=Q4N0F9_THEPA
Length = 1681
Score = 58.5 bits (140), Expect = 2e-07
Identities = 49/136 (36%), Positives = 62/136 (45%), Gaps = 6/136 (4%)
Frame = +2
Query: 116 MTPTYAYSPARARTPGGTAFSPAY--TGP-GGFSPINATASFSPIMSSADAAGRATPGRM 286
M+PT SP + +SPAY T P SP NA + SP+ S A +P
Sbjct: 1555 MSPTSPMSPMSPTSAMSPVYSPAYSPTSPMSPTSPANALSPTSPVYSPA-----YSPTSP 1609
Query: 287 TPGRSPAGR-FTPRMSPASP--GYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGM 457
T SP ++P SP SP GYA SP + SPAY TSP
Sbjct: 1610 TSAMSPTSPVYSPAYSPTSPNLGYAPTSPVY------------------SPAYSPTSPNY 1651
Query: 458 GYSPSTPALAVSSPGY 505
GYSP++P L+ +SP Y
Sbjct: 1652 GYSPTSP-LSPTSPAY 1666
Score = 56.6 bits (135), Expect = 9e-07
Identities = 54/163 (33%), Positives = 67/163 (41%), Gaps = 34/163 (20%)
Frame = +2
Query: 119 TPTYAYSPARARTPGGTAFSPAYT------------GP-------------GGFSPINAT 223
+P +PA +T AFSP YT GP G FSP + T
Sbjct: 1487 SPLSPSTPATKQTMSPMAFSPTYTSLMMSPVGGIGMGPSTPGLMVDTYALGGSFSPTSPT 1546
Query: 224 ASFSPI--MSSADAAGRATP-GRMTPGRSPAGRFTPRMSPASPGYAAM--SPRFGGGLGG 388
+ SP MS +P M+P SPA T MSP SP A SP +
Sbjct: 1547 SPMSPTSPMSPTSPMSPMSPTSAMSPVYSPAYSPTSPMSPTSPANALSPTSPVYSPAYS- 1605
Query: 389 GPAGGAGAYAPASP----AYMATSPGMGYSPSTPALAVSSPGY 505
P A +P SP AY TSP +GY+P++P V SP Y
Sbjct: 1606 -PTSPTSAMSPTSPVYSPAYSPTSPNLGYAPTSP---VYSPAY 1644
[156][TOP]
>UniRef100_UPI000179338A PREDICTED: similar to DNA-directed RNA polymerase II subunit RPB1
(RNA polymerase II subunit B1) (DNA-directed RNA
polymerase III largest subunit) n=1 Tax=Acyrthosiphon
pisum RepID=UPI000179338A
Length = 1862
Score = 58.2 bits (139), Expect = 3e-07
Identities = 54/170 (31%), Positives = 77/170 (45%), Gaps = 23/170 (13%)
Frame = +2
Query: 65 TPGREGQRTPGRAFDAAMTPTYAYSPARA----RTPGGTAFSPAYTGPG-GFSPINATAS 229
TP TP +D TP Y S + + TPGG FSPA + G SP T+
Sbjct: 1501 TPSMSPAMTP---WDQTSTPVYQNSWSSSLEAGMTPGGPGFSPAGSSEASGTSPFWMTSG 1557
Query: 230 FSPIMSSADAAGRAT------PGRMTPG----RSPA-GRFTPRMSPASPGYAAMSPRFGG 376
+P S + G AT P M+P SP G +P M+P + Y+ SP++
Sbjct: 1558 GTP--GSPGSPGMATSPYVPSPNSMSPNYNYPSSPQFGSMSPSMTPTN--YSPTSPQYSA 1613
Query: 377 GLGGGPAGGAGA----YAPASPAYMATSPG---MGYSPSTPALAVSSPGY 505
P + + Y+P SP+Y TSP YSP++P+ + +SP Y
Sbjct: 1614 TQQNTPKYSSMSPNYNYSPTSPSYSPTSPSYSHTSYSPTSPSYSPTSPSY 1663
Score = 57.0 bits (136), Expect = 7e-07
Identities = 50/163 (30%), Positives = 70/163 (42%), Gaps = 12/163 (7%)
Frame = +2
Query: 53 ERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPG--GTAFSPAYTGPGGFSPINATA 226
E G TPG G G + + +P + S +PG G A SP P SP N
Sbjct: 1528 EAGMTPGGPGFSPAGSSEASGTSPFWMTSGGTPGSPGSPGMATSPYVPSPNSMSP-NYNY 1586
Query: 227 SFSPIMSSADAAGRATPGRMT-PGRSPAGRFTPRMS---------PASPGYAAMSPRFGG 376
SP S + T T P S + TP+ S P SP Y+ SP +
Sbjct: 1587 PSSPQFGSMSPSMTPTNYSPTSPQYSATQQNTPKYSSMSPNYNYSPTSPSYSPTSPSYSH 1646
Query: 377 GLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
+ + +Y+P SP+Y TSP YSP++P+ + +SP Y
Sbjct: 1647 T---SYSPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1684
[157][TOP]
>UniRef100_Q692F7 Major ampullate spidroin 2 (Fragment) n=1 Tax=Nephila clavipes
RepID=Q692F7_NEPCL
Length = 236
Score = 58.2 bits (139), Expect = 3e-07
Identities = 53/148 (35%), Positives = 67/148 (45%), Gaps = 2/148 (1%)
Frame = +2
Query: 59 GYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGFSPINATASFSP 238
GY PG++G G A AA A P + + PGG + P GPGG+ P S P
Sbjct: 12 GYGPGQQGPSGSGSAAAAA-----AAGPGQ-QGPGG--YGPGQQGPGGYGPGQQGPS-GP 62
Query: 239 IMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPA-GGAGAY 415
++A AA A PG G PA + P+ PG AA + G G G GPA G Y
Sbjct: 63 GSAAAAAAAAAGPG----GYGPA-----QQGPSGPGIAASAASAGPG-GYGPAQQGPAGY 112
Query: 416 APASPAYMATSPG-MGYSPSTPALAVSS 496
P S + G GY P + A A +S
Sbjct: 113 GPGSAVAASAGAGSAGYGPGSQASAAAS 140
[158][TOP]
>UniRef100_B3NUC1 DNA-directed RNA polymerase n=1 Tax=Drosophila erecta
RepID=B3NUC1_DROER
Length = 1889
Score = 58.2 bits (139), Expect = 3e-07
Identities = 52/185 (28%), Positives = 76/185 (41%), Gaps = 18/185 (9%)
Frame = +2
Query: 5 AAASARIARS-PAMPESERGYTPGREGQRTPGRAFDAA----MTPTYA------YSPARA 151
A+AS R A + P GY+P G + +P++A YSPA A
Sbjct: 1613 ASASPRYASTTPNFNPQSTGYSPSSSGYSPTSPVYSPTPHFQSSPSFAGSGSNIYSPANA 1672
Query: 152 RTPGGTAFSPAYTGPGGFSPINATASFSPIMSSADAAGRATP--GRMTPGRSPAGRFTPR 325
+P +SP +SP + S+SP S+ + +P +P SP +P
Sbjct: 1673 YSPSSANYSP---NSPSYSP--TSPSYSP---SSPSYSPTSPCYSPTSPSYSPT---SPN 1721
Query: 326 MSPASPGYAAMSPRFGGGLGGGPAGGAGA-----YAPASPAYMATSPGMGYSPSTPALAV 490
+P +P Y+ SP + PA A + Y+P SP Y SP SP +P
Sbjct: 1722 YTPVTPSYSPTSPNYSASPHYSPASPAYSQTGVKYSPTSPTYSPPSPSYDGSPGSPQYTP 1781
Query: 491 SSPGY 505
SP Y
Sbjct: 1782 GSPQY 1786
Score = 56.6 bits (135), Expect = 9e-07
Identities = 49/152 (32%), Positives = 67/152 (44%), Gaps = 3/152 (1%)
Frame = +2
Query: 59 GYTPGREGQRTPGRAFDAAMTPTYAYSPAR--ARTPGGTAFSP-AYTGPGGFSPINATAS 229
G TP TP + TP Y P A TPGG +FSP A + G SP S
Sbjct: 1497 GSTPSMTPPMTP---WANCNTPRYFSPPGHVSAMTPGGPSFSPSAASDASGMSP-----S 1548
Query: 230 FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAG 409
+SP A ++P P SP + P SP Y+ SP + P G +
Sbjct: 1549 WSP------AHPGSSPSSPGPSMSP---YFPASPSVSPSYSPTSPNY---TASSPGGASP 1596
Query: 410 AYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
Y+P+SP Y TSP Y+ ++P A ++P +
Sbjct: 1597 NYSPSSPNYSPTSP--LYASASPRYASTTPNF 1626
[159][TOP]
>UniRef100_C5E245 DNA-directed RNA polymerase n=1 Tax=Lachancea thermotolerans CBS 6340
RepID=C5E245_LACTC
Length = 1740
Score = 58.2 bits (139), Expect = 3e-07
Identities = 51/164 (31%), Positives = 76/164 (46%), Gaps = 4/164 (2%)
Frame = +2
Query: 26 ARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTY-AYSPARARTPGGTAFSPAY--TGP 196
A SP + +PG G +PG +PT AYSP +P + SP+Y T P
Sbjct: 1520 ASSPFSGYGDAPTSPGFGGVASPG------FSPTSPAYSPT---SPSYSPTSPSYSPTSP 1570
Query: 197 GGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFG 373
+SP + + S SP S + T +P +P SP SP Y+ SP +
Sbjct: 1571 S-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY- 1628
Query: 374 GGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
+ + +Y+P SP+Y TSP YSP++P+ + +SP Y
Sbjct: 1629 -------SPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1663
Score = 55.1 bits (131), Expect = 3e-06
Identities = 47/166 (28%), Positives = 75/166 (45%), Gaps = 8/166 (4%)
Frame = +2
Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY--T 190
SPA + Y+P ++ +P+Y+ YSP +P + SP+Y T
Sbjct: 1548 SPAYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPSYSPT---SPSYSPTSPSYSPT 1603
Query: 191 GPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPR 367
P +SP + + S SP S + T +P +P SP SP Y+ SP
Sbjct: 1604 SPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1662
Query: 368 FGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
+ + + +Y+P SP+Y TSP YSP++P+ + +SP Y
Sbjct: 1663 Y--------SPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1698
Score = 53.5 bits (127), Expect = 8e-06
Identities = 37/112 (33%), Positives = 56/112 (50%)
Frame = +2
Query: 170 AFSPAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGY 349
A S +T GG A++ FS + + G G +PG SP +P SP SP Y
Sbjct: 1504 AMSGGFTAYGGADYGGASSPFSGYGDAPTSPGFG--GVASPGFSPT---SPAYSPTSPSY 1558
Query: 350 AAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
+ SP + + + +Y+P SP+Y TSP YSP++P+ + +SP Y
Sbjct: 1559 SPTSPSY--------SPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1600
Score = 53.5 bits (127), Expect = 8e-06
Identities = 46/166 (27%), Positives = 74/166 (44%), Gaps = 8/166 (4%)
Frame = +2
Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY--T 190
SP+ + Y+P ++ +P+Y+ YSP +P + SP+Y T
Sbjct: 1569 SPSYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPSYSPT---SPSYSPTSPSYSPT 1624
Query: 191 GPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPR 367
P +SP + + S SP S + T +P +P SP SP Y+ SP
Sbjct: 1625 SPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1683
Query: 368 FGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
+ + + +Y+P SP+Y TSP YSP++P+ + SP Y
Sbjct: 1684 Y--------SPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPGSPSY 1719
[160][TOP]
>UniRef100_C4YN85 DNA-directed RNA polymerase n=1 Tax=Candida albicans
RepID=C4YN85_CANAL
Length = 1742
Score = 58.2 bits (139), Expect = 3e-07
Identities = 40/119 (33%), Positives = 56/119 (47%), Gaps = 9/119 (7%)
Frame = +2
Query: 176 SPAYTGPG-GFSPINAT--------ASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRM 328
SP YT PG G+SP + + A SP S + T +P +P
Sbjct: 1533 SPGYTSPGYGYSPTSPSYSPTSPSYAPTSPAYSPTSPSYAPTSPAYSPTSPSYAPTSPAY 1592
Query: 329 SPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
SP SP YA SP + + + AY+P SP+Y TSP YSP++P+ + +SP Y
Sbjct: 1593 SPTSPSYAPTSPAY--------SPTSPAYSPTSPSYSPTSP--QYSPTSPSYSPTSPSY 1641
Score = 55.1 bits (131), Expect = 3e-06
Identities = 49/166 (29%), Positives = 71/166 (42%), Gaps = 8/166 (4%)
Frame = +2
Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY--T 190
SPA + Y P A+ +P+Y+ YSP +P + SP+Y T
Sbjct: 1589 SPAYSPTSPSYAPTSPAYSPTSPAYSPT-SPSYSPTSPQYSPT---SPSYSPTSPSYSPT 1644
Query: 191 GPGGFSPIN-ATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPR 367
P +SP + A + SP S + T + +P +P+ SP SP Y+ SP+
Sbjct: 1645 SPS-YSPTSPAYSPTSPSYSPTSPSYSPTSPQYSPTSPSYSPTSPQYSPTSPSYSPTSPQ 1703
Query: 368 FGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
Y+P SP Y TSP YSP++P + SPGY
Sbjct: 1704 ---------------YSPTSPQYSPTSP--QYSPTSPQYSPGSPGY 1732
[161][TOP]
>UniRef100_B6JYP8 DNA-directed RNA polymerase n=1 Tax=Schizosaccharomyces japonicus
yFS275 RepID=B6JYP8_SCHJY
Length = 1748
Score = 58.2 bits (139), Expect = 3e-07
Identities = 52/173 (30%), Positives = 81/173 (46%), Gaps = 5/173 (2%)
Frame = +2
Query: 2 DAAASARIARSPAMPESERGY--TPGREGQRTPG--RAFDAAMTPTYAYSPARARTPGGT 169
DAA S I S + + G +P R+PG F A +P ++ S + + +P
Sbjct: 1502 DAAFSPLIQTSQDTHDDDYGMMASPYGADARSPGYMSPFSGASSPGFSPS-SPSYSPSSP 1560
Query: 170 AFSPAYTGPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPG 346
A+SP T P +SP + + S SP S + T +P +P SP SP
Sbjct: 1561 AYSP--TSPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1617
Query: 347 YAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
Y+ SP + + + +Y+P SP+Y TSP YSP++P+ + +SP Y
Sbjct: 1618 YSPTSPSY--------SPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1660
Score = 56.6 bits (135), Expect = 9e-07
Identities = 48/168 (28%), Positives = 75/168 (44%), Gaps = 8/168 (4%)
Frame = +2
Query: 26 ARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY- 187
A SP S Y+P ++ +P+Y+ YSP +P + SP+Y
Sbjct: 1543 ASSPGFSPSSPSYSPSSPAYSPTSPSYSPT-SPSYSPTSPSYSPT---SPSYSPTSPSYS 1598
Query: 188 -TGPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMS 361
T P +SP + + S SP S + T +P +P SP SP Y+ S
Sbjct: 1599 PTSPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1657
Query: 362 PRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
P + + + +Y+P SP+Y TSP YSP++P+ + +SP Y
Sbjct: 1658 PSYSP-TSPSYSPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1702
Score = 56.2 bits (134), Expect = 1e-06
Identities = 52/168 (30%), Positives = 77/168 (45%), Gaps = 8/168 (4%)
Frame = +2
Query: 26 ARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTY-----AYSPARARTPGGTAFSPAY- 187
ARSP GY G +PG + +P+Y AYSP +P + SP+Y
Sbjct: 1531 ARSP-------GYMSPFSGASSPGFS---PSSPSYSPSSPAYSPT---SPSYSPTSPSYS 1577
Query: 188 -TGPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMS 361
T P +SP + + S SP S + T +P +P SP SP Y+ S
Sbjct: 1578 PTSPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1636
Query: 362 PRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
P + + + +Y+P SP+Y TSP YSP++P+ + +SP Y
Sbjct: 1637 PSYSP-TSPSYSPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1681
Score = 54.7 bits (130), Expect = 3e-06
Identities = 48/166 (28%), Positives = 73/166 (43%), Gaps = 8/166 (4%)
Frame = +2
Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY--T 190
SP+ + Y+P ++ +P+Y+ YSP +P + SP+Y T
Sbjct: 1587 SPSYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPSYSPT---SPSYSPTSPSYSPT 1642
Query: 191 GPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPR 367
P +SP + + S SP S + T +P +P SP SP Y+ SP
Sbjct: 1643 SPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1701
Query: 368 FGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
+ G A G +P SP Y TSP YSP++P+ + +SP Y
Sbjct: 1702 YSPGHSAQNA--QGRMSPRSPVYSPTSPS--YSPTSPSYSPTSPRY 1743
[162][TOP]
>UniRef100_P36594 DNA-directed RNA polymerase II subunit rpb1 n=1
Tax=Schizosaccharomyces pombe RepID=RPB1_SCHPO
Length = 1752
Score = 58.2 bits (139), Expect = 3e-07
Identities = 49/163 (30%), Positives = 74/163 (45%), Gaps = 3/163 (1%)
Frame = +2
Query: 26 ARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAY--TGPG 199
A SP + Y+P G T A M + +YSP +P + SP+Y T P
Sbjct: 1546 AMSPGYGLTSPSYSPSSPGYSTS----PAYMPSSPSYSPT---SPSYSPTSPSYSPTSPS 1598
Query: 200 GFSPINATASF-SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGG 376
+SP + + S SP S + T +P +P SP SP Y+ SP +
Sbjct: 1599 -YSPTSPSYSATSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-- 1655
Query: 377 GLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
+ + +Y+P SP+Y TSP YSP++P+ + +SP Y
Sbjct: 1656 ------SPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1690
Score = 55.8 bits (133), Expect = 2e-06
Identities = 49/170 (28%), Positives = 79/170 (46%), Gaps = 5/170 (2%)
Frame = +2
Query: 11 ASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-YSPARART-PGGTAFSPA 184
+S + SPA S Y+P ++ +P+Y+ SP+ + T P + SP+
Sbjct: 1561 SSPGYSTSPAYMPSSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPSYSATSPSYSPTSPS 1619
Query: 185 Y--TGPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAA 355
Y T P +SP + + S SP S + T +P +P SP SP Y+
Sbjct: 1620 YSPTSPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1678
Query: 356 MSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
SP + + + +Y+P SP+Y TSP YSP++P+ + +SP Y
Sbjct: 1679 TSPSYSP-TSPSYSPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1725
Score = 53.9 bits (128), Expect = 6e-06
Identities = 46/166 (27%), Positives = 75/166 (45%), Gaps = 8/166 (4%)
Frame = +2
Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY--T 190
SP+ + Y+P ++ +P+Y+ YSP +P + SP+Y T
Sbjct: 1589 SPSYSPTSPSYSPTSPSYSATSPSYSPT-SPSYSPTSPSYSPT---SPSYSPTSPSYSPT 1644
Query: 191 GPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPR 367
P +SP + + S SP S + T +P +P SP SP Y+ SP
Sbjct: 1645 SPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1703
Query: 368 FGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
+ + + +Y+P SP+Y TSP YSP++P+ + +SP Y
Sbjct: 1704 YSP-TSPSYSPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1746
[163][TOP]
>UniRef100_UPI0000F2E706 PREDICTED: similar to eomesodermin homolog (Xenopus laevis), n=1
Tax=Monodelphis domestica RepID=UPI0000F2E706
Length = 499
Score = 57.8 bits (138), Expect = 4e-07
Identities = 52/176 (29%), Positives = 66/176 (37%), Gaps = 12/176 (6%)
Frame = +2
Query: 2 DAAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSP 181
D +S P +P+ +G G E + A AA A + A AR P +
Sbjct: 91 DTFSSGASVAKPGVPDGRKGSPCGDEELPSAAAAAAAAAAAAAAAAAAAARYPMDSLSPD 150
Query: 182 AY----TGPGGFSPINATASFSPIMSSADAAGRATPGRMTPG----RSPAGRFTP----R 325
Y GP + + A S P ++A AA A G + P R P G P
Sbjct: 151 RYYLQSPGPPQGAELAAPCSLFPYPAAAAAAAAAQHGSVYPAPNGARYPYGSMLPPGGFS 210
Query: 326 MSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVS 493
+ SPG A P GG G GP GG G P Y + PG Y P A S
Sbjct: 211 AAVCSPGRAQFGPGGPGGPGSGPGGGGG---PGGYQYAQSGPGALYGPYPGAATAS 263
[164][TOP]
>UniRef100_Q1WKU4 Putative RNA polymerase II 215 kD subunit (Fragment) n=1
Tax=Drosophila erecta RepID=Q1WKU4_DROER
Length = 760
Score = 57.8 bits (138), Expect = 4e-07
Identities = 53/154 (34%), Positives = 69/154 (44%), Gaps = 5/154 (3%)
Frame = +2
Query: 59 GYTPGREGQRTPGRAFDAAMTPTYAYSPAR--ARTPGGTAFSPAYTGPGGFSPINATASF 232
G TP TP + TP Y P A TPGG +FSP+
Sbjct: 639 GSTPSMTPPMTP---WANCNTPRYFSPPGHVSAMTPGGPSFSPS---------------- 679
Query: 233 SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 412
+++DA+G M+P SPA P SP+SPG +MSP F P+
Sbjct: 680 ----AASDASG------MSPSWSPAH---PGSSPSSPG-PSMSPYFPASPSVSPS----- 720
Query: 413 YAPASPAYMATSPG---MGYSPSTPALAVSSPGY 505
Y+P SP Y A+SPG YSPS+P + +SP Y
Sbjct: 721 YSPTSPNYTASSPGGASPNYSPSSPNYSPTSPLY 754
[165][TOP]
>UniRef100_B4MAN9 DNA-directed RNA polymerase n=1 Tax=Drosophila virilis
RepID=B4MAN9_DROVI
Length = 1889
Score = 57.8 bits (138), Expect = 4e-07
Identities = 53/159 (33%), Positives = 72/159 (45%), Gaps = 10/159 (6%)
Frame = +2
Query: 59 GYTPGREGQRTPGRAFDAAMTPTYAYSPA---RARTPGGTAFSP-AYTGPGGFSPINATA 226
G TP TP + TP Y +SP+ TPGG +FSP A + G SP
Sbjct: 1497 GSTPSMTPPMTP---WVNCHTPRY-FSPSGHVSGMTPGGPSFSPSAASDASGMSP----- 1547
Query: 227 SFSPIMSSADAAGRATPG-RMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGG 403
S+SP + + ++PG M+P S + +P SP SP Y A SP G
Sbjct: 1548 SWSP---AHPGSSPSSPGPSMSPHFSTSPSVSPSYSPTSPNYTASSP----------GGA 1594
Query: 404 AGAYAPASPAYMATSP-----GMGYSPSTPALAVSSPGY 505
+ Y+P+SP Y TSP + Y+ +TP S GY
Sbjct: 1595 SPNYSPSSPNYSPTSPLYTATSLRYASATPNFNPQSTGY 1633
Score = 57.4 bits (137), Expect = 5e-07
Identities = 47/176 (26%), Positives = 71/176 (40%), Gaps = 10/176 (5%)
Frame = +2
Query: 8 AASARIARS-PAMPESERGYTPGREGQRTPGRAFDAAM----TPTYAYSPARARTPGGTA 172
A S R A + P GY+P G + +P++A S + +PG A
Sbjct: 1614 ATSLRYASATPNFNPQSTGYSPSSSGYSPTSPVYSPTSNFQSSPSFAGSGSNMYSPGN-A 1672
Query: 173 FSPAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYA 352
+SP+ + SP + + SP S + + T +P +P +PA+P Y+
Sbjct: 1673 YSPSSSNYSSNSP--SYSPMSPSYSPSSPSYSPTSPCYSPTSPSYSPTSPNYTPATPSYS 1730
Query: 353 AMSPRFGGGLGGGPAGGAGA-----YAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
SP + PA A + Y+P SP Y SP SP +P SP Y
Sbjct: 1731 PTSPNYSASPHYSPASPAYSQTGVKYSPTSPTYSPPSPSYDGSPGSPQYTPGSPQY 1786
Score = 54.3 bits (129), Expect = 4e-06
Identities = 52/163 (31%), Positives = 73/163 (44%), Gaps = 5/163 (3%)
Frame = +2
Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-YSPARARTPGGTAFSPAYTGPG-GF 205
SP+ + YTP TP+Y+ SP + +P + SPAY+ G +
Sbjct: 1712 SPSYSPTSPNYTPA---------------TPSYSPTSPNYSASPHYSPASPAYSQTGVKY 1756
Query: 206 SPINATASFSPIMSSADAAGRATPG--RMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGG 379
SP + T +SP S D + PG + TPG +P+ SP SP Y+ SP+
Sbjct: 1757 SPTSPT--YSPPSPSYDGS----PGSPQYTPGSPQYSPTSPKYSPTSPLYSPSSPQHSPS 1810
Query: 380 LGGGPAGGAGAYAPASPAYMATSPGMG-YSPSTPALAVSSPGY 505
P G Y+ SP Y SP M YSPS+ + +SP Y
Sbjct: 1811 NQYSPTG--STYSATSPRY---SPNMSIYSPSSTKYSPTSPTY 1848
[166][TOP]
>UniRef100_Q6FQS9 DNA-directed RNA polymerase n=1 Tax=Candida glabrata
RepID=Q6FQS9_CANGA
Length = 1715
Score = 57.8 bits (138), Expect = 4e-07
Identities = 51/164 (31%), Positives = 76/164 (46%), Gaps = 4/164 (2%)
Frame = +2
Query: 26 ARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTY-AYSPARARTPGGTAFSPAY--TGP 196
A SP + +PG G +PG +PT AYSP +P + SP+Y T P
Sbjct: 1519 ATSPFGAYGDAPASPGFGGVSSPG------FSPTSPAYSPT---SPSYSPTSPSYSPTSP 1569
Query: 197 GGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFG 373
+SP + + S SP S + T +P +P SP SP Y+ SP +
Sbjct: 1570 S-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY- 1627
Query: 374 GGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
+ + +Y+P SP+Y TSP YSP++P+ + +SP Y
Sbjct: 1628 -------SPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1662
Score = 56.2 bits (134), Expect = 1e-06
Identities = 43/140 (30%), Positives = 64/140 (45%), Gaps = 3/140 (2%)
Frame = +2
Query: 95 GRAFDAAMTPTYAYSPARARTPGGTAFSPAY--TGPGGFSPINATAS-FSPIMSSADAAG 265
G + A +P AY A A G SP + T P +SP + + S SP S +
Sbjct: 1513 GAEYGGATSPFGAYGDAPASPGFGGVSSPGFSPTSPA-YSPTSPSYSPTSPSYSPTSPSY 1571
Query: 266 RATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMAT 445
T +P +P SP SP Y+ SP + + + +Y+P SP+Y T
Sbjct: 1572 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPT 1623
Query: 446 SPGMGYSPSTPALAVSSPGY 505
SP YSP++P+ + +SP Y
Sbjct: 1624 SP--SYSPTSPSYSPTSPSY 1641
Score = 55.1 bits (131), Expect = 3e-06
Identities = 47/166 (28%), Positives = 75/166 (45%), Gaps = 8/166 (4%)
Frame = +2
Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY--T 190
SPA + Y+P ++ +P+Y+ YSP +P + SP+Y T
Sbjct: 1547 SPAYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPSYSPT---SPSYSPTSPSYSPT 1602
Query: 191 GPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPR 367
P +SP + + S SP S + T +P +P SP SP Y+ SP
Sbjct: 1603 SPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1661
Query: 368 FGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
+ + + +Y+P SP+Y TSP YSP++P+ + +SP Y
Sbjct: 1662 Y--------SPTSPSYSPTSPSYSPTSPS--YSPTSPSYSPTSPSY 1697
[167][TOP]
>UniRef100_UPI0000F24379 DNA-directed RNA polymerase II largest subunit (RNA polymerase II
subunit 1) (B220) n=1 Tax=Pichia stipitis CBS 6054
RepID=UPI0000F24379
Length = 1739
Score = 57.4 bits (137), Expect = 5e-07
Identities = 48/162 (29%), Positives = 76/162 (46%), Gaps = 8/162 (4%)
Frame = +2
Query: 44 PESERGYTPGREGQRTPGRAFDAAMTPTY-----AYSPARARTPGGTAFSPAY--TGPGG 202
P S +P G +P +F +++P Y +YSP +P + SP+Y T P
Sbjct: 1517 PTSPSATSPFSYGSTSP--SFGGSVSPGYGGTSPSYSPT---SPSYSPTSPSYSPTSPS- 1570
Query: 203 FSPIN-ATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGG 379
+SP + A + SP S + T +P +P SP SP Y+ SP +
Sbjct: 1571 YSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY--- 1627
Query: 380 LGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
+ + +Y+P SP+Y TSP YSP++P+ + +SP Y
Sbjct: 1628 -----SPTSPSYSPTSPSYSPTSPS--YSPTSPSYSPTSPSY 1662
Score = 55.1 bits (131), Expect = 3e-06
Identities = 48/170 (28%), Positives = 76/170 (44%), Gaps = 4/170 (2%)
Frame = +2
Query: 8 AASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTY-AYSPARARTPGGTAFSPA 184
+A++ + P +PG G + +PT +YSP +P + SPA
Sbjct: 1521 SATSPFSYGSTSPSFGGSVSPGYGGTSPSYSPTSPSYSPTSPSYSPT---SPSYSPTSPA 1577
Query: 185 Y--TGPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAA 355
Y T P +SP + + S SP S + T +P +P SP SP Y+
Sbjct: 1578 YSPTSPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1636
Query: 356 MSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
SP + + + +Y+P SP+Y TSP YSP++P+ + +SP Y
Sbjct: 1637 TSPSYSP-TSPSYSPTSPSYSPTSPSYSPTSPS--YSPTSPSYSPTSPSY 1683
Score = 54.3 bits (129), Expect = 4e-06
Identities = 34/96 (35%), Positives = 51/96 (53%), Gaps = 2/96 (2%)
Frame = +2
Query: 224 ASFSPIMSSA--DAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPA 397
A FSPI ++ D +G T S G+ T + + Y + SP FGG + G
Sbjct: 1493 AGFSPIHTAQVQDVSGGLT--------SYGGQPTSPSATSPFSYGSTSPSFGGSVSPGYG 1544
Query: 398 GGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
G + +Y+P SP+Y TSP YSP++P+ + +SP Y
Sbjct: 1545 GTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPAY 1578
[168][TOP]
>UniRef100_Q4G1Y1 Major ampullate spidroin 2 (Fragment) n=1 Tax=Latrodectus hesperus
RepID=Q4G1Y1_9ARAC
Length = 542
Score = 57.4 bits (137), Expect = 5e-07
Identities = 53/180 (29%), Positives = 67/180 (37%), Gaps = 14/180 (7%)
Frame = +2
Query: 5 AAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPA 184
A A+A A A P +++ Y PG G A Y A PGG + A
Sbjct: 78 AGAAAAAAAGGAGPGTQQAYGPGGSGAAAAAAAASGPGPSGYGPGAAGPSGPGGAGAAAA 137
Query: 185 Y-----TGPGGF---------SPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTP 322
+GPGG+ S + P S A AA A G PGR +
Sbjct: 138 AAAAGGSGPGGYGQGPSGYGPSGPGGQQGYGPGGSGAAAAAAAAAGGAGPGRQQG--YGQ 195
Query: 323 RMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPG 502
S A+ AA P +GG G GP GGAGA A A+ Y P A ++ G
Sbjct: 196 GSSGAAAAAAAGGPGYGGQQGFGP-GGAGAAAAAAAGGAGPGRQQAYGPGGSGAAAAAAG 254
Score = 54.7 bits (130), Expect = 3e-06
Identities = 57/181 (31%), Positives = 70/181 (38%), Gaps = 15/181 (8%)
Frame = +2
Query: 8 AASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSP---------ARARTP 160
AA+A A P ++GY PG G A A AY P A A P
Sbjct: 56 AAAAAAAGGPGYG-GQQGYGPGGAGAAAAAAAGGAGPGTQQAYGPGGSGAAAAAAAASGP 114
Query: 161 GGTAFSPAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPAS 340
G + + P GP G A A+ A AAG + PG G+ P+G P+
Sbjct: 115 GPSGYGPGAAGPSGPGGAGAAAA-------AAAAGGSGPGGY--GQGPSG-----YGPSG 160
Query: 341 PGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPG------MGYSPSTPALAVSSPG 502
PG G G GP GG+GA A A+ A PG G S + A A PG
Sbjct: 161 PG---------GQQGYGP-GGSGAAAAAAAAAGGAGPGRQQGYGQGSSGAAAAAAAGGPG 210
Query: 503 Y 505
Y
Sbjct: 211 Y 211
Score = 53.5 bits (127), Expect = 8e-06
Identities = 57/180 (31%), Positives = 68/180 (37%), Gaps = 16/180 (8%)
Frame = +2
Query: 5 AAASARIARSPAMPESERGYTPGREGQRT------PGRAFDAAMTPTYAYSPARARTPG- 163
AAA+A A A P ++GY G G PG P A + A A G
Sbjct: 174 AAAAAAAAAGGAGPGRQQGYGQGSSGAAAAAAAGGPGYGGQQGFGPGGAGAAAAAAAGGA 233
Query: 164 GTAFSPAYTGPGGFSPINATAS---------FSPIMSSADAAGRATPGRMTPGRSPAGRF 316
G AY GPGG A A + P S A AA A G PGR +
Sbjct: 234 GPGRQQAY-GPGGSGAAAAAAGGAGPGRQQGYGPGGSGAAAAAAAAAGGAGPGRQQG--Y 290
Query: 317 TPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSS 496
S A+ AA P +GG G GP GGAGA A A+ Y P A ++
Sbjct: 291 GQGSSGAAAAAAAGGPGYGGQQGFGP-GGAGAAAAAAAGGAGPGRQQAYGPGGSGAAAAA 349
[169][TOP]
>UniRef100_A9UNH9 DNA-directed RNA polymerase n=1 Tax=Drosophila melanogaster
RepID=A9UNH9_DROME
Length = 1887
Score = 57.4 bits (137), Expect = 5e-07
Identities = 53/169 (31%), Positives = 68/169 (40%), Gaps = 20/169 (11%)
Frame = +2
Query: 59 GYTPGREGQRTPGRAFDAAMTPTYAYSPAR--ARTPGGTAFSP-AYTGPGGFSPINATAS 229
G TP TP + TP Y P A TPGG +FSP A + G SP S
Sbjct: 1497 GSTPSMTPPMTP---WANCNTPRYFSPPGHVSAMTPGGPSFSPSAASDASGMSP-----S 1548
Query: 230 FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAG 409
+SP A ++P P SP + P SP Y+ SP + P G +
Sbjct: 1549 WSP------AHPGSSPSSPGPSMSP---YFPASPSVSPSYSPTSPNY---TASSPGGASP 1596
Query: 410 AYAPASPAYMATSP-----------------GMGYSPSTPALAVSSPGY 505
Y+P+SP Y TSP GYSPS+ + +SP Y
Sbjct: 1597 NYSPSSPNYSPTSPLYASPRYASTTPNFNPQSTGYSPSSSGYSPTSPVY 1645
Score = 55.8 bits (133), Expect = 2e-06
Identities = 50/183 (27%), Positives = 75/183 (40%), Gaps = 18/183 (9%)
Frame = +2
Query: 11 ASARIARS-PAMPESERGYTPGREGQRTPGRAFDAAM----TPTYA------YSPARART 157
AS R A + P GY+P G + + +P++A YSP A +
Sbjct: 1613 ASPRYASTTPNFNPQSTGYSPSSSGYSPTSPVYSPTVQFQSSPSFAGSGSNIYSPGNAYS 1672
Query: 158 PGGTAFSPAYTGPGGFSPINATASFSPIMSSADAAGRATP--GRMTPGRSPAGRFTPRMS 331
P + +SP +SP + S+SP S+ + +P +P SP +P +
Sbjct: 1673 PSSSNYSP---NSPSYSP--TSPSYSP---SSPSYSPTSPCYSPTSPSYSPT---SPNYT 1721
Query: 332 PASPGYAAMSPRFGGGLGGGPAGGAGA-----YAPASPAYMATSPGMGYSPSTPALAVSS 496
P +P Y+ SP + PA A + Y+P SP Y SP SP +P S
Sbjct: 1722 PVTPSYSPTSPNYSASPQYSPASPAYSQTGVKYSPTSPTYSPPSPSYDGSPGSPQYTPGS 1781
Query: 497 PGY 505
P Y
Sbjct: 1782 PQY 1784
[170][TOP]
>UniRef100_C5DXL0 DNA-directed RNA polymerase n=1 Tax=Zygosaccharomyces rouxii CBS 732
RepID=C5DXL0_ZYGRC
Length = 1744
Score = 57.4 bits (137), Expect = 5e-07
Identities = 46/149 (30%), Positives = 72/149 (48%), Gaps = 2/149 (1%)
Frame = +2
Query: 65 TPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPG-GFSPINATAS-FSP 238
+PG G +PG + +PTY SP +P + SP+Y+ P +SP + + S SP
Sbjct: 1527 SPGFGGVSSPGFS---PSSPTY--SPT---SPSYSPTSPSYSPPSPNYSPTSPSYSPTSP 1578
Query: 239 IMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYA 418
S + T +P +P SP SP Y+ SP + + + +Y+
Sbjct: 1579 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP-TSPSYSPTSPSYS 1637
Query: 419 PASPAYMATSPGMGYSPSTPALAVSSPGY 505
P SP+Y TSP YSP++P+ + +SP Y
Sbjct: 1638 PTSPSYSPTSP--SYSPTSPSYSPTSPSY 1664
Score = 54.3 bits (129), Expect = 4e-06
Identities = 48/165 (29%), Positives = 75/165 (45%), Gaps = 7/165 (4%)
Frame = +2
Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY--T 190
SP + Y+P P + +P+Y+ YSP +P + SP+Y T
Sbjct: 1542 SPTYSPTSPSYSPTSPSYSPPSPNYSPT-SPSYSPTSPSYSPT---SPSYSPTSPSYSPT 1597
Query: 191 GPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRF 370
P +SP + S+SP S + +P SP +P SP SP Y+ SP +
Sbjct: 1598 SPS-YSP--TSPSYSPTSPSYSPTSPSY-SPTSPSYSPT---SPSYSPTSPSYSPTSPSY 1650
Query: 371 GGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
+ + +Y+P SP+Y TSP YSP++P+ + +SP Y
Sbjct: 1651 --------SPTSPSYSPTSPSYSPTSP--NYSPTSPSYSPTSPSY 1685
Score = 53.5 bits (127), Expect = 8e-06
Identities = 46/166 (27%), Positives = 74/166 (44%), Gaps = 8/166 (4%)
Frame = +2
Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY--T 190
SP+ Y+P ++ +P+Y+ YSP +P + SP+Y T
Sbjct: 1556 SPSYSPPSPNYSPTSPSYSPTSPSYSPT-SPSYSPTSPSYSPT---SPSYSPTSPSYSPT 1611
Query: 191 GPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPR 367
P +SP + + S SP S + T +P +P SP SP Y+ SP
Sbjct: 1612 SPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPN 1670
Query: 368 FGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
+ + + +Y+P SP+Y TSP YSP++P+ + +SP Y
Sbjct: 1671 Y--------SPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1706
[171][TOP]
>UniRef100_A8N128 DNA-directed RNA polymerase n=1 Tax=Coprinopsis cinerea okayama7#130
RepID=A8N128_COPC7
Length = 1642
Score = 57.4 bits (137), Expect = 5e-07
Identities = 46/137 (33%), Positives = 66/137 (48%), Gaps = 7/137 (5%)
Frame = +2
Query: 116 MTPTYAYSPARARTPGGTAFSPAYTGPGGFSPINA-TASFSPIMSSA---DAAGRATPGR 283
M+P YSP+ A+SP G SP A T+ FS +++ D+ +AT
Sbjct: 1492 MSPGPGYSPSSPN-----AYSPTSPGMVPRSPYGAPTSPFSNQYATSPFYDSRRQATSPT 1546
Query: 284 MTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA---YAPASPAYMATSPG 454
+P AG +P SP SPG++ SP G P G+ A Y+PASP+Y
Sbjct: 1547 YSPTSPIAGLTSPAYSPTSPGFSPTSPN--GYSPQSPNFGSPASPNYSPASPSYSPAPAS 1604
Query: 455 MGYSPSTPALAVSSPGY 505
YSPS+P + +SP +
Sbjct: 1605 PNYSPSSPTWSPTSPAH 1621
[172][TOP]
>UniRef100_A3GID7 DNA-directed RNA polymerase n=1 Tax=Pichia stipitis
RepID=A3GID7_PICST
Length = 1739
Score = 57.4 bits (137), Expect = 5e-07
Identities = 48/162 (29%), Positives = 76/162 (46%), Gaps = 8/162 (4%)
Frame = +2
Query: 44 PESERGYTPGREGQRTPGRAFDAAMTPTY-----AYSPARARTPGGTAFSPAY--TGPGG 202
P S +P G +P +F +++P Y +YSP +P + SP+Y T P
Sbjct: 1517 PTSPSATSPFSYGSTSP--SFGGSVSPGYGGTSPSYSPT---SPSYSPTSPSYSPTSPS- 1570
Query: 203 FSPIN-ATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGG 379
+SP + A + SP S + T +P +P SP SP Y+ SP +
Sbjct: 1571 YSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY--- 1627
Query: 380 LGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
+ + +Y+P SP+Y TSP YSP++P+ + +SP Y
Sbjct: 1628 -----SPTSPSYSPTSPSYSPTSPS--YSPTSPSYSPTSPSY 1662
Score = 55.1 bits (131), Expect = 3e-06
Identities = 48/170 (28%), Positives = 76/170 (44%), Gaps = 4/170 (2%)
Frame = +2
Query: 8 AASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTY-AYSPARARTPGGTAFSPA 184
+A++ + P +PG G + +PT +YSP +P + SPA
Sbjct: 1521 SATSPFSYGSTSPSFGGSVSPGYGGTSPSYSPTSPSYSPTSPSYSPT---SPSYSPTSPA 1577
Query: 185 Y--TGPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAA 355
Y T P +SP + + S SP S + T +P +P SP SP Y+
Sbjct: 1578 YSPTSPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1636
Query: 356 MSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
SP + + + +Y+P SP+Y TSP YSP++P+ + +SP Y
Sbjct: 1637 TSPSYSP-TSPSYSPTSPSYSPTSPSYSPTSPS--YSPTSPSYSPTSPSY 1683
Score = 54.3 bits (129), Expect = 4e-06
Identities = 34/96 (35%), Positives = 51/96 (53%), Gaps = 2/96 (2%)
Frame = +2
Query: 224 ASFSPIMSSA--DAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPA 397
A FSPI ++ D +G T S G+ T + + Y + SP FGG + G
Sbjct: 1493 AGFSPIHTAQVQDVSGGLT--------SYGGQPTSPSATSPFSYGSTSPSFGGSVSPGYG 1544
Query: 398 GGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
G + +Y+P SP+Y TSP YSP++P+ + +SP Y
Sbjct: 1545 GTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPAY 1578
Score = 53.5 bits (127), Expect = 8e-06
Identities = 47/166 (28%), Positives = 74/166 (44%), Gaps = 8/166 (4%)
Frame = +2
Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY--T 190
SP+ + Y+P A+ +P+Y+ YSP +P + SP+Y T
Sbjct: 1554 SPSYSPTSPSYSPTSPSYSPTSPAYSPT-SPSYSPTSPSYSPT---SPSYSPTSPSYSPT 1609
Query: 191 GPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPR 367
P +SP + + S SP S + T +P +P SP SP Y+ SP
Sbjct: 1610 SPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1668
Query: 368 FGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
+ + + +Y+P SP+Y TSP YSP++P + +SP Y
Sbjct: 1669 Y--------SPTSPSYSPTSPSYSPTSPQ--YSPTSPQYSPTSPSY 1704
[173][TOP]
>UniRef100_P04052 DNA-directed RNA polymerase II subunit RPB1 n=2 Tax=Drosophila
melanogaster RepID=RPB1_DROME
Length = 1887
Score = 57.4 bits (137), Expect = 5e-07
Identities = 53/169 (31%), Positives = 68/169 (40%), Gaps = 20/169 (11%)
Frame = +2
Query: 59 GYTPGREGQRTPGRAFDAAMTPTYAYSPAR--ARTPGGTAFSP-AYTGPGGFSPINATAS 229
G TP TP + TP Y P A TPGG +FSP A + G SP S
Sbjct: 1497 GSTPSMTPPMTP---WANCNTPRYFSPPGHVSAMTPGGPSFSPSAASDASGMSP-----S 1548
Query: 230 FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAG 409
+SP A ++P P SP + P SP Y+ SP + P G +
Sbjct: 1549 WSP------AHPGSSPSSPGPSMSP---YFPASPSVSPSYSPTSPNY---TASSPGGASP 1596
Query: 410 AYAPASPAYMATSP-----------------GMGYSPSTPALAVSSPGY 505
Y+P+SP Y TSP GYSPS+ + +SP Y
Sbjct: 1597 NYSPSSPNYSPTSPLYASPRYASTTPNFNPQSTGYSPSSSGYSPTSPVY 1645
Score = 55.8 bits (133), Expect = 2e-06
Identities = 50/183 (27%), Positives = 75/183 (40%), Gaps = 18/183 (9%)
Frame = +2
Query: 11 ASARIARS-PAMPESERGYTPGREGQRTPGRAFDAAM----TPTYA------YSPARART 157
AS R A + P GY+P G + + +P++A YSP A +
Sbjct: 1613 ASPRYASTTPNFNPQSTGYSPSSSGYSPTSPVYSPTVQFQSSPSFAGSGSNIYSPGNAYS 1672
Query: 158 PGGTAFSPAYTGPGGFSPINATASFSPIMSSADAAGRATP--GRMTPGRSPAGRFTPRMS 331
P + +SP +SP + S+SP S+ + +P +P SP +P +
Sbjct: 1673 PSSSNYSP---NSPSYSP--TSPSYSP---SSPSYSPTSPCYSPTSPSYSPT---SPNYT 1721
Query: 332 PASPGYAAMSPRFGGGLGGGPAGGAGA-----YAPASPAYMATSPGMGYSPSTPALAVSS 496
P +P Y+ SP + PA A + Y+P SP Y SP SP +P S
Sbjct: 1722 PVTPSYSPTSPNYSASPQYSPASPAYSQTGVKYSPTSPTYSPPSPSYDGSPGSPQYTPGS 1781
Query: 497 PGY 505
P Y
Sbjct: 1782 PQY 1784
[174][TOP]
>UniRef100_B4PY98 DNA-directed RNA polymerase n=1 Tax=Drosophila yakuba
RepID=B4PY98_DROYA
Length = 1889
Score = 57.0 bits (136), Expect = 7e-07
Identities = 51/185 (27%), Positives = 76/185 (41%), Gaps = 18/185 (9%)
Frame = +2
Query: 5 AAASARIARS-PAMPESERGYTPGREGQRTPGRAFDAA----MTPTYA------YSPARA 151
A+AS R A + P GY+P G + +P++A YSP A
Sbjct: 1613 ASASPRYASTTPNFNPQSTGYSPSSSGYSPTSPVYSPTPNFQSSPSFAGSGSNIYSPGNA 1672
Query: 152 RTPGGTAFSPAYTGPGGFSPINATASFSPIMSSADAAGRATP--GRMTPGRSPAGRFTPR 325
+P + +SP +SP + S+SP S+ + +P +P SP +P
Sbjct: 1673 YSPSSSNYSP---NSPSYSP--TSPSYSP---SSPSYSPTSPCYSPTSPSYSPT---SPN 1721
Query: 326 MSPASPGYAAMSPRFGGGLGGGPAGGAGA-----YAPASPAYMATSPGMGYSPSTPALAV 490
+P +P Y+ SP + PA A + Y+P SP Y SP SP +P
Sbjct: 1722 YTPVTPSYSPTSPNYSASPHYSPASPAYSQTGVKYSPTSPTYSPPSPSYDGSPGSPQYTP 1781
Query: 491 SSPGY 505
SP Y
Sbjct: 1782 GSPQY 1786
Score = 56.2 bits (134), Expect = 1e-06
Identities = 49/152 (32%), Positives = 67/152 (44%), Gaps = 3/152 (1%)
Frame = +2
Query: 59 GYTPGREGQRTPGRAFDAAMTPTYAYSPAR--ARTPGGTAFSP-AYTGPGGFSPINATAS 229
G TP TP + TP Y P A TPGG +FSP A + G SP S
Sbjct: 1497 GSTPSMTPPMTP---WVNCNTPRYFSPPGHVSAMTPGGPSFSPSAASDASGMSP-----S 1548
Query: 230 FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAG 409
+SP A ++P P SP + P SP Y+ SP + P G +
Sbjct: 1549 WSP------AHPGSSPSSPGPSMSP---YFPASPSVSPSYSPTSPNY---TASSPGGASP 1596
Query: 410 AYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
Y+P+SP Y TSP Y+ ++P A ++P +
Sbjct: 1597 NYSPSSPNYSPTSP--LYASASPRYASTTPNF 1626
[175][TOP]
>UniRef100_C8Z6G2 Rpo21p n=1 Tax=Saccharomyces cerevisiae EC1118 RepID=C8Z6G2_YEAST
Length = 1733
Score = 57.0 bits (136), Expect = 7e-07
Identities = 48/166 (28%), Positives = 76/166 (45%), Gaps = 8/166 (4%)
Frame = +2
Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY--T 190
SPA + Y+P ++ +P+Y+ YSP +P + SP+Y T
Sbjct: 1553 SPAYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPSYSPT---SPSYSPTSPSYSPT 1608
Query: 191 GPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPR 367
P +SP + + S SP S + T +P +P SP SP Y+ SP
Sbjct: 1609 SPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPS 1667
Query: 368 FGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
+ + + +Y+P SP+Y TSP YSP++P+ + +SPGY
Sbjct: 1668 YSP-TSPSYSPTSPSYSPTSPSYSPTSPN--YSPTSPSYSPTSPGY 1710
[176][TOP]
>UniRef100_C7GKZ2 Rpo21p n=2 Tax=Saccharomyces cerevisiae RepID=C7GKZ2_YEAS2
Length = 1733
Score = 57.0 bits (136), Expect = 7e-07
Identities = 48/166 (28%), Positives = 76/166 (45%), Gaps = 8/166 (4%)
Frame = +2
Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY--T 190
SPA + Y+P ++ +P+Y+ YSP +P + SP+Y T
Sbjct: 1553 SPAYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPSYSPT---SPSYSPTSPSYSPT 1608
Query: 191 GPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPR 367
P +SP + + S SP S + T +P +P SP SP Y+ SP
Sbjct: 1609 SPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPS 1667
Query: 368 FGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
+ + + +Y+P SP+Y TSP YSP++P+ + +SPGY
Sbjct: 1668 YSP-TSPSYSPTSPSYSPTSPSYSPTSPN--YSPTSPSYSPTSPGY 1710
[177][TOP]
>UniRef100_B3LH31 DNA-directed RNA polymerase n=1 Tax=Saccharomyces cerevisiae RM11-1a
RepID=B3LH31_YEAS1
Length = 1733
Score = 57.0 bits (136), Expect = 7e-07
Identities = 48/166 (28%), Positives = 76/166 (45%), Gaps = 8/166 (4%)
Frame = +2
Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY--T 190
SPA + Y+P ++ +P+Y+ YSP +P + SP+Y T
Sbjct: 1553 SPAYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPSYSPT---SPSYSPTSPSYSPT 1608
Query: 191 GPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPR 367
P +SP + + S SP S + T +P +P SP SP Y+ SP
Sbjct: 1609 SPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPS 1667
Query: 368 FGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
+ + + +Y+P SP+Y TSP YSP++P+ + +SPGY
Sbjct: 1668 YSP-TSPSYSPTSPSYSPTSPSYSPTSPN--YSPTSPSYSPTSPGY 1710
[178][TOP]
>UniRef100_P04050 DNA-directed RNA polymerase II subunit RPB1 n=2 Tax=Saccharomyces
cerevisiae RepID=RPB1_YEAST
Length = 1733
Score = 57.0 bits (136), Expect = 7e-07
Identities = 48/166 (28%), Positives = 76/166 (45%), Gaps = 8/166 (4%)
Frame = +2
Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY--T 190
SPA + Y+P ++ +P+Y+ YSP +P + SP+Y T
Sbjct: 1553 SPAYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPSYSPT---SPSYSPTSPSYSPT 1608
Query: 191 GPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPR 367
P +SP + + S SP S + T +P +P SP SP Y+ SP
Sbjct: 1609 SPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPS 1667
Query: 368 FGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
+ + + +Y+P SP+Y TSP YSP++P+ + +SPGY
Sbjct: 1668 YSP-TSPSYSPTSPSYSPTSPSYSPTSPN--YSPTSPSYSPTSPGY 1710
[179][TOP]
>UniRef100_Q7XRB2 OSJNBa0006B20.10 protein n=3 Tax=Oryza sativa RepID=Q7XRB2_ORYSJ
Length = 335
Score = 56.6 bits (135), Expect = 9e-07
Identities = 51/162 (31%), Positives = 69/162 (42%), Gaps = 4/162 (2%)
Frame = +2
Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPG-GFS 208
+PA P R +P + P RA +P A P RA +P T SP +S
Sbjct: 64 TPASPPHRRAASPDYTPESPPRRAASPDYSP--ASPPRRAASPDYTPESPPRRAASPDYS 121
Query: 209 PINATA-SFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGY--AAMSPRFGGG 379
P + + SP + A + RA TP P +P +PASP AA SP +
Sbjct: 122 PESPPRRAASPDYTPASPSRRAASPDYTPESPPRRAASPDYTPASPSRRAAASSPDYTPE 181
Query: 380 LGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
+ Y+P++P A SP YSPSTP +SP Y
Sbjct: 182 SPPRRRAASPDYSPSTPPRRAASPD--YSPSTPPRRAASPDY 221
[180][TOP]
>UniRef100_B4JXA6 DNA-directed RNA polymerase n=1 Tax=Drosophila grimshawi
RepID=B4JXA6_DROGR
Length = 1889
Score = 56.6 bits (135), Expect = 9e-07
Identities = 51/157 (32%), Positives = 65/157 (41%), Gaps = 8/157 (5%)
Frame = +2
Query: 59 GYTPGREGQRTPGRAFDAAMTPTYAYSPAR--ARTPGGTAFSP-AYTGPGGFSPINATAS 229
G TP TP + TP Y P A TPGG +FSP A + G SP S
Sbjct: 1497 GSTPSMTPPMTP---WVNCHTPRYFSPPGHVSAMTPGGPSFSPSAASDASGMSP-----S 1548
Query: 230 FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAG 409
+SP A ++P P SP + P SP Y+ SP + P G +
Sbjct: 1549 WSP------AHPGSSPSSPGPSMSP---YFPASPSVSPSYSPTSPNY---TASSPGGASP 1596
Query: 410 AYAPASPAYMATSP-----GMGYSPSTPALAVSSPGY 505
Y+P+SP Y TSP Y+ +TP S GY
Sbjct: 1597 NYSPSSPNYSPTSPLYTATSPRYASATPNFNAQSTGY 1633
Score = 55.5 bits (132), Expect = 2e-06
Identities = 50/178 (28%), Positives = 68/178 (38%), Gaps = 12/178 (6%)
Frame = +2
Query: 8 AASARIARS-PAMPESERGYTPGREGQRTPGRAFDAAM----TPTYA------YSPARAR 154
A S R A + P GY+P G + +P++A YSP A
Sbjct: 1614 ATSPRYASATPNFNAQSTGYSPSSSGYSPTSPVYSPTSNFQSSPSFAGSGSNLYSPGNAY 1673
Query: 155 TPGGTAFSPAYTGPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMS 331
+P + +SP +SP++ + S SP S T +P TP S
Sbjct: 1674 SPSSSNYSP---NSPSYSPMSPSYSPSSPSYSPTSPCYSPTSPSYSPTSPKYTAVTPSYS 1730
Query: 332 PASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
P SP Y+A SP + G Y+P SP Y SP SP +P SP Y
Sbjct: 1731 PTSPNYSA-SPHYSPASPAYSQTGV-KYSPTSPTYSPPSPSYDGSPGSPQYTPGSPQY 1786
[181][TOP]
>UniRef100_O96452 DNA-directed RNA polymerase n=1 Tax=Antonospora locustae
RepID=O96452_ANTLO
Length = 1553
Score = 56.6 bits (135), Expect = 9e-07
Identities = 36/97 (37%), Positives = 48/97 (49%)
Frame = +2
Query: 215 NATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGP 394
+++ FSPI + AAG TP +P +P SP SP Y+ SP
Sbjct: 1417 SSSVPFSPIAAHGYAAG-TTPSVYSPTSPAYSPTSPAYSPTSPAYSPTSP---------- 1465
Query: 395 AGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
AY+P SPAY TSP YSP++PA + +SP Y
Sbjct: 1466 -----AYSPTSPAYSPTSP--AYSPTSPAYSPTSPAY 1495
Score = 53.9 bits (128), Expect = 6e-06
Identities = 38/109 (34%), Positives = 52/109 (47%), Gaps = 1/109 (0%)
Frame = +2
Query: 182 AYTGPGGFSPIN-ATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAM 358
A T P +SP + A + SP S A T +P +P SP SP Y+
Sbjct: 1432 AGTTPSVYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPT 1491
Query: 359 SPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
SP + + + AY+P SPAY TSP YSP++PA + +SP Y
Sbjct: 1492 SPAY--------SPTSPAYSPTSPAYSPTSP--AYSPTSPAYSPTSPVY 1530
[182][TOP]
>UniRef100_C7YI77 Predicted protein n=1 Tax=Nectria haematococca mpVI 77-13-4
RepID=C7YI77_NECH7
Length = 1750
Score = 56.6 bits (135), Expect = 9e-07
Identities = 50/166 (30%), Positives = 73/166 (43%), Gaps = 17/166 (10%)
Frame = +2
Query: 59 GYTPGREGQRTPGRAF-DAAMTPTYAYSPARARTPGGTAFSPAYTGPGGFSPINATASFS 235
GY+P +P D M YA SP+ + P +FSP SP A+ ++S
Sbjct: 1573 GYSPTSPNAYSPTSPLVDGGMGGRYATSPSFS--PSSPSFSPTSPMVRPTSP--ASPNYS 1628
Query: 236 PIMSSADAAGRATPGRMTPGRSPA---GRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGA 406
P + A ++P +P SPA +P SPASP Y+ SP G P+
Sbjct: 1629 PSSPNYSPASPSSPRHYSP-TSPAQFNSPTSPNYSPASPNYSPASPNLHAGGTTSPS--- 1684
Query: 407 GAYAPASPAYMATSP-------------GMGYSPSTPALAVSSPGY 505
Y+PASP + TSP G SP++P+ + +SP +
Sbjct: 1685 --YSPASPTWSPTSPEAYSPTSPYQRSPGAQQSPTSPSYSPTSPAF 1728
Score = 54.3 bits (129), Expect = 4e-06
Identities = 43/150 (28%), Positives = 62/150 (41%), Gaps = 5/150 (3%)
Frame = +2
Query: 65 TPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGFSPI--NATASFSP 238
TP G G AM+P Y+ +P T+ + + GG+SP NA + SP
Sbjct: 1531 TPAGFGNTEYGFGGSTAMSP---YAMRGGTSPFTTSPTSPFGPGGGYSPTSPNAYSPTSP 1587
Query: 239 IMSSADAAGRATPGRMTPGR---SPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAG 409
++ AT +P SP SPASP Y+ SP + P
Sbjct: 1588 LVDGGMGGRYATSPSFSPSSPSFSPTSPMVRPTSPASPNYSPSSPNYSPASPSSPRH--- 1644
Query: 410 AYAPASPAYMATSPGMGYSPSTPALAVSSP 499
Y+P SPA + YSP++P + +SP
Sbjct: 1645 -YSPTSPAQFNSPTSPNYSPASPNYSPASP 1673
[183][TOP]
>UniRef100_UPI00005A0B19 PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide
A isoform 5 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B19
Length = 1693
Score = 56.2 bits (134), Expect = 1e-06
Identities = 47/145 (32%), Positives = 66/145 (45%)
Frame = +2
Query: 71 GREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGFSPINATASFSPIMSS 250
GR G TPG A AM+P+Y+ P A+ P PGG++P + S+SP
Sbjct: 1480 GRSGM-TPGAA-GGAMSPSYS--------PTSPAYEPR--SPGGYTP--QSPSYSPT--- 1522
Query: 251 ADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASP 430
+P SP +P SP SP Y+ SP +Y+P SP
Sbjct: 1523 ------------SPSYSPT---SPSYSPTSPNYSPTSP---------------SYSPTSP 1552
Query: 431 AYMATSPGMGYSPSTPALAVSSPGY 505
+Y TSP YSP++P+ + +SP Y
Sbjct: 1553 SYSPTSP--SYSPTSPSYSPTSPSY 1575
Score = 53.9 bits (128), Expect = 6e-06
Identities = 50/190 (26%), Positives = 77/190 (40%), Gaps = 30/190 (15%)
Frame = +2
Query: 26 ARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARAR----TPGGTAFS 178
A SP+ + Y P G TP + +P+Y+ YSP +P + S
Sbjct: 1492 AMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTS 1551
Query: 179 PAY--TGPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGY 349
P+Y T P +SP + + S SP S + T +P +P SP SP Y
Sbjct: 1552 PSYSPTSPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1610
Query: 350 AAMSPRFG------GGLGGGPAGGAGAYAPASPAYMATSPGMG------------YSPST 475
+ SP + + + +Y+P SP+Y TSP YSP++
Sbjct: 1611 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPSRPNYTPTSPSYSPTS 1670
Query: 476 PALAVSSPGY 505
P+ + +SP Y
Sbjct: 1671 PSYSPTSPNY 1680
Score = 53.5 bits (127), Expect = 8e-06
Identities = 34/83 (40%), Positives = 45/83 (54%)
Frame = +2
Query: 257 AAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAY 436
AAGR+ MTPG + G +P SP SP Y SP GG + +Y+P SP+Y
Sbjct: 1478 AAGRSG---MTPGAA-GGAMSPSYSPTSPAYEPRSP-------GGYTPQSPSYSPTSPSY 1526
Query: 437 MATSPGMGYSPSTPALAVSSPGY 505
TSP YSP++P + +SP Y
Sbjct: 1527 SPTSP--SYSPTSPNYSPTSPSY 1547
[184][TOP]
>UniRef100_Q30GY4 CT099 (Fragment) n=1 Tax=Solanum ochranthum RepID=Q30GY4_9SOLN
Length = 305
Score = 56.2 bits (134), Expect = 1e-06
Identities = 45/163 (27%), Positives = 65/163 (39%), Gaps = 15/163 (9%)
Frame = +2
Query: 59 GYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPG----GTAFSPAYTGPGGFS------ 208
G P G TP TP+ SPA A G GT +P+ P G +
Sbjct: 104 GVAPPSNGSTTPSPTGSPPSTPSGGSSPAAAPPKGSSTPGTPSAPSANAPAGSATPGASS 163
Query: 209 ----PINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGG 376
P++ A SP S + A+P P + G P MSP + G + +P
Sbjct: 164 PNGAPVSTPAGKSPTSSPTPSGSTASP----PAPATGGSVAPAMSPVANGPSTSTPGSSS 219
Query: 377 GLGGGPAGGAG-AYAPASPAYMATSPGMGYSPSTPALAVSSPG 502
+ GGP+ G+G A + P+ +P + P +A SPG
Sbjct: 220 PIAGGPSSGSGIAPSAGGPSGSVIAP----AADGPVVASVSPG 258
[185][TOP]
>UniRef100_B3MQ29 DNA-directed RNA polymerase n=1 Tax=Drosophila ananassae
RepID=B3MQ29_DROAN
Length = 1889
Score = 56.2 bits (134), Expect = 1e-06
Identities = 49/152 (32%), Positives = 67/152 (44%), Gaps = 3/152 (1%)
Frame = +2
Query: 59 GYTPGREGQRTPGRAFDAAMTPTYAYSPAR--ARTPGGTAFSP-AYTGPGGFSPINATAS 229
G TP TP + TP Y P A TPGG +FSP A + G SP S
Sbjct: 1497 GSTPSMTPPMTP---WVNCNTPRYFSPPGHVSAMTPGGPSFSPSAASDASGMSP-----S 1548
Query: 230 FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAG 409
+SP A ++P P SP + P SP Y+ SP + P G +
Sbjct: 1549 WSP------AHPGSSPSSPGPSMSP---YFPASPSVSPSYSPTSPNY---TASSPGGASP 1596
Query: 410 AYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
Y+P+SP Y TSP Y+ ++P A ++P +
Sbjct: 1597 NYSPSSPNYSPTSP--LYATTSPRYASTTPNF 1626
Score = 55.1 bits (131), Expect = 3e-06
Identities = 50/185 (27%), Positives = 74/185 (40%), Gaps = 18/185 (9%)
Frame = +2
Query: 5 AAASARIARS-PAMPESERGYTPGREGQRTPGRAFDAAM----TPTYA------YSPARA 151
A S R A + P GY+P G + +P++A YSP A
Sbjct: 1613 ATTSPRYASTTPNFNPQSTGYSPSSSGYSPTSPVYSPTSNYQSSPSFAGSGSNMYSPGNA 1672
Query: 152 RTPGGTAFSPAYTGPGGFSPINATASFSPIMSSADAAGRATP--GRMTPGRSPAGRFTPR 325
+P + +SP +SP + S+SP S+ + +P +P SP +P
Sbjct: 1673 YSPSSSNYSP---NSPSYSP--TSPSYSP---SSPSYSPTSPCYSPTSPSYSPT---SPN 1721
Query: 326 MSPASPGYAAMSPRFGGGLGGGPAGGAGA-----YAPASPAYMATSPGMGYSPSTPALAV 490
+P +P Y+ SP + PA A + Y+P SP Y SP SP +P
Sbjct: 1722 YTPVTPSYSPTSPNYSASPHYSPASPAYSQTGVKYSPTSPTYSPPSPSYDGSPGSPQYTP 1781
Query: 491 SSPGY 505
SP Y
Sbjct: 1782 GSPQY 1786
[186][TOP]
>UniRef100_C4VAM1 DNA-directed RNA polymerase n=1 Tax=Nosema ceranae BRL01
RepID=C4VAM1_NOSCE
Length = 1612
Score = 56.2 bits (134), Expect = 1e-06
Identities = 49/165 (29%), Positives = 75/165 (45%), Gaps = 7/165 (4%)
Frame = +2
Query: 32 SPAMPESERGYTPGRE----GQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAY--TG 193
SPA E Y+P G + G A + + +YSP +P + SP+Y T
Sbjct: 1427 SPAYLAEESKYSPKLSLFSVGSPSYGSASPSYSPTSPSYSPT---SPSYSPTSPSYSPTS 1483
Query: 194 PGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRF 370
P +SP + + S SP S + T +P +P SP SP Y+ SP +
Sbjct: 1484 PS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1542
Query: 371 GGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
+ + +Y+P SP+Y TSP YSP++P+ + +SP Y
Sbjct: 1543 --------SPTSPSYSPTSPSYSPTSPS--YSPTSPSYSPTSPSY 1577
[187][TOP]
>UniRef100_UPI00005A0B26 PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide
A isoform 17 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B26
Length = 1684
Score = 55.8 bits (133), Expect = 2e-06
Identities = 54/190 (28%), Positives = 83/190 (43%), Gaps = 25/190 (13%)
Frame = +2
Query: 11 ASARIARSPAM-PESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARAR----TP 160
A+ R + SPA P S GYTP + +P + +P+Y+ YSP +P
Sbjct: 1485 AAGRESTSPAYEPRSPGGYTP-QSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSP 1543
Query: 161 GGTAFSPAY--TGPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMS 331
+ SP+Y T P +SP + + S SP S + T +P +P S
Sbjct: 1544 SYSPTSPSYSPTSPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1602
Query: 332 PASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMG------------YSPST 475
P SP Y+ SP + + + +Y+P SP+Y TSP YSP++
Sbjct: 1603 PTSPSYSPTSPSYSP-TSPSYSPTSPSYSPTSPSYSPTSPNYSPSRPNYTPTSPSYSPTS 1661
Query: 476 PALAVSSPGY 505
P+ + +SP Y
Sbjct: 1662 PSYSPTSPNY 1671
[188][TOP]
>UniRef100_UPI000023F34A hypothetical protein FG00916.1 n=1 Tax=Gibberella zeae PH-1
RepID=UPI000023F34A
Length = 1758
Score = 55.8 bits (133), Expect = 2e-06
Identities = 46/137 (33%), Positives = 64/137 (46%), Gaps = 17/137 (12%)
Frame = +2
Query: 119 TPTYAYSPARARTPGG---------TAFSPAYTGPGGFSPI-----NATASFSPIMSSAD 256
+P YSP GG +FSP+ SP+ A+ S+SP S
Sbjct: 1582 SPNMGYSPTSPLIDGGGMGRYGPTSPSFSPSSPSFSPTSPMLRPTSPASPSYSPTSPSYS 1641
Query: 257 AAGRATPGRMTPGRSPA---GRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPAS 427
++P +P SPA +P SPASP Y+ SP G GGP + +Y+PAS
Sbjct: 1642 PTSPSSPRHYSP-TSPAQFNSPTSPSYSPASPNYSPTSPNVHG--AGGPT--SPSYSPAS 1696
Query: 428 PAYMATSPGMGYSPSTP 478
P++ TSP YSP++P
Sbjct: 1697 PSWSPTSP-EAYSPTSP 1712
[189][TOP]
>UniRef100_B4L732 DNA-directed RNA polymerase n=1 Tax=Drosophila mojavensis
RepID=B4L732_DROMO
Length = 1889
Score = 55.8 bits (133), Expect = 2e-06
Identities = 50/153 (32%), Positives = 70/153 (45%), Gaps = 4/153 (2%)
Frame = +2
Query: 59 GYTPGREGQRTPGRAFDAAMTPTYAYSPA---RARTPGGTAFSP-AYTGPGGFSPINATA 226
G TP TP + TP Y +SP+ A TPGG +FSP A + G SP
Sbjct: 1497 GSTPSMTPPMTP---WVNCHTPRY-FSPSGHVSAMTPGGPSFSPSAASDASGMSP----- 1547
Query: 227 SFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGA 406
S+SP A ++P P SP + P SP Y+ SP + P G +
Sbjct: 1548 SWSP------AHPGSSPSSPGPSMSP---YFPASPSVSPSYSPTSPNY---TASSPGGAS 1595
Query: 407 GAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
Y+P+SP Y TSP Y+ ++P A ++P +
Sbjct: 1596 PNYSPSSPNYSPTSP--LYASTSPRYASTTPNF 1626
Score = 55.8 bits (133), Expect = 2e-06
Identities = 50/185 (27%), Positives = 73/185 (39%), Gaps = 18/185 (9%)
Frame = +2
Query: 5 AAASARIARS-PAMPESERGYTPGREGQRTPGRAFDAAM----TPTYA------YSPARA 151
A+ S R A + P GY+P G + +P++A YSP A
Sbjct: 1613 ASTSPRYASTTPNFNPQSTGYSPSSSGYSPTSPVYSPTSNFQSSPSFAGSGSNMYSPGNA 1672
Query: 152 RTPGGTAFSPAYTGPGGFSPINATASFSPIMSSADAAGRATP--GRMTPGRSPAGRFTPR 325
+P + +SP SP S+SP S+ + +P +P SP +P
Sbjct: 1673 YSPSSSNYSPNSPSYSPMSP-----SYSP---SSPSYSPTSPCYSPTSPSYSPT---SPN 1721
Query: 326 MSPASPGYAAMSPRFGGGLGGGPAGGAGA-----YAPASPAYMATSPGMGYSPSTPALAV 490
+P +P Y+ SP + PA A + Y+P SP Y SP SP +P
Sbjct: 1722 YTPVTPSYSPTSPNYSASPHYSPASPAYSQTGVKYSPTSPTYSPPSPSYDGSPGSPQYTP 1781
Query: 491 SSPGY 505
SP Y
Sbjct: 1782 GSPQY 1786
[190][TOP]
>UniRef100_UPI000151A8B3 hypothetical protein PGUG_01105 n=1 Tax=Pichia guilliermondii ATCC
6260 RepID=UPI000151A8B3
Length = 1018
Score = 55.5 bits (132), Expect = 2e-06
Identities = 49/139 (35%), Positives = 63/139 (45%), Gaps = 16/139 (11%)
Frame = +2
Query: 137 SPARARTPGGTAFSP-AYTGPGGFSP------------INATASFSPIMSS--ADAAGRA 271
SP+ P G A AY GG +P A FSPI ++ +D AG
Sbjct: 721 SPSNMSVPVGAAEGAGAYADDGGATPYREYDMEDDKIQFEEGAGFSPIHTAPVSDGAGAL 780
Query: 272 TPGRMTPGRSPAGRFTPRMSPASP-GYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATS 448
T PG SP SP SP Y A SP +GG G + Y+P SP+Y TS
Sbjct: 781 TAYGGQPG-SP--------SPTSPFAYGATSPAYGGA-SPGYGVTSPTYSPTSPSYSPTS 830
Query: 449 PGMGYSPSTPALAVSSPGY 505
P YSP++P+ + +SP Y
Sbjct: 831 P--SYSPTSPSYSPTSPSY 847
Score = 55.5 bits (132), Expect = 2e-06
Identities = 46/143 (32%), Positives = 66/143 (46%), Gaps = 8/143 (5%)
Frame = +2
Query: 101 AFDAAMTP--TYAYSPARARTPGGTAFSPAYTGP--GGFSPINATASF--SPIMSSADAA 262
A D TP Y + + G FSP +T P G + A SP +S A
Sbjct: 739 ADDGGATPYREYDMEDDKIQFEEGAGFSPIHTAPVSDGAGALTAYGGQPGSPSPTSPFAY 798
Query: 263 GRATP--GRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAY 436
G +P G +PG G +P SP SP Y+ SP + + + +Y+P SP+Y
Sbjct: 799 GATSPAYGGASPGY---GVTSPTYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSY 847
Query: 437 MATSPGMGYSPSTPALAVSSPGY 505
TSP YSP++P+ + +SP Y
Sbjct: 848 SPTSP--SYSPTSPSYSPTSPSY 868
[191][TOP]
>UniRef100_Q8FM53 Putative uncharacterized protein n=1 Tax=Corynebacterium efficiens
RepID=Q8FM53_COREF
Length = 609
Score = 55.5 bits (132), Expect = 2e-06
Identities = 52/150 (34%), Positives = 64/150 (42%), Gaps = 12/150 (8%)
Frame = +2
Query: 89 TPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGFSPINATASFSPIMSSADAAGR 268
TPG A A TPT +P A G A A PG P A +P +++ A G
Sbjct: 94 TPGAAVPAPATPTPPAAPGSAIPAPGAATPTAVPTPGSAIPTPGAAVPAPGVATPSAPGA 153
Query: 269 ATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGL----GGGPA-----GGAGAYAP 421
+ P TPG A TP + +PG AA G GG PA GA AP
Sbjct: 154 SIP---TPG---AAMPTPGTATPAPGAAAPGATIPGSAVPAPGGAPAAPGAPAAPGAAAP 207
Query: 422 ASPAYMATSPGM---GYSPSTPALAVSSPG 502
+PA A PG G + TP A+S+PG
Sbjct: 208 RTPAPGAAIPGAVAPGSAVPTPG-AISAPG 236
[192][TOP]
>UniRef100_B5DKU7 GA22939 n=1 Tax=Drosophila pseudoobscura pseudoobscura
RepID=B5DKU7_DROPS
Length = 893
Score = 55.5 bits (132), Expect = 2e-06
Identities = 48/169 (28%), Positives = 70/169 (41%), Gaps = 4/169 (2%)
Frame = +2
Query: 8 AASARIARSPAMPESERGYT--PGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSP 181
A S R+PA P + G T PG TP A++ +PA P G+ +P
Sbjct: 446 AGSTAAPRTPADPNAPAGSTAAPG-----TPADPNAPAVSTAAPGTPADPNAPAGSTAAP 500
Query: 182 AYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAA-- 355
++ A +P +A A A PG +PA P +S A+PG A
Sbjct: 501 GTPADPNAPAVSTAAPGTPADPNAPAVSTAAPG------TPADPNAPAVSTAAPGTPADP 554
Query: 356 MSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPG 502
+P G PA AP +PA +PG P+ PA++ ++PG
Sbjct: 555 NAPPVSTAAPGTPAAPGTPAAPGTPA----APGAPAVPNAPAVSTAAPG 599
[193][TOP]
>UniRef100_A5DCV3 DNA-directed RNA polymerase II subunit RPB1 (Fragments) n=1
Tax=Pichia guilliermondii RepID=RPB1_PICGU
Length = 1579
Score = 55.5 bits (132), Expect = 2e-06
Identities = 49/139 (35%), Positives = 63/139 (45%), Gaps = 16/139 (11%)
Frame = +2
Query: 137 SPARARTPGGTAFSP-AYTGPGGFSP------------INATASFSPIMSS--ADAAGRA 271
SP+ P G A AY GG +P A FSPI ++ +D AG
Sbjct: 1287 SPSNMSVPVGAAEGAGAYADDGGATPYREYDMEDDKIQFEEGAGFSPIHTAPVSDGAGAL 1346
Query: 272 TPGRMTPGRSPAGRFTPRMSPASP-GYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATS 448
T PG SP SP SP Y A SP +GG G + Y+P SP+Y TS
Sbjct: 1347 TAYGGQPG-SP--------SPTSPFAYGATSPAYGGA-SPGYGVTSPTYSPTSPSYSPTS 1396
Query: 449 PGMGYSPSTPALAVSSPGY 505
P YSP++P+ + +SP Y
Sbjct: 1397 P--SYSPTSPSYSPTSPSY 1413
Score = 55.5 bits (132), Expect = 2e-06
Identities = 46/143 (32%), Positives = 66/143 (46%), Gaps = 8/143 (5%)
Frame = +2
Query: 101 AFDAAMTP--TYAYSPARARTPGGTAFSPAYTGP--GGFSPINATASF--SPIMSSADAA 262
A D TP Y + + G FSP +T P G + A SP +S A
Sbjct: 1305 ADDGGATPYREYDMEDDKIQFEEGAGFSPIHTAPVSDGAGALTAYGGQPGSPSPTSPFAY 1364
Query: 263 GRATP--GRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAY 436
G +P G +PG G +P SP SP Y+ SP + + + +Y+P SP+Y
Sbjct: 1365 GATSPAYGGASPGY---GVTSPTYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSY 1413
Query: 437 MATSPGMGYSPSTPALAVSSPGY 505
TSP YSP++P+ + +SP Y
Sbjct: 1414 SPTSP--SYSPTSPSYSPTSPSY 1434
[194][TOP]
>UniRef100_UPI0000E12351 Os05g0151000 n=1 Tax=Oryza sativa Japonica Group RepID=UPI0000E12351
Length = 2085
Score = 55.1 bits (131), Expect = 3e-06
Identities = 46/140 (32%), Positives = 69/140 (49%), Gaps = 11/140 (7%)
Frame = +2
Query: 119 TPTYAYSPARARTPGGTAFSPAY----TGPGGFSPINATAS-FSPIMSSADAAGRATPGR 283
+P+Y+YSP +P + SP+Y T P +SP + + S SP S + T
Sbjct: 1680 SPSYSYSPT---SPSYSPTSPSYNYSPTSPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPS 1735
Query: 284 MTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGG-GPAG----GAGAYAPASPAYMA-T 445
+P S +P SP SPGY+ SP + P+ + AY+P+SP Y + T
Sbjct: 1736 YSPTSSAYSPTSPAYSPTSPGYSPTSPSYSPSSPSYNPSSVKYTPSHAYSPSSPNYYSST 1795
Query: 446 SPGMGYSPSTPALAVSSPGY 505
SP YSP++P+ + SP Y
Sbjct: 1796 SPT--YSPTSPSYSQPSPSY 1813
Score = 53.5 bits (127), Expect = 8e-06
Identities = 46/160 (28%), Positives = 69/160 (43%), Gaps = 6/160 (3%)
Frame = +2
Query: 44 PESERGYTPGREGQRTPGRAFDAAMTP----TYAYSPARARTPGGTA--FSPAYTGPGGF 205
P S GY+P TPG + +P + YSPA + T+ + P
Sbjct: 1549 PSSGGGYSPSPP-VCTPGPGSFTSSSPYNPVSPFYSPASPLSCPLTSPSYVPTSLPHSPT 1607
Query: 206 SPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLG 385
SPI + S PI S + T +P +P +P S Y+ SP +
Sbjct: 1608 SPIYSATS--PIYSPSSPIYSPTSLSYSPTSPVYSPTSPVYNPTSSAYSPTSPSYN---- 1661
Query: 386 GGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
P + +Y+P SP+Y TSP YSP++P+ + +SP Y
Sbjct: 1662 --PTSPSYSYSPTSPSYSPTSPSYSYSPTSPSYSPTSPSY 1699
[195][TOP]
>UniRef100_UPI00005A516D PREDICTED: hypothetical protein XP_855920 n=1 Tax=Canis lupus
familiaris RepID=UPI00005A516D
Length = 335
Score = 55.1 bits (131), Expect = 3e-06
Identities = 52/152 (34%), Positives = 72/152 (47%), Gaps = 8/152 (5%)
Frame = +2
Query: 65 TPGRE--GQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGFSPINAT-ASFS 235
TPGR G+ TP R+ + TP + +P+R+ TP + +PA PG +P +T A +
Sbjct: 11 TPGRSTPGRSTPSRSTPSRSTPARS-TPSRSTTPARS--TPARNTPGRSTPARSTPARST 67
Query: 236 PIMS--SADAAGRATPGRMTPGRSPAGRFTP-RMSPASPGYAAMSPRFGGGLGGGPAGGA 406
P S S R+TP R TPGRS R TP R +PA A +P P+
Sbjct: 68 PGRSTPSRSTPSRSTPARSTPGRSTPSRSTPARSTPARSKPARSTPSRSTPTRSTPSRST 127
Query: 407 GAYA-PASPAYMATSPGMGY-SPSTPALAVSS 496
A + PA ++PG S STP + S
Sbjct: 128 PARSTPARSTPARSTPGRSTPSRSTPGRSTPS 159
Score = 53.9 bits (128), Expect = 6e-06
Identities = 58/165 (35%), Positives = 78/165 (47%), Gaps = 14/165 (8%)
Frame = +2
Query: 26 ARSPAMPESERGYTPGRE-------GQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPA 184
ARS + TPGR + TPGR+ + TP+ + +PAR+ TP + +P+
Sbjct: 139 ARSTPGRSTPSRSTPGRSTPSRSTPSRSTPGRSTPSRSTPSRS-TPARS-TPARS--TPS 194
Query: 185 YTGPGGFSPINATASFS-PIMS--SADAAGRATPGRMTPGRSPAGRFTP-RMSPA--SPG 346
+ P +P +T S S P S S R+TP R TP RS R TP R +PA P
Sbjct: 195 RSTPARSTPSRSTPSRSTPARSTPSRSTPSRSTPSRSTPSRSTPARSTPSRSTPARTRPL 254
Query: 347 YAAMSPRFGG-GLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTP 478
A +P GG GGG G A P +P A P SP++P
Sbjct: 255 EAPSAPAGGGPACGGGRCGEARERCPRAPG-QARRP----SPASP 294
[196][TOP]
>UniRef100_Q5YNA3 Putative membrane protein n=1 Tax=Nocardia farcinica
RepID=Q5YNA3_NOCFA
Length = 1126
Score = 55.1 bits (131), Expect = 3e-06
Identities = 52/167 (31%), Positives = 61/167 (36%), Gaps = 7/167 (4%)
Frame = +2
Query: 23 IARSPAMPES-----ERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAY 187
+A P P + + G PGR G +P +A A PA G PA
Sbjct: 797 VAPDPTRPRAHPQPGQEGARPGRPGPASPFQAGSAFQAVPSVDQPATGPKQPGHPGKPA- 855
Query: 188 TGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMS--PASPGYAAMS 361
GP G SS GR P R PGRS P S P PG AA +
Sbjct: 856 -GPSG-------------QSSVPGLGRPLPSRPQPGRSAPAEPQPGPSAQPPHPGGAA-A 900
Query: 362 PRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPG 502
P+ GGG P GA P +P P +P PA V PG
Sbjct: 901 PKAGGG---APLPGARPAPPRAPGASVGEPTRPQAPPRPARPVGPPG 944
[197][TOP]
>UniRef100_Q0JJP4 Os01g0726700 protein n=1 Tax=Oryza sativa Japonica Group
RepID=Q0JJP4_ORYSJ
Length = 662
Score = 55.1 bits (131), Expect = 3e-06
Identities = 56/193 (29%), Positives = 73/193 (37%), Gaps = 27/193 (13%)
Frame = +2
Query: 2 DAAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSP 181
D S SP P GYTP + + TP +P TP +
Sbjct: 232 DTPPSPSSGSSPTTPGGGGGYTPTPSDTPPSPSSGSSRTTPGGCSTPTPCGTPPAPSSGT 291
Query: 182 AYTGPGG-FSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAM 358
+ T PGG + P + P S+D + TPG G SP+ TP +P SP
Sbjct: 292 SPTTPGGSYYPPTPSIGDVPPSPSSDTSP-TTPG----GGSPS---TPCDTPPSPSSGTS 343
Query: 359 SPRFGGGL----------------GGGPAG-GAGAYAPASPAYMA---------TSPGMG 460
GGG G P+ G+G Y+P++P T+PG G
Sbjct: 344 PTTPGGGYYPPTPSVGDVPPSPASGTSPSTPGSGGYSPSTPCSAPPSPSSGTSPTTPGGG 403
Query: 461 YSPSTPALAVSSP 499
YSPSTP A SP
Sbjct: 404 YSPSTPCNAPPSP 416
[198][TOP]
>UniRef100_B9EZH8 Putative uncharacterized protein n=1 Tax=Oryza sativa Japonica
Group RepID=B9EZH8_ORYSJ
Length = 650
Score = 55.1 bits (131), Expect = 3e-06
Identities = 56/193 (29%), Positives = 73/193 (37%), Gaps = 27/193 (13%)
Frame = +2
Query: 2 DAAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSP 181
D S SP P GYTP + + TP +P TP +
Sbjct: 220 DTPPSPSSGSSPTTPGGGGGYTPTPSDTPPSPSSGSSRTTPGGCSTPTPCGTPPAPSSGT 279
Query: 182 AYTGPGG-FSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAM 358
+ T PGG + P + P S+D + TPG G SP+ TP +P SP
Sbjct: 280 SPTTPGGSYYPPTPSIGDVPPSPSSDTSP-TTPG----GGSPS---TPCDTPPSPSSGTS 331
Query: 359 SPRFGGGL----------------GGGPAG-GAGAYAPASPAYMA---------TSPGMG 460
GGG G P+ G+G Y+P++P T+PG G
Sbjct: 332 PTTPGGGYYPPTPSVGDVPPSPASGTSPSTPGSGGYSPSTPCSAPPSPSSGTSPTTPGGG 391
Query: 461 YSPSTPALAVSSP 499
YSPSTP A SP
Sbjct: 392 YSPSTPCNAPPSP 404
[199][TOP]
>UniRef100_Q1WKU0 Putative RNA polymerase II 215 kD subunit (Fragment) n=2
Tax=melanogaster subgroup RepID=Q1WKU0_DROYA
Length = 766
Score = 55.1 bits (131), Expect = 3e-06
Identities = 49/150 (32%), Positives = 66/150 (44%), Gaps = 3/150 (2%)
Frame = +2
Query: 59 GYTPGREGQRTPGRAFDAAMTPTYAYSPAR--ARTPGGTAFSP-AYTGPGGFSPINATAS 229
G TP TP + TP Y P A TPGG +FSP A + G SP S
Sbjct: 639 GSTPSMTPPMTP---WVNCNTPRYFSPPGHVSAMTPGGPSFSPSAASDASGMSP-----S 690
Query: 230 FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAG 409
+SP A ++P P SP + P SP Y+ SP + P G +
Sbjct: 691 WSP------AHPGSSPSSPGPSMSP---YFPASPSVSPSYSPTSPNY---TASSPGGASP 738
Query: 410 AYAPASPAYMATSPGMGYSPSTPALAVSSP 499
Y+P+SP Y TSP Y+ ++P A ++P
Sbjct: 739 NYSPSSPNYSPTSP--LYASASPRYASTTP 766
[200][TOP]
>UniRef100_UPI0001A2C6C2 pygopus homolog 2 n=1 Tax=Danio rerio RepID=UPI0001A2C6C2
Length = 533
Score = 54.7 bits (130), Expect = 3e-06
Identities = 42/126 (33%), Positives = 50/126 (39%), Gaps = 11/126 (8%)
Frame = +2
Query: 158 PGGTAFSPAY-TGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSP 334
PGG F P+ G GG+ M G PGR R P G TP P
Sbjct: 72 PGGATFLPSPGAGGGGYGGPGRMGGGMGFMGGPGGPGSGQPGR----RPPFGPPTPNTGP 127
Query: 335 ASP-GYAAMSPRFGGGLGGGPAGGAGAYAPASPAYM--------ATSPGMGYSPS-TPAL 484
P G+ M P FGGG GGG GG G + P P+ PG G++P +P
Sbjct: 128 HHPLGFGGM-PGFGGG-GGGGGGGGGGFPPGGPSQFNMPPNFSPPMHPGQGFNPMLSPGA 185
Query: 485 AVSSPG 502
PG
Sbjct: 186 MGGGPG 191
[201][TOP]
>UniRef100_UPI0000DC19F8 UPI0000DC19F8 related cluster n=1 Tax=Rattus norvegicus
RepID=UPI0000DC19F8
Length = 417
Score = 54.7 bits (130), Expect = 3e-06
Identities = 61/179 (34%), Positives = 79/179 (44%), Gaps = 21/179 (11%)
Frame = +2
Query: 29 RSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-YSPARARTPGGTAFSPAYTGPGGF 205
R+P P +PGR +PGRA ++P A SP RA GT P G
Sbjct: 39 RAPVSP-GRAPVSPGRRAPVSPGRA---PVSPGRAPVSPGRAPVSPGTV--PVSPGRAPV 92
Query: 206 SPINATASFSPIMSSADAAGRA---------TPGR--MTPGRSPA--GRF--TPRMSPAS 340
SP A SP + + GRA +PGR ++PGR+P GR +P +P S
Sbjct: 93 SP--GRAPVSPGERAPVSPGRAPVSPGRAPVSPGRAPVSPGRAPVSPGRVPVSPGRAPVS 150
Query: 341 PGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGM-----GYSPSTPALAVSSPG 502
PG A +SP G A + AP SP + SPG G +P +P A SPG
Sbjct: 151 PGRAPVSP--------GRAPVSPGRAPVSPGTVPVSPGTVPVSPGRAPVSPGRAPVSPG 201
[202][TOP]
>UniRef100_Q1L8T6 Novel protein similar to vertebrate pygopus homolog 2 (Drosophila)
(PYGO2) n=1 Tax=Danio rerio RepID=Q1L8T6_DANRE
Length = 571
Score = 54.7 bits (130), Expect = 3e-06
Identities = 42/126 (33%), Positives = 50/126 (39%), Gaps = 11/126 (8%)
Frame = +2
Query: 158 PGGTAFSPAY-TGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSP 334
PGG F P+ G GG+ M G PGR R P G TP P
Sbjct: 72 PGGATFLPSPGAGGGGYGGPGRMGGGMGFMGGPGGPGSGQPGR----RPPFGPPTPNTGP 127
Query: 335 ASP-GYAAMSPRFGGGLGGGPAGGAGAYAPASPAYM--------ATSPGMGYSPS-TPAL 484
P G+ M P FGGG GGG GG G + P P+ PG G++P +P
Sbjct: 128 HHPLGFGGM-PGFGGG-GGGGGGGGGGFPPGGPSQFNMPPNFSPPMHPGQGFNPMLSPGA 185
Query: 485 AVSSPG 502
PG
Sbjct: 186 MGGGPG 191
[203][TOP]
>UniRef100_B4V7K0 DNA polymerase III subunits gamma and tau n=1 Tax=Streptomyces sp.
Mg1 RepID=B4V7K0_9ACTO
Length = 753
Score = 54.7 bits (130), Expect = 3e-06
Identities = 57/166 (34%), Positives = 69/166 (41%), Gaps = 16/166 (9%)
Frame = +2
Query: 8 AASARIARSPAMPESERGYTPGREGQRT----PGRAFDAAMT------PTYAYSPARART 157
AA+A +A PA + GY PG E PG AA P + PA A
Sbjct: 398 AAAAALAVPPAGAPA-MGYVPGPEAHGMAPAGPGGGVAAARAAVRGAGPEESAPPAPAAA 456
Query: 158 PGGTAFSPA-YTGPGGFSPINATASFSPIMSSADA---AGRATPGRMTPGRSPAGRFTPR 325
P A +PA P +P A A +P + A A A A PG PG G +
Sbjct: 457 PAPVAQAPAPVAAPAPVAPEPAPAPVAPPAAEAPAPASAPGAWPGAAKPGSGAPGAWPGA 516
Query: 326 MSPASPGYAAMSPRFGGGLG-GGPA-GGAGAYAPASPAYMATSPGM 457
+PA+P A G G PA A A APA+PA A SPGM
Sbjct: 517 AAPAAPAAGAWPSTAAPGTGPAAPAPAPAPAPAPAAPAPAAPSPGM 562
[204][TOP]
>UniRef100_Q75A34 DNA-directed RNA polymerase II subunit RPB1 n=1 Tax=Eremothecium
gossypii RepID=RPB1_ASHGO
Length = 1745
Score = 54.7 bits (130), Expect = 3e-06
Identities = 47/166 (28%), Positives = 75/166 (45%), Gaps = 8/166 (4%)
Frame = +2
Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY--T 190
SPA + Y+P ++ +P+Y+ YSP +P + SP+Y T
Sbjct: 1549 SPAYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPSYSPT---SPSYSPTSPSYSPT 1604
Query: 191 GPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPR 367
P +SP + + S SP S + T +P +P SP SP Y+ SP
Sbjct: 1605 SPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1663
Query: 368 FGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
+ + + +Y+P SP+Y TSP YSP++P+ + +SP Y
Sbjct: 1664 YSP-TSPSYSPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1706
Score = 54.3 bits (129), Expect = 4e-06
Identities = 50/164 (30%), Positives = 74/164 (45%), Gaps = 4/164 (2%)
Frame = +2
Query: 26 ARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTY-AYSPARARTPGGTAFSPAY--TGP 196
A SP +PG +PG +PT AYSP +P + SP+Y T P
Sbjct: 1521 ATSPFSGYGNGPTSPGFGDVSSPG------FSPTSPAYSPT---SPSYSPTSPSYSPTSP 1571
Query: 197 GGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFG 373
+SP + + S SP S + T +P +P SP SP Y+ SP +
Sbjct: 1572 S-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY- 1629
Query: 374 GGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
+ + +Y+P SP+Y TSP YSP++P+ + +SP Y
Sbjct: 1630 -------SPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1664
[205][TOP]
>UniRef100_UPI00005A0B25 PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide
A isoform 16 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B25
Length = 1752
Score = 54.3 bits (129), Expect = 4e-06
Identities = 45/164 (27%), Positives = 72/164 (43%), Gaps = 8/164 (4%)
Frame = +2
Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY--T 190
SP+ + Y+P ++ +P+Y+ YSP +P + SP+Y T
Sbjct: 1535 SPSYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPSYSPT---SPSYSPTSPSYSPT 1590
Query: 191 GPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPR 367
P +SP + + S SP S + T +P +P SP SP Y+ P
Sbjct: 1591 SPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPSRPN 1649
Query: 368 FGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSP 499
+ + +Y+P SP+Y TSP YSPS+P+ + +SP
Sbjct: 1650 Y--------TPTSPSYSPTSPSYSPTSPNYTYSPSSPSYSPTSP 1685
Score = 53.5 bits (127), Expect = 8e-06
Identities = 47/168 (27%), Positives = 73/168 (43%), Gaps = 10/168 (5%)
Frame = +2
Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY--T 190
SP+ + Y+P ++ +P+Y+ YSP +P + SP+Y T
Sbjct: 1556 SPSYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPSYSPT---SPSYSPTSPSYSPT 1611
Query: 191 GPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPR 367
P +SP + + S SP S + T +P R +P SP SP Y+ SP
Sbjct: 1612 SPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPSRPNYTPTSPSYSPTSPSYSPTSPN 1670
Query: 368 FGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPST--PALAVSSPGY 505
+ Y+P+SP+Y TSP YSP++ P + +SP Y
Sbjct: 1671 Y-------------TYSPSSPSYSPTSPNPKYSPTSPNPTYSPTSPKY 1705
[206][TOP]
>UniRef100_B0JZI5 Pygo2 protein n=1 Tax=Danio rerio RepID=B0JZI5_DANRE
Length = 561
Score = 54.3 bits (129), Expect = 4e-06
Identities = 42/126 (33%), Positives = 50/126 (39%), Gaps = 11/126 (8%)
Frame = +2
Query: 158 PGGTAFSPAY-TGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSP 334
PGG F P+ G GG+ M G PGR R P G TP P
Sbjct: 101 PGGATFLPSPGAGGGGYGGPGRMGGGMGFMGGPGGPGGGQPGR----RPPFGPPTPNTGP 156
Query: 335 ASP-GYAAMSPRFGGGLGGGPAGGAGAYAPASPAYM--------ATSPGMGYSPS-TPAL 484
P G+ M P FGGG GGG GG G + P P+ PG G++P +P
Sbjct: 157 HHPLGFGGM-PGFGGG-GGGGGGGGGGFPPGGPSQFNMPPNFSPPMHPGQGFNPMLSPGA 214
Query: 485 AVSSPG 502
PG
Sbjct: 215 MGGGPG 220
[207][TOP]
>UniRef100_B9PMD7 DNA-directed RNA polymerase n=2 Tax=Toxoplasma gondii
RepID=B9PMD7_TOXGO
Length = 1892
Score = 54.3 bits (129), Expect = 4e-06
Identities = 52/186 (27%), Positives = 74/186 (39%), Gaps = 28/186 (15%)
Frame = +2
Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARAR----TPGGTAFSPAYT--G 193
SP+ P+S G A D ++P S R R +P SP+Y+
Sbjct: 1633 SPSSPQSAYFQNDGSSS------AVDMVISPGGVGSDGRGRGGSYSPTSPTLSPSYSPSS 1686
Query: 194 PGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASP------GYAA 355
P +SP + ++SP +SA + PG GR+P F+P +P SP Y+
Sbjct: 1687 PPSYSP--TSPAYSP--TSALSIASPVPGVGGDGRTPLSPFSPSNNPMSPHFSASTSYSP 1742
Query: 356 MSPRFGGGLGGGPAGGAGAYAPASPAYMATSP----------------GMGYSPSTPALA 487
SP + + AY+P SP Y TSP G G P +P+
Sbjct: 1743 TSPVQQSNPTSPTSPYSPAYSPTSPRYSPTSPMYSPTFAPYSPQSPSYGAGQGPLSPSFT 1802
Query: 488 VSSPGY 505
V SP Y
Sbjct: 1803 VQSPRY 1808
[208][TOP]
>UniRef100_B6KEC6 DNA-directed RNA polymerase n=1 Tax=Toxoplasma gondii ME49
RepID=B6KEC6_TOXGO
Length = 1892
Score = 54.3 bits (129), Expect = 4e-06
Identities = 52/186 (27%), Positives = 74/186 (39%), Gaps = 28/186 (15%)
Frame = +2
Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARAR----TPGGTAFSPAYT--G 193
SP+ P+S G A D ++P S R R +P SP+Y+
Sbjct: 1633 SPSSPQSAYFQNDGSSS------AVDMVISPGGVGSDGRGRGGSYSPTSPTLSPSYSPSA 1686
Query: 194 PGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASP------GYAA 355
P +SP + ++SP +SA + PG GR+P F+P +P SP Y+
Sbjct: 1687 PPSYSP--TSPAYSP--TSALSIASPVPGVGGDGRTPLSPFSPSNNPMSPHFSASTSYSP 1742
Query: 356 MSPRFGGGLGGGPAGGAGAYAPASPAYMATSP----------------GMGYSPSTPALA 487
SP + + AY+P SP Y TSP G G P +P+
Sbjct: 1743 TSPVQQSNPTSPTSPYSPAYSPTSPRYSPTSPMYSPTFAPYSPQSPSYGAGQGPLSPSFT 1802
Query: 488 VSSPGY 505
V SP Y
Sbjct: 1803 VQSPRY 1808
[209][TOP]
>UniRef100_A4RMP1 DNA-directed RNA polymerase n=1 Tax=Magnaporthe grisea
RepID=A4RMP1_MAGGR
Length = 1757
Score = 54.3 bits (129), Expect = 4e-06
Identities = 47/142 (33%), Positives = 64/142 (45%), Gaps = 12/142 (8%)
Frame = +2
Query: 113 AMTPTYAYSPARARTPGGTA-FSPAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMT 289
+M P + + R +P T+ SP G G +SP + A +SP D GR G +
Sbjct: 1550 SMNPYGSGTSPRPTSPFSTSPTSPFSAGYGSYSPTSPMAGYSPTSPMMDG-GRY--GASS 1606
Query: 290 PGRSPAGRFTPRMSPASP----------GYAAMSPRFGGGLGGGPAGGAGAYAPASPAYM 439
P SP+ +P P SP GY+ SP + G P GG Y+P SPA
Sbjct: 1607 PSFSPS---SPSFQPTSPIMRHGAGDSMGYSPTSPTYQPG---SPTGGDNHYSPTSPAQF 1660
Query: 440 ATSPGMG-YSPSTPALAVSSPG 502
SP YSP++P+ SPG
Sbjct: 1661 GASPTSPLYSPASPSF---SPG 1679
[210][TOP]
>UniRef100_P35084 DNA-directed RNA polymerase II subunit rpb1 n=1 Tax=Dictyostelium
discoideum RepID=RPB1_DICDI
Length = 1727
Score = 54.3 bits (129), Expect = 4e-06
Identities = 50/165 (30%), Positives = 74/165 (44%), Gaps = 7/165 (4%)
Frame = +2
Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY--T 190
SP+ + Y+P +P F + +P+Y+ YSP +P + SP+Y T
Sbjct: 1578 SPSYSPTSPSYSPTSPSY-SPTSPFYSPTSPSYSPTSPSYSPT---SPSYSPTSPSYSPT 1633
Query: 191 GPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRF 370
P +SP + S+SP S +P SP +P SP SP Y+ SP
Sbjct: 1634 SPS-YSP--TSPSYSPTSPSYSPT--------SPSYSPT---SPSYSPTSPSYSPTSP-- 1677
Query: 371 GGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
+Y+P SP+Y +SP YSPS+P+ + SSP Y
Sbjct: 1678 -------------SYSPTSPSYSPSSP--SYSPSSPSYSPSSPSY 1707
[211][TOP]
>UniRef100_UPI00005A0B23 PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide
A isoform 14 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B23
Length = 1653
Score = 53.9 bits (128), Expect = 6e-06
Identities = 50/190 (26%), Positives = 77/190 (40%), Gaps = 30/190 (15%)
Frame = +2
Query: 26 ARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARAR----TPGGTAFS 178
A SP+ + Y P G TP + +P+Y+ YSP +P + S
Sbjct: 1452 AMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTS 1511
Query: 179 PAY--TGPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGY 349
P+Y T P +SP + + S SP S + T +P +P SP SP Y
Sbjct: 1512 PSYSPTSPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1570
Query: 350 AAMSPRFG------GGLGGGPAGGAGAYAPASPAYMATSPGMG------------YSPST 475
+ SP + + + +Y+P SP+Y TSP YSP++
Sbjct: 1571 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPSRPNYTPTSPSYSPTS 1630
Query: 476 PALAVSSPGY 505
P+ + +SP Y
Sbjct: 1631 PSYSPTSPNY 1640
[212][TOP]
>UniRef100_Q89X06 Blr0521 protein n=1 Tax=Bradyrhizobium japonicum RepID=Q89X06_BRAJA
Length = 745
Score = 53.9 bits (128), Expect = 6e-06
Identities = 56/181 (30%), Positives = 69/181 (38%), Gaps = 19/181 (10%)
Frame = +2
Query: 8 AASARIARSPAMPESERGY-TPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPA 184
A +A PA P + G P TP A A PT +PA TPG
Sbjct: 195 ATPTPVAPPPAAPTARPGSPAPAATPAPTPTPAPTATPAPTA--TPAPGSTPGAPPAGRP 252
Query: 185 YTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSP 364
P G P + A+ SP A A TP P+GR P +PA PG A +P
Sbjct: 253 GAPPPGVRPGSPPAAGSPPAPGATPAPTTTPAPGGTATPPSGRPGPASTPA-PGAATPAP 311
Query: 365 ---------------RFGGGLGGGPAGG---AGAYAPASPAYMATSPGMGYSPSTPALAV 490
R G G GP GG AGA A +PA + G+ P+ PA A
Sbjct: 312 TATPAPGGALTPPPGRPGAGPTPGPQGGTPPAGAPAAGTPAAPPQAGGLPARPAAPAGAA 371
Query: 491 S 493
+
Sbjct: 372 A 372
[213][TOP]
>UniRef100_Q9BIU8 Flagelliform silk protein (Fragment) n=1 Tax=Argiope trifasciata
RepID=Q9BIU8_ARGTR
Length = 1002
Score = 53.9 bits (128), Expect = 6e-06
Identities = 44/137 (32%), Positives = 49/137 (35%)
Frame = +2
Query: 44 PESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGFSPINAT 223
P G+ PG G PG A Y P G F P GPGG P A
Sbjct: 731 PGGAGGFGPGGAGGFGPGGAGGFGPGGAGGYGPGGVGPGGAGGFGPGGVGPGGSGPGGAG 790
Query: 224 ASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGG 403
P+ D + PG P G A PG A P GGG G GP GG
Sbjct: 791 GE-GPVTVDVDVSVGG-----APGGGPGG--------AGPGGAGFGP--GGGAGFGPGGG 834
Query: 404 AGAYAPASPAYMATSPG 454
AG + P A + PG
Sbjct: 835 AG-FGPGGAAGGPSGPG 850
Score = 53.5 bits (127), Expect = 8e-06
Identities = 44/137 (32%), Positives = 48/137 (35%)
Frame = +2
Query: 44 PESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGFSPINAT 223
P G+ PG G PG A Y P G F P GPGG P A
Sbjct: 463 PGGAGGFGPGGAGGFGPGGAGGFGPAGAGGYGPGGVGPGGAGGFGPGGVGPGGSGPGGAG 522
Query: 224 ASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGG 403
P+ D + PG P G A PG A P GGG G GP GG
Sbjct: 523 GE-GPVTVDVDVSVGG-----APGGGPGG--------AGPGGAGFGP--GGGAGFGPGGG 566
Query: 404 AGAYAPASPAYMATSPG 454
AG + P A PG
Sbjct: 567 AG-FGPGGAAGGPGGPG 582
[214][TOP]
>UniRef100_O96446 DNA-directed RNA polymerase n=1 Tax=Vairimorpha necatrix
RepID=O96446_9MICR
Length = 1605
Score = 53.9 bits (128), Expect = 6e-06
Identities = 44/145 (30%), Positives = 69/145 (47%), Gaps = 2/145 (1%)
Frame = +2
Query: 77 EGQR-TPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGFSPINATAS-FSPIMSS 250
EG R P + + +PTY+ + + +P +SP T P +SP + T S SP S
Sbjct: 1456 EGNRYAPKTSLYSPTSPTYSPT-SPTYSPTSPTYSP--TSPT-YSPTSPTYSPTSPTYSP 1511
Query: 251 ADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASP 430
+ T +P +P SP SP Y+ SP + + + +Y+P SP
Sbjct: 1512 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSP 1563
Query: 431 AYMATSPGMGYSPSTPALAVSSPGY 505
+Y TSP YSP++P+ + +SP Y
Sbjct: 1564 SYSPTSP--SYSPTSPSYSPTSPSY 1586
[215][TOP]
>UniRef100_C4R4Y0 DNA-directed RNA polymerase n=1 Tax=Pichia pastoris GS115
RepID=C4R4Y0_PICPG
Length = 1743
Score = 53.9 bits (128), Expect = 6e-06
Identities = 32/93 (34%), Positives = 50/93 (53%), Gaps = 2/93 (2%)
Frame = +2
Query: 233 SPIMSSADAAGRATPG--RMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGA 406
SP ++ +PG +PG +P +PR SP SPGY+ SP + + +
Sbjct: 1523 SPYQPTSPGLSATSPGFAPTSPGFAPT---SPRYSPTSPGYSPTSPSY--------SPTS 1571
Query: 407 GAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
+Y+P SP+Y TSP YSP++P+ + +SP Y
Sbjct: 1572 PSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1602
[216][TOP]
>UniRef100_UPI0000E48096 PREDICTED: hypothetical protein n=1 Tax=Strongylocentrotus purpuratus
RepID=UPI0000E48096
Length = 2055
Score = 53.5 bits (127), Expect = 8e-06
Identities = 48/144 (33%), Positives = 61/144 (42%), Gaps = 6/144 (4%)
Frame = +2
Query: 68 PGREGQRTPGRA---FDAAMTPTYAYSP-ARARTPGGTAFSPAYTGPGGFSPINATASFS 235
P R G P RA + A P +P A A P F+PA P +P A S
Sbjct: 816 PSRPGYNPPARAPAPYPPARGPVPRPAPRAPAAPPRAPGFAPAPNAPSPHNPDQRYAGGS 875
Query: 236 PIMSSADAAGRATPGRM-TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 412
+PG PG +P P +P +PGYA + PR G P G
Sbjct: 876 SGSEHNIPGYAPSPGAPGAPGYAP-----PPPAPRAPGYAPLPPRRAAP-GFAPPG---- 925
Query: 413 YAPASPAYMATS-PGMGYSPSTPA 481
+AP +P A S PG+GY+PS PA
Sbjct: 926 FAPPAPRQFAPSAPGVGYAPSAPA 949
[217][TOP]
>UniRef100_UPI0000EB0AC6 Collagen alpha-1(XVII) chain (Bullous pemphigoid antigen 2) (180 kDa
bullous pemphigoid antigen 2) n=1 Tax=Canis lupus
familiaris RepID=UPI0000EB0AC6
Length = 1471
Score = 53.5 bits (127), Expect = 8e-06
Identities = 49/182 (26%), Positives = 66/182 (36%), Gaps = 28/182 (15%)
Frame = -3
Query: 483 KAGVDGEYPIPGEVAM*AGEAGAYAPAPPAGP----PPSPPPKRGLI--AA*PG--EAGD 328
+ G GE PG + G + P PP P PP PP G + A PG E D
Sbjct: 792 RPGAKGEPGAPGRIMTSEGSSTITVPGPPGPPGAMGPPGPPGAPGPVGPAGLPGQQEGVD 851
Query: 327 IRGVKRPAGLRPGVIRPGVARPAASADDMMGENEAVALMGLN------------------ 202
+RG P G PG P ++ P + + A+ +G +
Sbjct: 852 LRGPPGPPG-PPGPPGPSISGPPGPCTGFLARSLALQSLGGSFSSPGSLLSNSETYFSGP 910
Query: 201 --PPGPVYAGENAVPPGVRARAGEYA*VGVMAASKARPGVRWPSRPGV*PRSDSGMAGDR 28
PPGP + PPG R GE G + + G+ PG PR G GD
Sbjct: 911 PGPPGPPGPKGDQGPPGPRGHQGEQGPPGFSGSGSSSLGLNLQGPPG--PRGPKGDKGDP 968
Query: 27 AI 22
+
Sbjct: 969 GV 970
[218][TOP]
>UniRef100_Q9RKR9 Putative multi-domain regulatory protein n=1 Tax=Streptomyces
coelicolor RepID=Q9RKR9_STRCO
Length = 1334
Score = 53.5 bits (127), Expect = 8e-06
Identities = 57/181 (31%), Positives = 75/181 (41%), Gaps = 19/181 (10%)
Frame = +2
Query: 14 SARIARSPAMPESER-------GYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTA 172
S R A + A E+ R G PG E + + TPT P R+RTPG T+
Sbjct: 212 SGRTAEALAAYEAVRRLLADRLGTDPGPELRTLHAELLSPSPTPT----PGRSRTPGWTS 267
Query: 173 FSPAYTGPGGFSPIN----ATASFSPIMSSADAAGRA----TPGRMTPGRSPAGRFTPRM 328
+G G S + A A+ P +S A+G A + G PG PA P
Sbjct: 268 GPGPASGAGAASGTDVASGAGAASGPDPASGPASGPAVAPGSGGGPAPGWWPAPGTAPGS 327
Query: 329 SPASP----GYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSS 496
S A P A +P G G A AG APA P +PG Y+P T +A ++
Sbjct: 328 STAPPHDTASAADTAPAPGPTSAPGTAPAAGTAAPA-PGTAGPAPGTSYAPGTAPVAGTT 386
Query: 497 P 499
P
Sbjct: 387 P 387
[219][TOP]
>UniRef100_Q4KQZ4 CT099 (Fragment) n=1 Tax=Solanum habrochaites RepID=Q4KQZ4_SOLHA
Length = 305
Score = 53.5 bits (127), Expect = 8e-06
Identities = 40/139 (28%), Positives = 63/139 (45%), Gaps = 7/139 (5%)
Frame = +2
Query: 59 GYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGFSPINATA-SFS 235
G P G TP +P A +P+R + GT +P+ P G SP A++ + +
Sbjct: 104 GVAPPSNGSTTPPSTPSGGSSP--AAAPSRGSSTPGTPSAPSANAPAGSSPPGASSPNGA 161
Query: 236 PIMSSADAAGRATPGRMTPGRSPAGRFT--PRMSPASPGYAAMSPRFGGGLGGGPAGGAG 409
P+ + A + ++P SP T P MSP + G ++ +P L GGP+ G+G
Sbjct: 162 PVSTPAGKSPTSSPTPSGSTASPPSPATVVPAMSPVANGPSSSTPGSSSPLAGGPSSGSG 221
Query: 410 ----AYAPASPAYMATSPG 454
A P+ A T+ G
Sbjct: 222 IAPSADGPSGSAIAPTADG 240
[220][TOP]
>UniRef100_Q4KQZ0 CT099 (Fragment) n=1 Tax=Solanum habrochaites RepID=Q4KQZ0_SOLHA
Length = 305
Score = 53.5 bits (127), Expect = 8e-06
Identities = 40/139 (28%), Positives = 63/139 (45%), Gaps = 7/139 (5%)
Frame = +2
Query: 59 GYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGFSPINATA-SFS 235
G P G TP +P A +P+R + GT +P+ P G SP A++ + +
Sbjct: 104 GVAPPSNGSTTPPSTPSGGSSP--AAAPSRGSSTPGTPSAPSANAPAGSSPPGASSPNGA 161
Query: 236 PIMSSADAAGRATPGRMTPGRSPAGRFT--PRMSPASPGYAAMSPRFGGGLGGGPAGGAG 409
P+ + A + ++P SP T P MSP + G ++ +P L GGP+ G+G
Sbjct: 162 PVSTPAGKSPTSSPTPSGSTASPPSPATVVPAMSPVANGPSSSTPGSSSPLAGGPSSGSG 221
Query: 410 ----AYAPASPAYMATSPG 454
A P+ A T+ G
Sbjct: 222 IAPSADGPSGSAIAPTADG 240
[221][TOP]
>UniRef100_A4RRF2 Predicted protein n=1 Tax=Ostreococcus lucimarinus CCE9901
RepID=A4RRF2_OSTLU
Length = 1000
Score = 53.5 bits (127), Expect = 8e-06
Identities = 55/175 (31%), Positives = 71/175 (40%), Gaps = 15/175 (8%)
Frame = +2
Query: 26 ARSPAMPESERGYTPGREGQ--RTPG----RAFDAAMTP--------TYAYSPARARTPG 163
A A P TPG G TP AF AA TP T A+ A A +P
Sbjct: 326 ATPSASPFGAAPSTPGAFGAPASTPAFGASGAFGAAPTPSAFGAPSSTPAFGAAPASSPF 385
Query: 164 GTAFSPAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASP 343
G A PA P G +P +P + AA + G S G +P++P
Sbjct: 386 GAA--PAAASPFGAAPSTPAFGAAPTPGAFGAAPSSGGGLFGAAPSTGGGLFGASAPSTP 443
Query: 344 G-YAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
G + A +P GG PAGG AP++PA G +TP A S+PG+
Sbjct: 444 GAFGASTPAPGGFGAPKPAGGLFGAAPSTPATGGLF-GASTGATTPGFAGSTPGF 497
[222][TOP]
>UniRef100_Q9C428 DNA-directed RNA polymerase (Fragment) n=1 Tax=Monoblepharis
macrandra RepID=Q9C428_9FUNG
Length = 1603
Score = 53.5 bits (127), Expect = 8e-06
Identities = 60/186 (32%), Positives = 82/186 (44%), Gaps = 26/186 (13%)
Frame = +2
Query: 26 ARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-YSPARARTPGGTAFSPAYTGPGG 202
ARS YT G +TP A M+P+ A + PA +PGG Y G
Sbjct: 1405 ARSATGGLYTNSYTADFSGGKTPDHR--APMSPSGAQFYPA---SPGGAP----YENYPG 1455
Query: 203 FSPINATASFSPI-MSSADAAGRATPGRMTPGRSPAG---RFTPRM-------SPASPGY 349
P+ FSPI + S GR TPG M+ G+SP R PR+ SP+SP Y
Sbjct: 1456 DQPM-----FSPIGVDSGRDTGRWTPG-MSGGQSPYASTHRCDPRLMNKRSLRSPSSPVY 1509
Query: 350 AAMSPRFG--------------GGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALA 487
+ FG G + + +Y+P SP+Y TSP YSP++P+ +
Sbjct: 1510 SMWLASFGLLQPFLIVRCFGVISPTSPGYSPTSPSYSPTSPSYTPTSP--SYSPTSPSYS 1567
Query: 488 VSSPGY 505
+SP Y
Sbjct: 1568 PTSPSY 1573
[223][TOP]
>UniRef100_A1YIA7 DNA-directed RNA polymerase (Fragment) n=1 Tax=Pichia kudriavzevii
RepID=A1YIA7_ISSOR
Length = 1647
Score = 53.5 bits (127), Expect = 8e-06
Identities = 50/163 (30%), Positives = 72/163 (44%), Gaps = 3/163 (1%)
Frame = +2
Query: 26 ARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTY-AYSPAR-ARTPGGTAFSPAYTGPG 199
A SP+ + Y P A+ +PT AYSP A +P A+SP T P
Sbjct: 1458 ATSPSYGPTSPSYGPTSPSYSPTSPAY----SPTSPAYSPTSPAYSPTSPAYSP--TSPA 1511
Query: 200 GFSPIN-ATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGG 376
+SP + A + SP S + T +P +P SP SP Y+ SP++
Sbjct: 1512 -YSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPQY-- 1568
Query: 377 GLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
+ + Y+P SP Y TSP YSP++P + +SP Y
Sbjct: 1569 ------SPTSPQYSPTSPQYSPTSP--QYSPTSPQYSPTSPQY 1603
Score = 53.5 bits (127), Expect = 8e-06
Identities = 49/165 (29%), Positives = 74/165 (44%), Gaps = 7/165 (4%)
Frame = +2
Query: 32 SPAMPESERGYTPGREGQRTPGRAFDA---AMTPTY-AYSPARARTPGGTAFSPAY--TG 193
SPA + Y+P A+ A +PT +YSP +P + SP+Y T
Sbjct: 1495 SPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPT---SPSYSPTSPSYSPTS 1551
Query: 194 PGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRF 370
P +SP + + S SP S T + +P +P+ SP SP Y+ SP++
Sbjct: 1552 PS-YSPTSPSYSPTSPQYSPTSPQYSPTSPQYSPTSPQYSPTSPQYSPTSPQYSPTSPQY 1610
Query: 371 GGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
+ + Y+P SP Y TSP YSP++P + +SP Y
Sbjct: 1611 --------SPTSPQYSPTSPQYSPTSP--QYSPTSPQYSPTSPSY 1645