[UP]
[1][TOP]
>UniRef100_O04142 DNA-directed RNA polymerase (Fragment) n=1 Tax=Porphyra yezoensis
RepID=O04142_PORYE
Length = 1685
Score = 306 bits (784), Expect = 5e-82
Identities = 158/158 (100%), Positives = 158/158 (100%)
Frame = +3
Query: 3 AVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREML 182
AVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREML
Sbjct: 892 AVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREML 951
Query: 183 PPDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEI 362
PPDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEI
Sbjct: 952 PPDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEI 1011
Query: 363 ENRFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
ENRFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA
Sbjct: 1012 ENRFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 1049
[2][TOP]
>UniRef100_O09451 DNA-directed RNA polymerase (Fragment) n=1 Tax=Bonnemaisonia hamifera
RepID=O09451_9FLOR
Length = 1732
Score = 155 bits (392), Expect = 1e-36
Identities = 82/161 (50%), Positives = 108/161 (67%), Gaps = 3/161 (1%)
Frame = +3
Query: 3 AVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREML 182
AVN++R+IWNAK+ ++ + SDL P ++++GV +LL RTRVL ++A ++ A E
Sbjct: 875 AVNVDRVIWNAKQEHNIHADSVSDLKPDQVLKGVSMLLKRTRVLVLGDEAALENAALEPG 934
Query: 183 PPDGSASGPQDEA---LKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLL 353
+ P DE + L + AQ NATLLFQ+H+R+ LA K ++ HRLT KAF WLL
Sbjct: 935 MEEDDEGNPIDEKPTMVDPLMKEAQENATLLFQIHMRSMLACKKLIQLHRLTFKAFLWLL 994
Query: 354 IEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
E+ENRF GE +GA AAQSIGEPATQMTLNTFHYA
Sbjct: 995 GEVENRFMMCRVAPGENIGAIAAQSIGEPATQMTLNTFHYA 1035
[3][TOP]
>UniRef100_Q9AXN0 DNA-directed RNA polymerase n=1 Tax=Glaucosphaera vacuolata
RepID=Q9AXN0_9RHOD
Length = 1746
Score = 151 bits (381), Expect = 3e-35
Identities = 85/171 (49%), Positives = 109/171 (63%), Gaps = 13/171 (7%)
Frame = +3
Query: 3 AVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLT-------------SD 143
AVNI+RLIWN K +F++RQ+ SDL+P I++GV++LL R V+ D
Sbjct: 951 AVNIDRLIWNVKTLFNIRQDSVSDLNPRDILKGVQILLSRCNVVALPPKSIKLLDEGDGD 1010
Query: 144 EDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHR 323
+ AEVD + ++L+ AQ NATLL+ +H+RA LASKV+L E+R
Sbjct: 1011 QVAEVDT----------------NSVSRQLAVEAQENATLLWSIHIRAFLASKVILKEYR 1054
Query: 324 LTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
L +KAF LL EIENRF A P GEM+GA A QSIGEPATQMTLNTFH+A
Sbjct: 1055 LDKKAFMHLLGEIENRFLHAKCPPGEMIGAVAPQSIGEPATQMTLNTFHFA 1105
[4][TOP]
>UniRef100_Q9AXN1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Botryocladia
uvarioides RepID=Q9AXN1_9FLOR
Length = 1712
Score = 147 bits (371), Expect = 4e-34
Identities = 79/158 (50%), Positives = 108/158 (68%)
Frame = +3
Query: 3 AVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREML 182
AVNI+R+IWNAK+ ++R + SDL+P ++ +G+++LL RTRV+ +D + + + +
Sbjct: 876 AVNIDRIIWNAKQAHNIRPDSVSDLTPVQVWKGIKMLLKRTRVVEIGDDQDDEDVDDGVT 935
Query: 183 PPDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEI 362
+G + A ET Q NAT++FQ+HVR+ LA K V+ HRL AF W+L EI
Sbjct: 936 DENGEMIDRKPVADPLTLET-QENATMIFQIHVRSMLACKQVMVRHRLDINAFLWILGEI 994
Query: 363 ENRFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
ENRF A+A GE +GA AAQSIGEPATQMTLNTFHYA
Sbjct: 995 ENRFLGAIAAPGENIGAIAAQSIGEPATQMTLNTFHYA 1032
[5][TOP]
>UniRef100_Q30BD9 DNA-directed RNA polymerase n=1 Tax=Glaucocystis nostochinearum
RepID=Q30BD9_9EUKA
Length = 1852
Score = 140 bits (353), Expect = 4e-32
Identities = 80/157 (50%), Positives = 99/157 (63%)
Frame = +3
Query: 6 VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLP 185
VN++RLIWNA++IF + SDL P I++GV LL + V+ ++ V+A
Sbjct: 968 VNLKRLIWNAQKIFHIDVRKPSDLDPVDIIKGVNLLTKQLVVIPGEDPLSVEA------- 1020
Query: 186 PDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIE 365
Q NAT+LFQ+ VR+ LASK VL+E+RLT AF WLL EIE
Sbjct: 1021 --------------------QANATMLFQILVRSCLASKRVLTEYRLTSHAFEWLLGEIE 1060
Query: 366 NRFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
+RF QA+A GEMVGA AAQSIGEPATQMTLNTFHYA
Sbjct: 1061 SRFLQAIANPGEMVGAIAAQSIGEPATQMTLNTFHYA 1097
[6][TOP]
>UniRef100_Q84KP6 DNA-directed RNA polymerase n=1 Tax=Cyanidioschyzon merolae
RepID=Q84KP6_CYAME
Length = 1819
Score = 137 bits (346), Expect = 3e-31
Identities = 79/157 (50%), Positives = 95/157 (60%)
Frame = +3
Query: 6 VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLP 185
VN++RLI N + IF ++ + SDL P +I++GV +LL R V+ D+
Sbjct: 972 VNVQRLIQNCRSIFGIQHDTLSDLHPRQIIQGVRVLLQRCVVVPGDD------------- 1018
Query: 186 PDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIE 365
ELS AQ NA LLF HVRA LA+K VL HRL KAF WLL EIE
Sbjct: 1019 --------------ELSREAQRNAVLLFAAHVRAELATKRVLQIHRLNSKAFAWLLGEIE 1064
Query: 366 NRFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
RF +A A GEMVGA AAQS+GEPATQMTLNTFH+A
Sbjct: 1065 TRFVRARATPGEMVGAVAAQSLGEPATQMTLNTFHFA 1101
[7][TOP]
>UniRef100_UPI00019270E9 PREDICTED: similar to DNA-directed RNA polymerase II subunit RPB1
isoform 2 n=1 Tax=Hydra magnipapillata
RepID=UPI00019270E9
Length = 2014
Score = 135 bits (339), Expect = 2e-30
Identities = 73/157 (46%), Positives = 99/157 (63%)
Frame = +3
Query: 6 VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLP 185
V + RLIWN++++F V ++DLSP K++ ++ L R V+ ++
Sbjct: 981 VKLSRLIWNSQKMFKVNLRAQTDLSPLKVINDIKDLTKRLLVVKGED------------- 1027
Query: 186 PDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIE 365
+LS+ AQLNAT+LFQ+H+R++L SK V+ E RLT +AF WLL E+E
Sbjct: 1028 --------------KLSKEAQLNATMLFQIHLRSTLCSKRVIEEFRLTSEAFDWLLGEVE 1073
Query: 366 NRFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
+RF A A GEMVGA AAQS+GEPATQMTLNTFHYA
Sbjct: 1074 SRFNLAQAQPGEMVGALAAQSLGEPATQMTLNTFHYA 1110
[8][TOP]
>UniRef100_UPI00019270BB PREDICTED: similar to DNA-directed RNA polymerase II subunit RPB1
isoform 1 n=1 Tax=Hydra magnipapillata
RepID=UPI00019270BB
Length = 2041
Score = 135 bits (339), Expect = 2e-30
Identities = 73/157 (46%), Positives = 99/157 (63%)
Frame = +3
Query: 6 VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLP 185
V + RLIWN++++F V ++DLSP K++ ++ L R V+ ++
Sbjct: 982 VKLSRLIWNSQKMFKVNLRAQTDLSPLKVINDIKDLTKRLLVVKGED------------- 1028
Query: 186 PDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIE 365
+LS+ AQLNAT+LFQ+H+R++L SK V+ E RLT +AF WLL E+E
Sbjct: 1029 --------------KLSKEAQLNATMLFQIHLRSTLCSKRVIEEFRLTSEAFDWLLGEVE 1074
Query: 366 NRFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
+RF A A GEMVGA AAQS+GEPATQMTLNTFHYA
Sbjct: 1075 SRFNLAQAQPGEMVGALAAQSLGEPATQMTLNTFHYA 1111
[9][TOP]
>UniRef100_A9QMG4 RNA polymerase 2 (Fragment) n=1 Tax=Pelodera strongyloides
dermatitica RepID=A9QMG4_9PELO
Length = 478
Score = 132 bits (332), Expect = 1e-29
Identities = 71/156 (45%), Positives = 95/156 (60%)
Frame = +3
Query: 9 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
N++RLIWNA++IF V S L+P K+V GV+ L H+ ++ D+
Sbjct: 173 NLQRLIWNAQKIFKVETRKPSSLNPLKVVSGVKELSHKLVIVCGDD-------------- 218
Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
+S+ AQ NATLL + +R++L SK + +HRL + F WLL EIE+
Sbjct: 219 -------------RISKQAQYNATLLMNILIRSTLCSKQMAEKHRLNEEGFEWLLGEIEH 265
Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
RF QA+A GEMVGA AAQS+GEPATQMTLNTFH+A
Sbjct: 266 RFNQAIAQPGEMVGALAAQSLGEPATQMTLNTFHFA 301
[10][TOP]
>UniRef100_A9QMF0 DNA-directed RNA polymerase (Fragment) n=1 Tax=Pelodera
strongyloides dermatitica RepID=A9QMF0_9PELO
Length = 633
Score = 132 bits (332), Expect = 1e-29
Identities = 71/156 (45%), Positives = 95/156 (60%)
Frame = +3
Query: 9 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
N++RLIWNA++IF V S L+P K+V GV+ L H+ ++ D+
Sbjct: 192 NLQRLIWNAQKIFKVETRKPSSLNPLKVVSGVKELSHKLVIVCGDD-------------- 237
Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
+S+ AQ NATLL + +R++L SK + +HRL + F WLL EIE+
Sbjct: 238 -------------RISKQAQYNATLLMNILIRSTLCSKQMAEKHRLNEEGFEWLLGEIEH 284
Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
RF QA+A GEMVGA AAQS+GEPATQMTLNTFH+A
Sbjct: 285 RFNQAIAQPGEMVGALAAQSLGEPATQMTLNTFHFA 320
[11][TOP]
>UniRef100_UPI000179348F PREDICTED: similar to DNA-directed RNA polymerase II subunit RPB1
(RNA polymerase II subunit B1) (DNA-directed RNA
polymerase III largest subunit) n=1 Tax=Acyrthosiphon
pisum RepID=UPI000179348F
Length = 1862
Score = 131 bits (330), Expect = 2e-29
Identities = 74/156 (47%), Positives = 99/156 (63%)
Frame = +3
Query: 9 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
N++R+IWN ++IF + + +DL+P K+V GV+ LL + V+ + ED
Sbjct: 975 NLKRMIWNVQKIFHINKRGPTDLNPIKVVNGVKKLLDKC-VIVAGED------------- 1020
Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
ELS+ A NATLLFQ VR++L +K+V RL+ +AF WL+ EIEN
Sbjct: 1021 -------------ELSKKANKNATLLFQCLVRSTLCTKLVSENFRLSSEAFEWLVGEIEN 1067
Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
RF+QA A GEMVGA AAQS+GEPATQMTLNTFH+A
Sbjct: 1068 RFKQAQAQPGEMVGALAAQSLGEPATQMTLNTFHFA 1103
[12][TOP]
>UniRef100_B4MAN9 DNA-directed RNA polymerase n=1 Tax=Drosophila virilis
RepID=B4MAN9_DROVI
Length = 1889
Score = 131 bits (330), Expect = 2e-29
Identities = 71/156 (45%), Positives = 98/156 (62%)
Frame = +3
Query: 9 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
N++R+IWN ++IF + + +DLSP +++RGV+ LL R ++T ++
Sbjct: 974 NLQRMIWNVQKIFHINKRLPTDLSPMRVIRGVKGLLERCVIVTGND-------------- 1019
Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
+S+ A NATLLFQ +R++L +K V E RL+ +AF WL+ EIE
Sbjct: 1020 -------------RISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLIGEIET 1066
Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
RFQQA A GEMVGA AAQS+GEPATQMTLNTFH+A
Sbjct: 1067 RFQQAQANPGEMVGALAAQSLGEPATQMTLNTFHFA 1102
[13][TOP]
>UniRef100_B4L732 DNA-directed RNA polymerase n=1 Tax=Drosophila mojavensis
RepID=B4L732_DROMO
Length = 1889
Score = 131 bits (330), Expect = 2e-29
Identities = 71/156 (45%), Positives = 98/156 (62%)
Frame = +3
Query: 9 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
N++R+IWN ++IF + + +DLSP +++RGV+ LL R ++T ++
Sbjct: 974 NLQRMIWNVQKIFHINKRLPTDLSPMRVIRGVKGLLERCVIVTGND-------------- 1019
Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
+S+ A NATLLFQ +R++L +K V E RL+ +AF WL+ EIE
Sbjct: 1020 -------------RISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLIGEIET 1066
Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
RFQQA A GEMVGA AAQS+GEPATQMTLNTFH+A
Sbjct: 1067 RFQQAQANPGEMVGALAAQSLGEPATQMTLNTFHFA 1102
[14][TOP]
>UniRef100_B4JXA6 DNA-directed RNA polymerase n=1 Tax=Drosophila grimshawi
RepID=B4JXA6_DROGR
Length = 1889
Score = 131 bits (330), Expect = 2e-29
Identities = 71/156 (45%), Positives = 98/156 (62%)
Frame = +3
Query: 9 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
N++R+IWN ++IF + + +DLSP +++RGV LL+R ++T ++
Sbjct: 974 NLQRMIWNVQKIFHINKRLPTDLSPMRVIRGVSDLLNRCVIVTGND-------------- 1019
Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
+S+ A NATLLFQ +R++L +K V E RL+ +AF WL+ EIE
Sbjct: 1020 -------------RISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLIGEIET 1066
Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
RFQQA A GEMVGA AAQS+GEPATQMTLNTFH+A
Sbjct: 1067 RFQQAQANPGEMVGALAAQSLGEPATQMTLNTFHFA 1102
[15][TOP]
>UniRef100_UPI0000E12351 Os05g0151000 n=1 Tax=Oryza sativa Japonica Group RepID=UPI0000E12351
Length = 2085
Score = 131 bits (329), Expect = 3e-29
Identities = 70/157 (44%), Positives = 96/157 (61%)
Frame = +3
Query: 6 VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLP 185
VN++RLIWNA++ F + SD+ P +IV ++ L R +V+ D+D ++A
Sbjct: 978 VNLKRLIWNAQKTFKIDLRRPSDMHPMEIVDAIDKLQERLKVVPGDDDISIEA------- 1030
Query: 186 PDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIE 365
Q NATL F + +R++ ASK VL E+RLT++AF W++ EIE
Sbjct: 1031 --------------------QKNATLFFNILLRSTFASKRVLKEYRLTKEAFEWVIGEIE 1070
Query: 366 NRFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
+RF Q+L GEM+G AAQSIGEPATQMTLNTFHYA
Sbjct: 1071 SRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYA 1107
[16][TOP]
>UniRef100_Q5WMZ9 DNA-directed RNA polymerase n=1 Tax=Oryza sativa Japonica Group
RepID=Q5WMZ9_ORYSJ
Length = 1741
Score = 131 bits (329), Expect = 3e-29
Identities = 70/157 (44%), Positives = 96/157 (61%)
Frame = +3
Query: 6 VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLP 185
VN++RLIWNA++ F + SD+ P +IV ++ L R +V+ D+D ++A
Sbjct: 925 VNLKRLIWNAQKTFKIDLRRPSDMHPMEIVDAIDKLQERLKVVPGDDDISIEA------- 977
Query: 186 PDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIE 365
Q NATL F + +R++ ASK VL E+RLT++AF W++ EIE
Sbjct: 978 --------------------QKNATLFFNILLRSTFASKRVLKEYRLTKEAFEWVIGEIE 1017
Query: 366 NRFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
+RF Q+L GEM+G AAQSIGEPATQMTLNTFHYA
Sbjct: 1018 SRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYA 1054
[17][TOP]
>UniRef100_Q0DKN9 DNA-directed RNA polymerase n=1 Tax=Oryza sativa Japonica Group
RepID=Q0DKN9_ORYSJ
Length = 1834
Score = 131 bits (329), Expect = 3e-29
Identities = 70/157 (44%), Positives = 96/157 (61%)
Frame = +3
Query: 6 VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLP 185
VN++RLIWNA++ F + SD+ P +IV ++ L R +V+ D+D ++A
Sbjct: 978 VNLKRLIWNAQKTFKIDLRRPSDMHPMEIVDAIDKLQERLKVVPGDDDISIEA------- 1030
Query: 186 PDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIE 365
Q NATL F + +R++ ASK VL E+RLT++AF W++ EIE
Sbjct: 1031 --------------------QKNATLFFNILLRSTFASKRVLKEYRLTKEAFEWVIGEIE 1070
Query: 366 NRFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
+RF Q+L GEM+G AAQSIGEPATQMTLNTFHYA
Sbjct: 1071 SRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYA 1107
[18][TOP]
>UniRef100_A9QMS7 DNA-directed RNA polymerase (Fragment) n=1 Tax=Cuticonema vivipara
RepID=A9QMS7_9BILA
Length = 407
Score = 131 bits (329), Expect = 3e-29
Identities = 72/156 (46%), Positives = 98/156 (62%)
Frame = +3
Query: 9 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
N++R++WNA++IF V +DLSP K+++GV+ L R V+ S ED
Sbjct: 191 NLDRMMWNARKIFHVETRKPTDLSPLKVIQGVKDLTSRL-VIVSGED------------- 236
Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
++S+ AQ NATLL + +R++L SK + +H+L +AF WLL EIE
Sbjct: 237 -------------KISQQAQYNATLLMNILLRSTLCSKRLAEKHKLNTEAFEWLLGEIET 283
Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
+F QA+A GEMVGA AAQS+GEPATQMTLNTFHYA
Sbjct: 284 KFNQAIAQPGEMVGALAAQSLGEPATQMTLNTFHYA 319
[19][TOP]
>UniRef100_UPI0000546D90 PREDICTED: im:7136071 isoform 1 n=1 Tax=Danio rerio
RepID=UPI0000546D90
Length = 1972
Score = 130 bits (328), Expect = 4e-29
Identities = 70/156 (44%), Positives = 97/156 (62%)
Frame = +3
Query: 9 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
N+ R+IWNA++IF + +DL+P+++V GV+ L + ++ D+
Sbjct: 979 NLARMIWNAQKIFRINPRAPTDLNPARVVDGVKELSKKLVIVNGDD-------------- 1024
Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
+LS AQ NATLLF +H+R++L SK + E RL+ +AF WLL EIE
Sbjct: 1025 -------------QLSRQAQENATLLFNIHLRSTLCSKRMTEEFRLSTEAFDWLLGEIET 1071
Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
+F Q++A GEMVGA AAQS+GEPATQMTLNTFHYA
Sbjct: 1072 KFNQSIAHPGEMVGALAAQSLGEPATQMTLNTFHYA 1107
[20][TOP]
>UniRef100_Q1WKU2 Putative RNA polymerase II 215 kD subunit (Fragment) n=1
Tax=Drosophila simulans RepID=Q1WKU2_DROSI
Length = 746
Score = 130 bits (328), Expect = 4e-29
Identities = 70/156 (44%), Positives = 98/156 (62%)
Frame = +3
Query: 9 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
N++R+IWN ++IF + + +DLSP ++++GV+ LL R ++T ++
Sbjct: 116 NLQRMIWNVQKIFHINKRLPTDLSPIRVIKGVKTLLERCVIVTGND-------------- 161
Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
+S+ A NATLLFQ +R++L +K V E RL+ +AF WL+ EIE
Sbjct: 162 -------------RISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLVGEIET 208
Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
RFQQA A GEMVGA AAQS+GEPATQMTLNTFH+A
Sbjct: 209 RFQQAQANPGEMVGALAAQSLGEPATQMTLNTFHFA 244
[21][TOP]
>UniRef100_O01375 DNA-directed RNA polymerase (Fragment) n=1 Tax=Teratorhabditis
palmarum RepID=O01375_9BILA
Length = 631
Score = 130 bits (328), Expect = 4e-29
Identities = 72/156 (46%), Positives = 97/156 (62%)
Frame = +3
Query: 9 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
N++RLIWNA++IF + +DLSP +++ G+ L + V+ S ED
Sbjct: 187 NLQRLIWNAQKIFKIETRKVTDLSPVRVIEGIRELSKKL-VIVSGED------------- 232
Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
+S+ AQ NATLL + +R++L SK V S H+L +AF WLL EIE+
Sbjct: 233 -------------RISKQAQYNATLLMNILIRSTLCSKRVASMHKLNNEAFDWLLGEIEH 279
Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
RF+QA+A GEMVGA AAQS+GEPATQMTLNTFH+A
Sbjct: 280 RFKQAIAQPGEMVGALAAQSLGEPATQMTLNTFHFA 315
[22][TOP]
>UniRef100_B4IK28 DNA-directed RNA polymerase n=1 Tax=Drosophila sechellia
RepID=B4IK28_DROSE
Length = 1887
Score = 130 bits (328), Expect = 4e-29
Identities = 70/156 (44%), Positives = 98/156 (62%)
Frame = +3
Query: 9 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
N++R+IWN ++IF + + +DLSP ++++GV+ LL R ++T ++
Sbjct: 974 NLQRMIWNVQKIFHINKRLPTDLSPIRVIKGVKTLLERCVIVTGND-------------- 1019
Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
+S+ A NATLLFQ +R++L +K V E RL+ +AF WL+ EIE
Sbjct: 1020 -------------RISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLVGEIET 1066
Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
RFQQA A GEMVGA AAQS+GEPATQMTLNTFH+A
Sbjct: 1067 RFQQAQANPGEMVGALAAQSLGEPATQMTLNTFHFA 1102
[23][TOP]
>UniRef100_A9YGC1 RNA polymerase II 215 kD subunit (Fragment) n=2 Tax=melanogaster
subgroup RepID=A9YGC1_DROME
Length = 247
Score = 130 bits (328), Expect = 4e-29
Identities = 70/156 (44%), Positives = 98/156 (62%)
Frame = +3
Query: 9 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
N++R+IWN ++IF + + +DLSP ++++GV+ LL R ++T ++
Sbjct: 31 NLQRMIWNVQKIFHINKRLPTDLSPIRVIKGVKTLLERCVIVTGND-------------- 76
Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
+S+ A NATLLFQ +R++L +K V E RL+ +AF WL+ EIE
Sbjct: 77 -------------RISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLVGEIET 123
Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
RFQQA A GEMVGA AAQS+GEPATQMTLNTFH+A
Sbjct: 124 RFQQAQANPGEMVGALAAQSLGEPATQMTLNTFHFA 159
[24][TOP]
>UniRef100_A9UNH9 DNA-directed RNA polymerase n=1 Tax=Drosophila melanogaster
RepID=A9UNH9_DROME
Length = 1887
Score = 130 bits (328), Expect = 4e-29
Identities = 70/156 (44%), Positives = 98/156 (62%)
Frame = +3
Query: 9 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
N++R+IWN ++IF + + +DLSP ++++GV+ LL R ++T ++
Sbjct: 974 NLQRMIWNVQKIFHINKRLPTDLSPIRVIKGVKTLLERCVIVTGND-------------- 1019
Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
+S+ A NATLLFQ +R++L +K V E RL+ +AF WL+ EIE
Sbjct: 1020 -------------RISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLVGEIET 1066
Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
RFQQA A GEMVGA AAQS+GEPATQMTLNTFH+A
Sbjct: 1067 RFQQAQANPGEMVGALAAQSLGEPATQMTLNTFHFA 1102
[25][TOP]
>UniRef100_P04052 DNA-directed RNA polymerase II subunit RPB1 n=2 Tax=Drosophila
melanogaster RepID=RPB1_DROME
Length = 1887
Score = 130 bits (328), Expect = 4e-29
Identities = 70/156 (44%), Positives = 98/156 (62%)
Frame = +3
Query: 9 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
N++R+IWN ++IF + + +DLSP ++++GV+ LL R ++T ++
Sbjct: 974 NLQRMIWNVQKIFHINKRLPTDLSPIRVIKGVKTLLERCVIVTGND-------------- 1019
Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
+S+ A NATLLFQ +R++L +K V E RL+ +AF WL+ EIE
Sbjct: 1020 -------------RISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLVGEIET 1066
Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
RFQQA A GEMVGA AAQS+GEPATQMTLNTFH+A
Sbjct: 1067 RFQQAQANPGEMVGALAAQSLGEPATQMTLNTFHFA 1102
[26][TOP]
>UniRef100_UPI0001985649 PREDICTED: similar to NRPB1 (RNA POLYMERASE II LARGE SUBUNIT); DNA
binding / DNA-directed RNA polymerase n=1 Tax=Vitis
vinifera RepID=UPI0001985649
Length = 1848
Score = 130 bits (327), Expect = 5e-29
Identities = 75/157 (47%), Positives = 96/157 (61%)
Frame = +3
Query: 6 VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLP 185
VN++RLIWNA++ F V SD+ P +IV V+ L R +V+ D D I+ E
Sbjct: 977 VNLKRLIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVVPGD-----DLISME--- 1028
Query: 186 PDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIE 365
AQ NATL F + +R++ ASK VL E+RLTR+AF W++ EIE
Sbjct: 1029 -------------------AQKNATLFFNILLRSTFASKRVLKEYRLTREAFEWVIGEIE 1069
Query: 366 NRFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
+RF Q+L GEM+G AAQSIGEPATQMTLNTFHYA
Sbjct: 1070 SRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYA 1106
[27][TOP]
>UniRef100_UPI000179338A PREDICTED: similar to DNA-directed RNA polymerase II subunit RPB1
(RNA polymerase II subunit B1) (DNA-directed RNA
polymerase III largest subunit) n=1 Tax=Acyrthosiphon
pisum RepID=UPI000179338A
Length = 1862
Score = 130 bits (327), Expect = 5e-29
Identities = 70/156 (44%), Positives = 98/156 (62%)
Frame = +3
Query: 9 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
N++R+IWN ++IF + + ++DL+P K++ GV+ LL + ++ +
Sbjct: 975 NLKRMIWNVQKIFHINKRGQTDLNPVKVINGVKELLDKCVIVAGGD-------------- 1020
Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
ELS+ A NATLLFQ VR++L +K+V RL+ +AF WL+ EIEN
Sbjct: 1021 -------------ELSKKANHNATLLFQCLVRSTLCTKLVSERFRLSSEAFEWLIGEIEN 1067
Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
RF+QA A GEMVGA AAQS+GEPATQMTLNTFH+A
Sbjct: 1068 RFKQAQAQPGEMVGALAAQSLGEPATQMTLNTFHFA 1103
[28][TOP]
>UniRef100_UPI000051A77E PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
isoform 2 n=1 Tax=Apis mellifera RepID=UPI000051A77E
Length = 1422
Score = 130 bits (327), Expect = 5e-29
Identities = 71/156 (45%), Positives = 96/156 (61%)
Frame = +3
Query: 9 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
N++R+IWN ++IF + + +DLSP K+++GV+ LL + ++ D+
Sbjct: 974 NLQRMIWNVQKIFHINKRAPTDLSPMKVIQGVKDLLDKCIIVAGDD-------------- 1019
Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
LS+ A NATLLFQ VR++L +K V E RL+ +AF WL+ EIE
Sbjct: 1020 -------------RLSKQANENATLLFQCLVRSTLCTKCVSEEFRLSSEAFEWLIGEIET 1066
Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
RFQQA GEMVGA AAQS+GEPATQMTLNTFH+A
Sbjct: 1067 RFQQAQVSPGEMVGALAAQSLGEPATQMTLNTFHFA 1102
[29][TOP]
>UniRef100_A7NVN7 DNA-directed RNA polymerase n=1 Tax=Vitis vinifera
RepID=A7NVN7_VITVI
Length = 1010
Score = 130 bits (327), Expect = 5e-29
Identities = 75/157 (47%), Positives = 96/157 (61%)
Frame = +3
Query: 6 VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLP 185
VN++RLIWNA++ F V SD+ P +IV V+ L R +V+ D D I+ E
Sbjct: 214 VNLKRLIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVVPGD-----DLISME--- 265
Query: 186 PDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIE 365
AQ NATL F + +R++ ASK VL E+RLTR+AF W++ EIE
Sbjct: 266 -------------------AQKNATLFFNILLRSTFASKRVLKEYRLTREAFEWVIGEIE 306
Query: 366 NRFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
+RF Q+L GEM+G AAQSIGEPATQMTLNTFHYA
Sbjct: 307 SRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYA 343
[30][TOP]
>UniRef100_Q9XZU9 DNA-directed RNA polymerase n=1 Tax=Drosophila subobscura
RepID=Q9XZU9_DROSU
Length = 1889
Score = 130 bits (327), Expect = 5e-29
Identities = 70/156 (44%), Positives = 97/156 (62%)
Frame = +3
Query: 9 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
N++R+IWN ++IF + + +DLSP ++++GV+ LL R ++T +
Sbjct: 974 NLQRMIWNVQKIFHINKRLPTDLSPMRVIKGVKTLLERCVIVTGAD-------------- 1019
Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
+S+ A NATLLFQ +R++L +K V E RL+ +AF WL+ EIE
Sbjct: 1020 -------------RISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLIGEIET 1066
Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
RFQQA A GEMVGA AAQS+GEPATQMTLNTFH+A
Sbjct: 1067 RFQQAQANPGEMVGALAAQSLGEPATQMTLNTFHFA 1102
[31][TOP]
>UniRef100_Q9XZU8 DNA-directed RNA polymerase (Fragment) n=1 Tax=Drosophila
pseudoobscura pseudoobscura RepID=Q9XZU8_DROPS
Length = 1811
Score = 130 bits (327), Expect = 5e-29
Identities = 70/156 (44%), Positives = 97/156 (62%)
Frame = +3
Query: 9 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
N++R+IWN ++IF + + +DLSP ++++GV+ LL R ++T +
Sbjct: 896 NLQRMIWNVQKIFHINKRLPTDLSPMRVIKGVKTLLERCVIVTGAD-------------- 941
Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
+S+ A NATLLFQ +R++L +K V E RL+ +AF WL+ EIE
Sbjct: 942 -------------RISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLIGEIET 988
Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
RFQQA A GEMVGA AAQS+GEPATQMTLNTFH+A
Sbjct: 989 RFQQAQANPGEMVGALAAQSLGEPATQMTLNTFHFA 1024
[32][TOP]
>UniRef100_Q9XZS2 DNA-directed RNA polymerase n=1 Tax=Drosophila madeirensis
RepID=Q9XZS2_DROMD
Length = 1889
Score = 130 bits (327), Expect = 5e-29
Identities = 70/156 (44%), Positives = 97/156 (62%)
Frame = +3
Query: 9 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
N++R+IWN ++IF + + +DLSP ++++GV+ LL R ++T +
Sbjct: 974 NLQRMIWNVQKIFHINKRLPTDLSPMRVIKGVKTLLERCVIVTGAD-------------- 1019
Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
+S+ A NATLLFQ +R++L +K V E RL+ +AF WL+ EIE
Sbjct: 1020 -------------RISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLIGEIET 1066
Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
RFQQA A GEMVGA AAQS+GEPATQMTLNTFH+A
Sbjct: 1067 RFQQAQANPGEMVGALAAQSLGEPATQMTLNTFHFA 1102
[33][TOP]
>UniRef100_Q9XZS1 DNA-directed RNA polymerase n=1 Tax=Drosophila guanche
RepID=Q9XZS1_DROGU
Length = 1889
Score = 130 bits (327), Expect = 5e-29
Identities = 70/156 (44%), Positives = 97/156 (62%)
Frame = +3
Query: 9 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
N++R+IWN ++IF + + +DLSP ++++GV+ LL R ++T +
Sbjct: 974 NLQRMIWNVQKIFHINKRLPTDLSPMRVIKGVKTLLERCVIVTGAD-------------- 1019
Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
+S+ A NATLLFQ +R++L +K V E RL+ +AF WL+ EIE
Sbjct: 1020 -------------RISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLIGEIET 1066
Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
RFQQA A GEMVGA AAQS+GEPATQMTLNTFH+A
Sbjct: 1067 RFQQAQANPGEMVGALAAQSLGEPATQMTLNTFHFA 1102
[34][TOP]
>UniRef100_Q29IN2 DNA-directed RNA polymerase n=1 Tax=Drosophila pseudoobscura
pseudoobscura RepID=Q29IN2_DROPS
Length = 1889
Score = 130 bits (327), Expect = 5e-29
Identities = 70/156 (44%), Positives = 97/156 (62%)
Frame = +3
Query: 9 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
N++R+IWN ++IF + + +DLSP ++++GV+ LL R ++T +
Sbjct: 974 NLQRMIWNVQKIFHINKRLPTDLSPMRVIKGVKTLLERCVIVTGAD-------------- 1019
Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
+S+ A NATLLFQ +R++L +K V E RL+ +AF WL+ EIE
Sbjct: 1020 -------------RISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLIGEIET 1066
Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
RFQQA A GEMVGA AAQS+GEPATQMTLNTFH+A
Sbjct: 1067 RFQQAQANPGEMVGALAAQSLGEPATQMTLNTFHFA 1102
[35][TOP]
>UniRef100_Q1WKU4 Putative RNA polymerase II 215 kD subunit (Fragment) n=1
Tax=Drosophila erecta RepID=Q1WKU4_DROER
Length = 760
Score = 130 bits (327), Expect = 5e-29
Identities = 70/156 (44%), Positives = 98/156 (62%)
Frame = +3
Query: 9 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
N++R+IWN ++IF + + +DLSP ++++GV+ LL R ++T ++
Sbjct: 116 NLQRMIWNVQKIFHINKRLPTDLSPMRVIKGVKGLLERCVIVTGND-------------- 161
Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
+S+ A NATLLFQ +R++L +K V E RL+ +AF WL+ EIE
Sbjct: 162 -------------RISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLIGEIET 208
Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
RFQQA A GEMVGA AAQS+GEPATQMTLNTFH+A
Sbjct: 209 RFQQAQANPGEMVGALAAQSLGEPATQMTLNTFHFA 244
[36][TOP]
>UniRef100_Q1WKU3 Putative RNA polymerase II 215 kD subunit (Fragment) n=1
Tax=Drosophila orena RepID=Q1WKU3_DROOR
Length = 750
Score = 130 bits (327), Expect = 5e-29
Identities = 70/156 (44%), Positives = 98/156 (62%)
Frame = +3
Query: 9 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
N++R+IWN ++IF + + +DLSP ++++GV+ LL R ++T ++
Sbjct: 116 NLQRMIWNVQKIFHINKRLPTDLSPMRVIKGVKGLLERCVIVTGND-------------- 161
Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
+S+ A NATLLFQ +R++L +K V E RL+ +AF WL+ EIE
Sbjct: 162 -------------RISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLIGEIET 208
Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
RFQQA A GEMVGA AAQS+GEPATQMTLNTFH+A
Sbjct: 209 RFQQAQANPGEMVGALAAQSLGEPATQMTLNTFHFA 244
[37][TOP]
>UniRef100_Q1WKU0 Putative RNA polymerase II 215 kD subunit (Fragment) n=2
Tax=melanogaster subgroup RepID=Q1WKU0_DROYA
Length = 766
Score = 130 bits (327), Expect = 5e-29
Identities = 70/156 (44%), Positives = 98/156 (62%)
Frame = +3
Query: 9 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
N++R+IWN ++IF + + +DLSP ++++GV+ LL R ++T ++
Sbjct: 116 NLQRMIWNVQKIFHINKRLPTDLSPMRVIKGVKGLLERCVIVTGND-------------- 161
Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
+S+ A NATLLFQ +R++L +K V E RL+ +AF WL+ EIE
Sbjct: 162 -------------RISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLIGEIET 208
Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
RFQQA A GEMVGA AAQS+GEPATQMTLNTFH+A
Sbjct: 209 RFQQAQANPGEMVGALAAQSLGEPATQMTLNTFHFA 244
[38][TOP]
>UniRef100_B4PY98 DNA-directed RNA polymerase n=1 Tax=Drosophila yakuba
RepID=B4PY98_DROYA
Length = 1889
Score = 130 bits (327), Expect = 5e-29
Identities = 70/156 (44%), Positives = 98/156 (62%)
Frame = +3
Query: 9 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
N++R+IWN ++IF + + +DLSP ++++GV+ LL R ++T ++
Sbjct: 974 NLQRMIWNVQKIFHINKRLPTDLSPMRVIKGVKGLLERCVIVTGND-------------- 1019
Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
+S+ A NATLLFQ +R++L +K V E RL+ +AF WL+ EIE
Sbjct: 1020 -------------RISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLIGEIET 1066
Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
RFQQA A GEMVGA AAQS+GEPATQMTLNTFH+A
Sbjct: 1067 RFQQAQANPGEMVGALAAQSLGEPATQMTLNTFHFA 1102
[39][TOP]
>UniRef100_B4NDK9 DNA-directed RNA polymerase n=1 Tax=Drosophila willistoni
RepID=B4NDK9_DROWI
Length = 1890
Score = 130 bits (327), Expect = 5e-29
Identities = 71/156 (45%), Positives = 97/156 (62%)
Frame = +3
Query: 9 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
N++R+IWN ++IF + + +DLSP ++++GV LL R ++T ++
Sbjct: 974 NLQRMIWNVQKIFHINKRLPTDLSPMRVIKGVRGLLERCVIVTGND-------------- 1019
Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
+S+ A NATLLFQ VR++L +K V E RL+ +AF WL+ EIE
Sbjct: 1020 -------------RISKQANENATLLFQCLVRSTLCTKYVSEEFRLSTEAFEWLIGEIET 1066
Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
RFQQA A GEMVGA AAQS+GEPATQMTLNTFH+A
Sbjct: 1067 RFQQAQANPGEMVGALAAQSLGEPATQMTLNTFHFA 1102
[40][TOP]
>UniRef100_B4H2R8 DNA-directed RNA polymerase n=1 Tax=Drosophila persimilis
RepID=B4H2R8_DROPE
Length = 1804
Score = 130 bits (327), Expect = 5e-29
Identities = 70/156 (44%), Positives = 97/156 (62%)
Frame = +3
Query: 9 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
N++R+IWN ++IF + + +DLSP ++++GV+ LL R ++T +
Sbjct: 974 NLQRMIWNVQKIFHINKRLPTDLSPMRVIKGVKTLLERCVIVTGAD-------------- 1019
Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
+S+ A NATLLFQ +R++L +K V E RL+ +AF WL+ EIE
Sbjct: 1020 -------------RISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLIGEIET 1066
Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
RFQQA A GEMVGA AAQS+GEPATQMTLNTFH+A
Sbjct: 1067 RFQQAQANPGEMVGALAAQSLGEPATQMTLNTFHFA 1102
[41][TOP]
>UniRef100_B3NUC1 DNA-directed RNA polymerase n=1 Tax=Drosophila erecta
RepID=B3NUC1_DROER
Length = 1889
Score = 130 bits (327), Expect = 5e-29
Identities = 70/156 (44%), Positives = 98/156 (62%)
Frame = +3
Query: 9 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
N++R+IWN ++IF + + +DLSP ++++GV+ LL R ++T ++
Sbjct: 974 NLQRMIWNVQKIFHINKRLPTDLSPMRVIKGVKGLLERCVIVTGND-------------- 1019
Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
+S+ A NATLLFQ +R++L +K V E RL+ +AF WL+ EIE
Sbjct: 1020 -------------RISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLIGEIET 1066
Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
RFQQA A GEMVGA AAQS+GEPATQMTLNTFH+A
Sbjct: 1067 RFQQAQANPGEMVGALAAQSLGEPATQMTLNTFHFA 1102
[42][TOP]
>UniRef100_B3MQ29 DNA-directed RNA polymerase n=1 Tax=Drosophila ananassae
RepID=B3MQ29_DROAN
Length = 1889
Score = 130 bits (327), Expect = 5e-29
Identities = 70/156 (44%), Positives = 98/156 (62%)
Frame = +3
Query: 9 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
N++R+IWN ++IF + + +DLSP ++++GV+ LL R ++T ++
Sbjct: 974 NLQRMIWNVQKIFHINKRLPTDLSPMRVIKGVKGLLERCVIVTGND-------------- 1019
Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
+S+ A NATLLFQ +R++L +K V E RL+ +AF WL+ EIE
Sbjct: 1020 -------------RISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLIGEIET 1066
Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
RFQQA A GEMVGA AAQS+GEPATQMTLNTFH+A
Sbjct: 1067 RFQQAQANPGEMVGALAAQSLGEPATQMTLNTFHFA 1102
[43][TOP]
>UniRef100_A9QMF6 RNA polymerase 2 (Fragment) n=1 Tax=Pristionchus pacificus
RepID=A9QMF6_PRIPA
Length = 583
Score = 130 bits (327), Expect = 5e-29
Identities = 72/156 (46%), Positives = 95/156 (60%)
Frame = +3
Query: 9 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
N++RLIWNA++IF V +DLSP +++ GV + + ++ ED
Sbjct: 154 NLQRLIWNAQKIFHVEMRKPTDLSPVRVIEGVREVSKKL-IIVGGED------------- 199
Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
+S+ AQ NATLL + VR++L SK + +HRL +AF WLL EIE
Sbjct: 200 -------------RISKQAQYNATLLMNILVRSTLCSKQLAEKHRLNSEAFEWLLGEIET 246
Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
RFQQA+A GEMVGA AAQS+GEPATQMTLNTFH+A
Sbjct: 247 RFQQAIAQPGEMVGALAAQSLGEPATQMTLNTFHFA 282
[44][TOP]
>UniRef100_Q4SF83 DNA-directed RNA polymerase (Fragment) n=1 Tax=Tetraodon nigroviridis
RepID=Q4SF83_TETNG
Length = 1745
Score = 130 bits (326), Expect = 6e-29
Identities = 74/164 (45%), Positives = 99/164 (60%), Gaps = 8/164 (4%)
Frame = +3
Query: 9 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
N+ R+IWNA++IF + +DLSP ++V G+ + + S +IA
Sbjct: 856 NLARMIWNAQKIFRINTRTPTDLSPLRVVEGILSSVSLNEICCSPPFTLNISIADIQFEH 915
Query: 189 DGSASGPQDEALK--------ELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFT 344
SG + + K LS AQ NATLLF +H+R++L SK + E RL+ +AF
Sbjct: 916 VFGLSGTHELSKKLVIVNGDDPLSRQAQQNATLLFNIHLRSTLCSKRMTEEFRLSTEAFD 975
Query: 345 WLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
WLL EIE +F Q++A GEMVGA AAQS+GEPATQMTLNTFHYA
Sbjct: 976 WLLGEIETKFNQSIAHPGEMVGALAAQSLGEPATQMTLNTFHYA 1019
[45][TOP]
>UniRef100_B9SXC0 DNA-directed RNA polymerase n=1 Tax=Ricinus communis
RepID=B9SXC0_RICCO
Length = 1855
Score = 130 bits (326), Expect = 6e-29
Identities = 72/157 (45%), Positives = 95/157 (60%)
Frame = +3
Query: 6 VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLP 185
VN+ RLIWNA++ F V + SD+ P + V V+ L R +V+ D+ V+A
Sbjct: 977 VNLRRLIWNAQKTFKVDKRRPSDIHPMEAVEAVDKLQERLKVVPGDDPLSVEA------- 1029
Query: 186 PDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIE 365
Q NATL F + +R++LASK VL ++RLTR+AF W++ EIE
Sbjct: 1030 --------------------QKNATLFFGILLRSTLASKRVLEDYRLTREAFDWVIGEIE 1069
Query: 366 NRFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
+RF Q+L GEM+G AAQSIGEPATQMTLNTFHYA
Sbjct: 1070 SRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYA 1106
[46][TOP]
>UniRef100_A9QMR5 DNA-directed RNA polymerase (Fragment) n=1 Tax=Rhabditoides
inermiformis RepID=A9QMR5_9BILA
Length = 524
Score = 130 bits (326), Expect = 6e-29
Identities = 71/156 (45%), Positives = 96/156 (61%)
Frame = +3
Query: 9 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
N++RLIWNA++IF V ++S L+P +++ GV + + V+ ED
Sbjct: 181 NLQRLIWNAQKIFHVETREKSSLNPLRVIAGVREMSQKL-VIVGGED------------- 226
Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
+S+ AQ NATLL + VR++L SK + ++RL +AF WLL E+E
Sbjct: 227 -------------RISKQAQYNATLLMNILVRSTLCSKQMADKYRLNAQAFEWLLGEVET 273
Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
RFQQA+A GEMVGA AAQS+GEPATQMTLNTFHYA
Sbjct: 274 RFQQAIAQPGEMVGALAAQSLGEPATQMTLNTFHYA 309
[47][TOP]
>UniRef100_A9QMG9 DNA-directed RNA polymerase (Fragment) n=1 Tax=Poikilolaimus
regenfussi RepID=A9QMG9_9BILA
Length = 620
Score = 130 bits (326), Expect = 6e-29
Identities = 68/156 (43%), Positives = 96/156 (61%)
Frame = +3
Query: 9 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
N++RLIWNA+++F V +++L+P +++ GV L + ++ D+
Sbjct: 183 NLQRLIWNAQKVFHVETRKQTELNPLRVIEGVRELSKKLVIVGGDD-------------- 228
Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
+S+ AQ NATLL + +R++L SK V +HRL ++AF WL+ EIE
Sbjct: 229 -------------RISKQAQFNATLLMNILLRSTLCSKQVAEKHRLNQEAFEWLIGEIET 275
Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
RF QA+A GEMVGA AAQS+GEPATQMTLNTFHYA
Sbjct: 276 RFXQAIAQPGEMVGALAAQSLGEPATQMTLNTFHYA 311
[48][TOP]
>UniRef100_A9QMF4 RNA polymerase 2 (Fragment) n=1 Tax=Rhabditoides inermiformis
RepID=A9QMF4_9BILA
Length = 597
Score = 130 bits (326), Expect = 6e-29
Identities = 71/156 (45%), Positives = 96/156 (61%)
Frame = +3
Query: 9 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
N++RLIWNA++IF V ++S L+P +++ GV + + V+ ED
Sbjct: 149 NLQRLIWNAQKIFHVETREKSSLNPLRVIAGVREMSQKL-VIVGGED------------- 194
Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
+S+ AQ NATLL + VR++L SK + ++RL +AF WLL E+E
Sbjct: 195 -------------RISKQAQYNATLLMNILVRSTLCSKQMADKYRLNAQAFEWLLGEVET 241
Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
RFQQA+A GEMVGA AAQS+GEPATQMTLNTFHYA
Sbjct: 242 RFQQAIAQPGEMVGALAAQSLGEPATQMTLNTFHYA 277
[49][TOP]
>UniRef100_B4E3V7 DNA-directed RNA polymerase n=1 Tax=Homo sapiens RepID=B4E3V7_HUMAN
Length = 1935
Score = 130 bits (326), Expect = 6e-29
Identities = 72/156 (46%), Positives = 95/156 (60%)
Frame = +3
Query: 9 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
N+ R+IWNA++IF + SDL P K+V GV+ L + ++ D+
Sbjct: 947 NLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKKLSKKLVIVNGDDP------------- 993
Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
LS AQ NATLLF +H+R++L S+ + E RL+ +AF WLL EIE+
Sbjct: 994 --------------LSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIES 1039
Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
+F QA+A GEMVGA AAQS+GEPATQMTLNTFHYA
Sbjct: 1040 KFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYA 1075
[50][TOP]
>UniRef100_UPI0001796DD3 PREDICTED: similar to DNA-directed RNA polymerase II subunit RPB1
(RNA polymerase II subunit B1) (DNA-directed RNA
polymerase II subunit A) (DNA-directed RNA polymerase III
largest subunit) n=1 Tax=Equus caballus
RepID=UPI0001796DD3
Length = 1834
Score = 129 bits (325), Expect = 8e-29
Identities = 72/156 (46%), Positives = 95/156 (60%)
Frame = +3
Query: 9 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
N+ R+IWNA++IF + SDL P K+V GV+ L + ++ D+
Sbjct: 982 NLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDDP------------- 1028
Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
LS AQ NATLLF +H+R++L S+ + E RL+ +AF WLL EIE+
Sbjct: 1029 --------------LSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIES 1074
Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
+F QA+A GEMVGA AAQS+GEPATQMTLNTFHYA
Sbjct: 1075 KFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYA 1110
[51][TOP]
>UniRef100_UPI0000EBDCD2 PREDICTED: polymerase (RNA) II (DNA directed) polypeptide A, 220kDa
isoform 4 n=1 Tax=Bos taurus RepID=UPI0000EBDCD2
Length = 1970
Score = 129 bits (325), Expect = 8e-29
Identities = 72/156 (46%), Positives = 95/156 (60%)
Frame = +3
Query: 9 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
N+ R+IWNA++IF + SDL P K+V GV+ L + ++ D+
Sbjct: 982 NLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDDP------------- 1028
Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
LS AQ NATLLF +H+R++L S+ + E RL+ +AF WLL EIE+
Sbjct: 1029 --------------LSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIES 1074
Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
+F QA+A GEMVGA AAQS+GEPATQMTLNTFHYA
Sbjct: 1075 KFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYA 1110
[52][TOP]
>UniRef100_UPI0000E24648 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
(RPB1) n=1 Tax=Pan troglodytes RepID=UPI0000E24648
Length = 1913
Score = 129 bits (325), Expect = 8e-29
Identities = 72/156 (46%), Positives = 95/156 (60%)
Frame = +3
Query: 9 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
N+ R+IWNA++IF + SDL P K+V GV+ L + ++ D+
Sbjct: 982 NLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDDP------------- 1028
Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
LS AQ NATLLF +H+R++L S+ + E RL+ +AF WLL EIE+
Sbjct: 1029 --------------LSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIES 1074
Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
+F QA+A GEMVGA AAQS+GEPATQMTLNTFHYA
Sbjct: 1075 KFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYA 1110
[53][TOP]
>UniRef100_UPI00005A0B2C PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
(RPB1) isoform 23 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B2C
Length = 1888
Score = 129 bits (325), Expect = 8e-29
Identities = 72/156 (46%), Positives = 95/156 (60%)
Frame = +3
Query: 9 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
N+ R+IWNA++IF + SDL P K+V GV+ L + ++ D+
Sbjct: 982 NLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDDP------------- 1028
Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
LS AQ NATLLF +H+R++L S+ + E RL+ +AF WLL EIE+
Sbjct: 1029 --------------LSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIES 1074
Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
+F QA+A GEMVGA AAQS+GEPATQMTLNTFHYA
Sbjct: 1075 KFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYA 1110
[54][TOP]
>UniRef100_UPI00005A0B2B PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
(RPB1) isoform 22 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B2B
Length = 1892
Score = 129 bits (325), Expect = 8e-29
Identities = 72/156 (46%), Positives = 95/156 (60%)
Frame = +3
Query: 9 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
N+ R+IWNA++IF + SDL P K+V GV+ L + ++ D+
Sbjct: 984 NLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDDP------------- 1030
Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
LS AQ NATLLF +H+R++L S+ + E RL+ +AF WLL EIE+
Sbjct: 1031 --------------LSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIES 1076
Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
+F QA+A GEMVGA AAQS+GEPATQMTLNTFHYA
Sbjct: 1077 KFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYA 1112
[55][TOP]
>UniRef100_UPI00005A0B2A PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
(RPB1) isoform 21 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B2A
Length = 1896
Score = 129 bits (325), Expect = 8e-29
Identities = 72/156 (46%), Positives = 95/156 (60%)
Frame = +3
Query: 9 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
N+ R+IWNA++IF + SDL P K+V GV+ L + ++ D+
Sbjct: 984 NLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDDP------------- 1030
Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
LS AQ NATLLF +H+R++L S+ + E RL+ +AF WLL EIE+
Sbjct: 1031 --------------LSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIES 1076
Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
+F QA+A GEMVGA AAQS+GEPATQMTLNTFHYA
Sbjct: 1077 KFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYA 1112
[56][TOP]
>UniRef100_UPI00005A0B29 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
(RPB1) isoform 20 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B29
Length = 1891
Score = 129 bits (325), Expect = 8e-29
Identities = 72/156 (46%), Positives = 95/156 (60%)
Frame = +3
Query: 9 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
N+ R+IWNA++IF + SDL P K+V GV+ L + ++ D+
Sbjct: 951 NLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDDP------------- 997
Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
LS AQ NATLLF +H+R++L S+ + E RL+ +AF WLL EIE+
Sbjct: 998 --------------LSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIES 1043
Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
+F QA+A GEMVGA AAQS+GEPATQMTLNTFHYA
Sbjct: 1044 KFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYA 1079
[57][TOP]
>UniRef100_UPI00005A0B28 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
(RPB1) isoform 19 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B28
Length = 1908
Score = 129 bits (325), Expect = 8e-29
Identities = 72/156 (46%), Positives = 95/156 (60%)
Frame = +3
Query: 9 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
N+ R+IWNA++IF + SDL P K+V GV+ L + ++ D+
Sbjct: 968 NLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDDP------------- 1014
Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
LS AQ NATLLF +H+R++L S+ + E RL+ +AF WLL EIE+
Sbjct: 1015 --------------LSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIES 1060
Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
+F QA+A GEMVGA AAQS+GEPATQMTLNTFHYA
Sbjct: 1061 KFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYA 1096
[58][TOP]
>UniRef100_UPI00005A0B27 PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide
A isoform 18 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B27
Length = 1831
Score = 129 bits (325), Expect = 8e-29
Identities = 72/156 (46%), Positives = 95/156 (60%)
Frame = +3
Query: 9 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
N+ R+IWNA++IF + SDL P K+V GV+ L + ++ D+
Sbjct: 982 NLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDDP------------- 1028
Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
LS AQ NATLLF +H+R++L S+ + E RL+ +AF WLL EIE+
Sbjct: 1029 --------------LSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIES 1074
Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
+F QA+A GEMVGA AAQS+GEPATQMTLNTFHYA
Sbjct: 1075 KFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYA 1110
[59][TOP]
>UniRef100_UPI00005A0B26 PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide
A isoform 17 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B26
Length = 1684
Score = 129 bits (325), Expect = 8e-29
Identities = 72/156 (46%), Positives = 95/156 (60%)
Frame = +3
Query: 9 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
N+ R+IWNA++IF + SDL P K+V GV+ L + ++ D+
Sbjct: 972 NLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDDP------------- 1018
Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
LS AQ NATLLF +H+R++L S+ + E RL+ +AF WLL EIE+
Sbjct: 1019 --------------LSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIES 1064
Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
+F QA+A GEMVGA AAQS+GEPATQMTLNTFHYA
Sbjct: 1065 KFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYA 1100
[60][TOP]
>UniRef100_UPI00005A0B25 PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide
A isoform 16 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B25
Length = 1752
Score = 129 bits (325), Expect = 8e-29
Identities = 72/156 (46%), Positives = 95/156 (60%)
Frame = +3
Query: 9 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
N+ R+IWNA++IF + SDL P K+V GV+ L + ++ D+
Sbjct: 972 NLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDDP------------- 1018
Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
LS AQ NATLLF +H+R++L S+ + E RL+ +AF WLL EIE+
Sbjct: 1019 --------------LSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIES 1064
Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
+F QA+A GEMVGA AAQS+GEPATQMTLNTFHYA
Sbjct: 1065 KFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYA 1100
[61][TOP]
>UniRef100_UPI00005A0B24 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
(RPB1) isoform 15 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B24
Length = 1924
Score = 129 bits (325), Expect = 8e-29
Identities = 72/156 (46%), Positives = 95/156 (60%)
Frame = +3
Query: 9 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
N+ R+IWNA++IF + SDL P K+V GV+ L + ++ D+
Sbjct: 984 NLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDDP------------- 1030
Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
LS AQ NATLLF +H+R++L S+ + E RL+ +AF WLL EIE+
Sbjct: 1031 --------------LSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIES 1076
Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
+F QA+A GEMVGA AAQS+GEPATQMTLNTFHYA
Sbjct: 1077 KFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYA 1112
[62][TOP]
>UniRef100_UPI00005A0B23 PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide
A isoform 14 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B23
Length = 1653
Score = 129 bits (325), Expect = 8e-29
Identities = 72/156 (46%), Positives = 95/156 (60%)
Frame = +3
Query: 9 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
N+ R+IWNA++IF + SDL P K+V GV+ L + ++ D+
Sbjct: 955 NLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDDP------------- 1001
Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
LS AQ NATLLF +H+R++L S+ + E RL+ +AF WLL EIE+
Sbjct: 1002 --------------LSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIES 1047
Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
+F QA+A GEMVGA AAQS+GEPATQMTLNTFHYA
Sbjct: 1048 KFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYA 1083
[63][TOP]
>UniRef100_UPI00005A0B22 PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide
A isoform 13 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B22
Length = 1722
Score = 129 bits (325), Expect = 8e-29
Identities = 72/156 (46%), Positives = 95/156 (60%)
Frame = +3
Query: 9 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
N+ R+IWNA++IF + SDL P K+V GV+ L + ++ D+
Sbjct: 955 NLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDDP------------- 1001
Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
LS AQ NATLLF +H+R++L S+ + E RL+ +AF WLL EIE+
Sbjct: 1002 --------------LSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIES 1047
Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
+F QA+A GEMVGA AAQS+GEPATQMTLNTFHYA
Sbjct: 1048 KFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYA 1083
[64][TOP]
>UniRef100_UPI00005A0B21 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
(RPB1) isoform 12 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B21
Length = 1922
Score = 129 bits (325), Expect = 8e-29
Identities = 72/156 (46%), Positives = 95/156 (60%)
Frame = +3
Query: 9 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
N+ R+IWNA++IF + SDL P K+V GV+ L + ++ D+
Sbjct: 982 NLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDDP------------- 1028
Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
LS AQ NATLLF +H+R++L S+ + E RL+ +AF WLL EIE+
Sbjct: 1029 --------------LSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIES 1074
Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
+F QA+A GEMVGA AAQS+GEPATQMTLNTFHYA
Sbjct: 1075 KFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYA 1110
[65][TOP]
>UniRef100_UPI00005A0B20 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
(RPB1) isoform 11 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B20
Length = 1923
Score = 129 bits (325), Expect = 8e-29
Identities = 72/156 (46%), Positives = 95/156 (60%)
Frame = +3
Query: 9 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
N+ R+IWNA++IF + SDL P K+V GV+ L + ++ D+
Sbjct: 983 NLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDDP------------- 1029
Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
LS AQ NATLLF +H+R++L S+ + E RL+ +AF WLL EIE+
Sbjct: 1030 --------------LSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIES 1075
Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
+F QA+A GEMVGA AAQS+GEPATQMTLNTFHYA
Sbjct: 1076 KFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYA 1111
[66][TOP]
>UniRef100_UPI00005A0B1F PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide
A isoform 10 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B1F
Length = 1840
Score = 129 bits (325), Expect = 8e-29
Identities = 72/156 (46%), Positives = 95/156 (60%)
Frame = +3
Query: 9 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
N+ R+IWNA++IF + SDL P K+V GV+ L + ++ D+
Sbjct: 978 NLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDDP------------- 1024
Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
LS AQ NATLLF +H+R++L S+ + E RL+ +AF WLL EIE+
Sbjct: 1025 --------------LSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIES 1070
Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
+F QA+A GEMVGA AAQS+GEPATQMTLNTFHYA
Sbjct: 1071 KFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYA 1106
[67][TOP]
>UniRef100_UPI00005A0B1E PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide
A isoform 9 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B1E
Length = 1851
Score = 129 bits (325), Expect = 8e-29
Identities = 72/156 (46%), Positives = 95/156 (60%)
Frame = +3
Query: 9 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
N+ R+IWNA++IF + SDL P K+V GV+ L + ++ D+
Sbjct: 978 NLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDDP------------- 1024
Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
LS AQ NATLLF +H+R++L S+ + E RL+ +AF WLL EIE+
Sbjct: 1025 --------------LSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIES 1070
Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
+F QA+A GEMVGA AAQS+GEPATQMTLNTFHYA
Sbjct: 1071 KFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYA 1106
[68][TOP]
>UniRef100_UPI00005A0B1D PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
(RPB1) isoform 1 n=2 Tax=Canis lupus familiaris
RepID=UPI00005A0B1D
Length = 1764
Score = 129 bits (325), Expect = 8e-29
Identities = 72/156 (46%), Positives = 95/156 (60%)
Frame = +3
Query: 9 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
N+ R+IWNA++IF + SDL P K+V GV+ L + ++ D+
Sbjct: 1000 NLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDDP------------- 1046
Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
LS AQ NATLLF +H+R++L S+ + E RL+ +AF WLL EIE+
Sbjct: 1047 --------------LSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIES 1092
Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
+F QA+A GEMVGA AAQS+GEPATQMTLNTFHYA
Sbjct: 1093 KFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYA 1128
[69][TOP]
>UniRef100_UPI00005A0B1C PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide
A isoform 8 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B1C
Length = 1719
Score = 129 bits (325), Expect = 8e-29
Identities = 72/156 (46%), Positives = 95/156 (60%)
Frame = +3
Query: 9 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
N+ R+IWNA++IF + SDL P K+V GV+ L + ++ D+
Sbjct: 976 NLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDDP------------- 1022
Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
LS AQ NATLLF +H+R++L S+ + E RL+ +AF WLL EIE+
Sbjct: 1023 --------------LSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIES 1068
Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
+F QA+A GEMVGA AAQS+GEPATQMTLNTFHYA
Sbjct: 1069 KFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYA 1104
[70][TOP]
>UniRef100_UPI00005A0B1B PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide
A isoform 7 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B1B
Length = 1858
Score = 129 bits (325), Expect = 8e-29
Identities = 72/156 (46%), Positives = 95/156 (60%)
Frame = +3
Query: 9 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
N+ R+IWNA++IF + SDL P K+V GV+ L + ++ D+
Sbjct: 976 NLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDDP------------- 1022
Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
LS AQ NATLLF +H+R++L S+ + E RL+ +AF WLL EIE+
Sbjct: 1023 --------------LSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIES 1068
Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
+F QA+A GEMVGA AAQS+GEPATQMTLNTFHYA
Sbjct: 1069 KFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYA 1104
[71][TOP]
>UniRef100_UPI00005A0B1A PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
(RPB1) isoform 6 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B1A
Length = 1767
Score = 129 bits (325), Expect = 8e-29
Identities = 72/156 (46%), Positives = 95/156 (60%)
Frame = +3
Query: 9 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
N+ R+IWNA++IF + SDL P K+V GV+ L + ++ D+
Sbjct: 970 NLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDDP------------- 1016
Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
LS AQ NATLLF +H+R++L S+ + E RL+ +AF WLL EIE+
Sbjct: 1017 --------------LSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIES 1062
Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
+F QA+A GEMVGA AAQS+GEPATQMTLNTFHYA
Sbjct: 1063 KFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYA 1098
[72][TOP]
>UniRef100_UPI00005A0B19 PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide
A isoform 5 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B19
Length = 1693
Score = 129 bits (325), Expect = 8e-29
Identities = 72/156 (46%), Positives = 95/156 (60%)
Frame = +3
Query: 9 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
N+ R+IWNA++IF + SDL P K+V GV+ L + ++ D+
Sbjct: 968 NLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDDP------------- 1014
Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
LS AQ NATLLF +H+R++L S+ + E RL+ +AF WLL EIE+
Sbjct: 1015 --------------LSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIES 1060
Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
+F QA+A GEMVGA AAQS+GEPATQMTLNTFHYA
Sbjct: 1061 KFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYA 1096
[73][TOP]
>UniRef100_UPI00005A0B17 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
(RPB1) isoform 3 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B17
Length = 1788
Score = 129 bits (325), Expect = 8e-29
Identities = 72/156 (46%), Positives = 95/156 (60%)
Frame = +3
Query: 9 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
N+ R+IWNA++IF + SDL P K+V GV+ L + ++ D+
Sbjct: 982 NLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDDP------------- 1028
Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
LS AQ NATLLF +H+R++L S+ + E RL+ +AF WLL EIE+
Sbjct: 1029 --------------LSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIES 1074
Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
+F QA+A GEMVGA AAQS+GEPATQMTLNTFHYA
Sbjct: 1075 KFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYA 1110
[74][TOP]
>UniRef100_UPI00005A0B16 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
(RPB1) isoform 2 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B16
Length = 1922
Score = 129 bits (325), Expect = 8e-29
Identities = 72/156 (46%), Positives = 95/156 (60%)
Frame = +3
Query: 9 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
N+ R+IWNA++IF + SDL P K+V GV+ L + ++ D+
Sbjct: 982 NLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDDP------------- 1028
Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
LS AQ NATLLF +H+R++L S+ + E RL+ +AF WLL EIE+
Sbjct: 1029 --------------LSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIES 1074
Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
+F QA+A GEMVGA AAQS+GEPATQMTLNTFHYA
Sbjct: 1075 KFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYA 1110
[75][TOP]
>UniRef100_UPI0001B7A25C UPI0001B7A25C related cluster n=1 Tax=Rattus norvegicus
RepID=UPI0001B7A25C
Length = 1968
Score = 129 bits (325), Expect = 8e-29
Identities = 72/156 (46%), Positives = 95/156 (60%)
Frame = +3
Query: 9 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
N+ R+IWNA++IF + SDL P K+V GV+ L + ++ D+
Sbjct: 984 NLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDDP------------- 1030
Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
LS AQ NATLLF +H+R++L S+ + E RL+ +AF WLL EIE+
Sbjct: 1031 --------------LSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIES 1076
Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
+F QA+A GEMVGA AAQS+GEPATQMTLNTFHYA
Sbjct: 1077 KFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYA 1112
[76][TOP]
>UniRef100_UPI0001B7A25B UPI0001B7A25B related cluster n=1 Tax=Rattus norvegicus
RepID=UPI0001B7A25B
Length = 1932
Score = 129 bits (325), Expect = 8e-29
Identities = 72/156 (46%), Positives = 95/156 (60%)
Frame = +3
Query: 9 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
N+ R+IWNA++IF + SDL P K+V GV+ L + ++ D+
Sbjct: 982 NLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDDP------------- 1028
Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
LS AQ NATLLF +H+R++L S+ + E RL+ +AF WLL EIE+
Sbjct: 1029 --------------LSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIES 1074
Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
+F QA+A GEMVGA AAQS+GEPATQMTLNTFHYA
Sbjct: 1075 KFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYA 1110
[77][TOP]
>UniRef100_UPI0000DA33D8 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
(RPB1) n=1 Tax=Rattus norvegicus RepID=UPI0000DA33D8
Length = 1970
Score = 129 bits (325), Expect = 8e-29
Identities = 72/156 (46%), Positives = 95/156 (60%)
Frame = +3
Query: 9 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
N+ R+IWNA++IF + SDL P K+V GV+ L + ++ D+
Sbjct: 982 NLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDDP------------- 1028
Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
LS AQ NATLLF +H+R++L S+ + E RL+ +AF WLL EIE+
Sbjct: 1029 --------------LSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIES 1074
Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
+F QA+A GEMVGA AAQS+GEPATQMTLNTFHYA
Sbjct: 1075 KFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYA 1110
[78][TOP]
>UniRef100_UPI0001951285 220 kDa DNA-directed RNA polymerase polypeptide A n=1 Tax=Canis lupus
familiaris RepID=UPI0001951285
Length = 1969
Score = 129 bits (325), Expect = 8e-29
Identities = 72/156 (46%), Positives = 95/156 (60%)
Frame = +3
Query: 9 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
N+ R+IWNA++IF + SDL P K+V GV+ L + ++ D+
Sbjct: 982 NLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDDP------------- 1028
Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
LS AQ NATLLF +H+R++L S+ + E RL+ +AF WLL EIE+
Sbjct: 1029 --------------LSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIES 1074
Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
+F QA+A GEMVGA AAQS+GEPATQMTLNTFHYA
Sbjct: 1075 KFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYA 1110
[79][TOP]
>UniRef100_O08847 DNA-directed RNA polymerase n=1 Tax=Mus musculus RepID=O08847_MOUSE
Length = 1966
Score = 129 bits (325), Expect = 8e-29
Identities = 72/156 (46%), Positives = 95/156 (60%)
Frame = +3
Query: 9 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
N+ R+IWNA++IF + SDL P K+V GV+ L + ++ D+
Sbjct: 982 NLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDDP------------- 1028
Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
LS AQ NATLLF +H+R++L S+ + E RL+ +AF WLL EIE+
Sbjct: 1029 --------------LSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIES 1074
Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
+F QA+A GEMVGA AAQS+GEPATQMTLNTFHYA
Sbjct: 1075 KFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYA 1110
[80][TOP]
>UniRef100_Q9NJN3 RNA polymerase II largest subunit (Fragment) n=1 Tax=Armadillidium
vulgare RepID=Q9NJN3_ARMVU
Length = 433
Score = 129 bits (325), Expect = 8e-29
Identities = 70/156 (44%), Positives = 95/156 (60%)
Frame = +3
Query: 9 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
N+ER+IWN ++IF + + ++DLSP K+V GV L + +++ ++
Sbjct: 139 NLERMIWNVQKIFHINKRMQTDLSPIKVVEGVNETLRKCMIVSGED-------------- 184
Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
+S A NATLLF VR++L +K V E+RLT +AF WL+ EIE
Sbjct: 185 -------------RISVQANENATLLFHCLVRSTLCTKKVSEEYRLTTEAFNWLMGEIET 231
Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
RF QA+A GEMVGA AAQS+GEPATQMTLNTFH+A
Sbjct: 232 RFNQAIANPGEMVGALAAQSLGEPATQMTLNTFHFA 267
[81][TOP]
>UniRef100_Q6JU60 DNA-directed RNA polymerase (Fragment) n=1 Tax=Armadillidium
vulgare RepID=Q6JU60_ARMVU
Length = 736
Score = 129 bits (325), Expect = 8e-29
Identities = 70/156 (44%), Positives = 95/156 (60%)
Frame = +3
Query: 9 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
N+ER+IWN ++IF + + ++DLSP K+V GV L + +++ ++
Sbjct: 442 NLERMIWNVQKIFHINKRMQTDLSPIKVVEGVNETLRKCMIVSGED-------------- 487
Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
+S A NATLLF VR++L +K V E+RLT +AF WL+ EIE
Sbjct: 488 -------------RISVQANENATLLFHCLVRSTLCTKKVSEEYRLTTEAFNWLMGEIET 534
Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
RF QA+A GEMVGA AAQS+GEPATQMTLNTFH+A
Sbjct: 535 RFNQAIANPGEMVGALAAQSLGEPATQMTLNTFHFA 570
[82][TOP]
>UniRef100_A6NN93 DNA-directed RNA polymerase n=1 Tax=Homo sapiens RepID=A6NN93_HUMAN
Length = 1970
Score = 129 bits (325), Expect = 8e-29
Identities = 72/156 (46%), Positives = 95/156 (60%)
Frame = +3
Query: 9 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
N+ R+IWNA++IF + SDL P K+V GV+ L + ++ D+
Sbjct: 982 NLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDDP------------- 1028
Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
LS AQ NATLLF +H+R++L S+ + E RL+ +AF WLL EIE+
Sbjct: 1029 --------------LSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIES 1074
Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
+F QA+A GEMVGA AAQS+GEPATQMTLNTFHYA
Sbjct: 1075 KFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYA 1110
[83][TOP]
>UniRef100_P08775 DNA-directed RNA polymerase II subunit RPB1 n=1 Tax=Mus musculus
RepID=RPB1_MOUSE
Length = 1970
Score = 129 bits (325), Expect = 8e-29
Identities = 72/156 (46%), Positives = 95/156 (60%)
Frame = +3
Query: 9 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
N+ R+IWNA++IF + SDL P K+V GV+ L + ++ D+
Sbjct: 982 NLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDDP------------- 1028
Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
LS AQ NATLLF +H+R++L S+ + E RL+ +AF WLL EIE+
Sbjct: 1029 --------------LSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIES 1074
Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
+F QA+A GEMVGA AAQS+GEPATQMTLNTFHYA
Sbjct: 1075 KFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYA 1110
[84][TOP]
>UniRef100_P24928 DNA-directed RNA polymerase II subunit RPB1 n=2 Tax=Euarchontoglires
RepID=RPB1_HUMAN
Length = 1970
Score = 129 bits (325), Expect = 8e-29
Identities = 72/156 (46%), Positives = 95/156 (60%)
Frame = +3
Query: 9 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
N+ R+IWNA++IF + SDL P K+V GV+ L + ++ D+
Sbjct: 982 NLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDDP------------- 1028
Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
LS AQ NATLLF +H+R++L S+ + E RL+ +AF WLL EIE+
Sbjct: 1029 --------------LSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIES 1074
Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
+F QA+A GEMVGA AAQS+GEPATQMTLNTFHYA
Sbjct: 1075 KFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYA 1110
[85][TOP]
>UniRef100_UPI00017B0A92 UPI00017B0A92 related cluster n=1 Tax=Tetraodon nigroviridis
RepID=UPI00017B0A92
Length = 1714
Score = 129 bits (324), Expect = 1e-28
Identities = 70/156 (44%), Positives = 93/156 (59%)
Frame = +3
Query: 9 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
N+ R+IWNA++IF + +DLSP ++V G L + ++ D+
Sbjct: 960 NLARMIWNAQKIFRINTRTPTDLSPLRVVEGTHELSKKLVIVNGDDP------------- 1006
Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
LS AQ NATLLF +H+R++L SK + E RL+ +AF WLL EIE
Sbjct: 1007 --------------LSRQAQQNATLLFNIHLRSTLCSKRMTEEFRLSTEAFDWLLGEIET 1052
Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
+F Q++A GEMVGA AAQS+GEPATQMTLNTFHYA
Sbjct: 1053 KFNQSIAHPGEMVGALAAQSLGEPATQMTLNTFHYA 1088
[86][TOP]
>UniRef100_A9TK89 DNA-directed RNA polymerase n=1 Tax=Physcomitrella patens subsp.
patens RepID=A9TK89_PHYPA
Length = 1646
Score = 129 bits (324), Expect = 1e-28
Identities = 73/157 (46%), Positives = 95/157 (60%)
Frame = +3
Query: 6 VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLP 185
VN++RLIWNA++IF V SD+ P +IV V+ L R RV+ D+
Sbjct: 965 VNLKRLIWNAQKIFKVDFRKPSDMHPMEIVEAVDKLQERLRVVPGDD------------- 1011
Query: 186 PDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIE 365
++S AQ NATL F +R++LASK VL ++RLTR+AF W++ EIE
Sbjct: 1012 --------------QISMEAQRNATLFFGCLLRSTLASKRVLKDYRLTREAFDWVIGEIE 1057
Query: 366 NRFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
RF +L GEM+G AAQSIGEPATQMTLNTFH+A
Sbjct: 1058 TRFLMSLVAPGEMIGCVAAQSIGEPATQMTLNTFHFA 1094
[87][TOP]
>UniRef100_Q7Q3C6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Anopheles gambiae
RepID=Q7Q3C6_ANOGA
Length = 1878
Score = 129 bits (324), Expect = 1e-28
Identities = 71/156 (45%), Positives = 93/156 (59%)
Frame = +3
Query: 9 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
N++R+IWN ++IF + + +DLSP K+++GV LL R ++ +
Sbjct: 972 NLQRMIWNVQKIFHINKRSPTDLSPLKVIQGVRDLLQRCVIVAGTD-------------- 1017
Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
LS+ A NATLLFQ VR++L +K V E RL +AF WL+ EIE
Sbjct: 1018 -------------RLSKQANENATLLFQCLVRSTLCTKYVAEEFRLNNEAFEWLIGEIET 1064
Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
RFQQA GEMVGA AAQS+GEPATQMTLNTFH+A
Sbjct: 1065 RFQQAQCNPGEMVGALAAQSLGEPATQMTLNTFHFA 1100
[88][TOP]
>UniRef100_A9UEE2 DNA-directed RNA polymerase (Fragment) n=1 Tax=Cephaloboides cf.
armata SB363 RepID=A9UEE2_9BILA
Length = 475
Score = 129 bits (324), Expect = 1e-28
Identities = 71/156 (45%), Positives = 96/156 (61%)
Frame = +3
Query: 9 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
N++RLIWNA++IF V +DL+P +++ G+ L + V+ S ED
Sbjct: 181 NLQRLIWNAQKIFHVETRKPTDLNPLRVIEGIRELSTKL-VIVSGED------------- 226
Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
+S+ AQ NATLL + +R++L SK + S H+L +AF WLL EIE
Sbjct: 227 -------------RISQQAQYNATLLMNILIRSTLCSKKMASTHKLNSEAFEWLLGEIET 273
Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
RF+QA+A GEMVGA AAQS+GEPATQMTLNTFH+A
Sbjct: 274 RFKQAIAQPGEMVGALAAQSLGEPATQMTLNTFHFA 309
[89][TOP]
>UniRef100_A9QMQ7 DNA-directed RNA polymerase (Fragment) n=1 Tax=Phasmarhabditis sp.
EM434 RepID=A9QMQ7_9BILA
Length = 398
Score = 129 bits (324), Expect = 1e-28
Identities = 70/156 (44%), Positives = 96/156 (61%)
Frame = +3
Query: 9 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
N++RLIWNA++IF V +DL+P +++ GV L + ++ S ED
Sbjct: 191 NLQRLIWNAQKIFHVETRKPTDLNPLRVIEGVRELSKKL-IIVSGED------------- 236
Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
+S+ AQ NATLL + +R++L SK + + HRL +AF WLL E+E
Sbjct: 237 -------------RISKQAQYNATLLMNILIRSTLCSKKMATSHRLNSEAFEWLLGEVET 283
Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
RF+QA+A GEMVGA AAQS+GEPATQMTLNTFH+A
Sbjct: 284 RFKQAIAQPGEMVGALAAQSLGEPATQMTLNTFHFA 319
[90][TOP]
>UniRef100_C5YGY9 DNA-directed RNA polymerase n=1 Tax=Sorghum bicolor
RepID=C5YGY9_SORBI
Length = 1857
Score = 129 bits (323), Expect = 1e-28
Identities = 70/157 (44%), Positives = 95/157 (60%)
Frame = +3
Query: 6 VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLP 185
VN++RLIWNA++ F + SD+ P +IV V+ L R +V+ D+ ++A
Sbjct: 976 VNLKRLIWNAQKTFRIDFRRPSDMHPMEIVEAVDKLQERLKVVPGDDPMSIEA------- 1028
Query: 186 PDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIE 365
Q NATL F + +R++ ASK VL E+RLT++AF W++ EIE
Sbjct: 1029 --------------------QKNATLFFNILLRSTFASKRVLKEYRLTKEAFEWVIGEIE 1068
Query: 366 NRFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
+RF Q+L GEM+G AAQSIGEPATQMTLNTFHYA
Sbjct: 1069 SRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYA 1105
[91][TOP]
>UniRef100_B9FZ51 DNA-directed RNA polymerase n=1 Tax=Oryza sativa Japonica Group
RepID=B9FZ51_ORYSJ
Length = 1526
Score = 129 bits (323), Expect = 1e-28
Identities = 69/157 (43%), Positives = 95/157 (60%)
Frame = +3
Query: 6 VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLP 185
VN++RLIWNA++ F + SD+ P +IV ++ L R +V+ D+ ++A
Sbjct: 648 VNLKRLIWNAQKTFKIDLRRPSDMHPMEIVEAIDKLQERLKVVPGDDAMSIEA------- 700
Query: 186 PDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIE 365
Q NATL F + +R++ ASK VL E+RLT++AF W++ EIE
Sbjct: 701 --------------------QKNATLFFNILLRSTFASKRVLKEYRLTKEAFEWVIGEIE 740
Query: 366 NRFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
+RF Q+L GEM+G AAQSIGEPATQMTLNTFHYA
Sbjct: 741 SRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYA 777
[92][TOP]
>UniRef100_B8BAW1 DNA-directed RNA polymerase n=1 Tax=Oryza sativa Indica Group
RepID=B8BAW1_ORYSI
Length = 1449
Score = 129 bits (323), Expect = 1e-28
Identities = 69/157 (43%), Positives = 95/157 (60%)
Frame = +3
Query: 6 VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLP 185
VN++RLIWNA++ F + SD+ P +IV ++ L R +V+ D+ ++A
Sbjct: 947 VNLKRLIWNAQKTFKIDLRRPSDMHPMEIVEAIDKLQERLKVVPGDDAMSIEA------- 999
Query: 186 PDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIE 365
Q NATL F + +R++ ASK VL E+RLT++AF W++ EIE
Sbjct: 1000 --------------------QKNATLFFNILLRSTFASKRVLKEYRLTKEAFEWVIGEIE 1039
Query: 366 NRFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
+RF Q+L GEM+G AAQSIGEPATQMTLNTFHYA
Sbjct: 1040 SRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYA 1076
[93][TOP]
>UniRef100_P90678 DNA-directed RNA polymerase (Fragment) n=1 Tax=Aduncospiculum
halicti RepID=P90678_9BILA
Length = 631
Score = 129 bits (323), Expect = 1e-28
Identities = 69/156 (44%), Positives = 95/156 (60%)
Frame = +3
Query: 9 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
N++RLIWNA++IF V +DL+P ++++GV + + ++ D+
Sbjct: 187 NLQRLIWNAQKIFHVETRKVTDLNPVRVIQGVREVSKKLIIVGGDD-------------- 232
Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
+S AQ NATLL + VR++L +K + +H+L +AF WLL EIE
Sbjct: 233 -------------RISVQAQYNATLLMNILVRSTLCAKAMAEKHKLNAEAFEWLLGEIET 279
Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
RFQQA+A GEMVGA AAQS+GEPATQMTLNTFHYA
Sbjct: 280 RFQQAIAQPGEMVGALAAQSLGEPATQMTLNTFHYA 315
[94][TOP]
>UniRef100_A9U396 DNA-directed RNA polymerase n=1 Tax=Physcomitrella patens subsp.
patens RepID=A9U396_PHYPA
Length = 1742
Score = 128 bits (322), Expect = 2e-28
Identities = 72/157 (45%), Positives = 95/157 (60%)
Frame = +3
Query: 6 VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLP 185
VN++RLIWNA++IF V SD+ P +IV VE L R RV+ ++
Sbjct: 980 VNLKRLIWNAQKIFKVDLRKSSDMHPMEIVEAVENLQERLRVVPGND------------- 1026
Query: 186 PDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIE 365
++S AQ NATL F +R++LASK VL ++RLTR+AF W++ E+E
Sbjct: 1027 --------------QISMEAQRNATLFFGCLLRSTLASKRVLKDYRLTREAFEWVIGEVE 1072
Query: 366 NRFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
RF +L GEM+G AAQSIGEPATQMTLNTFH+A
Sbjct: 1073 TRFLMSLVAPGEMIGCVAAQSIGEPATQMTLNTFHFA 1109
[95][TOP]
>UniRef100_Q2N162 DNA-directed RNA polymerase II largest subunit (Fragment) n=1
Tax=Suberites fuscus RepID=Q2N162_9METZ
Length = 260
Score = 128 bits (322), Expect = 2e-28
Identities = 73/157 (46%), Positives = 96/157 (61%)
Frame = +3
Query: 6 VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLP 185
VN+ RLIWNA++IF V ++DL P K+V GV L ++ ++ ++
Sbjct: 129 VNLNRLIWNAQKIFHVDIRGQTDLHPLKVVEGVRDLSNKLIIVQGED------------- 175
Query: 186 PDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIE 365
ELS+ AQ NATLLF+ +R+ L +K + EH+L +AF W+L EIE
Sbjct: 176 --------------ELSKQAQTNATLLFKSLLRSVLCTKKMSEEHKLNLEAFEWVLGEIE 221
Query: 366 NRFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
RFQQA A GEMVGA AAQS+GEPATQMTLNTFH+A
Sbjct: 222 TRFQQAQAQPGEMVGALAAQSLGEPATQMTLNTFHFA 258
[96][TOP]
>UniRef100_UPI0000D5670C PREDICTED: similar to GA13798-PA n=1 Tax=Tribolium castaneum
RepID=UPI0000D5670C
Length = 2007
Score = 128 bits (321), Expect = 2e-28
Identities = 72/156 (46%), Positives = 97/156 (62%)
Frame = +3
Query: 9 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
N++R+IWN ++IF + + +DLSP ++++GV LL++ V+ + ED
Sbjct: 978 NLQRMIWNVQKIFHINKRAPTDLSPLRVIQGVRELLNKC-VIVAGED------------- 1023
Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
LS+ A NATLLFQ VR++L +K V E RL+ +AF WL+ EIE
Sbjct: 1024 -------------RLSKQANENATLLFQCLVRSTLCTKCVSEEFRLSTEAFEWLIGEIET 1070
Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
RFQQA GEMVGA AAQS+GEPATQMTLNTFH+A
Sbjct: 1071 RFQQAQVNPGEMVGALAAQSLGEPATQMTLNTFHFA 1106
[97][TOP]
>UniRef100_C5Y387 DNA-directed RNA polymerase n=1 Tax=Sorghum bicolor
RepID=C5Y387_SORBI
Length = 1874
Score = 128 bits (321), Expect = 2e-28
Identities = 73/157 (46%), Positives = 95/157 (60%)
Frame = +3
Query: 6 VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLP 185
VN++RLIWNA++ F + SD+ P +IV ++ L R +V+ D DAI+ E
Sbjct: 977 VNLKRLIWNAQKTFKIDIRTCSDMHPIEIVEAIDKLQERLKVVPGD-----DAISIE--- 1028
Query: 186 PDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIE 365
AQ NATL F +H+RA+ ASK VL E+RLTR+AF W++ EI
Sbjct: 1029 -------------------AQKNATLFFNIHLRATFASKRVLREYRLTREAFEWIIDEIV 1069
Query: 366 NRFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
RF Q+L EM+G AAQSIGEPATQMTLNTFH+A
Sbjct: 1070 WRFSQSLVAPSEMIGCVAAQSIGEPATQMTLNTFHFA 1106
[98][TOP]
>UniRef100_O01370 DNA-directed RNA polymerase (Fragment) n=1 Tax=Mesorhabditis sp.
RepID=O01370_9BILA
Length = 633
Score = 128 bits (321), Expect = 2e-28
Identities = 68/156 (43%), Positives = 97/156 (62%)
Frame = +3
Query: 9 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
N++RLIWNA++IF V ++LSP +++ GV L + +++ D+
Sbjct: 187 NLQRLIWNAQKIFKVETRKPTNLSPLRVIEGVRELSKKLIIVSGDD-------------- 232
Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
+S+ AQ NATLL + +R++L SK + ++RL ++ F WLL EIE+
Sbjct: 233 -------------RISQQAQYNATLLMNILLRSTLCSKQMAEKYRLNQEGFEWLLGEIEH 279
Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
RFQQA+A GEMVGA AAQS+GEPATQMTLNTFH+A
Sbjct: 280 RFQQAIAQPGEMVGALAAQSLGEPATQMTLNTFHFA 315
[99][TOP]
>UniRef100_A9QMT2 RNA polymerase 2 (Fragment) n=1 Tax=Pellioditis typica
RepID=A9QMT2_9PELO
Length = 488
Score = 128 bits (321), Expect = 2e-28
Identities = 67/156 (42%), Positives = 96/156 (61%)
Frame = +3
Query: 9 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
N++RLIWNA++IF V +DL+P +++ GV L + +++ D+
Sbjct: 173 NLQRLIWNAQKIFHVETRKPTDLNPLRVIEGVRELSEKLVIVSGDD-------------- 218
Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
+S+ AQ NATLL + +R++L SK + S +RL +AF W+L E+E
Sbjct: 219 -------------RISKQAQYNATLLMNILIRSTLCSKKMASTYRLNSEAFEWMLGEVET 265
Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
RF+QA+A GEMVGA AAQS+GEPATQMTLNTFH+A
Sbjct: 266 RFKQAIAQPGEMVGALAAQSLGEPATQMTLNTFHFA 301
[100][TOP]
>UniRef100_A9QME0 DNA-directed RNA polymerase (Fragment) n=1 Tax=Pellioditis typica
RepID=A9QME0_9PELO
Length = 633
Score = 128 bits (321), Expect = 2e-28
Identities = 67/156 (42%), Positives = 96/156 (61%)
Frame = +3
Query: 9 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
N++RLIWNA++IF V +DL+P +++ GV L + +++ D+
Sbjct: 187 NLQRLIWNAQKIFHVETRKPTDLNPLRVIEGVRELSEKLVIVSGDD-------------- 232
Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
+S+ AQ NATLL + +R++L SK + S +RL +AF W+L E+E
Sbjct: 233 -------------RISKQAQYNATLLMNILIRSTLCSKKMASTYRLNSEAFEWMLGEVET 279
Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
RF+QA+A GEMVGA AAQS+GEPATQMTLNTFH+A
Sbjct: 280 RFKQAIAQPGEMVGALAAQSLGEPATQMTLNTFHFA 315
[101][TOP]
>UniRef100_P35084 DNA-directed RNA polymerase II subunit rpb1 n=1 Tax=Dictyostelium
discoideum RepID=RPB1_DICDI
Length = 1727
Score = 128 bits (321), Expect = 2e-28
Identities = 73/157 (46%), Positives = 97/157 (61%)
Frame = +3
Query: 6 VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLP 185
VN+ RLI NA+++F++ SDL+P+ +V +E L+ R +++ + + E
Sbjct: 968 VNLRRLINNAQKLFNIDIRRVSDLNPAVVVLEIEKLVARLKIIATADTTE---------- 1017
Query: 186 PDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIE 365
DE NAT+LF + VR++ ASK VL+E RLT KAF W+ EIE
Sbjct: 1018 --------DDENFNRAWAEVYFNATMLFSILVRSTFASKRVLTEFRLTEKAFLWVCGEIE 1069
Query: 366 NRFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
++F QALA GEMVGA AAQSIGEPATQMTLNTFHYA
Sbjct: 1070 SKFLQALAHPGEMVGALAAQSIGEPATQMTLNTFHYA 1106
[102][TOP]
>UniRef100_UPI0000F2BF13 PREDICTED: similar to RNA polymerase II isoform 2 n=1 Tax=Monodelphis
domestica RepID=UPI0000F2BF13
Length = 1932
Score = 127 bits (320), Expect = 3e-28
Identities = 74/156 (47%), Positives = 96/156 (61%)
Frame = +3
Query: 9 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
N+ R+IWNA++IF + SDL P K+V GV+ L + V+ + ED
Sbjct: 982 NLLRMIWNAQKIFHINPRLPSDLHPIKVVDGVKELSKKL-VIVNGEDP------------ 1028
Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
LS AQ NATLLF +H+R++L S+ + E RL+ +AF WLL EIE+
Sbjct: 1029 --------------LSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIES 1074
Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
+F QA+A GEMVGA AAQS+GEPATQMTLNTFHYA
Sbjct: 1075 KFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYA 1110
[103][TOP]
>UniRef100_UPI0000F2BF12 PREDICTED: similar to RNA polymerase II isoform 1 n=1 Tax=Monodelphis
domestica RepID=UPI0000F2BF12
Length = 1970
Score = 127 bits (320), Expect = 3e-28
Identities = 74/156 (47%), Positives = 96/156 (61%)
Frame = +3
Query: 9 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
N+ R+IWNA++IF + SDL P K+V GV+ L + V+ + ED
Sbjct: 982 NLLRMIWNAQKIFHINPRLPSDLHPIKVVDGVKELSKKL-VIVNGEDP------------ 1028
Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
LS AQ NATLLF +H+R++L S+ + E RL+ +AF WLL EIE+
Sbjct: 1029 --------------LSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIES 1074
Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
+F QA+A GEMVGA AAQS+GEPATQMTLNTFHYA
Sbjct: 1075 KFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYA 1110
[104][TOP]
>UniRef100_Q99368 DNA-directed RNA polymerase (Fragment) n=1 Tax=Glycine max
RepID=Q99368_SOYBN
Length = 977
Score = 127 bits (320), Expect = 3e-28
Identities = 73/157 (46%), Positives = 98/157 (62%)
Frame = +3
Query: 6 VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLP 185
VN++RLIWNA++ F V SD+ P +IV ++ L R +V+ EDA
Sbjct: 169 VNLKRLIWNAQKTFKVDFRRPSDMHPMEIVEAIDKLQERLKVVPG-EDA----------- 216
Query: 186 PDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIE 365
LS+ AQ NATLLF + +R++ ASK VL E+RL+R++F W++ EIE
Sbjct: 217 ---------------LSQEAQKNATLLFNILLRSTFASKRVLEEYRLSRESFEWVVGEIE 261
Query: 366 NRFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
+RF Q+L GEM+G AAQSIGEPATQMTLNTFH+A
Sbjct: 262 SRFLQSLVVPGEMIGVVAAQSIGEPATQMTLNTFHFA 298
[105][TOP]
>UniRef100_Q6GYH6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Prodontorhabditis
wirthi RepID=Q6GYH6_9BILA
Length = 630
Score = 127 bits (320), Expect = 3e-28
Identities = 69/156 (44%), Positives = 95/156 (60%)
Frame = +3
Query: 9 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
N++RLIWNA++IF V + L+P K+++GV L + ++ ++
Sbjct: 193 NLQRLIWNAQKIFHVEMRKPTTLNPMKVIQGVRELSKKLIIVNGED-------------- 238
Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
+S+ AQ NATLL + +R++L SK + S ++L +AF WLL EIEN
Sbjct: 239 -------------RISKQAQYNATLLTNILIRSTLCSKKMASTYKLDSEAFDWLLGEIEN 285
Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
RFQ A+A GEMVGA AAQS+GEPATQMTLNTFHYA
Sbjct: 286 RFQSAIAQPGEMVGALAAQSLGEPATQMTLNTFHYA 321
[106][TOP]
>UniRef100_A9QMG8 RNA polymerase 2 (Fragment) n=1 Tax=rhabditoid sp. PDL15
RepID=A9QMG8_9BILA
Length = 587
Score = 127 bits (320), Expect = 3e-28
Identities = 69/156 (44%), Positives = 95/156 (60%)
Frame = +3
Query: 9 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
N++RLIWNA++IF V ++L+P +++ GV L + ++ ++
Sbjct: 175 NLQRLIWNAQKIFHVETRKXTELNPLRVIEGVRDLSKKLVIVXGED-------------- 220
Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
+S+ AQ NATLL + +R++L SK V ++RL +AF WLL EIE
Sbjct: 221 -------------RISKQAQYNATLLMNILLRSTLCSKQVAEKYRLNSEAFEWLLGEIET 267
Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
RFQQA+A GEMVGA AAQS+GEPATQMTLNTFHYA
Sbjct: 268 RFQQAIAQPGEMVGALAAQSLGEPATQMTLNTFHYA 303
[107][TOP]
>UniRef100_UPI00016E658E UPI00016E658E related cluster n=1 Tax=Takifugu rubripes
RepID=UPI00016E658E
Length = 1628
Score = 127 bits (319), Expect = 4e-28
Identities = 69/156 (44%), Positives = 93/156 (59%)
Frame = +3
Query: 9 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
N+ R+IWNA++IF + +DLSP ++V G L + ++ D+
Sbjct: 980 NLARMIWNAQKIFRINTRTPTDLSPLRVVEGTHDLSKKLVIVNGDDP------------- 1026
Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
LS+ AQ NATLLF +H+R++L SK + E RL+ +AF WLL EIE
Sbjct: 1027 --------------LSKQAQQNATLLFNIHLRSTLCSKRMTEEFRLSTEAFDWLLGEIET 1072
Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
+F ++A GEMVGA AAQS+GEPATQMTLNTFHYA
Sbjct: 1073 KFNHSIAHPGEMVGALAAQSLGEPATQMTLNTFHYA 1108
[108][TOP]
>UniRef100_A9QMH3 DNA-directed RNA polymerase (Fragment) n=1 Tax=Rhabditis sp. PS1130
RepID=A9QMH3_9BILA
Length = 619
Score = 127 bits (319), Expect = 4e-28
Identities = 69/156 (44%), Positives = 98/156 (62%)
Frame = +3
Query: 9 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
N++RL+WNA++IF V +DL+P +++ GV L + ++ S ED
Sbjct: 183 NLQRLLWNAQKIFHVETRKPTDLNPLRVIEGVRELSKKL-IIVSGED------------- 228
Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
++S+ AQ NATLL + VR++L SK + S+++L +AF WLL E+E
Sbjct: 229 -------------KISKQAQYNATLLMNILVRSTLCSKKMASKYKLNSEAFEWLLGEVET 275
Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
RF+QA+A GEMVGA AAQS+GEPATQMTLNTFH+A
Sbjct: 276 RFKQAIAQPGEMVGALAAQSLGEPATQMTLNTFHFA 311
[109][TOP]
>UniRef100_A9QME1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Rhabditis brassicae
RepID=A9QME1_9BILA
Length = 628
Score = 127 bits (319), Expect = 4e-28
Identities = 69/156 (44%), Positives = 97/156 (62%)
Frame = +3
Query: 9 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
N++RL+WNA++IF V +DL+P +++ GV L + ++ S ED
Sbjct: 184 NLQRLLWNAQKIFHVETRKPTDLNPLRVIEGVRELSQKL-IIVSGED------------- 229
Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
+S+ AQ NATLL + VR++L SK + S+++L +AF WLL E+E
Sbjct: 230 -------------RISKQAQYNATLLMNILVRSTLCSKKMASKYKLNSEAFEWLLGEVET 276
Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
RF+QA+A GEMVGA AAQS+GEPATQMTLNTFH+A
Sbjct: 277 RFKQAIAQPGEMVGALAAQSLGEPATQMTLNTFHFA 312
[110][TOP]
>UniRef100_Q25203 DNA-directed RNA polymerase (Fragment) n=1 Tax=Ilyanassa obsoleta
RepID=Q25203_9CAEN
Length = 1343
Score = 127 bits (318), Expect = 5e-28
Identities = 71/156 (45%), Positives = 92/156 (58%)
Frame = +3
Query: 9 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
N++R+IWNA++IF + + SDL P +V GV L R ++ ++
Sbjct: 896 NLQRMIWNAQKIFRIDKRKPSDLDPINVVSGVRDLCQRLTIVEGED-------------- 941
Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
+S+ A NATLL + +R++L +K V EHRL+ AF WLL EIE
Sbjct: 942 -------------MISKQANENATLLMKCLIRSTLCAKRVAEEHRLSEDAFNWLLGEIET 988
Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
RFQQA A GEMVGA AAQS+GEPATQMTLNTFHYA
Sbjct: 989 RFQQAQAHPGEMVGALAAQSLGEPATQMTLNTFHYA 1024
[111][TOP]
>UniRef100_O35559 DNA-directed RNA polymerase n=1 Tax=Cricetulus griseus
RepID=O35559_CRIGR
Length = 1970
Score = 126 bits (317), Expect = 7e-28
Identities = 71/156 (45%), Positives = 94/156 (60%)
Frame = +3
Query: 9 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
N+ R+IWNA++IF + SDL K+V GV+ L + ++ D+
Sbjct: 982 NLLRMIWNAQKIFHINPRLPSDLHSIKVVEGVKELSKKLVIVNGDDP------------- 1028
Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
LS AQ NATLLF +H+R++L S+ + E RL+ +AF WLL EIE+
Sbjct: 1029 --------------LSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIES 1074
Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
+F QA+A GEMVGA AAQS+GEPATQMTLNTFHYA
Sbjct: 1075 KFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYA 1110
[112][TOP]
>UniRef100_Q23699 DNA-directed RNA polymerase (Fragment) n=1 Tax=Crassostrea gigas
RepID=Q23699_CRAGI
Length = 1340
Score = 126 bits (317), Expect = 7e-28
Identities = 72/156 (46%), Positives = 94/156 (60%)
Frame = +3
Query: 9 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
N++R+IWNA++IF + + +DL P K+V GVE L R V+ +
Sbjct: 893 NLQRMIWNAQKIFRIDTHKPTDLHPIKVVEGVEDLCKRLIVVAGGD-------------- 938
Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
LS A NATLLF+ +R++L +K V E RL+ +AF WL+ E+E+
Sbjct: 939 -------------RLSIQANANATLLFKCLIRSTLCAKRVTEEFRLSSEAFEWLIGEVES 985
Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
RFQQA A GEMVGA AAQS+GEPATQMTLNTFHYA
Sbjct: 986 RFQQAQAHPGEMVGALAAQSLGEPATQMTLNTFHYA 1021
[113][TOP]
>UniRef100_A9QME6 RNA polymerase 2 (Fragment) n=1 Tax=Pellioditis sp. JU274
RepID=A9QME6_9PELO
Length = 526
Score = 126 bits (317), Expect = 7e-28
Identities = 70/156 (44%), Positives = 96/156 (61%)
Frame = +3
Query: 9 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
N+ RLIWNA++IF V ++L+P++++ GV L + ++ S ED
Sbjct: 88 NLNRLIWNAQKIFKVETRKLTNLNPTRVIDGVRNLSKKL-IIVSGED------------- 133
Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
+S+ AQ NATLL + +R++L SK + S ++L +AF WLL E+E
Sbjct: 134 -------------RISKQAQYNATLLMNILLRSTLCSKKMASTYKLNAEAFEWLLGEVET 180
Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
RFQQA+A GEMVGA AAQS+GEPATQMTLNTFHYA
Sbjct: 181 RFQQAIAQPGEMVGALAAQSLGEPATQMTLNTFHYA 216
[114][TOP]
>UniRef100_P91819 DNA-directed RNA polymerase (Fragment) n=1 Tax=Zeldia punctata
RepID=P91819_ZELPU
Length = 629
Score = 126 bits (316), Expect = 9e-28
Identities = 73/156 (46%), Positives = 93/156 (59%)
Frame = +3
Query: 9 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
N++RLIWNA +IF V DL+P ++V GV L ++ V+ S ED
Sbjct: 184 NLKRLIWNAHKIFHVDLKKPVDLNPLRVVEGVREL-NKKLVIVSGED------------- 229
Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
+S+ AQ NATLL + +R++L SK V H+L +AF W+L EIE
Sbjct: 230 -------------RISKQAQYNATLLMNILLRSTLCSKQVAKVHKLNTEAFEWILGEIET 276
Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
RF QA+A GEMVGA AAQS+GEPATQMTLNTFHYA
Sbjct: 277 RFNQAIAQPGEMVGALAAQSLGEPATQMTLNTFHYA 312
[115][TOP]
>UniRef100_O01364 DNA-directed RNA polymerase (Fragment) n=1 Tax=Cruznema tripartitum
RepID=O01364_9BILA
Length = 633
Score = 126 bits (316), Expect = 9e-28
Identities = 69/156 (44%), Positives = 95/156 (60%)
Frame = +3
Query: 9 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
N++RL+WNA++IF V +DL+P +++ GV L + V+ ED
Sbjct: 187 NLKRLLWNAQKIFHVEMRKPTDLNPLRVIEGVRELSKKL-VIVGGED------------- 232
Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
+S+ AQ NATLL + +R++L SK + S ++L ++AF WLL E+E
Sbjct: 233 -------------RISKQAQYNATLLMNILLRSTLCSKQMASHYKLNQEAFDWLLGEVET 279
Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
RFQQ +A GEMVGA AAQS+GEPATQMTLNTFHYA
Sbjct: 280 RFQQPIAQPGEMVGALAAQSLGEPATQMTLNTFHYA 315
[116][TOP]
>UniRef100_A9QMG7 RNA polymerase 2 (Fragment) n=1 Tax=Distolabrellus veechi
RepID=A9QMG7_9BILA
Length = 583
Score = 126 bits (316), Expect = 9e-28
Identities = 68/156 (43%), Positives = 94/156 (60%)
Frame = +3
Query: 9 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
N++RLIWNA++IF V S L+P +++ GV + + ++ D+
Sbjct: 174 NLQRLIWNAQKIFKVETRKPSSLNPLRVIEGVREMSKKLIIVCGDD-------------- 219
Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
+S+ AQ NATLL + VR++L SK + ++RL +AF WLL EIE+
Sbjct: 220 -------------RISKHAQYNATLLMNILVRSTLCSKQMADKYRLNEEAFEWLLGEIEH 266
Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
RFQQA+ GEMVGA AAQS+GEPATQMTLNTFH+A
Sbjct: 267 RFQQAIVQPGEMVGALAAQSLGEPATQMTLNTFHFA 302
[117][TOP]
>UniRef100_A9QMF2 DNA-directed RNA polymerase (Fragment) n=1 Tax=Pelodera teres
RepID=A9QMF2_9PELO
Length = 629
Score = 126 bits (316), Expect = 9e-28
Identities = 69/156 (44%), Positives = 94/156 (60%)
Frame = +3
Query: 9 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
N++RLIWNA++IF V + L+P ++V+GV L + ++ D+
Sbjct: 187 NLQRLIWNAQKIFKVETRKVTALNPLRVVQGVRDLSKKLIIVMGDD-------------- 232
Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
+S+ AQ NATLL + +R++L SK + +HRL AF WLL EIE+
Sbjct: 233 -------------RISKQAQYNATLLVNILIRSTLCSKQMSEKHRLNESAFDWLLGEIEH 279
Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
RFQQA+ GEMVGA AAQS+GEPATQMTLNTFH+A
Sbjct: 280 RFQQAIVQPGEMVGALAAQSLGEPATQMTLNTFHFA 315
[118][TOP]
>UniRef100_UPI000186D846 predicted protein n=1 Tax=Pediculus humanus corporis
RepID=UPI000186D846
Length = 1885
Score = 125 bits (315), Expect = 1e-27
Identities = 71/156 (45%), Positives = 95/156 (60%)
Frame = +3
Query: 9 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
N++R+IWN ++IF + + +DLSP +++ GV LL + V+ + ED
Sbjct: 967 NLQRMIWNVQKIFHINKRAPTDLSPLRVIEGVRDLLQKC-VIVAGED------------- 1012
Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
LS+ A NATLLFQ VR++L +K V + RL+ +AF WL+ EIE
Sbjct: 1013 -------------HLSKQANENATLLFQCLVRSTLCTKCVSEDMRLSTEAFEWLIGEIET 1059
Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
RFQQA GEMVGA AAQS+GEPATQMTLNTFH+A
Sbjct: 1060 RFQQAQCAPGEMVGALAAQSLGEPATQMTLNTFHFA 1095
[119][TOP]
>UniRef100_A9QMP5 DNA-directed RNA polymerase (Fragment) n=1 Tax=Oscheius insectivora
RepID=A9QMP5_9BILA
Length = 474
Score = 125 bits (315), Expect = 1e-27
Identities = 66/156 (42%), Positives = 96/156 (61%)
Frame = +3
Query: 9 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
N++RLIWNA++IF V + L+P ++++GV L + ++ D+
Sbjct: 180 NLQRLIWNAQKIFHVETRQPTSLNPLRVIQGVRELSEKLVIVCGDD-------------- 225
Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
+S+ AQ NATLL + +R++L SK + + ++L ++AF WLL E+E
Sbjct: 226 -------------RISKQAQYNATLLMNILLRSTLCSKKMATTYKLNQEAFEWLLGEVET 272
Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
RF+QA+A GEMVGA AAQS+GEPATQMTLNTFHYA
Sbjct: 273 RFKQAIAQPGEMVGALAAQSLGEPATQMTLNTFHYA 308
[120][TOP]
>UniRef100_A9QMP3 DNA-directed RNA polymerase (Fragment) n=1 Tax=Rhabditis brassicae
RepID=A9QMP3_9BILA
Length = 406
Score = 125 bits (315), Expect = 1e-27
Identities = 66/156 (42%), Positives = 96/156 (61%)
Frame = +3
Query: 9 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
N++RL+WNA++IF V +DL+P +++ GV L + +++ +
Sbjct: 191 NLQRLLWNAQKIFHVETRKPTDLNPLRVIEGVRELSQKLIIVSGEN-------------- 236
Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
+S+ AQ NATLL + VR++L SK + S+++L +AF WLL E+E
Sbjct: 237 -------------RISKQAQYNATLLMNILVRSTLCSKKMASKYKLNSEAFEWLLGEVET 283
Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
RF+QA+A GEMVGA AAQS+GEPATQMTLNTFH+A
Sbjct: 284 RFKQAIAQPGEMVGALAAQSLGEPATQMTLNTFHFA 319
[121][TOP]
>UniRef100_A9QMH1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Acrobeles maximus
RepID=A9QMH1_9BILA
Length = 616
Score = 125 bits (315), Expect = 1e-27
Identities = 71/156 (45%), Positives = 93/156 (59%)
Frame = +3
Query: 9 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
N++RLIWNA++IF V DL+P +++ GV L + ++ S ED
Sbjct: 191 NLKRLIWNAQKIFHVDLRKTVDLNPVRVIEGVRELSKKL-IIVSGED------------- 236
Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
+S+ AQ NATLL + +R++L SK V H+L +AF W+L EIE
Sbjct: 237 -------------RISKQAQYNATLLMNILLRSTLCSKQVAKVHKLNTEAFEWILGEIET 283
Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
RF QA+A GEMVGA AAQS+GEPATQMTLNTFHYA
Sbjct: 284 RFNQAIAQPGEMVGALAAQSLGEPATQMTLNTFHYA 319
[122][TOP]
>UniRef100_A9QMG0 DNA-directed RNA polymerase (Fragment) n=1 Tax=Oscheius tipulae
RepID=A9QMG0_OSCTI
Length = 629
Score = 125 bits (315), Expect = 1e-27
Identities = 69/156 (44%), Positives = 95/156 (60%)
Frame = +3
Query: 9 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
N++RLIWNA++IF V + + L+P ++RGV+ L + ++ ED
Sbjct: 191 NLQRLIWNAQKIFHVETREVTSLNPLAVIRGVKNLSDKL-IIVGGED------------- 236
Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
+S AQ NATLL + +R++L SK + + H+L ++AF WLL EIE
Sbjct: 237 -------------RISRQAQFNATLLMNILLRSTLCSKKMATTHKLNQEAFDWLLGEIET 283
Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
RF+ A+A GEMVGA AAQS+GEPATQMTLNTFHYA
Sbjct: 284 RFKSAIAQPGEMVGALAAQSLGEPATQMTLNTFHYA 319
[123][TOP]
>UniRef100_A9QME4 RNA polymerase 2 (Fragment) n=1 Tax=Oscheius tipulae
RepID=A9QME4_OSCTI
Length = 446
Score = 125 bits (315), Expect = 1e-27
Identities = 69/156 (44%), Positives = 95/156 (60%)
Frame = +3
Query: 9 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
N++RLIWNA++IF V + + L+P ++RGV+ L + ++ ED
Sbjct: 13 NLQRLIWNAQKIFHVETREVTSLNPLAVIRGVKNLSDKL-IIVGGED------------- 58
Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
+S AQ NATLL + +R++L SK + + H+L ++AF WLL EIE
Sbjct: 59 -------------RISRQAQFNATLLMNILLRSTLCSKKMATTHKLNQEAFDWLLGEIET 105
Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
RF+ A+A GEMVGA AAQS+GEPATQMTLNTFHYA
Sbjct: 106 RFKSAIAQPGEMVGALAAQSLGEPATQMTLNTFHYA 141
[124][TOP]
>UniRef100_Q17085 DNA-directed RNA polymerase (Fragment) n=1 Tax=Artemia salina
RepID=Q17085_ARTSA
Length = 1341
Score = 125 bits (314), Expect = 1e-27
Identities = 72/156 (46%), Positives = 97/156 (62%)
Frame = +3
Query: 9 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
N++R+IWNA++ F + + SDLSP ++++GV LL + V+ + ED
Sbjct: 894 NLQRMIWNAQKTFHINKRMPSDLSPLRVIQGVRDLL-KNCVIVNGED------------- 939
Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
+LS+ A NATLLFQ VR++L +K + E+RL +AF WL+ EIE
Sbjct: 940 -------------KLSKQANENATLLFQCLVRSTLCTKRLADEYRLNTEAFEWLIGEIET 986
Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
RFQ A A GEMVGA AAQS+GEPATQMTLNTFH+A
Sbjct: 987 RFQLAQAVPGEMVGAIAAQSLGEPATQMTLNTFHFA 1022
[125][TOP]
>UniRef100_Q9C428 DNA-directed RNA polymerase (Fragment) n=1 Tax=Monoblepharis
macrandra RepID=Q9C428_9FUNG
Length = 1603
Score = 125 bits (314), Expect = 1e-27
Identities = 75/156 (48%), Positives = 90/156 (57%)
Frame = +3
Query: 9 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
NI RLIWNA+ + + N S+L P +IVR V LL R V+T ++
Sbjct: 905 NIRRLIWNARNMAKISHNTLSNLRPEEIVRDVNDLLSRCIVITGEDG------------- 951
Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
LS AQ NATLLF + VR LA+K V +EHRL R AF WL+ EIE+
Sbjct: 952 --------------LSTMAQHNATLLFNILVRHLLATKRVYAEHRLNRNAFRWLIGEIES 997
Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
RF+ A EMVG AAQSIGEPATQMTLNTFH+A
Sbjct: 998 RFKAAKVNPAEMVGTIAAQSIGEPATQMTLNTFHFA 1033
[126][TOP]
>UniRef100_P18616 DNA-directed RNA polymerase II subunit RPB1 n=1 Tax=Arabidopsis
thaliana RepID=RPB1_ARATH
Length = 1840
Score = 125 bits (314), Expect = 1e-27
Identities = 72/157 (45%), Positives = 94/157 (59%)
Frame = +3
Query: 6 VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLP 185
VNI+R IWNA++ F + SD+ P +IV V+ L R V+ D+
Sbjct: 979 VNIKRHIWNAQKTFKIDLRKISDMHPVEIVDAVDKLQERLLVVPGDD------------- 1025
Query: 186 PDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIE 365
LS AQ NATL F + +R++LASK VL E++L+R+AF W++ EIE
Sbjct: 1026 --------------ALSVEAQKNATLFFNILLRSTLASKRVLEEYKLSREAFEWVIGEIE 1071
Query: 366 NRFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
+RF Q+L GEM+G AAQSIGEPATQMTLNTFHYA
Sbjct: 1072 SRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYA 1108
[127][TOP]
>UniRef100_A7R1R2 DNA-directed RNA polymerase n=1 Tax=Vitis vinifera
RepID=A7R1R2_VITVI
Length = 429
Score = 125 bits (313), Expect = 2e-27
Identities = 72/157 (45%), Positives = 97/157 (61%)
Frame = +3
Query: 6 VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLP 185
VN++RLIWNA++ F + SD+ +IV V+ L R +V+ D D I+ E
Sbjct: 234 VNLKRLIWNAQKTFKIDLRRPSDMHLMEIVEAVDKLQERLKVVPGD-----DLISME--- 285
Query: 186 PDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIE 365
AQ NATLLF + +R++ +SK VL+E+RL+R+AF W++ EIE
Sbjct: 286 -------------------AQKNATLLFNILLRSTFSSKRVLNEYRLSREAFDWVIGEIE 326
Query: 366 NRFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
+RF Q+L GEM+G AAQSIGEPATQMTLNTFHYA
Sbjct: 327 SRFLQSLVSPGEMIGCIAAQSIGEPATQMTLNTFHYA 363
[128][TOP]
>UniRef100_A9QMG1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Oscheius
dolichuroides RepID=A9QMG1_9BILA
Length = 629
Score = 125 bits (313), Expect = 2e-27
Identities = 67/156 (42%), Positives = 95/156 (60%)
Frame = +3
Query: 9 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
N++RLIWNA++IF V + + L+P ++RGV L + ++ D+
Sbjct: 194 NLQRLIWNAQKIFHVEKREPVCLNPLNVIRGVRSLSEKLIIVGGDD-------------- 239
Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
+S+ AQ NATLL + +R++L +K + + H+L ++AF WLL EIE
Sbjct: 240 -------------RISKQAQYNATLLMNILLRSTLCAKKMATTHKLNQEAFEWLLGEIET 286
Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
RF+ A+A GEMVGA AAQS+GEPATQMTLNTFHYA
Sbjct: 287 RFKAAIAQPGEMVGALAAQSLGEPATQMTLNTFHYA 322
[129][TOP]
>UniRef100_Q6E228 DNA-directed RNA polymerase (Fragment) n=1 Tax=Rhabditella axei
RepID=Q6E228_9BILA
Length = 621
Score = 124 bits (312), Expect = 3e-27
Identities = 67/156 (42%), Positives = 97/156 (62%)
Frame = +3
Query: 9 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
N++RLIWNA++IF V +DL+P +++ G++ L + ++ S ED
Sbjct: 191 NLQRLIWNAQKIFHVETRKPTDLNPLRVIDGIKELSSKL-IIVSGED------------- 236
Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
+S+ AQ NATLL + +R++L SK + S ++L ++F WL+ EIE
Sbjct: 237 -------------RISQQAQYNATLLMNILIRSTLCSKKMASTYKLNAESFEWLIGEIET 283
Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
RF+QA+A GEMVGA AAQS+GEPATQMTLNTFH+A
Sbjct: 284 RFKQAIAQPGEMVGALAAQSLGEPATQMTLNTFHFA 319
[130][TOP]
>UniRef100_C3ZES3 DNA-directed RNA polymerase n=1 Tax=Branchiostoma floridae
RepID=C3ZES3_BRAFL
Length = 1934
Score = 124 bits (312), Expect = 3e-27
Identities = 69/156 (44%), Positives = 91/156 (58%)
Frame = +3
Query: 9 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
N+ R+IWNA++IF V +DL P K+V GV L + ++ D+ + A
Sbjct: 978 NLARIIWNAQKIFHVNTRAPTDLHPIKVVEGVRDLSRKLVIVKGDDPISIQA-------- 1029
Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
Q NAT+LF +R++L ++ VL E RL+ +AF WLL EIE+
Sbjct: 1030 -------------------QANATILFNTLLRSTLCTRRVLEEFRLSTEAFDWLLGEIES 1070
Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
RF QA+ GEMVGA AAQS+GEPATQMTLNTFHYA
Sbjct: 1071 RFNQAIVQPGEMVGALAAQSLGEPATQMTLNTFHYA 1106
[131][TOP]
>UniRef100_A9QMF1 RNA polymerase 2 (Fragment) n=1 Tax=Pelodera punctata
RepID=A9QMF1_9PELO
Length = 605
Score = 124 bits (312), Expect = 3e-27
Identities = 68/156 (43%), Positives = 93/156 (59%)
Frame = +3
Query: 9 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
N++RLIWNA++IF V S L+P K+V GV L + ++ ++
Sbjct: 168 NLQRLIWNAQKIFKVETRKASSLNPLKVVSGVRELSKKLIIVCGED-------------- 213
Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
+S+ AQ NATLL + +R++L SK + ++RL + F WLL EIE+
Sbjct: 214 -------------RISKQAQYNATLLMNILIRSTLCSKQMAEKYRLNEEGFEWLLGEIEH 260
Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
RF QA+A GEMVGA AAQS+GEPATQMTLNTFH+A
Sbjct: 261 RFNQAVAQPGEMVGALAAQSLGEPATQMTLNTFHFA 296
[132][TOP]
>UniRef100_A8PU11 DNA-directed RNA polymerase n=1 Tax=Brugia malayi RepID=A8PU11_BRUMA
Length = 1943
Score = 124 bits (312), Expect = 3e-27
Identities = 68/156 (43%), Positives = 96/156 (61%)
Frame = +3
Query: 9 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
N++R+IWNA++IF V +DL+P +++ GV+ L + V+ S ED
Sbjct: 1047 NLQRMIWNAQKIFRVELRKPTDLNPLRVIEGVKELSKKL-VIVSGED------------- 1092
Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
+S+ AQ NATLL + +R++L +K + +HRL + F WL+ EIE+
Sbjct: 1093 -------------RISKQAQYNATLLMNILLRSTLCAKRMAEKHRLNSEGFEWLIGEIES 1139
Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
RF+QA+ GEMVGA AAQS+GEPATQMTLNTFHYA
Sbjct: 1140 RFKQAIVQPGEMVGAIAAQSLGEPATQMTLNTFHYA 1175
[133][TOP]
>UniRef100_Q4P7Q0 DNA-directed RNA polymerase n=1 Tax=Ustilago maydis
RepID=Q4P7Q0_USTMA
Length = 1774
Score = 124 bits (312), Expect = 3e-27
Identities = 68/157 (43%), Positives = 99/157 (63%)
Frame = +3
Query: 6 VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLP 185
+N+ RL+ NA++IF V +DLSP++++ G+ +L R V+ D D I+RE
Sbjct: 970 MNVARLVLNAQQIFHVDPRKPTDLSPAEVIIGLRNVLDRLIVIRGD-----DPISRE--- 1021
Query: 186 PDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIE 365
AQ+NATLLF++H+R+ L SK+V+ +H + ++A+ W+L EIE
Sbjct: 1022 -------------------AQMNATLLFKIHLRSYLCSKMVIEQHHINKEAWEWILGEIE 1062
Query: 366 NRFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
+F +++A GEM G AAQSIGEPATQMTLNTFHYA
Sbjct: 1063 GQFARSVANPGEMCGTLAAQSIGEPATQMTLNTFHYA 1099
[134][TOP]
>UniRef100_UPI000186501C hypothetical protein BRAFLDRAFT_115025 n=1 Tax=Branchiostoma floridae
RepID=UPI000186501C
Length = 1956
Score = 124 bits (311), Expect = 3e-27
Identities = 69/156 (44%), Positives = 91/156 (58%)
Frame = +3
Query: 9 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
N+ R+IWNA++IF V +DL P K+V GV L + ++ D+ + A
Sbjct: 978 NLARIIWNAQKIFHVNTRAPTDLHPIKVVEGVRDLSKKLVIVKGDDPISIQA-------- 1029
Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
Q NAT+LF +R++L ++ VL E RL+ +AF WLL EIE+
Sbjct: 1030 -------------------QANATILFNTLLRSTLCTRRVLEEFRLSTEAFDWLLGEIES 1070
Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
RF QA+ GEMVGA AAQS+GEPATQMTLNTFHYA
Sbjct: 1071 RFNQAIVQPGEMVGALAAQSLGEPATQMTLNTFHYA 1106
[135][TOP]
>UniRef100_B7PJA3 DNA-directed RNA polymerase (Fragment) n=1 Tax=Ixodes scapularis
RepID=B7PJA3_IXOSC
Length = 1937
Score = 124 bits (310), Expect = 4e-27
Identities = 70/156 (44%), Positives = 94/156 (60%)
Frame = +3
Query: 9 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
N++R++WNA++IF V +DLSP ++V+GVE L+ + ++ ++
Sbjct: 982 NLQRMLWNAQKIFRVNLRSPTDLSPLRVVQGVEELVKKLVIVPGED-------------- 1027
Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
LS A NATLLF+ +RA+L SK V E RL+ ++F WLL EIE
Sbjct: 1028 -------------HLSIQANENATLLFRSLLRATLCSKRVAEEFRLSTESFEWLLGEIET 1074
Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
RF Q+ GEMVGA AAQS+GEPATQMTLNTFHYA
Sbjct: 1075 RFHQSQGQPGEMVGALAAQSLGEPATQMTLNTFHYA 1110
[136][TOP]
>UniRef100_A8N128 DNA-directed RNA polymerase n=1 Tax=Coprinopsis cinerea okayama7#130
RepID=A8N128_COPC7
Length = 1642
Score = 123 bits (308), Expect = 7e-27
Identities = 69/157 (43%), Positives = 95/157 (60%)
Frame = +3
Query: 6 VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLP 185
VN++RL+ NA +IF + + SDL P+ IV + L R ++ D+
Sbjct: 912 VNLQRLVQNASQIFHIDRRKPSDLDPAYIVDSIHELGKRLVIVRGDD------------- 958
Query: 186 PDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIE 365
LS+ AQ N+TLLF++H+RA+ A++ V+ + RLTR+AF W+L EIE
Sbjct: 959 --------------PLSKEAQDNSTLLFRMHLRATFAARKVIEQMRLTREAFEWILGEIE 1004
Query: 366 NRFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
+F Q++A GEM G AAQSIGEPATQMTLNTFHYA
Sbjct: 1005 TKFNQSIAHPGEMCGTLAAQSIGEPATQMTLNTFHYA 1041
[137][TOP]
>UniRef100_A9QMF9 DNA-directed RNA polymerase (Fragment) n=1 Tax=Rhabditis rainai
RepID=A9QMF9_9BILA
Length = 618
Score = 122 bits (307), Expect = 1e-26
Identities = 66/156 (42%), Positives = 95/156 (60%)
Frame = +3
Query: 9 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
N++RLIWN ++IF V + L+P K++ GV+ L + +++ D+
Sbjct: 182 NLQRLIWNXQKIFRVETRKPTSLNPLKVISGVQELSKKLIIVSGDDS------------- 228
Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
+S+ AQ NATLL + +R++L SK + S ++L +AF WLL E+E
Sbjct: 229 --------------ISKQAQYNATLLMNILLRSTLCSKRMASMYKLNSEAFEWLLGEVET 274
Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
RF+QA+A GEMVGA AAQS+GEPATQMTLNTFH+A
Sbjct: 275 RFKQAIAQPGEMVGALAAQSLGEPATQMTLNTFHFA 310
[138][TOP]
>UniRef100_A9QME7 DNA-directed RNA polymerase (Fragment) n=1 Tax=Pellioditis
mediterranea RepID=A9QME7_9PELO
Length = 618
Score = 122 bits (307), Expect = 1e-26
Identities = 65/156 (41%), Positives = 93/156 (59%)
Frame = +3
Query: 9 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
N++RLIWNA++IF V +DLSP +++ GV + + ++ ++
Sbjct: 188 NLQRLIWNAQKIFHVETRKPTDLSPLRVIEGVRDMSEKLIIVAGED-------------- 233
Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
+S+ AQ NATLL + +R++L SK + ++L +AF WLL E+E
Sbjct: 234 -------------RISKQAQYNATLLMNILLRSTLCSKKMAVSYKLNSEAFEWLLGEVET 280
Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
RF+QA+A GEMVG AAQS+GEPATQMTLNTFHYA
Sbjct: 281 RFKQAIAQPGEMVGPLAAQSLGEPATQMTLNTFHYA 316
[139][TOP]
>UniRef100_A8Q5I6 DNA-directed RNA polymerase n=1 Tax=Malassezia globosa CBS 7966
RepID=A8Q5I6_MALGO
Length = 1607
Score = 122 bits (307), Expect = 1e-26
Identities = 69/157 (43%), Positives = 95/157 (60%)
Frame = +3
Query: 6 VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLP 185
+NI RL+ NA++IF + SDLSP +IV G++ +L+ V+ D+
Sbjct: 763 LNIARLVLNAQQIFHIDPRKPSDLSPFEIVDGLKRVLNNLLVVRGDD------------- 809
Query: 186 PDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIE 365
++S Q NATLLF++H+R+ L SK V+ H LTR+A+ W+L EIE
Sbjct: 810 --------------KISRVMQENATLLFKIHLRSFLCSKQVIEVHHLTREAWEWVLGEIE 855
Query: 366 NRFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
+F +++A GEM G AAQSIGEPATQMTLNTFHYA
Sbjct: 856 GQFARSVAQPGEMCGTLAAQSIGEPATQMTLNTFHYA 892
[140][TOP]
>UniRef100_P16356 DNA-directed RNA polymerase II subunit RPB1 n=1 Tax=Caenorhabditis
elegans RepID=RPB1_CAEEL
Length = 1852
Score = 122 bits (307), Expect = 1e-26
Identities = 68/156 (43%), Positives = 96/156 (61%)
Frame = +3
Query: 9 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
N++RLIWNA++IF V +LSP ++ GV L + +++ ++
Sbjct: 972 NLQRLIWNAQKIFKVDLRKPVNLSPLHVISGVRELSKKLIIVSGND-------------- 1017
Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
E+S+ AQ NATLL + +R++L +K + ++ +L +AF WLL EIE+
Sbjct: 1018 -------------EISKQAQYNATLLMNILLRSTLCTKNMCTKSKLNSEAFDWLLGEIES 1064
Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
RFQQA+A GEMVGA AAQS+GEPATQMTLNTFHYA
Sbjct: 1065 RFQQAIAQPGEMVGALAAQSLGEPATQMTLNTFHYA 1100
[141][TOP]
>UniRef100_Q1L5Y7 DNA-directed RNA polymerase (Fragment) n=1 Tax=Antirrhinum majus
RepID=Q1L5Y7_ANTMA
Length = 780
Score = 122 bits (306), Expect = 1e-26
Identities = 72/154 (46%), Positives = 92/154 (59%)
Frame = +3
Query: 6 VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLP 185
VNI RL+ NA++ F V SD+ P +IV V+ L R +V+ D+
Sbjct: 654 VNIRRLVLNAQKTFKVDFRRPSDMHPMEIVEAVDKLQERLKVVVGDD------------- 700
Query: 186 PDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIE 365
LS AQ NATL F + +R++LASK VL E+RLTR+AF W++ EIE
Sbjct: 701 --------------YLSMEAQKNATLFFNILLRSALASKRVLKEYRLTREAFEWVIGEIE 746
Query: 366 NRFQQALAPAGEMVGATAAQSIGEPATQMTLNTF 467
+RF Q+L AGEM+G AAQSIGEPATQMTLNTF
Sbjct: 747 SRFLQSLVAAGEMIGCVAAQSIGEPATQMTLNTF 780
[142][TOP]
>UniRef100_Q6E233 RNA polymerase 2 (Fragment) n=1 Tax=Caenorhabditis remanei
RepID=Q6E233_CAERE
Length = 611
Score = 122 bits (306), Expect = 1e-26
Identities = 67/156 (42%), Positives = 95/156 (60%)
Frame = +3
Query: 9 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
N++RLIWNA++IF V +LSP ++ GV L + +++ ++
Sbjct: 174 NLQRLIWNAQKIFKVDLRKPVNLSPLHVINGVRELSKKLIIVSGND-------------- 219
Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
E+S+ AQ NATLL + +R++L +K + + +L +AF WLL E+E+
Sbjct: 220 -------------EISKQAQYNATLLMNILLRSTLCTKKMCTSAKLNTEAFDWLLGEVES 266
Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
RFQQA+A GEMVGA AAQS+GEPATQMTLNTFHYA
Sbjct: 267 RFQQAIAQPGEMVGALAAQSLGEPATQMTLNTFHYA 302
[143][TOP]
>UniRef100_Q6E231 RNA polymerase 2 (Fragment) n=1 Tax=Caenorhabditis brenneri
RepID=Q6E231_CAEBE
Length = 596
Score = 122 bits (306), Expect = 1e-26
Identities = 68/156 (43%), Positives = 94/156 (60%)
Frame = +3
Query: 9 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
N++RLIWNA++IF V +LSP ++ GV L + +++ ++
Sbjct: 166 NLQRLIWNAQKIFKVDLRKPVNLSPLHVINGVRELSKKLIIVSGND-------------- 211
Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
E+S+ AQ NATLL + +R++L +K + + +L +AF WLL EIE
Sbjct: 212 -------------EISKQAQYNATLLMNILLRSTLCTKKMCTSAKLNTEAFDWLLGEIET 258
Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
RFQQA+A GEMVGA AAQS+GEPATQMTLNTFHYA
Sbjct: 259 RFQQAIAQPGEMVGALAAQSLGEPATQMTLNTFHYA 294
[144][TOP]
>UniRef100_Q6E226 DNA-directed RNA polymerase (Fragment) n=1 Tax=Caenorhabditis
plicata RepID=Q6E226_9PELO
Length = 636
Score = 122 bits (306), Expect = 1e-26
Identities = 67/156 (42%), Positives = 93/156 (59%)
Frame = +3
Query: 9 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
N++RLIWNA++IF V DLSP ++ GV + + +++ ++D
Sbjct: 191 NLQRLIWNAQKIFKVDTRKPVDLSPLHVIDGVREISSKLIIVSGNDD------------- 237
Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
+S AQ NATLL + +R++L SK + + +L +AF WLL E+E+
Sbjct: 238 --------------ISRQAQYNATLLMNILLRSTLCSKKLCTTSKLNTEAFDWLLGEVES 283
Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
RF QA+A GEMVGA AAQS+GEPATQMTLNTFHYA
Sbjct: 284 RFNQAIAQPGEMVGALAAQSLGEPATQMTLNTFHYA 319
[145][TOP]
>UniRef100_A9QMP7 RNA polymerase 2 (Fragment) n=1 Tax=Rhabditoides inermis
RepID=A9QMP7_9BILA
Length = 440
Score = 122 bits (306), Expect = 1e-26
Identities = 67/156 (42%), Positives = 92/156 (58%)
Frame = +3
Query: 9 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
N++RLIWNA++IF V +DL P +++ GV + + ++ ED
Sbjct: 146 NLQRLIWNAQKIFHVETRKPTDLHPLRVIEGVRDMAKKL-IIVGGED------------- 191
Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
+S+ AQ NATLL + VR++L SK + ++L +AF WLL E+E
Sbjct: 192 -------------RISKQAQYNATLLMNILVRSTLCSKKMAEHYKLNSEAFEWLLGEVET 238
Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
RFQQA+A GEMVG AAQS+GEPATQMTLNTFH+A
Sbjct: 239 RFQQAIAQPGEMVGPLAAQSLGEPATQMTLNTFHFA 274
[146][TOP]
>UniRef100_A9QMF5 DNA-directed RNA polymerase (Fragment) n=1 Tax=Rhabditoides inermis
RepID=A9QMF5_9BILA
Length = 630
Score = 122 bits (306), Expect = 1e-26
Identities = 67/156 (42%), Positives = 92/156 (58%)
Frame = +3
Query: 9 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
N++RLIWNA++IF V +DL P +++ GV + + ++ ED
Sbjct: 183 NLQRLIWNAQKIFHVETRKPTDLHPLRVIEGVRDMAKKL-IIVGGED------------- 228
Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
+S+ AQ NATLL + VR++L SK + ++L +AF WLL E+E
Sbjct: 229 -------------RISKQAQYNATLLMNILVRSTLCSKKMAEHYKLNSEAFEWLLGEVET 275
Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
RFQQA+A GEMVG AAQS+GEPATQMTLNTFH+A
Sbjct: 276 RFQQAIAQPGEMVGPLAAQSLGEPATQMTLNTFHFA 311
[147][TOP]
>UniRef100_A9QMF3 DNA-directed RNA polymerase (Fragment) n=1 Tax=Rhabditoides regina
RepID=A9QMF3_9BILA
Length = 626
Score = 122 bits (306), Expect = 1e-26
Identities = 65/156 (41%), Positives = 93/156 (59%)
Frame = +3
Query: 9 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
N++RLIWNA++IF V + L+P +++ GV + + +++ D+
Sbjct: 187 NLQRLIWNAQKIFKVETRKVTALNPLRVIEGVRNVSKKLVIVSGDD-------------- 232
Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
+S+ AQ NATLL + +R++L SK + +H+L + F WLL EIE
Sbjct: 233 -------------RISKQAQYNATLLMNILIRSTLCSKQMAEKHKLNEEGFEWLLGEIET 279
Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
RFQ A+A GEMVGA AAQS+GEPATQMTLNTFH+A
Sbjct: 280 RFQLAIAQPGEMVGALAAQSLGEPATQMTLNTFHFA 315
[148][TOP]
>UniRef100_P35074 DNA-directed RNA polymerase II subunit RPB1 n=1 Tax=Caenorhabditis
briggsae RepID=RPB1_CAEBR
Length = 1853
Score = 122 bits (306), Expect = 1e-26
Identities = 68/156 (43%), Positives = 94/156 (60%)
Frame = +3
Query: 9 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
N++RLIWNA++IF V +LSP ++ GV L + +++ ++
Sbjct: 976 NLQRLIWNAQKIFKVDLRKPVNLSPLHVINGVRELSKKLIIVSGND-------------- 1021
Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
E+S+ AQ NATLL + +R++L +K + + +L +AF WLL EIE
Sbjct: 1022 -------------EISKQAQYNATLLMNILLRSTLCTKKMCTSAKLNTEAFDWLLGEIET 1068
Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
RFQQA+A GEMVGA AAQS+GEPATQMTLNTFHYA
Sbjct: 1069 RFQQAIAQPGEMVGALAAQSLGEPATQMTLNTFHYA 1104
[149][TOP]
>UniRef100_B0DB45 DNA-directed RNA polymerase n=1 Tax=Laccaria bicolor S238N-H82
RepID=B0DB45_LACBS
Length = 1742
Score = 122 bits (305), Expect = 2e-26
Identities = 70/157 (44%), Positives = 91/157 (57%)
Frame = +3
Query: 6 VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLP 185
VN+ R++ NA +IF + + SDL P IV GV L R V+ D+
Sbjct: 965 VNLHRIVQNAIQIFHIDRRKPSDLEPGYIVDGVNELCGRLVVVRGDD------------- 1011
Query: 186 PDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIE 365
LS AQLNATL F++H+RA+ AS+ VL + LTR+AF W++ E+E
Sbjct: 1012 --------------PLSREAQLNATLTFRMHLRATFASRRVLEKFHLTREAFDWVMGEVE 1057
Query: 366 NRFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
+F Q++ GEM G AAQSIGEPATQMTLNTFHYA
Sbjct: 1058 TKFNQSVVHPGEMCGTLAAQSIGEPATQMTLNTFHYA 1094
[150][TOP]
>UniRef100_A9QMG6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Teratorhabditis
palmarum RepID=A9QMG6_9BILA
Length = 633
Score = 121 bits (304), Expect = 2e-26
Identities = 68/156 (43%), Positives = 93/156 (59%)
Frame = +3
Query: 9 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
N++RLIWNA++IF + +DLSP +++ G+ L + V+ S ED
Sbjct: 191 NLQRLIWNAQKIFKIETRKVTDLSPVRVIEGIRELSKKL-VIVSGED------------- 236
Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
+S+ AQ NATLL + +R++L SK V S H+L +AF WLL EIE+
Sbjct: 237 -------------RISKQAQYNATLLMNILIRSTLCSKRVASMHKLNNEAFDWLLGEIEH 283
Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
RF+QA+A GA AAQS+GEPATQMTLNTFH+A
Sbjct: 284 RFKQAIAXXXXXXGALAAQSLGEPATQMTLNTFHFA 319
[151][TOP]
>UniRef100_Q6E227 RNA polymerase 2 (Fragment) n=1 Tax=Caenorhabditis japonica
RepID=Q6E227_CAEJA
Length = 608
Score = 121 bits (303), Expect = 3e-26
Identities = 68/156 (43%), Positives = 93/156 (59%)
Frame = +3
Query: 9 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
N++RLIWNA++IF V +LSP ++ GV L + ++ ++
Sbjct: 174 NLQRLIWNAQKIFKVDLRKPVNLSPLHVINGVRELSKKLIIVCGND-------------- 219
Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
E+S+ AQ NATLL + +R++L +K + + +L +AF WLL EIE
Sbjct: 220 -------------EISKQAQYNATLLMNILLRSTLCTKKMCTTAKLNTEAFDWLLGEIET 266
Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
RFQQA+A GEMVGA AAQS+GEPATQMTLNTFHYA
Sbjct: 267 RFQQAIAQPGEMVGALAAQSLGEPATQMTLNTFHYA 302
[152][TOP]
>UniRef100_A7S8F9 DNA-directed RNA polymerase n=1 Tax=Nematostella vectensis
RepID=A7S8F9_NEMVE
Length = 1929
Score = 121 bits (303), Expect = 3e-26
Identities = 69/157 (43%), Positives = 90/157 (57%)
Frame = +3
Query: 6 VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLP 185
VN+ RLIWNA++ F + SDL P +++ GV L + V+ + ED
Sbjct: 977 VNLSRLIWNAQKTFHITNRSASDLHPLRVIEGVRELSKKL-VIVAGED------------ 1023
Query: 186 PDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIE 365
+S+ AQ NATLLF + +R++L +K V E L+ +AF WLL EIE
Sbjct: 1024 --------------HISKQAQFNATLLFNILLRSTLCTKRVAEEFHLSSEAFEWLLGEIE 1069
Query: 366 NRFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
RF + GEMVGA AAQS+GEPATQMTLNTFHYA
Sbjct: 1070 TRFNHSHVKPGEMVGALAAQSLGEPATQMTLNTFHYA 1106
[153][TOP]
>UniRef100_Q6E225 DNA-directed RNA polymerase (Fragment) n=1 Tax=Caenorhabditis sp.
SB341 RepID=Q6E225_9PELO
Length = 622
Score = 120 bits (301), Expect = 5e-26
Identities = 65/156 (41%), Positives = 94/156 (60%)
Frame = +3
Query: 9 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
N++RLIWNA++IF V ++LSP ++ GV + + +++ +D
Sbjct: 191 NLQRLIWNAQKIFKVDLRKPTNLSPLHVIEGVREVSKKLIIVSGSDD------------- 237
Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
+S+ AQ NATLL + +R++L SK + + +L +AF WLL E+E+
Sbjct: 238 --------------ISKQAQYNATLLMNILLRSTLCSKKMATSAKLNTEAFDWLLGEVES 283
Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
RF Q++A GEMVGA AAQS+GEPATQMTLNTFHYA
Sbjct: 284 RFMQSIAQPGEMVGALAAQSLGEPATQMTLNTFHYA 319
[154][TOP]
>UniRef100_Q25151 DNA-directed RNA polymerase (Fragment) n=1 Tax=Helobdella stagnalis
RepID=Q25151_9ANNE
Length = 1337
Score = 120 bits (301), Expect = 5e-26
Identities = 68/156 (43%), Positives = 91/156 (58%)
Frame = +3
Query: 9 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
N++RLIWNA++IF + S+L P KI+ V L + ++ ++
Sbjct: 889 NLQRLIWNAQKIFRIHTRKPSNLHPVKIIEDVRELSKKFMIVKGED-------------- 934
Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
LS+TA NATLL + VR++L SK V+ E L+ +AF WL+ EIE+
Sbjct: 935 -------------RLSKTANTNATLLMNILVRSTLCSKRVIEEFHLSTEAFEWLMGEIES 981
Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
+F QA GEMVGA AAQS+GEPATQMTLNTFHYA
Sbjct: 982 KFIQARVQPGEMVGALAAQSLGEPATQMTLNTFHYA 1017
[155][TOP]
>UniRef100_A9QMQ9 DNA-directed RNA polymerase (Fragment) n=1 Tax=Caenorhabditis sp.
JU727 RepID=A9QMQ9_9PELO
Length = 620
Score = 120 bits (301), Expect = 5e-26
Identities = 67/156 (42%), Positives = 93/156 (59%)
Frame = +3
Query: 9 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
N++RLIWNA++IF V +LSP ++ GV L + +++ ++
Sbjct: 191 NLQRLIWNAQKIFKVDLRKPVNLSPLHVINGVRELSKKLIIVSGND-------------- 236
Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
E+S+ AQ NATLL + +R++L +K + + +L +AF WLL EIE
Sbjct: 237 -------------EISKQAQYNATLLMNILLRSTLCTKKMCTSAKLNTEAFDWLLGEIET 283
Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
RFQ A+A GEMVGA AAQS+GEPATQMTLNTFHYA
Sbjct: 284 RFQSAIAQPGEMVGALAAQSLGEPATQMTLNTFHYA 319
[156][TOP]
>UniRef100_UPI000187E3DF hypothetical protein MPER_04443 n=1 Tax=Moniliophthora perniciosa
FA553 RepID=UPI000187E3DF
Length = 343
Score = 120 bits (300), Expect = 6e-26
Identities = 69/157 (43%), Positives = 92/157 (58%)
Frame = +3
Query: 6 VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLP 185
VN+ R++ NA +IF + + SDL P+ IV V+ L R V+ ++D
Sbjct: 166 VNLSRIVQNAVQIFHIDRRKPSDLEPAYIVDAVKALCERLIVVRGNDD------------ 213
Query: 186 PDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIE 365
LS AQ NATL F++H+RA+ AS+ VL + L R+AF W+L E+E
Sbjct: 214 ---------------LSREAQDNATLRFRMHLRATFASRRVLEKFHLNREAFEWVLGEVE 258
Query: 366 NRFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
++F Q+L GEM G AAQSIGEPATQMTLNTFHYA
Sbjct: 259 SKFNQSLVNPGEMCGTLAAQSIGEPATQMTLNTFHYA 295
[157][TOP]
>UniRef100_UPI0000E48673 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
(RPB1) isoform 1 n=1 Tax=Strongylocentrotus purpuratus
RepID=UPI0000E48673
Length = 1880
Score = 119 bits (299), Expect = 8e-26
Identities = 70/156 (44%), Positives = 93/156 (59%)
Frame = +3
Query: 9 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
N++R+IWNA++IF + S+L PS ++ GV L + V+ EDA
Sbjct: 976 NLDRMIWNAQQIFHINTRLPSELHPSFVLEGVRDLKKKL-VIVKGEDA------------ 1022
Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
+S AQ NAT L +R++L+S V EH+L+ ++F WLL EIE
Sbjct: 1023 --------------ISRQAQENATYLMNCLIRSTLSSTRVAQEHKLSPESFEWLLGEIET 1068
Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
RF Q+LA AGEMVGA AAQS+GEPATQMTLNTFH+A
Sbjct: 1069 RFNQSLAMAGEMVGALAAQSLGEPATQMTLNTFHFA 1104
[158][TOP]
>UniRef100_UPI0000E48672 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
(RPB1) isoform 2 n=1 Tax=Strongylocentrotus purpuratus
RepID=UPI0000E48672
Length = 1913
Score = 119 bits (299), Expect = 8e-26
Identities = 70/156 (44%), Positives = 93/156 (59%)
Frame = +3
Query: 9 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
N++R+IWNA++IF + S+L PS ++ GV L + V+ EDA
Sbjct: 982 NLDRMIWNAQQIFHINTRLPSELHPSFVLEGVRDLKKKL-VIVKGEDA------------ 1028
Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
+S AQ NAT L +R++L+S V EH+L+ ++F WLL EIE
Sbjct: 1029 --------------ISRQAQENATYLMNCLIRSTLSSTRVAQEHKLSPESFEWLLGEIET 1074
Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
RF Q+LA AGEMVGA AAQS+GEPATQMTLNTFH+A
Sbjct: 1075 RFNQSLAMAGEMVGALAAQSLGEPATQMTLNTFHFA 1110
[159][TOP]
>UniRef100_UPI0000E48671 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
(RPB1) isoform 3 n=1 Tax=Strongylocentrotus purpuratus
RepID=UPI0000E48671
Length = 1921
Score = 119 bits (299), Expect = 8e-26
Identities = 70/156 (44%), Positives = 93/156 (59%)
Frame = +3
Query: 9 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
N++R+IWNA++IF + S+L PS ++ GV L + V+ EDA
Sbjct: 982 NLDRMIWNAQQIFHINTRLPSELHPSFVLEGVRDLKKKL-VIVKGEDA------------ 1028
Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
+S AQ NAT L +R++L+S V EH+L+ ++F WLL EIE
Sbjct: 1029 --------------ISRQAQENATYLMNCLIRSTLSSTRVAQEHKLSPESFEWLLGEIET 1074
Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
RF Q+LA AGEMVGA AAQS+GEPATQMTLNTFH+A
Sbjct: 1075 RFNQSLAMAGEMVGALAAQSLGEPATQMTLNTFHFA 1110
[160][TOP]
>UniRef100_Q6E232 RNA polymersae 2 (Fragment) n=1 Tax=Caenorhabditis sp. PS1010
RepID=Q6E232_9PELO
Length = 601
Score = 119 bits (298), Expect = 1e-25
Identities = 66/156 (42%), Positives = 93/156 (59%)
Frame = +3
Query: 9 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
N++RL+WNA++IF V +LSP ++ GV L + ++ ++D
Sbjct: 174 NLQRLMWNAQKIFKVDTRKPVNLSPLHVIDGVRELSKKLIIVCGNDD------------- 220
Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
+S+ AQ NATLL + +R++L +K + + +L +AF WLL EIE+
Sbjct: 221 --------------ISKQAQYNATLLMNILLRSTLCTKKMCTSSKLNTEAFDWLLGEIES 266
Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
RF QA+A GEMVGA AAQS+GEPATQMTLNTFHYA
Sbjct: 267 RFMQAIAQPGEMVGALAAQSLGEPATQMTLNTFHYA 302
[161][TOP]
>UniRef100_O01376 DNA-directed RNA polymerase (Fragment) n=1 Tax=unidentified
nematode RepID=O01376_9BILA
Length = 633
Score = 119 bits (298), Expect = 1e-25
Identities = 66/156 (42%), Positives = 93/156 (59%)
Frame = +3
Query: 9 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
N++RL+WNA++IF V +LSP ++ GV L + ++ ++D
Sbjct: 187 NLQRLMWNAQKIFKVDTRKPVNLSPLHVIDGVRELSKKLIIVCGNDD------------- 233
Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
+S+ AQ NATLL + +R++L +K + + +L +AF WLL EIE+
Sbjct: 234 --------------ISKQAQYNATLLMNILLRSALCTKKMCTSSKLNTEAFDWLLGEIES 279
Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
RF QA+A GEMVGA AAQS+GEPATQMTLNTFHYA
Sbjct: 280 RFMQAIAQPGEMVGALAAQSLGEPATQMTLNTFHYA 315
[162][TOP]
>UniRef100_A8BDP3 RNA polymerase II largest subunit (Fragment) n=1 Tax=Priapulus
caudatus RepID=A8BDP3_PRICU
Length = 434
Score = 119 bits (298), Expect = 1e-25
Identities = 65/156 (41%), Positives = 91/156 (58%)
Frame = +3
Query: 9 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
N++R+IWNA++IF + SDL P +++ GV L + ++ ++
Sbjct: 122 NLQRMIWNAQKIFHINTRSPSDLHPLRVIEGVRDLSKKLIIVEGED-------------- 167
Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
LS+ AQ NATL +R++L +K V E++LT ++F WLL E+E+
Sbjct: 168 -------------RLSKQAQENATLNINAMLRSTLCTKRVAEEYKLTTESFEWLLGEVES 214
Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
RFQ A A GEMVG AAQS+GEPATQMTLNTFHYA
Sbjct: 215 RFQHAQAQPGEMVGPLAAQSLGEPATQMTLNTFHYA 250
[163][TOP]
>UniRef100_Q30BD8 DNA-directed RNA polymerase (Fragment) n=1 Tax=Cyanophora paradoxa
RepID=Q30BD8_CYAPA
Length = 1000
Score = 119 bits (297), Expect = 1e-25
Identities = 71/149 (47%), Positives = 91/149 (61%)
Frame = +3
Query: 6 VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLP 185
VN++RLIWNA++I+ V + SDL P I++GVELL + V+ ++
Sbjct: 879 VNLKRLIWNAQKIYKVDTSKPSDLRPDIILQGVELLSTQLVVIAGEDT------------ 926
Query: 186 PDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIE 365
LS AQ NAT LF +H+RA+LA+K VLSE+RL+ A WLL IE
Sbjct: 927 ---------------LSREAQENATRLFNIHLRATLATKRVLSEYRLSAAALEWLLGVIE 971
Query: 366 NRFQQALAPAGEMVGATAAQSIGEPATQM 452
+RF QA+A GEMVGA AAQSIGEPATQM
Sbjct: 972 SRFNQAIAHPGEMVGAIAAQSIGEPATQM 1000
[164][TOP]
>UniRef100_Q6JU03 RNA polymerase II largest subunit (Fragment) n=1 Tax=Podura
aquatica RepID=Q6JU03_9HEXA
Length = 306
Score = 119 bits (297), Expect = 1e-25
Identities = 69/145 (47%), Positives = 86/145 (59%)
Frame = +3
Query: 42 IFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEA 221
IF + + +DLSP ++V GVE LL + V+ D+
Sbjct: 1 IFHINKRTYTDLSPFRVVEGVEDLLKKCIVVNGDD------------------------- 35
Query: 222 LKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGE 401
+S+ A NATLLFQ VR++L S+ V E RLT +AF WL+ EIE RFQQAL GE
Sbjct: 36 --PMSQKANANATLLFQCLVRSTLCSRRVAEEFRLTTEAFEWLIGEIETRFQQALVQPGE 93
Query: 402 MVGATAAQSIGEPATQMTLNTFHYA 476
MVGA AAQS+GEPATQMTLNTFH+A
Sbjct: 94 MVGALAAQSLGEPATQMTLNTFHFA 118
[165][TOP]
>UniRef100_Q6JTX1 RNA polymerase II largest subunit (Fragment) n=1 Tax=Isohypsibius
elegans RepID=Q6JTX1_9BILA
Length = 304
Score = 119 bits (297), Expect = 1e-25
Identities = 65/156 (41%), Positives = 92/156 (58%)
Frame = +3
Query: 9 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
N++R++WNA++IF ++ +DL P ++V G+ L+ + V+ ED
Sbjct: 113 NLQRMVWNAQKIFHIKGRGTTDLHPVRVVEGLNELMKKL-VIVKGED------------- 158
Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
LS AQ NAT+L +R++L SK + E+ L +AF WLL EIE+
Sbjct: 159 -------------RLSREAQENATILMNTMLRSTLCSKRMAEEYHLNTEAFEWLLGEIES 205
Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
RF Q++ GEMVGA AAQS+GEPATQMTLNTFH+A
Sbjct: 206 RFAQSMVQPGEMVGALAAQSLGEPATQMTLNTFHFA 241
[166][TOP]
>UniRef100_A9QMF8 DNA-directed RNA polymerase (Fragment) n=1 Tax=Rhabditis sp. SB347
RepID=A9QMF8_9BILA
Length = 621
Score = 119 bits (297), Expect = 1e-25
Identities = 66/156 (42%), Positives = 92/156 (58%)
Frame = +3
Query: 9 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
N++RLIWNA++IF V +DL+P +++ GV L + ++ S ED
Sbjct: 191 NLQRLIWNAQKIFHVETRKPTDLNPIRVIEGVRELSSKL-IIVSGED------------- 236
Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
+S+ AQ NATLL + +R++L SK + S ++L +AF WLL E+E
Sbjct: 237 -------------RISKQAQYNATLLMNILIRSTLCSKKMASTYKLNSEAFEWLLGEVET 283
Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
RF+QA+A GA AAQS+GEPATQMTLNTFHYA
Sbjct: 284 RFKQAIAXXXXXXGALAAQSLGEPATQMTLNTFHYA 319
[167][TOP]
>UniRef100_Q6E223 RNA polymerase 2 (Fragment) n=1 Tax=Caenorhabditis sp. DF5070
RepID=Q6E223_9PELO
Length = 606
Score = 118 bits (296), Expect = 2e-25
Identities = 65/156 (41%), Positives = 92/156 (58%)
Frame = +3
Query: 9 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
N++RL+WNA++IF V +LSP ++ GV L + ++ +D
Sbjct: 174 NLQRLMWNAQKIFKVDMRKPVNLSPLHVIDGVRELSKKLVIVGGSDD------------- 220
Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
+S+ AQ NATLL + +R++L +K + + +L +AF WLL E+E+
Sbjct: 221 --------------ISKQAQYNATLLMNILLRSTLCTKKLCTSSKLNTEAFDWLLGEVES 266
Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
RF QA+A GEMVGA AAQS+GEPATQMTLNTFHYA
Sbjct: 267 RFMQAIAQPGEMVGALAAQSLGEPATQMTLNTFHYA 302
[168][TOP]
>UniRef100_O04144 DNA-directed RNA polymerase (Fragment) n=1 Tax=Spirogyra sp.
RepID=O04144_9VIRI
Length = 613
Score = 117 bits (294), Expect = 3e-25
Identities = 68/154 (44%), Positives = 92/154 (59%)
Frame = +3
Query: 6 VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLP 185
VNI+RLIWNA++IF + SD++P +V G++ L R +V+ D D I+RE
Sbjct: 487 VNIKRLIWNAQKIFKIDLRKPSDMNPMDVVDGMDKLQERLKVVVGD-----DHISRE--- 538
Query: 186 PDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIE 365
AQ NATL F +R++++SK VL ++RL +AF W++ EIE
Sbjct: 539 -------------------AQKNATLFFNCLLRSTMSSKQVLKDYRLNMEAFQWVIGEIE 579
Query: 366 NRFQQALAPAGEMVGATAAQSIGEPATQMTLNTF 467
RF Q+ GEM+G AAQSIGEPATQMTLNTF
Sbjct: 580 ARFLQSQVAPGEMIGCVAAQSIGEPATQMTLNTF 613
[169][TOP]
>UniRef100_Q6CBQ3 DNA-directed RNA polymerase n=1 Tax=Yarrowia lipolytica
RepID=Q6CBQ3_YARLI
Length = 1750
Score = 117 bits (294), Expect = 3e-25
Identities = 68/157 (43%), Positives = 93/157 (59%)
Frame = +3
Query: 6 VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLP 185
VNI R++ N++RIF+V ++ SDL+ +IV GV+ L R ++ D
Sbjct: 962 VNIRRVVQNSQRIFNVDKSKVSDLTIPEIVEGVQSLCKRLTIVRGDSS------------ 1009
Query: 186 PDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIE 365
L++ AQ NAT+LFQ VR+ +K V+ E+RL R AF W++ EIE
Sbjct: 1010 ---------------LAKEAQENATMLFQCLVRSRFPTKRVIEEYRLNRAAFEWVMGEIE 1054
Query: 366 NRFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
+F +++ GEMVG AAQSIGEPATQMTLNTFHYA
Sbjct: 1055 TQFAKSVVHPGEMVGVIAAQSIGEPATQMTLNTFHYA 1091
[170][TOP]
>UniRef100_P36594 DNA-directed RNA polymerase II subunit rpb1 n=1
Tax=Schizosaccharomyces pombe RepID=RPB1_SCHPO
Length = 1752
Score = 117 bits (294), Expect = 3e-25
Identities = 68/157 (43%), Positives = 91/157 (57%)
Frame = +3
Query: 6 VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLP 185
VN++R+I NA +IF + +DL PS I+ G+ L+ + + D I R++
Sbjct: 961 VNVQRIIQNALQIFHLEAKKPTDLLPSDIINGLNELIAKLTIFRGS-----DRITRDV-- 1013
Query: 186 PDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIE 365
Q NATLLFQ+ +R+ A K V+ E+RL + AF W++ E+E
Sbjct: 1014 --------------------QNNATLLFQILLRSKFAVKRVIMEYRLNKVAFEWIMGEVE 1053
Query: 366 NRFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
RFQQA+ GEMVG AAQSIGEPATQMTLNTFHYA
Sbjct: 1054 ARFQQAVVSPGEMVGTLAAQSIGEPATQMTLNTFHYA 1090
[171][TOP]
>UniRef100_B6JYP8 DNA-directed RNA polymerase n=1 Tax=Schizosaccharomyces japonicus
yFS275 RepID=B6JYP8_SCHJY
Length = 1748
Score = 117 bits (292), Expect = 5e-25
Identities = 70/157 (44%), Positives = 89/157 (56%)
Frame = +3
Query: 6 VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLP 185
VN+ R+I N+ +IF + +DL PS I+ GV L+ + V D
Sbjct: 961 VNVHRIIQNSVQIFHLDSKKPTDLLPSDIIYGVRNLISKLSVFRGD-------------- 1006
Query: 186 PDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIE 365
D KE+ E NATLLFQ+ +R+ LA+K V+ E+ L + AF W++ EIE
Sbjct: 1007 ---------DRITKEIQE----NATLLFQILLRSKLATKRVVMEYHLNKIAFEWIIGEIE 1053
Query: 366 NRFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
RFQQ GEMVG AAQSIGEPATQMTLNTFHYA
Sbjct: 1054 ARFQQCQVNPGEMVGTLAAQSIGEPATQMTLNTFHYA 1090
[172][TOP]
>UniRef100_A9QMH0 DNA-directed RNA polymerase (Fragment) n=1 Tax=Panagrellus
redivivus RepID=A9QMH0_PANRE
Length = 636
Score = 116 bits (291), Expect = 7e-25
Identities = 64/156 (41%), Positives = 92/156 (58%)
Frame = +3
Query: 9 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
N++RLIWNA++IF V ++L P+ I+ GV L R +++ +
Sbjct: 192 NLQRLIWNAQKIFHVDLRKPTELHPATIIEGVRKLGDRLVIVSGTD-------------- 237
Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
++S AQ NATLL + +R++ A+K V ++LT +AF W++ EIE+
Sbjct: 238 -------------KISRQAQENATLLMNILLRSTFATKQVAEVYKLTNEAFEWIIGEIES 284
Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
RF QA+ GEMVG AAQS+GEPATQMTLNTFH+A
Sbjct: 285 RFNQAIVQPGEMVGPLAAQSLGEPATQMTLNTFHFA 320
[173][TOP]
>UniRef100_A8BDP1 RNA polymerase II largest subunit (Fragment) n=1 Tax=Paragordius
varius RepID=A8BDP1_PARVA
Length = 467
Score = 116 bits (291), Expect = 7e-25
Identities = 64/156 (41%), Positives = 92/156 (58%)
Frame = +3
Query: 9 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
N++R+IWNA++IF + SDL P K+VRGV+ L + V+
Sbjct: 122 NLQRIIWNAQKIFRINPRLPSDLHPLKVVRGVQELSEKLIVV------------------ 163
Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
+ + +S+ AQL+AT L +R++L ++ V E +L+ AF W+L EIE+
Sbjct: 164 ---------KGVDRISQRAQLDATFLMNALIRSTLCTRRVAEEFKLSSDAFDWVLGEIES 214
Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
RF+ +L GEMVG +AQS+GEPATQMTLNTFHYA
Sbjct: 215 RFRSSLVDPGEMVGPLSAQSLGEPATQMTLNTFHYA 250
[174][TOP]
>UniRef100_C7YI77 Predicted protein n=1 Tax=Nectria haematococca mpVI 77-13-4
RepID=C7YI77_NECH7
Length = 1750
Score = 116 bits (291), Expect = 7e-25
Identities = 66/157 (42%), Positives = 94/157 (59%)
Frame = +3
Query: 6 VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLP 185
+NI R+I +AKR+F+V+ NDRS+L PS ++ V+ LL +++ + V+A A
Sbjct: 971 LNITRIIESAKRVFNVKANDRSNLRPSDVIPSVQNLLDHMKIVRGTDPISVEADA----- 1025
Query: 186 PDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIE 365
NAT+LF+ +R+ LA K V+ EHRL + AF ++ E++
Sbjct: 1026 ----------------------NATILFKGLLRSRLAFKEVVKEHRLNKLAFDHVIGELQ 1063
Query: 366 NRFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
NR+ +A GEMVG AAQSIGEPATQMTLNTFH+A
Sbjct: 1064 NRWDRAFVSPGEMVGVLAAQSIGEPATQMTLNTFHFA 1100
[175][TOP]
>UniRef100_Q6E224 DNA-directed RNA polymerase (Fragment) n=1 Tax=Caenorhabditis
drosophilae RepID=Q6E224_9PELO
Length = 633
Score = 116 bits (290), Expect = 9e-25
Identities = 64/156 (41%), Positives = 91/156 (58%)
Frame = +3
Query: 9 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
N++RL+WNA++IF V +LSP ++ GV L + ++ +D
Sbjct: 190 NLQRLMWNAQKIFKVDMRKPVNLSPLHVIDGVRELSKKLVIVGGSDD------------- 236
Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
+S+ AQ NATLL + +R++L +K + + +L +AF WLL E+E+
Sbjct: 237 --------------ISKQAQYNATLLMNILLRSTLCTKKLCTSSKLNTEAFDWLLGEVES 282
Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
RF QA+A GEMVGA AAQS+GEPA QMTLNTFHYA
Sbjct: 283 RFMQAIAQPGEMVGALAAQSLGEPAPQMTLNTFHYA 318
[176][TOP]
>UniRef100_Q010D7 DNA-directed RNA polymerase n=1 Tax=Ostreococcus tauri
RepID=Q010D7_OSTTA
Length = 1673
Score = 115 bits (289), Expect = 1e-24
Identities = 64/159 (40%), Positives = 93/159 (58%), Gaps = 2/159 (1%)
Frame = +3
Query: 6 VNIERLIWNAKRIFDVRQ--NDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREM 179
VN++R+IWNA++ + + + +LS + ++ V LL + V+ + ++A
Sbjct: 972 VNMKRIIWNAQKQYGMYRPGGSEEELSVTHVIESVAELLPKLIVVAGTDPLSIEA----- 1026
Query: 180 LPPDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIE 359
Q N TLLF HVRA+LA+K VL +H+LTR F W++ E
Sbjct: 1027 ----------------------QRNGTLLFFAHVRANLAAKRVLKDHKLTRAGFDWVIGE 1064
Query: 360 IENRFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
+E+RF+ ALAP G+ +G AAQSIGEPATQMTLNTFH+A
Sbjct: 1065 VESRFKMALAPPGDGIGVVAAQSIGEPATQMTLNTFHFA 1103
[177][TOP]
>UniRef100_A9QMG5 DNA-directed RNA polymerase (Fragment) n=1 Tax=Mesorhabditis
longespiculosa RepID=A9QMG5_9BILA
Length = 623
Score = 115 bits (288), Expect = 2e-24
Identities = 64/156 (41%), Positives = 90/156 (57%)
Frame = +3
Query: 9 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
N++RLIWNA++IF V ++LSP +++ GV L R ++ S ED
Sbjct: 191 NLQRLIWNAQKIFKVETRKTTNLSPLRVIEGVRELSKRL-IIVSGED------------- 236
Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
+S+ AQ NATLL + +R++L SK + +H+L ++ F WLL EIE+
Sbjct: 237 -------------RISQQAQYNATLLMNILLRSTLCSKQMAEKHKLNQEGFEWLLGEIEH 283
Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
RFQQA+ G A QS+GEPATQMTLNTFH+A
Sbjct: 284 RFQQAIVXXXXXXGXLAXQSLGEPATQMTLNTFHFA 319
[178][TOP]
>UniRef100_UPI000023F34A hypothetical protein FG00916.1 n=1 Tax=Gibberella zeae PH-1
RepID=UPI000023F34A
Length = 1758
Score = 115 bits (287), Expect = 2e-24
Identities = 65/157 (41%), Positives = 94/157 (59%)
Frame = +3
Query: 6 VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLP 185
+NI R+I +AKR+F+V+ NDRS+L PS ++ V+ +L +++ + ++A A
Sbjct: 974 LNITRIIESAKRVFNVKANDRSNLRPSDVIPAVQNMLDNMKIVRGTDPISLEADA----- 1028
Query: 186 PDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIE 365
NA++LF+ +R+ LA K V+ EHRL R AF +L E++
Sbjct: 1029 ----------------------NASILFKGLLRSRLAFKEVVKEHRLNRLAFDHILGELQ 1066
Query: 366 NRFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
NR+ +A GEMVG AAQSIGEPATQMTLNTFH+A
Sbjct: 1067 NRWDRAFVNPGEMVGVLAAQSIGEPATQMTLNTFHFA 1103
[179][TOP]
>UniRef100_A4S3M0 DNA-directed RNA polymerase n=1 Tax=Ostreococcus lucimarinus CCE9901
RepID=A4S3M0_OSTLU
Length = 1646
Score = 115 bits (287), Expect = 2e-24
Identities = 65/159 (40%), Positives = 93/159 (58%), Gaps = 2/159 (1%)
Frame = +3
Query: 6 VNIERLIWNAKRIFDVRQND--RSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREM 179
VN++R++WNA++ + + + D ++ + I+ V LL + V+ + V+A
Sbjct: 952 VNMKRILWNAQKQYGLYRPDSGEEEVKVTHIIESVAELLPKLIVVPGTDPLSVEA----- 1006
Query: 180 LPPDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIE 359
Q N T+LF HVRA+LA+K VL EH+LTR F W++ E
Sbjct: 1007 ----------------------QRNGTMLFFAHVRANLAAKRVLKEHKLTRAGFDWVIGE 1044
Query: 360 IENRFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
IE+RF+ ALAP G+ +G AAQSIGEPATQMTLNTFH+A
Sbjct: 1045 IESRFKMALAPPGDGIGTVAAQSIGEPATQMTLNTFHFA 1083
[180][TOP]
>UniRef100_Q9BMP2 DNA-directed RNA polymerase (Fragment) n=1 Tax=Stylonychia mytilus
RepID=Q9BMP2_STYMT
Length = 1678
Score = 115 bits (287), Expect = 2e-24
Identities = 64/158 (40%), Positives = 95/158 (60%)
Frame = +3
Query: 3 AVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREML 182
AVN+ R+IWNAK F +R N +S+L P+ ++ ++ L+ D+ A + +
Sbjct: 869 AVNVPRIIWNAKEQFSIRPNQKSNLEPTYVLSRLQNLM--------DDLAPIPGVMIHKD 920
Query: 183 PPDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEI 362
P L A ++T LF++++R+ L SK V+ + RL++ AF W+L EI
Sbjct: 921 P---------------LILEANSDSTWLFKIYLRSLLNSKAVIQQERLSKDAFNWILGEI 965
Query: 363 ENRFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
++RF QAL GEMVG+ AQS+GEPATQMTLNTFH+A
Sbjct: 966 KSRFDQALVNPGEMVGSIGAQSMGEPATQMTLNTFHFA 1003
[181][TOP]
>UniRef100_C4R4Y0 DNA-directed RNA polymerase n=1 Tax=Pichia pastoris GS115
RepID=C4R4Y0_PICPG
Length = 1743
Score = 114 bits (286), Expect = 3e-24
Identities = 71/157 (45%), Positives = 90/157 (57%)
Frame = +3
Query: 6 VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLP 185
VN+ R+I NA++IF + + SDL+ +I+ GV L + VL +
Sbjct: 960 VNLRRIIQNAQQIFHLDRAKASDLTIPEIIHGVRDLCKKLFVLRGEN------------- 1006
Query: 186 PDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIE 365
EL + AQ NAT LFQ VRA LA++ +L E RL R AF W+L IE
Sbjct: 1007 --------------ELIKEAQQNATSLFQCLVRARLATRRILEEFRLNRDAFEWVLGTIE 1052
Query: 366 NRFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
+FQ++L GEMVG AAQSIGEPATQMTLNTFHYA
Sbjct: 1053 AQFQRSLVHPGEMVGVIAAQSIGEPATQMTLNTFHYA 1089
[182][TOP]
>UniRef100_UPI0000F24379 DNA-directed RNA polymerase II largest subunit (RNA polymerase II
subunit 1) (B220) n=1 Tax=Pichia stipitis CBS 6054
RepID=UPI0000F24379
Length = 1739
Score = 114 bits (285), Expect = 3e-24
Identities = 68/157 (43%), Positives = 90/157 (57%)
Frame = +3
Query: 6 VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLP 185
VN+ R+I NA++IF + SDL +++ GV L + V+ D
Sbjct: 959 VNLRRIIQNAQQIFHNGRYKASDLRLDEVIVGVRSLCEKLLVVRGDT------------- 1005
Query: 186 PDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIE 365
EL + AQ NATLLFQ VR+ LAS+ V+ E +L R +F W++ EIE
Sbjct: 1006 --------------ELVKEAQANATLLFQCLVRSRLASRRVIEEFKLNRSSFEWVVGEIE 1051
Query: 366 NRFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
+FQ+++ GEMVG AAQSIGEPATQMTLNTFHYA
Sbjct: 1052 TQFQKSIVHPGEMVGVIAAQSIGEPATQMTLNTFHYA 1088
[183][TOP]
>UniRef100_A3GID7 DNA-directed RNA polymerase n=1 Tax=Pichia stipitis
RepID=A3GID7_PICST
Length = 1739
Score = 114 bits (285), Expect = 3e-24
Identities = 68/157 (43%), Positives = 90/157 (57%)
Frame = +3
Query: 6 VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLP 185
VN+ R+I NA++IF + SDL +++ GV L + V+ D
Sbjct: 959 VNLRRIIQNAQQIFHNGRYKASDLRLDEVIVGVRSLCEKLLVVRGDT------------- 1005
Query: 186 PDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIE 365
EL + AQ NATLLFQ VR+ LAS+ V+ E +L R +F W++ EIE
Sbjct: 1006 --------------ELVKEAQANATLLFQCLVRSRLASRRVIEEFKLNRSSFEWVVGEIE 1051
Query: 366 NRFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
+FQ+++ GEMVG AAQSIGEPATQMTLNTFHYA
Sbjct: 1052 TQFQKSIVHPGEMVGVIAAQSIGEPATQMTLNTFHYA 1088
[184][TOP]
>UniRef100_Q9NJN1 RNA polymerase II largest subunit (Fragment) n=1 Tax=Semibalanus
balanoides RepID=Q9NJN1_SEMBA
Length = 256
Score = 114 bits (284), Expect = 4e-24
Identities = 63/145 (43%), Positives = 87/145 (60%)
Frame = +3
Query: 42 IFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEA 221
IF +++ + +DLSP K++ GV LL R V+ ++
Sbjct: 1 IFHIKKTEPTDLSPLKVLEGVRTLLSRCVVVRGED------------------------- 35
Query: 222 LKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGE 401
LS+TA NAT+LF VR++L ++ V E+RL+ +AF WL+ EI+ RF QA+ GE
Sbjct: 36 --RLSKTANANATILFSCLVRSTLCTRRVAEEYRLSSEAFEWLIGEIDTRFHQAMVNPGE 93
Query: 402 MVGATAAQSIGEPATQMTLNTFHYA 476
MVGA AAQS+GEPATQMTLNTFH+A
Sbjct: 94 MVGALAAQSLGEPATQMTLNTFHFA 118
[185][TOP]
>UniRef100_UPI000151A8B3 hypothetical protein PGUG_01105 n=1 Tax=Pichia guilliermondii ATCC
6260 RepID=UPI000151A8B3
Length = 1018
Score = 113 bits (283), Expect = 6e-24
Identities = 69/157 (43%), Positives = 90/157 (57%)
Frame = +3
Query: 6 VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLP 185
VN+ R+I NA+++F ++ SDL +IV GV+ L + VL D
Sbjct: 225 VNLRRIIQNAQQLFHGGRHKASDLRLEEIVEGVKELCKKLLVLRGDSP------------ 272
Query: 186 PDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIE 365
L + +Q NATLLFQ VR+ LA++ V+ E RL R +F W + EIE
Sbjct: 273 ---------------LVKESQENATLLFQCLVRSRLATRRVIEEFRLNRMSFEWAMGEIE 317
Query: 366 NRFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
+FQ++L GEMVG AAQSIGEPATQMTLNTFHYA
Sbjct: 318 TQFQKSLVHPGEMVGVIAAQSIGEPATQMTLNTFHYA 354
[186][TOP]
>UniRef100_A5DCV3 DNA-directed RNA polymerase II subunit RPB1 (Fragments) n=1
Tax=Pichia guilliermondii RepID=RPB1_PICGU
Length = 1579
Score = 113 bits (283), Expect = 6e-24
Identities = 69/157 (43%), Positives = 90/157 (57%)
Frame = +3
Query: 6 VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLP 185
VN+ R+I NA+++F ++ SDL +IV GV+ L + VL D
Sbjct: 791 VNLRRIIQNAQQLFHGGRHKASDLRLEEIVEGVKELCKKLLVLRGDSP------------ 838
Query: 186 PDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIE 365
L + +Q NATLLFQ VR+ LA++ V+ E RL R +F W + EIE
Sbjct: 839 ---------------LVKESQENATLLFQCLVRSRLATRRVIEEFRLNRMSFEWAMGEIE 883
Query: 366 NRFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
+FQ++L GEMVG AAQSIGEPATQMTLNTFHYA
Sbjct: 884 TQFQKSLVHPGEMVGVIAAQSIGEPATQMTLNTFHYA 920
[187][TOP]
>UniRef100_Q6JU33 RNA polymerase II largest subunit (Fragment) n=1 Tax=Limnadia
lenticularis RepID=Q6JU33_9CRUS
Length = 256
Score = 113 bits (282), Expect = 8e-24
Identities = 65/145 (44%), Positives = 87/145 (60%)
Frame = +3
Query: 42 IFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEA 221
IF + + +DL+P ++++GV LL + + ++
Sbjct: 1 IFHINKRMPTDLNPVRVIQGVRDLLQKCIAVPGED------------------------- 35
Query: 222 LKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGE 401
+LS+ A NATLLFQ VRA+L +K V E+RL+ +AF WL+ EIE RF QA AP GE
Sbjct: 36 --KLSKQANENATLLFQTLVRATLCTKRVAEEYRLSSEAFEWLIGEIETRFLQAQAPPGE 93
Query: 402 MVGATAAQSIGEPATQMTLNTFHYA 476
MVGA AAQS+GEPATQMTLNTFH+A
Sbjct: 94 MVGALAAQSLGEPATQMTLNTFHFA 118
[188][TOP]
>UniRef100_O00820 DNA-directed RNA polymerase (Fragment) n=1 Tax=Acanthamoeba
castellanii RepID=O00820_ACACA
Length = 1569
Score = 113 bits (282), Expect = 8e-24
Identities = 67/157 (42%), Positives = 92/157 (58%)
Frame = +3
Query: 6 VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLP 185
VN+ R+I NA++IF + SDL P +IV + L+ R V+ +D
Sbjct: 888 VNLTRMILNAQKIFHLGPKKVSDLDPCQIVEDLGNLIERLVVIPGQDD------------ 935
Query: 186 PDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIE 365
+S+ AQ NA LLF + +R +LAS+ VL E+RL + ++ WLL EI
Sbjct: 936 ---------------ISKEAQANAILLFSILLRFTLASRRVLQEYRLDQISWDWLLGEIT 980
Query: 366 NRFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
+RF ++L GEM+GA AAQSIGEPATQMTLNTFH+A
Sbjct: 981 DRFYKSLCDPGEMIGALAAQSIGEPATQMTLNTFHFA 1017
[189][TOP]
>UniRef100_Q9BMP3 DNA-directed RNA polymerase (Fragment) n=1 Tax=Monosiga brevicollis
RepID=Q9BMP3_MONBE
Length = 1743
Score = 112 bits (281), Expect = 1e-23
Identities = 65/157 (41%), Positives = 88/157 (56%)
Frame = +3
Query: 6 VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLP 185
V + RLI +A++ F++ +DLSP+ + + + R V+ D+
Sbjct: 899 VQLRRLIISAQKEFNIDPRRPTDLSPAHVAQAIRTFTDRLVVIPGDDP------------ 946
Query: 186 PDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIE 365
LS+ AQ NATLLF ++R+ L+S+ + HRL KAF W+L E+E
Sbjct: 947 ---------------LSKVAQRNATLLFNCNLRSVLSSRQCIVRHRLNTKAFDWILGEVE 991
Query: 366 NRFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
RF QA A GEMVGA AAQS+GEPATQMTLNTFH A
Sbjct: 992 KRFMQAQAQPGEMVGALAAQSLGEPATQMTLNTFHLA 1028
[190][TOP]
>UniRef100_A9V5W6 DNA-directed RNA polymerase n=1 Tax=Monosiga brevicollis
RepID=A9V5W6_MONBE
Length = 1307
Score = 112 bits (281), Expect = 1e-23
Identities = 65/157 (41%), Positives = 88/157 (56%)
Frame = +3
Query: 6 VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLP 185
V + RLI +A++ F++ +DLSP+ + + + R V+ D+
Sbjct: 463 VQLRRLIISAQKEFNIDPRRPTDLSPAHVAQAIRTFTDRLVVIPGDDP------------ 510
Query: 186 PDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIE 365
LS+ AQ NATLLF ++R+ L+S+ + HRL KAF W+L E+E
Sbjct: 511 ---------------LSKVAQRNATLLFNCNLRSVLSSRQCIVRHRLNTKAFDWILGEVE 555
Query: 366 NRFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
RF QA A GEMVGA AAQS+GEPATQMTLNTFH A
Sbjct: 556 KRFMQAQAQPGEMVGALAAQSLGEPATQMTLNTFHLA 592
[191][TOP]
>UniRef100_Q9NJI9 RNA polymerase II largest subunit (Fragment) n=1 Tax=Tanystylum
orbiculare RepID=Q9NJI9_9CHEL
Length = 256
Score = 112 bits (280), Expect = 1e-23
Identities = 66/145 (45%), Positives = 84/145 (57%)
Frame = +3
Query: 42 IFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEA 221
IF + + +DLSP +++ GVE L+ + ++ D+
Sbjct: 1 IFHINKRAPTDLSPLRVIHGVEDLVKKLVIVPGDD------------------------- 35
Query: 222 LKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGE 401
LS A NATLLFQ +R++L SK V E RL+ +AF WLL EI+ RFQQA GE
Sbjct: 36 --RLSLQANENATLLFQALLRSTLCSKKVAEEFRLSTEAFDWLLGEIDTRFQQAQVMPGE 93
Query: 402 MVGATAAQSIGEPATQMTLNTFHYA 476
MVGA AAQS+GEPATQMTLNTFHYA
Sbjct: 94 MVGALAAQSLGEPATQMTLNTFHYA 118
[192][TOP]
>UniRef100_A9QMS4 DNA-directed RNA polymerase (Fragment) n=1 Tax=Poikilolaimus
oxycercus RepID=A9QMS4_9BILA
Length = 612
Score = 112 bits (280), Expect = 1e-23
Identities = 60/156 (38%), Positives = 90/156 (57%)
Frame = +3
Query: 9 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
NI+RLIWNA++IF V + ++LSP ++ + L + +++ D+
Sbjct: 187 NIQRLIWNAQKIFRVDNRNPTELSPLYVIEAIRKLSEKLVIVSGDD-------------- 232
Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
++S+ AQ NATLL + +R++L SK V +HRL ++AF ++L EIEN
Sbjct: 233 -------------KISQQAQYNATLLMNILIRSTLCSKQVAEKHRLNQEAFEYILGEIEN 279
Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
RFQ+A+ G AQ +G+PATQMTLNTFHYA
Sbjct: 280 RFQRAIVXXXXXXGVLXAQXLGQPATQMTLNTFHYA 315
[193][TOP]
>UniRef100_B2AA31 DNA-directed RNA polymerase n=1 Tax=Podospora anserina
RepID=B2AA31_PODAN
Length = 1748
Score = 112 bits (280), Expect = 1e-23
Identities = 65/157 (41%), Positives = 90/157 (57%)
Frame = +3
Query: 6 VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLP 185
+NI R+I AK++F V RSDL+P ++ V+ LL R V+ ++
Sbjct: 974 LNIGRIIDTAKKLFKVDSTQRSDLTPKDVIPAVQALLARMVVVRGED------------- 1020
Query: 186 PDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIE 365
ELS A NAT+LF++ +R+ LA K + E RL + AF +L E+E
Sbjct: 1021 --------------ELSREADYNATILFKIQIRSRLAFKRLAVEQRLNKLAFDHVLGELE 1066
Query: 366 NRFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
NR+ +++ GEMVG AAQSIGEPATQMTLNTFH+A
Sbjct: 1067 NRWSRSMVSPGEMVGVLAAQSIGEPATQMTLNTFHFA 1103
[194][TOP]
>UniRef100_Q6JU18 RNA polymerase II largest subunit (Fragment) n=1 Tax=Mesocyclops
edax RepID=Q6JU18_9MAXI
Length = 302
Score = 112 bits (279), Expect = 2e-23
Identities = 68/145 (46%), Positives = 85/145 (58%)
Frame = +3
Query: 42 IFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEA 221
IF + + DLSP K++ GV LL + V+ ED
Sbjct: 1 IFHINKRHPCDLSPLKVITGVRDLLEKC-VIVKGED------------------------ 35
Query: 222 LKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGE 401
+LS+ A NAT LFQ VR++L SK+V + RL+ +AF WLL EIE++F QA A GE
Sbjct: 36 --KLSKQANENATTLFQCLVRSTLCSKLVAEQFRLSEEAFEWLLGEIESKFMQAQATPGE 93
Query: 402 MVGATAAQSIGEPATQMTLNTFHYA 476
MVGA AAQSIGEPATQMTLNTFH+A
Sbjct: 94 MVGAIAAQSIGEPATQMTLNTFHFA 118
[195][TOP]
>UniRef100_C1H3Q4 DNA-directed RNA polymerase n=1 Tax=Paracoccidioides brasiliensis
Pb01 RepID=C1H3Q4_PARBA
Length = 1748
Score = 112 bits (279), Expect = 2e-23
Identities = 67/157 (42%), Positives = 95/157 (60%)
Frame = +3
Query: 6 VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLP 185
+N++R++ +AK IF +R+ SDL P++++ V LL R V+ D D I+RE
Sbjct: 987 INVQRILESAKTIFRIREGAISDLHPAEVIPQVRALLDRLVVVRGD-----DVISRE--- 1038
Query: 186 PDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIE 365
AQ +ATLLF+ +R+ LA + +++E+ L + AF +L IE
Sbjct: 1039 -------------------AQESATLLFKAQLRSRLAFRRLVTEYSLNKLAFQHVLGAIE 1079
Query: 366 NRFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
NRF +A+A GEMVG AAQSIGEPATQMTLNTFH+A
Sbjct: 1080 NRFSRAMANPGEMVGVLAAQSIGEPATQMTLNTFHFA 1116
[196][TOP]
>UniRef100_C1GHL1 DNA-directed RNA polymerase n=1 Tax=Paracoccidioides brasiliensis
Pb18 RepID=C1GHL1_PARBD
Length = 1746
Score = 112 bits (279), Expect = 2e-23
Identities = 67/157 (42%), Positives = 95/157 (60%)
Frame = +3
Query: 6 VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLP 185
+N++R++ +AK IF +R+ SDL P++++ V LL R V+ D D I+RE
Sbjct: 981 INVQRILESAKTIFRIREGAISDLHPAEVIPQVRALLDRLVVVRGD-----DVISRE--- 1032
Query: 186 PDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIE 365
AQ +ATLLF+ +R+ LA + +++E+ L + AF +L IE
Sbjct: 1033 -------------------AQESATLLFKAQLRSRLAFRRLVTEYSLNKLAFQHVLGAIE 1073
Query: 366 NRFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
NRF +A+A GEMVG AAQSIGEPATQMTLNTFH+A
Sbjct: 1074 NRFSRAMANPGEMVGVLAAQSIGEPATQMTLNTFHFA 1110
[197][TOP]
>UniRef100_C0SE75 DNA-directed RNA polymerase n=1 Tax=Paracoccidioides brasiliensis
Pb03 RepID=C0SE75_PARBP
Length = 2106
Score = 112 bits (279), Expect = 2e-23
Identities = 67/157 (42%), Positives = 95/157 (60%)
Frame = +3
Query: 6 VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLP 185
+N++R++ +AK IF +R+ SDL P++++ V LL R V+ D D I+RE
Sbjct: 981 INVQRILESAKTIFRIREGAISDLHPAEVIPQVRALLDRLVVVRGD-----DVISRE--- 1032
Query: 186 PDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIE 365
AQ +ATLLF+ +R+ LA + +++E+ L + AF +L IE
Sbjct: 1033 -------------------AQESATLLFKAQLRSRLAFRRLVTEYSLNKLAFQHVLGAIE 1073
Query: 366 NRFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
NRF +A+A GEMVG AAQSIGEPATQMTLNTFH+A
Sbjct: 1074 NRFSRAMANPGEMVGVLAAQSIGEPATQMTLNTFHFA 1110
[198][TOP]
>UniRef100_B4YT40 DNA-directed RNA polymerase (Fragment) n=1 Tax=Dineutes sublineatus
RepID=B4YT40_9COLE
Length = 562
Score = 111 bits (278), Expect = 2e-23
Identities = 62/146 (42%), Positives = 86/146 (58%)
Frame = +3
Query: 9 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
N++R+IWN ++IF + + ++DLSP ++++GV LL + ++ D+
Sbjct: 444 NLQRMIWNVQKIFHINKRAQTDLSPLRVIQGVRDLLQKCVIVAGDD-------------- 489
Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
LS+ A NATLLFQ VRA+L +K V E RL+ +AF WL+ EIE
Sbjct: 490 -------------RLSKQANENATLLFQCLVRATLCTKCVSEEFRLSTEAFEWLIGEIET 536
Query: 369 RFQQALAPAGEMVGATAAQSIGEPAT 446
RFQQA GEMVGA AAQS+GEPAT
Sbjct: 537 RFQQAQCAPGEMVGALAAQSLGEPAT 562
[199][TOP]
>UniRef100_A9QMR7 DNA-directed RNA polymerase (Fragment) n=1 Tax=Bunonema reticulatum
RepID=A9QMR7_9BILA
Length = 614
Score = 111 bits (278), Expect = 2e-23
Identities = 66/156 (42%), Positives = 87/156 (55%)
Frame = +3
Query: 9 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
N++RLIWNA++IF V LSP +++ GV L R V+ S ED
Sbjct: 177 NVQRLIWNAQKIFHVEIRRPVSLSPLRVIEGVRELTARL-VIVSGED------------- 222
Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
+S+ AQ NATLL ++ +R++L S+ + +HRL +AF WLL E+
Sbjct: 223 -------------HISQHAQENATLLIKILLRSTLCSRKMAEQHRLNAEAFEWLLGEVXT 269
Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
RFQQA A AAQS+GEPATQMTLNTFHYA
Sbjct: 270 RFQQAXXXXXXXXXALAAQSLGEPATQMTLNTFHYA 305
[200][TOP]
>UniRef100_UPI00003BD271 hypothetical protein DEHA0A14036g n=1 Tax=Debaryomyces hansenii
CBS767 RepID=UPI00003BD271
Length = 1749
Score = 111 bits (277), Expect = 3e-23
Identities = 66/157 (42%), Positives = 93/157 (59%)
Frame = +3
Query: 6 VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLP 185
VN+ R+I NA++IF ++ SDL ++VRGV+ L + V+
Sbjct: 964 VNLRRIIQNAQQIFHNGRHKASDLRLDEVVRGVQDLCTKLLVI----------------- 1006
Query: 186 PDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIE 365
L++ AQ NATLLFQ +R+ LA++ V+ E +L+R +F W++ EIE
Sbjct: 1007 ----------RGKTALTKEAQENATLLFQCLLRSRLATRRVIEEFKLSRISFEWVMGEIE 1056
Query: 366 NRFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
+FQ+++ GEMVG AAQSIGEPATQMTLNTFHYA
Sbjct: 1057 TQFQKSIVHPGEMVGVIAAQSIGEPATQMTLNTFHYA 1093
[201][TOP]
>UniRef100_B4YT42 DNA-directed RNA polymerase (Fragment) n=1 Tax=Amphizoa lecontei
RepID=B4YT42_AMPLE
Length = 562
Score = 111 bits (277), Expect = 3e-23
Identities = 62/146 (42%), Positives = 84/146 (57%)
Frame = +3
Query: 9 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
N++R+IWN ++IF + + +DLSP ++++GV LL + ++ D+
Sbjct: 444 NLQRMIWNVQKIFHINKRATTDLSPLRVIQGVRQLLQKCIIVAGDD-------------- 489
Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
LS A NATLLFQ VRA+L +K V E RL+ +AF WL+ EIE
Sbjct: 490 -------------RLSRQANENATLLFQCLVRATLCTKCVSEEFRLSTEAFEWLIGEIET 536
Query: 369 RFQQALAPAGEMVGATAAQSIGEPAT 446
RFQQA GEMVGA AAQS+GEPAT
Sbjct: 537 RFQQAQCAPGEMVGALAAQSLGEPAT 562
[202][TOP]
>UniRef100_B5RSM9 DNA-directed RNA polymerase n=1 Tax=Debaryomyces hansenii
RepID=B5RSM9_DEBHA
Length = 1749
Score = 111 bits (277), Expect = 3e-23
Identities = 66/157 (42%), Positives = 93/157 (59%)
Frame = +3
Query: 6 VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLP 185
VN+ R+I NA++IF ++ SDL ++VRGV+ L + V+
Sbjct: 964 VNLRRIIQNAQQIFHNGRHKASDLRLDEVVRGVQDLCTKLLVI----------------- 1006
Query: 186 PDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIE 365
L++ AQ NATLLFQ +R+ LA++ V+ E +L+R +F W++ EIE
Sbjct: 1007 ----------RGKTALTKEAQENATLLFQCLLRSRLATRRVIEEFKLSRISFEWVMGEIE 1056
Query: 366 NRFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
+FQ+++ GEMVG AAQSIGEPATQMTLNTFHYA
Sbjct: 1057 TQFQKSIVHPGEMVGVIAAQSIGEPATQMTLNTFHYA 1093
[203][TOP]
>UniRef100_Q9NJL5 RNA polymerase II largest subunit (Fragment) n=1 Tax=Metajapyx
subterraneus RepID=Q9NJL5_9HEXA
Length = 256
Score = 110 bits (276), Expect = 4e-23
Identities = 63/145 (43%), Positives = 86/145 (59%)
Frame = +3
Query: 42 IFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEA 221
IF + + +DLSP ++++GV+ LL + ++ D+
Sbjct: 1 IFHIDKRAPTDLSPLRVIQGVQELLRKCVIVAGDD------------------------- 35
Query: 222 LKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGE 401
LS+ A NATLLFQ VR++L ++ V E RL+ +AF WL+ E+E RFQQA GE
Sbjct: 36 --RLSKMANDNATLLFQCLVRSTLCTRRVAXEFRLSSEAFEWLIGEVETRFQQAQVXPGE 93
Query: 402 MVGATAAQSIGEPATQMTLNTFHYA 476
MVGA AAQS+GEPATQMTLNTFH+A
Sbjct: 94 MVGALAAQSLGEPATQMTLNTFHFA 118
[204][TOP]
>UniRef100_B4YT54 DNA-directed RNA polymerase (Fragment) n=2 Tax=Odontium subgenus
complex RepID=B4YT54_9CARA
Length = 473
Score = 110 bits (275), Expect = 5e-23
Identities = 64/146 (43%), Positives = 87/146 (59%)
Frame = +3
Query: 9 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
N++R+IWN ++IF + + +DLSP ++++GV LL + V+ + ED
Sbjct: 355 NLQRMIWNVQKIFHINKRSPTDLSPIRVIQGVRDLLQKC-VIVAGED------------- 400
Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
LS+ A NATLLFQ VRA+L +K V E RL+ +AF WL+ EIE
Sbjct: 401 -------------RLSKQANENATLLFQCLVRATLCTKCVSEEFRLSTEAFEWLIGEIET 447
Query: 369 RFQQALAPAGEMVGATAAQSIGEPAT 446
RFQQA + GEMVGA AAQS+GEPAT
Sbjct: 448 RFQQAQSAPGEMVGALAAQSLGEPAT 473
[205][TOP]
>UniRef100_B4YT49 DNA-directed RNA polymerase (Fragment) n=1 Tax=Bembidion
mandibulare RepID=B4YT49_9CARA
Length = 562
Score = 110 bits (275), Expect = 5e-23
Identities = 64/146 (43%), Positives = 87/146 (59%)
Frame = +3
Query: 9 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
N++R+IWN ++IF + + +DLSP ++++GV LL + V+ + ED
Sbjct: 444 NLQRMIWNVQKIFHINKRSPTDLSPIRVIQGVRDLLQKC-VIVAGED------------- 489
Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
LS+ A NATLLFQ VRA+L +K V E RL+ +AF WL+ EIE
Sbjct: 490 -------------RLSKQANENATLLFQCLVRATLCTKCVSEEFRLSTEAFEWLIGEIET 536
Query: 369 RFQQALAPAGEMVGATAAQSIGEPAT 446
RFQQA + GEMVGA AAQS+GEPAT
Sbjct: 537 RFQQAQSAPGEMVGALAAQSLGEPAT 562
[206][TOP]
>UniRef100_B4YT48 DNA-directed RNA polymerase (Fragment) n=2 Tax=Notaphus
RepID=B4YT48_9CARA
Length = 562
Score = 110 bits (275), Expect = 5e-23
Identities = 64/146 (43%), Positives = 87/146 (59%)
Frame = +3
Query: 9 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
N++R+IWN ++IF + + +DLSP ++++GV LL + V+ + ED
Sbjct: 444 NLQRMIWNVQKIFHINKRSPTDLSPIRVIQGVRDLLQKC-VIVAGED------------- 489
Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
LS+ A NATLLFQ VRA+L +K V E RL+ +AF WL+ EIE
Sbjct: 490 -------------RLSKQANENATLLFQCLVRATLCTKCVSEEFRLSTEAFEWLIGEIET 536
Query: 369 RFQQALAPAGEMVGATAAQSIGEPAT 446
RFQQA + GEMVGA AAQS+GEPAT
Sbjct: 537 RFQQAQSAPGEMVGALAAQSLGEPAT 562
[207][TOP]
>UniRef100_B4YT46 DNA-directed RNA polymerase (Fragment) n=3 Tax=Bembidion
RepID=B4YT46_9CARA
Length = 562
Score = 110 bits (275), Expect = 5e-23
Identities = 64/146 (43%), Positives = 87/146 (59%)
Frame = +3
Query: 9 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
N++R+IWN ++IF + + +DLSP ++++GV LL + V+ + ED
Sbjct: 444 NLQRMIWNVQKIFHINKRSPTDLSPIRVIQGVRDLLQKC-VIVAGED------------- 489
Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
LS+ A NATLLFQ VRA+L +K V E RL+ +AF WL+ EIE
Sbjct: 490 -------------RLSKQANENATLLFQCLVRATLCTKCVSEEFRLSTEAFEWLIGEIET 536
Query: 369 RFQQALAPAGEMVGATAAQSIGEPAT 446
RFQQA + GEMVGA AAQS+GEPAT
Sbjct: 537 RFQQAQSAPGEMVGALAAQSLGEPAT 562
[208][TOP]
>UniRef100_B4YT44 DNA-directed RNA polymerase (Fragment) n=1 Tax=Asaphidion yukonense
RepID=B4YT44_9CARA
Length = 562
Score = 110 bits (275), Expect = 5e-23
Identities = 64/146 (43%), Positives = 87/146 (59%)
Frame = +3
Query: 9 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
N++R+IWN ++IF + + +DLSP ++++GV LL + V+ + ED
Sbjct: 444 NLQRMIWNVQKIFHINKRSPTDLSPIRVIQGVRDLLQKC-VIVAGED------------- 489
Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
LS+ A NATLLFQ VRA+L +K V E RL+ +AF WL+ EIE
Sbjct: 490 -------------RLSKLANENATLLFQCLVRATLCTKCVSEEFRLSTEAFEWLIGEIET 536
Query: 369 RFQQALAPAGEMVGATAAQSIGEPAT 446
RFQQA + GEMVGA AAQS+GEPAT
Sbjct: 537 RFQQAQSAPGEMVGALAAQSLGEPAT 562
[209][TOP]
>UniRef100_B4YT36 DNA-directed RNA polymerase (Fragment) n=1 Tax=Chauliognathus
opacus RepID=B4YT36_9COLE
Length = 629
Score = 110 bits (275), Expect = 5e-23
Identities = 62/146 (42%), Positives = 86/146 (58%)
Frame = +3
Query: 9 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
N++R+IWN ++IF + + +DLSP ++++GV LL + ++ D+
Sbjct: 511 NLQRMIWNVQKIFHINKRAPTDLSPLRVIQGVRELLKKCIIVAGDD-------------- 556
Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
LS+ A NATLLFQ VR++L +K V E RL+ +AF WL+ EIE
Sbjct: 557 -------------RLSKQANENATLLFQCLVRSTLCTKCVSEEFRLSTEAFEWLIGEIET 603
Query: 369 RFQQALAPAGEMVGATAAQSIGEPAT 446
RFQQA A GEMVGA AAQS+GEPAT
Sbjct: 604 RFQQAQANPGEMVGALAAQSLGEPAT 629
[210][TOP]
>UniRef100_B3FA71 RNA polymerase II largest subunit (Fragment) n=2 Tax=Pseudoperyphus
RepID=B3FA71_9CARA
Length = 227
Score = 110 bits (275), Expect = 5e-23
Identities = 64/146 (43%), Positives = 87/146 (59%)
Frame = +3
Query: 9 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
N++R+IWN ++IF + + +DLSP ++++GV LL + V+ + ED
Sbjct: 109 NLQRMIWNVQKIFHINKRSPTDLSPIRVIQGVRDLLQKC-VIVAGED------------- 154
Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
LS+ A NATLLFQ VRA+L +K V E RL+ +AF WL+ EIE
Sbjct: 155 -------------RLSKQANENATLLFQCLVRATLCTKCVSEEFRLSTEAFEWLIGEIET 201
Query: 369 RFQQALAPAGEMVGATAAQSIGEPAT 446
RFQQA + GEMVGA AAQS+GEPAT
Sbjct: 202 RFQQAQSAPGEMVGALAAQSLGEPAT 227
[211][TOP]
>UniRef100_B3FA50 RNA polymerase II largest subunit (Fragment) n=1 Tax=Bembidion
coxendix RepID=B3FA50_9CARA
Length = 225
Score = 110 bits (275), Expect = 5e-23
Identities = 64/146 (43%), Positives = 87/146 (59%)
Frame = +3
Query: 9 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
N++R+IWN ++IF + + +DLSP ++++GV LL + V+ + ED
Sbjct: 107 NLQRMIWNVQKIFHINKRSPTDLSPIRVIQGVRDLLQKC-VIVAGED------------- 152
Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
LS+ A NATLLFQ VRA+L +K V E RL+ +AF WL+ EIE
Sbjct: 153 -------------RLSKQANENATLLFQCLVRATLCTKCVSEEFRLSTEAFEWLIGEIET 199
Query: 369 RFQQALAPAGEMVGATAAQSIGEPAT 446
RFQQA + GEMVGA AAQS+GEPAT
Sbjct: 200 RFQQAQSAPGEMVGALAAQSLGEPAT 225
[212][TOP]
>UniRef100_B3FA44 RNA polymerase II largest subunit (Fragment) n=3 Tax=Odontium
subgenus complex RepID=B3FA44_9CARA
Length = 227
Score = 110 bits (275), Expect = 5e-23
Identities = 64/146 (43%), Positives = 87/146 (59%)
Frame = +3
Query: 9 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
N++R+IWN ++IF + + +DLSP ++++GV LL + V+ + ED
Sbjct: 109 NLQRMIWNVQKIFHINKRSPTDLSPIRVIQGVRDLLQKC-VIVAGED------------- 154
Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
LS+ A NATLLFQ VRA+L +K V E RL+ +AF WL+ EIE
Sbjct: 155 -------------RLSKQANENATLLFQCLVRATLCTKCVSEEFRLSTEAFEWLIGEIET 201
Query: 369 RFQQALAPAGEMVGATAAQSIGEPAT 446
RFQQA + GEMVGA AAQS+GEPAT
Sbjct: 202 RFQQAQSAPGEMVGALAAQSLGEPAT 227
[213][TOP]
>UniRef100_B3FA43 RNA polymerase II largest subunit (Fragment) n=16 Tax=Bembidion
RepID=B3FA43_9CARA
Length = 227
Score = 110 bits (275), Expect = 5e-23
Identities = 64/146 (43%), Positives = 87/146 (59%)
Frame = +3
Query: 9 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
N++R+IWN ++IF + + +DLSP ++++GV LL + V+ + ED
Sbjct: 109 NLQRMIWNVQKIFHINKRSPTDLSPIRVIQGVRDLLQKC-VIVAGED------------- 154
Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
LS+ A NATLLFQ VRA+L +K V E RL+ +AF WL+ EIE
Sbjct: 155 -------------RLSKQANENATLLFQCLVRATLCTKCVSEEFRLSTEAFEWLIGEIET 201
Query: 369 RFQQALAPAGEMVGATAAQSIGEPAT 446
RFQQA + GEMVGA AAQS+GEPAT
Sbjct: 202 RFQQAQSAPGEMVGALAAQSLGEPAT 227
[214][TOP]
>UniRef100_B3FA42 RNA polymerase II largest subunit (Fragment) n=1 Tax=Bembidion
californicum RepID=B3FA42_9CARA
Length = 227
Score = 110 bits (275), Expect = 5e-23
Identities = 64/146 (43%), Positives = 87/146 (59%)
Frame = +3
Query: 9 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
N++R+IWN ++IF + + +DLSP ++++GV LL + V+ + ED
Sbjct: 109 NLQRMIWNVQKIFHINKRSPTDLSPIRVIQGVRDLLQKC-VIVAGED------------- 154
Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
LS+ A NATLLFQ VRA+L +K V E RL+ +AF WL+ EIE
Sbjct: 155 -------------RLSKQANENATLLFQCLVRATLCTKCVSEEFRLSTEAFEWLIGEIET 201
Query: 369 RFQQALAPAGEMVGATAAQSIGEPAT 446
RFQQA + GEMVGA AAQS+GEPAT
Sbjct: 202 RFQQAQSAPGEMVGALAAQSLGEPAT 227
[215][TOP]
>UniRef100_Q5KGG3 DNA-directed RNA polymerase n=1 Tax=Filobasidiella neoformans
RepID=Q5KGG3_CRYNE
Length = 1786
Score = 110 bits (275), Expect = 5e-23
Identities = 65/157 (41%), Positives = 90/157 (57%)
Frame = +3
Query: 6 VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLP 185
VNI+R+I N+++IF + SDL P ++ + L R V+ D+
Sbjct: 974 VNIQRVIQNSQQIFHIDPRVPSDLDPVYLLEQRDALADRLLVVRGDD------------- 1020
Query: 186 PDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIE 365
+LS AQ NATL+F + +R+ LA++ VL E+ L R+AF W++ E+E
Sbjct: 1021 --------------KLSRAAQKNATLVFNMLLRSHLATRRVLEEYHLNREAFDWVIGEVE 1066
Query: 366 NRFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
F +A+ A EMVG AAQSIGEPATQMTLNTFHYA
Sbjct: 1067 QIFNKAVVNAAEMVGTLAAQSIGEPATQMTLNTFHYA 1103
[216][TOP]
>UniRef100_C0NEY2 DNA-directed RNA polymerase n=1 Tax=Ajellomyces capsulatus G186AR
RepID=C0NEY2_AJECG
Length = 1234
Score = 110 bits (275), Expect = 5e-23
Identities = 67/157 (42%), Positives = 94/157 (59%)
Frame = +3
Query: 6 VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLP 185
+N++R++ +AK IF +R+ SDL P++++ V LL R V+ D D I+RE
Sbjct: 468 INVQRILESAKTIFRIREGAISDLHPAEVIPQVRALLERLVVVRGD-----DVISRE--- 519
Query: 186 PDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIE 365
AQ +ATLLF+ +R+ LA + ++ E+ L R AF +L IE
Sbjct: 520 -------------------AQESATLLFKAQLRSRLAFRRLVVEYSLNRLAFQHVLGAIE 560
Query: 366 NRFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
+RF +A+A GEMVG AAQSIGEPATQMTLNTFH+A
Sbjct: 561 SRFSKAMANPGEMVGVLAAQSIGEPATQMTLNTFHFA 597
[217][TOP]
>UniRef100_Q2N1B5 DNA-directed RNA polymerase II largest subunit (Fragment) n=1
Tax=Platynereis dumerilii RepID=Q2N1B5_PLADU
Length = 248
Score = 110 bits (274), Expect = 6e-23
Identities = 57/152 (37%), Positives = 86/152 (56%)
Frame = +3
Query: 9 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
N+ RLIWNA++IF + +DL P K+V G+ L + ++ ++ +DA
Sbjct: 124 NLNRLIWNAQKIFRINIRKPTDLHPVKVVEGIRELSKKFLIVKGEDKLSIDA-------- 175
Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
+NAT+L + +R+ L ++ ++ + RL+ +AF WLL E+E+
Sbjct: 176 -------------------NINATMLMNILIRSRLCARTIIEDDRLSSEAFEWLLGEVES 216
Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNT 464
RF QA+ GEMVG AAQS+GEPATQMTLNT
Sbjct: 217 RFNQAMVTPGEMVGPLAAQSLGEPATQMTLNT 248
[218][TOP]
>UniRef100_B4YT45 RNA polymerase II large subunit (Fragment) n=1 Tax=Sirdenus grayii
RepID=B4YT45_9CARA
Length = 227
Score = 110 bits (274), Expect = 6e-23
Identities = 64/146 (43%), Positives = 86/146 (58%)
Frame = +3
Query: 9 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
N++R+IWN ++IF + + +DLSP ++++GV LL + V+ + ED
Sbjct: 109 NLQRMIWNVQKIFHINKRSPTDLSPIRVIQGVRDLLQKC-VIVAGED------------- 154
Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
LS+ A NATLLFQ VRA+L +K V E RL+ +AF WL+ EIE
Sbjct: 155 -------------RLSKQANENATLLFQCLVRATLCTKYVSEEFRLSTEAFEWLIGEIET 201
Query: 369 RFQQALAPAGEMVGATAAQSIGEPAT 446
RFQQA GEMVGA AAQS+GEPAT
Sbjct: 202 RFQQAQCAPGEMVGALAAQSLGEPAT 227
[219][TOP]
>UniRef100_B8BQ02 DNA-directed RNA polymerase n=1 Tax=Thalassiosira pseudonana CCMP1335
RepID=B8BQ02_THAPS
Length = 1627
Score = 109 bits (273), Expect = 8e-23
Identities = 66/156 (42%), Positives = 86/156 (55%)
Frame = +3
Query: 9 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
N++R+I NA R F + + S+L P ++ +E +L R V+ D+
Sbjct: 978 NVKRVIQNALRQFQIDKGLPSNLHPKDVIEKIEAMLRRLVVVVGDD-------------- 1023
Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
LS AQ NAT L+++ +R+ LASK VL E+RL+ A W+L EIE
Sbjct: 1024 -------------LLSVEAQNNATTLYRILIRSYLASKRVLREYRLSEAALIWVLGEIEA 1070
Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
RF A GEM G AAQSIGEPATQMTLNTFHYA
Sbjct: 1071 RFHHAKVSPGEMAGVLAAQSIGEPATQMTLNTFHYA 1106
[220][TOP]
>UniRef100_Q9BNQ3 RNA polymerase II largest subunit (Fragment) n=1 Tax=Peripatus sp.
Per2 RepID=Q9BNQ3_9BILA
Length = 300
Score = 109 bits (273), Expect = 8e-23
Identities = 64/144 (44%), Positives = 81/144 (56%)
Frame = +3
Query: 45 FDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEAL 224
F + SDL+P +++ GV L R ++ ++
Sbjct: 2 FHINLRTPSDLNPLRVIEGVRDLSKRLIIVPGED-------------------------- 35
Query: 225 KELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEM 404
+S+ AQ NATLL + VRA+L SK V EH+L+ +AF WLL EIE RF QA GEM
Sbjct: 36 -RISKQAQENATLLMNILVRATLCSKRVTKEHKLSTEAFEWLLGEIETRFAQAQGQPGEM 94
Query: 405 VGATAAQSIGEPATQMTLNTFHYA 476
VGA AAQS+GEPATQMTLNTFHYA
Sbjct: 95 VGALAAQSLGEPATQMTLNTFHYA 118
[221][TOP]
>UniRef100_B4YT39 RNA polymerase II large subunit (Fragment) n=1 Tax=Pterostichus
melanarius RepID=B4YT39_PTEME
Length = 227
Score = 109 bits (273), Expect = 8e-23
Identities = 64/146 (43%), Positives = 86/146 (58%)
Frame = +3
Query: 9 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
N++R+IWN ++IF + + +DLSP ++++GV LL + V+ + ED
Sbjct: 109 NLQRMIWNVQKIFHINKRSPTDLSPIRVIQGVRDLLKKC-VIVAGED------------- 154
Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
LS+ A NATLLFQ VRA+L +K V E RL+ +AF WL+ EIE
Sbjct: 155 -------------RLSKLANENATLLFQCLVRATLCTKCVSEEFRLSTEAFEWLIGEIET 201
Query: 369 RFQQALAPAGEMVGATAAQSIGEPAT 446
RFQQA GEMVGA AAQS+GEPAT
Sbjct: 202 RFQQAQCAPGEMVGALAAQSLGEPAT 227
[222][TOP]
>UniRef100_Q9HGZ5 DNA-directed RNA polymerase n=2 Tax=Aspergillus RepID=Q9HGZ5_ASPOR
Length = 1748
Score = 109 bits (273), Expect = 8e-23
Identities = 61/157 (38%), Positives = 94/157 (59%)
Frame = +3
Query: 6 VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLP 185
+N++R++ A+ F +R+ SDL P++++ V+ LL R ++ D+
Sbjct: 978 INVQRILEMARTTFRIREGTISDLHPAEVIPQVQALLDRLLIVRGDDP------------ 1025
Query: 186 PDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIE 365
+S+ AQ NATLLF+ +R+ LA + +++E+ + + AF ++ IE
Sbjct: 1026 ---------------ISQEAQENATLLFKAQLRSRLAFRRLVTEYSMNKLAFQHVIGAIE 1070
Query: 366 NRFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
+RF +A APAGEMVG AAQSIGEPATQMTLNTFH+A
Sbjct: 1071 SRFAKANAPAGEMVGVLAAQSIGEPATQMTLNTFHFA 1107
[223][TOP]
>UniRef100_C5GKA7 DNA-directed RNA polymerase n=2 Tax=Ajellomyces dermatitidis
RepID=C5GKA7_AJEDR
Length = 1746
Score = 109 bits (273), Expect = 8e-23
Identities = 66/157 (42%), Positives = 94/157 (59%)
Frame = +3
Query: 6 VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLP 185
+N++R++ +AK IF +R+ SDL P++++ + LL R V+ D D I+RE
Sbjct: 981 INVQRILESAKTIFRIREGAISDLHPAEVIPQIRALLDRLIVVRGD-----DVISRE--- 1032
Query: 186 PDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIE 365
AQ +ATLLF+ +R+ LA + ++ E+ L R AF +L IE
Sbjct: 1033 -------------------AQESATLLFKAQLRSRLAFRRLVVEYSLNRLAFQHVLGAIE 1073
Query: 366 NRFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
+RF +A+A GEMVG AAQSIGEPATQMTLNTFH+A
Sbjct: 1074 SRFSKAMANPGEMVGVLAAQSIGEPATQMTLNTFHFA 1110
[224][TOP]
>UniRef100_A6QYA7 DNA-directed RNA polymerase n=1 Tax=Ajellomyces capsulatus NAm1
RepID=A6QYA7_AJECN
Length = 1747
Score = 109 bits (273), Expect = 8e-23
Identities = 66/157 (42%), Positives = 94/157 (59%)
Frame = +3
Query: 6 VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLP 185
+N++R++ +AK IF +R+ SDL P++++ V +L R V+ D D I+RE
Sbjct: 981 INVQRILESAKTIFRIREGAISDLHPAEVIPQVRAMLERLVVVRGD-----DVISRE--- 1032
Query: 186 PDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIE 365
AQ +ATLLF+ +R+ LA + ++ E+ L R AF +L IE
Sbjct: 1033 -------------------AQESATLLFKAQLRSRLAFRRLVVEYSLNRLAFQHVLGAIE 1073
Query: 366 NRFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
+RF +A+A GEMVG AAQSIGEPATQMTLNTFH+A
Sbjct: 1074 SRFSKAMANPGEMVGVLAAQSIGEPATQMTLNTFHFA 1110
[225][TOP]
>UniRef100_B4YT43 DNA-directed RNA polymerase (Fragment) n=1 Tax=Laccophilus pictus
RepID=B4YT43_9DYTI
Length = 562
Score = 109 bits (272), Expect = 1e-22
Identities = 62/146 (42%), Positives = 85/146 (58%)
Frame = +3
Query: 9 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
N++R+IWN ++IF + + +DLSP ++++GV LL R ++ +
Sbjct: 444 NLQRMIWNVQKIFHINKRAPTDLSPLRVIQGVRELLQRCIIVAGTD-------------- 489
Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
LS A NATLLFQ VR++L +K V E+RL+ +AF WL+ EIE
Sbjct: 490 -------------RLSTLANDNATLLFQCLVRSTLCTKYVSEEYRLSTEAFEWLIGEIET 536
Query: 369 RFQQALAPAGEMVGATAAQSIGEPAT 446
RFQQA A GEMVGA AAQS+GEPAT
Sbjct: 537 RFQQAQANPGEMVGALAAQSLGEPAT 562
[226][TOP]
>UniRef100_B4YT37 DNA-directed RNA polymerase (Fragment) n=1 Tax=Scaphinotus petersi
RepID=B4YT37_9CARA
Length = 369
Score = 109 bits (272), Expect = 1e-22
Identities = 62/146 (42%), Positives = 84/146 (57%)
Frame = +3
Query: 9 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
N++R+IWN ++IF + + +DLSP ++++GV LL + ++ +
Sbjct: 251 NLQRMIWNVQKIFHINKRAPTDLSPIRVIQGVRDLLQKCVIVAGKD-------------- 296
Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
LSE A NATLLFQ VRA+L +K V E RL+ +AF WL+ EIE
Sbjct: 297 -------------RLSEQANENATLLFQCLVRATLCTKCVSEEFRLSSEAFEWLIGEIET 343
Query: 369 RFQQALAPAGEMVGATAAQSIGEPAT 446
RFQQA GEMVGA AAQS+GEPAT
Sbjct: 344 RFQQAQCAPGEMVGALAAQSLGEPAT 369
[227][TOP]
>UniRef100_Q5ACI7 DNA-directed RNA polymerase n=1 Tax=Candida albicans
RepID=Q5ACI7_CANAL
Length = 1728
Score = 109 bits (272), Expect = 1e-22
Identities = 67/157 (42%), Positives = 90/157 (57%)
Frame = +3
Query: 6 VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLP 185
VN+ R+I NA++IF + SDL +IV GV+ L + V+ D
Sbjct: 959 VNLRRIIQNAQQIFHNGRYRASDLRLEEIVLGVKELCMKLLVVRGD-------------- 1004
Query: 186 PDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIE 365
L + AQ NATLLFQ +R+ LA++ V+ E +L R +F W++ EIE
Sbjct: 1005 -------------TPLVKEAQENATLLFQCLLRSRLAARRVIEEFKLNRASFEWVMGEIE 1051
Query: 366 NRFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
+FQ+++ GEMVG AAQSIGEPATQMTLNTFHYA
Sbjct: 1052 TQFQKSIVHPGEMVGVVAAQSIGEPATQMTLNTFHYA 1088
[228][TOP]
>UniRef100_C9SR21 DNA-directed RNA polymerase II subunit RPB1 n=1 Tax=Verticillium
albo-atrum VaMs.102 RepID=C9SR21_9PEZI
Length = 1756
Score = 109 bits (272), Expect = 1e-22
Identities = 66/157 (42%), Positives = 90/157 (57%)
Frame = +3
Query: 6 VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLP 185
+NI R++ AK++F+V+ RSDL+P ++ V +L R V+
Sbjct: 973 LNIVRIMETAKKLFNVQDFQRSDLTPQDVIPAVSSMLDRMTVVRG--------------- 1017
Query: 186 PDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIE 365
PDG LS+ A NAT+LF+ H+R+ LA K V RL + AF+ +L E+E
Sbjct: 1018 PDG------------LSKEADYNATILFKAHIRSRLAFKGVACLQRLNKLAFSHVLGELE 1065
Query: 366 NRFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
R+ +A GEMVG AAQSIGEPATQMTLNTFH+A
Sbjct: 1066 GRWAKASISPGEMVGVLAAQSIGEPATQMTLNTFHFA 1102
[229][TOP]
>UniRef100_C4YN85 DNA-directed RNA polymerase n=1 Tax=Candida albicans
RepID=C4YN85_CANAL
Length = 1742
Score = 109 bits (272), Expect = 1e-22
Identities = 67/157 (42%), Positives = 90/157 (57%)
Frame = +3
Query: 6 VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLP 185
VN+ R+I NA++IF + SDL +IV GV+ L + V+ D
Sbjct: 959 VNLRRIIQNAQQIFHNGRYRASDLRLEEIVLGVKELCMKLLVVRGD-------------- 1004
Query: 186 PDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIE 365
L + AQ NATLLFQ +R+ LA++ V+ E +L R +F W++ EIE
Sbjct: 1005 -------------TPLVKEAQENATLLFQCLLRSRLAARRVIEEFKLNRASFEWVMGEIE 1051
Query: 366 NRFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
+FQ+++ GEMVG AAQSIGEPATQMTLNTFHYA
Sbjct: 1052 TQFQKSIVHPGEMVGVVAAQSIGEPATQMTLNTFHYA 1088
[230][TOP]
>UniRef100_C4Y5N4 DNA-directed RNA polymerase n=1 Tax=Clavispora lusitaniae ATCC 42720
RepID=C4Y5N4_CLAL4
Length = 1402
Score = 109 bits (272), Expect = 1e-22
Identities = 65/157 (41%), Positives = 90/157 (57%)
Frame = +3
Query: 6 VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLP 185
VN+ R+I NA++IF + SDL +IV GV+ L + V+
Sbjct: 918 VNLRRIIQNAQQIFHSGRQRASDLKLDEIVEGVKALCSKLLVIRGKS------------- 964
Query: 186 PDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIE 365
L++ AQ +ATLLFQ VR+ LA++ ++ E +L+R +F W+ EIE
Sbjct: 965 --------------RLAKEAQEDATLLFQCLVRSRLAARRIIEEFKLSRISFEWVCGEIE 1010
Query: 366 NRFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
+FQ+++ GEMVG AAQSIGEPATQMTLNTFHYA
Sbjct: 1011 TQFQKSIVHPGEMVGVIAAQSIGEPATQMTLNTFHYA 1047
[231][TOP]
>UniRef100_A5E6J4 DNA-directed RNA polymerase n=1 Tax=Lodderomyces elongisporus
RepID=A5E6J4_LODEL
Length = 1745
Score = 109 bits (272), Expect = 1e-22
Identities = 68/157 (43%), Positives = 88/157 (56%)
Frame = +3
Query: 6 VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLP 185
VN+ R+I NA++IF ++ SDL +IV V L + V+ D
Sbjct: 953 VNLRRIIQNAQQIFHSGRDKPSDLRLDEIVESVRDLCTKFLVVRGD-------------- 998
Query: 186 PDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIE 365
L + AQ NATLLFQ VR+ LAS+ V+ E +L + +F W L EIE
Sbjct: 999 -------------TPLMKEAQENATLLFQCLVRSRLASRRVIEEFKLNKASFEWALGEIE 1045
Query: 366 NRFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
+FQ+++ GEMVG AAQSIGEPATQMTLNTFHYA
Sbjct: 1046 TQFQKSVVHPGEMVGVVAAQSIGEPATQMTLNTFHYA 1082
[232][TOP]
>UniRef100_C4QEL8 DNA-directed RNA polymerase n=1 Tax=Schistosoma mansoni
RepID=C4QEL8_SCHMA
Length = 1785
Score = 108 bits (271), Expect = 1e-22
Identities = 64/156 (41%), Positives = 88/156 (56%)
Frame = +3
Query: 9 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
NI RL+ NA++IF++ ++++ P ++V V R V+ D+
Sbjct: 872 NINRLVMNAQKIFEIDPLSKTNIHPRQVVEMVRETCKRLIVVPGDD-------------- 917
Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
LS+ A NATLL +RASL +K V+ ++RL+ +A W+L E+
Sbjct: 918 -------------RLSKEANANATLLLSSLIRASLCAKKVIIDYRLSYEALDWVLGEVRA 964
Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
RFQQA GEMVGA AAQS+GEPATQMTLNTFHYA
Sbjct: 965 RFQQAHIHPGEMVGALAAQSLGEPATQMTLNTFHYA 1000
[233][TOP]
>UniRef100_B9WN64 DNA-directed RNA polymerase n=1 Tax=Candida dubliniensis CD36
RepID=B9WN64_CANDC
Length = 1735
Score = 108 bits (271), Expect = 1e-22
Identities = 67/157 (42%), Positives = 89/157 (56%)
Frame = +3
Query: 6 VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLP 185
VN+ R+I NA++IF + SDL +I+ GV L + V+ D
Sbjct: 959 VNLRRIIQNAQQIFHNGRYRASDLRLEEIIFGVRELCKKLLVVRGDTP------------ 1006
Query: 186 PDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIE 365
L + AQ NATLLFQ +R+ LA++ V+ E +L R +F W+L EIE
Sbjct: 1007 ---------------LVKEAQENATLLFQCLLRSRLAARRVIEEFKLNRVSFEWVLGEIE 1051
Query: 366 NRFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
+FQ+++ GEMVG AAQSIGEPATQMTLNTFHYA
Sbjct: 1052 TQFQKSIVHPGEMVGVVAAQSIGEPATQMTLNTFHYA 1088
[234][TOP]
>UniRef100_B3FA52 RNA polymerase II largest subunit (Fragment) n=1 Tax=Bembidion
levettei RepID=B3FA52_9CARA
Length = 226
Score = 108 bits (270), Expect = 2e-22
Identities = 63/146 (43%), Positives = 86/146 (58%)
Frame = +3
Query: 9 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
N++R+IWN ++IF + + +DLSP ++++GV LL + V+ + ED
Sbjct: 108 NLQRMIWNVQKIFHINKRSPTDLSPIRVIQGVRDLLQKC-VIVAGED------------- 153
Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
LS+ NATLLFQ VRA+L +K V E RL+ +AF WL+ EIE
Sbjct: 154 -------------RLSKQXNENATLLFQCLVRATLCTKCVSEEFRLSTEAFEWLIGEIET 200
Query: 369 RFQQALAPAGEMVGATAAQSIGEPAT 446
RFQQA + GEMVGA AAQS+GEPAT
Sbjct: 201 RFQQAQSAPGEMVGALAAQSLGEPAT 226
[235][TOP]
>UniRef100_B3FA46 RNA polymerase II largest subunit (Fragment) n=1 Tax=Bembidion
bifossulatum RepID=B3FA46_9CARA
Length = 227
Score = 108 bits (270), Expect = 2e-22
Identities = 63/146 (43%), Positives = 86/146 (58%)
Frame = +3
Query: 9 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
N++R+IWN ++IF + + +DLSP ++++GV LL + V+ + ED
Sbjct: 109 NLQRMIWNVQKIFHINKRSPTDLSPIRVIQGVRDLLQKC-VIVAGED------------- 154
Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
LS+ NATLLFQ VRA+L +K V E RL+ +AF WL+ EIE
Sbjct: 155 -------------RLSKQXNENATLLFQCLVRATLCTKCVSEEFRLSTEAFEWLIGEIET 201
Query: 369 RFQQALAPAGEMVGATAAQSIGEPAT 446
RFQQA + GEMVGA AAQS+GEPAT
Sbjct: 202 RFQQAQSAPGEMVGALAAQSLGEPAT 227
[236][TOP]
>UniRef100_C4JY44 DNA-directed RNA polymerase n=1 Tax=Uncinocarpus reesii 1704
RepID=C4JY44_UNCRE
Length = 1747
Score = 108 bits (270), Expect = 2e-22
Identities = 66/157 (42%), Positives = 93/157 (59%)
Frame = +3
Query: 6 VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLP 185
+N++R++ +AK F +R+ SDL P++++ V+ LL R V+ D D I++E
Sbjct: 933 INVQRILESAKTTFRIREGTISDLHPAEVIPQVQALLERLVVVRGD-----DIISKE--- 984
Query: 186 PDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIE 365
AQ NATLLF+ +R+ LA K ++ E+ L + AF +L IE
Sbjct: 985 -------------------AQENATLLFKAQLRSRLAFKRLVVEYSLNKLAFQHVLGAIE 1025
Query: 366 NRFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
+RF +A A GEMVG AAQSIGEPATQMTLNTFH+A
Sbjct: 1026 SRFAKAAANPGEMVGVLAAQSIGEPATQMTLNTFHFA 1062
[237][TOP]
>UniRef100_Q9BNA4 RNA polymerase II largest subunit (Fragment) n=1 Tax=solifugid
'Sol' RepID=Q9BNA4_9ARAC
Length = 256
Score = 108 bits (269), Expect = 2e-22
Identities = 64/145 (44%), Positives = 84/145 (57%)
Frame = +3
Query: 42 IFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEA 221
IF V ++DLSP + ++GVE L+ + ++ ++
Sbjct: 1 IFHVNTRAQTDLSPLRTIKGVEELVKKLIIVPGED------------------------- 35
Query: 222 LKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGE 401
LS A NATLLF+ +R++L +K V E RL+ +AF WLL EIE +FQQA GE
Sbjct: 36 --RLSIQANDNATLLFRALLRSTLCAKRVSEEFRLSTEAFDWLLEEIETKFQQAQGQPGE 93
Query: 402 MVGATAAQSIGEPATQMTLNTFHYA 476
MVGA AAQS+GEPATQMTLNTFHYA
Sbjct: 94 MVGALAAQSLGEPATQMTLNTFHYA 118
[238][TOP]
>UniRef100_B3FA45 RNA polymerase II largest subunit (Fragment) n=1 Tax=Bembidion
balli RepID=B3FA45_9CARA
Length = 220
Score = 107 bits (268), Expect = 3e-22
Identities = 63/146 (43%), Positives = 86/146 (58%)
Frame = +3
Query: 9 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
N++R+IWN ++IF + + +DLSP ++++GV LL + V+ + ED
Sbjct: 102 NLQRMIWNVQKIFHINKRSPTDLSPIRVIQGVRDLLQKC-VIVAGED------------- 147
Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
LS+ A NATLLFQ VRA+L +K V E RL+ +A WL+ EIE
Sbjct: 148 -------------RLSKQANENATLLFQCLVRATLCTKCVSEEFRLSTEAXEWLIGEIET 194
Query: 369 RFQQALAPAGEMVGATAAQSIGEPAT 446
RFQQA + GEMVGA AAQS+GEPAT
Sbjct: 195 RFQQAQSAPGEMVGALAAQSLGEPAT 220
[239][TOP]
>UniRef100_B3RM26 DNA-directed RNA polymerase n=1 Tax=Trichoplax adhaerens
RepID=B3RM26_TRIAD
Length = 1784
Score = 107 bits (267), Expect = 4e-22
Identities = 68/157 (43%), Positives = 86/157 (54%)
Frame = +3
Query: 6 VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLP 185
VN+ RLIWNA++IF V SDL P K++ V L R V+ ED
Sbjct: 969 VNLNRLIWNAQKIFHVDPRKSSDLHPMKVIDDV-CELSRKLVIVHGED------------ 1015
Query: 186 PDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIE 365
+S+ AQ NATLLF + +R+ L+SK V E+ LT +AF WL+ E++
Sbjct: 1016 --------------RISKQAQENATLLFNILLRSVLSSKRVTEEYHLTSEAFDWLIGEVQ 1061
Query: 366 NRFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
GEMVG AAQS+GEPATQMTLNTFHYA
Sbjct: 1062 ---------PGEMVGPLAAQSLGEPATQMTLNTFHYA 1089
[240][TOP]
>UniRef100_Q2HDK0 DNA-directed RNA polymerase n=1 Tax=Chaetomium globosum
RepID=Q2HDK0_CHAGB
Length = 1756
Score = 107 bits (267), Expect = 4e-22
Identities = 61/157 (38%), Positives = 91/157 (57%)
Frame = +3
Query: 6 VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLP 185
+NI R+I AK++F V + RSDL+P+ ++ V+ LL R V+ +
Sbjct: 975 LNIARIIETAKKLFKVDDSQRSDLTPNDVIPVVKALLERMIVVRGSDP------------ 1022
Query: 186 PDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIE 365
+S+ A N+T+LF++ +R+ LA K + E R+ + AF +L E+E
Sbjct: 1023 ---------------ISKEADYNSTILFKIQLRSRLAYKRLAVEQRINKLAFEHILGELE 1067
Query: 366 NRFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
NR+ +++ GEMVG AAQSIGEPATQMTLNTFH+A
Sbjct: 1068 NRWSRSMVAPGEMVGVLAAQSIGEPATQMTLNTFHFA 1104
[241][TOP]
>UniRef100_B7G9I2 DNA-directed RNA polymerase (Fragment) n=1 Tax=Phaeodactylum
tricornutum CCAP 1055/1 RepID=B7G9I2_PHATR
Length = 1706
Score = 107 bits (266), Expect = 5e-22
Identities = 62/156 (39%), Positives = 88/156 (56%)
Frame = +3
Query: 9 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
N+ R+I NA R F + ++ +DL P+++++ V LL R V+ ++ V+A
Sbjct: 916 NVRRVIHNAMRQFRIDKSKPTDLHPTEVIQIVNNLLERLIVVVGNDPLSVEA-------- 967
Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
Q NAT L+++ +R L+SK VL + RL++ A W++ EIE
Sbjct: 968 -------------------QSNATTLYRILIRTMLSSKRVLKDWRLSKAALNWVVGEIET 1008
Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
RF A+ GEM G AAQSIGEPATQMTLNTFHYA
Sbjct: 1009 RFNIAMVNPGEMAGVLAAQSIGEPATQMTLNTFHYA 1044
[242][TOP]
>UniRef100_Q9BN99 RNA polymerase II largest subunit (Fragment) n=1 Tax=Stenochrus
portoricensis RepID=Q9BN99_9ARAC
Length = 256
Score = 107 bits (266), Expect = 5e-22
Identities = 65/145 (44%), Positives = 82/145 (56%)
Frame = +3
Query: 42 IFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEA 221
IF V +DLSP +++ GVE L+ + ++ ++
Sbjct: 1 IFRVNARSPTDLSPLRVMHGVEDLVKKLIIVPGED------------------------- 35
Query: 222 LKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGE 401
LS A NATLLF+ +R+ L +K V E RL+ +AF WLL EIE RFQQA GE
Sbjct: 36 --RLSIQANDNATLLFRALLRSVLCTKRVAEEFRLSSEAFEWLLGEIETRFQQAQVQPGE 93
Query: 402 MVGATAAQSIGEPATQMTLNTFHYA 476
MVGA AAQS+GEPATQMTLNTFHYA
Sbjct: 94 MVGALAAQSLGEPATQMTLNTFHYA 118
[243][TOP]
>UniRef100_Q7SDN0 DNA-directed RNA polymerase n=1 Tax=Neurospora crassa
RepID=Q7SDN0_NEUCR
Length = 1752
Score = 106 bits (265), Expect = 7e-22
Identities = 61/157 (38%), Positives = 90/157 (57%)
Frame = +3
Query: 6 VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLP 185
+NI R+I AK++F V + RSDL+P ++ V+ +L R V+ D+
Sbjct: 976 LNIIRIIDTAKKLFKVDETARSDLTPKDVIPAVKAMLDRMIVVRGDD------------- 1022
Query: 186 PDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIE 365
+S+ A NAT+LF+ +R+ LA K + + R+ + AF +L E+E
Sbjct: 1023 --------------PISKEADYNATILFKAQLRSRLAFKRLAVQDRINKLAFNHILGELE 1068
Query: 366 NRFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
NR+ +++ GEMVG AAQSIGEPATQMTLNTFH+A
Sbjct: 1069 NRWSRSMVSPGEMVGVLAAQSIGEPATQMTLNTFHFA 1105
[244][TOP]
>UniRef100_Q1E2G9 DNA-directed RNA polymerase n=1 Tax=Coccidioides immitis
RepID=Q1E2G9_COCIM
Length = 1750
Score = 106 bits (265), Expect = 7e-22
Identities = 66/157 (42%), Positives = 92/157 (58%)
Frame = +3
Query: 6 VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLP 185
+N++R++ +AK F +R+ SDL P+ ++ V+ LL R V+ D D I++E
Sbjct: 981 INVQRILESAKTTFRIREGTISDLHPADVIPQVQGLLDRLVVVRGD-----DVISKE--- 1032
Query: 186 PDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIE 365
AQ NATLLF+ +R+ LA K ++ E+ L + AF +L IE
Sbjct: 1033 -------------------AQENATLLFKAQLRSRLAFKRLVVEYSLNKLAFQHVLGAIE 1073
Query: 366 NRFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
+RF +A A GEMVG AAQSIGEPATQMTLNTFH+A
Sbjct: 1074 SRFAKAAANPGEMVGVLAAQSIGEPATQMTLNTFHFA 1110
[245][TOP]
>UniRef100_C5PAJ4 DNA-directed RNA polymerase n=1 Tax=Coccidioides posadasii C735 delta
SOWgp RepID=C5PAJ4_COCP7
Length = 1746
Score = 106 bits (265), Expect = 7e-22
Identities = 66/157 (42%), Positives = 92/157 (58%)
Frame = +3
Query: 6 VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLP 185
+N++R++ +AK F +R+ SDL P+ ++ V+ LL R V+ D D I++E
Sbjct: 981 INVQRILESAKTTFRIREGTISDLHPADVIPQVQGLLDRLVVVRGD-----DVISKE--- 1032
Query: 186 PDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIE 365
AQ NATLLF+ +R+ LA K ++ E+ L + AF +L IE
Sbjct: 1033 -------------------AQENATLLFKAQLRSRLAFKRLVVEYSLNKLAFQHVLGAIE 1073
Query: 366 NRFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
+RF +A A GEMVG AAQSIGEPATQMTLNTFH+A
Sbjct: 1074 SRFAKAAANPGEMVGVLAAQSIGEPATQMTLNTFHFA 1110
[246][TOP]
>UniRef100_C5FCL2 DNA-directed RNA polymerase n=1 Tax=Microsporum canis CBS 113480
RepID=C5FCL2_NANOT
Length = 1748
Score = 106 bits (265), Expect = 7e-22
Identities = 66/157 (42%), Positives = 89/157 (56%)
Frame = +3
Query: 6 VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLP 185
+NI+R++ +AK F +R SDL P+++V V LL R V+ D+
Sbjct: 980 INIQRILESAKTTFRIRDGTISDLHPAEVVPQVRQLLDRLLVVRGDD------------- 1026
Query: 186 PDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIE 365
LS AQ NATLLF+ +R+ LA + ++ E+ L + AF +L IE
Sbjct: 1027 --------------PLSREAQENATLLFKAQLRSRLAFRRLVVEYSLNKLAFQHVLGAIE 1072
Query: 366 NRFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
+RF +A A GEMVG AAQSIGEPATQMTLNTFH+A
Sbjct: 1073 SRFGKAAANPGEMVGVLAAQSIGEPATQMTLNTFHFA 1109
[247][TOP]
>UniRef100_Q0D054 DNA-directed RNA polymerase n=1 Tax=Aspergillus terreus NIH2624
RepID=Q0D054_ASPTN
Length = 1742
Score = 106 bits (264), Expect = 9e-22
Identities = 60/157 (38%), Positives = 91/157 (57%)
Frame = +3
Query: 6 VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLP 185
+N++R++ A+ F +R+ SDL P++++ V+ LL R +++ D+ V+
Sbjct: 979 INVQRILETARSTFRIREGTISDLHPAEVIPQVQSLLDRLKIVRGDDIISVE-------- 1030
Query: 186 PDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIE 365
AQ NATLLF+ +R+ LA + +++E+ + + AF +L IE
Sbjct: 1031 -------------------AQENATLLFKAQLRSRLAFRRLVTEYSMNKLAFQHVLGAIE 1071
Query: 366 NRFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
RF +A A GEMVG AAQSIGEPATQMTLNTFH+A
Sbjct: 1072 TRFAKAAASPGEMVGVLAAQSIGEPATQMTLNTFHFA 1108
[248][TOP]
>UniRef100_A1CNZ4 DNA-directed RNA polymerase n=1 Tax=Aspergillus clavatus
RepID=A1CNZ4_ASPCL
Length = 1765
Score = 106 bits (264), Expect = 9e-22
Identities = 62/157 (39%), Positives = 91/157 (57%)
Frame = +3
Query: 6 VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLP 185
+N++R++ A+ F +R+ SDL P+++V V+ LL R V+ D+
Sbjct: 980 INVQRILETARSTFRIREGAISDLHPAEVVPQVQSLLDRLLVVRGDDP------------ 1027
Query: 186 PDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIE 365
+S AQ NATLLF+ +R+ LA + +++E+ + + AF +L IE
Sbjct: 1028 ---------------ISHEAQENATLLFKAQLRSRLAFRRLVTEYSMNKLAFQHVLGAIE 1072
Query: 366 NRFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
+RF +A A GEMVG AAQSIGEPATQMTLNTFH+A
Sbjct: 1073 SRFAKAAASPGEMVGVLAAQSIGEPATQMTLNTFHFA 1109
[249][TOP]
>UniRef100_A1YIA7 DNA-directed RNA polymerase (Fragment) n=1 Tax=Pichia kudriavzevii
RepID=A1YIA7_ISSOR
Length = 1647
Score = 105 bits (263), Expect = 1e-21
Identities = 64/157 (40%), Positives = 90/157 (57%)
Frame = +3
Query: 6 VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLP 185
VN+ R++ NA++IF V + SDL+ +IV+ V+ L + V+ D + ARE
Sbjct: 882 VNVRRIVQNAQQIFHVDRYKASDLTIEEIVKSVQELCKKFTVVRGDGGCLTE--ARE--- 936
Query: 186 PDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIE 365
N+TLLFQ +R+ LA++ VL E++L + AF W++ I
Sbjct: 937 ----------------------NSTLLFQCLIRSKLATRRVLEEYKLNKDAFEWVVGTIA 974
Query: 366 NRFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
+F ++L GEMVG AAQSIGEPATQMTLNTFHYA
Sbjct: 975 QQFARSLVNPGEMVGVVAAQSIGEPATQMTLNTFHYA 1011
[250][TOP]
>UniRef100_A9QMQ4 RNA polymerase 2 (Fragment) n=1 Tax=Choriorhabditis dudichi
RepID=A9QMQ4_9BILA
Length = 380
Score = 105 bits (262), Expect = 2e-21
Identities = 51/78 (65%), Positives = 62/78 (79%)
Frame = +3
Query: 243 AQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAA 422
AQ NATLL + +R++L SK + + H+L +AF WLL E+E RFQQA+A GEMVGA AA
Sbjct: 1 AQYNATLLMNILIRSTLCSKKMATTHKLNAEAFEWLLGEVETRFQQAIAQPGEMVGALAA 60
Query: 423 QSIGEPATQMTLNTFHYA 476
QS+GEPATQMTLNTFHYA
Sbjct: 61 QSLGEPATQMTLNTFHYA 78