[UP]
[1][TOP]
>UniRef100_A9SJE5 DNA-directed RNA polymerase n=1 Tax=Physcomitrella patens subsp.
patens RepID=A9SJE5_PHYPA
Length = 1185
Score = 199 bits (506), Expect = 1e-49
Identities = 101/179 (56%), Positives = 125/179 (69%)
Frame = +1
Query: 7 DADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGR 186
+ +I+ EDAW VI+AYF+E GLVRQQL S++EF+ TMQ +VDES DI + PE Q+ PGR
Sbjct: 12 EEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESSDIEIRPESQHNPGR 71
Query: 187 DAPDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRL 366
A + I FGQ+ +SKP TE +GE TL+P ARLRNLTYS PLY DVTK R
Sbjct: 72 QAEIGDVTYKINFGQIYLSKPMMTEADGETATLWPKAARLRNLTYSAPLYVDVTKFVTR- 130
Query: 367 VDPETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
E GEEE E+ KV+IG+VP+MLRSR+C L ++ +L LGEC DQGGYFIIN
Sbjct: 131 -KTEDGEEETEQEDLSKVYIGKVPIMLRSRYCTLFENSDKDLTELGECPYDQGGYFIIN 188
[2][TOP]
>UniRef100_Q1L5Y8 DNA-directed RNA polymerase n=1 Tax=Antirrhinum majus
RepID=Q1L5Y8_ANTMA
Length = 1200
Score = 195 bits (496), Expect = 2e-48
Identities = 98/179 (54%), Positives = 126/179 (70%)
Frame = +1
Query: 7 DADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGR 186
+ DIS EDAW VI+AYF+E GLVRQQL S++EF+ TMQ +VDES DI + PE Q+ PG+
Sbjct: 26 EEDISQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQ 85
Query: 187 DAPDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRL 366
T I FGQ+ +SKP TE++GE TL+P ARLRNLTYS PLY DV+K ++
Sbjct: 86 QPDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVSKRVIK- 144
Query: 367 VDPETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
GEE +++ KVFIG+VP+MLRS +C L+ +E +L LGEC +DQGGYFIIN
Sbjct: 145 -KGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPLDQGGYFIIN 202
[3][TOP]
>UniRef100_Q42877 DNA-directed RNA polymerase II subunit RPB2 n=1 Tax=Solanum
lycopersicum RepID=RPB2_SOLLC
Length = 1191
Score = 195 bits (495), Expect = 2e-48
Identities = 97/180 (53%), Positives = 127/180 (70%)
Frame = +1
Query: 4 NDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPG 183
++ +I+ EDAW VI+AYF+E GLVRQQL S++EF+ TMQ +VDES DI + PE Q+ PG
Sbjct: 16 DEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPG 75
Query: 184 RDAPDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVR 363
+ T I FGQ+ +SKP TE++GE TL+P ARLRNLTYS PLY DVTK ++
Sbjct: 76 HQSDFAETIYKINFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIK 135
Query: 364 LVDPETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
GEE +++ KVFIG+VP+MLRS +C L+ +E +L LGEC +DQGGYFIIN
Sbjct: 136 --KGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPLDQGGYFIIN 193
[4][TOP]
>UniRef100_Q1L5Y9 DNA-directed RNA polymerase n=1 Tax=Petunia x hybrida
RepID=Q1L5Y9_PETHY
Length = 1195
Score = 194 bits (494), Expect = 3e-48
Identities = 97/179 (54%), Positives = 126/179 (70%)
Frame = +1
Query: 7 DADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGR 186
+ +I+ EDAW VI+AYF+E GLVRQQL S++EF+ TMQ +VDES DI + PE Q+ PG
Sbjct: 21 EEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGH 80
Query: 187 DAPDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRL 366
+ T I FGQ+ +SKP TE++GE TL+P ARLRNLTYS PLY DVTK ++
Sbjct: 81 QSDFAETIYKINFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIK- 139
Query: 367 VDPETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
GEE +++ KVFIG+VP+MLRS +C L+ +E +L LGEC +DQGGYFIIN
Sbjct: 140 -KGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPLDQGGYFIIN 197
[5][TOP]
>UniRef100_P38420 DNA-directed RNA polymerase II subunit RPB2 n=1 Tax=Arabidopsis
thaliana RepID=RPB2_ARATH
Length = 1188
Score = 194 bits (494), Expect = 3e-48
Identities = 98/180 (54%), Positives = 125/180 (69%)
Frame = +1
Query: 4 NDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPG 183
+D +I+ EDAW VI+AYF+E GLVRQQL S++EF+ TMQ +VDES DI + PE Q+ PG
Sbjct: 17 DDEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPG 76
Query: 184 RDAPDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVR 363
+ T I FGQ+ +SKP TE++GE TL+P ARLRNLTYS PLY DVTK ++
Sbjct: 77 HQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIK 136
Query: 364 LVDPETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
GEE +++ KVFIG+VP+MLRS +C L +E +L LGEC DQGGYFIIN
Sbjct: 137 --KGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLFQNSEKDLTELGECPYDQGGYFIIN 194
[6][TOP]
>UniRef100_Q1L5B5 DNA-directed RNA polymerase n=1 Tax=Rhododendron macrophyllum
RepID=Q1L5B5_RHOMC
Length = 1191
Score = 194 bits (492), Expect = 5e-48
Identities = 97/179 (54%), Positives = 125/179 (69%)
Frame = +1
Query: 7 DADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGR 186
+ +I+ EDAW VI+AYF+E GLVRQQL S++EF+ TMQ +VDES DI + PE Q+ PG
Sbjct: 17 EEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGH 76
Query: 187 DAPDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRL 366
+ T I FGQ+ +SKP TE++GE TL+P ARLRNLTYS PLY DVTK ++
Sbjct: 77 QSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIK- 135
Query: 367 VDPETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
GEE +++ KVFIG+VP+MLRS +C L+ +E +L LGEC DQGGYFIIN
Sbjct: 136 -KGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIIN 193
[7][TOP]
>UniRef100_B9RZ91 DNA-directed RNA polymerase n=1 Tax=Ricinus communis
RepID=B9RZ91_RICCO
Length = 1194
Score = 194 bits (492), Expect = 5e-48
Identities = 97/180 (53%), Positives = 126/180 (70%)
Frame = +1
Query: 4 NDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPG 183
++ +I+ EDAW VI+AYF+E GLVRQQL S++EF+ TMQ +VDES DI + PE Q+ PG
Sbjct: 19 DEDEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPG 78
Query: 184 RDAPDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVR 363
+ T I FGQ+ +SKP TE++GE TL+P ARLRNLTYS PLY DVTK ++
Sbjct: 79 HQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIK 138
Query: 364 LVDPETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
GEE +++ KVFIG+VP+MLRS +C L+ +E +L LGEC DQGGYFIIN
Sbjct: 139 --KGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIIN 196
[8][TOP]
>UniRef100_A7PJ31 DNA-directed RNA polymerase n=1 Tax=Vitis vinifera
RepID=A7PJ31_VITVI
Length = 1220
Score = 192 bits (489), Expect = 1e-47
Identities = 98/180 (54%), Positives = 126/180 (70%)
Frame = +1
Query: 4 NDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPG 183
+D +I+ EDAW VI+AYF+E GLVRQQL S++EF+ TMQ +VDES DI + PE Q+ PG
Sbjct: 18 DDEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPG 77
Query: 184 RDAPDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVR 363
R + T I FGQ+ +SKP TE++GE TL+P ARLRNLTYS PLY DVTK ++
Sbjct: 78 RQSDFLETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRIIK 137
Query: 364 LVDPETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
EE ++E KVFIG+VP+MLRS +C ++ +E +L LGEC DQGGYFIIN
Sbjct: 138 --KGHDLEEVTETQEFTKVFIGKVPIMLRSSYCTVYQNSEKDLTELGECPYDQGGYFIIN 195
[9][TOP]
>UniRef100_A5C1N0 DNA-directed RNA polymerase n=2 Tax=Vitis RepID=A5C1N0_VITVI
Length = 1193
Score = 192 bits (489), Expect = 1e-47
Identities = 98/180 (54%), Positives = 126/180 (70%)
Frame = +1
Query: 4 NDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPG 183
+D +I+ EDAW VI+AYF+E GLVRQQL S++EF+ TMQ +VDES DI + PE Q+ PG
Sbjct: 18 DDEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPG 77
Query: 184 RDAPDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVR 363
R + T I FGQ+ +SKP TE++GE TL+P ARLRNLTYS PLY DVTK ++
Sbjct: 78 RQSDFLETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRIIK 137
Query: 364 LVDPETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
EE ++E KVFIG+VP+MLRS +C ++ +E +L LGEC DQGGYFIIN
Sbjct: 138 --KGHDLEEVTETQEFTKVFIGKVPIMLRSSYCTVYQNSEKDLTELGECPYDQGGYFIIN 195
[10][TOP]
>UniRef100_Q1L5Z3 DNA-directed RNA polymerase n=1 Tax=Antirrhinum majus
RepID=Q1L5Z3_ANTMA
Length = 1198
Score = 191 bits (484), Expect = 4e-47
Identities = 98/179 (54%), Positives = 126/179 (70%)
Frame = +1
Query: 7 DADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGR 186
D DIS EDAW VI++YF+E GLVRQQL S++EF+ TMQ +VDES +I + PE Q+ PG
Sbjct: 26 DEDISQEDAWTVISSYFEEKGLVRQQLDSFDEFIQNTMQEIVDESSNIEIRPESQHNPGG 85
Query: 187 DAPDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRL 366
++ I FGQ+ +SKP TE++GE TL+P ARLRNLTYS+PLY DVTK V+
Sbjct: 86 NSDFAEAMYRISFGQIYLSKPMMTESDGETNTLFPKAARLRNLTYSSPLYVDVTKRVVK- 144
Query: 367 VDPETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
EE ++E KVFIG+VP+MLRS +C L++L E +L LGEC DQGGYFI+N
Sbjct: 145 -KGFDCEEVTETQEFAKVFIGKVPIMLRSSYCSLYHLPEKDLMDLGECPYDQGGYFIVN 202
[11][TOP]
>UniRef100_Q1L5B4 DNA-directed RNA polymerase n=1 Tax=Rhododendron macrophyllum
RepID=Q1L5B4_RHOMC
Length = 1207
Score = 191 bits (484), Expect = 4e-47
Identities = 97/180 (53%), Positives = 126/180 (70%)
Frame = +1
Query: 4 NDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPG 183
++ +IS EDAW VI+AYF+E GLVRQQL S++EF+ TMQ +VDE+ DI + PE Q+ PG
Sbjct: 34 DEEEISQEDAWTVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDEAADIEIKPESQHNPG 93
Query: 184 RDAPDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVR 363
R + I FGQ+ +SKP TE++GE +L+P ARLRNLTYS+PLY DVTK V+
Sbjct: 94 RQSDFVEMVYRISFGQIYLSKPMMTESDGETASLFPKAARLRNLTYSSPLYVDVTKRVVK 153
Query: 364 LVDPETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
EE ++E KVFIG+VP+MLRS +C L+ +E +L LGEC DQGGYFIIN
Sbjct: 154 --KGHDCEEVTETQEFTKVFIGKVPIMLRSSYCSLYQTSEKDLTELGECPFDQGGYFIIN 211
[12][TOP]
>UniRef100_B9FA12 DNA-directed RNA polymerase n=1 Tax=Oryza sativa Japonica Group
RepID=B9FA12_ORYSJ
Length = 1218
Score = 189 bits (481), Expect = 9e-47
Identities = 98/181 (54%), Positives = 123/181 (67%)
Frame = +1
Query: 1 PNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVP 180
P++ +I+ EDAW VI+AYF+E GLVRQQL S++EF+ TMQ +VDES DI + PE Q+ P
Sbjct: 45 PDEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNP 104
Query: 181 GRDAPDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTV 360
GR A T I FGQ+ +SKP TE +GE TL+P ARLRNLTYS PLY DV+ +
Sbjct: 105 GRQAEFAETLHKISFGQIYLSKPMMTEADGETATLFPKSARLRNLTYSAPLYVDVSYRVM 164
Query: 361 RLVDPETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFII 540
+ EE + E KVFIG+VP+MLRS +C L +E +L LGEC DQGGYFII
Sbjct: 165 K--KGHDCEEVTETMEYPKVFIGKVPIMLRSSYCTLFQQSEKDLTELGECPYDQGGYFII 222
Query: 541 N 543
N
Sbjct: 223 N 223
[13][TOP]
>UniRef100_Q10G20 DNA-directed RNA polymerase n=2 Tax=Oryza sativa RepID=Q10G20_ORYSJ
Length = 1222
Score = 189 bits (481), Expect = 9e-47
Identities = 98/181 (54%), Positives = 123/181 (67%)
Frame = +1
Query: 1 PNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVP 180
P++ +I+ EDAW VI+AYF+E GLVRQQL S++EF+ TMQ +VDES DI + PE Q+ P
Sbjct: 49 PDEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNP 108
Query: 181 GRDAPDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTV 360
GR A T I FGQ+ +SKP TE +GE TL+P ARLRNLTYS PLY DV+ +
Sbjct: 109 GRQAEFAETLHKISFGQIYLSKPMMTEADGETATLFPKSARLRNLTYSAPLYVDVSYRVM 168
Query: 361 RLVDPETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFII 540
+ EE + E KVFIG+VP+MLRS +C L +E +L LGEC DQGGYFII
Sbjct: 169 K--KGHDCEEVTETMEYPKVFIGKVPIMLRSSYCTLFQQSEKDLTELGECPYDQGGYFII 226
Query: 541 N 543
N
Sbjct: 227 N 227
[14][TOP]
>UniRef100_Q1L5Z2 DNA-directed RNA polymerase n=1 Tax=Petunia x hybrida
RepID=Q1L5Z2_PETHY
Length = 1203
Score = 188 bits (477), Expect = 2e-46
Identities = 94/177 (53%), Positives = 126/177 (71%)
Frame = +1
Query: 13 DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDA 192
+I+ +DAW VI+AYF+E GLVRQQL S++EF+ TMQ +VDE+ DI + PE Q+ P R +
Sbjct: 33 EITQDDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDETADIEIRPESQHNPARQS 92
Query: 193 PDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVD 372
+T IKF Q+ +S+P TE++GE TL+P ARLRNLTYS+PLY DV K ++
Sbjct: 93 DFVDTIYKIKFTQIYLSRPMMTESDGETNTLFPKAARLRNLTYSSPLYVDVRKEVIK--K 150
Query: 373 PETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
EE + +E KVFIG+VP+MLRS +C L+NL+E +L LGEC DQGGYFI+N
Sbjct: 151 GHDYEEVSECQEFTKVFIGKVPIMLRSSYCSLYNLSEKDLTELGECPYDQGGYFIVN 207
[15][TOP]
>UniRef100_B9H2V2 Predicted protein (Fragment) n=1 Tax=Populus trichocarpa
RepID=B9H2V2_POPTR
Length = 690
Score = 188 bits (477), Expect = 2e-46
Identities = 98/187 (52%), Positives = 125/187 (66%), Gaps = 8/187 (4%)
Frame = +1
Query: 7 DADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGR 186
D +I+ EDAW VI+AYF+E GLVRQQL S++EF+ TMQ +VDES DI + PE Q+ PG
Sbjct: 9 DEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGH 68
Query: 187 DAPDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRL 366
+ T I FGQ+ +SKP TE++GE TL+P ARLRNLTYS PLY DVTK ++
Sbjct: 69 QSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIK- 127
Query: 367 VDPETGEEEATSEEPEKVFIGR--------VPVMLRSRFCLLHNLNEFELNSLGECHVDQ 522
GEE +++ KVFIG+ VP+MLRS +C L+ +E +L LGEC DQ
Sbjct: 128 -KGHDGEEVTETQDFTKVFIGKASIMNYLFVPIMLRSSYCTLYQNSEKDLTELGECPYDQ 186
Query: 523 GGYFIIN 543
GGYFIIN
Sbjct: 187 GGYFIIN 193
[16][TOP]
>UniRef100_Q1L5Z1 DNA-directed RNA polymerase n=1 Tax=Solanum lycopersicum
RepID=Q1L5Z1_SOLLC
Length = 1205
Score = 186 bits (472), Expect = 9e-46
Identities = 93/177 (52%), Positives = 124/177 (70%)
Frame = +1
Query: 13 DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDA 192
+I+ +DAW VI++YF+E GLVRQQL S++EF+ TMQ +VDE+ DI + PE Q+ P R
Sbjct: 39 EITQDDAWAVISSYFEEKGLVRQQLDSFDEFIQNTMQEIVDETADIEIRPESQHNPSRQP 98
Query: 193 PDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVD 372
T IKF Q+ +S+P TE++GE TL+P ARLRNLTYS+PLY DV K ++
Sbjct: 99 DFVETIYKIKFTQIYLSRPMMTESDGETNTLFPKAARLRNLTYSSPLYVDVKKEVIK--K 156
Query: 373 PETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
EE ++E KVFIG+VP+MLRS +C L+NL+E +L LGEC DQGGYFI+N
Sbjct: 157 GHDYEEVTENQEFTKVFIGKVPIMLRSSYCSLYNLSEKDLTELGECPYDQGGYFIVN 213
[17][TOP]
>UniRef100_Q1L5Z4 DNA-directed RNA polymerase n=1 Tax=Nicotiana sylvestris
RepID=Q1L5Z4_NICSY
Length = 1203
Score = 185 bits (470), Expect = 2e-45
Identities = 93/177 (52%), Positives = 124/177 (70%)
Frame = +1
Query: 13 DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDA 192
+I+ +DAW VI+AYF+E GLVRQQL S++EF+ TMQ +VDE+ +I + PE Q+ P R
Sbjct: 34 EITQDDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDETANIEIRPESQHNPSRQP 93
Query: 193 PDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVD 372
T IKF Q+ +S+P TE++GE TL+P ARLRNLTYS+PLY DV K ++
Sbjct: 94 DFVETIYKIKFTQIYLSRPMMTESDGETNTLFPKAARLRNLTYSSPLYVDVKKEVIK--K 151
Query: 373 PETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
EE ++E KVFIG+VP+MLRS +C L+NL+E +L LGEC DQGGYFI+N
Sbjct: 152 GHDYEEVTENQEFTKVFIGKVPIMLRSSYCSLYNLSEKDLTELGECPYDQGGYFIVN 208
[18][TOP]
>UniRef100_Q54J75 DNA-directed RNA polymerase II subunit rpb2 n=1 Tax=Dictyostelium
discoideum RepID=RPB2_DICDI
Length = 1170
Score = 185 bits (470), Expect = 2e-45
Identities = 93/179 (51%), Positives = 125/179 (69%), Gaps = 1/179 (0%)
Frame = +1
Query: 10 ADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRD 189
ADIS ED W VI+AYF E GLVRQQL S++EF+ TMQ ++DESP I L PE Q+ PG+
Sbjct: 16 ADISQEDVWTVISAYFQEKGLVRQQLDSFDEFIQNTMQEIIDESPPITLRPESQHHPGQA 75
Query: 190 APDENTKVV-IKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRL 366
N +KFGQ+ +SKP E +G + + PNQAR+RNLTYS PL+ D+TK TV
Sbjct: 76 VVSNNVSTFSVKFGQIYLSKPT-AEIDGVSQQVTPNQARIRNLTYSAPLFVDITK-TVMT 133
Query: 367 VDPETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
G+E T E +++FIG+VP+MLRS++C+L+ ++ +L ++GEC DQGGYFIIN
Sbjct: 134 GSKSKGDERRTDEVLKRIFIGKVPIMLRSQYCMLNEADDRDLTTMGECSFDQGGYFIIN 192
[19][TOP]
>UniRef100_Q1L5X1 DNA-directed RNA polymerase n=1 Tax=Chlamydomonas reinhardtii
RepID=Q1L5X1_CHLRE
Length = 1607
Score = 185 bits (469), Expect = 2e-45
Identities = 93/180 (51%), Positives = 127/180 (70%), Gaps = 1/180 (0%)
Frame = +1
Query: 7 DADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGR 186
D +I ED+W VI A+FD+ GLVRQQL S+NEFV+VT+Q ++DE+P+IV+ PE Q++PG
Sbjct: 9 DTEIVQEDSWNVITAFFDDKGLVRQQLDSFNEFVNVTIQEIIDETPEIVIKPESQHLPGV 68
Query: 187 DAPDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRL 366
+A +E + +IKFGQ+ +S+P TE +GE+ L+P +ARLRNLTY PLY DVTKT
Sbjct: 69 EAAEEK-EYIIKFGQVYLSRPQITEQDGESVVLFPKEARLRNLTYCAPLYVDVTKTEYTR 127
Query: 367 VDPETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLN-EFELNSLGECHVDQGGYFIIN 543
V EE+ + V +G+VP+ML+S C LH + E E +LGEC DQGGYF+IN
Sbjct: 128 VGENEVEEKT---DLSHVHLGKVPIMLKSERCNLHEASTEQEATNLGECPYDQGGYFVIN 184
[20][TOP]
>UniRef100_C5WR62 DNA-directed RNA polymerase n=1 Tax=Sorghum bicolor
RepID=C5WR62_SORBI
Length = 1218
Score = 185 bits (469), Expect = 2e-45
Identities = 95/177 (53%), Positives = 120/177 (67%)
Frame = +1
Query: 13 DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDA 192
+I +DAW VI+AYF+E GLVRQQL S++EF+ TMQ +VDES DI + PE Q+ PGR A
Sbjct: 64 EIGQDDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGRQA 123
Query: 193 PDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVD 372
T I FGQ+ +SKP TE +GE TL+P ARLRNLTYS PLY DV+ ++
Sbjct: 124 EFAETLHKISFGQIYLSKPMMTEADGETATLFPKSARLRNLTYSAPLYVDVSYRVMK--K 181
Query: 373 PETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
EE + + KVFIG+VP+MLRS +C L+ +E +L LGEC DQGGYFIIN
Sbjct: 182 GHDCEEVTETADYPKVFIGKVPIMLRSSYCTLYQQSEKDLTELGECPYDQGGYFIIN 238
[21][TOP]
>UniRef100_C1E1U0 DNA-directed RNA polymerase n=1 Tax=Micromonas sp. RCC299
RepID=C1E1U0_9CHLO
Length = 1178
Score = 184 bits (467), Expect = 4e-45
Identities = 92/185 (49%), Positives = 127/185 (68%), Gaps = 6/185 (3%)
Frame = +1
Query: 7 DADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGR 186
+ +I EDAW VI+++F+E GL RQQL S+NEF+ TMQ +VDE D + PE+Q++PG
Sbjct: 11 EEEIGQEDAWTVISSFFEEKGLARQQLDSFNEFIQHTMQEIVDEMSDFTIEPEEQHMPGE 70
Query: 187 DAPDE-NTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVR 363
+A + K ++F Q+ +SKP TE +G TL+P +ARLRNLTYS PLY D+ K+T+
Sbjct: 71 EADGKGKKKYKVEFKQIYLSKPMVTEADGMTSTLFPKEARLRNLTYSAPLYIDMAKSTIT 130
Query: 364 L---VDPETGE--EEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGG 528
+D TG+ E +EE KVF G+VP+MLRS++C LH+ + EL LGEC D+GG
Sbjct: 131 TTDEIDATTGKYIETIDTEEYPKVFFGKVPIMLRSQYCSLHDHTDKELTELGECPYDEGG 190
Query: 529 YFIIN 543
YFIIN
Sbjct: 191 YFIIN 195
[22][TOP]
>UniRef100_A4RQU3 DNA-directed RNA polymerase n=1 Tax=Ostreococcus lucimarinus
CCE9901 RepID=A4RQU3_OSTLU
Length = 1174
Score = 177 bits (449), Expect = 4e-43
Identities = 93/180 (51%), Positives = 119/180 (66%), Gaps = 1/180 (0%)
Frame = +1
Query: 7 DADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGR 186
+ +I EDAW VI+++F+E GLVRQQL S+NEF+ TMQ +VDE +I L PE Q++PG+
Sbjct: 11 EEEIGQEDAWVVISSFFEEKGLVRQQLDSFNEFIQHTMQEIVDEMREIELTPEHQHMPGQ 70
Query: 187 DAPDENTKVV-IKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVR 363
D K I F Q+ +SKP TE +G TL+P +ARLRNLTYS PLY D+ K V
Sbjct: 71 DIDSMEKKTYKISFNQIYLSKPMVTEADGYTTTLFPKEARLRNLTYSAPLYVDMVK-EVT 129
Query: 364 LVDPETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
V P+ GE E K FIG+VP+MLRS +C LH + EL LGEC D+GGYF+IN
Sbjct: 130 TVQPD-GETTVEKEILNKNFIGKVPIMLRSDYCSLHGHTDKELTELGECPYDEGGYFVIN 188
[23][TOP]
>UniRef100_A9BK63 DNA-directed RNA polymerase n=1 Tax=Cryptophyta RepID=A9BK63_9CRYP
Length = 1222
Score = 176 bits (447), Expect = 8e-43
Identities = 83/182 (45%), Positives = 123/182 (67%), Gaps = 2/182 (1%)
Frame = +1
Query: 4 NDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPG 183
ND I +D W ++ ++F E+ LVRQQL S+NEF+ TMQ ++D+ P IV+ E
Sbjct: 6 NDEIIKQDDMWIILESFFKENNLVRQQLDSFNEFIQNTMQDIIDDIPPIVIKTEFDKFKS 65
Query: 184 RDAPDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVR 363
+ ++ K++++FGQL +SKP F E NG TL PN+ARLRNLTYS+PLYCD++ T+
Sbjct: 66 SETK-KSLKLILRFGQLHLSKPTFIEENGTTHTLLPNEARLRNLTYSSPLYCDISTITLN 124
Query: 364 LVDPETGE--EEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFI 537
+ + TGE E ++ +K+ +GR+P+M++SRFC+L L +L +GEC +D GGYFI
Sbjct: 125 ITEELTGEIKENFLKDDHQKILLGRIPIMVKSRFCVLDKLLPMDLIRIGECPIDPGGYFI 184
Query: 538 IN 543
IN
Sbjct: 185 IN 186
[24][TOP]
>UniRef100_Q1WMR3 DNA-directed RNA polymerase n=1 Tax=Coprinellus disseminatus
RepID=Q1WMR3_COPDI
Length = 1241
Score = 174 bits (440), Expect = 5e-42
Identities = 93/186 (50%), Positives = 125/186 (67%), Gaps = 8/186 (4%)
Frame = +1
Query: 10 ADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRD 189
A+I+ ED W VI ++FD+ GLVRQQL S++EFV TMQ LVDE+ D++L DQ+ G D
Sbjct: 45 AEITQEDCWTVITSFFDQKGLVRQQLDSFDEFVQNTMQELVDENADLILDQADQHT-GHD 103
Query: 190 APDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTT-VRL 366
D + IKFGQ+ +S+P TE +G L+P +ARLRNLTYS+PLY ++ K +
Sbjct: 104 T-DMTRRYEIKFGQIYLSRPTVTEADGSVFPLFPQEARLRNLTYSSPLYVEMKKRVLIGR 162
Query: 367 VDPE--TGE-----EEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQG 525
DP+ G+ E+ + EPEK++IG+VP+MLRS FC+LH L + EL L EC D G
Sbjct: 163 EDPDGVPGDIQWETEQEDTGEPEKIWIGKVPIMLRSSFCILHQLRDNELYDLNECPYDSG 222
Query: 526 GYFIIN 543
GYFIIN
Sbjct: 223 GYFIIN 228
[25][TOP]
>UniRef100_UPI00017937B7 PREDICTED: similar to DNA-directed RNA polymerase II 140 kDa
polypeptide n=1 Tax=Acyrthosiphon pisum
RepID=UPI00017937B7
Length = 1101
Score = 171 bits (434), Expect = 2e-41
Identities = 88/178 (49%), Positives = 119/178 (66%)
Frame = +1
Query: 10 ADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRD 189
+++ E W VIN+YFDE GLVRQQL S++EF+ +++QR+V++SP I L E Q+ G
Sbjct: 20 SELWQEACWIVINSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIELQAESQHTHGEI 79
Query: 190 APDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLV 369
D TK IKF Q+ +SKP E +G + PN+ARLRNLTYS PLY D+TKT ++
Sbjct: 80 --DTPTKYQIKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVIK-- 135
Query: 370 DPETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
GEE ++ K FIG++P+MLRS +CLL LN+ +L L EC +D GGYFIIN
Sbjct: 136 ---DGEEPVVTQH-SKSFIGKIPIMLRSTYCLLFGLNDRDLTELNECPLDPGGYFIIN 189
[26][TOP]
>UniRef100_C1ML14 DNA-directed RNA polymerase n=1 Tax=Micromonas pusilla CCMP1545
RepID=C1ML14_9CHLO
Length = 1172
Score = 171 bits (434), Expect = 2e-41
Identities = 91/181 (50%), Positives = 115/181 (63%), Gaps = 2/181 (1%)
Frame = +1
Query: 7 DADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLV-DESPDIVLIPEDQYVPG 183
D +I EDAW VI+++F+E GL RQQL S+NEF+ MQ +V DE L PE Q+VPG
Sbjct: 10 DEEIGQEDAWTVISSFFEEKGLARQQLDSFNEFIQHAMQEIVVDEMSSFELEPEQQHVPG 69
Query: 184 RDAPDENTKVV-IKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTV 360
+ K I F Q+ +SKP TE +G TL+P +ARLRNLTYS PLY D+ KT
Sbjct: 70 EEGEGGEKKTYKISFKQIYLSKPMVTEADGMTSTLFPKEARLRNLTYSAPLYVDMEKTVT 129
Query: 361 RLVDPETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFII 540
+ EE E+ KVFIG+VP+MLRS +C LH+ + EL LGEC D+GGYFII
Sbjct: 130 TVTLDSQKTEEV--EKINKVFIGKVPIMLRSEYCSLHDHTDKELTELGECPYDEGGYFII 187
Query: 541 N 543
N
Sbjct: 188 N 188
[27][TOP]
>UniRef100_UPI00015B44D8 PREDICTED: similar to ENSANGP00000011389 n=1 Tax=Nasonia
vitripennis RepID=UPI00015B44D8
Length = 1175
Score = 169 bits (428), Expect = 1e-40
Identities = 86/173 (49%), Positives = 118/173 (68%)
Frame = +1
Query: 25 EDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAPDEN 204
E W VINAYFDE GLVRQQL S++EF+ +++QR+V+ESP I L E Q+ G +
Sbjct: 24 EACWIVINAYFDEKGLVRQQLDSFDEFIEMSVQRIVEESPQIDLQAEAQHRTGDI--ETP 81
Query: 205 TKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVDPETG 384
T+ ++KF Q+ +SKP E +G + PN+ARLRNLTYS PLY D+TKT ++
Sbjct: 82 TRHLVKFEQIYLSKPTHWEKDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIK------E 135
Query: 385 EEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
EE T + +K FIG++P+MLRS++CLL L++ +L L EC +D GGYFIIN
Sbjct: 136 GEEPTETQHQKTFIGKIPIMLRSKYCLLAGLSDRDLTELNECPLDPGGYFIIN 188
[28][TOP]
>UniRef100_B6K5Q5 DNA-directed RNA polymerase n=1 Tax=Schizosaccharomyces japonicus
yFS275 RepID=B6K5Q5_SCHJY
Length = 1210
Score = 169 bits (428), Expect = 1e-40
Identities = 88/183 (48%), Positives = 120/183 (65%), Gaps = 7/183 (3%)
Frame = +1
Query: 16 ISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAP 195
++ ED W VI++YF+E+ L RQQL S++EFV TMQ +VD+ + L DQY A
Sbjct: 12 LTQEDCWTVISSYFEENSLARQQLSSFDEFVQNTMQEIVDDDSTLTL---DQYAQHTGAQ 68
Query: 196 DENTK-VVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVD 372
+ T+ I FGQ+ +S+P TE +G T++P +ARLRNLTYS+PLY D+ K +R D
Sbjct: 69 GDYTRRYEINFGQIYLSRPTMTEADGSTTTMFPQEARLRNLTYSSPLYVDMRKKVMRAQD 128
Query: 373 PET--GEE----EATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYF 534
GEE E +EP KVFIG++P+MLRS FC+L+ +++ EL L EC DQGGYF
Sbjct: 129 SNVPIGEEIWLTEEEDDEPSKVFIGKIPIMLRSTFCILNGVSDSELYDLNECPYDQGGYF 188
Query: 535 IIN 543
IIN
Sbjct: 189 IIN 191
[29][TOP]
>UniRef100_B8C598 DNA-directed RNA polymerase n=1 Tax=Thalassiosira pseudonana
CCMP1335 RepID=B8C598_THAPS
Length = 1196
Score = 169 bits (427), Expect = 2e-40
Identities = 93/195 (47%), Positives = 126/195 (64%), Gaps = 15/195 (7%)
Frame = +1
Query: 4 NDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPG 183
+D ++ EDAW VI+AYF+E GLVRQQL S++EF+ TMQ LVD+S I + PE Q++ G
Sbjct: 4 DDMPVTQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQELVDDSGSIRVSPEIQHLVG 63
Query: 184 RD------APDENTKVV--IKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYC 339
D + TK V +KFGQ+ +SKP E +G ++P++ARLRNLTY+ PLY
Sbjct: 64 YDEANFDETMNSTTKKVFEVKFGQVYLSKPTTVEKDGTVTNMFPHEARLRNLTYAAPLYV 123
Query: 340 DVTK------TTVRLVDP-ETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNS 498
DVT V + DP E E ++EE K F+G VP+MLRS FC+L + ++ +L
Sbjct: 124 DVTMNEYRVGNDVNVGDPAEDMGEPVSTEEARKEFLGYVPIMLRSLFCVLSDKDDAQLAD 183
Query: 499 LGECHVDQGGYFIIN 543
LGEC DQGGYF+IN
Sbjct: 184 LGECIYDQGGYFVIN 198
[30][TOP]
>UniRef100_A8PJ53 Putative uncharacterized protein n=1 Tax=Coprinopsis cinerea
okayama7#130 RepID=A8PJ53_COPC7
Length = 742
Score = 167 bits (422), Expect = 6e-40
Identities = 89/186 (47%), Positives = 118/186 (63%), Gaps = 8/186 (4%)
Frame = +1
Query: 10 ADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRD 189
A I+ ED W VI+++FD+ GLVRQQL S++EFV TMQ LVDE+ D++L DQ+
Sbjct: 27 APITQEDCWTVISSFFDQKGLVRQQLDSFDEFVQNTMQELVDENSDLILDQADQHT--GQ 84
Query: 190 APDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTK-TTVRL 366
A D + IKFGQ+ +S+P TE +G ++P +ARLRNLTYS PLY ++ K V
Sbjct: 85 AGDMTRRYEIKFGQIYLSRPTVTEADGSVVPVFPQEARLRNLTYSAPLYIEMRKRVLVGR 144
Query: 367 VDPET-------GEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQG 525
DP E E T + K++IG+VP+MLRS FC+LH L + +L L EC D G
Sbjct: 145 EDPAVPGDITWEAEHEDTDGDAAKIWIGKVPIMLRSSFCILHELRDQDLYDLNECPYDSG 204
Query: 526 GYFIIN 543
GYFIIN
Sbjct: 205 GYFIIN 210
[31][TOP]
>UniRef100_A8N2R8 DNA-directed RNA polymerase n=1 Tax=Coprinopsis cinerea
okayama7#130 RepID=A8N2R8_COPC7
Length = 1222
Score = 167 bits (422), Expect = 6e-40
Identities = 89/186 (47%), Positives = 118/186 (63%), Gaps = 8/186 (4%)
Frame = +1
Query: 10 ADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRD 189
A I+ ED W VI+++FD+ GLVRQQL S++EFV TMQ LVDE+ D++L DQ+
Sbjct: 27 APITQEDCWTVISSFFDQKGLVRQQLDSFDEFVQNTMQELVDENSDLILDQADQHT--GQ 84
Query: 190 APDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTK-TTVRL 366
A D + IKFGQ+ +S+P TE +G ++P +ARLRNLTYS PLY ++ K V
Sbjct: 85 AGDMTRRYEIKFGQIYLSRPTVTEADGSVVPVFPQEARLRNLTYSAPLYIEMRKRVLVGR 144
Query: 367 VDPET-------GEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQG 525
DP E E T + K++IG+VP+MLRS FC+LH L + +L L EC D G
Sbjct: 145 EDPAVPGDITWEAEHEDTDGDAAKIWIGKVPIMLRSSFCILHELRDQDLYDLNECPYDSG 204
Query: 526 GYFIIN 543
GYFIIN
Sbjct: 205 GYFIIN 210
[32][TOP]
>UniRef100_UPI0000D5712C PREDICTED: similar to AGAP003648-PA n=1 Tax=Tribolium castaneum
RepID=UPI0000D5712C
Length = 1175
Score = 166 bits (420), Expect = 1e-39
Identities = 83/178 (46%), Positives = 119/178 (66%)
Frame = +1
Query: 10 ADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRD 189
+++ E W VINAYFDE GLVRQQL S++EF+ +++QR+V++SP I L E Q+ G
Sbjct: 19 SELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSGE- 77
Query: 190 APDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLV 369
+ ++ ++KF Q+ +SKP E +G + PN+ARLRNLTYS PLY D+TKT V+
Sbjct: 78 -LENPSRYLLKFEQIYLSKPTHWEKDGAPSPMMPNEARLRNLTYSAPLYVDITKTIVK-- 134
Query: 370 DPETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
E+ + +K FIG++P+MLRS +CLL+ L + +L L EC +D GGYFIIN
Sbjct: 135 ----DGEDPIETQHQKTFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIIN 188
[33][TOP]
>UniRef100_A8I9Z6 DNA-directed RNA polymerase n=1 Tax=Chlamydomonas reinhardtii
RepID=A8I9Z6_CHLRE
Length = 1634
Score = 166 bits (420), Expect = 1e-39
Identities = 86/179 (48%), Positives = 121/179 (67%), Gaps = 1/179 (0%)
Frame = +1
Query: 7 DADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGR 186
D +I ED+W VI A+FD+ GLVRQQL S+NEFV+VT+Q ++DE+P+IV+ PE Q++PG
Sbjct: 17 DTEIVQEDSWNVITAFFDDKGLVRQQLDSFNEFVNVTIQEIIDETPEIVIKPESQHLPGV 76
Query: 187 DAPDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRL 366
+A +E + +IKFGQ+ +S+P TE +GE+ L+P +ARLRNLTY PLY DVTKT
Sbjct: 77 EAAEEK-EYIIKFGQVYLSRPQITEQDGESVVLFPKEARLRNLTYCAPLYVDVTKTEYTR 135
Query: 367 VDPETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLN-EFELNSLGECHVDQGGYFII 540
V EE+ +E V +G+VP+ML+S C LH + E E +LGE + I+
Sbjct: 136 VGENEVEEK--TETFSHVHLGKVPIMLKSERCNLHEASTEQEATNLGESYFGAAACLIV 192
[34][TOP]
>UniRef100_A8Q7K3 DNA-directed RNA polymerase n=1 Tax=Brugia malayi
RepID=A8Q7K3_BRUMA
Length = 1185
Score = 166 bits (420), Expect = 1e-39
Identities = 85/183 (46%), Positives = 121/183 (66%), Gaps = 4/183 (2%)
Frame = +1
Query: 7 DADISAED----AWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQY 174
D +IS+E W VI+AYFDE GLVRQQL S++EF+ + +QR+V++SP + L E Q+
Sbjct: 16 DEEISSEQWQEACWVVISAYFDEKGLVRQQLDSFDEFIQMNVQRIVEDSPPVELQSEVQH 75
Query: 175 VPGRDAPDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKT 354
G + K +KF Q+ +SKP E +G + PN+ARLRNLTYS+PLY D+TKT
Sbjct: 76 FSGD--VENPIKFALKFDQIYLSKPTHWEKDGAPTPMMPNEARLRNLTYSSPLYIDITKT 133
Query: 355 TVRLVDPETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYF 534
R EE + EKVF+G++P+MLRS +C+L N+++ +L+ L EC +D GGYF
Sbjct: 134 MTR------SGEEPKETKYEKVFVGKIPIMLRSSYCMLANMSDRDLSELNECPLDPGGYF 187
Query: 535 IIN 543
+IN
Sbjct: 188 VIN 190
[35][TOP]
>UniRef100_UPI00006A01AA DNA-directed RNA polymerase II subunit RPB2 (EC 2.7.7.6) (RNA
polymerase II subunit B2) (DNA-directed RNA polymerase
II subunit B) (RNA polymerase II subunit 2)
(DNA-directed RNA polymerase II 140 kDa polypeptide).
n=1 Tax=Xenopus (Silurana) tropicalis
RepID=UPI00006A01AA
Length = 927
Score = 166 bits (419), Expect = 1e-39
Identities = 84/177 (47%), Positives = 121/177 (68%)
Frame = +1
Query: 13 DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDA 192
D+ E W VI++YFDE GLVRQQL S++EF+ +++QR+V+++P I L E Q+ G
Sbjct: 20 DLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHTTGE-- 77
Query: 193 PDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVD 372
+E + ++KF Q+ +SKP E +G + PN+ARLRNLTYS PLY D+TKT V+
Sbjct: 78 VEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVVK--- 134
Query: 373 PETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
GEE+ ++ +K FIG++P+MLRS +CLL+ L + +L L EC +D GGYFIIN
Sbjct: 135 --EGEEQIQTQH-QKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIIN 188
[36][TOP]
>UniRef100_Q6PA46 MGC68569 protein n=1 Tax=Xenopus laevis RepID=Q6PA46_XENLA
Length = 949
Score = 166 bits (419), Expect = 1e-39
Identities = 84/177 (47%), Positives = 121/177 (68%)
Frame = +1
Query: 13 DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDA 192
D+ E W VI++YFDE GLVRQQL S++EF+ +++QR+V+++P I L E Q+ G
Sbjct: 20 DLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHTTGE-- 77
Query: 193 PDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVD 372
+E + ++KF Q+ +SKP E +G + PN+ARLRNLTYS PLY D+TKT V+
Sbjct: 78 VEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVVK--- 134
Query: 373 PETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
GEE+ ++ +K FIG++P+MLRS +CLL+ L + +L L EC +D GGYFIIN
Sbjct: 135 --EGEEQIQTQH-QKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIIN 188
[37][TOP]
>UniRef100_B7FVG3 DNA-directed RNA polymerase n=1 Tax=Phaeodactylum tricornutum CCAP
1055/1 RepID=B7FVG3_PHATR
Length = 1212
Score = 166 bits (419), Expect = 1e-39
Identities = 93/196 (47%), Positives = 128/196 (65%), Gaps = 16/196 (8%)
Frame = +1
Query: 4 NDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPG 183
++ ++ EDAW VI+AYF+E GLVRQQL S++EF+ TMQ LVD+S DI + PE Q++ G
Sbjct: 22 DEIPVTQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQELVDDSGDIRVSPEIQHMVG 81
Query: 184 RD------APDENTKVV--IKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYC 339
D ++ TK V I FGQ+ +SKP E +G ++P++ARLRN+TYS PLY
Sbjct: 82 YDDEAYDREQEKETKFVFEIHFGQVYLSKPTTVEKDGTITNMFPHEARLRNMTYSAPLYV 141
Query: 340 DV------TKTTVRLVDP--ETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELN 495
DV V + DP + GE AT E +K F+G VP+MLRS FC+L + ++ +L+
Sbjct: 142 DVDLNQYQVGREVNVNDPSEDLGEPVAT-EHAKKEFLGYVPIMLRSLFCVLSDKDDADLS 200
Query: 496 SLGECHVDQGGYFIIN 543
LGEC DQGGYF+IN
Sbjct: 201 DLGECVYDQGGYFVIN 216
[38][TOP]
>UniRef100_B7QNH8 DNA-directed RNA polymerase n=1 Tax=Ixodes scapularis
RepID=B7QNH8_IXOSC
Length = 1142
Score = 166 bits (419), Expect = 1e-39
Identities = 83/177 (46%), Positives = 121/177 (68%)
Frame = +1
Query: 13 DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDA 192
D+ E W VI+AYFDE GLVRQQL S++EF+ +++QR+V+++P I L E Q+ G
Sbjct: 20 DLWQEACWIVISAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDTPQIDLQAEAQHASGEI- 78
Query: 193 PDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVD 372
+ + ++KF Q+ +SKP E +G + PN+ARLRNLTYS PLY D+TKT ++
Sbjct: 79 -ENPPRYLLKFEQIYLSKPTHWEKDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIK--- 134
Query: 373 PETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
GEE ++ +K FIG++P+MLRS +CLL++L + +L+ L EC +D GGYFIIN
Sbjct: 135 --EGEEPVETQH-QKTFIGKIPIMLRSTYCLLNSLTDRDLSELNECPLDPGGYFIIN 188
[39][TOP]
>UniRef100_B4DHJ3 DNA-directed RNA polymerase n=1 Tax=Homo sapiens RepID=B4DHJ3_HUMAN
Length = 1167
Score = 166 bits (419), Expect = 1e-39
Identities = 83/177 (46%), Positives = 121/177 (68%)
Frame = +1
Query: 13 DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDA 192
D+ E W VI++YFDE GLVRQQL S++EF+ +++QR+V+++P I L E Q+ G
Sbjct: 13 DLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHASGE-- 70
Query: 193 PDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVD 372
+E + ++KF Q+ +SKP E +G + PN+ARLRNLTYS PLY D+TKT ++
Sbjct: 71 VEEPPRYLLKFEQIYLSKPTHRERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIK--- 127
Query: 373 PETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
GEE+ ++ +K FIG++P+MLRS +CLL+ L + +L L EC +D GGYFIIN
Sbjct: 128 --EGEEQLQTQH-QKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIIN 181
[40][TOP]
>UniRef100_Q5KIB7 DNA-directed RNA polymerase n=1 Tax=Filobasidiella neoformans
RepID=Q5KIB7_CRYNE
Length = 1193
Score = 166 bits (419), Expect = 1e-39
Identities = 91/190 (47%), Positives = 119/190 (62%), Gaps = 11/190 (5%)
Frame = +1
Query: 7 DADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGR 186
D IS ED W VIN++F+E GLVRQQL+S+NEF+ TMQ +VD+ + L QY
Sbjct: 46 DEPISQEDYWTVINSFFEEKGLVRQQLESFNEFIENTMQEIVDDHSRLTLDQFTQYTGV- 104
Query: 187 DAPDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRL 366
A DE + I FGQ+ +++ N TE +G L+P +ARLRNLTYS PLY D+ K T+
Sbjct: 105 -AGDETRRYEISFGQIYLARVNHTEMDGRTNMLFPQEARLRNLTYSAPLYVDIKKRTLTA 163
Query: 367 --VD--------PETGEE-EATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECH 513
VD P G++ E E EK IG+VPVM+RS FCLLH L + + + +GEC
Sbjct: 164 SGVDDPVEADWQPAVGDDGEVEGAEEEKTSIGKVPVMVRSNFCLLHGLPDDQCHEIGECP 223
Query: 514 VDQGGYFIIN 543
DQGGYFII+
Sbjct: 224 YDQGGYFIIS 233
[41][TOP]
>UniRef100_Q55U25 DNA-directed RNA polymerase n=1 Tax=Filobasidiella neoformans
RepID=Q55U25_CRYNE
Length = 1245
Score = 166 bits (419), Expect = 1e-39
Identities = 91/190 (47%), Positives = 119/190 (62%), Gaps = 11/190 (5%)
Frame = +1
Query: 7 DADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGR 186
D IS ED W VIN++F+E GLVRQQL+S+NEF+ TMQ +VD+ + L QY
Sbjct: 45 DEPISQEDYWTVINSFFEEKGLVRQQLESFNEFIENTMQEIVDDHSRLTLDQFTQYTGV- 103
Query: 187 DAPDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRL 366
A DE + I FGQ+ +++ N TE +G L+P +ARLRNLTYS PLY D+ K T+
Sbjct: 104 -AGDETRRYEISFGQIYLARVNHTEMDGRTNMLFPQEARLRNLTYSAPLYVDIKKRTLTA 162
Query: 367 --VD--------PETGEE-EATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECH 513
VD P G++ E E EK IG+VPVM+RS FCLLH L + + + +GEC
Sbjct: 163 SGVDDPVEADWQPAVGDDGEVEGAEEEKTSIGKVPVMVRSNFCLLHGLPDDQCHEIGECP 222
Query: 514 VDQGGYFIIN 543
DQGGYFII+
Sbjct: 223 YDQGGYFIIS 232
[42][TOP]
>UniRef100_UPI0001795E58 PREDICTED: similar to DNA-directed RNA polymerase II subunit RPB2
(RNA polymerase II subunit B2) (DNA-directed RNA
polymerase II subunit B) (RNA polymerase II subunit 2)
(DNA-directed RNA polymerase II 140 kDa polypeptide) n=1
Tax=Equus caballus RepID=UPI0001795E58
Length = 1174
Score = 165 bits (418), Expect = 2e-39
Identities = 83/177 (46%), Positives = 121/177 (68%)
Frame = +1
Query: 13 DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDA 192
D+ E W VI++YFDE GLVRQQL S++EF+ +++QR+V+++P I L E Q+ G
Sbjct: 20 DLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHASGE-- 77
Query: 193 PDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVD 372
+E + ++KF Q+ +SKP E +G + PN+ARLRNLTYS PLY D+TKT ++
Sbjct: 78 VEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIK--- 134
Query: 373 PETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
GEE+ ++ +K FIG++P+MLRS +CLL+ L + +L L EC +D GGYFIIN
Sbjct: 135 --EGEEQLQTQH-QKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIIN 188
[43][TOP]
>UniRef100_UPI000155BCC7 PREDICTED: similar to RNA polymerase II 140 kDa subunit, partial
n=1 Tax=Ornithorhynchus anatinus RepID=UPI000155BCC7
Length = 951
Score = 165 bits (418), Expect = 2e-39
Identities = 83/177 (46%), Positives = 121/177 (68%)
Frame = +1
Query: 13 DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDA 192
D+ E W VI++YFDE GLVRQQL S++EF+ +++QR+V+++P I L E Q+ G
Sbjct: 20 DLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHATGE-- 77
Query: 193 PDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVD 372
+E + ++KF Q+ +SKP E +G + PN+ARLRNLTYS PLY D+TKT ++
Sbjct: 78 VEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIK--- 134
Query: 373 PETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
GEE+ ++ +K FIG++P+MLRS +CLL+ L + +L L EC +D GGYFIIN
Sbjct: 135 --EGEEQLQTQH-QKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIIN 188
[44][TOP]
>UniRef100_UPI0000F2D75F PREDICTED: similar to RNA polymerase II 140 kDa subunit n=1
Tax=Monodelphis domestica RepID=UPI0000F2D75F
Length = 1174
Score = 165 bits (418), Expect = 2e-39
Identities = 83/177 (46%), Positives = 121/177 (68%)
Frame = +1
Query: 13 DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDA 192
D+ E W VI++YFDE GLVRQQL S++EF+ +++QR+V+++P I L E Q+ G
Sbjct: 20 DLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHATGE-- 77
Query: 193 PDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVD 372
+E + ++KF Q+ +SKP E +G + PN+ARLRNLTYS PLY D+TKT ++
Sbjct: 78 VEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIK--- 134
Query: 373 PETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
GEE+ ++ +K FIG++P+MLRS +CLL+ L + +L L EC +D GGYFIIN
Sbjct: 135 --EGEEQLQTQH-QKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIIN 188
[45][TOP]
>UniRef100_P30876 DNA-directed RNA polymerase II subunit RPB2 n=2 Tax=Catarrhini
RepID=RPB2_HUMAN
Length = 1174
Score = 165 bits (418), Expect = 2e-39
Identities = 83/177 (46%), Positives = 121/177 (68%)
Frame = +1
Query: 13 DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDA 192
D+ E W VI++YFDE GLVRQQL S++EF+ +++QR+V+++P I L E Q+ G
Sbjct: 20 DLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHASGE-- 77
Query: 193 PDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVD 372
+E + ++KF Q+ +SKP E +G + PN+ARLRNLTYS PLY D+TKT ++
Sbjct: 78 VEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIK--- 134
Query: 373 PETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
GEE+ ++ +K FIG++P+MLRS +CLL+ L + +L L EC +D GGYFIIN
Sbjct: 135 --EGEEQLQTQH-QKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIIN 188
[46][TOP]
>UniRef100_UPI00005A2A5C PREDICTED: similar to DNA-directed RNA polymerase II 140 kDa
polypeptide (RNA polymerase II subunit 2) (RPB2) isoform
16 n=1 Tax=Canis lupus familiaris RepID=UPI00005A2A5C
Length = 1173
Score = 165 bits (418), Expect = 2e-39
Identities = 83/177 (46%), Positives = 121/177 (68%)
Frame = +1
Query: 13 DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDA 192
D+ E W VI++YFDE GLVRQQL S++EF+ +++QR+V+++P I L E Q+ G
Sbjct: 20 DLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHASGE-- 77
Query: 193 PDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVD 372
+E + ++KF Q+ +SKP E +G + PN+ARLRNLTYS PLY D+TKT ++
Sbjct: 78 VEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIK--- 134
Query: 373 PETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
GEE+ ++ +K FIG++P+MLRS +CLL+ L + +L L EC +D GGYFIIN
Sbjct: 135 --EGEEQLQTQH-QKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIIN 188
[47][TOP]
>UniRef100_UPI00005A2A5B PREDICTED: similar to DNA-directed RNA polymerase II 140 kDa
polypeptide (RNA polymerase II subunit 2) (RPB2) isoform
15 n=1 Tax=Canis lupus familiaris RepID=UPI00005A2A5B
Length = 1179
Score = 165 bits (418), Expect = 2e-39
Identities = 83/177 (46%), Positives = 121/177 (68%)
Frame = +1
Query: 13 DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDA 192
D+ E W VI++YFDE GLVRQQL S++EF+ +++QR+V+++P I L E Q+ G
Sbjct: 20 DLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHASGE-- 77
Query: 193 PDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVD 372
+E + ++KF Q+ +SKP E +G + PN+ARLRNLTYS PLY D+TKT ++
Sbjct: 78 VEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIK--- 134
Query: 373 PETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
GEE+ ++ +K FIG++P+MLRS +CLL+ L + +L L EC +D GGYFIIN
Sbjct: 135 --EGEEQLQTQH-QKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIIN 188
[48][TOP]
>UniRef100_UPI00005A2A5A PREDICTED: similar to DNA-directed RNA polymerase II 140 kDa
polypeptide (RNA polymerase II subunit 2) (RPB2) isoform
14 n=1 Tax=Canis lupus familiaris RepID=UPI00005A2A5A
Length = 1175
Score = 165 bits (418), Expect = 2e-39
Identities = 83/177 (46%), Positives = 121/177 (68%)
Frame = +1
Query: 13 DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDA 192
D+ E W VI++YFDE GLVRQQL S++EF+ +++QR+V+++P I L E Q+ G
Sbjct: 20 DLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHASGE-- 77
Query: 193 PDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVD 372
+E + ++KF Q+ +SKP E +G + PN+ARLRNLTYS PLY D+TKT ++
Sbjct: 78 VEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIK--- 134
Query: 373 PETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
GEE+ ++ +K FIG++P+MLRS +CLL+ L + +L L EC +D GGYFIIN
Sbjct: 135 --EGEEQLQTQH-QKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIIN 188
[49][TOP]
>UniRef100_UPI00005A2A59 PREDICTED: similar to DNA-directed RNA polymerase II 140 kDa
polypeptide (RNA polymerase II subunit 2) (RPB2) isoform
13 n=1 Tax=Canis lupus familiaris RepID=UPI00005A2A59
Length = 1180
Score = 165 bits (418), Expect = 2e-39
Identities = 83/177 (46%), Positives = 121/177 (68%)
Frame = +1
Query: 13 DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDA 192
D+ E W VI++YFDE GLVRQQL S++EF+ +++QR+V+++P I L E Q+ G
Sbjct: 20 DLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHASGE-- 77
Query: 193 PDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVD 372
+E + ++KF Q+ +SKP E +G + PN+ARLRNLTYS PLY D+TKT ++
Sbjct: 78 VEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIK--- 134
Query: 373 PETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
GEE+ ++ +K FIG++P+MLRS +CLL+ L + +L L EC +D GGYFIIN
Sbjct: 135 --EGEEQLQTQH-QKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIIN 188
[50][TOP]
>UniRef100_UPI00005A2A58 PREDICTED: similar to DNA-directed RNA polymerase II 140 kDa
polypeptide (RNA polymerase II subunit 2) (RPB2) isoform
12 n=1 Tax=Canis lupus familiaris RepID=UPI00005A2A58
Length = 1174
Score = 165 bits (418), Expect = 2e-39
Identities = 83/177 (46%), Positives = 121/177 (68%)
Frame = +1
Query: 13 DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDA 192
D+ E W VI++YFDE GLVRQQL S++EF+ +++QR+V+++P I L E Q+ G
Sbjct: 20 DLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHASGE-- 77
Query: 193 PDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVD 372
+E + ++KF Q+ +SKP E +G + PN+ARLRNLTYS PLY D+TKT ++
Sbjct: 78 VEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIK--- 134
Query: 373 PETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
GEE+ ++ +K FIG++P+MLRS +CLL+ L + +L L EC +D GGYFIIN
Sbjct: 135 --EGEEQLQTQH-QKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIIN 188
[51][TOP]
>UniRef100_UPI00005A2A57 PREDICTED: similar to DNA-directed RNA polymerase II 140 kDa
polypeptide (RNA polymerase II subunit 2) (RPB2) isoform
11 n=1 Tax=Canis lupus familiaris RepID=UPI00005A2A57
Length = 1180
Score = 165 bits (418), Expect = 2e-39
Identities = 83/177 (46%), Positives = 121/177 (68%)
Frame = +1
Query: 13 DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDA 192
D+ E W VI++YFDE GLVRQQL S++EF+ +++QR+V+++P I L E Q+ G
Sbjct: 20 DLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHASGE-- 77
Query: 193 PDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVD 372
+E + ++KF Q+ +SKP E +G + PN+ARLRNLTYS PLY D+TKT ++
Sbjct: 78 VEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIK--- 134
Query: 373 PETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
GEE+ ++ +K FIG++P+MLRS +CLL+ L + +L L EC +D GGYFIIN
Sbjct: 135 --EGEEQLQTQH-QKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIIN 188
[52][TOP]
>UniRef100_UPI00005A2A56 PREDICTED: similar to DNA-directed RNA polymerase II 140 kDa
polypeptide (RNA polymerase II subunit 2) (RPB2) isoform
10 n=1 Tax=Canis lupus familiaris RepID=UPI00005A2A56
Length = 1166
Score = 165 bits (418), Expect = 2e-39
Identities = 83/177 (46%), Positives = 121/177 (68%)
Frame = +1
Query: 13 DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDA 192
D+ E W VI++YFDE GLVRQQL S++EF+ +++QR+V+++P I L E Q+ G
Sbjct: 20 DLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHASGE-- 77
Query: 193 PDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVD 372
+E + ++KF Q+ +SKP E +G + PN+ARLRNLTYS PLY D+TKT ++
Sbjct: 78 VEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIK--- 134
Query: 373 PETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
GEE+ ++ +K FIG++P+MLRS +CLL+ L + +L L EC +D GGYFIIN
Sbjct: 135 --EGEEQLQTQH-QKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIIN 188
[53][TOP]
>UniRef100_UPI00005A2A55 PREDICTED: similar to DNA-directed RNA polymerase II 140 kDa
polypeptide (RNA polymerase II subunit 2) (RPB2) isoform
9 n=1 Tax=Canis lupus familiaris RepID=UPI00005A2A55
Length = 1182
Score = 165 bits (418), Expect = 2e-39
Identities = 83/177 (46%), Positives = 121/177 (68%)
Frame = +1
Query: 13 DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDA 192
D+ E W VI++YFDE GLVRQQL S++EF+ +++QR+V+++P I L E Q+ G
Sbjct: 20 DLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHASGE-- 77
Query: 193 PDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVD 372
+E + ++KF Q+ +SKP E +G + PN+ARLRNLTYS PLY D+TKT ++
Sbjct: 78 VEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIK--- 134
Query: 373 PETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
GEE+ ++ +K FIG++P+MLRS +CLL+ L + +L L EC +D GGYFIIN
Sbjct: 135 --EGEEQLQTQH-QKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIIN 188
[54][TOP]
>UniRef100_UPI00005A2A54 PREDICTED: similar to DNA-directed RNA polymerase II 140 kDa
polypeptide (RNA polymerase II subunit 2) (RPB2) isoform
8 n=1 Tax=Canis lupus familiaris RepID=UPI00005A2A54
Length = 1173
Score = 165 bits (418), Expect = 2e-39
Identities = 83/177 (46%), Positives = 121/177 (68%)
Frame = +1
Query: 13 DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDA 192
D+ E W VI++YFDE GLVRQQL S++EF+ +++QR+V+++P I L E Q+ G
Sbjct: 20 DLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHASGE-- 77
Query: 193 PDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVD 372
+E + ++KF Q+ +SKP E +G + PN+ARLRNLTYS PLY D+TKT ++
Sbjct: 78 VEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIK--- 134
Query: 373 PETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
GEE+ ++ +K FIG++P+MLRS +CLL+ L + +L L EC +D GGYFIIN
Sbjct: 135 --EGEEQLQTQH-QKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIIN 188
[55][TOP]
>UniRef100_UPI00005A2A53 PREDICTED: similar to DNA-directed RNA polymerase II 140 kDa
polypeptide (RNA polymerase II subunit 2) (RPB2) isoform
7 n=1 Tax=Canis lupus familiaris RepID=UPI00005A2A53
Length = 1113
Score = 165 bits (418), Expect = 2e-39
Identities = 83/177 (46%), Positives = 121/177 (68%)
Frame = +1
Query: 13 DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDA 192
D+ E W VI++YFDE GLVRQQL S++EF+ +++QR+V+++P I L E Q+ G
Sbjct: 20 DLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHASGE-- 77
Query: 193 PDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVD 372
+E + ++KF Q+ +SKP E +G + PN+ARLRNLTYS PLY D+TKT ++
Sbjct: 78 VEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIK--- 134
Query: 373 PETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
GEE+ ++ +K FIG++P+MLRS +CLL+ L + +L L EC +D GGYFIIN
Sbjct: 135 --EGEEQLQTQH-QKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIIN 188
[56][TOP]
>UniRef100_UPI00005A2A52 PREDICTED: similar to DNA-directed RNA polymerase II 140 kDa
polypeptide (RNA polymerase II subunit 2) (RPB2) isoform
6 n=1 Tax=Canis lupus familiaris RepID=UPI00005A2A52
Length = 1162
Score = 165 bits (418), Expect = 2e-39
Identities = 83/177 (46%), Positives = 121/177 (68%)
Frame = +1
Query: 13 DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDA 192
D+ E W VI++YFDE GLVRQQL S++EF+ +++QR+V+++P I L E Q+ G
Sbjct: 20 DLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHASGE-- 77
Query: 193 PDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVD 372
+E + ++KF Q+ +SKP E +G + PN+ARLRNLTYS PLY D+TKT ++
Sbjct: 78 VEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIK--- 134
Query: 373 PETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
GEE+ ++ +K FIG++P+MLRS +CLL+ L + +L L EC +D GGYFIIN
Sbjct: 135 --EGEEQLQTQH-QKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIIN 188
[57][TOP]
>UniRef100_UPI00005A2A51 PREDICTED: similar to DNA-directed RNA polymerase II 140 kDa
polypeptide (RNA polymerase II subunit 2) (RPB2) isoform
5 n=1 Tax=Canis lupus familiaris RepID=UPI00005A2A51
Length = 932
Score = 165 bits (418), Expect = 2e-39
Identities = 83/177 (46%), Positives = 121/177 (68%)
Frame = +1
Query: 13 DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDA 192
D+ E W VI++YFDE GLVRQQL S++EF+ +++QR+V+++P I L E Q+ G
Sbjct: 20 DLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHASGE-- 77
Query: 193 PDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVD 372
+E + ++KF Q+ +SKP E +G + PN+ARLRNLTYS PLY D+TKT ++
Sbjct: 78 VEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIK--- 134
Query: 373 PETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
GEE+ ++ +K FIG++P+MLRS +CLL+ L + +L L EC +D GGYFIIN
Sbjct: 135 --EGEEQLQTQH-QKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIIN 188
[58][TOP]
>UniRef100_UPI00005A2A4F PREDICTED: similar to polymerase (RNA) II (DNA directed)
polypeptide B isoform 3 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A2A4F
Length = 193
Score = 165 bits (418), Expect = 2e-39
Identities = 83/177 (46%), Positives = 121/177 (68%)
Frame = +1
Query: 13 DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDA 192
D+ E W VI++YFDE GLVRQQL S++EF+ +++QR+V+++P I L E Q+ G
Sbjct: 20 DLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHASGE-- 77
Query: 193 PDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVD 372
+E + ++KF Q+ +SKP E +G + PN+ARLRNLTYS PLY D+TKT ++
Sbjct: 78 VEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIK--- 134
Query: 373 PETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
GEE+ ++ +K FIG++P+MLRS +CLL+ L + +L L EC +D GGYFIIN
Sbjct: 135 --EGEEQLQTQH-QKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIIN 188
[59][TOP]
>UniRef100_UPI0000EB23D9 DNA-directed RNA polymerase II subunit RPB2 (EC 2.7.7.6) (RNA
polymerase II subunit B2) (DNA-directed RNA polymerase
II subunit B) (RNA polymerase II subunit 2)
(DNA-directed RNA polymerase II 140 kDa polypeptide).
n=1 Tax=Canis lupus familiaris RepID=UPI0000EB23D9
Length = 1176
Score = 165 bits (418), Expect = 2e-39
Identities = 83/177 (46%), Positives = 121/177 (68%)
Frame = +1
Query: 13 DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDA 192
D+ E W VI++YFDE GLVRQQL S++EF+ +++QR+V+++P I L E Q+ G
Sbjct: 20 DLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHASGE-- 77
Query: 193 PDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVD 372
+E + ++KF Q+ +SKP E +G + PN+ARLRNLTYS PLY D+TKT ++
Sbjct: 78 VEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIK--- 134
Query: 373 PETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
GEE+ ++ +K FIG++P+MLRS +CLL+ L + +L L EC +D GGYFIIN
Sbjct: 135 --EGEEQLQTQH-QKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIIN 188
[60][TOP]
>UniRef100_UPI0000F3357E UPI0000F3357E related cluster n=1 Tax=Bos taurus
RepID=UPI0000F3357E
Length = 1177
Score = 165 bits (418), Expect = 2e-39
Identities = 83/177 (46%), Positives = 121/177 (68%)
Frame = +1
Query: 13 DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDA 192
D+ E W VI++YFDE GLVRQQL S++EF+ +++QR+V+++P I L E Q+ G
Sbjct: 21 DLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHASGE-- 78
Query: 193 PDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVD 372
+E + ++KF Q+ +SKP E +G + PN+ARLRNLTYS PLY D+TKT ++
Sbjct: 79 VEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIK--- 135
Query: 373 PETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
GEE+ ++ +K FIG++P+MLRS +CLL+ L + +L L EC +D GGYFIIN
Sbjct: 136 --EGEEQLQTQH-QKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIIN 189
[61][TOP]
>UniRef100_A5PJW8 DNA-directed RNA polymerase n=1 Tax=Bos taurus RepID=A5PJW8_BOVIN
Length = 1174
Score = 165 bits (418), Expect = 2e-39
Identities = 83/177 (46%), Positives = 121/177 (68%)
Frame = +1
Query: 13 DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDA 192
D+ E W VI++YFDE GLVRQQL S++EF+ +++QR+V+++P I L E Q+ G
Sbjct: 20 DLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHASGE-- 77
Query: 193 PDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVD 372
+E + ++KF Q+ +SKP E +G + PN+ARLRNLTYS PLY D+TKT ++
Sbjct: 78 VEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIK--- 134
Query: 373 PETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
GEE+ ++ +K FIG++P+MLRS +CLL+ L + +L L EC +D GGYFIIN
Sbjct: 135 --EGEEQLQTQH-QKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIIN 188
[62][TOP]
>UniRef100_B0WKE9 DNA-directed RNA polymerase n=1 Tax=Culex quinquefasciatus
RepID=B0WKE9_CULQU
Length = 1176
Score = 165 bits (418), Expect = 2e-39
Identities = 83/173 (47%), Positives = 114/173 (65%)
Frame = +1
Query: 25 EDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAPDEN 204
E W VINAYFDE GLVRQQL S++EF+ +++QR+V++SP I L E Q+ G +
Sbjct: 25 EACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPAIELTAEAQHTTG--DIETP 82
Query: 205 TKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVDPETG 384
T+ V+KF Q+ +SKP E +G + PN+ARLRNLTYS PLY D+TKT +
Sbjct: 83 TRYVLKFDQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTKI------VE 136
Query: 385 EEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
++ + +K FIG++P+MLRS +CLL L + +L L EC +D GGYFIIN
Sbjct: 137 GQDPVETQHQKTFIGKIPIMLRSTYCLLSQLTDRDLTELNECPLDPGGYFIIN 189
[63][TOP]
>UniRef100_A8MW88 DNA-directed RNA polymerase (Fragment) n=1 Tax=Homo sapiens
RepID=A8MW88_HUMAN
Length = 1173
Score = 165 bits (418), Expect = 2e-39
Identities = 83/177 (46%), Positives = 121/177 (68%)
Frame = +1
Query: 13 DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDA 192
D+ E W VI++YFDE GLVRQQL S++EF+ +++QR+V+++P I L E Q+ G
Sbjct: 19 DLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHASGE-- 76
Query: 193 PDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVD 372
+E + ++KF Q+ +SKP E +G + PN+ARLRNLTYS PLY D+TKT ++
Sbjct: 77 VEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIK--- 133
Query: 373 PETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
GEE+ ++ +K FIG++P+MLRS +CLL+ L + +L L EC +D GGYFIIN
Sbjct: 134 --EGEEQLQTQH-QKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIIN 187
[64][TOP]
>UniRef100_Q6RYH8 DNA-directed RNA polymerase (Fragment) n=1 Tax=Filobasidiella
neoformans RepID=Q6RYH8_CRYNE
Length = 1114
Score = 165 bits (418), Expect = 2e-39
Identities = 90/191 (47%), Positives = 119/191 (62%), Gaps = 11/191 (5%)
Frame = +1
Query: 4 NDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPG 183
+D IS ED W V N++F+E GLVRQQL+S+NEF+ TMQ +VD+ + L QY
Sbjct: 36 DDEPISQEDYWTVTNSFFEEKGLVRQQLESFNEFIETTMQEIVDDHSRLTLDQFTQYTGV 95
Query: 184 RDAPDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVR 363
A DE + I FGQ+ +++ N TE +G L+P +ARLRNLTYS PLY D+ K T+
Sbjct: 96 --AGDETRRYEISFGQIYLARVNHTEMDGRTNMLFPQEARLRNLTYSAPLYVDIKKRTLT 153
Query: 364 L--VD--------PETGEE-EATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGEC 510
VD P G++ E E EK IG+VPVM+RS FCLLH L + + + +GEC
Sbjct: 154 ASGVDDPVEADWQPAVGDDGEVEGAEEEKTSIGKVPVMVRSNFCLLHGLPDDQCHEIGEC 213
Query: 511 HVDQGGYFIIN 543
DQGGYFII+
Sbjct: 214 PYDQGGYFIIS 224
[65][TOP]
>UniRef100_Q8CFI7 DNA-directed RNA polymerase II subunit RPB2 n=1 Tax=Mus musculus
RepID=RPB2_MOUSE
Length = 1174
Score = 165 bits (418), Expect = 2e-39
Identities = 83/177 (46%), Positives = 121/177 (68%)
Frame = +1
Query: 13 DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDA 192
D+ E W VI++YFDE GLVRQQL S++EF+ +++QR+V+++P I L E Q+ G
Sbjct: 20 DLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHASGE-- 77
Query: 193 PDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVD 372
+E + ++KF Q+ +SKP E +G + PN+ARLRNLTYS PLY D+TKT ++
Sbjct: 78 VEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIK--- 134
Query: 373 PETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
GEE+ ++ +K FIG++P+MLRS +CLL+ L + +L L EC +D GGYFIIN
Sbjct: 135 --EGEEQLQTQH-QKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIIN 188
[66][TOP]
>UniRef100_Q10578 DNA-directed RNA polymerase II subunit RPB2 n=1 Tax=Caenorhabditis
elegans RepID=RPB2_CAEEL
Length = 1193
Score = 165 bits (418), Expect = 2e-39
Identities = 84/178 (47%), Positives = 120/178 (67%)
Frame = +1
Query: 10 ADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRD 189
A+ E W VI+AYFDE GLVRQQL S++EFV + +QR+V++SP + L E+Q++ G D
Sbjct: 26 AEAWQEACWVVISAYFDEKGLVRQQLDSFDEFVQMNVQRIVEDSPPVELQSENQHL-GTD 84
Query: 190 APDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLV 369
+ K +KF Q+ +SKP E +G + PN+ARLRNLTY++PLY D+TK R
Sbjct: 85 M-ENPAKFSLKFNQIYLSKPTHWEKDGAPMPMMPNEARLRNLTYASPLYVDITKVVTR-- 141
Query: 370 DPETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
++ AT + +KVF+G+VPVMLRS +C+L N+ + +L L EC +D GGYF+IN
Sbjct: 142 -----DDSATEKVYDKVFVGKVPVMLRSSYCMLSNMTDRDLTELNECPLDPGGYFVIN 194
[67][TOP]
>UniRef100_Q7QAK7 DNA-directed RNA polymerase (Fragment) n=1 Tax=Anopheles gambiae
RepID=Q7QAK7_ANOGA
Length = 1175
Score = 165 bits (417), Expect = 2e-39
Identities = 84/173 (48%), Positives = 117/173 (67%)
Frame = +1
Query: 25 EDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAPDEN 204
E W VINAYFDE GLVRQQL S++EF+ +++QR+V++SP I L E Q+ G +
Sbjct: 24 EACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPAIELTAEAQHSSGE--IENP 81
Query: 205 TKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVDPETG 384
T+ ++KF Q+ +SKP E +G + PN+ARLRNLTYS PLY D+TKT +LV+
Sbjct: 82 TRYLLKFDQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKT--KLVE---- 135
Query: 385 EEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
++ + +K FIG++P+MLRS +CLL L + +L L EC +D GGYFIIN
Sbjct: 136 GQDPVETQHQKTFIGKIPIMLRSTYCLLSQLTDRDLTELNECPLDPGGYFIIN 188
[68][TOP]
>UniRef100_B3S2W9 DNA-directed RNA polymerase n=1 Tax=Trichoplax adhaerens
RepID=B3S2W9_TRIAD
Length = 1196
Score = 165 bits (417), Expect = 2e-39
Identities = 83/179 (46%), Positives = 116/179 (64%)
Frame = +1
Query: 7 DADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGR 186
+ D+ E W VINAYF+E GLVRQQL S++EF+ +++QR+V++SP I + E Q+
Sbjct: 20 ETDLWQEACWVVINAYFNEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDIQGETQHHSSE 79
Query: 187 DAPDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRL 366
+ ++ + +KF Q+ +SKP F E +G + NQARLRNLTYS PLY D+TKT +
Sbjct: 80 E--QQSVRYQLKFDQIYLSKPTFWEKDGSPTPMMSNQARLRNLTYSAPLYVDITKTITK- 136
Query: 367 VDPETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
G E + K FIG++P+MLRS +CLLHN+ + L L EC +D GGYFIIN
Sbjct: 137 -----GNNEPEVKCHPKTFIGKIPIMLRSTYCLLHNMADHALTELNECPLDVGGYFIIN 190
[69][TOP]
>UniRef100_UPI0000221AC5 hypothetical protein CBG18197 n=1 Tax=Caenorhabditis briggsae AF16
RepID=UPI0000221AC5
Length = 1194
Score = 164 bits (416), Expect = 3e-39
Identities = 84/177 (47%), Positives = 117/177 (66%)
Frame = +1
Query: 13 DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDA 192
D E W VI+AYFDE GLVRQQL S++EFV + +QR+V++SP + L E+Q++ G D
Sbjct: 28 DAWQEACWVVISAYFDEKGLVRQQLDSFDEFVQMNVQRIVEDSPPVELQSENQHL-GNDM 86
Query: 193 PDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVD 372
+ K +KF Q+ +SKP E +G + PN+ARLRNLTY++PLY D+TK R
Sbjct: 87 -ENPAKFSLKFNQIYLSKPTHWEKDGAPMPMMPNEARLRNLTYASPLYVDITKVVTR--- 142
Query: 373 PETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
+E + EKVF+G+VPVMLRS +C+L N+ + +L L EC +D GGYF+IN
Sbjct: 143 ----DESVNEKVYEKVFVGKVPVMLRSSYCMLSNMTDRDLTELNECPLDPGGYFVIN 195
[70][TOP]
>UniRef100_Q5CY45 DNA-directed RNA polymerase n=1 Tax=Cryptosporidium parvum Iowa II
RepID=Q5CY45_CRYPV
Length = 1177
Score = 164 bits (416), Expect = 3e-39
Identities = 81/178 (45%), Positives = 115/178 (64%), Gaps = 1/178 (0%)
Frame = +1
Query: 13 DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDA 192
+I ED+W +I YF + GLV QQL+S+N+F+ +Q +VDE P I++ P+ QY P
Sbjct: 15 EIQQEDSWALIGTYFRDRGLVNQQLESFNDFIMYKLQEIVDEHPPIIITPQSQYRPDEQI 74
Query: 193 PDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVD 372
D + V+KFGQL +S+P+ E G A L+PN+ARLRNLTYS+P++ D + +L D
Sbjct: 75 -DTKVRYVLKFGQLSLSRPSVEEREGVARGLWPNEARLRNLTYSSPVFVDAEQKVYKLED 133
Query: 373 PETGEEEATSEEP-EKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
G E E ++ + ++P+MLRS +C HN++E EL S GEC DQGGYFIIN
Sbjct: 134 --DGSETLVYETVYSRLPLAKIPIMLRSEYCWTHNISERELQSAGECVYDQGGYFIIN 189
[71][TOP]
>UniRef100_Q5CN11 DNA-directed RNA polymerase II second largest chain n=1
Tax=Cryptosporidium hominis RepID=Q5CN11_CRYHO
Length = 733
Score = 164 bits (416), Expect = 3e-39
Identities = 81/178 (45%), Positives = 115/178 (64%), Gaps = 1/178 (0%)
Frame = +1
Query: 13 DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDA 192
+I ED+W +I YF + GLV QQL+S+N+F+ +Q +VDE P I++ P+ QY P
Sbjct: 15 EIQQEDSWALIGTYFRDRGLVNQQLESFNDFIMYKLQEIVDEHPPIIITPQSQYRPDEQI 74
Query: 193 PDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVD 372
D + V+KFGQL +S+P+ E G A L+PN+ARLRNLTYS+P++ D + +L D
Sbjct: 75 -DTKVRYVLKFGQLSLSRPSVEEREGVARGLWPNEARLRNLTYSSPVFVDAEQKVYKLED 133
Query: 373 PETGEEEATSEEP-EKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
G E E ++ + ++P+MLRS +C HN++E EL S GEC DQGGYFIIN
Sbjct: 134 --DGSETLVYETVYSRLPLAKIPIMLRSEYCWTHNISERELQSAGECVYDQGGYFIIN 189
[72][TOP]
>UniRef100_UPI0001B09250 DNA directed RNA polymerase II polypeptide B n=1 Tax=Danio rerio
RepID=UPI0001B09250
Length = 1174
Score = 164 bits (415), Expect = 4e-39
Identities = 83/177 (46%), Positives = 120/177 (67%)
Frame = +1
Query: 13 DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDA 192
D+ E W VI++YFDE GLVRQQL S++EF+ +++QR+V+++P I L E Q+ G
Sbjct: 20 DLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHTSGE-- 77
Query: 193 PDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVD 372
+E + ++KF Q+ +SKP E +G + PN+ARLRNLTYS PLY D+TKT ++
Sbjct: 78 VEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTIIK--- 134
Query: 373 PETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
GEE+ ++ +K FIG++P+MLRS +CLL L + +L L EC +D GGYFIIN
Sbjct: 135 --DGEEQQQTQH-QKTFIGKIPIMLRSTYCLLSGLTDRDLCELNECPLDPGGYFIIN 188
[73][TOP]
>UniRef100_UPI000194C2A3 PREDICTED: polymerase (RNA) II (DNA directed) polypeptide B, 140kDa
n=1 Tax=Taeniopygia guttata RepID=UPI000194C2A3
Length = 1174
Score = 164 bits (415), Expect = 4e-39
Identities = 82/177 (46%), Positives = 121/177 (68%)
Frame = +1
Query: 13 DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDA 192
D+ E W VI++YFDE GLVRQQL S++EF+ +++QR+V+++P I L E Q+ G
Sbjct: 20 DLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHASGE-- 77
Query: 193 PDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVD 372
+E + ++KF Q+ +SKP E +G + PN+ARLRNLTYS PLY D+TKT ++
Sbjct: 78 VEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIK--- 134
Query: 373 PETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
GE++ ++ +K FIG++P+MLRS +CLL+ L + +L L EC +D GGYFIIN
Sbjct: 135 --EGEDQLQTQH-QKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIIN 188
[74][TOP]
>UniRef100_UPI0001926137 PREDICTED: similar to predicted protein n=1 Tax=Hydra
magnipapillata RepID=UPI0001926137
Length = 1426
Score = 164 bits (415), Expect = 4e-39
Identities = 84/173 (48%), Positives = 118/173 (68%)
Frame = +1
Query: 25 EDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAPDEN 204
E W VI++YF+E GLVRQQL S++EF+ +++QR+V+ESP I L E QY + +E
Sbjct: 28 EACWTVISSYFEEKGLVRQQLDSFDEFIQMSVQRIVEESPPIELQAETQYT--ENEIEEP 85
Query: 205 TKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVDPETG 384
T+ +KF Q+ +SKP E +G + PN+ARLRNLTYS PLY D++KT R +G
Sbjct: 86 TRYQLKFEQIYLSKPTHWEKDGAPKPMMPNEARLRNLTYSAPLYVDISKTITR-----SG 140
Query: 385 EEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
+E T EE K++IG++P+MLRS +C+L L + +L L EC +D GGYFIIN
Sbjct: 141 QEPET-EEHSKIYIGKIPIMLRSTYCVLSGLVDRDLTELNECPLDPGGYFIIN 192
[75][TOP]
>UniRef100_UPI0000ECC4A8 polymerase (RNA) II (DNA directed) polypeptide B, 140kDa n=1
Tax=Gallus gallus RepID=UPI0000ECC4A8
Length = 1176
Score = 164 bits (415), Expect = 4e-39
Identities = 82/177 (46%), Positives = 121/177 (68%)
Frame = +1
Query: 13 DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDA 192
D+ E W VI++YFDE GLVRQQL S++EF+ +++QR+V+++P I L E Q+ G
Sbjct: 21 DLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHATGE-- 78
Query: 193 PDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVD 372
+E + ++KF Q+ +SKP E +G + PN+ARLRNLTYS PLY D+TKT ++
Sbjct: 79 VEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIK--- 135
Query: 373 PETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
GE++ ++ +K FIG++P+MLRS +CLL+ L + +L L EC +D GGYFIIN
Sbjct: 136 --EGEDQLQTQH-QKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIIN 189
[76][TOP]
>UniRef100_UPI00003AD7E4 polymerase (RNA) II (DNA directed) polypeptide B, 140kDa n=1
Tax=Gallus gallus RepID=UPI00003AD7E4
Length = 1174
Score = 164 bits (415), Expect = 4e-39
Identities = 82/177 (46%), Positives = 121/177 (68%)
Frame = +1
Query: 13 DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDA 192
D+ E W VI++YFDE GLVRQQL S++EF+ +++QR+V+++P I L E Q+ G
Sbjct: 20 DLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHATGE-- 77
Query: 193 PDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVD 372
+E + ++KF Q+ +SKP E +G + PN+ARLRNLTYS PLY D+TKT ++
Sbjct: 78 VEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIK--- 134
Query: 373 PETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
GE++ ++ +K FIG++P+MLRS +CLL+ L + +L L EC +D GGYFIIN
Sbjct: 135 --EGEDQLQTQH-QKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIIN 188
[77][TOP]
>UniRef100_Q6DRH1 RNA polymerase II subunit B (Fragment) n=1 Tax=Danio rerio
RepID=Q6DRH1_DANRE
Length = 562
Score = 164 bits (415), Expect = 4e-39
Identities = 83/177 (46%), Positives = 120/177 (67%)
Frame = +1
Query: 13 DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDA 192
D+ E W VI++YFDE GLVRQQL S++EF+ +++QR+V+++P I L E Q+ G
Sbjct: 20 DLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHTSGE-- 77
Query: 193 PDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVD 372
+E + ++KF Q+ +SKP E +G + PN+ARLRNLTYS PLY D+TKT ++
Sbjct: 78 VEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTIIK--- 134
Query: 373 PETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
GEE+ ++ +K FIG++P+MLRS +CLL L + +L L EC +D GGYFIIN
Sbjct: 135 --DGEEQQQTQH-QKTFIGKIPIMLRSTYCLLSGLTDRDLCELNECPLDPGGYFIIN 188
[78][TOP]
>UniRef100_Q5ZMN9 DNA-directed RNA polymerase n=1 Tax=Gallus gallus
RepID=Q5ZMN9_CHICK
Length = 1174
Score = 164 bits (415), Expect = 4e-39
Identities = 82/177 (46%), Positives = 121/177 (68%)
Frame = +1
Query: 13 DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDA 192
D+ E W VI++YFDE GLVRQQL S++EF+ +++QR+V+++P I L E Q+ G
Sbjct: 20 DLWQEARWIVISSYFDEEGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHATGE-- 77
Query: 193 PDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVD 372
+E + ++KF Q+ +SKP E +G + PN+ARLRNLTYS PLY D+TKT ++
Sbjct: 78 VEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIK--- 134
Query: 373 PETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
GE++ ++ +K FIG++P+MLRS +CLL+ L + +L L EC +D GGYFIIN
Sbjct: 135 --EGEDQLQTQH-QKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIIN 188
[79][TOP]
>UniRef100_Q504C7 Polr2b protein n=1 Tax=Danio rerio RepID=Q504C7_DANRE
Length = 366
Score = 164 bits (415), Expect = 4e-39
Identities = 83/177 (46%), Positives = 120/177 (67%)
Frame = +1
Query: 13 DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDA 192
D+ E W VI++YFDE GLVRQQL S++EF+ +++QR+V+++P I L E Q+ G
Sbjct: 20 DLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHTSGE-- 77
Query: 193 PDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVD 372
+E + ++KF Q+ +SKP E +G + PN+ARLRNLTYS PLY D+TKT ++
Sbjct: 78 VEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTIIK--- 134
Query: 373 PETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
GEE+ ++ +K FIG++P+MLRS +CLL L + +L L EC +D GGYFIIN
Sbjct: 135 --DGEEQQQTQH-QKTFIGKIPIMLRSTYCLLSGLTDRDLCELNECPLDPGGYFIIN 188
[80][TOP]
>UniRef100_Q02061 DNA-directed RNA polymerase II subunit RPB2 n=1
Tax=Schizosaccharomyces pombe RepID=RPB2_SCHPO
Length = 1210
Score = 164 bits (414), Expect = 5e-39
Identities = 87/183 (47%), Positives = 118/183 (64%), Gaps = 7/183 (3%)
Frame = +1
Query: 16 ISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAP 195
++ ED W VI+++F+E L RQQL S++EFV TMQ +VD+ + L DQY A
Sbjct: 12 LTQEDCWTVISSFFEETSLARQQLFSFDEFVQNTMQEIVDDDSTLTL---DQYAQHTGAQ 68
Query: 196 DENTK-VVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVD 372
+ T+ I FGQ+ +S+P TE +G T++P +ARLRNLTYS+PLY D+ K + D
Sbjct: 69 GDVTRRYEINFGQIYLSRPTMTEADGSTTTMFPQEARLRNLTYSSPLYVDMRKKVMVAAD 128
Query: 373 PET--GEEE----ATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYF 534
GEEE EEP KVFIG++P+MLRS FC+L+ +++ EL L EC DQGGYF
Sbjct: 129 SNVPIGEEEWLVEEEDEEPSKVFIGKIPIMLRSTFCILNGVSDSELYDLNECPYDQGGYF 188
Query: 535 IIN 543
IIN
Sbjct: 189 IIN 191
[81][TOP]
>UniRef100_C0HA74 DNA-directed RNA polymerase n=1 Tax=Salmo salar RepID=C0HA74_SALSA
Length = 1174
Score = 162 bits (409), Expect = 2e-38
Identities = 81/177 (45%), Positives = 120/177 (67%)
Frame = +1
Query: 13 DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDA 192
D+ E W VI++YFDE GLVRQQL S++EF+ +++QR+V+++P I L E Q+ G
Sbjct: 20 DLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHTSGE-- 77
Query: 193 PDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVD 372
++ + ++KF Q+ +SKP E +G + PN+ARLRNLTYS PLY D+TKT ++
Sbjct: 78 VEDPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTIIK--- 134
Query: 373 PETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
GE++ ++ +K FIG++P+MLRS +CLL L + +L L EC +D GGYFIIN
Sbjct: 135 --EGEDQLQTQH-QKTFIGKIPIMLRSTYCLLSGLTDRDLCELNECPLDPGGYFIIN 188
[82][TOP]
>UniRef100_Q1L5A7 RNA polymerase II second largest subunit (Fragment) n=1
Tax=Spinacia oleracea RepID=Q1L5A7_SPIOL
Length = 495
Score = 160 bits (406), Expect = 4e-38
Identities = 83/155 (53%), Positives = 104/155 (67%)
Frame = +1
Query: 79 QQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFT 258
QQL S++EF+ TMQ +VDES DI + PE Q+ PG + T IKFGQ+ +SKP T
Sbjct: 1 QQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSDFAETIYKIKFGQIYLSKPMMT 60
Query: 259 ENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVDPETGEEEATSEEPEKVFIGRVP 438
E++GE TL+P ARLRNLTYS PLY DVTK +R G+E + E KVFIG+VP
Sbjct: 61 ESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIR--KGHDGDELTEAHELPKVFIGKVP 118
Query: 439 VMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
+MLRS +C L+ +E +L LGEC DQGG FIIN
Sbjct: 119 IMLRSSYCTLYQNSEKDLTELGECPYDQGGCFIIN 153
[83][TOP]
>UniRef100_B4R0H5 DNA-directed RNA polymerase n=1 Tax=Drosophila simulans
RepID=B4R0H5_DROSI
Length = 1176
Score = 160 bits (406), Expect = 4e-38
Identities = 84/174 (48%), Positives = 113/174 (64%), Gaps = 1/174 (0%)
Frame = +1
Query: 25 EDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAPDEN 204
E W VINAYFDE GLVRQQL S++EF+ +++QR+V++SP I L E Q+ G +
Sbjct: 25 EACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPAIELQAEAQHTSGE--VETP 82
Query: 205 TKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKT-TVRLVDPET 381
+ +KF Q+ +SKP E +G + PN+ARLRNLTYS PLY D+TKT V +DP
Sbjct: 83 PRFSLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTKNVEGLDP-- 140
Query: 382 GEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
+ +K FIG++P+MLRS +CLL L + +L L EC +D GGYFIIN
Sbjct: 141 -----VETQHQKTFIGKIPIMLRSTYCLLSQLTDRDLTELNECPLDPGGYFIIN 189
[84][TOP]
>UniRef100_B4PTC0 DNA-directed RNA polymerase n=1 Tax=Drosophila yakuba
RepID=B4PTC0_DROYA
Length = 1176
Score = 160 bits (406), Expect = 4e-38
Identities = 84/174 (48%), Positives = 113/174 (64%), Gaps = 1/174 (0%)
Frame = +1
Query: 25 EDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAPDEN 204
E W VINAYFDE GLVRQQL S++EF+ +++QR+V++SP I L E Q+ G +
Sbjct: 25 EACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPAIELQAEAQHTSGE--VETP 82
Query: 205 TKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKT-TVRLVDPET 381
+ +KF Q+ +SKP E +G + PN+ARLRNLTYS PLY D+TKT V +DP
Sbjct: 83 PRFSLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTKNVEGLDP-- 140
Query: 382 GEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
+ +K FIG++P+MLRS +CLL L + +L L EC +D GGYFIIN
Sbjct: 141 -----VETQHQKTFIGKIPIMLRSTYCLLSQLTDRDLTELNECPLDPGGYFIIN 189
[85][TOP]
>UniRef100_B4N9I3 DNA-directed RNA polymerase n=1 Tax=Drosophila willistoni
RepID=B4N9I3_DROWI
Length = 1176
Score = 160 bits (406), Expect = 4e-38
Identities = 84/174 (48%), Positives = 113/174 (64%), Gaps = 1/174 (0%)
Frame = +1
Query: 25 EDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAPDEN 204
E W VINAYFDE GLVRQQL S++EF+ +++QR+V++SP I L E Q+ G +
Sbjct: 25 EACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPAIELQAEAQHTSGE--VETP 82
Query: 205 TKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKT-TVRLVDPET 381
+ +KF Q+ +SKP E +G + PN+ARLRNLTYS PLY D+TKT V +DP
Sbjct: 83 PRFSLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTKNVEGLDP-- 140
Query: 382 GEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
+ +K FIG++P+MLRS +CLL L + +L L EC +D GGYFIIN
Sbjct: 141 -----VETQHQKTFIGKIPIMLRSTYCLLSQLTDRDLTELNECPLDPGGYFIIN 189
[86][TOP]
>UniRef100_B4M040 DNA-directed RNA polymerase n=1 Tax=Drosophila virilis
RepID=B4M040_DROVI
Length = 1176
Score = 160 bits (406), Expect = 4e-38
Identities = 84/174 (48%), Positives = 113/174 (64%), Gaps = 1/174 (0%)
Frame = +1
Query: 25 EDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAPDEN 204
E W VINAYFDE GLVRQQL S++EF+ +++QR+V++SP I L E Q+ G +
Sbjct: 25 EACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPAIELQAEAQHTSGE--VETP 82
Query: 205 TKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKT-TVRLVDPET 381
+ +KF Q+ +SKP E +G + PN+ARLRNLTYS PLY D+TKT V +DP
Sbjct: 83 PRFSLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTKNVEGMDP-- 140
Query: 382 GEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
+ +K FIG++P+MLRS +CLL L + +L L EC +D GGYFIIN
Sbjct: 141 -----VETQHQKTFIGKIPIMLRSTYCLLSQLTDRDLTELNECPLDPGGYFIIN 189
[87][TOP]
>UniRef100_B4KDW5 DNA-directed RNA polymerase n=1 Tax=Drosophila mojavensis
RepID=B4KDW5_DROMO
Length = 1176
Score = 160 bits (406), Expect = 4e-38
Identities = 84/174 (48%), Positives = 113/174 (64%), Gaps = 1/174 (0%)
Frame = +1
Query: 25 EDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAPDEN 204
E W VINAYFDE GLVRQQL S++EF+ +++QR+V++SP I L E Q+ G +
Sbjct: 25 EACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPAIELQAEAQHTSGE--VETP 82
Query: 205 TKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKT-TVRLVDPET 381
+ +KF Q+ +SKP E +G + PN+ARLRNLTYS PLY D+TKT V +DP
Sbjct: 83 PRFSLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTKNVEGMDP-- 140
Query: 382 GEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
+ +K FIG++P+MLRS +CLL L + +L L EC +D GGYFIIN
Sbjct: 141 -----VETQHQKTFIGKIPIMLRSTYCLLSQLTDRDLTELNECPLDPGGYFIIN 189
[88][TOP]
>UniRef100_B4K015 DNA-directed RNA polymerase n=1 Tax=Drosophila grimshawi
RepID=B4K015_DROGR
Length = 1175
Score = 160 bits (406), Expect = 4e-38
Identities = 84/174 (48%), Positives = 113/174 (64%), Gaps = 1/174 (0%)
Frame = +1
Query: 25 EDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAPDEN 204
E W VINAYFDE GLVRQQL S++EF+ +++QR+V++SP I L E Q+ G +
Sbjct: 24 EACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPAIELQAEAQHTSGE--VETP 81
Query: 205 TKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKT-TVRLVDPET 381
+ +KF Q+ +SKP E +G + PN+ARLRNLTYS PLY D+TKT V +DP
Sbjct: 82 PRFSLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTKNVEGLDP-- 139
Query: 382 GEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
+ +K FIG++P+MLRS +CLL L + +L L EC +D GGYFIIN
Sbjct: 140 -----VETQHQKTFIGKIPIMLRSTYCLLSQLTDRDLTELNECPLDPGGYFIIN 188
[89][TOP]
>UniRef100_Q298X6 DNA-directed RNA polymerase n=2 Tax=pseudoobscura subgroup
RepID=Q298X6_DROPS
Length = 1176
Score = 160 bits (406), Expect = 4e-38
Identities = 84/174 (48%), Positives = 113/174 (64%), Gaps = 1/174 (0%)
Frame = +1
Query: 25 EDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAPDEN 204
E W VINAYFDE GLVRQQL S++EF+ +++QR+V++SP I L E Q+ G +
Sbjct: 25 EACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPAIELQAEAQHTSGE--VETP 82
Query: 205 TKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKT-TVRLVDPET 381
+ +KF Q+ +SKP E +G + PN+ARLRNLTYS PLY D+TKT V +DP
Sbjct: 83 PRFSLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTKNVEGLDP-- 140
Query: 382 GEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
+ +K FIG++P+MLRS +CLL L + +L L EC +D GGYFIIN
Sbjct: 141 -----VETQHQKTFIGKIPIMLRSTYCLLSQLTDRDLTELNECPLDPGGYFIIN 189
[90][TOP]
>UniRef100_B3P0M0 DNA-directed RNA polymerase n=1 Tax=Drosophila erecta
RepID=B3P0M0_DROER
Length = 1176
Score = 160 bits (406), Expect = 4e-38
Identities = 84/174 (48%), Positives = 113/174 (64%), Gaps = 1/174 (0%)
Frame = +1
Query: 25 EDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAPDEN 204
E W VINAYFDE GLVRQQL S++EF+ +++QR+V++SP I L E Q+ G +
Sbjct: 25 EACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPAIELQAEAQHTSGE--VETP 82
Query: 205 TKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKT-TVRLVDPET 381
+ +KF Q+ +SKP E +G + PN+ARLRNLTYS PLY D+TKT V +DP
Sbjct: 83 PRFSLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTKNVEGLDP-- 140
Query: 382 GEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
+ +K FIG++P+MLRS +CLL L + +L L EC +D GGYFIIN
Sbjct: 141 -----VETQHQKTFIGKIPIMLRSTYCLLSQLTDRDLTELNECPLDPGGYFIIN 189
[91][TOP]
>UniRef100_P08266 DNA-directed RNA polymerase II subunit RPB2 n=2 Tax=melanogaster
subgroup RepID=RPB2_DROME
Length = 1176
Score = 160 bits (406), Expect = 4e-38
Identities = 84/174 (48%), Positives = 113/174 (64%), Gaps = 1/174 (0%)
Frame = +1
Query: 25 EDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAPDEN 204
E W VINAYFDE GLVRQQL S++EF+ +++QR+V++SP I L E Q+ G +
Sbjct: 25 EACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPAIELQAEAQHTSGE--VETP 82
Query: 205 TKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKT-TVRLVDPET 381
+ +KF Q+ +SKP E +G + PN+ARLRNLTYS PLY D+TKT V +DP
Sbjct: 83 PRFSLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTKNVEGLDP-- 140
Query: 382 GEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
+ +K FIG++P+MLRS +CLL L + +L L EC +D GGYFIIN
Sbjct: 141 -----VETQHQKTFIGKIPIMLRSTYCLLSQLTDRDLTELNECPLDPGGYFIIN 189
[92][TOP]
>UniRef100_UPI000180B7B7 PREDICTED: similar to POLR2B protein n=1 Tax=Ciona intestinalis
RepID=UPI000180B7B7
Length = 1173
Score = 160 bits (405), Expect = 6e-38
Identities = 81/173 (46%), Positives = 114/173 (65%)
Frame = +1
Query: 25 EDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAPDEN 204
E W VI++YFDE GLVRQQL S++EF+ +++QR+V+++P I L E Q+ +
Sbjct: 24 EACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPIIELQAESQHTSTEVSVP-- 81
Query: 205 TKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVDPETG 384
TK ++KF Q+ +SKP E +G + PN+ARLRNLTYS PLY D+TKT V+
Sbjct: 82 TKYLLKFEQIYLSKPTHWEKDGAPSPMMPNEARLRNLTYSAPLYVDITKTVVK------H 135
Query: 385 EEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
E + + +K FIG++P+MLRS +CLL L + +L L EC +D GGYFIIN
Sbjct: 136 EAQPVETQHQKTFIGKIPIMLRSTYCLLSGLTDRDLTELNECPLDPGGYFIIN 188
[93][TOP]
>UniRef100_B6AET6 DNA-directed RNA polymerase n=1 Tax=Cryptosporidium muris RN66
RepID=B6AET6_9CRYT
Length = 1184
Score = 160 bits (405), Expect = 6e-38
Identities = 79/180 (43%), Positives = 118/180 (65%), Gaps = 1/180 (0%)
Frame = +1
Query: 7 DADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGR 186
D ++ ED+W +I YF + GLV QQL+S+N+F+ +Q +VDE P IV+IP+ QY P
Sbjct: 7 DDEVQQEDSWALIGTYFRDRGLVSQQLESFNDFIMYKLQEIVDEHPPIVIIPQPQYRPDE 66
Query: 187 DAPDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRL 366
D + + V+KFGQL +S+P+ E G A L+P++ARLR+LTY++P++ D + R+
Sbjct: 67 QI-DTSIQYVLKFGQLSLSRPSVEEREGVARGLWPSEARLRSLTYASPVFVDAEQKIYRM 125
Query: 367 VDPETGEEEATSEEP-EKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
E G + E ++ + ++P+MLRS +C HN++E EL S GEC DQGGYFIIN
Sbjct: 126 --HEDGTQTLLHETTYSRLPLAKIPIMLRSEYCWTHNISERELQSAGECIYDQGGYFIIN 183
[94][TOP]
>UniRef100_A5DHT2 DNA-directed RNA polymerase II subunit RPB2 n=1 Tax=Pichia
guilliermondii RepID=RPB2_PICGU
Length = 1236
Score = 160 bits (405), Expect = 6e-38
Identities = 85/188 (45%), Positives = 118/188 (62%), Gaps = 8/188 (4%)
Frame = +1
Query: 4 NDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPG 183
+ + I+ ED W VI+++F E GLV QQL S++EF+ T+Q LV E ++L Q+
Sbjct: 14 DSSSITPEDCWTVISSFFQEKGLVSQQLDSFDEFIESTIQELVWEDSRLILDQPAQHTSE 73
Query: 184 RDAPDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVR 363
D EN + I FG++ +SKP TE +G ++P +ARLRNLTYS+PLY D+TK ++
Sbjct: 74 ED--HENRRYEITFGKIYISKPTQTEGDGTTHPMFPQEARLRNLTYSSPLYVDMTKRVLK 131
Query: 364 LVDP-------ETGEEEATSEEPE-KVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVD 519
D E EEE EEP KV++G+VP+MLRS+FC+L +L E E L EC D
Sbjct: 132 SDDNAGNEHELEWIEEEIKDEEPSTKVYLGKVPIMLRSKFCMLRDLGEHEFYELKECPYD 191
Query: 520 QGGYFIIN 543
GGYF+IN
Sbjct: 192 MGGYFVIN 199
[95][TOP]
>UniRef100_UPI0000586387 PREDICTED: similar to RNA polymerase II subunit B, partial n=1
Tax=Strongylocentrotus purpuratus RepID=UPI0000586387
Length = 300
Score = 160 bits (404), Expect = 7e-38
Identities = 81/173 (46%), Positives = 117/173 (67%)
Frame = +1
Query: 25 EDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAPDEN 204
E W VI++YFDE GLVRQQL S++EF+ +++QR+V++SP + L E Q++ +
Sbjct: 24 EACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPAVDLQAEAQHMTTEQ--EVP 81
Query: 205 TKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVDPETG 384
T+ ++KF Q+ +SKP E +G + PN+ARLRNLTYS PLY D+TKT ++ D E
Sbjct: 82 TRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVIK--DGEDP 139
Query: 385 EEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
+E +K FIG++P+MLRS +CLL+ L + +L L EC +D GGYFIIN
Sbjct: 140 QETI----HQKTFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIIN 188
[96][TOP]
>UniRef100_A7SHD8 DNA-directed RNA polymerase n=1 Tax=Nematostella vectensis
RepID=A7SHD8_NEMVE
Length = 1182
Score = 160 bits (404), Expect = 7e-38
Identities = 81/177 (45%), Positives = 116/177 (65%)
Frame = +1
Query: 13 DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDA 192
D+ E W VI++YFDE GLVRQQL S++EF+ +++QR+V++SP+I L E Q++
Sbjct: 24 DLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPEIDLQAESQHM--TSD 81
Query: 193 PDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVD 372
+ + V+KF Q+ +SKP E +G + PN+ARLRNLTYS P Y D+TKT ++
Sbjct: 82 TEIPARFVLKFEQIYLSKPTHWEKDGAPSPMMPNEARLRNLTYSAPFYVDITKTRIK--- 138
Query: 373 PETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
EE K+FIG++P+MLRS +CLL+ L + +L L EC +D GGYFIIN
Sbjct: 139 ---DNEEPQVTTHSKMFIGKIPIMLRSTYCLLNGLLDRDLTELNECPLDPGGYFIIN 192
[97][TOP]
>UniRef100_Q753Q4 DNA-directed RNA polymerase II subunit RPB2 n=1 Tax=Eremothecium
gossypii RepID=RPB2_ASHGO
Length = 1222
Score = 160 bits (404), Expect = 7e-38
Identities = 84/186 (45%), Positives = 124/186 (66%), Gaps = 7/186 (3%)
Frame = +1
Query: 7 DADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGR 186
DA I+AED+W VI+A+F E GLV QQL S+N+F++ T+Q L+ E ++L Q+
Sbjct: 18 DAPITAEDSWTVISAFFREKGLVSQQLDSFNQFINYTIQDLILEDSTLILEQLAQHTT-- 75
Query: 187 DAPDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRL 366
+A + + K I FG++ ++KP+ TE++G + +YP +ARLRNLTY++ L+ ++ K T
Sbjct: 76 EADNISRKYEISFGKIYLAKPSMTESDGVSHAMYPQEARLRNLTYASGLFVEIKKRTYEA 135
Query: 367 VDP-------ETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQG 525
VD E +EE+ E K+FIGRVP+MLRS++CLL +L+E +L L EC D G
Sbjct: 136 VDIPGRDLKYEIIQEESEDTEEGKIFIGRVPIMLRSKYCLLDDLSESDLYRLKECPFDMG 195
Query: 526 GYFIIN 543
GYFIIN
Sbjct: 196 GYFIIN 201
[98][TOP]
>UniRef100_Q4YWL7 Putative uncharacterized protein (Fragment) n=1 Tax=Plasmodium
berghei RepID=Q4YWL7_PLABE
Length = 467
Score = 159 bits (403), Expect = 9e-38
Identities = 78/183 (42%), Positives = 122/183 (66%), Gaps = 3/183 (1%)
Frame = +1
Query: 4 NDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPG 183
+D I+ ED+W VI ++F HGLV QQ++SYN+F+ MQ ++DE P+I + P+ QY P
Sbjct: 29 DDDQITEEDSWIVIGSFFGSHGLVNQQIESYNDFIEYRMQEIIDEHPNIEIKPQPQYRPD 88
Query: 184 RDAPDENTKVV--IKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTT 357
+ DEN ++ +KFGQL + +P F E N L+P +ARLRNLTYS+ +Y D+ ++T
Sbjct: 89 K---DENNNIIYSLKFGQLSLDRPFFDEKNLVNKNLWPQEARLRNLTYSSAIYIDIEQST 145
Query: 358 VRLVDPETGEEEATSE-EPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYF 534
++D T ++ + E++ +GR+P+ML+S FC L E +++ +GEC +DQGGYF
Sbjct: 146 Y-IIDENTKKQILKEKFVYERINLGRIPLMLKSMFCWTKGLAENDISDMGECSLDQGGYF 204
Query: 535 IIN 543
I+N
Sbjct: 205 IVN 207
[99][TOP]
>UniRef100_UPI0001865901 hypothetical protein BRAFLDRAFT_125505 n=1 Tax=Branchiostoma
floridae RepID=UPI0001865901
Length = 1176
Score = 159 bits (402), Expect = 1e-37
Identities = 82/177 (46%), Positives = 117/177 (66%)
Frame = +1
Query: 13 DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDA 192
D+ E W VI++YFDE GLVRQQL S++EF+ +++QR+V++SP I L E Q++
Sbjct: 22 DLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHLTME-- 79
Query: 193 PDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVD 372
+ + ++ F Q+ +SKP E +G + PN+ARLRNLTYS PLY D+TKT V+
Sbjct: 80 AEVPPRYLLNFEQIYLSKPTHWEKDGAPSPMMPNEARLRNLTYSAPLYVDITKTIVK--- 136
Query: 373 PETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
GEE ++ +K FIG++P+MLRS +CLL L + +L L EC +D GGYFIIN
Sbjct: 137 --DGEERIETQH-QKTFIGKIPIMLRSTYCLLSGLTDRDLTELNECPLDPGGYFIIN 190
[100][TOP]
>UniRef100_UPI000151B416 hypothetical protein PGUG_02833 n=1 Tax=Pichia guilliermondii ATCC
6260 RepID=UPI000151B416
Length = 1291
Score = 159 bits (402), Expect = 1e-37
Identities = 85/184 (46%), Positives = 116/184 (63%), Gaps = 8/184 (4%)
Frame = +1
Query: 16 ISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAP 195
I+ ED W VI+++F E GLV QQL S++EF+ T+Q LV E ++L Q+ D
Sbjct: 73 ITPEDCWTVISSFFQEKGLVSQQLDSFDEFIESTIQELVWEDSRLILDQPAQHTSEED-- 130
Query: 196 DENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVDP 375
EN + I FG++ +SKP TE +G ++P +ARLRNLTYS+PLY D+TK ++ D
Sbjct: 131 HENRRYEITFGKIYISKPTQTEGDGTTHPMFPQEARLRNLTYSSPLYVDMTKRVLKSDDN 190
Query: 376 -------ETGEEEATSEEP-EKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGY 531
E EEE EEP KV++G+VP+MLRS+FC+L +L E E L EC D GGY
Sbjct: 191 AGNEHELEWIEEEIKDEEPLTKVYLGKVPIMLRSKFCMLRDLGEHEFYELKECPYDMGGY 250
Query: 532 FIIN 543
F+IN
Sbjct: 251 FVIN 254
[101][TOP]
>UniRef100_C5LHP3 DNA-directed RNA polymerase n=1 Tax=Perkinsus marinus ATCC 50983
RepID=C5LHP3_9ALVE
Length = 993
Score = 159 bits (402), Expect = 1e-37
Identities = 84/184 (45%), Positives = 123/184 (66%), Gaps = 7/184 (3%)
Frame = +1
Query: 13 DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDA 192
+I +D+W V +AYF + GLV QQ+ S+++FV+ MQ +VDE P I +IP++Q G ++
Sbjct: 108 EIVQDDSWAVADAYFKDKGLVSQQVGSFDDFVTYKMQEIVDECPPITIIPQNQV--GWES 165
Query: 193 PDE----NTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTV 360
++ +++FGQL ++KP E +G +L PNQARLRNLTYS+P+Y +VT+TT
Sbjct: 166 EGARVYMDSSFLVEFGQLSLNKPTVEEVDGAMTSLTPNQARLRNLTYSSPVYVNVTQTTY 225
Query: 361 RLVDPE--TGEEEATSEEP-EKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGY 531
L DP+ E++ SE+ K+ IGR+P+ML+S +C L N E L +GEC DQGGY
Sbjct: 226 ALADPDDPNSEKQLISEDSYSKILIGRIPMMLKSEYCWLKNQTERGLVEMGECVFDQGGY 285
Query: 532 FIIN 543
FIIN
Sbjct: 286 FIIN 289
[102][TOP]
>UniRef100_C3Y5U9 DNA-directed RNA polymerase n=1 Tax=Branchiostoma floridae
RepID=C3Y5U9_BRAFL
Length = 1104
Score = 159 bits (402), Expect = 1e-37
Identities = 82/177 (46%), Positives = 117/177 (66%)
Frame = +1
Query: 13 DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDA 192
D+ E W VI++YFDE GLVRQQL S++EF+ +++QR+V++SP I L E Q++
Sbjct: 22 DLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHLTME-- 79
Query: 193 PDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVD 372
+ + ++ F Q+ +SKP E +G + PN+ARLRNLTYS PLY D+TKT V+
Sbjct: 80 AEVPPRYLLNFEQIYLSKPTHWEKDGAPSPMMPNEARLRNLTYSAPLYVDITKTIVK--- 136
Query: 373 PETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
GEE ++ +K FIG++P+MLRS +CLL L + +L L EC +D GGYFIIN
Sbjct: 137 --DGEERIETQH-QKTFIGKIPIMLRSTYCLLSGLTDRDLTELNECPLDPGGYFIIN 190
[103][TOP]
>UniRef100_B3LYR3 DNA-directed RNA polymerase n=1 Tax=Drosophila ananassae
RepID=B3LYR3_DROAN
Length = 1176
Score = 159 bits (402), Expect = 1e-37
Identities = 81/173 (46%), Positives = 111/173 (64%)
Frame = +1
Query: 25 EDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAPDEN 204
E W VINAYFDE GLVRQQL S++EF+ +++QR+V++SP I L E Q+ G +
Sbjct: 25 EACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPAIELQAEAQHTSGE--VETP 82
Query: 205 TKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVDPETG 384
+ +KF Q+ +SKP E +G + PN+ARLRNLTYS PLY D+TKT
Sbjct: 83 PRFSLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKT------KNVE 136
Query: 385 EEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
++ + +K FIG++P+MLRS +CLL L + +L L EC +D GGYFIIN
Sbjct: 137 GQDPIETQHQKTFIGKIPIMLRSTYCLLSQLTDRDLTELNECPLDPGGYFIIN 189
[104][TOP]
>UniRef100_A3GFG5 DNA-directed RNA polymerase n=1 Tax=Pichia stipitis
RepID=A3GFG5_PICST
Length = 1232
Score = 159 bits (402), Expect = 1e-37
Identities = 85/184 (46%), Positives = 116/184 (63%), Gaps = 8/184 (4%)
Frame = +1
Query: 16 ISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAP 195
I+ ED W VI+++F E GLV QQL S++EF+ T+Q LV E ++L Q+ D
Sbjct: 18 ITPEDCWTVISSFFQEKGLVSQQLDSFDEFIETTIQELVWEDSHLILDQPAQHTSEDD-- 75
Query: 196 DENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVDP 375
EN + I FG++ +SKP TE +G ++P +ARLRNLTYS+PLY D+TK + D
Sbjct: 76 HENRRYEITFGKIYISKPMQTEGDGTTHPMFPQEARLRNLTYSSPLYVDMTKKVFKSDDN 135
Query: 376 -------ETGEEEATSEEPE-KVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGY 531
E EE+ EEP+ KVF+G+VP+MLRS+FC+L +L E E L EC D GGY
Sbjct: 136 RRKENELEWVEEKVEDEEPQQKVFLGKVPIMLRSKFCMLRDLGEHEFFELKECPYDMGGY 195
Query: 532 FIIN 543
F+IN
Sbjct: 196 FVIN 199
[105][TOP]
>UniRef100_Q6CAD6 DNA-directed RNA polymerase n=1 Tax=Yarrowia lipolytica
RepID=Q6CAD6_YARLI
Length = 1229
Score = 159 bits (401), Expect = 2e-37
Identities = 83/188 (44%), Positives = 117/188 (62%), Gaps = 9/188 (4%)
Frame = +1
Query: 7 DADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGR 186
D +I+AED W VI+++F+E GLV QQL S++EF+ T+Q LV E ++L Q+
Sbjct: 13 DTEITAEDCWTVISSFFNEKGLVSQQLDSFDEFIETTIQELVWEDRTLILDQPAQHTTPN 72
Query: 187 DAPDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRL 366
D ++N + I FG++ +S+P TE +G +YP +AR RNLTYS+PLY D+ K +
Sbjct: 73 D--NQNKRFEITFGKIYLSRPTMTEADGSTHPMYPQEARARNLTYSSPLYVDMKKRVLFS 130
Query: 367 VDPETGEEE--------ATSEEP-EKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVD 519
+D E EEP KV+IG+VP+MLRS+FC+L L E +L L EC D
Sbjct: 131 IDDPARPEADVVWNPIPGEVEEPVSKVYIGKVPIMLRSKFCILRGLRENDLYELNECPYD 190
Query: 520 QGGYFIIN 543
QGGYF+IN
Sbjct: 191 QGGYFVIN 198
[106][TOP]
>UniRef100_Q4Y5W4 DNA-directed RNA polymerase II second largest subunit, putative
(Fragment) n=1 Tax=Plasmodium chabaudi
RepID=Q4Y5W4_PLACH
Length = 727
Score = 158 bits (399), Expect = 3e-37
Identities = 80/184 (43%), Positives = 123/184 (66%), Gaps = 4/184 (2%)
Frame = +1
Query: 4 NDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPG 183
+D I+ ED+W VI ++F HGLV QQ++SYN+F+ MQ ++DE P I + P+ QY P
Sbjct: 27 DDDQINEEDSWVVIGSFFG-HGLVNQQIESYNDFIEYRMQEIIDEHPHIEIKPQPQYRPD 85
Query: 184 RDAPDENTKVV--IKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTT 357
+D ENT ++ +KFGQL + +P F E N L+P +ARLRNLTYS+ +Y D+ ++T
Sbjct: 86 KD---ENTNIIYSLKFGQLSLDRPFFDEKNLVNKNLWPQEARLRNLTYSSAIYIDIEQST 142
Query: 358 VRLVDPETGEEEATSEE--PEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGY 531
+ ET +++ E+ E++ +GR+P+ML+S FC L E +++ +GEC +DQGGY
Sbjct: 143 YMI--DETTKKQILKEKFVYERINLGRIPLMLKSMFCWTKGLPENDISDMGECSLDQGGY 200
Query: 532 FIIN 543
FI+N
Sbjct: 201 FIVN 204
[107][TOP]
>UniRef100_Q6CWA5 DNA-directed RNA polymerase n=1 Tax=Kluyveromyces lactis
RepID=Q6CWA5_KLULA
Length = 1221
Score = 157 bits (398), Expect = 4e-37
Identities = 83/187 (44%), Positives = 122/187 (65%), Gaps = 8/187 (4%)
Frame = +1
Query: 7 DADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGR 186
+A ISAED+W VI+A+F E GLV QQL S+N+F++ T+Q L+ E ++L Q+
Sbjct: 16 EAAISAEDSWTVISAFFREKGLVSQQLDSFNQFINYTIQDLILEDSTLILEQLAQHTTET 75
Query: 187 DAPDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRL 366
D + + K I FG++ ++KP+ TE++G + +YP +ARLRNLTY++ L+ ++ K T +
Sbjct: 76 D--NISRKYEISFGKIYLAKPSMTESDGVSHAMYPQEARLRNLTYASGLFVEIQKRTYQA 133
Query: 367 VDPE--------TGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQ 522
+D EE +EE K+FIGRVP+MLRS++CLL +L E +L L EC D
Sbjct: 134 IDIPGRDLKYEIITEESEENEENNKIFIGRVPIMLRSKYCLLDDLTESDLYRLKECPFDM 193
Query: 523 GGYFIIN 543
GGYFIIN
Sbjct: 194 GGYFIIN 200
[108][TOP]
>UniRef100_Q5A8Y5 DNA-directed RNA polymerase n=2 Tax=Candida albicans
RepID=Q5A8Y5_CANAL
Length = 1234
Score = 157 bits (398), Expect = 4e-37
Identities = 83/186 (44%), Positives = 116/186 (62%), Gaps = 7/186 (3%)
Frame = +1
Query: 7 DADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGR 186
D I+ ED W VI ++F E GLV QQL S++EFV ++Q LV E ++L Q+ +
Sbjct: 17 DEPITQEDCWTVITSFFQEKGLVSQQLDSFDEFVETSIQELVWEDSHLILDQPAQHTSEK 76
Query: 187 DAPDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRL 366
D EN + I FG++ +SKP+ TE +G ++P +ARLRNLTYS+PLY D+T +
Sbjct: 77 D--HENKRYEITFGKIYISKPSQTEGDGSTHAVFPQEARLRNLTYSSPLYVDMTSKVFKS 134
Query: 367 VDPETGEEEAT--SEEPEK-----VFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQG 525
D + + E EEP+K VF+G+VP+MLRS+FC+L +L E E L EC D G
Sbjct: 135 DDNKRKDNELEWIQEEPDKDTETKVFLGKVPIMLRSKFCMLRDLAEHEFYELKECPYDMG 194
Query: 526 GYFIIN 543
GYF+IN
Sbjct: 195 GYFVIN 200
[109][TOP]
>UniRef100_B9W6V2 DNA-directed RNA polymerase n=1 Tax=Candida dubliniensis CD36
RepID=B9W6V2_CANDC
Length = 1234
Score = 157 bits (398), Expect = 4e-37
Identities = 83/186 (44%), Positives = 116/186 (62%), Gaps = 7/186 (3%)
Frame = +1
Query: 7 DADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGR 186
D I+ ED W VI ++F E GLV QQL S++EFV ++Q LV E ++L Q+ +
Sbjct: 17 DEPITQEDCWTVITSFFQEKGLVSQQLDSFDEFVETSIQELVWEDSHLILDQPAQHTSEK 76
Query: 187 DAPDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRL 366
D EN + I FG++ +SKP+ TE +G ++P +ARLRNLTYS+PLY D+T +
Sbjct: 77 D--HENKRYEITFGKIYISKPSQTEGDGSTHAVFPQEARLRNLTYSSPLYVDMTSKVFKS 134
Query: 367 VDPETGEEEAT--SEEPEK-----VFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQG 525
D + + E EEP+K VF+G+VP+MLRS+FC+L +L E E L EC D G
Sbjct: 135 DDNKRKDNELEWIQEEPDKDTETKVFLGKVPIMLRSKFCMLRDLAEHEFYELKECPYDMG 194
Query: 526 GYFIIN 543
GYF+IN
Sbjct: 195 GYFVIN 200
[110][TOP]
>UniRef100_Q7RQI2 DNA-directed RNA polymerase n=1 Tax=Plasmodium yoelii yoelii
RepID=Q7RQI2_PLAYO
Length = 1312
Score = 157 bits (396), Expect = 6e-37
Identities = 77/183 (42%), Positives = 122/183 (66%), Gaps = 3/183 (1%)
Frame = +1
Query: 4 NDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPG 183
++ I+ ED+W VI ++F HGLV QQ++SYN+F+ MQ ++DE P+I + P+ QY P
Sbjct: 29 DEDQITEEDSWIVIGSFFGSHGLVNQQIESYNDFIEYRMQEIIDEHPNIEIKPQPQYRPD 88
Query: 184 RDAPDENTKVV--IKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTT 357
+ DEN ++ +KFGQL + +P F E N L+P +ARLRNLTYS+ +Y D+ ++T
Sbjct: 89 K---DENNNIIYSLKFGQLSLDRPFFDEKNLINKNLWPQEARLRNLTYSSAIYIDIEQST 145
Query: 358 VRLVDPETGEEEATSE-EPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYF 534
+VD T ++ + E++ +GR+P+ML+S FC L + +++ +GEC +DQGGYF
Sbjct: 146 Y-IVDENTKKQILKEKFVYERINLGRIPLMLKSMFCWTKGLPDNDISDMGECSLDQGGYF 204
Query: 535 IIN 543
I+N
Sbjct: 205 IVN 207
[111][TOP]
>UniRef100_Q27826 DNA-directed RNA polymerase n=1 Tax=Euplotes octocarinatus
RepID=Q27826_EUPOC
Length = 1194
Score = 157 bits (396), Expect = 6e-37
Identities = 88/182 (48%), Positives = 119/182 (65%), Gaps = 3/182 (1%)
Frame = +1
Query: 7 DADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPG- 183
D +I+ EDAW VI AYFD+HGLV QQ+ S++ F+S T+Q +V E+ I + PE Q+ PG
Sbjct: 29 DDEITQEDAWAVIRAYFDQHGLVSQQISSFDRFLSYTVQDIVTENNTISIQPELQFAPGS 88
Query: 184 RDAPDENTKVVIKFGQLRVS-KPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTV 360
+ EN K I GQ+RV+ KP F E + + ++PN+ARLRNLTY T LY +V K
Sbjct: 89 MNESRENIKYDIILGQVRVNEKPRFKEFDDKYNVIFPNEARLRNLTYQTSLYVEVKKQD- 147
Query: 361 RLVDPETGEEEATSEEPEK-VFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFI 537
V + G E E+ EK V++G+VPVM+RS FC L+ ++E E + EC DQGGYFI
Sbjct: 148 -KVVEQDGSEVIIDEQTEKEVYMGKVPVMVRSGFCSLNGIDESERWEMKECFHDQGGYFI 206
Query: 538 IN 543
IN
Sbjct: 207 IN 208
[112][TOP]
>UniRef100_C5DLS0 DNA-directed RNA polymerase n=1 Tax=Lachancea thermotolerans CBS
6340 RepID=C5DLS0_LACTC
Length = 1220
Score = 157 bits (396), Expect = 6e-37
Identities = 81/187 (43%), Positives = 122/187 (65%), Gaps = 7/187 (3%)
Frame = +1
Query: 4 NDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPG 183
++A I+AED+W VI+A+F E GLV QQL S+N+F++ T+Q + E ++L Q+
Sbjct: 17 DEASITAEDSWTVISAFFREKGLVSQQLDSFNQFINYTIQDSIVEDSTLILEQLAQHTT- 75
Query: 184 RDAPDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVR 363
+A + + K I FG++ ++KP+ TE++G + +YP +ARLRNLTY++ L+ ++ K T
Sbjct: 76 -EADNISRKYEISFGKIYLAKPSMTESDGVSHAMYPQEARLRNLTYASGLFVEIRKRTYE 134
Query: 364 LVDP-------ETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQ 522
VD E +EE+ + K+FIGRVP+MLRS++CLL L E +L L EC D
Sbjct: 135 AVDIPGRDLKYEVIDEESEMSDESKIFIGRVPIMLRSKYCLLDELTESDLYKLKECPFDM 194
Query: 523 GGYFIIN 543
GGYFIIN
Sbjct: 195 GGYFIIN 201
[113][TOP]
>UniRef100_UPI000186D6F3 DNA-directed RNA polymerase II 135 kDa polypeptide, putative n=1
Tax=Pediculus humanus corporis RepID=UPI000186D6F3
Length = 1175
Score = 156 bits (394), Expect = 1e-36
Identities = 80/178 (44%), Positives = 117/178 (65%)
Frame = +1
Query: 10 ADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRD 189
+++ E W VIN+YFDE GLVRQQL S++EF+ +++QR+V+++P I L E Q+ G
Sbjct: 19 SELWQEACWIVINSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDTPIIDLQAEAQHASGE- 77
Query: 190 APDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLV 369
+ ++KF Q+ +SKP E +G + PN+ARLRNLTYS PLY D+TK ++
Sbjct: 78 -IENPPHYLLKFEQIYLSKPTHWEKDGAPSPMMPNEARLRNLTYSAPLYVDITKKIIK-- 134
Query: 370 DPETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
GE+ ++ +K FIG++P+MLRS +CLL L + +L L EC +D GGYFIIN
Sbjct: 135 ---EGEDPIETKH-QKSFIGKIPIMLRSTYCLLSGLTDRDLTELNECPLDPGGYFIIN 188
[114][TOP]
>UniRef100_B6KB61 DNA-directed RNA polymerase n=3 Tax=Toxoplasma gondii
RepID=B6KB61_TOXGO
Length = 1259
Score = 155 bits (391), Expect = 2e-36
Identities = 78/177 (44%), Positives = 113/177 (63%), Gaps = 1/177 (0%)
Frame = +1
Query: 16 ISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAP 195
+ + W V++++F HGLV QQL+S+N+FVS +Q ++DE P I + P QY P +
Sbjct: 86 VDQDACWAVVSSFFHSHGLVNQQLESFNDFVSYKIQEIIDEHPPIEIRPTPQYRPEEEV- 144
Query: 196 DENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVDP 375
+ N +K QL +++P+ E G + L+P +AR RNLTYS+PLY DV +TT VDP
Sbjct: 145 ESNVIYRLKMDQLSLNRPSVEEKEGISKHLWPYEARTRNLTYSSPLYVDVEQTTYT-VDP 203
Query: 376 ETGEEEATSEEP-EKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
ETG E + +V +GR+P+ML+S +C +L E +L +GEC DQGGYFIIN
Sbjct: 204 ETGAERLVDQVTYSRVLLGRIPMMLKSAYCWTKDLPEHDLADVGECAYDQGGYFIIN 260
[115][TOP]
>UniRef100_A8XS50 DNA-directed RNA polymerase n=1 Tax=Caenorhabditis briggsae
RepID=A8XS50_CAEBR
Length = 1215
Score = 155 bits (391), Expect = 2e-36
Identities = 84/192 (43%), Positives = 117/192 (60%), Gaps = 15/192 (7%)
Frame = +1
Query: 13 DISAEDAWEVINAYFDE---------------HGLVRQQLQSYNEFVSVTMQRLVDESPD 147
D E W VI+AYFDE GLVRQQL S++EFV + +QR+V++SP
Sbjct: 34 DAWQEACWVVISAYFDEKVNFGFFLIKTICMFQGLVRQQLDSFDEFVQMNVQRIVEDSPP 93
Query: 148 IVLIPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYST 327
+ L E+Q++ G D + K +KF Q+ +SKP E +G + PN+ARLRNLTY++
Sbjct: 94 VELQSENQHL-GNDM-ENPAKFSLKFNQIYLSKPTHWEKDGAPMPMMPNEARLRNLTYAS 151
Query: 328 PLYCDVTKTTVRLVDPETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGE 507
PLY D+TK R +E + EKVF+G+VPVMLRS +C+L N+ + +L L E
Sbjct: 152 PLYVDITKVVTR-------DESVNEKVYEKVFVGKVPVMLRSSYCMLSNMTDRDLTELNE 204
Query: 508 CHVDQGGYFIIN 543
C +D GGYF+IN
Sbjct: 205 CPLDPGGYFVIN 216
[116][TOP]
>UniRef100_A5KBW7 DNA-directed RNA polymerase n=1 Tax=Plasmodium vivax
RepID=A5KBW7_PLAVI
Length = 1339
Score = 154 bits (390), Expect = 3e-36
Identities = 77/177 (43%), Positives = 114/177 (64%), Gaps = 1/177 (0%)
Frame = +1
Query: 16 ISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAP 195
I+ ED+W VI ++F HGLV QQ++SYN+F+ MQ ++DE P I + P+ QY RD
Sbjct: 31 ITEEDSWVVIGSFFGSHGLVNQQIESYNDFIEYRMQEIIDEHPQIEIRPQPQYRSDRD-D 89
Query: 196 DENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVDP 375
++N +KFGQL + +P + E N L+P +ARLRNLTYS+ +Y D+ ++T +VD
Sbjct: 90 NKNVMYALKFGQLSLDRPFYDERNLTNKNLWPQEARLRNLTYSSAIYIDIEQSTY-VVDE 148
Query: 376 ETGEEEATSE-EPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
T + + E++ +GR+P+ML+S FC L E E+ +GEC DQGGYFI+N
Sbjct: 149 STRSQILKEKFIYERINLGRIPLMLKSMFCWTKGLPESEIADMGECAFDQGGYFIVN 205
[117][TOP]
>UniRef100_B5RV50 DNA-directed RNA polymerase n=1 Tax=Debaryomyces hansenii
RepID=B5RV50_DEBHA
Length = 1232
Score = 154 bits (390), Expect = 3e-36
Identities = 82/184 (44%), Positives = 115/184 (62%), Gaps = 8/184 (4%)
Frame = +1
Query: 16 ISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAP 195
I+ E+ W VI+++F E GLV QQL S++EF+ T+Q LV E ++L Q+ D
Sbjct: 20 ITPENCWTVISSFFQEKGLVSQQLDSFDEFIETTIQELVWEDSHLILDQPAQHTSEDD-- 77
Query: 196 DENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVDP 375
EN + I FG++ +SKP TE +G ++P +ARLRNLTYS+PLY D+TK ++ D
Sbjct: 78 HENRRYEITFGKIYISKPTQTEGDGTTHPMFPQEARLRNLTYSSPLYVDMTKKVLKSDDN 137
Query: 376 -------ETGEEEATSEEPE-KVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGY 531
E EE+ E P+ KV++G+VP+MLRS+FC+L L E E L EC D GGY
Sbjct: 138 NRVDNELEWVEEKIEDEGPQTKVYLGKVPIMLRSKFCMLRGLGEHEFYELKECPYDMGGY 197
Query: 532 FIIN 543
F+IN
Sbjct: 198 FVIN 201
[118][TOP]
>UniRef100_UPI00017B4CC9 UPI00017B4CC9 related cluster n=1 Tax=Tetraodon nigroviridis
RepID=UPI00017B4CC9
Length = 1147
Score = 154 bits (389), Expect = 4e-36
Identities = 77/166 (46%), Positives = 114/166 (68%)
Frame = +1
Query: 46 NAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAPDENTKVVIKF 225
++YFDE GLVRQQL S++EF+ +++QR+V+++P I L E Q+ G +E + ++KF
Sbjct: 4 SSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHTSGE--VEEPPRYLLKF 61
Query: 226 GQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVDPETGEEEATSE 405
Q+ +SKP E +G + PN+ARLRNLTYS PLY D+TKT ++ GE++ ++
Sbjct: 62 EQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTIIK-----EGEDQIQTQ 116
Query: 406 EPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
+K FIG++P+MLRS +CLL L + +L L EC +D GGYFIIN
Sbjct: 117 H-QKTFIGKIPIMLRSTYCLLSGLTDRDLCELNECPLDPGGYFIIN 161
[119][TOP]
>UniRef100_Q4T1Y4 DNA-directed RNA polymerase (Fragment) n=1 Tax=Tetraodon
nigroviridis RepID=Q4T1Y4_TETNG
Length = 1217
Score = 154 bits (389), Expect = 4e-36
Identities = 77/166 (46%), Positives = 114/166 (68%)
Frame = +1
Query: 46 NAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAPDENTKVVIKF 225
++YFDE GLVRQQL S++EF+ +++QR+V+++P I L E Q+ G +E + ++KF
Sbjct: 4 SSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHTSGE--VEEPPRYLLKF 61
Query: 226 GQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVDPETGEEEATSE 405
Q+ +SKP E +G + PN+ARLRNLTYS PLY D+TKT ++ GE++ ++
Sbjct: 62 EQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTIIK-----EGEDQIQTQ 116
Query: 406 EPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
+K FIG++P+MLRS +CLL L + +L L EC +D GGYFIIN
Sbjct: 117 H-QKTFIGKIPIMLRSTYCLLSGLTDRDLCELNECPLDPGGYFIIN 161
[120][TOP]
>UniRef100_Q6FLD5 DNA-directed RNA polymerase II subunit RPB2 n=1 Tax=Candida
glabrata RepID=RPB2_CANGA
Length = 1223
Score = 153 bits (387), Expect = 7e-36
Identities = 85/187 (45%), Positives = 113/187 (60%), Gaps = 8/187 (4%)
Frame = +1
Query: 7 DADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGR 186
+A I+AED W VI+A+F E GLV QQL S+N+FV T+Q ++ E ++L Q+ +
Sbjct: 20 NAPITAEDTWAVISAFFREKGLVSQQLDSFNQFVDYTLQDIISEDSTLILEQLAQHTTEQ 79
Query: 187 DAPDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRL 366
D + + K I FG++ V+KP E++G LYP +ARLRNLTYS+ L+ DVTK T
Sbjct: 80 D--NISRKYEISFGKIYVTKPMVNESDGVTHALYPQEARLRNLTYSSGLFVDVTKRTYEA 137
Query: 367 VDPE--------TGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQ 522
VD EE E KVFIGR+P+MLRS+ C L + E +L L EC D
Sbjct: 138 VDVPGRDLNYQLIAEESEEDSESGKVFIGRLPIMLRSKNCYLSDATESDLYKLKECPFDM 197
Query: 523 GGYFIIN 543
GGYFIIN
Sbjct: 198 GGYFIIN 204
[121][TOP]
>UniRef100_P90631 RNA polymerase II second largest subunit (Fragment) n=1
Tax=Moneuplotes crassus RepID=P90631_EUPCR
Length = 205
Score = 153 bits (386), Expect = 9e-36
Identities = 84/191 (43%), Positives = 121/191 (63%), Gaps = 11/191 (5%)
Frame = +1
Query: 4 NDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVP- 180
N +I+ EDAW +I AYF +HGLV QQ+ S++ F+S T+Q +V E+ + ++PE QY P
Sbjct: 5 NSKEITQEDAWALIKAYFQQHGLVSQQISSFDRFLSYTIQDIVAENSIMSIVPEKQYAPG 64
Query: 181 -------GRDAPDENTKVVIKFGQLRVS-KPNFTENNGEAGTLYPNQARLRNLTYSTPLY 336
G + D + + I+ GQ++V+ KP F E + + ++PN+ARLRNLTY T +Y
Sbjct: 65 VRLYLTLGNENQDRDLRYEIELGQVKVNEKPRFKEYDDKYNVIFPNEARLRNLTYQTSVY 124
Query: 337 CDVTKTTVRLVDPETGEEEATSEEPEK-VFIGRVPVMLRSRFCLLHNL-NEFELNSLGEC 510
+VTK V G EE + EK V+IG+VPVM++S FC L+ + NE+E+ EC
Sbjct: 125 VEVTKRD--KVTNSKGVEEVLEKRKEKEVYIGKVPVMIKSAFCSLNRIENEYEMK---EC 179
Query: 511 HVDQGGYFIIN 543
DQGGYFIIN
Sbjct: 180 FFDQGGYFIIN 190
[122][TOP]
>UniRef100_O96236 DNA-directed RNA polymerase n=1 Tax=Plasmodium falciparum 3D7
RepID=O96236_PLAF7
Length = 1340
Score = 153 bits (386), Expect = 9e-36
Identities = 79/183 (43%), Positives = 118/183 (64%), Gaps = 2/183 (1%)
Frame = +1
Query: 1 PNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVP 180
PN+ I+ +D+W VI ++F HGLV QQ++SYN+F+ MQ ++DE P I + P+ QY
Sbjct: 27 PNE-QITEDDSWVVIGSFFGSHGLVNQQIESYNDFIEYRMQEIIDEHPKIEIRPQPQYRT 85
Query: 181 GRDAPDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTV 360
RD D N +KFGQL + +P + E N L+P +ARLRNLTYS+ +Y D+ ++T
Sbjct: 86 DRDEND-NIIYSLKFGQLSLDRPFYDEKNLSNKNLWPQEARLRNLTYSSAIYIDIEQSTY 144
Query: 361 RLVDPETGEEEATSEE--PEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYF 534
++D E ++ E+ E++ +GR+P+ML+S FC L E E+ +GEC DQGGYF
Sbjct: 145 -IID-EVTKKPVLKEKFIYERINLGRIPLMLKSMFCWTKGLPENEIADMGECSYDQGGYF 202
Query: 535 IIN 543
I+N
Sbjct: 203 IVN 205
[123][TOP]
>UniRef100_C4Y646 Putative uncharacterized protein n=1 Tax=Clavispora lusitaniae ATCC
42720 RepID=C4Y646_CLAL4
Length = 369
Score = 153 bits (386), Expect = 9e-36
Identities = 85/190 (44%), Positives = 116/190 (61%), Gaps = 14/190 (7%)
Frame = +1
Query: 16 ISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVL------IPEDQYV 177
I+ ED W VI+++F E GLV QQL S++EF+ T+Q LV E ++L EDQY
Sbjct: 21 ITPEDCWTVISSFFQEKGLVSQQLDSFDEFIESTIQELVWEDSHLILDQPAQHTSEDQY- 79
Query: 178 PGRDAPDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTT 357
EN + I FG++ +SKP TE +G ++P +ARLRNLTYS+PLY D+TK
Sbjct: 80 -------ENKRFEITFGKIYISKPTQTEGDGTTHPMFPQEARLRNLTYSSPLYVDMTKKK 132
Query: 358 VRLVDP-------ETGEEEATSEEPE-KVFIGRVPVMLRSRFCLLHNLNEFELNSLGECH 513
D E EE+ +E+ + KVF+G+VP+MLRS+FC+L +L E E L EC
Sbjct: 133 FTSDDRIRKGNELEWIEEKVDNEDAQSKVFLGKVPIMLRSKFCMLRDLGEHEFYELKECP 192
Query: 514 VDQGGYFIIN 543
D GGYF+IN
Sbjct: 193 YDMGGYFVIN 202
[124][TOP]
>UniRef100_C4QZQ7 DNA-directed RNA polymerase n=1 Tax=Pichia pastoris GS115
RepID=C4QZQ7_PICPG
Length = 1227
Score = 153 bits (386), Expect = 9e-36
Identities = 82/192 (42%), Positives = 118/192 (61%), Gaps = 13/192 (6%)
Frame = +1
Query: 7 DADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGR 186
D I+ ED W VI+A+F+E GLV QQL S++EF+ ++Q LV E P ++L Q+ +
Sbjct: 9 DDTITTEDCWTVISAFFEEKGLVSQQLDSFDEFMETSIQDLVWEEPRLILDQPAQHTNEK 68
Query: 187 DAPDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRL 366
D + N + I+FG++ +S+P TE +G ++P +ARLRNLTYS+P+Y D+ K+
Sbjct: 69 D--NINKRYEIRFGKIYLSRPTMTEADGTTHAMFPQEARLRNLTYSSPVYLDMEKSMFTS 126
Query: 367 VDPETGEEEATS-------------EEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGE 507
+D E G AT EE KV IG+VP+MLRS+FC L L+E +L + E
Sbjct: 127 IDDE-GNPNATLDWQQVHEPIKDGVEEGNKVHIGKVPIMLRSKFCSLRTLDEVDLYKMKE 185
Query: 508 CHVDQGGYFIIN 543
C D GGYF+IN
Sbjct: 186 CPYDMGGYFVIN 197
[125][TOP]
>UniRef100_A5DVP4 DNA-directed RNA polymerase n=1 Tax=Lodderomyces elongisporus
RepID=A5DVP4_LODEL
Length = 1238
Score = 152 bits (385), Expect = 1e-35
Identities = 82/192 (42%), Positives = 117/192 (60%), Gaps = 13/192 (6%)
Frame = +1
Query: 7 DADISA-----EDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQ 171
DAD+ A ED W VI+++F E GLV QQL S++EF+ T+Q LV E ++L Q
Sbjct: 14 DADVEAQNITPEDCWTVISSFFQEKGLVSQQLDSFDEFIESTIQELVWEDSHLILDQPAQ 73
Query: 172 YVPGRDAPDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTK 351
+ +D +N + I FG++ +SKP TE +G ++P +ARLRNLTYS+P+Y D+TK
Sbjct: 74 HTSEKD--HDNKRYEINFGKIYISKPTQTEGDGTTHPMFPQEARLRNLTYSSPIYVDMTK 131
Query: 352 TTV-----RLVDPETGEEEATSE---EPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGE 507
+ +D E E E + KV++G+VP+MLRS+FC+L +L E E L E
Sbjct: 132 RVFTSDDNKRIDNELEWHEIDVEGEKKTSKVYLGKVPIMLRSKFCMLRDLGEHEFYELKE 191
Query: 508 CHVDQGGYFIIN 543
C D GGYF+IN
Sbjct: 192 CPYDMGGYFVIN 203
[126][TOP]
>UniRef100_A8PVJ8 DNA-directed RNA polymerase n=1 Tax=Malassezia globosa CBS 7966
RepID=A8PVJ8_MALGO
Length = 1197
Score = 152 bits (383), Expect = 2e-35
Identities = 86/187 (45%), Positives = 117/187 (62%), Gaps = 10/187 (5%)
Frame = +1
Query: 13 DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDA 192
+IS ED W+VI A+F+E GLVRQQ+ S+NEF+S T+Q LV+ES + L DQ+ A
Sbjct: 9 EISQEDCWDVIKAFFEEKGLVRQQIDSFNEFMSNTVQELVEESKSLTLEQSDQHT--GQA 66
Query: 193 PDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVT-KTTVRLV 369
D+ + I+FGQ+ ++KP TE +G L+P +AR RNLTYS L+ DV+ K V+
Sbjct: 67 EDKTRRYEIEFGQIYMNKPQQTEADGSTAPLFPQEARQRNLTYSAGLHVDVSQKVLVKGE 126
Query: 370 DPETGEE-------EATSEE--PEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQ 522
+ E E + T EE EKV++G+VP+ML S FC L +L + SL EC D
Sbjct: 127 EDELDENGDQLWIPDPTQEEIVDEKVYLGKVPIMLHSHFCWLTDLPDEGKYSLNECPFDS 186
Query: 523 GGYFIIN 543
GGYFIIN
Sbjct: 187 GGYFIIN 193
[127][TOP]
>UniRef100_Q98RY5 DNA-directed RNA polymerase n=1 Tax=Guillardia theta
RepID=Q98RY5_GUITH
Length = 1206
Score = 151 bits (382), Expect = 3e-35
Identities = 72/180 (40%), Positives = 116/180 (64%)
Frame = +1
Query: 4 NDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPG 183
N+++ + W ++ +F + GLV QQ+ S+N F+ TMQ ++D+ P I + ++ PG
Sbjct: 2 NNSNFDIDILWHILKLFFIQKGLVDQQINSFNNFIQNTMQDIIDDMPPITVYIDND--PG 59
Query: 184 RDAPDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVR 363
D ++VI+ GQL +SKP + E++G L PN+ARLRNLTYS+PLYC+++ +
Sbjct: 60 NDDLLSKIRMVIRLGQLHLSKPTYIEDDGLVHNLVPNEARLRNLTYSSPLYCEISTS--- 116
Query: 364 LVDPETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
++ E + + EK+ IGR+P+M++S+FC+L NL+ L +LGEC D GGYFI+N
Sbjct: 117 IIKNEKSIDYILKQFSEKILIGRIPIMIKSKFCILSNLDIKCLKNLGECPDDPGGYFIVN 176
[128][TOP]
>UniRef100_C5MEG3 DNA-directed RNA polymerase n=1 Tax=Candida tropicalis MYA-3404
RepID=C5MEG3_CANTT
Length = 1240
Score = 151 bits (382), Expect = 3e-35
Identities = 81/185 (43%), Positives = 115/185 (62%), Gaps = 9/185 (4%)
Frame = +1
Query: 16 ISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAP 195
I+ ED W VI+++F E GLV QQL S++EFV ++Q LV E ++L Q+ D
Sbjct: 20 ITQEDCWTVISSFFQEKGLVSQQLDSFDEFVETSIQELVWEDSHLILDQPAQHTSVAD-- 77
Query: 196 DENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVDP 375
+N + I+FG++ +SK + TE +G +++P +ARLRNLTYS+PLY D+TK D
Sbjct: 78 HKNKRYEIEFGKIYISKTSQTEGDGTTHSVFPQEARLRNLTYSSPLYVDMTKRKFESDDN 137
Query: 376 ETGEEEATSEEPE---------KVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGG 528
+ + E EE E KVF+G+VP+MLRS+FC+L+ L E E L EC D GG
Sbjct: 138 KRKDNELEWEEIEVDDKEGPQSKVFLGKVPIMLRSKFCMLNGLAEHEFYELKECPYDMGG 197
Query: 529 YFIIN 543
YF+IN
Sbjct: 198 YFVIN 202
[129][TOP]
>UniRef100_B3L0J5 DNA-directed RNA polymerase n=1 Tax=Plasmodium knowlesi strain H
RepID=B3L0J5_PLAKH
Length = 1371
Score = 150 bits (380), Expect = 4e-35
Identities = 75/177 (42%), Positives = 113/177 (63%), Gaps = 1/177 (0%)
Frame = +1
Query: 16 ISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAP 195
I+ ED+W VI ++F HGLV QQ++SYN+F+ MQ ++DE P + + P+ QY D
Sbjct: 72 ITEEDSWVVIGSFFGSHGLVNQQIESYNDFIEYRMQEIIDEHPALEIRPQAQYRSEGD-E 130
Query: 196 DENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVDP 375
+N +KFGQL + +P + E N L+P +ARLRNLTYS+ +Y D+ ++T +VD
Sbjct: 131 QKNVMYALKFGQLSLDRPFYDERNLTNKNLWPQEARLRNLTYSSAIYIDIEQSTY-VVDE 189
Query: 376 ETGEEEATSE-EPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
+G + + E++ +GR+P+ML+S FC L E E+ +GEC DQGGYFI+N
Sbjct: 190 SSGSQILKDKFIYERINLGRIPLMLKSMFCWTKGLPESEIADMGECAFDQGGYFIVN 246
[130][TOP]
>UniRef100_A6S7C1 DNA-directed RNA polymerase n=2 Tax=Botryotinia fuckeliana
RepID=A6S7C1_BOTFB
Length = 1207
Score = 150 bits (380), Expect = 4e-35
Identities = 90/212 (42%), Positives = 122/212 (57%), Gaps = 33/212 (15%)
Frame = +1
Query: 7 DADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVP-- 180
DA I+AED W VI+++F+ GLV QQL S++EFV TMQ LV+E+ + L DQ P
Sbjct: 17 DAGITAEDCWTVISSFFEAKGLVSQQLDSFDEFVQTTMQELVEENSQLTL---DQNNPPS 73
Query: 181 GRDAPDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTT- 357
D P + IKFG + +S+P TE +G + P +ARLRNLTYS+PLY ++TK+T
Sbjct: 74 SHDNPIALRRYEIKFGTIMLSRPAMTEGDGSTQVMLPQEARLRNLTYSSPLYIEMTKSTQ 133
Query: 358 ---------------------------VRLV-DPETGEEEAT--SEEPEKVFIGRVPVML 447
RLV + E G+ E + PE+V+IG++P+ML
Sbjct: 134 VAVERPVPLNELDDEQEAEMVNGGEHPTRLVWEYEDGDPEGPKGAPLPEQVYIGKLPMML 193
Query: 448 RSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
+S FC+L L+E EL EC DQGGYFIIN
Sbjct: 194 KSEFCILKGLDEDELYGWNECPYDQGGYFIIN 225
[131][TOP]
>UniRef100_C5JQR0 DNA-directed RNA polymerase n=1 Tax=Ajellomyces dermatitidis
SLH14081 RepID=C5JQR0_AJEDS
Length = 1258
Score = 149 bits (377), Expect = 1e-34
Identities = 84/209 (40%), Positives = 119/209 (56%), Gaps = 30/209 (14%)
Frame = +1
Query: 7 DADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGR 186
D I++ED W VI+++F+ GLV QQL S++EF+S TMQ LV+E + L + P
Sbjct: 17 DEGITSEDCWTVISSFFESKGLVSQQLDSFDEFISTTMQELVEEQGQVTL--DQTLAPSE 74
Query: 187 DAPDENT--KVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTV 360
D D + +KFG + +++P+ TE +G + P +ARLRNLTY++PLY +TK
Sbjct: 75 DEIDPVVLRRYELKFGTVMLARPSMTEGDGATSIMLPQEARLRNLTYASPLYLGITKRVT 134
Query: 361 ----RLV----DPETGEEEATSE--------------------EPEKVFIGRVPVMLRSR 456
RL+ D E GEE+ E E E VFIGR+P+ML+S+
Sbjct: 135 EGRERLIAERDDAEQGEEDHDEERRSRGTYLHWEPKPLNEDEPEEENVFIGRMPIMLKSK 194
Query: 457 FCLLHNLNEFELNSLGECHVDQGGYFIIN 543
+C+L +LNE L + EC D GGYFIIN
Sbjct: 195 YCILKDLNEQSLYNWNECPYDSGGYFIIN 223
[132][TOP]
>UniRef100_C5GBN2 DNA-directed RNA polymerase n=1 Tax=Ajellomyces dermatitidis ER-3
RepID=C5GBN2_AJEDR
Length = 1258
Score = 149 bits (377), Expect = 1e-34
Identities = 84/209 (40%), Positives = 119/209 (56%), Gaps = 30/209 (14%)
Frame = +1
Query: 7 DADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGR 186
D I++ED W VI+++F+ GLV QQL S++EF+S TMQ LV+E + L + P
Sbjct: 17 DEGITSEDCWTVISSFFESKGLVSQQLDSFDEFISTTMQELVEEQGQVTL--DQTLAPSE 74
Query: 187 DAPDENT--KVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTV 360
D D + +KFG + +++P+ TE +G + P +ARLRNLTY++PLY +TK
Sbjct: 75 DEIDPVVLRRYELKFGTVMLARPSMTEGDGATSIMLPQEARLRNLTYASPLYLGITKRVT 134
Query: 361 ----RLV----DPETGEEEATSE--------------------EPEKVFIGRVPVMLRSR 456
RL+ D E GEE+ E E E VFIGR+P+ML+S+
Sbjct: 135 EGRERLIAERDDAEQGEEDHDEERRSRGTYLHWEPKPLNEDEPEEENVFIGRMPIMLKSK 194
Query: 457 FCLLHNLNEFELNSLGECHVDQGGYFIIN 543
+C+L +LNE L + EC D GGYFIIN
Sbjct: 195 YCILKDLNEQSLYNWNECPYDSGGYFIIN 223
[133][TOP]
>UniRef100_A7TTM7 DNA-directed RNA polymerase n=1 Tax=Vanderwaltozyma polyspora DSM
70294 RepID=A7TTM7_VANPO
Length = 1223
Score = 149 bits (377), Expect = 1e-34
Identities = 82/186 (44%), Positives = 112/186 (60%), Gaps = 8/186 (4%)
Frame = +1
Query: 10 ADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRD 189
A I+AED+W VI+++F E GLV QQL S+N+FV T+Q ++ E ++L Q+ D
Sbjct: 20 APITAEDSWAVISSFFREKGLVSQQLDSFNQFVDYTLQDIISEDSTLILEQLAQHTTESD 79
Query: 190 APDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLV 369
+ + K I FG++ V+KP E++G LYP ++RLRNLTYS+ L+ DV K T V
Sbjct: 80 --NISRKYEISFGKIYVTKPMVNESDGVTHALYPQESRLRNLTYSSGLFVDVNKRTYEAV 137
Query: 370 DPE--------TGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQG 525
D EE E +KVFIGR+P+MLRS+ C L + E +L L EC D G
Sbjct: 138 DVPGRDLNYQLIAEESEEDNENDKVFIGRLPIMLRSKNCYLSDATESDLYKLKECPFDMG 197
Query: 526 GYFIIN 543
GYFIIN
Sbjct: 198 GYFIIN 203
[134][TOP]
>UniRef100_A6R483 DNA-directed RNA polymerase n=1 Tax=Ajellomyces capsulatus NAm1
RepID=A6R483_AJECN
Length = 1743
Score = 149 bits (377), Expect = 1e-34
Identities = 84/209 (40%), Positives = 119/209 (56%), Gaps = 30/209 (14%)
Frame = +1
Query: 7 DADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGR 186
D I++ED W VI+++F+ GLV QQL S++EF+S TMQ LV+E + L + P
Sbjct: 502 DEGITSEDCWTVISSFFESKGLVSQQLDSFDEFISTTMQELVEEQGQVTL--DQTLAPAE 559
Query: 187 DAPDENT--KVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTV 360
D D + +KFG + +++P+ TE +G + P +ARLRNLTY++PLY +TK
Sbjct: 560 DKIDPVVLRRYELKFGTVMLARPSMTEGDGATSIMLPQEARLRNLTYASPLYLGITKRVT 619
Query: 361 ----RLV----DPETGEEEATSE--------------------EPEKVFIGRVPVMLRSR 456
RL+ D E GEE+ E E E VFIGR+P+ML+S+
Sbjct: 620 EGRERLIAERDDAEQGEEDNDEERRSRGTYLHWEPKALNEDEPEEENVFIGRMPIMLKSK 679
Query: 457 FCLLHNLNEFELNSLGECHVDQGGYFIIN 543
+C+L +LNE L + EC D GGYFIIN
Sbjct: 680 YCILKDLNEQSLYNWNECPYDSGGYFIIN 708
[135][TOP]
>UniRef100_C0NB61 DNA-directed RNA polymerase n=1 Tax=Ajellomyces capsulatus G186AR
RepID=C0NB61_AJECG
Length = 1307
Score = 149 bits (376), Expect = 1e-34
Identities = 84/209 (40%), Positives = 119/209 (56%), Gaps = 30/209 (14%)
Frame = +1
Query: 7 DADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGR 186
D I++ED W VI+++F+ GLV QQL S++EF+S TMQ LV+E + L + P
Sbjct: 119 DEGITSEDCWTVISSFFESKGLVSQQLDSFDEFISTTMQELVEEQGQVTL--DQTLAPAE 176
Query: 187 DAPDENT--KVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTV 360
D D + +KFG + +++P+ TE +G + P +ARLRNLTY++PLY +TK
Sbjct: 177 DEIDPVVLRRYELKFGTVMLARPSVTEGDGATSIMLPQEARLRNLTYASPLYLGITKRVT 236
Query: 361 ----RLV----DPETGEEEATSE--------------------EPEKVFIGRVPVMLRSR 456
RL+ D E GEE+ E E E VFIGR+P+ML+S+
Sbjct: 237 EGRERLIAERDDAEQGEEDNDEERRSRGTYLHWEPKALNEDEPEEENVFIGRMPIMLKSK 296
Query: 457 FCLLHNLNEFELNSLGECHVDQGGYFIIN 543
+C+L +LNE L + EC D GGYFIIN
Sbjct: 297 YCILKDLNEQSLYNWNECPYDSGGYFIIN 325
[136][TOP]
>UniRef100_A7E6G0 DNA-directed RNA polymerase n=1 Tax=Sclerotinia sclerotiorum 1980
UF-70 RepID=A7E6G0_SCLS1
Length = 1267
Score = 149 bits (375), Expect = 2e-34
Identities = 84/212 (39%), Positives = 117/212 (55%), Gaps = 33/212 (15%)
Frame = +1
Query: 7 DADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVP-- 180
DA I+AED W VI+++FD GLV QQ+ S++EFV TMQ LV+E+ + L DQ P
Sbjct: 17 DAGITAEDCWTVISSFFDAKGLVSQQIDSFDEFVQTTMQELVEENSQLTL---DQNNPPS 73
Query: 181 GRDAPDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTV 360
D P + IKFG + +S+P TE +G + P +ARLRNLTYS+PLY ++TK+T
Sbjct: 74 SNDNPIALRRYEIKFGTIMLSRPAMTEGDGSTQVMLPQEARLRNLTYSSPLYIEMTKSTQ 133
Query: 361 RLVDPETGEEEATSEE-------------------------------PEKVFIGRVPVML 447
V+ E E+ PE+V++G++P+ML
Sbjct: 134 VAVERPVPLNELDDEQEADLANGGEHPTRLVWEYEDGDPDGAKGGPAPERVYVGKLPMML 193
Query: 448 RSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
+S +C L N +E +L EC DQGGYFIIN
Sbjct: 194 KSEYCFLKNCDEDDLYGWNECPYDQGGYFIIN 225
[137][TOP]
>UniRef100_P08518 DNA-directed RNA polymerase II subunit RPB2 n=4 Tax=Saccharomyces
cerevisiae RepID=RPB2_YEAST
Length = 1224
Score = 148 bits (374), Expect = 2e-34
Identities = 83/186 (44%), Positives = 110/186 (59%), Gaps = 8/186 (4%)
Frame = +1
Query: 10 ADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRD 189
A I+AED+W VI+A+F E GLV QQL S+N+FV T+Q ++ E ++L Q+ D
Sbjct: 23 APITAEDSWAVISAFFREKGLVSQQLDSFNQFVDYTLQDIICEDSTLILEQLAQHTTESD 82
Query: 190 APDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLV 369
+ + K I FG++ V+KP E++G LYP +ARLRNLTYS+ L+ DV K T +
Sbjct: 83 --NISRKYEISFGKIYVTKPMVNESDGVTHALYPQEARLRNLTYSSGLFVDVKKRTYEAI 140
Query: 370 DPE--------TGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQG 525
D EE E KVFIGR+P+MLRS+ C L E +L L EC D G
Sbjct: 141 DVPGRELKYELIAEESEDDSESGKVFIGRLPIMLRSKNCYLSEATESDLYKLKECPFDMG 200
Query: 526 GYFIIN 543
GYFIIN
Sbjct: 201 GYFIIN 206
[138][TOP]
>UniRef100_C5DW43 DNA-directed RNA polymerase n=1 Tax=Zygosaccharomyces rouxii CBS
732 RepID=C5DW43_ZYGRC
Length = 1224
Score = 147 bits (372), Expect = 4e-34
Identities = 82/184 (44%), Positives = 110/184 (59%), Gaps = 8/184 (4%)
Frame = +1
Query: 16 ISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAP 195
I+AED+W VI+A+F E GLV QQL S+N+FV T+Q ++ E ++L Q+ D
Sbjct: 25 ITAEDSWAVISAFFREKGLVSQQLDSFNQFVDYTLQDIISEDSTLILEQLAQHTTESD-- 82
Query: 196 DENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVD- 372
+ + K I FG++ V+KP E++G LYP +ARLRNLTYS+ L+ DV K T VD
Sbjct: 83 NISRKYEISFGKIYVTKPMVNESDGVTHALYPQEARLRNLTYSSGLFVDVKKRTHEAVDI 142
Query: 373 -------PETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGY 531
EE + KVFIGR+P+MLRS+ C L + E +L L EC D GGY
Sbjct: 143 PGRELKYEMIAEESENDSDSGKVFIGRLPIMLRSKNCYLSDATESDLYKLKECPFDMGGY 202
Query: 532 FIIN 543
FIIN
Sbjct: 203 FIIN 206
[139][TOP]
>UniRef100_C4Q1D7 DNA-directed RNA polymerase n=1 Tax=Schistosoma mansoni
RepID=C4Q1D7_SCHMA
Length = 1304
Score = 147 bits (370), Expect = 6e-34
Identities = 80/178 (44%), Positives = 114/178 (64%), Gaps = 1/178 (0%)
Frame = +1
Query: 13 DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDA 192
D+ E W VI++YFDE GLVRQQL S++EF+ ++Q++V++SP I L E Q+ G
Sbjct: 146 DMWQEACWIVISSYFDEKGLVRQQLDSFDEFIQTSIQKIVEDSPIIELQAEAQHSGG--I 203
Query: 193 PDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVD 372
+ + +KF Q+ +SK E +G + + PN ARLRNLTY+ PLY DV K +R
Sbjct: 204 LETPVQYRLKFEQIYLSKATHWEKDGSSVPMTPNDARLRNLTYAAPLYVDVMKKIIR--- 260
Query: 373 PETGEEEATSEEP-EKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
+E E+P EK FIG++P+MLRS +CLL +++ +L L EC +D GGYFIIN
Sbjct: 261 -----DEIEEEKPLEKKFIGKIPIMLRSTYCLLSVMSDRDLAELNECPLDPGGYFIIN 313
[140][TOP]
>UniRef100_A7ATA0 DNA-directed RNA polymerase n=1 Tax=Babesia bovis
RepID=A7ATA0_BABBO
Length = 1207
Score = 146 bits (369), Expect = 8e-34
Identities = 73/174 (41%), Positives = 114/174 (65%), Gaps = 1/174 (0%)
Frame = +1
Query: 25 EDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAPDEN 204
ED+W+VI ++F+ HGLV QQ++S+N+FV+ MQ +D+ P I + P+ QY P D + N
Sbjct: 59 EDSWKVIGSFFNTHGLVHQQIESFNDFVTYRMQETIDQHPPIEITPQPQYHP-EDERENN 117
Query: 205 TKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDV-TKTTVRLVDPET 381
+KFGQL ++KP E G ++P +ARLRNLTYS+ +Y D+ KT +R + T
Sbjct: 118 IVYKLKFGQLSLNKPCVEEMAGVLKHIWPQEARLRNLTYSSQIYVDIEQKTYLRDENTNT 177
Query: 382 GEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
+ T P ++ +GR+P+ML+S +C +++E +L +GEC D+GGYFI+N
Sbjct: 178 ETLQETITYP-RIELGRIPMMLKSAYCWTKDISEDDLADVGECPFDEGGYFIVN 230
[141][TOP]
>UniRef100_Q4U9X1 DNA-directed RNA polymerase n=1 Tax=Theileria annulata
RepID=Q4U9X1_THEAN
Length = 1223
Score = 145 bits (367), Expect = 1e-33
Identities = 71/181 (39%), Positives = 118/181 (65%), Gaps = 1/181 (0%)
Frame = +1
Query: 4 NDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPG 183
+D + + ED W+VI ++F+EHGLV QQ++S+N+F++ MQ ++D P I + P+ Y P
Sbjct: 52 DDENFTEEDTWKVIGSFFNEHGLVHQQIESFNDFITYRMQEIIDSHPPIEITPQPNYRPE 111
Query: 184 RDAPDENTKVV-IKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTV 360
+ EN+ V +KFGQL +SKP+ E +G ++P +ARLRNLTY++ +Y D+ + T
Sbjct: 112 EEV--ENSVVYKLKFGQLSLSKPSVEEKDGVFKHIWPQEARLRNLTYASQVYIDIEQETY 169
Query: 361 RLVDPETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFII 540
D + + ++T +V + R+P+M +S +C LN+ +L+ +GEC DQGGYF++
Sbjct: 170 INEDGKLTQTDSTVY--PRVPLCRMPMMHKSSYCWTRGLNDQDLSDIGECVFDQGGYFVV 227
Query: 541 N 543
N
Sbjct: 228 N 228
[142][TOP]
>UniRef100_C5FJF0 DNA-directed RNA polymerase n=1 Tax=Microsporum canis CBS 113480
RepID=C5FJF0_NANOT
Length = 1258
Score = 145 bits (367), Expect = 1e-33
Identities = 83/210 (39%), Positives = 119/210 (56%), Gaps = 34/210 (16%)
Frame = +1
Query: 16 ISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAP 195
I++ED W VI+A+F+ GLV QQL S++EF+S TMQ LV+E + L DQ VP D
Sbjct: 19 ITSEDCWTVISAFFESKGLVSQQLDSFDEFISTTMQELVEEQGQVTL---DQTVPPGD-- 73
Query: 196 DENTKVV-----IKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTV 360
DE VV +KFG + +++P+ TE +G + P +ARLRNLTY++PLY ++K +
Sbjct: 74 DEQDPVVLRRYELKFGTVMLARPSMTEGDGATSIMLPQEARLRNLTYASPLYLGISKKIM 133
Query: 361 ----RLVDPETGEEEATSE-------------------------EPEKVFIGRVPVMLRS 453
RL+ EEE E E E +FIG++P+ML+S
Sbjct: 134 EGRERLLSERDDEEEEVEEKGDEERRSRGTYLHWERKPTLEDEAEEENIFIGKMPIMLKS 193
Query: 454 RFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
++C+L +L E L + EC D GGYF+IN
Sbjct: 194 KYCILKDLGEQALYNWNECPYDSGGYFVIN 223
[143][TOP]
>UniRef100_B6HM08 DNA-directed RNA polymerase n=1 Tax=Penicillium chrysogenum
Wisconsin 54-1255 RepID=B6HM08_PENCW
Length = 1255
Score = 145 bits (366), Expect = 2e-33
Identities = 85/209 (40%), Positives = 123/209 (58%), Gaps = 30/209 (14%)
Frame = +1
Query: 7 DADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGR 186
D I++ED W VI+++FD GLV QQL S++EF+S TMQ LV+E +VL DQ +P
Sbjct: 17 DEGITSEDCWTVISSFFDSKGLVSQQLDSFDEFISSTMQELVEEQGQVVL---DQTLPPS 73
Query: 187 DAPDENTKVVI-----KFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTK 351
+ DE +V+ KFG + +S+P+ TE +G + P +ARLRNLTY++PLY VTK
Sbjct: 74 E--DEIEPIVVRRYELKFGTVMLSRPSVTEGDGATTIMLPQEARLRNLTYASPLYLGVTK 131
Query: 352 TTV-------RLVDPETGEEEA------------TSEEP------EKVFIGRVPVMLRSR 456
+ + D + E E+ T + P E VFIG++P+ML+S+
Sbjct: 132 KIMEGREKIGKPTDDDDNEGESDPKTQGTYLEWETKQLPQEQMKEETVFIGKMPIMLKSK 191
Query: 457 FCLLHNLNEFELNSLGECHVDQGGYFIIN 543
+C+L +LNE L + EC D GGYF+IN
Sbjct: 192 YCILKDLNESSLYAWNECPYDSGGYFVIN 220
[144][TOP]
>UniRef100_A2QYC2 DNA-directed RNA polymerase n=1 Tax=Aspergillus niger CBS 513.88
RepID=A2QYC2_ASPNC
Length = 1256
Score = 144 bits (363), Expect = 4e-33
Identities = 86/210 (40%), Positives = 122/210 (58%), Gaps = 31/210 (14%)
Frame = +1
Query: 7 DADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGR 186
D I++ED W VI+++FD GLV QQL S++EF+S TMQ LV+E + L DQ +P
Sbjct: 17 DEGITSEDCWTVISSFFDTKGLVSQQLDSFDEFISSTMQELVEEQGQVTL---DQTLP-- 71
Query: 187 DAPDENTKVVI-----KFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTK 351
+ DE VV+ KFG + +S+P+ TE +G + P +ARLRNLTY++PLY VTK
Sbjct: 72 PSEDEVDPVVVRRYELKFGTVMLSRPSVTEGDGATTIMLPQEARLRNLTYASPLYLGVTK 131
Query: 352 TTV----RLVDPETGEEEATSEEPEK----------------------VFIGRVPVMLRS 453
+ RLV ++ A S E +K VFIG++P+ML+S
Sbjct: 132 KIMEGRERLVADRDDDDMAESTEDKKAHGTYLQWEQKELPADQAKEETVFIGKMPIMLKS 191
Query: 454 RFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
++C+L +L+E L + EC D GGYFIIN
Sbjct: 192 KYCILKDLSEQALYNWNECPYDSGGYFIIN 221
[145][TOP]
>UniRef100_A1D971 DNA-directed RNA polymerase n=1 Tax=Neosartorya fischeri NRRL 181
RepID=A1D971_NEOFI
Length = 1255
Score = 142 bits (359), Expect = 1e-32
Identities = 85/208 (40%), Positives = 122/208 (58%), Gaps = 32/208 (15%)
Frame = +1
Query: 16 ISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAP 195
I++ED W VI+++FD GLV QQL S++EF+S TMQ LV+E + L DQ +P D
Sbjct: 20 ITSEDCWTVISSFFDTKGLVSQQLDSFDEFISSTMQELVEEQGQVTL---DQTLPPSD-- 74
Query: 196 DENTKVVI-----KFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTV 360
DE+ VV+ KFG + +S+P+ TE +G + P +ARLRNLTY++PLY +TK +
Sbjct: 75 DEDDPVVLRRYELKFGTVMLSRPSVTEGDGATTIMLPQEARLRNLTYASPLYLGITKRIM 134
Query: 361 ----RL--------VDPETGEEE---------------ATSEEPEKVFIGRVPVMLRSRF 459
RL V P+ E+ A + E VFIG++P+ML+S++
Sbjct: 135 EGRERLIADRDEDDVAPDADEDRKARGTYLQWEQKELPADQAKEETVFIGKMPIMLKSKY 194
Query: 460 CLLHNLNEFELNSLGECHVDQGGYFIIN 543
C+L +L+E L + EC D GGYFIIN
Sbjct: 195 CILKDLSEQALYNWNECPYDSGGYFIIN 222
[146][TOP]
>UniRef100_Q8SR75 DNA-directed RNA polymerase II subunit RPB2 n=1 Tax=Encephalitozoon
cuniculi RepID=RPB2_ENCCU
Length = 1141
Score = 142 bits (359), Expect = 1e-32
Identities = 74/180 (41%), Positives = 120/180 (66%), Gaps = 1/180 (0%)
Frame = +1
Query: 7 DADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGR 186
++ + E +W +I+++F++ GLVRQQL S+++FV MQ +++ESP I++ Q P
Sbjct: 2 ESAFTKEHSWSIISSFFEQKGLVRQQLDSFDQFVKTKMQEVINESPVIIV----QSAPTA 57
Query: 187 DAPDENTKVVIKFGQLRVSKPN-FTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVR 363
+ ++ ++FGQ+ VSKP +TE++G T++PN+AR+R+LTY++PL+ DVTK T+
Sbjct: 58 GIETQK-RIAVRFGQIYVSKPPVYTESDGRTITVFPNEARIRDLTYASPLFIDVTKETLS 116
Query: 364 LVDPETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
E G + + +V G +PVMLRS +C+L+ L + +L LGEC DQGGYFI+N
Sbjct: 117 ----ELGVVD--KHKYSRVPFGSLPVMLRSSYCVLYGLGDKDLIDLGECPYDQGGYFIVN 170
[147][TOP]
>UniRef100_C1H7W3 DNA-directed RNA polymerase n=1 Tax=Paracoccidioides brasiliensis
Pb01 RepID=C1H7W3_PARBA
Length = 1258
Score = 142 bits (358), Expect = 2e-32
Identities = 79/206 (38%), Positives = 117/206 (56%), Gaps = 30/206 (14%)
Frame = +1
Query: 16 ISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAP 195
I++ED W VI+++F+ GLV QQL S++EF+S TMQ LV+E + L + P D
Sbjct: 20 ITSEDCWTVISSFFESKGLVSQQLDSFDEFISTTMQELVEEQGQVTL--DQTLAPSEDEV 77
Query: 196 DENT--KVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTV--- 360
D + +KFG + +++P+ TE +G + P +ARLRNLTY++PLY +TK
Sbjct: 78 DPVVLRRYELKFGTVMLARPSMTEGDGATSIMLPQEARLRNLTYASPLYLGITKRVTEGR 137
Query: 361 -RLV--------DPETGEEEATSE----------------EPEKVFIGRVPVMLRSRFCL 465
RL+ D + +E+ + E E VFIGR+P+ML+S++C+
Sbjct: 138 ERLISERDDADQDEQDNDEDRRNRGTYLHWEPKALNEDEPEEENVFIGRMPIMLKSKYCI 197
Query: 466 LHNLNEFELNSLGECHVDQGGYFIIN 543
L +LNE L + EC D GGYFIIN
Sbjct: 198 LKDLNEQALYNWNECPYDSGGYFIIN 223
[148][TOP]
>UniRef100_C0S0L5 DNA-directed RNA polymerase n=2 Tax=Paracoccidioides brasiliensis
RepID=C0S0L5_PARBP
Length = 1258
Score = 142 bits (358), Expect = 2e-32
Identities = 79/206 (38%), Positives = 117/206 (56%), Gaps = 30/206 (14%)
Frame = +1
Query: 16 ISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAP 195
I++ED W VI+++F+ GLV QQL S++EF+S TMQ LV+E + L + P D
Sbjct: 20 ITSEDCWTVISSFFESKGLVSQQLDSFDEFISTTMQELVEEQGQVTL--DQTLAPSEDEV 77
Query: 196 DENT--KVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTV--- 360
D + +KFG + +++P+ TE +G + P +ARLRNLTY++PLY +TK
Sbjct: 78 DPVVLRRYELKFGTVMLARPSMTEGDGATSIMLPQEARLRNLTYASPLYLGITKRVTEGR 137
Query: 361 -RLV--------DPETGEEEATSE----------------EPEKVFIGRVPVMLRSRFCL 465
RL+ D + +E+ + E E VFIGR+P+ML+S++C+
Sbjct: 138 ERLISERDDADQDEQDNDEDRRNRGTYLHWEPKALNEDEPEEENVFIGRMPIMLKSKYCI 197
Query: 466 LHNLNEFELNSLGECHVDQGGYFIIN 543
L +LNE L + EC D GGYFIIN
Sbjct: 198 LKDLNEQALYNWNECPYDSGGYFIIN 223
[149][TOP]
>UniRef100_Q0CWW4 DNA-directed RNA polymerase n=1 Tax=Aspergillus terreus NIH2624
RepID=Q0CWW4_ASPTN
Length = 1256
Score = 142 bits (357), Expect = 2e-32
Identities = 86/210 (40%), Positives = 125/210 (59%), Gaps = 31/210 (14%)
Frame = +1
Query: 7 DADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGR 186
D I++ED W VI+++FD GLV QQL S++EF+S TMQ LV+E + L DQ +P
Sbjct: 17 DEGITSEDCWTVISSFFDTKGLVSQQLDSFDEFISSTMQELVEEQGQVTL---DQTLPPN 73
Query: 187 DAPDENTKVV-----IKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTK 351
+ DE +V +KFG + +S+P+ TE +G + P +ARLRNLTY++PLY +TK
Sbjct: 74 E--DEVDPIVLRRYELKFGTVMLSRPSVTEGDGATTIMLPQEARLRNLTYASPLYLGITK 131
Query: 352 TTV----RLV----DPETGE--EEATSE----------------EPEKVFIGRVPVMLRS 453
+ RLV + E GE E+ S+ + E VFIG++P+ML+S
Sbjct: 132 RIMEGRERLVADRNEEEMGEPVEDRKSQGTYLQWEQKELPPDQAKEETVFIGKMPIMLKS 191
Query: 454 RFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
++C+L +L+E L + EC D GGYFIIN
Sbjct: 192 KYCILKDLSEQALYNWNECPYDSGGYFIIN 221
[150][TOP]
>UniRef100_C5PAW2 DNA-directed RNA polymerase n=1 Tax=Coccidioides posadasii C735
delta SOWgp RepID=C5PAW2_COCP7
Length = 1258
Score = 142 bits (357), Expect = 2e-32
Identities = 75/207 (36%), Positives = 113/207 (54%), Gaps = 31/207 (14%)
Frame = +1
Query: 16 ISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAP 195
I++ED W VI+++F+ GLV QQL S++EF+S TMQ LV+E + L + P D P
Sbjct: 20 ITSEDCWTVISSFFESKGLVSQQLDSFDEFISTTMQELVEEQGQVTL--DQTIAPDEDDP 77
Query: 196 DENT--KVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLV 369
D + +KFG + +++P+ TE +G + P +ARLRNLTY++PLY +TK
Sbjct: 78 DPVMVRRYELKFGTVMLARPSMTEGDGATSIMLPQEARLRNLTYASPLYLGITKKIAEGR 137
Query: 370 DPETGEEEATSEEP-----------------------------EKVFIGRVPVMLRSRFC 462
+ E + +EP E +FIG++P+ML+S++C
Sbjct: 138 ERSLAERDEDDDEPDAKGDEERRARGTYLQWEPKALPEDEADEENIFIGKMPIMLKSKYC 197
Query: 463 LLHNLNEFELNSLGECHVDQGGYFIIN 543
+L +L E L + EC D GGYFIIN
Sbjct: 198 ILKDLGEHALYNWNECPYDSGGYFIIN 224
[151][TOP]
>UniRef100_Q4N2K9 DNA-directed RNA polymerase n=1 Tax=Theileria parva
RepID=Q4N2K9_THEPA
Length = 1190
Score = 141 bits (356), Expect = 3e-32
Identities = 69/180 (38%), Positives = 116/180 (64%), Gaps = 1/180 (0%)
Frame = +1
Query: 7 DADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGR 186
D + + ED W+VI ++F+EHGLV QQ++S+N+F++ MQ ++D P I + P+ Y P
Sbjct: 53 DENFTEEDTWKVIGSFFNEHGLVHQQIESFNDFITYRMQEIIDAHPPIEITPQPNYRP-- 110
Query: 187 DAPDENTKVV-IKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVR 363
+ +EN+ + +KFGQL ++KP+ E +G ++P +ARLRNLTY++ +Y D+ + T
Sbjct: 111 EEEEENSILYRLKFGQLSLNKPSVEEKDGVFKHIWPQEARLRNLTYASQVYIDIEQET-- 168
Query: 364 LVDPETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
V+ + S +V + R+P+M +S +C LN+ +L+ +GEC DQGGYF++N
Sbjct: 169 FVNENGKLVQTDSTVYPRVPLCRMPMMHKSSYCWTRGLNDRDLSDIGECVFDQGGYFVVN 228
[152][TOP]
>UniRef100_B8NK59 DNA-directed RNA polymerase n=2 Tax=Aspergillus RepID=B8NK59_ASPFN
Length = 1254
Score = 141 bits (356), Expect = 3e-32
Identities = 86/206 (41%), Positives = 121/206 (58%), Gaps = 30/206 (14%)
Frame = +1
Query: 16 ISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAP 195
I++ED W VI+++FD GLV QQL S++EF+S TMQ LV+E + L DQ +P +
Sbjct: 20 ITSEDCWTVISSFFDTKGLVSQQLDSFDEFISSTMQELVEEQGQVTL---DQTLPPDE-- 74
Query: 196 DENTKVVI-----KFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTV 360
DE VV+ KFG + +S+P+ TE +G + P +ARLRNLTY++PLY +TK +
Sbjct: 75 DEVDPVVVRRYELKFGTVMLSRPSVTEGDGATTIMLPQEARLRNLTYASPLYLGITKRIM 134
Query: 361 ----RLV----DPETGEEE-----------------ATSEEPEKVFIGRVPVMLRSRFCL 465
R V D E E+E A + E VFIG+VP+ML+S++C+
Sbjct: 135 EGRERSVADRDDEEIEEDEDRKARGTYLQWEQKELPADQAKEETVFIGKVPIMLKSKYCI 194
Query: 466 LHNLNEFELNSLGECHVDQGGYFIIN 543
L +L+E L + EC D GGYFIIN
Sbjct: 195 LKDLSEQALYNWNECPYDSGGYFIIN 220
[153][TOP]
>UniRef100_A1CG49 DNA-directed RNA polymerase n=1 Tax=Aspergillus clavatus
RepID=A1CG49_ASPCL
Length = 1257
Score = 141 bits (356), Expect = 3e-32
Identities = 84/208 (40%), Positives = 119/208 (57%), Gaps = 32/208 (15%)
Frame = +1
Query: 16 ISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAP 195
I++ED W VI+++FD GLV QQL S++EFVS TMQ LV+E + L DQ +P D
Sbjct: 20 ITSEDCWTVISSFFDTKGLVSQQLDSFDEFVSSTMQELVEEQGQVTL---DQTLPPAD-- 74
Query: 196 DENTKVVI-----KFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTV 360
DE VV+ KFG + +S+P+ TE +G + P +ARLRNLTY++PLY +TK +
Sbjct: 75 DEVDPVVLRRYELKFGTVMLSRPSVTEGDGATTIMLPQEARLRNLTYASPLYLGITKRIM 134
Query: 361 R-----LVDPETGEEEATSEEPEK----------------------VFIGRVPVMLRSRF 459
+ D E E ++E K VFIG++P+ML+S++
Sbjct: 135 EGRERLIADREDDETVPDADEDRKARGTYLQWEQKELPADQAKEETVFIGKMPIMLKSKY 194
Query: 460 CLLHNLNEFELNSLGECHVDQGGYFIIN 543
C+L +L+E L + EC D GGYFIIN
Sbjct: 195 CILKDLSEQALYNWNECPYDSGGYFIIN 222
[154][TOP]
>UniRef100_C4JKI6 DNA-directed RNA polymerase II 138 kDa polypeptide n=1
Tax=Uncinocarpus reesii 1704 RepID=C4JKI6_UNCRE
Length = 884
Score = 140 bits (353), Expect = 6e-32
Identities = 77/206 (37%), Positives = 115/206 (55%), Gaps = 30/206 (14%)
Frame = +1
Query: 16 ISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAP 195
I++ED W VI+++F+ GLV QQL S++EF+S TMQ LV+E + L + P D P
Sbjct: 20 ITSEDCWTVISSFFESKGLVSQQLDSFDEFISTTMQELVEEQGQVTL--DQTIAPEEDDP 77
Query: 196 DENT--KVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLV 369
D + +KFG + +++P+ TE +G + P +ARLRNLTY++PLY +TK
Sbjct: 78 DPVLVRRYELKFGTVMLARPSMTEGDGATSIMLPQEARLRNLTYASPLYLGITKKVAEGR 137
Query: 370 D------------PETGEEEATS----------------EEPEKVFIGRVPVMLRSRFCL 465
+ E G+EE + E E +FIG++P+ML+S++C+
Sbjct: 138 ERSLAERDEDEEPEEKGDEERRARGTYLQWAPRALPEDEEGEENIFIGKMPIMLKSKYCI 197
Query: 466 LHNLNEFELNSLGECHVDQGGYFIIN 543
L +L E L + EC D GGYFIIN
Sbjct: 198 LKDLGEHALYNWNECPYDSGGYFIIN 223
[155][TOP]
>UniRef100_B0YC08 DNA-directed RNA polymerase n=3 Tax=Aspergillus fumigatus
RepID=B0YC08_ASPFC
Length = 1255
Score = 139 bits (350), Expect = 1e-31
Identities = 82/208 (39%), Positives = 121/208 (58%), Gaps = 32/208 (15%)
Frame = +1
Query: 16 ISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAP 195
I++ED W VI+++FD GLV QQL S++EF+S TMQ LV+E + L DQ +P +
Sbjct: 20 ITSEDCWTVISSFFDTKGLVSQQLDSFDEFISSTMQELVEEQGQVTL---DQTLP--PSE 74
Query: 196 DENTKVV-----IKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTV 360
DE+ VV +KFG + +S+P+ TE +G + P +ARLRNLTY++PLY +TK +
Sbjct: 75 DEDDPVVLRRYELKFGTVMLSRPSVTEGDGATTIMLPQEARLRNLTYASPLYLGITKRIM 134
Query: 361 ----RLV--------DPETGEEEAT---------------SEEPEKVFIGRVPVMLRSRF 459
RL+ P+ E+ + E VFIG++P+ML+S++
Sbjct: 135 EGRERLIADRDEDDAAPDADEDRKARGTYLQWEQKELPPDQAKEETVFIGKMPIMLKSKY 194
Query: 460 CLLHNLNEFELNSLGECHVDQGGYFIIN 543
C+L +L+E L + EC D GGYFIIN
Sbjct: 195 CILKDLSEQALYNWNECPYDSGGYFIIN 222
[156][TOP]
>UniRef100_Q2VA54 DNA-directed RNA polymerase n=1 Tax=Phaeosphaeria nodorum
RepID=Q2VA54_PHANO
Length = 1262
Score = 139 bits (349), Expect = 2e-31
Identities = 79/202 (39%), Positives = 116/202 (57%), Gaps = 25/202 (12%)
Frame = +1
Query: 13 DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDA 192
+I++ED W VI+++FD GLV QQL SY+EF T+Q +V E+ ++L Y P D+
Sbjct: 19 EITSEDCWAVISSFFDTKGLVSQQLDSYDEFTRNTIQDIVKENGTVILEQNTPYDPDEDS 78
Query: 193 -PDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVT------K 351
P + IKFG++ +++P TE +G L+P++ARLRNLTYS + D++ K
Sbjct: 79 DPIIKRRYEIKFGRVYLARPTHTEGDGTTVALFPHEARLRNLTYSGAMLADISNRIMVAK 138
Query: 352 TTVRLVDPETGEEEATS------------------EEPEKVFIGRVPVMLRSRFCLLHNL 477
T +V+ E + E T+ EE +VFIG++PVMLRS C L N
Sbjct: 139 ETQVVVEGEDEDMEVTNTVGGPTQIKWEREDVPMDEESARVFIGKLPVMLRSELCHLRNQ 198
Query: 478 NEFELNSLGECHVDQGGYFIIN 543
++ L + EC DQGGYF+IN
Sbjct: 199 SDEALFAFNECPYDQGGYFVIN 220
[157][TOP]
>UniRef100_Q1HDJ9 DNA-directed RNA polymerase n=1 Tax=Phaeosphaeria avenaria f. sp.
triticae RepID=Q1HDJ9_9PLEO
Length = 1262
Score = 139 bits (349), Expect = 2e-31
Identities = 79/202 (39%), Positives = 116/202 (57%), Gaps = 25/202 (12%)
Frame = +1
Query: 13 DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDA 192
+I++ED W VI+++FD GLV QQL SY+EF T+Q +V E+ ++L Y P D+
Sbjct: 19 EITSEDCWAVISSFFDTKGLVSQQLDSYDEFTRNTIQDIVKENGTVILEQNTPYDPDEDS 78
Query: 193 -PDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVT------K 351
P + IKFG++ +++P TE +G L+P++ARLRNLTYS + D++ K
Sbjct: 79 DPIIKRRYEIKFGRVYLARPTHTEGDGTTVALFPHEARLRNLTYSGAMLADISNRIMVAK 138
Query: 352 TTVRLVDPETGEEEATS------------------EEPEKVFIGRVPVMLRSRFCLLHNL 477
T +V+ E + E T+ EE +VFIG++PVMLRS C L N
Sbjct: 139 ETQVVVEGEDEDMEVTNTVGGPTQIKWEREDVPMDEESARVFIGKLPVMLRSELCHLRNQ 198
Query: 478 NEFELNSLGECHVDQGGYFIIN 543
++ L + EC DQGGYF+IN
Sbjct: 199 SDEALFAFNECPYDQGGYFVIN 220
[158][TOP]
>UniRef100_Q1HDJ8 DNA-directed RNA polymerase n=1 Tax=Phaeosphaeria nodorum
RepID=Q1HDJ8_PHANO
Length = 1262
Score = 139 bits (349), Expect = 2e-31
Identities = 79/202 (39%), Positives = 116/202 (57%), Gaps = 25/202 (12%)
Frame = +1
Query: 13 DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDA 192
+I++ED W VI+++FD GLV QQL SY+EF T+Q +V E+ ++L Y P D+
Sbjct: 19 EITSEDCWAVISSFFDTKGLVSQQLDSYDEFTRNTIQDIVKENGTVILEQNTPYDPDEDS 78
Query: 193 -PDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVT------K 351
P + IKFG++ +++P TE +G L+P++ARLRNLTYS + D++ K
Sbjct: 79 DPIIKRRYEIKFGRVYLARPTHTEGDGTTVALFPHEARLRNLTYSGAMLADISNRIMVAK 138
Query: 352 TTVRLVDPETGEEEATS------------------EEPEKVFIGRVPVMLRSRFCLLHNL 477
T +V+ E + E T+ EE +VFIG++PVMLRS C L N
Sbjct: 139 ETQVVVEGEDEDMEVTTTVGGPTQIKWEREDVPMDEESARVFIGKLPVMLRSELCHLRNQ 198
Query: 478 NEFELNSLGECHVDQGGYFIIN 543
++ L + EC DQGGYF+IN
Sbjct: 199 SDEALFAFNECPYDQGGYFVIN 220
[159][TOP]
>UniRef100_Q0U9V8 DNA-directed RNA polymerase n=1 Tax=Phaeosphaeria nodorum
RepID=Q0U9V8_PHANO
Length = 1252
Score = 139 bits (349), Expect = 2e-31
Identities = 79/202 (39%), Positives = 116/202 (57%), Gaps = 25/202 (12%)
Frame = +1
Query: 13 DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDA 192
+I++ED W VI+++FD GLV QQL SY+EF T+Q +V E+ ++L Y P D+
Sbjct: 19 EITSEDCWAVISSFFDTKGLVSQQLDSYDEFTRNTIQDIVKENGTVILEQNTPYDPDEDS 78
Query: 193 -PDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVT------K 351
P + IKFG++ +++P TE +G L+P++ARLRNLTYS + D++ K
Sbjct: 79 DPIIKRRYEIKFGRVYLARPTHTEGDGTTVALFPHEARLRNLTYSGAMLADISNRIMVAK 138
Query: 352 TTVRLVDPETGEEEATS------------------EEPEKVFIGRVPVMLRSRFCLLHNL 477
T +V+ E + E T+ EE +VFIG++PVMLRS C L N
Sbjct: 139 ETQVVVEGEDEDMEVTNTVGGPTQIKWEREDVPMDEESARVFIGKLPVMLRSELCHLRNQ 198
Query: 478 NEFELNSLGECHVDQGGYFIIN 543
++ L + EC DQGGYF+IN
Sbjct: 199 SDEALFAFNECPYDQGGYFVIN 220
[160][TOP]
>UniRef100_B6QUV1 DNA-directed RNA polymerase n=1 Tax=Penicillium marneffei ATCC
18224 RepID=B6QUV1_PENMQ
Length = 1254
Score = 139 bits (349), Expect = 2e-31
Identities = 79/202 (39%), Positives = 116/202 (57%), Gaps = 26/202 (12%)
Frame = +1
Query: 16 ISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAP 195
I++ED W VI++YFD GLV QQL S++EF+S TMQ LV+E + + + P D
Sbjct: 20 ITSEDCWTVISSYFDTKGLVSQQLDSFDEFISSTMQELVEEQGQVTI--DQTITPNEDEI 77
Query: 196 DENT--KVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTV--- 360
D + IK+G + +++P+F+E NG A L P +AR RNLTY++PLY +V +
Sbjct: 78 DPVVIRRYEIKYGTIMLARPSFSEINGAATLLLPMEARHRNLTYASPLYLNVQRRLTEGR 137
Query: 361 --RLVDPETGEEE-------------------ATSEEPEKVFIGRVPVMLRSRFCLLHNL 477
+ VD E +E + EE + +IGR+P+ML+S++CLL +L
Sbjct: 138 ERKAVDREGEGDENEEQKPGGTYLDWEEKPLVVSEEEAKGCYIGRIPIMLKSKYCLLRDL 197
Query: 478 NEFELNSLGECHVDQGGYFIIN 543
+E L + EC D GGYFIIN
Sbjct: 198 SEQSLYNWNECPYDSGGYFIIN 219
[161][TOP]
>UniRef100_A9UUX4 DNA-directed RNA polymerase (Fragment) n=1 Tax=Monosiga brevicollis
RepID=A9UUX4_MONBE
Length = 1166
Score = 138 bits (348), Expect = 2e-31
Identities = 78/183 (42%), Positives = 110/183 (60%), Gaps = 3/183 (1%)
Frame = +1
Query: 4 NDADISAED--AWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYV 177
+DADI D WEVINAYF E GLVRQQL S++ F++ T+Q+++ SP I + QY+
Sbjct: 2 DDADIDNWDEACWEVINAYFREKGLVRQQLDSFDHFITYTVQKIIKNSPPIEVQGRLQYL 61
Query: 178 PGRDAPDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTT 357
+ +E K I FGQ + P E +G ++PN RLRNLTY + + C++T T
Sbjct: 62 --SNEIEEPPKHTISFGQAGFALPQHKEEDGNYDHVFPNDCRLRNLTYQSLMQCEITH-T 118
Query: 358 VRLVDPETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEF-ELNSLGECHVDQGGYF 534
V +PETGE T +G+VP+MLRS++C L+ + F + + EC +D GGYF
Sbjct: 119 VEQKNPETGEVTTT-----PALLGKVPMMLRSKYCTLNKMETFRDFYDINECPLDPGGYF 173
Query: 535 IIN 543
IIN
Sbjct: 174 IIN 176
[162][TOP]
>UniRef100_B8MU25 DNA-directed RNA polymerase n=1 Tax=Talaromyces stipitatus ATCC
10500 RepID=B8MU25_TALSN
Length = 1256
Score = 137 bits (346), Expect = 4e-31
Identities = 82/204 (40%), Positives = 117/204 (57%), Gaps = 28/204 (13%)
Frame = +1
Query: 16 ISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAP 195
I++ED W VI++YFD GLV QQL S++EF+S TMQ LV+E + + + P D
Sbjct: 20 ITSEDCWTVISSYFDTKGLVSQQLDSFDEFISSTMQELVEEQGQVTI--DQTITPNEDEI 77
Query: 196 DENT--KVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDV----TKTT 357
D + IK+G + +++P+F+E NG A L P +AR RNLTY++PLY +V T+
Sbjct: 78 DPVVIRRYEIKYGTIMLARPSFSEINGAATLLLPMEARHRNLTYASPLYLNVQRRLTEGR 137
Query: 358 VRLVDPETGE------------------EEA----TSEEPEKVFIGRVPVMLRSRFCLLH 471
R V GE EE + EE + +IGR+P+ML+S++CLL
Sbjct: 138 ERKVADRDGEGLGDENEEQKPGGTYLEWEEKPLVISEEEAKGCYIGRIPIMLKSKYCLLR 197
Query: 472 NLNEFELNSLGECHVDQGGYFIIN 543
+L+E L + EC D GGYFIIN
Sbjct: 198 DLSEQSLYNWNECPYDSGGYFIIN 221
[163][TOP]
>UniRef100_Q872W7 DNA-directed RNA polymerase n=1 Tax=Neurospora crassa
RepID=Q872W7_NEUCR
Length = 1287
Score = 137 bits (345), Expect = 5e-31
Identities = 85/218 (38%), Positives = 121/218 (55%), Gaps = 42/218 (19%)
Frame = +1
Query: 16 ISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAP 195
I+ ED+WEVI++YFD GLV QQ+ S+NEF + T+Q L+DE D+ L D PG
Sbjct: 43 ITPEDSWEVISSYFDLKGLVSQQIDSFNEFTTDTVQSLIDEYADLTL---DHPSPG---D 96
Query: 196 DENTKVVIK-----FGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTT- 357
DE +++++ FG++ +S+P TE GE +L P + R RNLTYS P+YC VTK
Sbjct: 97 DEGREIILRRYDVHFGEIIISRPTLTEATGETISLLPYECRDRNLTYSAPIYCKVTKRAR 156
Query: 358 ---------VRLVDPE------TG---------EEEATSEEPEK------------VFIG 429
+L D E TG EEE+ EP K +F+G
Sbjct: 157 IAVSEKKPLNQLTDDEHDHMARTGEHPTALRWIEEESAPPEPPKDDKINPENLKGYLFLG 216
Query: 430 RVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
++P+M++S+ C L+ ++ L +L EC DQGGYFIIN
Sbjct: 217 KIPIMVKSKICHLYMEDDESLFTLNECPYDQGGYFIIN 254
[164][TOP]
>UniRef100_Q1HDK3 DNA-directed RNA polymerase n=1 Tax=Phaeosphaeria sp. S-93-48
RepID=Q1HDK3_9PLEO
Length = 1262
Score = 137 bits (345), Expect = 5e-31
Identities = 78/202 (38%), Positives = 115/202 (56%), Gaps = 25/202 (12%)
Frame = +1
Query: 13 DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDA 192
+I++ED W VI+++FD GLV QQL SY+EF T+Q +V E+ ++L Y P D+
Sbjct: 19 EITSEDCWAVISSFFDTKGLVSQQLDSYDEFTRNTIQDIVKENGTVILEQNTPYDPDEDS 78
Query: 193 -PDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVT------K 351
P + IKFG++ +++P TE +G L+P++ARLRNLTYS + D++ K
Sbjct: 79 DPIIKRRYEIKFGRVYLARPTHTEGDGTTVALFPHEARLRNLTYSGAMLADISNRIMVAK 138
Query: 352 TTVRLVDPETGEEEATS------------------EEPEKVFIGRVPVMLRSRFCLLHNL 477
T + + E + E T+ EE +VFIG++PVMLRS C L N
Sbjct: 139 ETQVVAEGEDEDMEVTNTVGGPTQIKWEREDVPMDEESARVFIGKLPVMLRSELCHLRNQ 198
Query: 478 NEFELNSLGECHVDQGGYFIIN 543
++ L + EC DQGGYF+IN
Sbjct: 199 SDEALFAFNECPYDQGGYFVIN 220
[165][TOP]
>UniRef100_Q1HDK2 DNA-directed RNA polymerase n=1 Tax=Phaeosphaeria avenaria f. sp.
triticae RepID=Q1HDK2_9PLEO
Length = 1262
Score = 137 bits (345), Expect = 5e-31
Identities = 78/202 (38%), Positives = 115/202 (56%), Gaps = 25/202 (12%)
Frame = +1
Query: 13 DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDA 192
+I++ED W VI+++FD GLV QQL SY+EF T+Q +V E+ ++L Y P D+
Sbjct: 19 EITSEDCWAVISSFFDTKGLVSQQLDSYDEFTRNTIQDIVKENGTVILEQNTPYDPDEDS 78
Query: 193 -PDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVT------K 351
P + IKFG++ +++P TE +G L+P++ARLRNLTYS + D++ K
Sbjct: 79 DPIIKRRYEIKFGRVYLARPTHTEGDGTTVALFPHEARLRNLTYSGAMLADISNRIMVAK 138
Query: 352 TTVRLVDPETGEEEATS------------------EEPEKVFIGRVPVMLRSRFCLLHNL 477
T + + E + E T+ EE +VFIG++PVMLRS C L N
Sbjct: 139 ETQVVAEGEDEDMEVTNTVGGPTQIKWEREDVPMDEESARVFIGKLPVMLRSELCHLRNQ 198
Query: 478 NEFELNSLGECHVDQGGYFIIN 543
++ L + EC DQGGYF+IN
Sbjct: 199 SDEALFAFNECPYDQGGYFVIN 220
[166][TOP]
>UniRef100_Q1HDI7 DNA-directed RNA polymerase n=1 Tax=Phaeosphaeria avenaria f. sp.
avenaria RepID=Q1HDI7_9PLEO
Length = 1262
Score = 137 bits (345), Expect = 5e-31
Identities = 78/202 (38%), Positives = 115/202 (56%), Gaps = 25/202 (12%)
Frame = +1
Query: 13 DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDA 192
+I++ED W VI+++FD GLV QQL SY+EF T+Q +V E+ ++L Y P D+
Sbjct: 19 EITSEDCWAVISSFFDTKGLVSQQLDSYDEFTRNTIQDIVKENGTVILEQNTPYDPDEDS 78
Query: 193 -PDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVT------K 351
P + IKFG++ +++P TE +G L+P++ARLRNLTYS + D++ K
Sbjct: 79 DPIIKRRYEIKFGRVYLARPTHTEGDGTTVALFPHEARLRNLTYSGAMLADISNRIMVAK 138
Query: 352 TTVRLVDPETGEEEATS------------------EEPEKVFIGRVPVMLRSRFCLLHNL 477
T + + E + E T+ EE +VFIG++PVMLRS C L N
Sbjct: 139 ETQVVAEGEDEDMEVTNTVGGPTQIKWEREDVPMDEESARVFIGKLPVMLRSELCHLRNQ 198
Query: 478 NEFELNSLGECHVDQGGYFIIN 543
++ L + EC DQGGYF+IN
Sbjct: 199 SDEALFAFNECPYDQGGYFVIN 220
[167][TOP]
>UniRef100_Q1HDI5 DNA-directed RNA polymerase n=1 Tax=Phaeosphaeria avenaria f. sp.
avenaria RepID=Q1HDI5_9PLEO
Length = 1262
Score = 137 bits (345), Expect = 5e-31
Identities = 78/202 (38%), Positives = 115/202 (56%), Gaps = 25/202 (12%)
Frame = +1
Query: 13 DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDA 192
+I++ED W VI+++FD GLV QQL SY+EF T+Q +V E+ ++L Y P D+
Sbjct: 19 EITSEDCWAVISSFFDTKGLVSQQLDSYDEFTRNTIQDIVKENGTVILEQNTPYDPDEDS 78
Query: 193 -PDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVT------K 351
P + IKFG++ +++P TE +G L+P++ARLRNLTYS + D++ K
Sbjct: 79 DPIIKRRYEIKFGRVYLARPTHTEGDGTTVALFPHEARLRNLTYSGAMLADISNRIMVAK 138
Query: 352 TTVRLVDPETGEEEATS------------------EEPEKVFIGRVPVMLRSRFCLLHNL 477
T + + E + E T+ EE +VFIG++PVMLRS C L N
Sbjct: 139 ETQVVAEGEDEDMEVTNTVGGPTQIKWEREDVPMDEESARVFIGKLPVMLRSELCHLRNQ 198
Query: 478 NEFELNSLGECHVDQGGYFIIN 543
++ L + EC DQGGYF+IN
Sbjct: 199 SDEALFAFNECPYDQGGYFVIN 220
[168][TOP]
>UniRef100_B2ADP9 DNA-directed RNA polymerase n=2 Tax=Podospora anserina
RepID=B2ADP9_PODAN
Length = 1278
Score = 137 bits (345), Expect = 5e-31
Identities = 87/216 (40%), Positives = 120/216 (55%), Gaps = 36/216 (16%)
Frame = +1
Query: 4 NDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPG 183
++A I+ ED W+VI+AYFD GLV QQ+ S++EF S T+Q LVDE D+ L D PG
Sbjct: 35 DEAAITPEDCWDVISAYFDMKGLVSQQIDSFDEFTSSTIQSLVDEYADLTL---DHPNPG 91
Query: 184 RDAPDENT--KVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTK-T 354
D + + I FG + +SKP TE +GE +L P + R RNLTYS P+YC V+K
Sbjct: 92 DDQGRDIALRRYDIHFGNVMISKPTLTEISGETTSLLPYECRDRNLTYSAPMYCKVSKRA 151
Query: 355 TVRLVDP---------------ETGE-------EEATSEEP-----------EKVFIGRV 435
V + +P ETGE EE S+ P + +F+G++
Sbjct: 152 RVAINEPVPLNELDDEQHELMRETGEHPMTIRWEEEESDMPGEGSKGENDRGDLIFLGKL 211
Query: 436 PVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
PVM++S+ C L+ ++ L L EC DQGGYFIIN
Sbjct: 212 PVMVKSQICHLYGEDDESLFVLNECPYDQGGYFIIN 247
[169][TOP]
>UniRef100_Q1HDK1 DNA-directed RNA polymerase n=1 Tax=Phaeosphaeria avenaria f. sp.
triticae RepID=Q1HDK1_9PLEO
Length = 1262
Score = 135 bits (341), Expect = 1e-30
Identities = 78/202 (38%), Positives = 113/202 (55%), Gaps = 25/202 (12%)
Frame = +1
Query: 13 DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDA 192
+I++ED W VI+++FD GLV QQL SY+EF T+Q +V E+ ++L Y P D+
Sbjct: 19 EITSEDCWAVISSFFDTKGLVSQQLDSYDEFTRNTIQDIVKENGTVILEQNTPYDPDEDS 78
Query: 193 -PDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCD------VTK 351
P + IKFG++ +++P TE +G L+P++ARLRNLTYS + D V K
Sbjct: 79 DPIIKRRYEIKFGRVYLARPTHTEGDGTTVALFPHEARLRNLTYSGAMLADISNRIMVAK 138
Query: 352 TTVRLVDPETGEEEATS------------------EEPEKVFIGRVPVMLRSRFCLLHNL 477
T + + E + E T+ +E +VFIG++PVMLRS C L N
Sbjct: 139 ETQVVAEGEDEDMEVTNTVGGPTQIKWEREDVPMDDEAARVFIGKLPVMLRSELCHLRNQ 198
Query: 478 NEFELNSLGECHVDQGGYFIIN 543
+ L + EC DQGGYF+IN
Sbjct: 199 TDEALFAFNECPYDQGGYFVIN 220
[170][TOP]
>UniRef100_C8VK81 DNA-directed RNA polymerase (EC 2.7.7.6)
[Source:UniProtKB/TrEMBL;Acc:Q9UV95] n=2 Tax=Emericella
nidulans RepID=C8VK81_EMENI
Length = 1252
Score = 135 bits (339), Expect = 3e-30
Identities = 81/208 (38%), Positives = 119/208 (57%), Gaps = 29/208 (13%)
Frame = +1
Query: 7 DADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGR 186
D I++ED W VI+++FD GLV QQL S++EF+S T+Q LV+E + L DQ +P
Sbjct: 17 DEGITSEDCWTVISSFFDTKGLVSQQLDSFDEFISSTLQELVEEQGQVTL---DQTIP-- 71
Query: 187 DAPDENTKVVI-----KFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTK 351
+ DE VV+ KFG + +S+P E +G A + P++ARLRN+TY++PLY + K
Sbjct: 72 PSEDEVDPVVVRRYELKFGTVMLSRPMAMEGDGAATIMLPHEARLRNMTYASPLYLGIKK 131
Query: 352 TTV----RLV----DPETGEEEATS----------------EEPEKVFIGRVPVMLRSRF 459
+ R+V D + G E+ + + E V IG++P+ML+S++
Sbjct: 132 KIMEGRERMVGDRDDDDMGNEDRKATGTYLQWEEMALPPDQAKEETVHIGKMPIMLKSKY 191
Query: 460 CLLHNLNEFELNSLGECHVDQGGYFIIN 543
CLL +L E L EC D GGYFIIN
Sbjct: 192 CLLRDLGEQALYDWNECPYDSGGYFIIN 219
[171][TOP]
>UniRef100_A4QV56 DNA-directed RNA polymerase n=1 Tax=Magnaporthe grisea
RepID=A4QV56_MAGGR
Length = 1276
Score = 134 bits (338), Expect = 3e-30
Identities = 81/215 (37%), Positives = 110/215 (51%), Gaps = 35/215 (16%)
Frame = +1
Query: 4 NDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPG 183
ND +I+AED W VI++YFDE GLV QQ+ SYNEF + T+Q +VDE + L +
Sbjct: 22 NDDEITAEDCWNVISSYFDEKGLVSQQIDSYNEFTTSTIQGIVDEYSVLTLDNPNPPDTF 81
Query: 184 RDAPDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTV- 360
P + I G + V++P E +G+ TL P + R RNLTYS PLY +TK
Sbjct: 82 EGKPIRLRRYEIMLGNILVTQPTVKETDGKVSTLVPYECRDRNLTYSCPLYVKLTKKVNV 141
Query: 361 ---------RLVDPETGEEEATSEEP-------------------------EKVFIGRVP 438
L D + E + T+E P + ++IG++P
Sbjct: 142 AVEEDIPLHELNDEQREEMQRTNEHPTTIRWELDRDKSHNPDEKISGEKMADMIYIGKIP 201
Query: 439 VMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
VM++SR C L + E EL L EC DQGGYFIIN
Sbjct: 202 VMVKSRICYLRSQPESELFLLNECPYDQGGYFIIN 236
[172][TOP]
>UniRef100_C9SGY6 DNA-directed RNA polymerase II subunit RPB2 n=1 Tax=Verticillium
albo-atrum VaMs.102 RepID=C9SGY6_9PEZI
Length = 1260
Score = 134 bits (337), Expect = 4e-30
Identities = 81/217 (37%), Positives = 119/217 (54%), Gaps = 37/217 (17%)
Frame = +1
Query: 4 NDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPG 183
+DA I+ ED W VI+++FD GLV QQ+ S++EF + T+Q L+DE I L DQ P
Sbjct: 17 DDASITPEDCWTVISSFFDSKGLVSQQVDSFDEFTTSTVQELIDEYSHITL---DQPNPA 73
Query: 184 RDAPDENT--KVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTT 357
D+ + +KFG + VS+P+ TE +G+ TL P + R RNLTY++PLY +TK
Sbjct: 74 SDSDRAIALRRYEVKFGTVMVSRPSITEADGKVSTLLPYECRDRNLTYASPLYVRITKKV 133
Query: 358 VRLVDPE----------------TG--------EEEATSEEP-----------EKVFIGR 432
V+ + TG EEE + ++P + +FIGR
Sbjct: 134 SIAVENQIPLNELDDEQHDEMGRTGEHPTRLEWEEEESGDDPGADKDKPEDMKDMIFIGR 193
Query: 433 VPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
+P+M++S+ C L +E +L L EC DQGGYF+IN
Sbjct: 194 MPIMVKSKICHLSRESENDLFMLNECPYDQGGYFVIN 230
[173][TOP]
>UniRef100_C4V8X8 DNA-directed RNA polymerase n=1 Tax=Nosema ceranae BRL01
RepID=C4V8X8_NOSCE
Length = 1143
Score = 131 bits (330), Expect = 3e-29
Identities = 71/174 (40%), Positives = 110/174 (63%), Gaps = 1/174 (0%)
Frame = +1
Query: 25 EDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAPDEN 204
E +W++I+ +F++ GLV QQ+ S+++FV MQ ++DESP I + + G +
Sbjct: 8 EYSWDIISKFFEQKGLVGQQIDSFDQFVKTKMQEVIDESPLITV--QSTLSAGNET---R 62
Query: 205 TKVVIKFGQLRVSKP-NFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVDPET 381
K+ +KFGQ+ VSKP ++TE +G TL PN+ARLR++TY + LY D+ KTT + E+
Sbjct: 63 KKITLKFGQIYVSKPPSYTEADGTTITLTPNEARLRDITYLSQLYIDIVKTT----ESES 118
Query: 382 GEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
G + ++ G +PVM++S +C + L+E EL +GEC D GGYFIIN
Sbjct: 119 GVVD--QHRYSRIPFGSLPVMVKSSYCSTYKLSEEELIKIGECEYDVGGYFIIN 170
[174][TOP]
>UniRef100_Q6QN96 DNA-directed RNA polymerase n=1 Tax=Cochliobolus heterostrophus
RepID=Q6QN96_COCHE
Length = 1208
Score = 129 bits (324), Expect = 1e-28
Identities = 77/204 (37%), Positives = 108/204 (52%), Gaps = 25/204 (12%)
Frame = +1
Query: 7 DADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGR 186
D + ED W VI+++FD GLV QQL SY+EF T+Q +V E+ ++L Y P
Sbjct: 19 DDRVLPEDCWAVISSFFDTKGLVSQQLDSYDEFTRNTIQDIVKENGSVILEQNTPYNPDE 78
Query: 187 -DAPDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTV- 360
D P + IKFG++ +++P TE +G LYP++ARLRNLTYS + D+ +
Sbjct: 79 DDNPIIKRRYEIKFGRVYLARPTHTEGDGTTVQLYPHEARLRNLTYSGAMLADIENRIMV 138
Query: 361 --RLVDPETGEEE---------------------ATSEEPEKVFIGRVPVMLRSRFCLLH 471
DPE E+E +VFIG++PVMLRS C L
Sbjct: 139 AREGRDPEGDEDEDMEGGYTGGASQIRWEREDMPMDDGTAARVFIGKLPVMLRSELCHLR 198
Query: 472 NLNEFELNSLGECHVDQGGYFIIN 543
++ +L +L EC DQGGYF+IN
Sbjct: 199 AQSDADLFALNECPYDQGGYFVIN 222
[175][TOP]
>UniRef100_Q9V115 DNA-directed RNA polymerase n=1 Tax=Pyrococcus abyssi
RepID=Q9V115_PYRAB
Length = 1117
Score = 128 bits (321), Expect = 3e-28
Identities = 72/181 (39%), Positives = 100/181 (55%)
Frame = +1
Query: 1 PNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVP 180
P +++ +D W V+ +Y+ E GLVRQ L SYN F+ +Q +VDE I
Sbjct: 4 PTVVEVTPDDLWIVMESYWQEKGLVRQHLDSYNAFIDRGLQEVVDEFGGIK--------- 54
Query: 181 GRDAPDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTV 360
D PD +KFG++RV +P F E +G+ LYP AR+RNLTYS PLY ++
Sbjct: 55 -PDIPDFE----VKFGKIRVGEPEFQEPHGQRKPLYPMDARIRNLTYSAPLYLEMIPVI- 108
Query: 361 RLVDPETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFII 540
+EP +V IG +P+ML+S+ C L+ L++ EL LGE D GGYFII
Sbjct: 109 ----------RGIEQEPVEVRIGELPIMLKSKVCRLYGLSDDELRQLGEDPKDPGGYFII 158
Query: 541 N 543
N
Sbjct: 159 N 159
[176][TOP]
>UniRef100_B6YT15 DNA-directed RNA polymerase n=1 Tax=Thermococcus onnurineus NA1
RepID=B6YT15_THEON
Length = 1120
Score = 128 bits (321), Expect = 3e-28
Identities = 72/181 (39%), Positives = 101/181 (55%)
Frame = +1
Query: 1 PNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVP 180
P D++ +D W V+ AY+ E GLVRQ L SYN F+ MQ++++E I
Sbjct: 4 PTVVDVTPDDLWLVMEAYWKEKGLVRQHLDSYNAFIDYGMQQVINEFGGIK--------- 54
Query: 181 GRDAPDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTV 360
D PD +KFG++R+ +P F E G+ LYP AR+RNLTYS PLY ++
Sbjct: 55 -PDIPDFE----VKFGKIRLGEPEFQEAQGQRKPLYPMDARIRNLTYSAPLYLELIPVV- 108
Query: 361 RLVDPETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFII 540
++EP +V IG +P+ML+S+ C L+ L++ EL LGE D GGYFII
Sbjct: 109 ----------NGIAQEPVEVRIGELPIMLKSKACRLYGLSDEELIKLGEDPKDPGGYFII 158
Query: 541 N 543
N
Sbjct: 159 N 159
[177][TOP]
>UniRef100_B2W4R0 DNA-directed RNA polymerase n=1 Tax=Pyrenophora tritici-repentis
Pt-1C-BFP RepID=B2W4R0_PYRTR
Length = 1208
Score = 127 bits (319), Expect = 5e-28
Identities = 74/198 (37%), Positives = 110/198 (55%), Gaps = 25/198 (12%)
Frame = +1
Query: 25 EDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGR-DAPDE 201
ED W VI+++FD GLV QQL SY+EF T+Q +V E+ ++L Y P D P
Sbjct: 25 EDCWAVISSFFDTKGLVSQQLDSYDEFTRNTIQDIVKENGSVILEQNQPYNPDEEDNPII 84
Query: 202 NTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLV---D 372
+ +KFG++ +++P TE +G LYP++ARLRNLTYS + D+ + D
Sbjct: 85 KRRYEMKFGRVYLARPTHTEGDGTTVQLYPHEARLRNLTYSGAMLADIENRVMVAREGRD 144
Query: 373 PETGEEEA-------------------TSEE--PEKVFIGRVPVMLRSRFCLLHNLNEFE 489
P+ ++E +S++ +VFIG++PVMLRS C L ++ +
Sbjct: 145 PDADDDEEMEGGYTGGQNQIRWERENMSSDDGAAARVFIGKLPVMLRSELCHLRAQSDAD 204
Query: 490 LNSLGECHVDQGGYFIIN 543
L +L EC DQGGYF+IN
Sbjct: 205 LFALNECPYDQGGYFVIN 222
[178][TOP]
>UniRef100_O59226 DNA-directed RNA polymerase n=1 Tax=Pyrococcus horikoshii
RepID=O59226_PYRHO
Length = 1117
Score = 126 bits (316), Expect = 1e-27
Identities = 71/181 (39%), Positives = 101/181 (55%)
Frame = +1
Query: 1 PNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVP 180
P +++ +D W V+ +Y++E GLVRQ L SYN F+ +Q +VDE I
Sbjct: 4 PTVVEVTPDDLWIVMESYWEEKGLVRQHLDSYNAFIERGLQEVVDEFGGIK--------- 54
Query: 181 GRDAPDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTV 360
D PD +KFG++RV +P F E +G+ LYP AR+RNLTYS PLY ++
Sbjct: 55 -PDIPDFE----VKFGKIRVGEPEFQEPHGQRKPLYPMDARIRNLTYSAPLYLEMIPVI- 108
Query: 361 RLVDPETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFII 540
++P +V IG +P+ML+S+ C L+ L++ EL LGE D GGYFII
Sbjct: 109 ----------RGIEQDPVEVRIGELPIMLKSKACRLYGLSDEELIKLGEDPKDPGGYFII 158
Query: 541 N 543
N
Sbjct: 159 N 159
[179][TOP]
>UniRef100_C6A1F9 DNA-directed RNA polymerase n=1 Tax=Thermococcus sibiricus MM 739
RepID=C6A1F9_THESM
Length = 1118
Score = 125 bits (314), Expect = 2e-27
Identities = 69/181 (38%), Positives = 101/181 (55%)
Frame = +1
Query: 1 PNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVP 180
P +++ +D W ++ AY+DE GLVRQ L SYN F+ MQ ++ E +
Sbjct: 4 PTIVEVTPDDLWHIMKAYWDEKGLVRQHLDSYNAFIEHGMQEVISEFEGVK--------- 54
Query: 181 GRDAPDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTV 360
D PD +KFG++R+ +P F E +G+ LYP AR+RNLTYS P++ +
Sbjct: 55 -PDIPDFE----VKFGRVRLGEPEFQEAHGQRKPLYPIDARIRNLTYSAPVFLGMIPVV- 108
Query: 361 RLVDPETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFII 540
+ +EP +V IG +PVML+S+ C L+NL++ EL + GE D GGYFII
Sbjct: 109 ----------KGIEQEPVEVRIGELPVMLKSKICRLYNLSDEELIAHGEDPKDPGGYFII 158
Query: 541 N 543
N
Sbjct: 159 N 159
[180][TOP]
>UniRef100_P31814 DNA-directed RNA polymerase subunit B n=1 Tax=Thermococcus celer
RepID=RPOB_THECE
Length = 1122
Score = 125 bits (314), Expect = 2e-27
Identities = 70/181 (38%), Positives = 99/181 (54%)
Frame = +1
Query: 1 PNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVP 180
P D++ +D W V+ AY+ E GLVRQ L SYN F+ MQ ++DE +
Sbjct: 6 PTVVDVTPDDLWLVMEAYWKEKGLVRQHLDSYNAFIDHGMQEVIDEFGGVK--------- 56
Query: 181 GRDAPDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTV 360
D PD +KFG++R+ +P F E G+ LYP AR+RNLTYS P+Y ++
Sbjct: 57 -PDIPDFE----VKFGKVRLGEPEFQEAQGQRKPLYPMDARIRNLTYSAPIYLELIPVV- 110
Query: 361 RLVDPETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFII 540
S+E +V IG +P+ML+S+ C L+ L++ EL LGE D GGYFI+
Sbjct: 111 ----------NGVSQEAVEVRIGELPIMLKSKACRLYGLSDEELIKLGEDPKDPGGYFIV 160
Query: 541 N 543
N
Sbjct: 161 N 161
[181][TOP]
>UniRef100_Q8U0M3 DNA-directed RNA polymerase n=1 Tax=Pyrococcus furiosus
RepID=Q8U0M3_PYRFU
Length = 1117
Score = 125 bits (313), Expect = 3e-27
Identities = 70/181 (38%), Positives = 101/181 (55%)
Frame = +1
Query: 1 PNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVP 180
P D++ +D W V+ +Y+ E GLVRQ L SYN F+ +Q +V+E I
Sbjct: 4 PTVVDVTPDDLWIVMESYWQEKGLVRQHLDSYNAFIERGLQEVVNEFGGIK--------- 54
Query: 181 GRDAPDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTV 360
D PD +KFG++RV +P F E +G+ LYP AR+RNLTY+ PLY ++
Sbjct: 55 -PDIPDFE----VKFGKIRVGEPEFQEPHGQRKPLYPMDARIRNLTYAAPLYLEMIPVI- 108
Query: 361 RLVDPETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFII 540
+ ++P +V IG +P+ML+S+ C L+ L++ EL LGE D GGYFII
Sbjct: 109 ----------KGVEQDPVEVRIGELPIMLKSKVCRLYGLSDEELIKLGEDPKDPGGYFII 158
Query: 541 N 543
N
Sbjct: 159 N 159
[182][TOP]
>UniRef100_C5LU72 DNA-directed RNA polymerase n=1 Tax=Perkinsus marinus ATCC 50983
RepID=C5LU72_9ALVE
Length = 1171
Score = 121 bits (303), Expect = 4e-26
Identities = 73/178 (41%), Positives = 100/178 (56%), Gaps = 36/178 (20%)
Frame = +1
Query: 118 MQRLVDESPDIVLIPEDQ----------YVP---------------------GRDAPDE- 201
MQ +VDE P I +IP++Q Y P GR+ P
Sbjct: 1 MQEIVDECPPITIIPQNQPVCRLNGLSQYDPNTSKQQQMQQNVGYVYELSRLGREGPGVY 60
Query: 202 -NTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVDPE 378
++ ++FGQL ++KP E +G +L PNQARLRNLTYS+P+Y +VT+TT L DP+
Sbjct: 61 MDSSFPVEFGQLSLNKPTVEEVDGAMTSLTPNQARLRNLTYSSPVYVNVTQTTYALADPD 120
Query: 379 --TGEEEATSEEP-EKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
E++ SE+ K+ IGR+P+ML+S +C L N E L +GEC DQGGYFIIN
Sbjct: 121 DPNSEKQLISEDSYSKILIGRIPMMLKSEYCWLKNQTERGLVEMGECVFDQGGYFIIN 178
[183][TOP]
>UniRef100_B5IVZ8 DNA-directed RNA polymerase n=1 Tax=Thermococcus barophilus MP
RepID=B5IVZ8_9EURY
Length = 1118
Score = 120 bits (302), Expect = 5e-26
Identities = 67/181 (37%), Positives = 99/181 (54%)
Frame = +1
Query: 1 PNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVP 180
P +++ +D W V+ +Y++E GLVRQ L SYN F+ MQ +++E I
Sbjct: 4 PTVVEVTPDDLWSVMESYWNEKGLVRQHLDSYNAFIDHGMQEVINEFGGIK--------- 54
Query: 181 GRDAPDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTV 360
D P+ +KFG++R+ +P F E G+ LYP AR+RNLTY+ P+Y ++
Sbjct: 55 -PDIPNFE----VKFGKIRLGEPEFQEAQGQRKPLYPMDARIRNLTYAAPIYLEMIPVV- 108
Query: 361 RLVDPETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFII 540
+EP +V IG +P+ML+S+ C L+ +E EL LGE D GGYFII
Sbjct: 109 ----------NGIEQEPVEVRIGELPIMLKSKACRLYGKSEEELIKLGEDPKDPGGYFII 158
Query: 541 N 543
N
Sbjct: 159 N 159
[184][TOP]
>UniRef100_Q5JE32 DNA-directed RNA polymerase n=1 Tax=Thermococcus kodakarensis
RepID=Q5JE32_PYRKO
Length = 1123
Score = 119 bits (297), Expect = 2e-25
Identities = 69/177 (38%), Positives = 99/177 (55%), Gaps = 1/177 (0%)
Frame = +1
Query: 16 ISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAP 195
++ ++ W V+ +Y+ E G VRQ L SYN F+ +Q +V+E ++V P
Sbjct: 12 LTPDELWLVMESYWKEKGFVRQHLDSYNAFIDHGLQDVVNEFGEVV-------------P 58
Query: 196 D-ENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVD 372
D N KV KFG++R+ +P F E G+ LYP AR+RNLTYS PLY ++
Sbjct: 59 DIPNFKV--KFGKIRIGQPEFQEAQGQRRPLYPMDARIRNLTYSAPLYLEMIPVV----- 111
Query: 373 PETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
+EP +V IG +P+ML+S+ C L+ L++ EL LGE D GGYFIIN
Sbjct: 112 ------NGIEQEPVEVRIGELPIMLKSKACRLYGLSDEELIKLGEDPKDPGGYFIIN 162
[185][TOP]
>UniRef100_A1RWW6 DNA-directed RNA polymerase n=1 Tax=Thermofilum pendens Hrk 5
RepID=A1RWW6_THEPD
Length = 1130
Score = 118 bits (296), Expect = 2e-25
Identities = 75/179 (41%), Positives = 101/179 (56%), Gaps = 1/179 (0%)
Frame = +1
Query: 10 ADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRD 189
A +S ED W V+ AY DE GLVRQ L S+N F+ +Q +VDE I +
Sbjct: 8 AKLSREDRWRVVKAYVDELGLVRQHLDSFNAFLERGLQEIVDEVGGIKV----------- 56
Query: 190 APDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLV 369
E+ V IKFG++ V +P F E +G L P ARLRN+TY+ PLY +T V
Sbjct: 57 ---ESQGVEIKFGKIEVGQPTFREADGSDLALTPMIARLRNITYAAPLYLTMT----LYV 109
Query: 370 DPETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNL-NEFELNSLGECHVDQGGYFIIN 543
D GEE T E V+IG +P+M++S+ C+L+ L +E E+ GE D GGYFI+N
Sbjct: 110 D---GEERRT----ESVYIGSLPIMVKSKKCVLYGLKSEDEIVKYGEDPYDPGGYFIVN 161
[186][TOP]
>UniRef100_C4PBI7 DNA-directed RNA polymerase n=1 Tax=Epichloe festucae
RepID=C4PBI7_9HYPO
Length = 1261
Score = 117 bits (294), Expect = 4e-25
Identities = 73/214 (34%), Positives = 106/214 (49%), Gaps = 34/214 (15%)
Frame = +1
Query: 4 NDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLI-PEDQYVP 180
+D I+ ED W VI+++F+ GLV QQ S++EF T+Q LV+E I L P P
Sbjct: 16 DDEGITPEDCWTVISSFFETKGLVSQQTDSFDEFTQTTIQDLVNEYSTITLDQPNPPSPP 75
Query: 181 GRDAPDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTV 360
G + IKFG + VS+P +E +G +L P + R RNLTY++PLY ++TK
Sbjct: 76 GIKIALRRYE--IKFGTVMVSRPTISETDGTVTSLLPYECRDRNLTYASPLYINITKKVS 133
Query: 361 RLV----------DPETGEEEATSEEPEK-----------------------VFIGRVPV 441
+ D + E T E P K VF+G++P+
Sbjct: 134 AAIEREVPLHEMDDAQQAEYAKTGENPTKLIWEQEESPEDDDAGKSEDWKNMVFVGKLPI 193
Query: 442 MLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
M++S+ C L + L + EC DQGGYF+IN
Sbjct: 194 MVKSKICHLSRETDESLFMVNECPYDQGGYFVIN 227
[187][TOP]
>UniRef100_C5A209 DNA-directed RNA polymerase n=1 Tax=Thermococcus gammatolerans EJ3
RepID=C5A209_THEGJ
Length = 1122
Score = 117 bits (294), Expect = 4e-25
Identities = 70/181 (38%), Positives = 100/181 (55%), Gaps = 4/181 (2%)
Frame = +1
Query: 13 DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDE----SPDIVLIPEDQYVP 180
D++ +D W V+ +Y+ E GLVRQ L SYN F+ +Q +++E PDI
Sbjct: 10 DVTPDDLWIVMESYWKEKGLVRQHLDSYNAFIEHGLQEVINEFGGVKPDI---------- 59
Query: 181 GRDAPDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTV 360
+KFG++R+ +P F E G+ LYP AR+RNLTYS PL+ +
Sbjct: 60 --------PNFEVKFGKIRLGEPIFQEAQGQRRPLYPMDARIRNLTYSAPLFLE------ 105
Query: 361 RLVDPETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFII 540
L+ G E+ EP +V IG +P+ML+S+ C L+ L++ EL LGE D GGYFII
Sbjct: 106 -LIPVVNGIEQ----EPVEVRIGELPLMLKSKACRLYGLSDEELIELGEDPKDPGGYFII 160
Query: 541 N 543
N
Sbjct: 161 N 161
[188][TOP]
>UniRef100_B7R288 DNA-directed RNA polymerase n=1 Tax=Thermococcus sp. AM4
RepID=B7R288_9EURY
Length = 1122
Score = 117 bits (294), Expect = 4e-25
Identities = 70/181 (38%), Positives = 100/181 (55%), Gaps = 4/181 (2%)
Frame = +1
Query: 13 DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDE----SPDIVLIPEDQYVP 180
D++ +D W V+ +Y+ E GLVRQ L SYN F+ +Q +++E PDI
Sbjct: 10 DVTPDDLWIVMESYWKEKGLVRQHLDSYNAFIEHGLQEVINEFGGVKPDI---------- 59
Query: 181 GRDAPDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTV 360
+KFG++R+ +P F E G+ LYP AR+RNLTYS PL+ +
Sbjct: 60 --------PNFEVKFGKIRLGEPIFQEAQGQRRPLYPMDARIRNLTYSAPLFLE------ 105
Query: 361 RLVDPETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFII 540
L+ G E+ EP +V IG +P+ML+S+ C L+ L++ EL LGE D GGYFII
Sbjct: 106 -LIPVVNGIEQ----EPVEVRIGELPLMLKSKACRLYGLSDEELIELGEDPKDPGGYFII 160
Query: 541 N 543
N
Sbjct: 161 N 161
[189][TOP]
>UniRef100_C7ZA30 Putative uncharacterized protein n=1 Tax=Nectria haematococca mpVI
77-13-4 RepID=C7ZA30_NECH7
Length = 1261
Score = 115 bits (289), Expect = 2e-24
Identities = 73/209 (34%), Positives = 106/209 (50%), Gaps = 33/209 (15%)
Frame = +1
Query: 16 ISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLI-PEDQYVPGRDA 192
I+ ED W VI+++F+ GLV QQ S++EF T+Q LV+E I L P PG
Sbjct: 21 ITPEDCWTVISSFFESKGLVSQQTDSFDEFTQTTIQDLVNEYSVISLDQPNPPSPPGVSI 80
Query: 193 PDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVD 372
+ IKFG + VS+P +E +G +L P + R RNLTY++PLY +TK V+
Sbjct: 81 ALRRYE--IKFGSVMVSRPTISETDGTVTSLLPYECRDRNLTYASPLYIKITKKVSVAVE 138
Query: 373 PET----------GEEEATSEEPEK----------------------VFIGRVPVMLRSR 456
E E + T E P K VF+G++P+M++S+
Sbjct: 139 KEVPLHEMDEDQQAEYKRTGENPTKLVWELEESGDDEGKADDSWKDMVFVGKLPIMVKSK 198
Query: 457 FCLLHNLNEFELNSLGECHVDQGGYFIIN 543
C L + ++ L + EC DQGGYF+IN
Sbjct: 199 ICHLSSEHDDNLFLVNECPYDQGGYFVIN 227
[190][TOP]
>UniRef100_UPI000196666C hypothetical protein METSMIF1_00898 n=1 Tax=Methanobrevibacter
smithii DSM 2374 RepID=UPI000196666C
Length = 514
Score = 114 bits (284), Expect = 6e-24
Identities = 63/173 (36%), Positives = 95/173 (54%)
Frame = +1
Query: 25 EDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAPDEN 204
E+ W++++A+FD++ LV ++SYN+F++ +Q ++D + I L EN
Sbjct: 3 ENNWKLVDAFFDKYDLVDHHIKSYNDFINSGIQNIIDITEPITL--------------EN 48
Query: 205 TKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVDPETG 384
K +K G+L + KP E +G +YP +ARLRNL YS +Y ++
Sbjct: 49 GKYTLKTGKLFIEKPFTKEADGSKSMIYPAEARLRNLNYSAHMYLEMALN---------- 98
Query: 385 EEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
EE EKV+IG +PVML+S C LH L++ EL GE D GGYFI+N
Sbjct: 99 -EEGEDNPLEKVYIGELPVMLKSDICHLHGLSDEELIEQGEDPQDLGGYFIVN 150
[191][TOP]
>UniRef100_A5ULN8 DNA-dependent RNA polymerase, subunit B, RpoB n=1
Tax=Methanobrevibacter smithii ATCC 35061
RepID=A5ULN8_METS3
Length = 514
Score = 114 bits (284), Expect = 6e-24
Identities = 63/173 (36%), Positives = 95/173 (54%)
Frame = +1
Query: 25 EDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAPDEN 204
E+ W++++A+FD++ LV ++SYN+F++ +Q ++D + I L EN
Sbjct: 3 ENNWKLVDAFFDKYDLVDHHIKSYNDFINSGIQNIIDITEPITL--------------EN 48
Query: 205 TKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVDPETG 384
K +K G+L + KP E +G +YP +ARLRNL YS +Y ++
Sbjct: 49 GKYTLKTGKLFIEKPFTKEADGSKSMIYPAEARLRNLNYSAHMYLEMALN---------- 98
Query: 385 EEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
EE EKV+IG +PVML+S C LH L++ EL GE D GGYFI+N
Sbjct: 99 -EEGEDNPLEKVYIGELPVMLKSDICHLHGLSDEELIEQGEDPQDLGGYFIVN 150
[192][TOP]
>UniRef100_B9AEP8 Putative uncharacterized protein n=1 Tax=Methanobrevibacter smithii
DSM 2375 RepID=B9AEP8_METSM
Length = 514
Score = 114 bits (284), Expect = 6e-24
Identities = 63/173 (36%), Positives = 95/173 (54%)
Frame = +1
Query: 25 EDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAPDEN 204
E+ W++++A+FD++ LV ++SYN+F++ +Q ++D + I L EN
Sbjct: 3 ENNWKLVDAFFDKYDLVDHHIKSYNDFINSGIQNIIDITEPITL--------------EN 48
Query: 205 TKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVDPETG 384
K +K G+L + KP E +G +YP +ARLRNL YS +Y ++
Sbjct: 49 GKYTLKTGKLFIEKPFTKEADGSKSMIYPAEARLRNLNYSAHMYLEMALN---------- 98
Query: 385 EEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
EE EKV+IG +PVML+S C LH L++ EL GE D GGYFI+N
Sbjct: 99 -EEGEDNPLEKVYIGELPVMLKSDICHLHGLSDEELIEQGEDPQDLGGYFIVN 150
[193][TOP]
>UniRef100_UPI0000E20419 PREDICTED: DNA directed RNA polymerase II polypeptide B isoform 1
n=1 Tax=Pan troglodytes RepID=UPI0000E20419
Length = 1099
Score = 112 bits (280), Expect = 2e-23
Identities = 54/112 (48%), Positives = 77/112 (68%)
Frame = +1
Query: 208 KVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVDPETGE 387
+ ++KF Q+ +SKP E +G + PN+ARLRNLTYS PLY D+TKT ++ GE
Sbjct: 8 RYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIK-----EGE 62
Query: 388 EEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
E+ ++ +K FIG++P+MLRS +CLL+ L + +L L EC +D GGYFIIN
Sbjct: 63 EQLQTQH-QKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIIN 113
[194][TOP]
>UniRef100_UPI00005A2A5D PREDICTED: similar to DNA-directed RNA polymerase II 140 kDa
polypeptide (RNA polymerase II subunit 2) (RPB2) isoform
17 n=1 Tax=Canis lupus familiaris RepID=UPI00005A2A5D
Length = 1099
Score = 112 bits (280), Expect = 2e-23
Identities = 54/112 (48%), Positives = 77/112 (68%)
Frame = +1
Query: 208 KVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVDPETGE 387
+ ++KF Q+ +SKP E +G + PN+ARLRNLTYS PLY D+TKT ++ GE
Sbjct: 8 RYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIK-----EGE 62
Query: 388 EEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
E+ ++ +K FIG++P+MLRS +CLL+ L + +L L EC +D GGYFIIN
Sbjct: 63 EQLQTQH-QKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIIN 113
[195][TOP]
>UniRef100_Q583H5 DNA-directed RNA polymerase n=1 Tax=Trypanosoma brucei
RepID=Q583H5_9TRYP
Length = 1190
Score = 112 bits (280), Expect = 2e-23
Identities = 69/184 (37%), Positives = 105/184 (57%), Gaps = 4/184 (2%)
Frame = +1
Query: 4 NDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPG 183
N ADI +ED WE+I+++F E GLV QQ+ SYN+F+ + + R+ +IV +DQ+ PG
Sbjct: 34 NTADIDSEDIWEIISSFFREKGLVHQQVDSYNDFL-LRIPRMARSLLEIVPRQDDQFDPG 92
Query: 184 RDAPDENTKVVIKFGQLRVSKPNFTENNGEAGT----LYPNQARLRNLTYSTPLYCDVTK 351
E + + + V P+ E +G + T L+PN+ RLR+LTY V +
Sbjct: 93 VHVESEPDQYRLSLEDVVVGNPSH-EMSGFSRTEMHPLFPNECRLRDLTYDA-----VAQ 146
Query: 352 TTVRLVDPETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGY 531
T+ + + EE+ + + +GR+P+ML+S C L N +E EL L EC DQGGY
Sbjct: 147 VTLAIRVYRSREEQPYRTFLQNMELGRIPIMLKSMRCNLLNKDEEELPRLNECPHDQGGY 206
Query: 532 FIIN 543
FI+N
Sbjct: 207 FIVN 210
[196][TOP]
>UniRef100_C9ZN35 DNA-directed RNA polymerase II subunit 2, putative n=1
Tax=Trypanosoma brucei gambiense DAL972
RepID=C9ZN35_TRYBG
Length = 1189
Score = 112 bits (280), Expect = 2e-23
Identities = 69/184 (37%), Positives = 105/184 (57%), Gaps = 4/184 (2%)
Frame = +1
Query: 4 NDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPG 183
N ADI +ED WE+I+++F E GLV QQ+ SYN+F+ + + R+ +IV +DQ+ PG
Sbjct: 33 NTADIDSEDIWEIISSFFREKGLVHQQVDSYNDFL-LRIPRMARSLLEIVPRQDDQFDPG 91
Query: 184 RDAPDENTKVVIKFGQLRVSKPNFTENNGEAGT----LYPNQARLRNLTYSTPLYCDVTK 351
E + + + V P+ E +G + T L+PN+ RLR+LTY V +
Sbjct: 92 VHVESEPDQYRLSLEDVVVGNPSH-EMSGFSRTEMHPLFPNECRLRDLTYDA-----VAQ 145
Query: 352 TTVRLVDPETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGY 531
T+ + + EE+ + + +GR+P+ML+S C L N +E EL L EC DQGGY
Sbjct: 146 VTLAIRVYRSREEQPYRTFLQNMELGRIPIMLKSMRCNLLNKDEEELPRLNECPHDQGGY 205
Query: 532 FIIN 543
FI+N
Sbjct: 206 FIVN 209
[197][TOP]
>UniRef100_C9J4M6 Putative uncharacterized protein POLR2B n=1 Tax=Homo sapiens
RepID=C9J4M6_HUMAN
Length = 207
Score = 112 bits (280), Expect = 2e-23
Identities = 54/112 (48%), Positives = 77/112 (68%)
Frame = +1
Query: 208 KVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVDPETGE 387
+ ++KF Q+ +SKP E +G + PN+ARLRNLTYS PLY D+TKT ++ GE
Sbjct: 8 RYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIK-----EGE 62
Query: 388 EEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
E+ ++ +K FIG++P+MLRS +CLL+ L + +L L EC +D GGYFIIN
Sbjct: 63 EQLQTQH-QKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIIN 113
[198][TOP]
>UniRef100_B4DH29 DNA-directed RNA polymerase n=1 Tax=Homo sapiens RepID=B4DH29_HUMAN
Length = 1099
Score = 112 bits (280), Expect = 2e-23
Identities = 54/112 (48%), Positives = 77/112 (68%)
Frame = +1
Query: 208 KVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVDPETGE 387
+ ++KF Q+ +SKP E +G + PN+ARLRNLTYS PLY D+TKT ++ GE
Sbjct: 8 RYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIK-----EGE 62
Query: 388 EEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
E+ ++ +K FIG++P+MLRS +CLL+ L + +L L EC +D GGYFIIN
Sbjct: 63 EQLQTQH-QKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIIN 113
[199][TOP]
>UniRef100_A9CSV4 DNA-directed RNA polymerase n=1 Tax=Enterocytozoon bieneusi H348
RepID=A9CSV4_ENTBH
Length = 1138
Score = 112 bits (280), Expect = 2e-23
Identities = 68/173 (39%), Positives = 101/173 (58%), Gaps = 1/173 (0%)
Frame = +1
Query: 25 EDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAPDEN 204
E+ W +I ++FD+ GLVRQQL S+N+FV + MQ ++DE+ I + + +P E
Sbjct: 19 ENNWAIITSFFDQKGLVRQQLDSFNQFVKIKMQEIIDENSIISV----KSIPTAGNSIER 74
Query: 205 TKVVIKFGQLRVSKPNF-TENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVDPET 381
++ + FGQ+ + P TE +G + + PN+ARLR+LTY ++ DV K E
Sbjct: 75 -EIKLYFGQISILGPPINTEIDGTSSKILPNEARLRDLTYWVNMFIDVKKAYY-----EN 128
Query: 382 GEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFII 540
G E S + +V G +PVM++S C L LN+ + LGEC DQGGYFII
Sbjct: 129 GIEVDVS-KTIRVPFGSLPVMVKSELCALKELNDKDNIRLGECPYDQGGYFII 180
[200][TOP]
>UniRef100_O27123 DNA-directed RNA polymerase subunit B'' n=1 Tax=Methanothermobacter
thermautotrophicus str. Delta H RepID=RPOB2_METTH
Length = 519
Score = 112 bits (279), Expect = 2e-23
Identities = 65/173 (37%), Positives = 95/173 (54%)
Frame = +1
Query: 25 EDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAPDEN 204
+ AW +++A+FD++ LV + SYN+FVS +Q ++D S I L E
Sbjct: 9 KSAWGLVDAFFDKYDLVDHHIHSYNDFVSNRIQEIIDTSEPIEL--------------EQ 54
Query: 205 TKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVDPETG 384
K ++ G++ + KP E +G +YP +ARLRNLTYS + ++ RL+
Sbjct: 55 GKYRVETGKVSIEKPFIKEADGSKSKIYPTEARLRNLTYSAHMSLEM-----RLL----- 104
Query: 385 EEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
+E E EKV+IG +PVML+S C LH L+ EL GE D GGYFI+N
Sbjct: 105 KEGGPETEFEKVYIGELPVMLKSEICHLHGLSRKELMEKGEDPADPGGYFIVN 157
[201][TOP]
>UniRef100_Q1L5Z0 DNA-directed RNA polymerase (Fragment) n=1 Tax=Nicotiana sylvestris
RepID=Q1L5Z0_NICSY
Length = 1087
Score = 110 bits (276), Expect = 5e-23
Identities = 54/96 (56%), Positives = 69/96 (71%)
Frame = +1
Query: 256 TENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVDPETGEEEATSEEPEKVFIGRV 435
TE++GE TL+P ARLRNLTYS PLY DVTK ++ GEE +++ KVFIG+V
Sbjct: 3 TESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIK--KGHDGEEVTETQDFTKVFIGKV 60
Query: 436 PVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
P+MLRS +C L+ +E +L LGEC +DQGGYFIIN
Sbjct: 61 PIMLRSSYCTLYQNSEKDLTELGECPLDQGGYFIIN 96
[202][TOP]
>UniRef100_Q58444 DNA-directed RNA polymerase subunit B'' n=1 Tax=Methanocaldococcus
jannaschii RepID=RPOB2_METJA
Length = 498
Score = 110 bits (276), Expect = 5e-23
Identities = 67/170 (39%), Positives = 97/170 (57%), Gaps = 1/170 (0%)
Frame = +1
Query: 37 EVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAPDENTKVV 216
E+++AYF EHGL+ Q++SYN+FV +Q+++DE I E + G
Sbjct: 6 ELVDAYFKEHGLIDHQIESYNDFVENRLQKIIDEVGYI----ETEITGGYK--------- 52
Query: 217 IKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVDPETGE-EE 393
+K G+++V KP E +G + P +AR+R+LTYS PLY ++T P GE E+
Sbjct: 53 VKLGKIKVGKPVIKEADGSIRPITPMEARIRDLTYSVPLYLEMT--------PIIGEGED 104
Query: 394 ATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
A E +V+IG +PVML S+ C L+ + EL LGE D GYFIIN
Sbjct: 105 AREGETVEVYIGELPVMLGSKICHLYGKSREELIDLGEDPEDPFGYFIIN 154
[203][TOP]
>UniRef100_P09844 DNA-directed RNA polymerase subunit B'' n=1 Tax=Methanothermobacter
thermautotrophicus str. Winter RepID=RPOB2_METTW
Length = 515
Score = 109 bits (273), Expect = 1e-22
Identities = 64/173 (36%), Positives = 94/173 (54%)
Frame = +1
Query: 25 EDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAPDEN 204
+ AW +++A+FD++ LV + SYN+FVS +Q ++D S I L E
Sbjct: 3 KSAWGLVDAFFDKYDLVDHHIHSYNDFVSNRIQEIIDTSEPIEL--------------EQ 48
Query: 205 TKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVDPETG 384
+ ++ G++ + KP E +G +YP +ARLRNLTYS + ++ RL+
Sbjct: 49 GQYTVETGKVTIEKPFIKEADGSKSKIYPTEARLRNLTYSAHMSLEM-----RLL----- 98
Query: 385 EEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
+E + E EKV IG +PVML+S C LH L EL GE D GGYFI+N
Sbjct: 99 KEGGSETEFEKVHIGELPVMLKSEICHLHGLGRDELIEKGEDPADLGGYFIVN 151
[204][TOP]
>UniRef100_C7P939 RNA polymerase beta subunit n=1 Tax=Methanocaldococcus fervens AG86
RepID=C7P939_METFA
Length = 497
Score = 109 bits (272), Expect = 1e-22
Identities = 64/169 (37%), Positives = 95/169 (56%)
Frame = +1
Query: 37 EVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAPDENTKVV 216
E+++AYF EHGL+ Q++SYN+FV +Q+++DE G + +
Sbjct: 3 ELVDAYFKEHGLIDHQIESYNDFVENRLQKIIDE-------------VGYIETEISGGFK 49
Query: 217 IKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVDPETGEEEA 396
+K G++++ KP E +G + P +AR+R+LTYS PLY ++T GEEE
Sbjct: 50 VKLGKVKIGKPVIKEADGSIRPITPMEARIRDLTYSVPLYLEMTPII------GEGEEEV 103
Query: 397 TSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
E E V+IG +PVML S+ C L+ ++ EL LGE D GYFIIN
Sbjct: 104 VGETVE-VYIGELPVMLGSKICHLYGKSKEELIELGEDPEDPFGYFIIN 151
[205][TOP]
>UniRef100_C5U6G2 RNA polymerase beta subunit n=1 Tax=Methanocaldococcus infernus ME
RepID=C5U6G2_9EURY
Length = 493
Score = 109 bits (272), Expect = 1e-22
Identities = 68/169 (40%), Positives = 98/169 (57%), Gaps = 1/169 (0%)
Frame = +1
Query: 40 VINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAPDENTKVVI 219
+I+AYF EH LV QL+SYN+FV +Q++VDE + D +P E KV
Sbjct: 1 MIDAYFKEHSLVEHQLESYNDFVENRLQKIVDEIGYV-----DTDIP------EGFKV-- 47
Query: 220 KFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVDPETGEE-EA 396
KFG++++ KP E +G + P +AR+R +TYS P+Y ++T P G+E E
Sbjct: 48 KFGKIKLGKPIIKEADGSIREITPMEARIREITYSVPIYLEMT--------PIYGKEGEE 99
Query: 397 TSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
E V+IG +PVML S+ CLL+ +E E+ +GE D+ GYFIIN
Sbjct: 100 REGETLDVYIGELPVMLGSKICLLYGKSEEEIIKMGEDPRDRFGYFIIN 148
[206][TOP]
>UniRef100_C3N7P9 DNA-directed RNA polymerase n=2 Tax=Sulfolobus islandicus
RepID=C3N7P9_SULIY
Length = 1131
Score = 107 bits (268), Expect = 4e-22
Identities = 61/178 (34%), Positives = 94/178 (52%)
Frame = +1
Query: 10 ADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRD 189
+++S ++ W+VI AYF GLVRQ L SYN+FV +Q ++DE +I
Sbjct: 6 SNLSIDEKWKVIEAYFKSKGLVRQHLDSYNDFVRNKLQEIIDEQGEI------------- 52
Query: 190 APDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLV 369
P E + ++ G++R+ KP E++ + P +ARLRNLTY+ PL+ +
Sbjct: 53 -PTEIPGLKVRLGKIRIGKPRVRESDRGEREISPMEARLRNLTYAAPLWLTMIPV----- 106
Query: 370 DPETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
E EPE+V+IG +P+ML+S + +L +GE D GGYFI+N
Sbjct: 107 ------ENNIEAEPEEVYIGDLPIMLKSAIDPISQYTLDKLIEIGEDPKDPGGYFIVN 158
[207][TOP]
>UniRef100_C3MY98 DNA-directed RNA polymerase n=3 Tax=Sulfolobus islandicus
RepID=C3MY98_SULIM
Length = 1131
Score = 107 bits (268), Expect = 4e-22
Identities = 61/178 (34%), Positives = 94/178 (52%)
Frame = +1
Query: 10 ADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRD 189
+++S ++ W+VI AYF GLVRQ L SYN+FV +Q ++DE +I
Sbjct: 6 SNLSIDEKWKVIEAYFKSKGLVRQHLDSYNDFVRNKLQEIIDEQGEI------------- 52
Query: 190 APDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLV 369
P E + ++ G++R+ KP E++ + P +ARLRNLTY+ PL+ +
Sbjct: 53 -PTEIPGLKVRLGKIRIGKPRVRESDRGEREISPMEARLRNLTYAAPLWLTMIPV----- 106
Query: 370 DPETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
E EPE+V+IG +P+ML+S + +L +GE D GGYFI+N
Sbjct: 107 ------ENNIEAEPEEVYIGDLPIMLKSAIDPISQYTLDKLIEIGEDPKDPGGYFIVN 158
[208][TOP]
>UniRef100_C3MRK2 DNA-directed RNA polymerase n=1 Tax=Sulfolobus islandicus L.S.2.15
RepID=C3MRK2_SULIL
Length = 1131
Score = 107 bits (268), Expect = 4e-22
Identities = 61/178 (34%), Positives = 94/178 (52%)
Frame = +1
Query: 10 ADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRD 189
+++S ++ W+VI AYF GLVRQ L SYN+FV +Q ++DE +I
Sbjct: 6 SNLSIDEKWKVIEAYFKSKGLVRQHLDSYNDFVRNKLQEIIDEQGEI------------- 52
Query: 190 APDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLV 369
P E + ++ G++R+ KP E++ + P +ARLRNLTY+ PL+ +
Sbjct: 53 -PTEIPGLKVRLGKIRIGKPRVRESDRGEREISPMEARLRNLTYAAPLWLTMIPV----- 106
Query: 370 DPETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
E EPE+V+IG +P+ML+S + +L +GE D GGYFI+N
Sbjct: 107 ------ENNIEAEPEEVYIGDLPIMLKSAIDPISQYTLDKLIEIGEDPKDPGGYFIVN 158
[209][TOP]
>UniRef100_B8YB55 DNA-directed RNA polymerase n=1 Tax=Sulfolobus shibatae B12
RepID=B8YB55_SULSH
Length = 1131
Score = 107 bits (268), Expect = 4e-22
Identities = 61/178 (34%), Positives = 94/178 (52%)
Frame = +1
Query: 10 ADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRD 189
+++S ++ W+VI AYF GLVRQ L SYN+FV +Q ++DE +I
Sbjct: 6 SNLSIDERWKVIEAYFKSKGLVRQHLDSYNDFVRNKLQEIIDEQGEI------------- 52
Query: 190 APDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLV 369
P E + ++ G++R+ KP E++ + P +ARLRNLTY+ PL+ +
Sbjct: 53 -PTEIPGLKVRLGKIRIGKPRVRESDRGEREISPMEARLRNLTYAAPLWLTMIPV----- 106
Query: 370 DPETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
E EPE+V+IG +P+ML+S + +L +GE D GGYFI+N
Sbjct: 107 ------ENNIEAEPEEVYIGDLPIMLKSAIDPISQYTLDKLIEIGEDPKDPGGYFIVN 158
[210][TOP]
>UniRef100_Q2NEK2 RpoB2 n=1 Tax=Methanosphaera stadtmanae DSM 3091 RepID=Q2NEK2_METST
Length = 502
Score = 106 bits (265), Expect = 1e-21
Identities = 58/173 (33%), Positives = 96/173 (55%)
Frame = +1
Query: 25 EDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAPDEN 204
++AW +++++FDE+ +V ++SYN+F+ +Q +VD + I L ++
Sbjct: 3 KNAWSLVDSFFDEYDIVDHHIRSYNDFLDNKIQEIVDITEPITL--------------DH 48
Query: 205 TKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVDPETG 384
+ IK G + + KP E +G + P++ARLRNL YS +Y D+
Sbjct: 49 GEYTIKTGDVEIVKPFIKEADGSKSIIEPSEARLRNLNYSAHMYLDMALV---------- 98
Query: 385 EEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
+ ++ E EKV+IG +PVML+S+ C L L++ EL +GE D GGYFI+N
Sbjct: 99 KGDSDDYEMEKVYIGELPVMLKSKACHLCGLSDEELEKVGEDPQDPGGYFIVN 151
[211][TOP]
>UniRef100_Q980R0 DNA-directed RNA polymerase, subunit B'' (RpoB2) n=1 Tax=Sulfolobus
solfataricus RepID=Q980R0_SULSO
Length = 480
Score = 106 bits (264), Expect = 1e-21
Identities = 60/178 (33%), Positives = 93/178 (52%)
Frame = +1
Query: 10 ADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRD 189
++++ ++ W VI AYF GLVRQ L SYN+FV +Q ++DE +I
Sbjct: 3 SNLTIDERWRVIEAYFKSKGLVRQHLDSYNDFVRNKLQEIIDEQGEI------------- 49
Query: 190 APDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLV 369
P E + ++ G++R+ KP E++ + P +ARLRNLTY+ PL+ +
Sbjct: 50 -PTEIPGLKVRLGKIRIGKPRVRESDRGEREISPMEARLRNLTYAAPLWLTMIPV----- 103
Query: 370 DPETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
E EPE+V+IG +P+ML+S + +L +GE D GGYFI+N
Sbjct: 104 ------ENNIEAEPEEVYIGDLPIMLKSAIDPISQYTLDKLIEIGEDPKDPGGYFIVN 155
[212][TOP]
>UniRef100_C5SSJ4 DNA-directed RNA polymerase n=1 Tax=Sulfolobus solfataricus 98/2
RepID=C5SSJ4_SULSO
Length = 1124
Score = 106 bits (264), Expect = 1e-21
Identities = 60/178 (33%), Positives = 93/178 (52%)
Frame = +1
Query: 10 ADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRD 189
++++ ++ W VI AYF GLVRQ L SYN+FV +Q ++DE +I
Sbjct: 3 SNLTIDERWRVIEAYFKSKGLVRQHLDSYNDFVRNKLQEIIDEQGEI------------- 49
Query: 190 APDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLV 369
P E + ++ G++R+ KP E++ + P +ARLRNLTY+ PL+ +
Sbjct: 50 -PTEIPGLKVRLGKIRIGKPRVRESDRGEREISPMEARLRNLTYAAPLWLTMIPV----- 103
Query: 370 DPETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
E EPE+V+IG +P+ML+S + +L +GE D GGYFI+N
Sbjct: 104 ------ENNIEAEPEEVYIGDLPIMLKSAIDPISQYTLDKLIEIGEDPKDPGGYFIVN 155
[213][TOP]
>UniRef100_A4I6A8 DNA-directed RNA polymerase n=1 Tax=Leishmania infantum
RepID=A4I6A8_LEIIN
Length = 1181
Score = 105 bits (263), Expect = 2e-21
Identities = 67/185 (36%), Positives = 102/185 (55%), Gaps = 4/185 (2%)
Frame = +1
Query: 1 PNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVP 180
PND D+ +ED WEVI+++F E GLV QQL SYN+F+ + + +++ ES ++ +DQY P
Sbjct: 25 PND-DLDSEDIWEVISSFFREKGLVHQQLDSYNDFL-MRIPKMI-ESMAVIPRQDDQYDP 81
Query: 181 GRDAPDENTKVVIKFGQLRVSKPNFTENNGEAG----TLYPNQARLRNLTYSTPLYCDVT 348
G ++ + + + + P+ ++ AG L+PN+ RLR++TY +
Sbjct: 82 GVTMEEQRDQPRLVLQDVVIGNPSHQTHSYFAGGPLPPLFPNECRLRDMTYDAQAQVTLG 141
Query: 349 KTTVRLVDPETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGG 528
V L P T V +GR+P+ML+S C L +E EL L EC DQGG
Sbjct: 142 ---VELYHPHADTPHDTFLR--NVELGRIPIMLKSMRCNLSGKDEDELPRLNECPHDQGG 196
Query: 529 YFIIN 543
YF+IN
Sbjct: 197 YFVIN 201
[214][TOP]
>UniRef100_A4HIZ1 DNA-directed RNA polymerase n=1 Tax=Leishmania braziliensis
RepID=A4HIZ1_LEIBR
Length = 1185
Score = 105 bits (263), Expect = 2e-21
Identities = 67/185 (36%), Positives = 102/185 (55%), Gaps = 4/185 (2%)
Frame = +1
Query: 1 PNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVP 180
PND D+ +ED WEVI+++F E GLV QQL SYN+F+ + + +++ ES ++ +DQY P
Sbjct: 29 PND-DLDSEDIWEVISSFFREKGLVHQQLDSYNDFL-MRIPKMI-ESMAVIPRQDDQYDP 85
Query: 181 GRDAPDENTKVVIKFGQLRVSKPNFTENNGEAG----TLYPNQARLRNLTYSTPLYCDVT 348
G ++ + + + + P+ ++ AG L+PN+ RLR++TY +
Sbjct: 86 GVTMEEQRDQPRLVLQDVVIGNPSHQTHSYFAGGPLPPLFPNECRLRDMTYDAQAQVTLG 145
Query: 349 KTTVRLVDPETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGG 528
V L P T V +GR+P+ML+S C L +E EL L EC DQGG
Sbjct: 146 ---VELYHPHADTPHDTFLR--NVELGRIPIMLKSMRCNLSGKDEDELPRLNECPHDQGG 200
Query: 529 YFIIN 543
YF+IN
Sbjct: 201 YFVIN 205
[215][TOP]
>UniRef100_A0B556 DNA-directed RNA polymerase, subunit B' n=1 Tax=Methanosaeta
thermophila PT RepID=A0B556_METTP
Length = 496
Score = 105 bits (263), Expect = 2e-21
Identities = 64/165 (38%), Positives = 93/165 (56%)
Frame = +1
Query: 49 AYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAPDENTKVVIKFG 228
AYF + LV + S+NEF+ +Q+++DE I E+ YV K G
Sbjct: 10 AYFTKDKLVHHHINSFNEFIDRGLQKVIDEVRIIETNIENTYV--------------KLG 55
Query: 229 QLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVDPETGEEEATSEE 408
++RV KP E +G LYPN ARLRNLTY++P+ K + +VD GEE+ E
Sbjct: 56 KIRVEKPVVMEADGSVERLYPNDARLRNLTYASPI-----KLEMSIVD--RGEEK----E 104
Query: 409 PEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
P + IG +P+M+ S+ C L+ ++E E+ S GE +D GGYFI+N
Sbjct: 105 PVEAMIGMLPIMVMSKVCNLYGMSEEEMVSYGEDPLDPGGYFIVN 149
[216][TOP]
>UniRef100_A6UV52 RNA polymerase beta subunit n=1 Tax=Methanococcus aeolicus Nankai-3
RepID=A6UV52_META3
Length = 510
Score = 105 bits (262), Expect = 2e-21
Identities = 61/168 (36%), Positives = 93/168 (55%)
Frame = +1
Query: 40 VINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAPDENTKVVI 219
+++ +F E+ LV + SYN+FV ++Q+++DE+ P + V G +
Sbjct: 6 IVDEFFKENSLVEHHINSYNKFVENSIQKVIDEAA-----PIEAEVKGG--------FKV 52
Query: 220 KFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVDPETGEEEAT 399
KFG++RV KP E +G +YP +AR+RNL+YS PLY ++T D E + E
Sbjct: 53 KFGKVRVGKPINKEADGSVKEIYPVEARIRNLSYSAPLYLEITPIMGGGEDEEGNKYEVE 112
Query: 400 SEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
E + +IG +PVML S C L+ +E EL +GE D GYFI+N
Sbjct: 113 EGETVEAYIGELPVMLGSIICHLNGKSEDELVKMGEDARDPMGYFIVN 160
[217][TOP]
>UniRef100_Q4Q6P8 DNA-directed RNA polymerase n=1 Tax=Leishmania major
RepID=Q4Q6P8_LEIMA
Length = 1185
Score = 105 bits (261), Expect = 3e-21
Identities = 66/185 (35%), Positives = 101/185 (54%), Gaps = 4/185 (2%)
Frame = +1
Query: 1 PNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVP 180
PND D+ +ED WEVI+++F E GLV QQL SYN+F+ + + +++ ES ++ +DQY P
Sbjct: 29 PND-DLDSEDIWEVISSFFREKGLVHQQLDSYNDFL-MRIPKMI-ESMAVIPRQDDQYDP 85
Query: 181 GRDAPDENTKVVIKFGQLRVSKPNFTENN----GEAGTLYPNQARLRNLTYSTPLYCDVT 348
G ++ + + + + P+ ++ G L+PN+ RLR++TY +
Sbjct: 86 GVTMEEQRDQPRLVLQDVVIGNPSHQTHSYFTGGPLPPLFPNECRLRDMTYDAQAQVTLG 145
Query: 349 KTTVRLVDPETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGG 528
V L P T V +GR+P+ML+S C L +E EL L EC DQGG
Sbjct: 146 ---VELYHPHADTPHDTFLR--NVELGRIPIMLKSMRCNLSGKDEDELPRLNECPHDQGG 200
Query: 529 YFIIN 543
YF+IN
Sbjct: 201 YFVIN 205
[218][TOP]
>UniRef100_Q4CRQ2 DNA-directed RNA polymerase II subunit 2, putative (Fragment) n=1
Tax=Trypanosoma cruzi RepID=Q4CRQ2_TRYCR
Length = 617
Score = 104 bits (260), Expect = 4e-21
Identities = 61/180 (33%), Positives = 99/180 (55%), Gaps = 3/180 (1%)
Frame = +1
Query: 13 DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDA 192
DI +ED WE+I+++F E GLV QQ+ SYN+F+ + + R+ +IV ++Q+ PG
Sbjct: 33 DIDSEDIWEIISSFFREKGLVHQQIDSYNDFL-LRIPRMARSLLEIVPRQDEQFEPGTQT 91
Query: 193 PDENTKVVIKFGQLRVSKPNFTENN---GEAGTLYPNQARLRNLTYSTPLYCDVTKTTVR 363
E + + + + P+ + E L+PN+ RLR+LTY + T+
Sbjct: 92 ETEPDQYRLSLEDVVIGNPSHEVSGFSRREMHPLFPNECRLRDLTYDAN-----AQVTLG 146
Query: 364 LVDPETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
+ + EE+ + + +GR+P+ML+S C L N +E EL L EC DQGGYF+I+
Sbjct: 147 IRVYRSREEQPYRTFLQNMELGRIPIMLKSMRCNLQNKDEDELPRLNECPHDQGGYFVIS 206
[219][TOP]
>UniRef100_Q1L6C3 DNA-directed RNA polymerase (Fragment) n=1 Tax=Homalocladium
platycladum RepID=Q1L6C3_9CARY
Length = 875
Score = 104 bits (259), Expect = 5e-21
Identities = 51/91 (56%), Positives = 65/91 (71%)
Frame = +1
Query: 271 EAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVDPETGEEEATSEEPEKVFIGRVPVMLR 450
E TL+P ARLRNLTYS PLY DVTK ++ GEE +++ KVFIG+VP+MLR
Sbjct: 1 ETATLFPKAARLRNLTYSAPLYVDVTKRVIK--KGHDGEEVTETQDFTKVFIGKVPIMLR 58
Query: 451 SRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
S +C L++ +E +L LGEC +DQGGYFIIN
Sbjct: 59 SSYCTLYHNSEKDLTELGECPLDQGGYFIIN 89
[220][TOP]
>UniRef100_C9RDL0 RNA polymerase beta subunit n=1 Tax=Methanocaldococcus vulcanius M7
RepID=C9RDL0_9EURY
Length = 495
Score = 103 bits (258), Expect = 6e-21
Identities = 62/170 (36%), Positives = 94/170 (55%), Gaps = 1/170 (0%)
Frame = +1
Query: 37 EVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAPDENTKVV 216
E+I+AYF EHGL+ Q++SYN+FV +Q ++DE G + +
Sbjct: 3 EMIDAYFKEHGLIDHQIESYNDFVENRLQSIIDE-------------VGYIETEISGGYK 49
Query: 217 IKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVDPETGE-EE 393
+K G++++ KP E +G + + P +AR+R+LTYS PLY ++ P GE EE
Sbjct: 50 VKLGKIKIGKPVIKEADGSSRKITPMEARIRDLTYSVPLYLEMI--------PIIGEGEE 101
Query: 394 ATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
+ +V+IG +PVML S+ C L+ + EL +GE D GYFIIN
Sbjct: 102 EREGDVVEVYIGELPVMLGSKICHLYGKSREELIDMGEDPEDPLGYFIIN 151
[221][TOP]
>UniRef100_Q1L6B6 RNA polymerase II second largest subunit (Fragment) n=1
Tax=Nepenthes maxima RepID=Q1L6B6_9CARY
Length = 667
Score = 103 bits (257), Expect = 8e-21
Identities = 51/91 (56%), Positives = 64/91 (70%)
Frame = +1
Query: 271 EAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVDPETGEEEATSEEPEKVFIGRVPVMLR 450
E TL+P ARLRNLTYS PLY DVTK ++ GEE + +++ KVFIG+VP+MLR
Sbjct: 1 ETATLFPKAARLRNLTYSAPLYVDVTKRVIK--KGHDGEEVSEAQDFTKVFIGKVPIMLR 58
Query: 451 SRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
S +C L+ +E +L LGEC DQGGYFIIN
Sbjct: 59 SSYCTLYQNSEKDLTELGECPYDQGGYFIIN 89
[222][TOP]
>UniRef100_Q1L5B7 RNA polymerase II second largest subunit (Fragment) n=1
Tax=Camellia japonica RepID=Q1L5B7_9ERIC
Length = 417
Score = 103 bits (256), Expect = 1e-20
Identities = 51/91 (56%), Positives = 63/91 (69%)
Frame = +1
Query: 271 EAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVDPETGEEEATSEEPEKVFIGRVPVMLR 450
E TL+P ARLRNLTYS PLY DVTK ++ GEE +++ KVFIG+VP+MLR
Sbjct: 1 ETATLFPKAARLRNLTYSAPLYVDVTKRVIK--KGHDGEEVTETQDFTKVFIGKVPIMLR 58
Query: 451 SRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
S +C L+ +E +L LGEC DQGGYFIIN
Sbjct: 59 SSYCTLYQNSEKDLTELGECPYDQGGYFIIN 89
[223][TOP]
>UniRef100_A4YCQ8 DNA-directed RNA polymerase n=1 Tax=Metallosphaera sedula DSM 5348
RepID=A4YCQ8_METS5
Length = 1124
Score = 102 bits (255), Expect = 1e-20
Identities = 59/176 (33%), Positives = 92/176 (52%)
Frame = +1
Query: 16 ISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAP 195
+S +D W ++ AYF GLVRQ L S+N+F+ +Q ++DE +I+ +PG
Sbjct: 2 LSVDDRWVIVEAYFKSRGLVRQHLDSFNDFIKNKLQEIIDEQGEII-----TEIPG---- 52
Query: 196 DENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVDP 375
+ I+ G++RV KP E + + P +ARLRNLTY+ P++ +T
Sbjct: 53 -----LKIRLGKIRVGKPRVREADKGDKEITPMEARLRNLTYAAPIFLTMTPV------- 100
Query: 376 ETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
E +P +V IG +P+ML+S ++ +L +GE D GGYFIIN
Sbjct: 101 ----ENNIEGDPTEVHIGDIPIMLKSIADPTSEFSQDKLVEIGEDPKDPGGYFIIN 152
[224][TOP]
>UniRef100_Q1L5B2 DNA-directed RNA polymerase (Fragment) n=1 Tax=Eschscholzia
californica RepID=Q1L5B2_ESCCA
Length = 951
Score = 102 bits (254), Expect = 2e-20
Identities = 52/91 (57%), Positives = 64/91 (70%)
Frame = +1
Query: 271 EAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVDPETGEEEATSEEPEKVFIGRVPVMLR 450
E+ TL+P ARLRNLTYS PLY DVTK ++ EE A +++ KVFIGRVP+MLR
Sbjct: 1 ESATLFPKAARLRNLTYSAPLYVDVTKRIIK--KGHDCEEVAETQDFTKVFIGRVPIMLR 58
Query: 451 SRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
S +C L+ +E +L LGEC DQGGYFIIN
Sbjct: 59 SSYCTLYQNSEKDLTELGECPYDQGGYFIIN 89
[225][TOP]
>UniRef100_Q1L6E0 DNA-directed RNA polymerase (Fragment) n=1 Tax=Coriaria sarmentosa
RepID=Q1L6E0_9ROSI
Length = 952
Score = 102 bits (253), Expect = 2e-20
Identities = 51/91 (56%), Positives = 62/91 (68%)
Frame = +1
Query: 271 EAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVDPETGEEEATSEEPEKVFIGRVPVMLR 450
E TL+P ARLRNLTYS PLY DVTK ++ GEE +++ KVFIG+VP+MLR
Sbjct: 1 ETATLFPKAARLRNLTYSAPLYVDVTKRVIK--KGHDGEEVTETQDFTKVFIGKVPIMLR 58
Query: 451 SRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
S +C L +E +L LGEC DQGGYFIIN
Sbjct: 59 SSYCTLFQNSEKDLTELGECPYDQGGYFIIN 89
[226][TOP]
>UniRef100_Q1L5A9 RNA polymerase II second largest subunit (Fragment) n=1
Tax=Liquidambar acalycina RepID=Q1L5A9_9MAGN
Length = 453
Score = 102 bits (253), Expect = 2e-20
Identities = 51/91 (56%), Positives = 62/91 (68%)
Frame = +1
Query: 271 EAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVDPETGEEEATSEEPEKVFIGRVPVMLR 450
E TL+P ARLRNLTYS PLY DVTK ++ GEE +++ KVFIG+VP+MLR
Sbjct: 1 ETATLFPKAARLRNLTYSAPLYVDVTKRVIK--KGHDGEEVTETQDFTKVFIGKVPIMLR 58
Query: 451 SRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
S +C L +E +L LGEC DQGGYFIIN
Sbjct: 59 SSYCTLFQNSEKDLTELGECPYDQGGYFIIN 89
[227][TOP]
>UniRef100_Q07DU9 DNA-directed RNA polymerase (Fragment) n=1 Tax=Zea mays
RepID=Q07DU9_MAIZE
Length = 1170
Score = 101 bits (252), Expect = 3e-20
Identities = 61/180 (33%), Positives = 95/180 (52%), Gaps = 12/180 (6%)
Frame = +1
Query: 37 EVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAPDENTKVV 216
E ++FDE GL+ Q+ SYNEFVS +Q L D ++++ E Y P + +
Sbjct: 34 EASRSFFDEVGLISHQINSYNEFVSHGLQELFDSLGEVIV--EPGYDPSKKGSGGWKHAI 91
Query: 217 IKFGQLRVSKPNFTENNGEAGTLY-PNQARLRNLTYSTPLYCDVTKTTVRLVDPETGEEE 393
IKFG++++ KP F E + P ARL+N+TY++ L + + T+++ E ++
Sbjct: 92 IKFGRVKLEKPVFWTGKDEGSVDFKPWHARLQNMTYASRL---IVEVTIQVYSLEKSDKS 148
Query: 394 ATS-----------EEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFII 540
T E +FIG +PVM++S CLLH+LNE EC D GGYF++
Sbjct: 149 KTGNDGFVQKRNFMNETHWIFIGLLPVMVKSNLCLLHSLNE------SECLFDAGGYFLV 202
[228][TOP]
>UniRef100_Q1DPF0 DNA-directed RNA polymerase n=1 Tax=Coccidioides immitis
RepID=Q1DPF0_COCIM
Length = 1152
Score = 101 bits (252), Expect = 3e-20
Identities = 57/173 (32%), Positives = 86/173 (49%), Gaps = 31/173 (17%)
Frame = +1
Query: 118 MQRLVDESPDIVLIPEDQYVPGRDAPDENT--KVVIKFGQLRVSKPNFTENNGEAGTLYP 291
MQ LV+E + L + P D PD + +KFG + +++P+ TE +G + P
Sbjct: 1 MQELVEEQGQVTL--DQTIAPDEDDPDPVMVRRYELKFGTVMLARPSMTEGDGATSIMLP 58
Query: 292 NQARLRNLTYSTPLYCDVTKTTVRLVDPETGEEEATSEEP-------------------- 411
+ARLRNLTY++PLY +TK + E + +EP
Sbjct: 59 QEARLRNLTYASPLYLGITKKIAEGRERSLAERDEDDDEPDAKGDEERRARGTYLQWEPK 118
Query: 412 ---------EKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
E +FIG++P+ML+S++C+L +L E L + EC D GGYFIIN
Sbjct: 119 ALPEDEADEENIFIGKMPIMLKSKYCILKDLGEHALYNWNECPYDSGGYFIIN 171
[229][TOP]
>UniRef100_Q1L6D7 DNA-directed RNA polymerase (Fragment) n=1 Tax=Dicentra formosa
RepID=Q1L6D7_9MAGN
Length = 873
Score = 101 bits (251), Expect = 4e-20
Identities = 51/91 (56%), Positives = 63/91 (69%)
Frame = +1
Query: 271 EAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVDPETGEEEATSEEPEKVFIGRVPVMLR 450
E TL+P ARLRNLTYS PLY DVTK ++ EE ++E +KVFIG+VP+MLR
Sbjct: 1 ETATLFPKAARLRNLTYSAPLYVDVTKRIIK--KGHDCEEVTETQEFKKVFIGKVPIMLR 58
Query: 451 SRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
S +C L+ +E +L LGEC DQGGYFIIN
Sbjct: 59 SSYCTLYQNSEKDLTELGECPYDQGGYFIIN 89
[230][TOP]
>UniRef100_Q9UV93 DNA-directed RNA polymerase (Fragment) n=1 Tax=Trichophyton rubrum
RepID=Q9UV93_TRIRU
Length = 1109
Score = 101 bits (251), Expect = 4e-20
Identities = 63/175 (36%), Positives = 91/175 (52%), Gaps = 34/175 (19%)
Frame = +1
Query: 121 QRLVDESPDIVLIPEDQYVPGRDAPDENTKVVI-----KFGQLRVSKPNFTENNGEAGTL 285
Q LV+E + L DQ VP D DE VV+ KFG + +++P+ TE +G +
Sbjct: 1 QELVEEQGQVTL---DQTVPPSD--DEPDPVVLRRYELKFGTVMLARPSMTEGDGATSIM 55
Query: 286 YPNQARLRNLTYSTPLYCDVTKTTV----RLVDPETGEEEATSE---------------- 405
P +ARLRNLTY++PLY ++K + RL+ EEE E
Sbjct: 56 LPQEARLRNLTYASPLYLGISKKIMEGRERLLSERDEEEEEIEEKGDEERRNRGTYLHWE 115
Query: 406 ---------EPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
E E +FIG++P+ML+S++C+L +L E L + EC D GGYF+IN
Sbjct: 116 RKPTMEDEAEEENIFIGKMPIMLKSKYCILKDLGEQALYNWNECPYDSGGYFVIN 170
[231][TOP]
>UniRef100_Q1L6D2 DNA-directed RNA polymerase (Fragment) n=1 Tax=Euptelea polyandra
RepID=Q1L6D2_9MAGN
Length = 874
Score = 100 bits (249), Expect = 7e-20
Identities = 51/91 (56%), Positives = 62/91 (68%)
Frame = +1
Query: 271 EAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVDPETGEEEATSEEPEKVFIGRVPVMLR 450
E TL+P ARLRNLTYS PLY DVTK ++ EE ++E KVFIG+VP+MLR
Sbjct: 1 ETATLFPKAARLRNLTYSAPLYVDVTKRIIK--KGHDCEEVTETQEFTKVFIGKVPIMLR 58
Query: 451 SRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
S +C L+ +E +L LGEC DQGGYFIIN
Sbjct: 59 SSYCTLYQNSEKDLTELGECPYDQGGYFIIN 89
[232][TOP]
>UniRef100_Q1L5B6 RNA polymerase II second largest subunit (Fragment) n=1
Tax=Camellia japonica RepID=Q1L5B6_9ERIC
Length = 431
Score = 100 bits (249), Expect = 7e-20
Identities = 51/91 (56%), Positives = 63/91 (69%)
Frame = +1
Query: 271 EAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVDPETGEEEATSEEPEKVFIGRVPVMLR 450
E +L+P ARLRNLTYS+PLY DVTK V+ EE ++E KVFIG+VP+MLR
Sbjct: 1 ETASLFPKAARLRNLTYSSPLYVDVTKRVVKR--GHDCEEVTETQEFTKVFIGKVPIMLR 58
Query: 451 SRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
S +C L+ +E +L LGEC DQGGYFIIN
Sbjct: 59 SSYCCLYQTSEKDLTELGECPFDQGGYFIIN 89
[233][TOP]
>UniRef100_Q1L5B3 DNA-directed RNA polymerase (Fragment) n=1 Tax=Astilbe sp.
Yoshikawa s.n. RepID=Q1L5B3_9MAGN
Length = 951
Score = 100 bits (249), Expect = 7e-20
Identities = 50/91 (54%), Positives = 62/91 (68%)
Frame = +1
Query: 271 EAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVDPETGEEEATSEEPEKVFIGRVPVMLR 450
E TL+P ARLRNLTYS PLY DV+K ++ GEE +++ KVFIG+VP+MLR
Sbjct: 1 ETATLFPKAARLRNLTYSAPLYVDVSKRVIK--KGHDGEEVTETQDFTKVFIGKVPIMLR 58
Query: 451 SRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
S +C L +E +L LGEC DQGGYFIIN
Sbjct: 59 SSYCTLFQNSEKDLTELGECPYDQGGYFIIN 89
[234][TOP]
>UniRef100_B8MJE1 DNA-directed RNA polymerase n=1 Tax=Talaromyces stipitatus ATCC
10500 RepID=B8MJE1_TALSN
Length = 1212
Score = 100 bits (249), Expect = 7e-20
Identities = 58/179 (32%), Positives = 95/179 (53%), Gaps = 4/179 (2%)
Frame = +1
Query: 19 SAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAPD 198
+A D W ++ A+ GLV+Q + SYN F+ V ++++V+ S I D
Sbjct: 87 TARDKWNLLPAFLKVKGLVKQHIDSYNYFIEVQLKKIVEASSTIY-------------SD 133
Query: 199 ENTKVVIKFGQLRVSKPNFTENNGEA----GTLYPNQARLRNLTYSTPLYCDVTKTTVRL 366
++ +KF + V P ++ ++ T+ PN+ RLR++TY+ P++ D T
Sbjct: 134 ADSHFFLKFTDIYVGSPRRSDEPKDSVESDSTVTPNECRLRDMTYAAPIFVDFTY----- 188
Query: 367 VDPETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
+ G++ T +V IGR+P+MLRS C+L N EL+ L EC +D GGYFI+N
Sbjct: 189 ---KRGKDNVTQR---RVPIGRMPIMLRSSKCVLSNKKPNELHLLNECPLDPGGYFIVN 241
[235][TOP]
>UniRef100_Q1L5A8 RNA polymerase II second largest subunit (Fragment) n=1
Tax=Nymphaea colorata RepID=Q1L5A8_9MAGN
Length = 431
Score = 100 bits (248), Expect = 9e-20
Identities = 50/91 (54%), Positives = 61/91 (67%)
Frame = +1
Query: 271 EAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVDPETGEEEATSEEPEKVFIGRVPVMLR 450
E TL+P ARLRNLTYS PLY DVTK ++ EE ++ KVFIG+VP+MLR
Sbjct: 1 ETATLFPKAARLRNLTYSAPLYVDVTKRVIK--KGHDSEELVEKQDFTKVFIGKVPIMLR 58
Query: 451 SRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
S +C L+ +E +L LGEC DQGGYFIIN
Sbjct: 59 SSYCTLYQNSEKDLTELGECPYDQGGYFIIN 89
[236][TOP]
>UniRef100_C5Y8Y9 DNA-directed RNA polymerase n=1 Tax=Sorghum bicolor
RepID=C5Y8Y9_SORBI
Length = 1239
Score = 100 bits (248), Expect = 9e-20
Identities = 63/177 (35%), Positives = 93/177 (52%), Gaps = 9/177 (5%)
Frame = +1
Query: 37 EVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAPDENTKVV 216
E ++FDE GL+ Q+ SYNEFVS +Q L D ++++ E Y P + +
Sbjct: 103 EASRSFFDEVGLISHQINSYNEFVSHGLQELFDSLGEVIV--EPGYDPSKKGSGGWKHAI 160
Query: 217 IKFGQLRVSKPNFTENNGEAGTLY-PNQARLRNLTYSTPLYCDVTKTTVRLVDPE---TG 384
IKFG++++ KP F E + P ARL+N+TY++ L +VT L + TG
Sbjct: 161 IKFGRVKLEKPVFWTGKDEGSVDFKPWHARLQNMTYASRLKVEVTIQVYSLEKSDKSKTG 220
Query: 385 EEEATSE-----EPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFII 540
E + E +FIG +PVM++S CLLH+L E EC D GGYF++
Sbjct: 221 NEGFVQKRNFMNETHWIFIGLLPVMVKSNLCLLHSLKE------SECLFDAGGYFLV 271
[237][TOP]
>UniRef100_B6QHR9 DNA-directed RNA polymerase n=1 Tax=Penicillium marneffei ATCC
18224 RepID=B6QHR9_PENMQ
Length = 1212
Score = 100 bits (248), Expect = 9e-20
Identities = 57/179 (31%), Positives = 96/179 (53%), Gaps = 4/179 (2%)
Frame = +1
Query: 19 SAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAPD 198
+A D W ++ A+ GLV+Q + SYN F+ V ++++V+ S I D
Sbjct: 87 TARDKWNLLPAFLKVKGLVKQHIDSYNYFIEVQLKKIVEASSTIY-------------SD 133
Query: 199 ENTKVVIKFGQLRVSKPNFTENNGEA----GTLYPNQARLRNLTYSTPLYCDVTKTTVRL 366
++ +KF + V P ++ ++ T+ PN+ RLR++TY+ P++ D T
Sbjct: 134 ADSAFFLKFTDIYVGSPRRSDEPKDSVESDSTVTPNECRLRDMTYAAPIFVDFTY----- 188
Query: 367 VDPETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
+ G+++ T +V IGR+P+MLRS C+L N E++ L EC +D GGYFI+N
Sbjct: 189 ---KRGKDKVTQR---RVPIGRMPIMLRSSKCVLSNKKPNEMHLLNECPLDPGGYFIVN 241
[238][TOP]
>UniRef100_Q1L6E5 DNA-directed RNA polymerase (Fragment) n=1 Tax=Callistemon
subulatus RepID=Q1L6E5_9MYRT
Length = 952
Score = 99.8 bits (247), Expect = 1e-19
Identities = 49/91 (53%), Positives = 62/91 (68%)
Frame = +1
Query: 271 EAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVDPETGEEEATSEEPEKVFIGRVPVMLR 450
E TL+P ARLRNLTYS PLY DV+ ++ GEE ++ +KVFIG+VP+MLR
Sbjct: 1 ETATLFPKAARLRNLTYSAPLYVDVSMRVIK--KGHDGEELTEPQDLQKVFIGKVPIMLR 58
Query: 451 SRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
S +C L+ +E +L LGEC DQGGYFIIN
Sbjct: 59 SSYCTLYQNSEKDLTELGECPYDQGGYFIIN 89
[239][TOP]
>UniRef100_B4FHF6 Putative uncharacterized protein n=1 Tax=Zea mays
RepID=B4FHF6_MAIZE
Length = 267
Score = 99.8 bits (247), Expect = 1e-19
Identities = 61/180 (33%), Positives = 94/180 (52%), Gaps = 12/180 (6%)
Frame = +1
Query: 37 EVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAPDENTKVV 216
E ++FDE GL+ Q+ SYNEFVS +Q L D ++++ E Y P + +
Sbjct: 93 EASRSFFDEVGLISHQINSYNEFVSHGLQELFDSLGEVIV--EPGYDPSKKGSGSWKHAI 150
Query: 217 IKFGQLRVSKPNFTENNGEAGTLY-PNQARLRNLTYSTPLYCDVTKTTVRLVDPETGEEE 393
IKFG++++ KP F E + P ARL+N+TY++ L +V T+++ E ++
Sbjct: 151 IKFGRVKLEKPVFWTGKDEVSVDFKPWHARLQNMTYASRLRVEV---TIQVYSLEKSDKS 207
Query: 394 ATS-----------EEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFII 540
T E +FIG +PVM++S CLLH+L E EC D GGYF++
Sbjct: 208 KTGNDGFVQKRNFMNETHWIFIGLLPVMVKSNLCLLHSLKE------SECLFDAGGYFLV 261
[240][TOP]
>UniRef100_Q6CEE6 DNA-directed RNA polymerase n=1 Tax=Yarrowia lipolytica
RepID=Q6CEE6_YARLI
Length = 1169
Score = 99.8 bits (247), Expect = 1e-19
Identities = 53/176 (30%), Positives = 96/176 (54%), Gaps = 1/176 (0%)
Frame = +1
Query: 19 SAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAPD 198
+AED W ++ A+ GLV+Q L S+N FV V +++++ + ++ D
Sbjct: 44 TAEDKWNLLPAFLKVKGLVKQHLDSFNYFVDVDLKKILAANQMVL-------------SD 90
Query: 199 ENTKVVIKFGQLRVSKPNFT-ENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVDP 375
+ + +K+ +RV KP ++ + ++P++ RLR++TY+ P+Y D+ T R +
Sbjct: 91 VDPEFYLKYKDIRVGKPGIKFDDKNDDNAIFPHECRLRDMTYAAPIYVDIEYTKERKIVI 150
Query: 376 ETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
+ E IG++P+MLRS C L + E ++ ++GEC +D GGYFI+N
Sbjct: 151 QRNLE-----------IGKMPIMLRSSKCHLQDQTEEKMAAMGECPLDPGGYFIVN 195
[241][TOP]
>UniRef100_Q5KC33 DNA-directed RNA polymerase n=1 Tax=Filobasidiella neoformans
RepID=Q5KC33_CRYNE
Length = 1129
Score = 99.8 bits (247), Expect = 1e-19
Identities = 60/174 (34%), Positives = 91/174 (52%)
Frame = +1
Query: 19 SAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAPD 198
+ ED W+++ A+ GLV+Q L S+N FV+V ++ ++ + ++ D
Sbjct: 20 TVEDKWQLLPAFLKVKGLVKQHLDSFNYFVNVDIKAILAANSLVI-------------SD 66
Query: 199 ENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVDPE 378
N K I++ +RV +P + N A L P + RL + TYS P+Y DV
Sbjct: 67 INPKYYIRYTDIRVGRPARHDANQVASALSPMECRLTDSTYSAPIYVDVEYM-------- 118
Query: 379 TGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFII 540
GEE+ + + V IG +PVMLRS C L NE EL +GEC +D GGYF++
Sbjct: 119 -GEEKRSKQRG--VQIGMLPVMLRSDLCNLKGKNEAELARMGECPMDPGGYFVV 169
[242][TOP]
>UniRef100_Q1L6E4 DNA-directed RNA polymerase (Fragment) n=1 Tax=Chimonanthus praecox
RepID=Q1L6E4_9MAGN
Length = 906
Score = 99.4 bits (246), Expect = 2e-19
Identities = 50/91 (54%), Positives = 62/91 (68%)
Frame = +1
Query: 271 EAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVDPETGEEEATSEEPEKVFIGRVPVMLR 450
E TL+P ARLRNLTYS PLY DVTK ++ EE ++E KVFIG+VP+MLR
Sbjct: 1 ETATLFPKAARLRNLTYSAPLYVDVTKRIIK--KGHDCEEVTETQEFTKVFIGKVPIMLR 58
Query: 451 SRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
S +C ++ +E +L LGEC DQGGYFIIN
Sbjct: 59 SSYCTVYQNSEKDLTELGECPYDQGGYFIIN 89
[243][TOP]
>UniRef100_Q1L6D6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Dillenia
suffruticosa RepID=Q1L6D6_9MAGN
Length = 868
Score = 99.4 bits (246), Expect = 2e-19
Identities = 50/91 (54%), Positives = 62/91 (68%)
Frame = +1
Query: 271 EAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVDPETGEEEATSEEPEKVFIGRVPVMLR 450
E TL+P ARLRNLTYS PLY DVTK ++ EE +++ KVFIG+VP+MLR
Sbjct: 1 ETATLFPKAARLRNLTYSAPLYVDVTKRIIK--KGHDCEEVTETQDFAKVFIGKVPIMLR 58
Query: 451 SRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
S +C L+ +E +L LGEC DQGGYFIIN
Sbjct: 59 SSYCTLYQNSEKDLTELGECPYDQGGYFIIN 89
[244][TOP]
>UniRef100_Q1L6C9 RNA polymerase II second largest subunit (Fragment) n=1 Tax=Gunnera
chilensis RepID=Q1L6C9_GUNCH
Length = 453
Score = 99.4 bits (246), Expect = 2e-19
Identities = 49/91 (53%), Positives = 62/91 (68%)
Frame = +1
Query: 271 EAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVDPETGEEEATSEEPEKVFIGRVPVMLR 450
E TL+P ARLRNLTYS PLY DVTK ++ EE +++ KVFIG+VP+ML+
Sbjct: 1 ETATLFPKAARLRNLTYSAPLYVDVTKRVIKR--GHDCEELTETQDFTKVFIGKVPIMLK 58
Query: 451 SRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
S +C +H E +L LGEC +DQGGYFIIN
Sbjct: 59 SSYCTVHQNTEKDLTELGECPLDQGGYFIIN 89
[245][TOP]
>UniRef100_Q1L6A5 DNA-directed RNA polymerase (Fragment) n=1 Tax=Tetracentron sinense
RepID=Q1L6A5_9MAGN
Length = 951
Score = 99.4 bits (246), Expect = 2e-19
Identities = 50/91 (54%), Positives = 62/91 (68%)
Frame = +1
Query: 271 EAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVDPETGEEEATSEEPEKVFIGRVPVMLR 450
E TL+P ARLRNLTYS PLY DVTK ++ EE ++E KVFIG+VP+MLR
Sbjct: 1 ETATLFPKAARLRNLTYSAPLYVDVTKRIIK--KGHDCEEVTETQEFTKVFIGKVPIMLR 58
Query: 451 SRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
S +C ++ +E +L LGEC DQGGYFIIN
Sbjct: 59 SSYCTVYQNSEKDLTELGECPYDQGGYFIIN 89
[246][TOP]
>UniRef100_Q976A4 DNA-directed RNA polymerase n=1 Tax=Sulfolobus tokodaii
RepID=Q976A4_SULTO
Length = 1126
Score = 99.4 bits (246), Expect = 2e-19
Identities = 60/177 (33%), Positives = 93/177 (52%), Gaps = 1/177 (0%)
Frame = +1
Query: 16 ISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAP 195
++ + WE++ ++F GLVRQ L S+N+F+ +Q+++DE +I+ +PG
Sbjct: 3 LTVNERWEIVKSFFKLRGLVRQHLDSFNDFLRNKLQQIIDEQGEII-----TEIPG---- 53
Query: 196 DENTKVVIKFGQLRVSKPNFTE-NNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVD 372
+ IK G++R +P E + G L P +ARLRNLTY+ PLY +
Sbjct: 54 -----LKIKLGKIRYDRPGIRETDKGPPKELTPLEARLRNLTYAVPLYLTMIPI------ 102
Query: 373 PETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
E EP +V+IG +P+ML+S N+ EL +GE D GGYFI+N
Sbjct: 103 -----ENNIEGEPIEVYIGDLPIMLKSIADPTSNMTYDELIKIGEDPKDPGGYFIVN 154
[247][TOP]
>UniRef100_C5M3E6 DNA-directed RNA polymerase n=1 Tax=Candida tropicalis MYA-3404
RepID=C5M3E6_CANTT
Length = 1159
Score = 99.0 bits (245), Expect = 2e-19
Identities = 58/175 (33%), Positives = 94/175 (53%)
Frame = +1
Query: 19 SAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAPD 198
+AED W ++ A+ GLV+Q L SYN FV V +++++ ++ ++VL D
Sbjct: 38 TAEDKWNLLPAFLKVKGLVKQHLDSYNYFVDVDLKKII-KANELVL------------SD 84
Query: 199 ENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVDPE 378
+ + +K+ +RV + + + L P++ RLR+LTYS P+Y DV T R +
Sbjct: 85 VDPEFYVKYLDIRVGHKSTAKPGVKEVILPPHECRLRDLTYSAPIYVDVEYTRGRKIIRH 144
Query: 379 TGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
E IGR+PVMLRS C+L ++E + + EC +D GGYF++N
Sbjct: 145 NDLE-----------IGRMPVMLRSNKCMLEGMSEASMAQVEECPLDPGGYFVVN 188
[248][TOP]
>UniRef100_Q1L6F0 DNA-directed RNA polymerase (Fragment) n=1 Tax=Aextoxicon punctatum
RepID=Q1L6F0_9MAGN
Length = 873
Score = 98.6 bits (244), Expect = 3e-19
Identities = 49/91 (53%), Positives = 62/91 (68%)
Frame = +1
Query: 271 EAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVDPETGEEEATSEEPEKVFIGRVPVMLR 450
E TL+P ARLRNLTYS PLY DVTK ++ EE +++ KVFIG+VP+MLR
Sbjct: 1 ETATLFPKAARLRNLTYSAPLYVDVTKRVIK--KGHDCEEVTETQDFTKVFIGKVPIMLR 58
Query: 451 SRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
S +C ++ +E +L LGEC DQGGYFIIN
Sbjct: 59 SSYCTVYQNSEKDLTELGECPFDQGGYFIIN 89
[249][TOP]
>UniRef100_Q1L6E1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Cissus tuberosa
RepID=Q1L6E1_9MAGN
Length = 951
Score = 98.6 bits (244), Expect = 3e-19
Identities = 50/91 (54%), Positives = 63/91 (69%)
Frame = +1
Query: 271 EAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVDPETGEEEATSEEPEKVFIGRVPVMLR 450
E TL+P ARLRNLTYS PLY +VTK +R EE ++E KVFIG+VP+MLR
Sbjct: 1 ETATLFPKAARLRNLTYSAPLYVNVTKRIIR--KGHDLEEVTETQEFTKVFIGKVPIMLR 58
Query: 451 SRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
S +C +++ +E +L LGEC DQGGYFIIN
Sbjct: 59 SSYCTVYHNSEKDLTELGECPYDQGGYFIIN 89
[250][TOP]
>UniRef100_Q1L6D4 RNA polymerase II second largest subunit (Fragment) n=1
Tax=Embothrium coccineum RepID=Q1L6D4_EMBCO
Length = 706
Score = 98.6 bits (244), Expect = 3e-19
Identities = 49/91 (53%), Positives = 62/91 (68%)
Frame = +1
Query: 271 EAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVDPETGEEEATSEEPEKVFIGRVPVMLR 450
E TL+P ARLRNLTYS PLY DVTK ++ EE +++ KVFIG+VP+MLR
Sbjct: 1 ETATLFPKAARLRNLTYSAPLYVDVTKRVIK--KGHDCEEVTETQDFAKVFIGKVPIMLR 58
Query: 451 SRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
S +C ++ +E +L LGEC DQGGYFIIN
Sbjct: 59 SSYCTVYQNSEKDLTELGECPFDQGGYFIIN 89