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[1][TOP]
>UniRef100_O04142 DNA-directed RNA polymerase (Fragment) n=1 Tax=Porphyra yezoensis
RepID=O04142_PORYE
Length = 1685
Score = 251 bits (641), Expect = 2e-65
Identities = 143/186 (76%), Positives = 148/186 (79%), Gaps = 6/186 (3%)
Frame = +3
Query: 3 YHLTEPDLHLQESSNSPYLSQAALNDIHSG----GDVTELL--AKEWAQLKKDRDFLRHE 164
YHLTEPDLHLQ L G G V++ + A+E +L R F
Sbjct: 827 YHLTEPDLHLQGVVQFSVLVAGGSQRYPLGRRRRGAVSQGVGTAEEGPRLPTPRGF---- 882
Query: 165 VFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDED 344
KTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVR VELLLHRTRVLTSDED
Sbjct: 883 --KTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDED 940
Query: 345 AEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLT 524
AEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLT
Sbjct: 941 AEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLT 1000
Query: 525 RKAFTW 542
RKAFTW
Sbjct: 1001 RKAFTW 1006
[2][TOP]
>UniRef100_Q9AXN0 DNA-directed RNA polymerase n=1 Tax=Glaucosphaera vacuolata
RepID=Q9AXN0_9RHOD
Length = 1746
Score = 125 bits (314), Expect = 2e-27
Identities = 74/192 (38%), Positives = 111/192 (57%), Gaps = 14/192 (7%)
Frame = +3
Query: 3 YHLTEPDLHLQESSNS-PYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTG 179
+HL DL N YL+Q ++D+ + + + L E+AQ+K DRD L+ E+ ++
Sbjct: 885 FHLDPFDLDFGIGENRRSYLAQEVIDDVRNDPQLIKALEDEFAQIKLDRDRLQREIIRSR 944
Query: 180 EAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLT--------- 332
E+K PLAVNI+RLIWN K +F++RQ+ SDL+P I++ V++LL R V+
Sbjct: 945 ESKWPLAVNIDRLIWNVKTLFNIRQDSVSDLNPRDILKGVQILLSRCNVVALPPKSIKLL 1004
Query: 333 ----SDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKV 500
D+ AEVD + ++L+ AQ NATLL+ +H+RA LASKV
Sbjct: 1005 DEGDGDQVAEVDT----------------NSVSRQLAVEAQENATLLWSIHIRAFLASKV 1048
Query: 501 VLSEHRLTRKAF 536
+L E+RL +KAF
Sbjct: 1049 ILKEYRLDKKAF 1060
[3][TOP]
>UniRef100_O09451 DNA-directed RNA polymerase (Fragment) n=1 Tax=Bonnemaisonia hamifera
RepID=O09451_9FLOR
Length = 1732
Score = 124 bits (312), Expect = 3e-27
Identities = 68/173 (39%), Positives = 101/173 (58%), Gaps = 3/173 (1%)
Frame = +3
Query: 33 QESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIE 212
Q+ PYL + + + L E+ Q++ DR LR + KTGE+K PLAVN++
Sbjct: 820 QDEKGRPYLDPNIVERVRQDAALHVELRLEFQQIEADRKLLRDYIIKTGESKRPLAVNVD 879
Query: 213 RLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGS 392
R+IWNAK+ ++ + SDL P ++++ V +LL RTRVL ++A ++ A E +
Sbjct: 880 RVIWNAKQEHNIHADSVSDLKPDQVLKGVSMLLKRTRVLVLGDEAALENAALEPGMEEDD 939
Query: 393 ASGPQDE---ALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
P DE + L + AQ NATLLFQ+H+R+ LA K ++ HRLT KAF W
Sbjct: 940 EGNPIDEKPTMVDPLMKEAQENATLLFQIHMRSMLACKKLIQLHRLTFKAFLW 992
[4][TOP]
>UniRef100_Q9AXN1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Botryocladia
uvarioides RepID=Q9AXN1_9FLOR
Length = 1712
Score = 119 bits (299), Expect = 1e-25
Identities = 66/181 (36%), Positives = 106/181 (58%), Gaps = 1/181 (0%)
Frame = +3
Query: 3 YHLTEPDLHL-QESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTG 179
Y+L D ++S PYL + I LL E+ ++++DRD LR+ + K+G
Sbjct: 810 YYLDPTDAKFGKDSRGRPYLDWETCDSIRQDAQAHILLRNEFQRIREDRDLLRNFIAKSG 869
Query: 180 EAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDA 359
EAK P+AVNI+R+IWNAK+ ++R + SDL+P ++ + +++LL RTRV+ +D + +
Sbjct: 870 EAKRPMAVNIDRIIWNAKQAHNIRPDSVSDLTPVQVWKGIKMLLKRTRVVEIGDDQDDED 929
Query: 360 IAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFT 539
+ + +G + A L+ Q NAT++FQ+HVR+ LA K V+ HRL AF
Sbjct: 930 VDDGVTDENGEMIDRKPVA-DPLTLETQENATMIFQIHVRSMLACKQVMVRHRLDINAFL 988
Query: 540 W 542
W
Sbjct: 989 W 989
[5][TOP]
>UniRef100_B4YT42 DNA-directed RNA polymerase (Fragment) n=1 Tax=Amphizoa lecontei
RepID=B4YT42_AMPLE
Length = 562
Score = 102 bits (254), Expect = 2e-20
Identities = 61/173 (35%), Positives = 91/173 (52%), Gaps = 4/173 (2%)
Frame = +3
Query: 36 ESSNSPYL----SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 203
+ SN YL ++ L + GDV L +EW QL KDR+ LR ++F TGE+K+ L
Sbjct: 385 DPSNERYLRRIFNEEILRQLMGSGDVISELEREWDQLSKDREALR-QIFPTGESKVVLPC 443
Query: 204 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPP 383
N++R+IWN ++IF + + +DLSP ++++ V LL + ++ D+
Sbjct: 444 NLQRMIWNVQKIFHINKRATTDLSPLRVIQGVRQLLQKCIIVAGDD-------------- 489
Query: 384 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
LS A NATLLFQ VRA+L +K V E RL+ +AF W
Sbjct: 490 -------------RLSRQANENATLLFQCLVRATLCTKCVSEEFRLSTEAFEW 529
[6][TOP]
>UniRef100_B4YT35 DNA-directed RNA polymerase (Fragment) n=1 Tax=Tenomerga cinerea
RepID=B4YT35_9COLE
Length = 553
Score = 102 bits (253), Expect = 2e-20
Identities = 61/173 (35%), Positives = 91/173 (52%), Gaps = 4/173 (2%)
Frame = +3
Query: 36 ESSNSPYL----SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 203
+ SN YL ++ L + GDV L +EW QL KDR+ LR ++F TGE+K+ L
Sbjct: 385 DPSNERYLRRIFNEEILRQLMGSGDVISELEREWDQLTKDREALR-QIFPTGESKVVLPC 443
Query: 204 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPP 383
N++R+IWN ++IF + + +DLSP ++++ V LL + ++ D+
Sbjct: 444 NLQRMIWNVQKIFHINKRATTDLSPLRVIQGVRQLLQKCIIVAGDD-------------- 489
Query: 384 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
LS A NATLLFQ VRA+L +K V E RL+ +AF W
Sbjct: 490 -------------RLSRQANENATLLFQCLVRATLCTKCVSEEFRLSTEAFEW 529
[7][TOP]
>UniRef100_UPI00019270E9 PREDICTED: similar to DNA-directed RNA polymerase II subunit RPB1
isoform 2 n=1 Tax=Hydra magnipapillata
RepID=UPI00019270E9
Length = 2014
Score = 101 bits (251), Expect = 4e-20
Identities = 57/162 (35%), Positives = 91/162 (56%)
Frame = +3
Query: 57 LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 236
L++ L +I+S T + +E+ QLK DR+ LR+ +F G K+ L V + RLIWN+++
Sbjct: 934 LNEDVLRNIYSDSTTTNAIEEEFRQLKDDREMLRN-IFPNGNKKVNLPVKLSRLIWNSQK 992
Query: 237 IFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEA 416
+F V ++DLSP K++ ++ L R V+ ++
Sbjct: 993 MFKVNLRAQTDLSPLKVINDIKDLTKRLLVVKGED------------------------- 1027
Query: 417 LKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
+LS+ AQLNAT+LFQ+H+R++L SK V+ E RLT +AF W
Sbjct: 1028 --KLSKEAQLNATMLFQIHLRSTLCSKRVIEEFRLTSEAFDW 1067
[8][TOP]
>UniRef100_UPI00019270BB PREDICTED: similar to DNA-directed RNA polymerase II subunit RPB1
isoform 1 n=1 Tax=Hydra magnipapillata
RepID=UPI00019270BB
Length = 2041
Score = 101 bits (251), Expect = 4e-20
Identities = 57/162 (35%), Positives = 91/162 (56%)
Frame = +3
Query: 57 LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 236
L++ L +I+S T + +E+ QLK DR+ LR+ +F G K+ L V + RLIWN+++
Sbjct: 935 LNEDVLRNIYSDSTTTNAIEEEFRQLKDDREMLRN-IFPNGNKKVNLPVKLSRLIWNSQK 993
Query: 237 IFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEA 416
+F V ++DLSP K++ ++ L R V+ ++
Sbjct: 994 MFKVNLRAQTDLSPLKVINDIKDLTKRLLVVKGED------------------------- 1028
Query: 417 LKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
+LS+ AQLNAT+LFQ+H+R++L SK V+ E RLT +AF W
Sbjct: 1029 --KLSKEAQLNATMLFQIHLRSTLCSKRVIEEFRLTSEAFDW 1068
[9][TOP]
>UniRef100_O02475 DNA-directed RNA polymerase (Fragment) n=1 Tax=Triops longicaudatus
RepID=O02475_9CRUS
Length = 543
Score = 100 bits (250), Expect = 5e-20
Identities = 61/173 (35%), Positives = 94/173 (54%), Gaps = 4/173 (2%)
Frame = +3
Query: 36 ESSNSPYL----SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 203
+ SN YL S+ D+ + G+V L EW QL +DRD LR ++F TGE K+ L
Sbjct: 383 DPSNERYLRRIFSEDVTRDLMTSGEVISELDAEWEQLSRDRDALR-QIFPTGENKVVLPC 441
Query: 204 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPP 383
N++R+IWN ++IF + + +DLSP ++V+ V LL + V+ ++
Sbjct: 442 NLQRMIWNVQKIFHINKRAPTDLSPVRVVQGVRDLLEKCVVVKGED-------------- 487
Query: 384 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
+LS+ A +NATLLFQ VR++L +K V E+RL+ +AF W
Sbjct: 488 -------------KLSKQANMNATLLFQCLVRSTLCTKRVAEEYRLSSEAFEW 527
[10][TOP]
>UniRef100_UPI0000D5670C PREDICTED: similar to GA13798-PA n=1 Tax=Tribolium castaneum
RepID=UPI0000D5670C
Length = 2007
Score = 98.6 bits (244), Expect = 3e-19
Identities = 60/173 (34%), Positives = 95/173 (54%), Gaps = 4/173 (2%)
Frame = +3
Query: 36 ESSNSPYL----SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 203
+ SN YL ++ + D+ G+V L EW QL+KDR+ LR ++F +GE+K+ L
Sbjct: 919 DPSNERYLRRVFTEEVIKDLMGSGEVISELETEWEQLQKDREALR-QIFPSGESKVVLPC 977
Query: 204 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPP 383
N++R+IWN ++IF + + +DLSP ++++ V LL++ V+ + ED
Sbjct: 978 NLQRMIWNVQKIFHINKRAPTDLSPLRVIQGVRELLNKC-VIVAGED------------- 1023
Query: 384 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
LS+ A NATLLFQ VR++L +K V E RL+ +AF W
Sbjct: 1024 -------------RLSKQANENATLLFQCLVRSTLCTKCVSEEFRLSTEAFEW 1063
[11][TOP]
>UniRef100_O02459 DNA-directed RNA polymerase (Fragment) n=1 Tax=Periplaneta
americana RepID=O02459_PERAM
Length = 468
Score = 98.6 bits (244), Expect = 3e-19
Identities = 59/173 (34%), Positives = 93/173 (53%), Gaps = 4/173 (2%)
Frame = +3
Query: 36 ESSNSPYL----SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 203
+ +N YL ++ L ++ GDV L KEW QL KDR+ LR ++F +GE+K+ L
Sbjct: 308 DPTNERYLRRIFNEDILKELMGSGDVISELEKEWEQLVKDREALR-QIFPSGESKVVLPC 366
Query: 204 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPP 383
N++R+IWN ++IF + + +DLSP ++++ V LL + ++ D+
Sbjct: 367 NLQRMIWNVQKIFHINKRAPTDLSPLRVIQGVSDLLKKCIIVAGDD-------------- 412
Query: 384 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
LS+ A NATLLFQ VR++L +K V E RL+ +AF W
Sbjct: 413 -------------HLSKQANENATLLFQCLVRSTLCTKCVSEEFRLSSEAFEW 452
[12][TOP]
>UniRef100_Q84KP6 DNA-directed RNA polymerase n=1 Tax=Cyanidioschyzon merolae
RepID=Q84KP6_CYAME
Length = 1819
Score = 98.2 bits (243), Expect = 3e-19
Identities = 63/163 (38%), Positives = 85/163 (52%)
Frame = +3
Query: 54 YLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAK 233
Y+ ++ + + +V L +E+ QL DR+ L VF TGEAK PL VN++RLI N +
Sbjct: 924 YIEPDLIDAVRTDPEVALELEEEYQQLLADREQLC-AVFPTGEAKWPLMVNVQRLIQNCR 982
Query: 234 RIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDE 413
IF ++ + SDL P +I++ V +LL R V+ D+
Sbjct: 983 SIFGIQHDTLSDLHPRQIIQGVRVLLQRCVVVPGDD------------------------ 1018
Query: 414 ALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
ELS AQ NA LLF HVRA LA+K VL HRL KAF W
Sbjct: 1019 ---ELSREAQRNAVLLFAAHVRAELATKRVLQIHRLNSKAFAW 1058
[13][TOP]
>UniRef100_B4YT44 DNA-directed RNA polymerase (Fragment) n=1 Tax=Asaphidion yukonense
RepID=B4YT44_9CARA
Length = 562
Score = 98.2 bits (243), Expect = 3e-19
Identities = 60/173 (34%), Positives = 93/173 (53%), Gaps = 4/173 (2%)
Frame = +3
Query: 36 ESSNSPYL----SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 203
+ SN YL ++ + + GDV L +EW QL +DR+ LR ++F +GE+K+ L
Sbjct: 385 DPSNERYLRRIFNEEIIKQLMGSGDVISELEREWEQLSRDREALR-QIFPSGESKVVLPC 443
Query: 204 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPP 383
N++R+IWN ++IF + + +DLSP ++++ V LL + V+ + ED
Sbjct: 444 NLQRMIWNVQKIFHINKRSPTDLSPIRVIQGVRDLLQKC-VIVAGED------------- 489
Query: 384 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
LS+ A NATLLFQ VRA+L +K V E RL+ +AF W
Sbjct: 490 -------------RLSKLANENATLLFQCLVRATLCTKCVSEEFRLSTEAFEW 529
[14][TOP]
>UniRef100_UPI000179348F PREDICTED: similar to DNA-directed RNA polymerase II subunit RPB1
(RNA polymerase II subunit B1) (DNA-directed RNA
polymerase III largest subunit) n=1 Tax=Acyrthosiphon
pisum RepID=UPI000179348F
Length = 1862
Score = 97.8 bits (242), Expect = 4e-19
Identities = 59/161 (36%), Positives = 87/161 (54%)
Frame = +3
Query: 60 SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRI 239
++ L D+ D L KEW QL DRD LR E+F +GE+K+ L N++R+IWN ++I
Sbjct: 928 TEDVLKDMMGSNDTVAELEKEWEQLTNDRDTLR-EIFPSGESKVVLPCNLKRMIWNVQKI 986
Query: 240 FDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEAL 419
F + + +DL+P K+V V+ LL + V+ + ED
Sbjct: 987 FHINKRGPTDLNPIKVVNGVKKLLDKC-VIVAGED------------------------- 1020
Query: 420 KELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
ELS+ A NATLLFQ VR++L +K+V RL+ +AF W
Sbjct: 1021 -ELSKKANKNATLLFQCLVRSTLCTKLVSENFRLSSEAFEW 1060
[15][TOP]
>UniRef100_B4YT54 DNA-directed RNA polymerase (Fragment) n=2 Tax=Odontium subgenus
complex RepID=B4YT54_9CARA
Length = 473
Score = 97.8 bits (242), Expect = 4e-19
Identities = 62/173 (35%), Positives = 92/173 (53%), Gaps = 4/173 (2%)
Frame = +3
Query: 36 ESSNSPYLSQAALNDI----HSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 203
+ SN YL + DI GDV L +EW QL +DR+ LR ++F +GE+K+ L
Sbjct: 296 DPSNERYLRRIFNEDIIKQLMGSGDVISELEREWEQLSRDREALR-QIFPSGESKVVLPC 354
Query: 204 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPP 383
N++R+IWN ++IF + + +DLSP ++++ V LL + V+ + ED
Sbjct: 355 NLQRMIWNVQKIFHINKRSPTDLSPIRVIQGVRDLLQKC-VIVAGED------------- 400
Query: 384 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
LS+ A NATLLFQ VRA+L +K V E RL+ +AF W
Sbjct: 401 -------------RLSKQANENATLLFQCLVRATLCTKCVSEEFRLSTEAFEW 440
[16][TOP]
>UniRef100_B4YT49 DNA-directed RNA polymerase (Fragment) n=1 Tax=Bembidion
mandibulare RepID=B4YT49_9CARA
Length = 562
Score = 97.8 bits (242), Expect = 4e-19
Identities = 62/173 (35%), Positives = 92/173 (53%), Gaps = 4/173 (2%)
Frame = +3
Query: 36 ESSNSPYLSQAALNDI----HSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 203
+ SN YL + DI GDV L +EW QL +DR+ LR ++F +GE+K+ L
Sbjct: 385 DPSNERYLRRIFNEDIIKQLMGSGDVISELEREWEQLSRDREALR-QIFPSGESKVVLPC 443
Query: 204 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPP 383
N++R+IWN ++IF + + +DLSP ++++ V LL + V+ + ED
Sbjct: 444 NLQRMIWNVQKIFHINKRSPTDLSPIRVIQGVRDLLQKC-VIVAGED------------- 489
Query: 384 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
LS+ A NATLLFQ VRA+L +K V E RL+ +AF W
Sbjct: 490 -------------RLSKQANENATLLFQCLVRATLCTKCVSEEFRLSTEAFEW 529
[17][TOP]
>UniRef100_B4YT46 DNA-directed RNA polymerase (Fragment) n=3 Tax=Bembidion
RepID=B4YT46_9CARA
Length = 562
Score = 97.8 bits (242), Expect = 4e-19
Identities = 62/173 (35%), Positives = 92/173 (53%), Gaps = 4/173 (2%)
Frame = +3
Query: 36 ESSNSPYLSQAALNDI----HSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 203
+ SN YL + DI GDV L +EW QL +DR+ LR ++F +GE+K+ L
Sbjct: 385 DPSNERYLRRIFNEDIIKQLMGSGDVISELEREWEQLSRDREALR-QIFPSGESKVVLPC 443
Query: 204 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPP 383
N++R+IWN ++IF + + +DLSP ++++ V LL + V+ + ED
Sbjct: 444 NLQRMIWNVQKIFHINKRSPTDLSPIRVIQGVRDLLQKC-VIVAGED------------- 489
Query: 384 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
LS+ A NATLLFQ VRA+L +K V E RL+ +AF W
Sbjct: 490 -------------RLSKQANENATLLFQCLVRATLCTKCVSEEFRLSTEAFEW 529
[18][TOP]
>UniRef100_B4YT45 RNA polymerase II large subunit (Fragment) n=1 Tax=Sirdenus grayii
RepID=B4YT45_9CARA
Length = 227
Score = 97.8 bits (242), Expect = 4e-19
Identities = 62/173 (35%), Positives = 92/173 (53%), Gaps = 4/173 (2%)
Frame = +3
Query: 36 ESSNSPYLSQAALNDI----HSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 203
+ SN YL + DI GDV L +EW QL +DR+ LR ++F +GE+K+ L
Sbjct: 50 DPSNERYLRRIFNEDIIKQLMGSGDVISELEREWEQLSRDREALR-QIFPSGESKVVLPC 108
Query: 204 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPP 383
N++R+IWN ++IF + + +DLSP ++++ V LL + V+ + ED
Sbjct: 109 NLQRMIWNVQKIFHINKRSPTDLSPIRVIQGVRDLLQKC-VIVAGED------------- 154
Query: 384 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
LS+ A NATLLFQ VRA+L +K V E RL+ +AF W
Sbjct: 155 -------------RLSKQANENATLLFQCLVRATLCTKYVSEEFRLSTEAFEW 194
[19][TOP]
>UniRef100_B3FA71 RNA polymerase II largest subunit (Fragment) n=2 Tax=Pseudoperyphus
RepID=B3FA71_9CARA
Length = 227
Score = 97.8 bits (242), Expect = 4e-19
Identities = 62/173 (35%), Positives = 92/173 (53%), Gaps = 4/173 (2%)
Frame = +3
Query: 36 ESSNSPYLSQAALNDI----HSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 203
+ SN YL + DI GDV L +EW QL +DR+ LR ++F +GE+K+ L
Sbjct: 50 DPSNERYLRRIFNEDIIKQLMGSGDVISELEREWEQLSRDREALR-QIFPSGESKVVLPC 108
Query: 204 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPP 383
N++R+IWN ++IF + + +DLSP ++++ V LL + V+ + ED
Sbjct: 109 NLQRMIWNVQKIFHINKRSPTDLSPIRVIQGVRDLLQKC-VIVAGED------------- 154
Query: 384 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
LS+ A NATLLFQ VRA+L +K V E RL+ +AF W
Sbjct: 155 -------------RLSKQANENATLLFQCLVRATLCTKCVSEEFRLSTEAFEW 194
[20][TOP]
>UniRef100_B3FA50 RNA polymerase II largest subunit (Fragment) n=1 Tax=Bembidion
coxendix RepID=B3FA50_9CARA
Length = 225
Score = 97.8 bits (242), Expect = 4e-19
Identities = 62/173 (35%), Positives = 92/173 (53%), Gaps = 4/173 (2%)
Frame = +3
Query: 36 ESSNSPYLSQAALNDI----HSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 203
+ SN YL + DI GDV L +EW QL +DR+ LR ++F +GE+K+ L
Sbjct: 48 DPSNERYLRRIFNEDIIKQLMGSGDVXSELEREWEQLSRDREALR-QIFPSGESKVVLPC 106
Query: 204 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPP 383
N++R+IWN ++IF + + +DLSP ++++ V LL + V+ + ED
Sbjct: 107 NLQRMIWNVQKIFHINKRSPTDLSPIRVIQGVRDLLQKC-VIVAGED------------- 152
Query: 384 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
LS+ A NATLLFQ VRA+L +K V E RL+ +AF W
Sbjct: 153 -------------RLSKQANENATLLFQCLVRATLCTKCVSEEFRLSTEAFEW 192
[21][TOP]
>UniRef100_B3FA43 RNA polymerase II largest subunit (Fragment) n=16 Tax=Bembidion
RepID=B3FA43_9CARA
Length = 227
Score = 97.8 bits (242), Expect = 4e-19
Identities = 62/173 (35%), Positives = 92/173 (53%), Gaps = 4/173 (2%)
Frame = +3
Query: 36 ESSNSPYLSQAALNDI----HSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 203
+ SN YL + DI GDV L +EW QL +DR+ LR ++F +GE+K+ L
Sbjct: 50 DPSNERYLRRIFNEDIIKQLMGSGDVISELEREWEQLSRDREALR-QIFPSGESKVVLPC 108
Query: 204 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPP 383
N++R+IWN ++IF + + +DLSP ++++ V LL + V+ + ED
Sbjct: 109 NLQRMIWNVQKIFHINKRSPTDLSPIRVIQGVRDLLQKC-VIVAGED------------- 154
Query: 384 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
LS+ A NATLLFQ VRA+L +K V E RL+ +AF W
Sbjct: 155 -------------RLSKQANENATLLFQCLVRATLCTKCVSEEFRLSTEAFEW 194
[22][TOP]
>UniRef100_B4YT40 DNA-directed RNA polymerase (Fragment) n=1 Tax=Dineutes sublineatus
RepID=B4YT40_9COLE
Length = 562
Score = 97.4 bits (241), Expect = 6e-19
Identities = 60/173 (34%), Positives = 91/173 (52%), Gaps = 4/173 (2%)
Frame = +3
Query: 36 ESSNSPYLSQAALNDI----HSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 203
+ SN YL + DI DV L +EW QL KDR+ LR ++F +GE+K+ L
Sbjct: 385 DPSNERYLRRIFNEDIIRQLMGSADVISELEREWEQLVKDRETLR-QIFPSGESKVVLPC 443
Query: 204 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPP 383
N++R+IWN ++IF + + ++DLSP ++++ V LL + ++ D+
Sbjct: 444 NLQRMIWNVQKIFHINKRAQTDLSPLRVIQGVRDLLQKCVIVAGDD-------------- 489
Query: 384 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
LS+ A NATLLFQ VRA+L +K V E RL+ +AF W
Sbjct: 490 -------------RLSKQANENATLLFQCLVRATLCTKCVSEEFRLSTEAFEW 529
[23][TOP]
>UniRef100_Q2PYS3 DNA-directed RNA polymerase (Fragment) n=1 Tax=Cladochytrium
replicatum RepID=Q2PYS3_9FUNG
Length = 981
Score = 97.4 bits (241), Expect = 6e-19
Identities = 62/158 (39%), Positives = 88/158 (55%), Gaps = 1/158 (0%)
Frame = +3
Query: 72 LNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEA-KLPLAVNIERLIWNAKRIFDV 248
+ D+ +V ELL E+ QL +DR LR E+F + LPL VN++R+IW A+++FD
Sbjct: 825 VKDVMESMEVQELLHNEYDQLYEDRRVLREEIFAAEHSFSLPLPVNLKRVIWKAQKLFDR 884
Query: 249 RQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKEL 428
R+ +SDL P I++ V+ LL RT V+ + EL
Sbjct: 885 RK--QSDLHPRHIIKSVQELLERTVVIRGKD---------------------------EL 915
Query: 429 SETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
S AQ NATLLFQ+ VR++LA++ VL E RL R+AF W
Sbjct: 916 SVEAQANATLLFQILVRSTLATRRVLEEFRLDRRAFDW 953
[24][TOP]
>UniRef100_UPI000051A77E PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
isoform 2 n=1 Tax=Apis mellifera RepID=UPI000051A77E
Length = 1422
Score = 97.1 bits (240), Expect = 7e-19
Identities = 60/173 (34%), Positives = 91/173 (52%), Gaps = 4/173 (2%)
Frame = +3
Query: 36 ESSNSPYLSQAALNDI----HSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 203
+ +N YL + DI G+V L +EW QL KDR LR E+F +GE+K+ L
Sbjct: 915 DPTNERYLRRIFNEDIVREMMGSGEVISELEREWEQLNKDRAVLR-EIFPSGESKVVLPC 973
Query: 204 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPP 383
N++R+IWN ++IF + + +DLSP K+++ V+ LL + ++ D+
Sbjct: 974 NLQRMIWNVQKIFHINKRAPTDLSPMKVIQGVKDLLDKCIIVAGDD-------------- 1019
Query: 384 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
LS+ A NATLLFQ VR++L +K V E RL+ +AF W
Sbjct: 1020 -------------RLSKQANENATLLFQCLVRSTLCTKCVSEEFRLSSEAFEW 1059
[25][TOP]
>UniRef100_B4YT39 RNA polymerase II large subunit (Fragment) n=1 Tax=Pterostichus
melanarius RepID=B4YT39_PTEME
Length = 227
Score = 97.1 bits (240), Expect = 7e-19
Identities = 62/173 (35%), Positives = 92/173 (53%), Gaps = 4/173 (2%)
Frame = +3
Query: 36 ESSNSPYLSQAALNDI----HSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 203
+ SN YL + DI GDV L +EW QL +DR+ LR ++F +GE+K+ L
Sbjct: 50 DPSNERYLRRIFNEDIIRQLMGSGDVISELEREWEQLTRDREALR-QIFPSGESKVVLPC 108
Query: 204 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPP 383
N++R+IWN ++IF + + +DLSP ++++ V LL + V+ + ED
Sbjct: 109 NLQRMIWNVQKIFHINKRSPTDLSPIRVIQGVRDLLKKC-VIVAGED------------- 154
Query: 384 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
LS+ A NATLLFQ VRA+L +K V E RL+ +AF W
Sbjct: 155 -------------RLSKLANENATLLFQCLVRATLCTKCVSEEFRLSTEAFEW 194
[26][TOP]
>UniRef100_B4YT37 DNA-directed RNA polymerase (Fragment) n=1 Tax=Scaphinotus petersi
RepID=B4YT37_9CARA
Length = 369
Score = 97.1 bits (240), Expect = 7e-19
Identities = 60/173 (34%), Positives = 90/173 (52%), Gaps = 4/173 (2%)
Frame = +3
Query: 36 ESSNSPYLSQAALNDI----HSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 203
+ SN YL + DI GDV L +EW QL +DR+ LR ++F +GE+K+ L
Sbjct: 192 DPSNERYLRRIFNEDIIRQLMGSGDVISELEREWEQLSRDREALR-QIFPSGESKVVLPC 250
Query: 204 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPP 383
N++R+IWN ++IF + + +DLSP ++++ V LL + ++ +
Sbjct: 251 NLQRMIWNVQKIFHINKRAPTDLSPIRVIQGVRDLLQKCVIVAGKD-------------- 296
Query: 384 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
LSE A NATLLFQ VRA+L +K V E RL+ +AF W
Sbjct: 297 -------------RLSEQANENATLLFQCLVRATLCTKCVSEEFRLSSEAFEW 336
[27][TOP]
>UniRef100_B4YT36 DNA-directed RNA polymerase (Fragment) n=1 Tax=Chauliognathus
opacus RepID=B4YT36_9COLE
Length = 629
Score = 97.1 bits (240), Expect = 7e-19
Identities = 58/173 (33%), Positives = 92/173 (53%), Gaps = 4/173 (2%)
Frame = +3
Query: 36 ESSNSPYLSQAALNDIH----SGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 203
+ SN YL + D+ G+V L +EW QL+KDR+ LR ++F +GE+K+ L
Sbjct: 452 DPSNERYLRRIFNEDVSRQLMGSGEVISELEREWEQLQKDREALR-QIFPSGESKVVLPC 510
Query: 204 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPP 383
N++R+IWN ++IF + + +DLSP ++++ V LL + ++ D+
Sbjct: 511 NLQRMIWNVQKIFHINKRAPTDLSPLRVIQGVRELLKKCIIVAGDD-------------- 556
Query: 384 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
LS+ A NATLLFQ VR++L +K V E RL+ +AF W
Sbjct: 557 -------------RLSKQANENATLLFQCLVRSTLCTKCVSEEFRLSTEAFEW 596
[28][TOP]
>UniRef100_Q9NJJ2 DNA-directed RNA polymerase (Fragment) n=1 Tax=Tomocerus sp.
jcrjws1 RepID=Q9NJJ2_9HEXA
Length = 543
Score = 96.3 bits (238), Expect = 1e-18
Identities = 57/173 (32%), Positives = 91/173 (52%), Gaps = 4/173 (2%)
Frame = +3
Query: 36 ESSNSPYL----SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 203
+ +N YL ++ + DI G+V + KEW L+KDR LR ++F TGE K+ L
Sbjct: 383 DPTNERYLRRVFTEDVMRDIMGSGEVISAIEKEWEALQKDRAVLR-QIFPTGENKVVLPC 441
Query: 204 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPP 383
N++R+IWN ++IF + + +DL+P +++ VE LL + ++ ++
Sbjct: 442 NLQRMIWNVQKIFHINKRAPTDLNPVRVIEGVEDLLKKCVIVVGED-------------- 487
Query: 384 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
LS+ A NATLLFQ VR++L +K V E RL+ +AF W
Sbjct: 488 -------------RLSKQANANATLLFQCLVRSTLCTKRVAEEFRLSSEAFEW 527
[29][TOP]
>UniRef100_B4YT41 DNA-directed RNA polymerase (Fragment) n=1 Tax=Macrogyrus oblongus
RepID=B4YT41_9COLE
Length = 554
Score = 96.3 bits (238), Expect = 1e-18
Identities = 62/173 (35%), Positives = 91/173 (52%), Gaps = 4/173 (2%)
Frame = +3
Query: 36 ESSNSPYLSQAALNDI----HSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 203
+ SN YL + DI GDV L EW QL++DR+ LR ++F GE+K+ L
Sbjct: 385 DPSNERYLRRIFNEDIIRQLMGSGDVISELELEWEQLRRDREALR-QIFPNGESKVVLPC 443
Query: 204 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPP 383
N++R+IWN ++IF + + +DLSP ++++ V LL R V+ + ED
Sbjct: 444 NLQRMIWNVQKIFHINKRAPTDLSPLRVIQGVRELLQRC-VIVAGED------------- 489
Query: 384 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
LS+ A NATLLFQ VR++L +K V E RL+ +AF W
Sbjct: 490 -------------RLSKQANENATLLFQCLVRSTLCTKCVSEEFRLSTEAFEW 529
[30][TOP]
>UniRef100_B3FA52 RNA polymerase II largest subunit (Fragment) n=1 Tax=Bembidion
levettei RepID=B3FA52_9CARA
Length = 226
Score = 95.9 bits (237), Expect = 2e-18
Identities = 61/173 (35%), Positives = 91/173 (52%), Gaps = 4/173 (2%)
Frame = +3
Query: 36 ESSNSPYLSQAALNDI----HSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 203
+ SN YL + DI GDV L +EW QL +DR+ LR ++F +GE+K+ L
Sbjct: 49 DPSNERYLRRIFNEDIIKQLMGSGDVISELEREWEQLSRDREALR-QIFPSGESKVVLPC 107
Query: 204 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPP 383
N++R+IWN ++IF + + +DLSP ++++ V LL + V+ + ED
Sbjct: 108 NLQRMIWNVQKIFHINKRSPTDLSPIRVIQGVRDLLQKC-VIVAGED------------- 153
Query: 384 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
LS+ NATLLFQ VRA+L +K V E RL+ +AF W
Sbjct: 154 -------------RLSKQXNENATLLFQCLVRATLCTKCVSEEFRLSTEAFEW 193
[31][TOP]
>UniRef100_B3FA46 RNA polymerase II largest subunit (Fragment) n=1 Tax=Bembidion
bifossulatum RepID=B3FA46_9CARA
Length = 227
Score = 95.9 bits (237), Expect = 2e-18
Identities = 61/173 (35%), Positives = 91/173 (52%), Gaps = 4/173 (2%)
Frame = +3
Query: 36 ESSNSPYLSQAALNDI----HSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 203
+ SN YL + DI GDV L +EW QL +DR+ LR ++F +GE+K+ L
Sbjct: 50 DPSNERYLRRIFNEDIIKQLMGSGDVISELEREWEQLSRDREALR-QIFPSGESKVVLPC 108
Query: 204 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPP 383
N++R+IWN ++IF + + +DLSP ++++ V LL + V+ + ED
Sbjct: 109 NLQRMIWNVQKIFHINKRSPTDLSPIRVIQGVRDLLQKC-VIVAGED------------- 154
Query: 384 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
LS+ NATLLFQ VRA+L +K V E RL+ +AF W
Sbjct: 155 -------------RLSKQXNENATLLFQCLVRATLCTKCVSEEFRLSTEAFEW 194
[32][TOP]
>UniRef100_UPI000186D846 predicted protein n=1 Tax=Pediculus humanus corporis
RepID=UPI000186D846
Length = 1885
Score = 95.5 bits (236), Expect = 2e-18
Identities = 59/173 (34%), Positives = 94/173 (54%), Gaps = 4/173 (2%)
Frame = +3
Query: 36 ESSNSPYL----SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 203
+++N YL ++ L ++ G+V L KEW QL+KDR+ LR ++F +GE K+ L
Sbjct: 908 DATNERYLRRIFNENILKELMGSGEVISYLEKEWDQLQKDREALR-QIFPSGENKVVLPC 966
Query: 204 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPP 383
N++R+IWN ++IF + + +DLSP +++ V LL + V+ + ED
Sbjct: 967 NLQRMIWNVQKIFHINKRAPTDLSPLRVIEGVRDLLQKC-VIVAGED------------- 1012
Query: 384 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
LS+ A NATLLFQ VR++L +K V + RL+ +AF W
Sbjct: 1013 -------------HLSKQANENATLLFQCLVRSTLCTKCVSEDMRLSTEAFEW 1052
[33][TOP]
>UniRef100_Q30BD8 DNA-directed RNA polymerase (Fragment) n=1 Tax=Cyanophora paradoxa
RepID=Q30BD8_CYAPA
Length = 1000
Score = 95.5 bits (236), Expect = 2e-18
Identities = 59/163 (36%), Positives = 86/163 (52%)
Frame = +3
Query: 54 YLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAK 233
+L +I + L KE+ QL KDR+ LR E+ ++GE + L VN++RLIWNA+
Sbjct: 830 FLDPDVAAEIRGSAVIRHQLDKEYEQLLKDREQLRSEIVQSGEGAVHLPVNLKRLIWNAQ 889
Query: 234 RIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDE 413
+I+ V + SDL P I++ VELL + V+ ++
Sbjct: 890 KIYKVDTSKPSDLRPDIILQGVELLSTQLVVIAGED------------------------ 925
Query: 414 ALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
LS AQ NAT LF +H+RA+LA+K VLSE+RL+ A W
Sbjct: 926 ---TLSREAQENATRLFNIHLRATLATKRVLSEYRLSAAALEW 965
[34][TOP]
>UniRef100_B4YT48 DNA-directed RNA polymerase (Fragment) n=2 Tax=Notaphus
RepID=B4YT48_9CARA
Length = 562
Score = 95.5 bits (236), Expect = 2e-18
Identities = 61/173 (35%), Positives = 91/173 (52%), Gaps = 4/173 (2%)
Frame = +3
Query: 36 ESSNSPYLSQAALNDI----HSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 203
+ SN YL + DI DV L +EW QL +DR+ LR ++F +GE+K+ L
Sbjct: 385 DPSNERYLRRIFNEDIIKQLMGSSDVISELEREWEQLSRDREALR-QIFPSGESKVVLPC 443
Query: 204 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPP 383
N++R+IWN ++IF + + +DLSP ++++ V LL + V+ + ED
Sbjct: 444 NLQRMIWNVQKIFHINKRSPTDLSPIRVIQGVRDLLQKC-VIVAGED------------- 489
Query: 384 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
LS+ A NATLLFQ VRA+L +K V E RL+ +AF W
Sbjct: 490 -------------RLSKQANENATLLFQCLVRATLCTKCVSEEFRLSTEAFEW 529
[35][TOP]
>UniRef100_B3FA44 RNA polymerase II largest subunit (Fragment) n=3 Tax=Odontium
subgenus complex RepID=B3FA44_9CARA
Length = 227
Score = 95.5 bits (236), Expect = 2e-18
Identities = 61/173 (35%), Positives = 91/173 (52%), Gaps = 4/173 (2%)
Frame = +3
Query: 36 ESSNSPYLSQAALNDI----HSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 203
+ SN YL + DI GDV L + W QL +DR+ LR ++F +GE+K+ L
Sbjct: 50 DPSNERYLRRIFNEDIIKQLMGSGDVISELERXWEQLSRDREALR-QIFPSGESKVVLPC 108
Query: 204 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPP 383
N++R+IWN ++IF + + +DLSP ++++ V LL + V+ + ED
Sbjct: 109 NLQRMIWNVQKIFHINKRSPTDLSPIRVIQGVRDLLQKC-VIVAGED------------- 154
Query: 384 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
LS+ A NATLLFQ VRA+L +K V E RL+ +AF W
Sbjct: 155 -------------RLSKQANENATLLFQCLVRATLCTKCVSEEFRLSTEAFEW 194
[36][TOP]
>UniRef100_B3FA45 RNA polymerase II largest subunit (Fragment) n=1 Tax=Bembidion
balli RepID=B3FA45_9CARA
Length = 220
Score = 95.1 bits (235), Expect = 3e-18
Identities = 61/173 (35%), Positives = 91/173 (52%), Gaps = 4/173 (2%)
Frame = +3
Query: 36 ESSNSPYLSQAALNDI----HSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 203
+ SN YL + DI GDV L +EW QL +DR+ LR ++F +GE+K+ L
Sbjct: 43 DPSNERYLRRIFNEDIIKQLMGSGDVISELEREWEQLSRDREALR-QIFPSGESKVVLPC 101
Query: 204 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPP 383
N++R+IWN ++IF + + +DLSP ++++ V LL + V+ + ED
Sbjct: 102 NLQRMIWNVQKIFHINKRSPTDLSPIRVIQGVRDLLQKC-VIVAGED------------- 147
Query: 384 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
LS+ A NATLLFQ VRA+L +K V E RL+ +A W
Sbjct: 148 -------------RLSKQANENATLLFQCLVRATLCTKCVSEEFRLSTEAXEW 187
[37][TOP]
>UniRef100_Q4P7Q0 DNA-directed RNA polymerase n=1 Tax=Ustilago maydis
RepID=Q4P7Q0_USTMA
Length = 1774
Score = 95.1 bits (235), Expect = 3e-18
Identities = 55/170 (32%), Positives = 95/170 (55%), Gaps = 15/170 (8%)
Frame = +3
Query: 78 DIHSGG---------------DVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIE 212
D+H GG ++ +LL +E+AQL+ DR+ LRHE+F++ + ++ L +N+
Sbjct: 914 DLHDGGFKKGTLRPGLGDWSQELQDLLDEEFAQLEFDRNLLRHEIFQSDQVQVRLPMNVA 973
Query: 213 RLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGS 392
RL+ NA++IF V +DLSP++++ + +L R V+ D D I+RE
Sbjct: 974 RLVLNAQQIFHVDPRKPTDLSPAEVIIGLRNVLDRLIVIRGD-----DPISRE------- 1021
Query: 393 ASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
AQ+NATLLF++H+R+ L SK+V+ +H + ++A+ W
Sbjct: 1022 ---------------AQMNATLLFKIHLRSYLCSKMVIEQHHINKEAWEW 1056
[38][TOP]
>UniRef100_A9U396 DNA-directed RNA polymerase n=1 Tax=Physcomitrella patens subsp.
patens RepID=A9U396_PHYPA
Length = 1742
Score = 94.7 bits (234), Expect = 4e-18
Identities = 59/163 (36%), Positives = 87/163 (53%)
Frame = +3
Query: 54 YLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAK 233
Y+S A DI + ++ + E ++L+ DR + E+ TGE+ PL VN++RLIWNA+
Sbjct: 931 YMSAEAAEDIKTIQEIRNVFDAEVSKLEADRRQMGLEIAPTGESNWPLPVNLKRLIWNAQ 990
Query: 234 RIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDE 413
+IF V SD+ P +IV VE L R RV+ ++
Sbjct: 991 KIFKVDLRKSSDMHPMEIVEAVENLQERLRVVPGND------------------------ 1026
Query: 414 ALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
++S AQ NATL F +R++LASK VL ++RLTR+AF W
Sbjct: 1027 ---QISMEAQRNATLFFGCLLRSTLASKRVLKDYRLTREAFEW 1066
[39][TOP]
>UniRef100_B4YT43 DNA-directed RNA polymerase (Fragment) n=1 Tax=Laccophilus pictus
RepID=B4YT43_9DYTI
Length = 562
Score = 94.7 bits (234), Expect = 4e-18
Identities = 58/173 (33%), Positives = 90/173 (52%), Gaps = 4/173 (2%)
Frame = +3
Query: 36 ESSNSPYLSQAALNDI----HSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 203
++SN YL + D+ GDV L EW QL+KDR+ LR ++F +GE+ + L
Sbjct: 385 DASNEKYLRRVFNEDVIKLMMGSGDVISELELEWDQLQKDREALR-QIFPSGESNVVLPC 443
Query: 204 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPP 383
N++R+IWN ++IF + + +DLSP ++++ V LL R ++ +
Sbjct: 444 NLQRMIWNVQKIFHINKRAPTDLSPLRVIQGVRELLQRCIIVAGTD-------------- 489
Query: 384 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
LS A NATLLFQ VR++L +K V E+RL+ +AF W
Sbjct: 490 -------------RLSTLANDNATLLFQCLVRSTLCTKYVSEEYRLSTEAFEW 529
[40][TOP]
>UniRef100_B3FA42 RNA polymerase II largest subunit (Fragment) n=1 Tax=Bembidion
californicum RepID=B3FA42_9CARA
Length = 227
Score = 94.7 bits (234), Expect = 4e-18
Identities = 60/173 (34%), Positives = 91/173 (52%), Gaps = 4/173 (2%)
Frame = +3
Query: 36 ESSNSPYLSQAALNDI----HSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 203
+ SN YL + DI GDV L + W QL ++R+ LR ++F +GE+K+ L
Sbjct: 50 DPSNERYLRRIFNEDIIKQLMGSGDVISELERXWEQLSRBREALR-QIFPSGESKVVLPC 108
Query: 204 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPP 383
N++R+IWN ++IF + + +DLSP ++++ V LL + V+ + ED
Sbjct: 109 NLQRMIWNVQKIFHINKRSPTDLSPIRVIQGVRDLLQKC-VIVAGED------------- 154
Query: 384 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
LS+ A NATLLFQ VRA+L +K V E RL+ +AF W
Sbjct: 155 -------------RLSKQANENATLLFQCLVRATLCTKCVSEEFRLSTEAFEW 194
[41][TOP]
>UniRef100_P35084 DNA-directed RNA polymerase II subunit rpb1 n=1 Tax=Dictyostelium
discoideum RepID=RPB1_DICDI
Length = 1727
Score = 94.7 bits (234), Expect = 4e-18
Identities = 53/163 (32%), Positives = 86/163 (52%)
Frame = +3
Query: 54 YLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAK 233
++ + + + + L KE+ ++K DR LR+E+ +GEA PL VN+ RLI NA+
Sbjct: 919 WMDPLVIEHVRNDSLTRDTLEKEFERIKSDRSLLRNEIIPSGEANWPLPVNLRRLINNAQ 978
Query: 234 RIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDE 413
++F++ SDL+P+ +V +E L+ R +++ + + E DE
Sbjct: 979 KLFNIDIRRVSDLNPAVVVLEIEKLVARLKIIATADTTE------------------DDE 1020
Query: 414 ALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
NAT+LF + VR++ ASK VL+E RLT KAF W
Sbjct: 1021 NFNRAWAEVYFNATMLFSILVRSTFASKRVLTEFRLTEKAFLW 1063
[42][TOP]
>UniRef100_UPI000179338A PREDICTED: similar to DNA-directed RNA polymerase II subunit RPB1
(RNA polymerase II subunit B1) (DNA-directed RNA
polymerase III largest subunit) n=1 Tax=Acyrthosiphon
pisum RepID=UPI000179338A
Length = 1862
Score = 94.4 bits (233), Expect = 5e-18
Identities = 54/161 (33%), Positives = 86/161 (53%)
Frame = +3
Query: 60 SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRI 239
++ L D+ D L +EW QL DRD LR E+F +GE+K+ L N++R+IWN ++I
Sbjct: 928 NEDVLKDLTGSNDSVTELEREWEQLTTDRDTLR-EIFPSGESKVVLPCNLKRMIWNVQKI 986
Query: 240 FDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEAL 419
F + + ++DL+P K++ V+ LL + ++ +
Sbjct: 987 FHINKRGQTDLNPVKVINGVKELLDKCVIVAGGD-------------------------- 1020
Query: 420 KELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
ELS+ A NATLLFQ VR++L +K+V RL+ +AF W
Sbjct: 1021 -ELSKKANHNATLLFQCLVRSTLCTKLVSERFRLSSEAFEW 1060
[43][TOP]
>UniRef100_Q9U5F6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Eptatretus burgeri
RepID=Q9U5F6_EPTBU
Length = 595
Score = 94.4 bits (233), Expect = 5e-18
Identities = 51/162 (31%), Positives = 87/162 (53%)
Frame = +3
Query: 57 LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 236
L + ++++ S + L +E+ Q++ DR+ LR VF TG++K+ L N++R+IWNA++
Sbjct: 433 LHEDVVSEVMSSAHIQNCLEREFEQIRDDREVLR-AVFPTGDSKVVLPCNLQRMIWNAQK 491
Query: 237 IFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEA 416
IF + +DL+P ++V V L + +++ D+
Sbjct: 492 IFHINTRSSTDLNPLRVVEGVNDLTQKLQIVKGDD------------------------- 526
Query: 417 LKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
+S AQ NATLLF HVRA+L ++ + EHRL+ +AF W
Sbjct: 527 --PISRQAQQNATLLFNCHVRATLCTRRLAEEHRLSSEAFEW 566
[44][TOP]
>UniRef100_A9QMT2 RNA polymerase 2 (Fragment) n=1 Tax=Pellioditis typica
RepID=A9QMT2_9PELO
Length = 488
Score = 94.4 bits (233), Expect = 5e-18
Identities = 52/169 (30%), Positives = 90/169 (53%)
Frame = +3
Query: 36 ESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIER 215
E + + Y ++ + ++ + + + KEWAQL++DR LR ++F TG AK+ L N++R
Sbjct: 118 EKTLTKYYTEDVVRELQGSSESLKEVEKEWAQLEEDRRLLR-KIFPTGNAKIVLPCNLQR 176
Query: 216 LIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSA 395
LIWNA++IF V +DL+P +++ V L + +++ D+
Sbjct: 177 LIWNAQKIFHVETRKPTDLNPLRVIEGVRELSEKLVIVSGDD------------------ 218
Query: 396 SGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
+S+ AQ NATLL + +R++L SK + S +RL +AF W
Sbjct: 219 ---------RISKQAQYNATLLMNILIRSTLCSKKMASTYRLNSEAFEW 258
[45][TOP]
>UniRef100_A9QME0 DNA-directed RNA polymerase (Fragment) n=1 Tax=Pellioditis typica
RepID=A9QME0_9PELO
Length = 633
Score = 94.4 bits (233), Expect = 5e-18
Identities = 52/169 (30%), Positives = 90/169 (53%)
Frame = +3
Query: 36 ESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIER 215
E + + Y ++ + ++ + + + KEWAQL++DR LR ++F TG AK+ L N++R
Sbjct: 132 EKTLTKYYTEDVVRELQGSSESLKEVEKEWAQLEEDRRLLR-KIFPTGNAKIVLPCNLQR 190
Query: 216 LIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSA 395
LIWNA++IF V +DL+P +++ V L + +++ D+
Sbjct: 191 LIWNAQKIFHVETRKPTDLNPLRVIEGVRELSEKLVIVSGDD------------------ 232
Query: 396 SGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
+S+ AQ NATLL + +R++L SK + S +RL +AF W
Sbjct: 233 ---------RISKQAQYNATLLMNILIRSTLCSKKMASTYRLNSEAFEW 272
[46][TOP]
>UniRef100_Q2TUN5 DNA-directed RNA polymerase (Fragment) n=1 Tax=Ephedra viridis
RepID=Q2TUN5_EPHVI
Length = 1013
Score = 94.0 bits (232), Expect = 6e-18
Identities = 59/170 (34%), Positives = 87/170 (51%)
Frame = +3
Query: 33 QESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIE 212
QE+ + Y+ +DI + + ++L E+ +L+ DR L E+ TGE PL VN++
Sbjct: 843 QENWHPTYMLPEMADDIKNISEFQDVLVAEYKKLQLDRRQLGMEIAPTGENSWPLPVNLK 902
Query: 213 RLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGS 392
RLIWNA++IF V SD+ P +IV ++ L R +V+ D+
Sbjct: 903 RLIWNAQKIFKVDPRKTSDMQPLEIVDTIDKLQERLKVVPGDD----------------- 945
Query: 393 ASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
LS AQ NATL F + +R+ ASK VL E+ LTR+AF W
Sbjct: 946 ----------PLSFEAQKNATLFFNILLRSVFASKRVLKEYHLTREAFDW 985
[47][TOP]
>UniRef100_O02462 DNA-directed RNA polymerase (Fragment) n=1 Tax=Pedetontus saltator
RepID=O02462_9INSE
Length = 722
Score = 94.0 bits (232), Expect = 6e-18
Identities = 55/173 (31%), Positives = 92/173 (53%), Gaps = 4/173 (2%)
Frame = +3
Query: 36 ESSNSPYL----SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 203
+ +N YL ++ + ++ G+V L +EW QL+KDRD LR ++F G+ K L
Sbjct: 562 DPTNERYLRRIFNEDIMKELMGSGEVISELEREWEQLQKDRDCLR-QIFPNGDNKTVLPC 620
Query: 204 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPP 383
N++R+IWN ++IF + + +DLSP K++R V+ LL + ++ ++
Sbjct: 621 NLQRMIWNVQKIFHINKRATTDLSPLKVIRGVQHLLSKCIIVAGED-------------- 666
Query: 384 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
LS+ A NATLLF+ VR++L ++ V E RL+ +AF W
Sbjct: 667 -------------HLSKLANENATLLFRCLVRSTLCTRRVAEEFRLSSEAFEW 706
[48][TOP]
>UniRef100_B4YT34 DNA-directed RNA polymerase (Fragment) n=1 Tax=Sialis sp. ALW-2008
RepID=B4YT34_9NEOP
Length = 555
Score = 94.0 bits (232), Expect = 6e-18
Identities = 59/174 (33%), Positives = 89/174 (51%), Gaps = 5/174 (2%)
Frame = +3
Query: 36 ESSNSPYLSQAALNDI-----HSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLA 200
+ N YL + +I SGGD+ + L KEW QL KDR+ LR ++F +G+ K+ L
Sbjct: 385 DPGNERYLRRVFTEEIVRQLMASGGDLIQALEKEWDQLVKDREALR-QIFPSGDNKVVLP 443
Query: 201 VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLP 380
N++R+IWN ++IF + +DLSP +++ V LL R ++ D+
Sbjct: 444 CNLQRMIWNVQKIFHINGRAPTDLSPLRVLDGVSELLRRCVIVAGDD------------- 490
Query: 381 PDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
LS A NATLLF+ VR++L +K V E RL+ +AF W
Sbjct: 491 --------------PLSRQANENATLLFRCLVRSTLCTKRVAEEFRLSHEAFEW 530
[49][TOP]
>UniRef100_Q1ACV3 RNA polymerase II largest subunit (Fragment) n=1 Tax=Acer palmatum
RepID=Q1ACV3_ACEPM
Length = 240
Score = 93.2 bits (230), Expect = 1e-17
Identities = 54/170 (31%), Positives = 90/170 (52%)
Frame = +3
Query: 33 QESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIE 212
Q++ N Y+ Q ++++ + ++ ++ E +L+ DR L E+ +G++ P+ VN++
Sbjct: 73 QDNWNPNYMLQEFIDBLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPMPVNLK 132
Query: 213 RLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGS 392
RLIWNA++ F V SD+ P ++V ++ L R +V+ D+
Sbjct: 133 RLIWNAQKTFKVDPRRPSDMHPMEVVEAIDKLQERLKVVPGDD----------------- 175
Query: 393 ASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
LS AQ NATL F + +R++ ASK VL EHRLTR+AF W
Sbjct: 176 ----------ALSVEAQKNATLFFNILLRSTFASKRVLQEHRLTREAFEW 215
[50][TOP]
>UniRef100_Q9C428 DNA-directed RNA polymerase (Fragment) n=1 Tax=Monoblepharis
macrandra RepID=Q9C428_9FUNG
Length = 1603
Score = 93.2 bits (230), Expect = 1e-17
Identities = 56/146 (38%), Positives = 78/146 (53%)
Frame = +3
Query: 105 ELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSK 284
++L E+ QL +DR+ +R+ +F+ G++ PL NI RLIWNA+ + + N S+L P +
Sbjct: 872 KVLEMEYTQLVEDRNVMRNFIFRNGDSNWPLPSNIRRLIWNARNMAKISHNTLSNLRPEE 931
Query: 285 IVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLF 464
IVR V LL R V+T ++ LS AQ NATLLF
Sbjct: 932 IVRDVNDLLSRCIVITGEDG---------------------------LSTMAQHNATLLF 964
Query: 465 QVHVRASLASKVVLSEHRLTRKAFTW 542
+ VR LA+K V +EHRL R AF W
Sbjct: 965 NILVRHLLATKRVYAEHRLNRNAFRW 990
[51][TOP]
>UniRef100_A9QME8 RNA polymerase 2 (Fragment) n=1 Tax=Choriorhabditis dudichi
RepID=A9QME8_9BILA
Length = 252
Score = 92.8 bits (229), Expect = 1e-17
Identities = 56/181 (30%), Positives = 91/181 (50%), Gaps = 3/181 (1%)
Frame = +3
Query: 9 LTEPDLHLQESSNS---PYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTG 179
L E D L S Y + D+ + + +EW QL++DR LR ++F TG
Sbjct: 93 LFEKDFKLDLSDEKMLKKYYKDEVVRDLQGSSEALNEVEEEWRQLEEDRRLLR-KIFPTG 151
Query: 180 EAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDA 359
+AK+ L N++RLIWNA++IF V +DL+P +++ V+ L + ++ S ED
Sbjct: 152 DAKIVLPCNLQRLIWNAQKIFHVHMRQTTDLNPVRVIEGVK-ELSKKLIIVSGED----- 205
Query: 360 IAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFT 539
++S+ AQ NATLL + +R++L SK + + H+L +AF
Sbjct: 206 ---------------------KISKQAQYNATLLMNILIRSTLCSKKMATTHKLNAEAFE 244
Query: 540 W 542
W
Sbjct: 245 W 245
[52][TOP]
>UniRef100_B9SXC0 DNA-directed RNA polymerase n=1 Tax=Ricinus communis
RepID=B9SXC0_RICCO
Length = 1855
Score = 91.7 bits (226), Expect = 3e-17
Identities = 57/169 (33%), Positives = 89/169 (52%)
Frame = +3
Query: 36 ESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIER 215
E+ N Y+ Q ++D+ + ++ ++ E +L+ DR L E+ TG++ PL VN+ R
Sbjct: 922 ENWNPTYMYQDHIDDLKNIRELRDVFDAEVQKLEADRYQLGTEIATTGDSSWPLPVNLRR 981
Query: 216 LIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSA 395
LIWNA++ F V + SD+ P + V V+ L R +V+ D+
Sbjct: 982 LIWNAQKTFKVDKRRPSDIHPMEAVEAVDKLQERLKVVPGDD------------------ 1023
Query: 396 SGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
LS AQ NATL F + +R++LASK VL ++RLTR+AF W
Sbjct: 1024 ---------PLSVEAQKNATLFFGILLRSTLASKRVLEDYRLTREAFDW 1063
[53][TOP]
>UniRef100_B7SNX4 DNA-directed RNA polymerase (Fragment) n=1 Tax=Pisum sativum
RepID=B7SNX4_PEA
Length = 1010
Score = 91.7 bits (226), Expect = 3e-17
Identities = 57/169 (33%), Positives = 87/169 (51%)
Frame = +3
Query: 36 ESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIER 215
E+ Y+ + + D+ + + + E +L DR L E+ TG++ LPL VN++R
Sbjct: 841 ENWKPTYMLEEPVEDLKTIREFRNVFEAEVQKLDADRFQLATEIATTGDSSLPLPVNLKR 900
Query: 216 LIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSA 395
LIWNA++ F V SD+ P +IV ++ L R RV+ D+
Sbjct: 901 LIWNAQKTFKVDFRRPSDMHPMEIVEAIDKLQERLRVVPGDD------------------ 942
Query: 396 SGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
LS+ AQ NATLLF + +R++ ASK VL E+RL+R+AF W
Sbjct: 943 ---------LLSQEAQKNATLLFNILLRSTFASKRVLEEYRLSREAFEW 982
[54][TOP]
>UniRef100_Q2N108 DNA-directed RNA polymerase II largest subunit (Fragment) n=1
Tax=Aphrocallistes vastus RepID=Q2N108_9METZ
Length = 254
Score = 91.3 bits (225), Expect = 4e-17
Identities = 55/180 (30%), Positives = 92/180 (51%)
Frame = +3
Query: 3 YHLTEPDLHLQESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGE 182
YH + + E ++S+ ++++ + +E+A+L DR LR E+FK G
Sbjct: 77 YHFS----YTNERQLKKFISEDVIHELGVNPEAQAKFEEEFARLHDDRMILR-EIFKDGN 131
Query: 183 AKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAI 362
+K+ L N+ R+IWNA++ F + + SDL+P K++ VE L + V+ ED+
Sbjct: 132 SKVVLPCNLSRMIWNAQKTFKINTRNNSDLNPLKVIEGVEELCKKL-VIVDGEDS----- 185
Query: 363 AREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
+S+ AQ NATLL +H+R++LA K V+ EH L+ +AF W
Sbjct: 186 ---------------------ISKEAQYNATLLINIHLRSTLACKRVMEEHHLSSQAFDW 224
[55][TOP]
>UniRef100_Q4SF83 DNA-directed RNA polymerase (Fragment) n=1 Tax=Tetraodon nigroviridis
RepID=Q4SF83_TETNG
Length = 1745
Score = 90.5 bits (223), Expect = 7e-17
Identities = 55/170 (32%), Positives = 90/170 (52%), Gaps = 8/170 (4%)
Frame = +3
Query: 57 LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 236
L + + D+ + V L +E+ ++K+DR+ LR +F TG++K+ L N+ R+IWNA++
Sbjct: 808 LQEDVVKDVMTNAHVQSSLEREFEKMKEDREILR-AIFPTGDSKVVLPCNLARMIWNAQK 866
Query: 237 IFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEA 416
IF + +DLSP ++V + + + S +IA SG + +
Sbjct: 867 IFRINTRTPTDLSPLRVVEGILSSVSLNEICCSPPFTLNISIADIQFEHVFGLSGTHELS 926
Query: 417 LK--------ELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
K LS AQ NATLLF +H+R++L SK + E RL+ +AF W
Sbjct: 927 KKLVIVNGDDPLSRQAQQNATLLFNIHLRSTLCSKRMTEEFRLSTEAFDW 976
[56][TOP]
>UniRef100_Q23699 DNA-directed RNA polymerase (Fragment) n=1 Tax=Crassostrea gigas
RepID=Q23699_CRAGI
Length = 1340
Score = 90.5 bits (223), Expect = 7e-17
Identities = 55/162 (33%), Positives = 83/162 (51%)
Frame = +3
Query: 57 LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 236
LS+ + D+ L +EW QL++DRD LR +F TG++K+ L N++R+IWNA++
Sbjct: 845 LSEEVIKDLMGDALAVSQLDREWEQLREDRDILR-SIFPTGDSKVVLPCNLQRMIWNAQK 903
Query: 237 IFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEA 416
IF + + +DL P K+V VE L R V+ +
Sbjct: 904 IFRIDTHKPTDLHPIKVVEGVEDLCKRLIVVAGGD------------------------- 938
Query: 417 LKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
LS A NATLLF+ +R++L +K V E RL+ +AF W
Sbjct: 939 --RLSIQANANATLLFKCLIRSTLCAKRVTEEFRLSSEAFEW 978
[57][TOP]
>UniRef100_UPI0000546D90 PREDICTED: im:7136071 isoform 1 n=1 Tax=Danio rerio
RepID=UPI0000546D90
Length = 1972
Score = 90.1 bits (222), Expect = 9e-17
Identities = 50/162 (30%), Positives = 88/162 (54%)
Frame = +3
Query: 57 LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 236
L + + D+ + V L +E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++
Sbjct: 931 LQEDVVKDVMTNAHVQSSLEREFEKMREDREILR-AIFPTGDSKVVLPCNLARMIWNAQK 989
Query: 237 IFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEA 416
IF + +DL+P+++V V+ L + ++ D+
Sbjct: 990 IFRINPRAPTDLNPARVVDGVKELSKKLVIVNGDD------------------------- 1024
Query: 417 LKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
+LS AQ NATLLF +H+R++L SK + E RL+ +AF W
Sbjct: 1025 --QLSRQAQENATLLFNIHLRSTLCSKRMTEEFRLSTEAFDW 1064
[58][TOP]
>UniRef100_Q1ACT8 RNA polymerase II largest subunit (Fragment) n=1 Tax=Kalanchoe
tomentosa RepID=Q1ACT8_9MAGN
Length = 240
Score = 90.1 bits (222), Expect = 9e-17
Identities = 56/166 (33%), Positives = 85/166 (51%)
Frame = +3
Query: 45 NSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIW 224
N Y+ + D+ + + + E +L+ DR L E+ TG+ LP+ VN++RLIW
Sbjct: 77 NPSYMLPEHVEDLKTIREFRNVFDAEVQKLEADRYQLGTEIATTGDNSLPMPVNLKRLIW 136
Query: 225 NAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGP 404
NA++ F V SD+ P +IV ++ L R +V+ ++
Sbjct: 137 NAQKTFKVDSRRPSDMHPMEIVEAIDKLQERLKVVPGED--------------------- 175
Query: 405 QDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
LS AQ NATLLF + +R++ ASK VLSE+RLTR+AF W
Sbjct: 176 ------SLSIEAQKNATLLFNILLRSTFASKRVLSEYRLTREAFEW 215
[59][TOP]
>UniRef100_A9QMG2 RNA polymerase 2 (Fragment) n=1 Tax=Oscheius dolichura
RepID=A9QMG2_9BILA
Length = 273
Score = 90.1 bits (222), Expect = 9e-17
Identities = 52/157 (33%), Positives = 83/157 (52%)
Frame = +3
Query: 72 LNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVR 251
+ D+ D E + EWAQL++DR LR ++F TGE+K L N++RLIWNA++IF V
Sbjct: 134 IRDLQGSPDAIEEVENEWAQLEEDRRLLR-KIFSTGESKCVLPCNLQRLIWNAQKIFHVE 192
Query: 252 QNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELS 431
+ + L+P ++R V L + ++ ED +S
Sbjct: 193 KREPVCLNPLNVIRGVRSLSEKL-IIVGGED--------------------------RIS 225
Query: 432 ETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
+ AQ NATLL + +R++L +K + S H+L ++AF W
Sbjct: 226 KQAQYNATLLMNILLRSTLCAKKMASTHKLNQEAFEW 262
[60][TOP]
>UniRef100_A1YIB1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Phragmidium sp. MB
RepID=A1YIB1_9BASI
Length = 1013
Score = 90.1 bits (222), Expect = 9e-17
Identities = 58/160 (36%), Positives = 81/160 (50%)
Frame = +3
Query: 63 QAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIF 242
Q L+D S + +L KEW QL KDR LR +F G + PL VNI R+I NA++IF
Sbjct: 850 QVGLDD--SSAALQSVLDKEWEQLIKDRKMLREFIFTDGNGRKPLPVNIRRIIQNAQQIF 907
Query: 243 DVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALK 422
+ SDL P I++ V L +R V+ D+
Sbjct: 908 HIDFRKPSDLPPPDIIQMVNDLCNRLIVVRGDD--------------------------- 940
Query: 423 ELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
LS AQ NATLLF++ +R++ A++ VL E L+R+AF W
Sbjct: 941 ALSRAAQXNATLLFRILLRSNFATRRVLEEFHLSREAFVW 980
[61][TOP]
>UniRef100_UPI00017B0A92 UPI00017B0A92 related cluster n=1 Tax=Tetraodon nigroviridis
RepID=UPI00017B0A92
Length = 1714
Score = 89.7 bits (221), Expect = 1e-16
Identities = 51/162 (31%), Positives = 84/162 (51%)
Frame = +3
Query: 57 LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 236
L + + D+ + V L +E+ ++K+DR+ LR +F TG++K+ L N+ R+IWNA++
Sbjct: 912 LQEDVVKDVMTNAHVQSSLEREFEKMKEDREILR-AIFPTGDSKVVLPCNLARMIWNAQK 970
Query: 237 IFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEA 416
IF + +DLSP ++V L + ++ D+
Sbjct: 971 IFRINTRTPTDLSPLRVVEGTHELSKKLVIVNGDD------------------------- 1005
Query: 417 LKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
LS AQ NATLLF +H+R++L SK + E RL+ +AF W
Sbjct: 1006 --PLSRQAQQNATLLFNIHLRSTLCSKRMTEEFRLSTEAFDW 1045
[62][TOP]
>UniRef100_UPI00016E658E UPI00016E658E related cluster n=1 Tax=Takifugu rubripes
RepID=UPI00016E658E
Length = 1628
Score = 89.7 bits (221), Expect = 1e-16
Identities = 51/162 (31%), Positives = 85/162 (52%)
Frame = +3
Query: 57 LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 236
L + + D+ + V L +E+ ++K+DR+ LR +F TG++K+ L N+ R+IWNA++
Sbjct: 932 LQEDVVKDVMTNAHVQSSLEREFEKMKEDREILR-AIFPTGDSKVVLPCNLARMIWNAQK 990
Query: 237 IFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEA 416
IF + +DLSP ++V L + ++ D+
Sbjct: 991 IFRINTRTPTDLSPLRVVEGTHDLSKKLVIVNGDD------------------------- 1025
Query: 417 LKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
LS+ AQ NATLLF +H+R++L SK + E RL+ +AF W
Sbjct: 1026 --PLSKQAQQNATLLFNIHLRSTLCSKRMTEEFRLSTEAFDW 1065
[63][TOP]
>UniRef100_Q71ET3 DNA-directed RNA polymerase (Fragment) n=1 Tax=Psilotum nudum
RepID=Q71ET3_PSINU
Length = 1013
Score = 89.7 bits (221), Expect = 1e-16
Identities = 56/169 (33%), Positives = 88/169 (52%)
Frame = +3
Query: 36 ESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIER 215
E+ N Y+ + D+ + + + E +L+ DR L E+ +G+ PL VN++R
Sbjct: 844 ENWNPDYMLAEHVEDLKTIQEFRNVFDAEVQKLEADRRQLCTEIAPSGDNSWPLPVNLKR 903
Query: 216 LIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSA 395
LIWNA++IF V SD+ P +IV V+ L R +V+ ++
Sbjct: 904 LIWNAQKIFKVDFRKPSDMHPMEIVEAVDKLQERLKVVPGED------------------ 945
Query: 396 SGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
E+S+ AQ NATL F + +R++LASK VL E+RLT++AF W
Sbjct: 946 ---------EISKEAQKNATLFFNILLRSTLASKRVLKEYRLTKEAFEW 985
[64][TOP]
>UniRef100_B4MAN9 DNA-directed RNA polymerase n=1 Tax=Drosophila virilis
RepID=B4MAN9_DROVI
Length = 1889
Score = 89.7 bits (221), Expect = 1e-16
Identities = 54/171 (31%), Positives = 88/171 (51%), Gaps = 4/171 (2%)
Frame = +3
Query: 42 SNSPYLSQAALNDI----HSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNI 209
SN Y+ + +D+ D + L EW +L DRD LR +F G++K+ L N+
Sbjct: 917 SNERYMRRVFTDDVIKEMTDSSDAIQELESEWDRLVSDRDNLR-TIFPNGDSKVVLPCNL 975
Query: 210 ERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDG 389
+R+IWN ++IF + + +DLSP +++R V+ LL R ++T ++
Sbjct: 976 QRMIWNVQKIFHINKRLPTDLSPMRVIRGVKGLLERCVIVTGND---------------- 1019
Query: 390 SASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
+S+ A NATLLFQ +R++L +K V E RL+ +AF W
Sbjct: 1020 -----------RISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEW 1059
[65][TOP]
>UniRef100_B4L732 DNA-directed RNA polymerase n=1 Tax=Drosophila mojavensis
RepID=B4L732_DROMO
Length = 1889
Score = 89.7 bits (221), Expect = 1e-16
Identities = 54/171 (31%), Positives = 88/171 (51%), Gaps = 4/171 (2%)
Frame = +3
Query: 42 SNSPYLSQAALNDI----HSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNI 209
SN Y+ + +D+ D + L EW +L DRD LR +F G++K+ L N+
Sbjct: 917 SNERYMRKVFTDDVIKEMTDSSDAIQELESEWDRLVSDRDNLR-TIFPNGDSKVVLPCNL 975
Query: 210 ERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDG 389
+R+IWN ++IF + + +DLSP +++R V+ LL R ++T ++
Sbjct: 976 QRMIWNVQKIFHINKRLPTDLSPMRVIRGVKGLLERCVIVTGND---------------- 1019
Query: 390 SASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
+S+ A NATLLFQ +R++L +K V E RL+ +AF W
Sbjct: 1020 -----------RISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEW 1059
[66][TOP]
>UniRef100_A9QMG3 RNA polymerase 2 (Fragment) n=1 Tax=Choriorhabditis cristata
RepID=A9QMG3_9BILA
Length = 270
Score = 89.7 bits (221), Expect = 1e-16
Identities = 49/163 (30%), Positives = 86/163 (52%)
Frame = +3
Query: 54 YLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAK 233
+ + + ++ + + +EW QL++DR LR ++F TG+AK+ L N++RLIWNA+
Sbjct: 123 HYKEEVVRELQGSSEALTEIEEEWRQLEEDRRLLR-KIFPTGDAKIVLPCNLQRLIWNAQ 181
Query: 234 RIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDE 413
+IF V +DL+P +++ V+ L + ++ S ED
Sbjct: 182 KIFHVHMRQTTDLNPVRVIEGVK-ELSKKLIIVSGED----------------------- 217
Query: 414 ALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
+S+ AQ NATLL + +R++L SK + + H+L +AF W
Sbjct: 218 ---RISKQAQYNATLLMNILIRSTLCSKKMATSHKLNAEAFEW 257
[67][TOP]
>UniRef100_Q1ACT1 RNA polymerase II largest subunit (Fragment) n=1 Tax=Quercus
coccinea RepID=Q1ACT1_9ROSI
Length = 240
Score = 89.4 bits (220), Expect = 2e-16
Identities = 56/169 (33%), Positives = 85/169 (50%)
Frame = +3
Query: 36 ESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIER 215
E N Y+ Q + D+ + + + E +L+ DR L E+ TG+ PL VN++R
Sbjct: 74 EHWNPDYMMQEHIEDLKTIREFRNVFDAEVQKLEADRFQLGTEIATTGDNTWPLPVNLKR 133
Query: 216 LIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSA 395
LIWNA++IF + SD+ P +IV V+ L R +V+ ++
Sbjct: 134 LIWNAQKIFKIDNRRHSDMHPMEIVEAVDKLQERLKVVPGED------------------ 175
Query: 396 SGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
LS AQ NATL F + +R++ ASK VL E++LTR+AF W
Sbjct: 176 ---------LLSVEAQKNATLFFNILLRSTFASKRVLEEYKLTREAFEW 215
[68][TOP]
>UniRef100_A9TK89 DNA-directed RNA polymerase n=1 Tax=Physcomitrella patens subsp.
patens RepID=A9TK89_PHYPA
Length = 1646
Score = 89.4 bits (220), Expect = 2e-16
Identities = 56/149 (37%), Positives = 79/149 (53%)
Frame = +3
Query: 96 DVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLS 275
D + E ++L+ DR + E+ TGEA PL VN++RLIWNA++IF V SD+
Sbjct: 930 DYINVFDAEVSKLEADRRQMGLEIAPTGEANWPLPVNLKRLIWNAQKIFKVDFRKPSDMH 989
Query: 276 PSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNAT 455
P +IV V+ L R RV+ D+ ++S AQ NAT
Sbjct: 990 PMEIVEAVDKLQERLRVVPGDD---------------------------QISMEAQRNAT 1022
Query: 456 LLFQVHVRASLASKVVLSEHRLTRKAFTW 542
L F +R++LASK VL ++RLTR+AF W
Sbjct: 1023 LFFGCLLRSTLASKRVLKDYRLTREAFDW 1051
[69][TOP]
>UniRef100_B3MQ29 DNA-directed RNA polymerase n=1 Tax=Drosophila ananassae
RepID=B3MQ29_DROAN
Length = 1889
Score = 89.4 bits (220), Expect = 2e-16
Identities = 53/171 (30%), Positives = 89/171 (52%), Gaps = 4/171 (2%)
Frame = +3
Query: 42 SNSPYLSQAALNDI----HSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNI 209
SN Y+ + +D+ D + L EW +L DRD LR ++F G++K+ L N+
Sbjct: 917 SNERYMRKVFTDDVIKEMTDSSDAIQELEAEWDRLVTDRDSLR-QIFPNGDSKVVLPCNL 975
Query: 210 ERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDG 389
+R+IWN ++IF + + +DLSP ++++ V+ LL R ++T ++
Sbjct: 976 QRMIWNVQKIFHINKRLPTDLSPMRVIKGVKGLLERCVIVTGND---------------- 1019
Query: 390 SASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
+S+ A NATLLFQ +R++L +K V E RL+ +AF W
Sbjct: 1020 -----------RISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEW 1059
[70][TOP]
>UniRef100_Q9PTX4 DNA-directed RNA polymerase (Fragment) n=1 Tax=Lethenteron
reissneri RepID=Q9PTX4_LAMRE
Length = 595
Score = 89.0 bits (219), Expect = 2e-16
Identities = 53/162 (32%), Positives = 84/162 (51%)
Frame = +3
Query: 57 LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 236
L + +NDI S + L KE+ +++ DRD LR VF TG++K+ L N+ R+IWNA++
Sbjct: 433 LQEEVVNDIMSNAHIQNELDKEFDRVRSDRDTLR-SVFPTGDSKVVLPCNLMRMIWNAQK 491
Query: 237 IFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEA 416
IF + +D++P +I+ V+ L R ++ ++
Sbjct: 492 IFHINTRQPTDINPLRIIEGVQDLSKRLMIVKGED------------------------- 526
Query: 417 LKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
LS AQ NATLL HVR++L ++ V E RL+ +AF W
Sbjct: 527 --PLSRQAQENATLLLNCHVRSTLCARRVTEEFRLSLQAFEW 566
[71][TOP]
>UniRef100_Q99368 DNA-directed RNA polymerase (Fragment) n=1 Tax=Glycine max
RepID=Q99368_SOYBN
Length = 977
Score = 89.0 bits (219), Expect = 2e-16
Identities = 57/170 (33%), Positives = 88/170 (51%)
Frame = +3
Query: 33 QESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIE 212
+E+ Y+ Q + D+ + + + E +L+ DR L E+ G+ LPL VN++
Sbjct: 113 EENWKPNYMLQEPVEDLKTIREFRNVFEAEVQKLEADRHQLAIEIASNGDNSLPLPVNLK 172
Query: 213 RLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGS 392
RLIWNA++ F V SD+ P +IV ++ L R +V+ EDA
Sbjct: 173 RLIWNAQKTFKVDFRRPSDMHPMEIVEAIDKLQERLKVVPG-EDA--------------- 216
Query: 393 ASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
LS+ AQ NATLLF + +R++ ASK VL E+RL+R++F W
Sbjct: 217 -----------LSQEAQKNATLLFNILLRSTFASKRVLEEYRLSRESFEW 255
[72][TOP]
>UniRef100_Q1ACU1 RNA polymerase II largest subunit (Fragment) n=1 Tax=Hibbertia
scandens RepID=Q1ACU1_9MAGN
Length = 240
Score = 89.0 bits (219), Expect = 2e-16
Identities = 57/169 (33%), Positives = 86/169 (50%)
Frame = +3
Query: 36 ESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIER 215
E+ N Y+ ++D+ + + + E +L+ DR L E+ TG+ P+ VN++R
Sbjct: 74 ENWNPSYMLSEHVDDLKTIREFRNVFDAEVQKLEADRYQLATEIATTGDNSWPMPVNLKR 133
Query: 216 LIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSA 395
LIWNA++ F V SD+ P +IV V+ L R +V+ D+
Sbjct: 134 LIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVVPGDD------------------ 175
Query: 396 SGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
LS AQ NATL F + +R++LASK VL E+RLTR+AF W
Sbjct: 176 ---------FLSMEAQKNATLFFNILLRSTLASKRVLKEYRLTREAFDW 215
[73][TOP]
>UniRef100_Q1ACT2 RNA polymerase II largest subunit (Fragment) n=1 Tax=Nepenthes
ampullaria RepID=Q1ACT2_9CARY
Length = 240
Score = 89.0 bits (219), Expect = 2e-16
Identities = 58/169 (34%), Positives = 84/169 (49%)
Frame = +3
Query: 36 ESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIER 215
E N Y+ + D+ + + + E +L+ DR L E+ TG+ PL VN+ R
Sbjct: 74 EDWNPNYMLPDHVEDLKTIREFRNVFDAEVQKLEADRFQLATEIATTGDNSWPLPVNLTR 133
Query: 216 LIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSA 395
LIWNA++ F + RSD+ P +IV V+ L R +V+ D+
Sbjct: 134 LIWNAQKTFKIDLRRRSDMHPMEIVEAVDKLQERLKVVPGDD------------------ 175
Query: 396 SGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
LS AQ NATL F + +R++LASK VL E+RLTR+AF W
Sbjct: 176 ---------FLSIEAQKNATLFFNILLRSTLASKRVLQEYRLTREAFDW 215
[74][TOP]
>UniRef100_Q1ACS8 RNA polymerase II largest subunit (Fragment) n=1 Tax=Sedum burrito
RepID=Q1ACS8_9MAGN
Length = 240
Score = 89.0 bits (219), Expect = 2e-16
Identities = 55/166 (33%), Positives = 85/166 (51%)
Frame = +3
Query: 45 NSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIW 224
N Y+ + D+ + + + E +L+ DR L E+ TG+ LP+ VN++RLIW
Sbjct: 77 NPSYMLPEHVEDLKTIREFRNVFDAEVQKLEADRYQLGTEIATTGDNSLPMPVNLKRLIW 136
Query: 225 NAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGP 404
NA++ F V SD+ P +IV ++ L + +V+ ++
Sbjct: 137 NAQKTFKVDSRRPSDMHPMEIVEAIDKLQEKLKVVPGED--------------------- 175
Query: 405 QDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
LS AQ NATLLF + +R++ ASK VLSE+RLTR+AF W
Sbjct: 176 ------SLSIEAQKNATLLFNILLRSTFASKRVLSEYRLTREAFEW 215
[75][TOP]
>UniRef100_C5Y387 DNA-directed RNA polymerase n=1 Tax=Sorghum bicolor
RepID=C5Y387_SORBI
Length = 1874
Score = 89.0 bits (219), Expect = 2e-16
Identities = 58/163 (35%), Positives = 83/163 (50%)
Frame = +3
Query: 54 YLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAK 233
YL +D+ + + +L E +L+ DR L E+ G PL VN++RLIWNA+
Sbjct: 928 YLLPVHFDDLKTISEFRSVLEAEVHKLEADRFQLGTEIATNGSHTWPLPVNLKRLIWNAQ 987
Query: 234 RIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDE 413
+ F + SD+ P +IV ++ L R +V+ D DAI+ E
Sbjct: 988 KTFKIDIRTCSDMHPIEIVEAIDKLQERLKVVPGD-----DAISIE-------------- 1028
Query: 414 ALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
AQ NATL F +H+RA+ ASK VL E+RLTR+AF W
Sbjct: 1029 --------AQKNATLFFNIHLRATFASKRVLREYRLTREAFEW 1063
[76][TOP]
>UniRef100_A9QMP5 DNA-directed RNA polymerase (Fragment) n=1 Tax=Oscheius insectivora
RepID=A9QMP5_9BILA
Length = 474
Score = 89.0 bits (219), Expect = 2e-16
Identities = 49/157 (31%), Positives = 84/157 (53%)
Frame = +3
Query: 72 LNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVR 251
+ D+ V E + KEW QL++DR LR ++F TG+AK+ L N++RLIWNA++IF V
Sbjct: 137 IRDLQGDSQVMEEVEKEWDQLEEDRRLLR-KIFPTGDAKIVLPCNLQRLIWNAQKIFHVE 195
Query: 252 QNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELS 431
+ L+P ++++ V L + ++ D+ +S
Sbjct: 196 TRQPTSLNPLRVIQGVRELSEKLVIVCGDD---------------------------RIS 228
Query: 432 ETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
+ AQ NATLL + +R++L SK + + ++L ++AF W
Sbjct: 229 KQAQYNATLLMNILLRSTLCSKKMATTYKLNQEAFEW 265
[77][TOP]
>UniRef100_P18616 DNA-directed RNA polymerase II subunit RPB1 n=1 Tax=Arabidopsis
thaliana RepID=RPB1_ARATH
Length = 1840
Score = 89.0 bits (219), Expect = 2e-16
Identities = 57/169 (33%), Positives = 87/169 (51%)
Frame = +3
Query: 36 ESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIER 215
E+ N YLS L D+ ++ ++ E+++L+ DR L E+ G++ PL VNI+R
Sbjct: 924 ENWNPTYLSDEHLEDLKGIRELRDVFDAEYSKLETDRFQLGTEIATNGDSTWPLPVNIKR 983
Query: 216 LIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSA 395
IWNA++ F + SD+ P +IV V+ L R V+ D+
Sbjct: 984 HIWNAQKTFKIDLRKISDMHPVEIVDAVDKLQERLLVVPGDD------------------ 1025
Query: 396 SGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
LS AQ NATL F + +R++LASK VL E++L+R+AF W
Sbjct: 1026 ---------ALSVEAQKNATLFFNILLRSTLASKRVLEEYKLSREAFEW 1065
[78][TOP]
>UniRef100_UPI0000E12351 Os05g0151000 n=1 Tax=Oryza sativa Japonica Group RepID=UPI0000E12351
Length = 2085
Score = 88.6 bits (218), Expect = 3e-16
Identities = 52/163 (31%), Positives = 83/163 (50%)
Frame = +3
Query: 54 YLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAK 233
YLS D+ + ++ + E +L+ DR L E+ TG+ P+ VN++RLIWNA+
Sbjct: 929 YLSTQHAEDLKTISEIRNVFEAEVQKLEADRFQLGTEIATTGDNTWPMPVNLKRLIWNAQ 988
Query: 234 RIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDE 413
+ F + SD+ P +IV ++ L R +V+ D+D ++
Sbjct: 989 KTFKIDLRRPSDMHPMEIVDAIDKLQERLKVVPGDDDISIE------------------- 1029
Query: 414 ALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
AQ NATL F + +R++ ASK VL E+RLT++AF W
Sbjct: 1030 --------AQKNATLFFNILLRSTFASKRVLKEYRLTKEAFEW 1064
[79][TOP]
>UniRef100_Q5WMZ9 DNA-directed RNA polymerase n=1 Tax=Oryza sativa Japonica Group
RepID=Q5WMZ9_ORYSJ
Length = 1741
Score = 88.6 bits (218), Expect = 3e-16
Identities = 52/163 (31%), Positives = 83/163 (50%)
Frame = +3
Query: 54 YLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAK 233
YLS D+ + ++ + E +L+ DR L E+ TG+ P+ VN++RLIWNA+
Sbjct: 876 YLSTQHAEDLKTISEIRNVFEAEVQKLEADRFQLGTEIATTGDNTWPMPVNLKRLIWNAQ 935
Query: 234 RIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDE 413
+ F + SD+ P +IV ++ L R +V+ D+D ++
Sbjct: 936 KTFKIDLRRPSDMHPMEIVDAIDKLQERLKVVPGDDDISIE------------------- 976
Query: 414 ALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
AQ NATL F + +R++ ASK VL E+RLT++AF W
Sbjct: 977 --------AQKNATLFFNILLRSTFASKRVLKEYRLTKEAFEW 1011
[80][TOP]
>UniRef100_Q30BD9 DNA-directed RNA polymerase n=1 Tax=Glaucocystis nostochinearum
RepID=Q30BD9_9EUKA
Length = 1852
Score = 88.6 bits (218), Expect = 3e-16
Identities = 59/163 (36%), Positives = 80/163 (49%)
Frame = +3
Query: 54 YLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAK 233
++ + I D LL E+ QL DR LR + T E PL VN++RLIWNA+
Sbjct: 920 FMDADIVQKIRDSADDRILLEAEFKQLMNDRTALRESI-PTDENTWPLPVNLKRLIWNAQ 978
Query: 234 RIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDE 413
+IF + SDL P I++ V LL + V+ ++
Sbjct: 979 KIFHIDVRKPSDLDPVDIIKGVNLLTKQLVVIPGED------------------------ 1014
Query: 414 ALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
LS AQ NAT+LFQ+ VR+ LASK VL+E+RLT AF W
Sbjct: 1015 ---PLSVEAQANATMLFQILVRSCLASKRVLTEYRLTSHAFEW 1054
[81][TOP]
>UniRef100_Q2TUN8 DNA-directed RNA polymerase (Fragment) n=1 Tax=Taxus canadensis
RepID=Q2TUN8_TAXCA
Length = 1013
Score = 88.6 bits (218), Expect = 3e-16
Identities = 52/170 (30%), Positives = 86/170 (50%)
Frame = +3
Query: 33 QESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIE 212
QE+ N Y+ ++D+ + + + E +L+ DR L E+ TG+ P+ VN++
Sbjct: 843 QENWNPSYMLPEHVDDLKTIREFQNVFDAELQKLESDRRQLGTEIATTGDNSWPMPVNLK 902
Query: 213 RLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGS 392
RLIWNA++ F + RSD+ P +IV ++ L R +V+ D+ ++
Sbjct: 903 RLIWNAQKTFKIDPRKRSDMHPMEIVEAIDKLQERLKVVPGDDLMSIE------------ 950
Query: 393 ASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
AQ NATL F + +R++ ASK VL E+ LT++AF W
Sbjct: 951 ---------------AQKNATLFFNILLRSTFASKRVLKEYHLTKEAFEW 985
[82][TOP]
>UniRef100_Q1ACU6 RNA polymerase II largest subunit (Fragment) n=1 Tax=Dillenia
suffruticosa RepID=Q1ACU6_9MAGN
Length = 240
Score = 88.6 bits (218), Expect = 3e-16
Identities = 57/169 (33%), Positives = 85/169 (50%)
Frame = +3
Query: 36 ESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIER 215
E+ N Y+ + D+ + + + E +L+ DR L E+ TG+ P+ VN++R
Sbjct: 74 ENWNPSYMLPEHVEDLKTIREFRNVFDAEVQKLEADRCQLATEIATTGDNSWPMPVNLKR 133
Query: 216 LIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSA 395
LIWNA++ F V SD+ P +IV V+ L R +V+ D+
Sbjct: 134 LIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVVPGDD------------------ 175
Query: 396 SGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
LS AQ NATL F + +R++LASK VL E+RLTR+AF W
Sbjct: 176 ---------FLSTEAQKNATLFFNILLRSTLASKRVLKEYRLTREAFDW 215
[83][TOP]
>UniRef100_Q1ACU3 RNA polymerase II largest subunit (Fragment) n=1 Tax=Hibbertia
cuneiformis RepID=Q1ACU3_9MAGN
Length = 240
Score = 88.6 bits (218), Expect = 3e-16
Identities = 56/169 (33%), Positives = 86/169 (50%)
Frame = +3
Query: 36 ESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIER 215
E+ N Y+ ++D+ + + + E +L+ DR L E+ TG+ P+ VN++R
Sbjct: 74 ENWNPSYMLSEHVDDLKTIREFRNVFDAEVQKLEADRYQLATEIATTGDNSWPMPVNLKR 133
Query: 216 LIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSA 395
L+WNA++ F V SD+ P +IV V+ L R +V+ D+
Sbjct: 134 LVWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVVPGDD------------------ 175
Query: 396 SGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
LS AQ NATL F + +R++LASK VL E+RLTR+AF W
Sbjct: 176 ---------FLSMEAQKNATLFFNILLRSTLASKRVLKEYRLTREAFDW 215
[84][TOP]
>UniRef100_Q1ACS7 RNA polymerase II largest subunit (Fragment) n=1 Tax=Sedum burrito
RepID=Q1ACS7_9MAGN
Length = 240
Score = 88.6 bits (218), Expect = 3e-16
Identities = 56/166 (33%), Positives = 84/166 (50%)
Frame = +3
Query: 45 NSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIW 224
N Y+ + D+ + + + E +L+ DR L E+ TG+ LP+ VN++RLIW
Sbjct: 77 NPNYMLSEHVEDLKTIREFRNVFDAEVQKLEADRYQLGTEIATTGDNSLPMPVNLKRLIW 136
Query: 225 NAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGP 404
NA++ F V SD+ P +IV ++ L R +V+ +
Sbjct: 137 NAQKTFKVDSRRPSDMHPMEIVEAIDKLQERLKVVPGAD--------------------- 175
Query: 405 QDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
LS AQ NATLLF + +R++ ASK VLSE+RLTR+AF W
Sbjct: 176 ------SLSIEAQKNATLLFNILLRSTFASKRVLSEYRLTREAFEW 215
[85][TOP]
>UniRef100_Q0DKN9 DNA-directed RNA polymerase n=1 Tax=Oryza sativa Japonica Group
RepID=Q0DKN9_ORYSJ
Length = 1834
Score = 88.6 bits (218), Expect = 3e-16
Identities = 52/163 (31%), Positives = 83/163 (50%)
Frame = +3
Query: 54 YLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAK 233
YLS D+ + ++ + E +L+ DR L E+ TG+ P+ VN++RLIWNA+
Sbjct: 929 YLSTQHAEDLKTISEIRNVFEAEVQKLEADRFQLGTEIATTGDNTWPMPVNLKRLIWNAQ 988
Query: 234 RIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDE 413
+ F + SD+ P +IV ++ L R +V+ D+D ++
Sbjct: 989 KTFKIDLRRPSDMHPMEIVDAIDKLQERLKVVPGDDDISIE------------------- 1029
Query: 414 ALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
AQ NATL F + +R++ ASK VL E+RLT++AF W
Sbjct: 1030 --------AQKNATLFFNILLRSTFASKRVLKEYRLTKEAFEW 1064
[86][TOP]
>UniRef100_B7SNX1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Nicotiana tabacum
RepID=B7SNX1_TOBAC
Length = 1010
Score = 88.6 bits (218), Expect = 3e-16
Identities = 56/166 (33%), Positives = 85/166 (51%)
Frame = +3
Query: 45 NSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIW 224
N Y+ A+ D+ + ++ + E +L+ DR L E+ TG+ PL VNI+RL+
Sbjct: 844 NPSYMLPEAIEDLKTIREIRSVFDAEVQKLQADRKQLGTEIAVTGDNSWPLPVNIQRLVL 903
Query: 225 NAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGP 404
NA++ F + RSD+ P +IV V+ L R +V+ D+
Sbjct: 904 NAQKTFKIDFRRRSDMHPMEIVEAVDKLQERLKVVPGDD--------------------- 942
Query: 405 QDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
LS AQ NATL F + +R++LASK VL E+RL+R+AF W
Sbjct: 943 ------YLSMEAQKNATLFFNILLRSALASKRVLKEYRLSREAFDW 982
[87][TOP]
>UniRef100_Q9BNE0 DNA-directed RNA polymerase (Fragment) n=1 Tax=Hadrurus arizonensis
RepID=Q9BNE0_HADAR
Length = 543
Score = 88.6 bits (218), Expect = 3e-16
Identities = 59/173 (34%), Positives = 90/173 (52%), Gaps = 4/173 (2%)
Frame = +3
Query: 36 ESSNSPYLSQAALNDI--HSGGDVTEL--LAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 203
+ SN YL + D+ G T L L +EW +L+KDR LR +F TG++K+ L
Sbjct: 383 DPSNERYLRRIFTEDVVRELMGSATALSELEREWERLEKDRRVLR-SIFPTGDSKVVLPC 441
Query: 204 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPP 383
N++R+IWNA++IF V +DLSP ++V+ VE L+ + V+ ++
Sbjct: 442 NLQRMIWNAQKIFHVNLRSATDLSPLRVVQGVEELVKKLVVVPGED-------------- 487
Query: 384 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
LS A NATLLF+ +R++L +K V E RL+ +AF W
Sbjct: 488 -------------RLSIQANENATLLFRALLRSTLCTKRVAEEFRLSSEAFEW 527
[88][TOP]
>UniRef100_Q6GYH6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Prodontorhabditis
wirthi RepID=Q6GYH6_9BILA
Length = 630
Score = 88.6 bits (218), Expect = 3e-16
Identities = 51/169 (30%), Positives = 87/169 (51%)
Frame = +3
Query: 36 ESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIER 215
E + Y ++ + D+ S + + EWAQL++DR LR ++F TG AK+ L N++R
Sbjct: 138 EKALKKYYTEDVVRDLVSSTEAFREVEAEWAQLEEDRQLLR-KIFPTGNAKIVLPCNLQR 196
Query: 216 LIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSA 395
LIWNA++IF V + L+P K+++ V L + ++ ++
Sbjct: 197 LIWNAQKIFHVEMRKPTTLNPMKVIQGVRELSKKLIIVNGED------------------ 238
Query: 396 SGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
+S+ AQ NATLL + +R++L SK + S ++L +AF W
Sbjct: 239 ---------RISKQAQYNATLLTNILIRSTLCSKKMASTYKLDSEAFDW 278
[89][TOP]
>UniRef100_Q1WKU2 Putative RNA polymerase II 215 kD subunit (Fragment) n=1
Tax=Drosophila simulans RepID=Q1WKU2_DROSI
Length = 746
Score = 88.6 bits (218), Expect = 3e-16
Identities = 49/157 (31%), Positives = 84/157 (53%)
Frame = +3
Query: 72 LNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVR 251
+ ++ + + L EW +L DRD LR ++F GE+K+ L N++R+IWN ++IF +
Sbjct: 73 IKEMTDSSEAIQELEAEWDRLVSDRDSLR-QIFPNGESKVVLPCNLQRMIWNVQKIFHIN 131
Query: 252 QNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELS 431
+ +DLSP ++++ V+ LL R ++T ++ +S
Sbjct: 132 KRLPTDLSPIRVIKGVKTLLERCVIVTGND---------------------------RIS 164
Query: 432 ETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
+ A NATLLFQ +R++L +K V E RL+ +AF W
Sbjct: 165 KQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEW 201
[90][TOP]
>UniRef100_O01364 DNA-directed RNA polymerase (Fragment) n=1 Tax=Cruznema tripartitum
RepID=O01364_9BILA
Length = 633
Score = 88.6 bits (218), Expect = 3e-16
Identities = 50/163 (30%), Positives = 86/163 (52%)
Frame = +3
Query: 54 YLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAK 233
+ ++ + D+ + + EWAQL++DR LR ++F TG+AK+ L N++RL+WNA+
Sbjct: 138 FYTEDVVRDLQGSSEALREVESEWAQLEEDRRLLR-KIFPTGDAKIVLPCNLKRLLWNAQ 196
Query: 234 RIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDE 413
+IF V +DL+P +++ V L + V+ ED
Sbjct: 197 KIFHVEMRKPTDLNPLRVIEGVR-ELSKKLVIVGGED----------------------- 232
Query: 414 ALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
+S+ AQ NATLL + +R++L SK + S ++L ++AF W
Sbjct: 233 ---RISKQAQYNATLLMNILLRSTLCSKQMASHYKLNQEAFDW 272
[91][TOP]
>UniRef100_B4IK28 DNA-directed RNA polymerase n=1 Tax=Drosophila sechellia
RepID=B4IK28_DROSE
Length = 1887
Score = 88.6 bits (218), Expect = 3e-16
Identities = 49/157 (31%), Positives = 84/157 (53%)
Frame = +3
Query: 72 LNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVR 251
+ ++ + + L EW +L DRD LR ++F GE+K+ L N++R+IWN ++IF +
Sbjct: 931 IKEMTDSSEAIQELEAEWDRLVSDRDSLR-QIFPNGESKVVLPCNLQRMIWNVQKIFHIN 989
Query: 252 QNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELS 431
+ +DLSP ++++ V+ LL R ++T ++ +S
Sbjct: 990 KRLPTDLSPIRVIKGVKTLLERCVIVTGND---------------------------RIS 1022
Query: 432 ETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
+ A NATLLFQ +R++L +K V E RL+ +AF W
Sbjct: 1023 KQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEW 1059
[92][TOP]
>UniRef100_A9UNH9 DNA-directed RNA polymerase n=1 Tax=Drosophila melanogaster
RepID=A9UNH9_DROME
Length = 1887
Score = 88.6 bits (218), Expect = 3e-16
Identities = 49/157 (31%), Positives = 84/157 (53%)
Frame = +3
Query: 72 LNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVR 251
+ ++ + + L EW +L DRD LR ++F GE+K+ L N++R+IWN ++IF +
Sbjct: 931 IKEMTDSSEAIQELEAEWDRLVSDRDSLR-QIFPNGESKVVLPCNLQRMIWNVQKIFHIN 989
Query: 252 QNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELS 431
+ +DLSP ++++ V+ LL R ++T ++ +S
Sbjct: 990 KRLPTDLSPIRVIKGVKTLLERCVIVTGND---------------------------RIS 1022
Query: 432 ETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
+ A NATLLFQ +R++L +K V E RL+ +AF W
Sbjct: 1023 KQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEW 1059
[93][TOP]
>UniRef100_A9UEE2 DNA-directed RNA polymerase (Fragment) n=1 Tax=Cephaloboides cf.
armata SB363 RepID=A9UEE2_9BILA
Length = 475
Score = 88.6 bits (218), Expect = 3e-16
Identities = 51/141 (36%), Positives = 78/141 (55%)
Frame = +3
Query: 120 EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRXV 299
EWAQL++DR LR ++F TG+AK+ L N++RLIWNA++IF V +DL+P +++ +
Sbjct: 154 EWAQLEEDRRLLR-KIFPTGDAKIVLPCNLQRLIWNAQKIFHVETRKPTDLNPLRVIEGI 212
Query: 300 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 479
L + V+ S ED +S+ AQ NATLL + +R
Sbjct: 213 RELSTKL-VIVSGED--------------------------RISQQAQYNATLLMNILIR 245
Query: 480 ASLASKVVLSEHRLTRKAFTW 542
++L SK + S H+L +AF W
Sbjct: 246 STLCSKKMASTHKLNSEAFEW 266
[94][TOP]
>UniRef100_A9QMQ5 DNA-directed RNA polymerase (Fragment) n=1 Tax=Cruznema tripartitum
RepID=A9QMQ5_9BILA
Length = 276
Score = 88.6 bits (218), Expect = 3e-16
Identities = 50/163 (30%), Positives = 86/163 (52%)
Frame = +3
Query: 54 YLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAK 233
+ ++ + D+ + + EWAQL++DR LR ++F TG+AK+ L N++RL+WNA+
Sbjct: 131 FYTEDVVRDLQGSSEALREVESEWAQLEEDRRLLR-KIFPTGDAKIVLPCNLKRLLWNAQ 189
Query: 234 RIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDE 413
+IF V +DL+P +++ V L + V+ ED
Sbjct: 190 KIFHVEMRKPTDLNPLRVIEGVR-ELSKKLVIVGGED----------------------- 225
Query: 414 ALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
+S+ AQ NATLL + +R++L SK + S ++L ++AF W
Sbjct: 226 ---RISKQAQYNATLLMNILLRSTLCSKQMASHYKLNQEAFDW 265
[95][TOP]
>UniRef100_A9QMH3 DNA-directed RNA polymerase (Fragment) n=1 Tax=Rhabditis sp. PS1130
RepID=A9QMH3_9BILA
Length = 619
Score = 88.6 bits (218), Expect = 3e-16
Identities = 54/181 (29%), Positives = 94/181 (51%), Gaps = 3/181 (1%)
Frame = +3
Query: 9 LTEPDLHLQ---ESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTG 179
L E D L E + Y ++ + ++ + + + +EW QL++DR LR ++F +G
Sbjct: 116 LFEQDFKLDLSDERTLRKYYTEDVIRELQGSSEAIKEVEQEWGQLEEDRRLLR-KIFPSG 174
Query: 180 EAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDA 359
AK+ L N++RL+WNA++IF V +DL+P +++ V L + ++ S ED
Sbjct: 175 NAKIVLPCNLQRLLWNAQKIFHVETRKPTDLNPLRVIEGVR-ELSKKLIIVSGED----- 228
Query: 360 IAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFT 539
++S+ AQ NATLL + VR++L SK + S+++L +AF
Sbjct: 229 ---------------------KISKQAQYNATLLMNILVRSTLCSKKMASKYKLNSEAFE 267
Query: 540 W 542
W
Sbjct: 268 W 268
[96][TOP]
>UniRef100_A9QMG1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Oscheius
dolichuroides RepID=A9QMG1_9BILA
Length = 629
Score = 88.6 bits (218), Expect = 3e-16
Identities = 49/157 (31%), Positives = 83/157 (52%)
Frame = +3
Query: 72 LNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVR 251
+ D+ D E + EWAQL++DR LR +++ TGE+K L N++RLIWNA++IF V
Sbjct: 151 IRDLQGSPDAIEEVENEWAQLEEDRRLLR-KIYATGESKCVLPCNLQRLIWNAQKIFHVE 209
Query: 252 QNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELS 431
+ + L+P ++R V L + ++ D+ +S
Sbjct: 210 KREPVCLNPLNVIRGVRSLSEKLIIVGGDD---------------------------RIS 242
Query: 432 ETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
+ AQ NATLL + +R++L +K + + H+L ++AF W
Sbjct: 243 KQAQYNATLLMNILLRSTLCAKKMATTHKLNQEAFEW 279
[97][TOP]
>UniRef100_A9QME1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Rhabditis brassicae
RepID=A9QME1_9BILA
Length = 628
Score = 88.6 bits (218), Expect = 3e-16
Identities = 54/181 (29%), Positives = 92/181 (50%), Gaps = 3/181 (1%)
Frame = +3
Query: 9 LTEPDLHLQ---ESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTG 179
L E D L E + Y ++ + ++ + + + +EW QL++DR LR ++F G
Sbjct: 117 LFEKDFKLDLSDEKTLRKYYTEDVIRELQGSSEAIKEVEQEWGQLEEDRRLLR-KIFPNG 175
Query: 180 EAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDA 359
AK+ L N++RL+WNA++IF V +DL+P +++ V L + ++ S ED
Sbjct: 176 NAKIVLPCNLQRLLWNAQKIFHVETRKPTDLNPLRVIEGVRELSQKL-IIVSGED----- 229
Query: 360 IAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFT 539
+S+ AQ NATLL + VR++L SK + S+++L +AF
Sbjct: 230 ---------------------RISKQAQYNATLLMNILVRSTLCSKKMASKYKLNSEAFE 268
Query: 540 W 542
W
Sbjct: 269 W 269
[98][TOP]
>UniRef100_P04052 DNA-directed RNA polymerase II subunit RPB1 n=2 Tax=Drosophila
melanogaster RepID=RPB1_DROME
Length = 1887
Score = 88.6 bits (218), Expect = 3e-16
Identities = 49/157 (31%), Positives = 84/157 (53%)
Frame = +3
Query: 72 LNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVR 251
+ ++ + + L EW +L DRD LR ++F GE+K+ L N++R+IWN ++IF +
Sbjct: 931 IKEMTDSSEAIQELEAEWDRLVSDRDSLR-QIFPNGESKVVLPCNLQRMIWNVQKIFHIN 989
Query: 252 QNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELS 431
+ +DLSP ++++ V+ LL R ++T ++ +S
Sbjct: 990 KRLPTDLSPIRVIKGVKTLLERCVIVTGND---------------------------RIS 1022
Query: 432 ETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
+ A NATLLFQ +R++L +K V E RL+ +AF W
Sbjct: 1023 KQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEW 1059
[99][TOP]
>UniRef100_Q1ACU5 RNA polymerase II largest subunit (Fragment) n=1 Tax=Dionaea
muscipula RepID=Q1ACU5_DIOMU
Length = 240
Score = 88.2 bits (217), Expect = 3e-16
Identities = 55/166 (33%), Positives = 84/166 (50%)
Frame = +3
Query: 45 NSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIW 224
N Y+ + D+ S + ++ E ++L+ DR L ++ TG+ PL VN+ RLI
Sbjct: 77 NPKYIRPDYIEDLKSIPEFHDVFEAEISKLESDRLLLATQIATTGDNSWPLPVNLARLIQ 136
Query: 225 NAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGP 404
NA+++F + SDL P +IV V+ L R RV+ D+
Sbjct: 137 NAQKLFKIDTRGTSDLMPMEIVEAVDKLQERLRVVPGDD--------------------- 175
Query: 405 QDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
LS+ AQ NATL F + +R++LA K VL E+RL+R+AF W
Sbjct: 176 ------HLSDEAQRNATLFFNILLRSTLACKRVLQEYRLSREAFEW 215
[100][TOP]
>UniRef100_Q1ACU2 RNA polymerase II largest subunit (Fragment) n=1 Tax=Hibbertia
aspera RepID=Q1ACU2_9MAGN
Length = 240
Score = 88.2 bits (217), Expect = 3e-16
Identities = 57/169 (33%), Positives = 85/169 (50%)
Frame = +3
Query: 36 ESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIER 215
E+ N Y+ + D+ + + + E +L+ DR L E+ TG+ P+ VN++R
Sbjct: 74 ENWNPSYMLPEHVEDLKTIREFRNVFDAEVQKLEADRFQLATEIATTGDNSWPMPVNLKR 133
Query: 216 LIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSA 395
LIWNA++ F V SD+ P +IV V+ L R +V+ D+
Sbjct: 134 LIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVVPGDD------------------ 175
Query: 396 SGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
LS AQ NATL F + +R++LASK VL E+RLTR+AF W
Sbjct: 176 ---------FLSMEAQKNATLFFNILLRSTLASKRVLKEYRLTREAFDW 215
[101][TOP]
>UniRef100_Q1ACS6 RNA polymerase II largest subunit (Fragment) n=1 Tax=Senecio
picticaulis RepID=Q1ACS6_9ASTR
Length = 240
Score = 88.2 bits (217), Expect = 3e-16
Identities = 58/169 (34%), Positives = 85/169 (50%)
Frame = +3
Query: 36 ESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIER 215
E+ N Y+ + D+ + + + E +L+ DR L E+ TG+ P+ VN++R
Sbjct: 74 ENWNPSYMIPDHVEDLKTIREFRNVFDAEVQKLEADRIQLGTEIATTGDNSWPMPVNLKR 133
Query: 216 LIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSA 395
LIWNA++ F V SD+ P +IV V+ L R RV+ D+
Sbjct: 134 LIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLRVVPGDD------------------ 175
Query: 396 SGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
LS AQ NATL F + +R++ ASK VLSE+RLTR+AF W
Sbjct: 176 ---------LLSIEAQKNATLFFNILLRSTFASKRVLSEYRLTREAFDW 215
[102][TOP]
>UniRef100_Q9XZU8 DNA-directed RNA polymerase (Fragment) n=1 Tax=Drosophila
pseudoobscura pseudoobscura RepID=Q9XZU8_DROPS
Length = 1811
Score = 88.2 bits (217), Expect = 3e-16
Identities = 51/171 (29%), Positives = 88/171 (51%), Gaps = 4/171 (2%)
Frame = +3
Query: 42 SNSPYLSQA----ALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNI 209
SN Y+ + + ++ + + L EW L +DRD LR ++F G++K+ L N+
Sbjct: 839 SNERYMRKVFTDEVIKEMTDSSEAIQDLESEWDHLMQDRDHLR-QIFPNGDSKVVLPCNL 897
Query: 210 ERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDG 389
+R+IWN ++IF + + +DLSP ++++ V+ LL R ++T +
Sbjct: 898 QRMIWNVQKIFHINKRLPTDLSPMRVIKGVKTLLERCVIVTGAD---------------- 941
Query: 390 SASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
+S+ A NATLLFQ +R++L +K V E RL+ +AF W
Sbjct: 942 -----------RISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEW 981
[103][TOP]
>UniRef100_Q29IN2 DNA-directed RNA polymerase n=1 Tax=Drosophila pseudoobscura
pseudoobscura RepID=Q29IN2_DROPS
Length = 1889
Score = 88.2 bits (217), Expect = 3e-16
Identities = 51/171 (29%), Positives = 88/171 (51%), Gaps = 4/171 (2%)
Frame = +3
Query: 42 SNSPYLSQA----ALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNI 209
SN Y+ + + ++ + + L EW L +DRD LR ++F G++K+ L N+
Sbjct: 917 SNERYMRKVFTDEVIKEMTDSSEAIQDLESEWDHLMQDRDHLR-QIFPNGDSKVVLPCNL 975
Query: 210 ERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDG 389
+R+IWN ++IF + + +DLSP ++++ V+ LL R ++T +
Sbjct: 976 QRMIWNVQKIFHINKRLPTDLSPMRVIKGVKTLLERCVIVTGAD---------------- 1019
Query: 390 SASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
+S+ A NATLLFQ +R++L +K V E RL+ +AF W
Sbjct: 1020 -----------RISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEW 1059
[104][TOP]
>UniRef100_B4H2R8 DNA-directed RNA polymerase n=1 Tax=Drosophila persimilis
RepID=B4H2R8_DROPE
Length = 1804
Score = 88.2 bits (217), Expect = 3e-16
Identities = 51/171 (29%), Positives = 88/171 (51%), Gaps = 4/171 (2%)
Frame = +3
Query: 42 SNSPYLSQA----ALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNI 209
SN Y+ + + ++ + + L EW L +DRD LR ++F G++K+ L N+
Sbjct: 917 SNERYMRKVFTDEVIKEMTDSSEAIQDLESEWDHLMQDRDHLR-QIFPNGDSKVVLPCNL 975
Query: 210 ERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDG 389
+R+IWN ++IF + + +DLSP ++++ V+ LL R ++T +
Sbjct: 976 QRMIWNVQKIFHINKRLPTDLSPMRVIKGVKTLLERCVIVTGAD---------------- 1019
Query: 390 SASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
+S+ A NATLLFQ +R++L +K V E RL+ +AF W
Sbjct: 1020 -----------RISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEW 1059
[105][TOP]
>UniRef100_B0XAQ9 DNA-directed RNA polymerase n=1 Tax=Culex quinquefasciatus
RepID=B0XAQ9_CULQU
Length = 1874
Score = 88.2 bits (217), Expect = 3e-16
Identities = 50/161 (31%), Positives = 85/161 (52%)
Frame = +3
Query: 60 SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRI 239
++ + ++ GDV + + E+ QL +DR+ LR ++F G++K+ L N++R+IWN ++I
Sbjct: 925 NEEVIKELTESGDVIQEIEAEYEQLLRDREALR-QIFPNGDSKVVLPCNLQRMIWNVQKI 983
Query: 240 FDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEAL 419
F + + +DLSP K+++ V LL + ++ +
Sbjct: 984 FHINKRAPTDLSPLKVIQGVRDLLQKCVIVAGTD-------------------------- 1017
Query: 420 KELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
LS+ A NATLLFQ VR++L +K V E RL +AF W
Sbjct: 1018 -RLSKQANENATLLFQCLVRSTLCTKYVAEEFRLINEAFEW 1057
[106][TOP]
>UniRef100_A8BDP1 RNA polymerase II largest subunit (Fragment) n=1 Tax=Paragordius
varius RepID=A8BDP1_PARVA
Length = 467
Score = 88.2 bits (217), Expect = 3e-16
Identities = 52/174 (29%), Positives = 91/174 (52%)
Frame = +3
Query: 21 DLHLQESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLA 200
DL+L E + YL++ + D+ + L +EW ++K+D+ LR ++F TG++K+ L
Sbjct: 62 DLNLNERTLKRYLNEDIVKDLIANTHCLTELEREWERIKEDQTLLR-QIFPTGDSKVVLP 120
Query: 201 VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLP 380
N++R+IWNA++IF + SDL P K+VR V+ L + V+
Sbjct: 121 CNLQRIIWNAQKIFRINPRLPSDLHPLKVVRGVQELSEKLIVV----------------- 163
Query: 381 PDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
+ + +S+ AQL+AT L +R++L ++ V E +L+ AF W
Sbjct: 164 ----------KGVDRISQRAQLDATFLMNALIRSTLCTRRVAEEFKLSSDAFDW 207
[107][TOP]
>UniRef100_Q9BNE5 RNA polymerase II largest subunit (Fragment) n=1 Tax=Branchia sp.
'Ere' RepID=Q9BNE5_9ARAC
Length = 232
Score = 87.8 bits (216), Expect = 4e-16
Identities = 53/173 (30%), Positives = 91/173 (52%), Gaps = 4/173 (2%)
Frame = +3
Query: 36 ESSNSPYL----SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 203
++SN Y+ ++ + ++ L KEW +LKKDR+ LR +F TG++K+ +
Sbjct: 72 DASNERYMHRIFTEEVVRELMGSAMALSELEKEWERLKKDREVLR-TIFPTGDSKVVMPC 130
Query: 204 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPP 383
N++R+IWNA++IF V ++DLSP + ++ VE L+ + ++ ++
Sbjct: 131 NLQRMIWNAQKIFHVNTRSQTDLSPLRTIKGVEDLVKKLVIVPGED-------------- 176
Query: 384 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
LS A NATLLF+ +R++L +K V E RL+ +AF W
Sbjct: 177 -------------RLSIQANDNATLLFRALLRSTLCTKRVSDEFRLSTEAFDW 216
[108][TOP]
>UniRef100_O02452 DNA-directed RNA polymerase (Fragment) n=1 Tax=Mastigoproctus
giganteus RepID=O02452_MASGI
Length = 887
Score = 87.8 bits (216), Expect = 4e-16
Identities = 53/161 (32%), Positives = 84/161 (52%)
Frame = +3
Query: 60 SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRI 239
++ + D+ L KEW +LKKDR+ LR VF TG++K+ L N++R+IWNA++I
Sbjct: 574 TEDVVRDLLGSATALSELEKEWERLKKDREVLR-TVFPTGDSKVVLPCNLQRMIWNAQKI 632
Query: 240 FDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEAL 419
F V +DLSP +++ VE L+ + ++ ++
Sbjct: 633 FRVNARAPTDLSPFRVIHGVEDLVKKLIIVPGED-------------------------- 666
Query: 420 KELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
LS A NATLLF+ +R++L +K V E RL+ +AF W
Sbjct: 667 -RLSIQANENATLLFRALLRSTLCTKRVAEEFRLSSEAFEW 706
[109][TOP]
>UniRef100_B4NDK9 DNA-directed RNA polymerase n=1 Tax=Drosophila willistoni
RepID=B4NDK9_DROWI
Length = 1890
Score = 87.8 bits (216), Expect = 4e-16
Identities = 50/157 (31%), Positives = 83/157 (52%)
Frame = +3
Query: 72 LNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVR 251
+ ++ D + L EW +L DRD LR ++F G++K+ L N++R+IWN ++IF +
Sbjct: 931 IKEMTDSSDAIQELESEWDRLVVDRDSLR-QIFPNGDSKVVLPCNLQRMIWNVQKIFHIN 989
Query: 252 QNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELS 431
+ +DLSP ++++ V LL R ++T ++ +S
Sbjct: 990 KRLPTDLSPMRVIKGVRGLLERCVIVTGND---------------------------RIS 1022
Query: 432 ETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
+ A NATLLFQ VR++L +K V E RL+ +AF W
Sbjct: 1023 KQANENATLLFQCLVRSTLCTKYVSEEFRLSTEAFEW 1059
[110][TOP]
>UniRef100_A9QMS7 DNA-directed RNA polymerase (Fragment) n=1 Tax=Cuticonema vivipara
RepID=A9QMS7_9BILA
Length = 407
Score = 87.8 bits (216), Expect = 4e-16
Identities = 50/157 (31%), Positives = 86/157 (54%)
Frame = +3
Query: 72 LNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVR 251
+ ++ + + + + +EW QL+ DR LR ++F TG+A + L N++R++WNA++IF V
Sbjct: 148 IRELQNSPEALQAVEEEWIQLESDRRLLR-KIFPTGKAGVVLPCNLDRMMWNARKIFHVE 206
Query: 252 QNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELS 431
+DLSP K+++ V+ L R V+ S ED ++S
Sbjct: 207 TRKPTDLSPLKVIQGVKDLTSRL-VIVSGED--------------------------KIS 239
Query: 432 ETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
+ AQ NATLL + +R++L SK + +H+L +AF W
Sbjct: 240 QQAQYNATLLMNILLRSTLCSKRLAEKHKLNTEAFEW 276
[111][TOP]
>UniRef100_A9QMF8 DNA-directed RNA polymerase (Fragment) n=1 Tax=Rhabditis sp. SB347
RepID=A9QMF8_9BILA
Length = 621
Score = 87.8 bits (216), Expect = 4e-16
Identities = 52/169 (30%), Positives = 86/169 (50%)
Frame = +3
Query: 36 ESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIER 215
E S ++ + ++ D + EW QL++DR LR ++F TG+AK+ L N++R
Sbjct: 136 EKSLRTLYTEDVVRELQGSSDALKEAEAEWGQLEEDRRLLR-KIFPTGDAKIVLPCNLQR 194
Query: 216 LIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSA 395
LIWNA++IF V +DL+P +++ V L + ++ S ED
Sbjct: 195 LIWNAQKIFHVETRKPTDLNPIRVIEGVRELSSKL-IIVSGED----------------- 236
Query: 396 SGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
+S+ AQ NATLL + +R++L SK + S ++L +AF W
Sbjct: 237 ---------RISKQAQYNATLLMNILIRSTLCSKKMASTYKLNSEAFEW 276
[112][TOP]
>UniRef100_Q1WKU4 Putative RNA polymerase II 215 kD subunit (Fragment) n=1
Tax=Drosophila erecta RepID=Q1WKU4_DROER
Length = 760
Score = 87.4 bits (215), Expect = 6e-16
Identities = 52/171 (30%), Positives = 89/171 (52%), Gaps = 4/171 (2%)
Frame = +3
Query: 42 SNSPYLSQAALNDI----HSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNI 209
SN Y+ + +D+ + + L EW +L DRD LR ++F G++K+ L N+
Sbjct: 59 SNERYMRKVFTDDVIKEMTDSSEAIQELEAEWDRLVGDRDSLR-QIFPNGDSKVVLPCNL 117
Query: 210 ERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDG 389
+R+IWN ++IF + + +DLSP ++++ V+ LL R ++T ++
Sbjct: 118 QRMIWNVQKIFHINKRLPTDLSPMRVIKGVKGLLERCVIVTGND---------------- 161
Query: 390 SASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
+S+ A NATLLFQ +R++L +K V E RL+ +AF W
Sbjct: 162 -----------RISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEW 201
[113][TOP]
>UniRef100_Q1WKU0 Putative RNA polymerase II 215 kD subunit (Fragment) n=2
Tax=melanogaster subgroup RepID=Q1WKU0_DROYA
Length = 766
Score = 87.4 bits (215), Expect = 6e-16
Identities = 52/171 (30%), Positives = 89/171 (52%), Gaps = 4/171 (2%)
Frame = +3
Query: 42 SNSPYLSQAALNDI----HSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNI 209
SN Y+ + +D+ + + L EW +L DRD LR ++F G++K+ L N+
Sbjct: 59 SNERYMRKVFTDDVIKEMTDSSEAIQELEAEWDRLVGDRDSLR-QIFPNGDSKVVLPCNL 117
Query: 210 ERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDG 389
+R+IWN ++IF + + +DLSP ++++ V+ LL R ++T ++
Sbjct: 118 QRMIWNVQKIFHINKRLPTDLSPMRVIKGVKGLLERCVIVTGND---------------- 161
Query: 390 SASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
+S+ A NATLLFQ +R++L +K V E RL+ +AF W
Sbjct: 162 -----------RISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEW 201
[114][TOP]
>UniRef100_O02450 DNA-directed RNA polymerase (Fragment) n=1 Tax=Limulus polyphemus
RepID=O02450_LIMPO
Length = 778
Score = 87.4 bits (215), Expect = 6e-16
Identities = 58/172 (33%), Positives = 90/172 (52%), Gaps = 4/172 (2%)
Frame = +3
Query: 39 SSNSPYLSQAALNDIHSG--GDVTEL--LAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVN 206
+SN YL + D+ G T L L KEW +LK DR+ LR +F TG++K+ L N
Sbjct: 454 ASNERYLRRIFTEDVVRDLMGSATALSELEKEWEKLKHDRELLR-AIFPTGDSKVVLPCN 512
Query: 207 IERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPD 386
++R+IW+A++IF V Q +DLSP K++ VE L+ + V+ ++
Sbjct: 513 LQRMIWSAQKIFHVNQRAPTDLSPLKVIGGVEELVKKLVVVPGED--------------- 557
Query: 387 GSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
LS A NAT+LF+ +R++L +K V E RL+ ++F W
Sbjct: 558 ------------RLSIQANDNATILFRALLRSTLCAKRVAEEFRLSSESFQW 597
[115][TOP]
>UniRef100_B4PY98 DNA-directed RNA polymerase n=1 Tax=Drosophila yakuba
RepID=B4PY98_DROYA
Length = 1889
Score = 87.4 bits (215), Expect = 6e-16
Identities = 52/171 (30%), Positives = 89/171 (52%), Gaps = 4/171 (2%)
Frame = +3
Query: 42 SNSPYLSQAALNDI----HSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNI 209
SN Y+ + +D+ + + L EW +L DRD LR ++F G++K+ L N+
Sbjct: 917 SNERYMRKVFTDDVIKEMTDSSEAIQELEAEWDRLVGDRDSLR-QIFPNGDSKVVLPCNL 975
Query: 210 ERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDG 389
+R+IWN ++IF + + +DLSP ++++ V+ LL R ++T ++
Sbjct: 976 QRMIWNVQKIFHINKRLPTDLSPMRVIKGVKGLLERCVIVTGND---------------- 1019
Query: 390 SASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
+S+ A NATLLFQ +R++L +K V E RL+ +AF W
Sbjct: 1020 -----------RISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEW 1059
[116][TOP]
>UniRef100_B4JXA6 DNA-directed RNA polymerase n=1 Tax=Drosophila grimshawi
RepID=B4JXA6_DROGR
Length = 1889
Score = 87.4 bits (215), Expect = 6e-16
Identities = 56/172 (32%), Positives = 90/172 (52%), Gaps = 5/172 (2%)
Frame = +3
Query: 42 SNSPYLSQAALNDI-----HSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVN 206
SN Y+ + +D+ S + EL A EW L DRD LR +F+ G++K+ L N
Sbjct: 917 SNERYMRKVFADDVIKEITESSVAIQELEA-EWDHLVTDRDNLR-TIFRNGDSKVVLPCN 974
Query: 207 IERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPD 386
++R+IWN ++IF + + +DLSP +++R V LL+R ++T ++
Sbjct: 975 LQRMIWNVQKIFHINKRLPTDLSPMRVIRGVSDLLNRCVIVTGND--------------- 1019
Query: 387 GSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
+S+ A NATLLFQ +R++L +K V E RL+ +AF W
Sbjct: 1020 ------------RISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEW 1059
[117][TOP]
>UniRef100_B3NUC1 DNA-directed RNA polymerase n=1 Tax=Drosophila erecta
RepID=B3NUC1_DROER
Length = 1889
Score = 87.4 bits (215), Expect = 6e-16
Identities = 52/171 (30%), Positives = 89/171 (52%), Gaps = 4/171 (2%)
Frame = +3
Query: 42 SNSPYLSQAALNDI----HSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNI 209
SN Y+ + +D+ + + L EW +L DRD LR ++F G++K+ L N+
Sbjct: 917 SNERYMRKVFTDDVIKEMTDSSEAIQELEAEWDRLVGDRDSLR-QIFPNGDSKVVLPCNL 975
Query: 210 ERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDG 389
+R+IWN ++IF + + +DLSP ++++ V+ LL R ++T ++
Sbjct: 976 QRMIWNVQKIFHINKRLPTDLSPMRVIKGVKGLLERCVIVTGND---------------- 1019
Query: 390 SASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
+S+ A NATLLFQ +R++L +K V E RL+ +AF W
Sbjct: 1020 -----------RISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEW 1059
[118][TOP]
>UniRef100_A9YGC1 RNA polymerase II 215 kD subunit (Fragment) n=2 Tax=melanogaster
subgroup RepID=A9YGC1_DROME
Length = 247
Score = 87.4 bits (215), Expect = 6e-16
Identities = 49/144 (34%), Positives = 79/144 (54%)
Frame = +3
Query: 111 LAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIV 290
L EW +L DRD LR ++F GE+K+ L N++R+IWN ++IF + + +DLSP +++
Sbjct: 1 LEAEWDRLVSDRDSLR-QIFPNGESKVVLPCNLQRMIWNVQKIFHINKRLPTDLSPIRVI 59
Query: 291 RXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQV 470
+ V+ LL R ++T ++ +S+ A NATLLFQ
Sbjct: 60 KGVKTLLERCVIVTGND---------------------------RISKQANENATLLFQC 92
Query: 471 HVRASLASKVVLSEHRLTRKAFTW 542
+R++L +K V E RL+ +AF W
Sbjct: 93 LIRSTLCTKYVSEEFRLSTEAFEW 116
[119][TOP]
>UniRef100_Q6CBQ3 DNA-directed RNA polymerase n=1 Tax=Yarrowia lipolytica
RepID=Q6CBQ3_YARLI
Length = 1750
Score = 87.4 bits (215), Expect = 6e-16
Identities = 56/156 (35%), Positives = 80/156 (51%)
Frame = +3
Query: 75 NDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQ 254
NDI +V +L +E+ QL DR LR EVF G+ PL VNI R++ N++RIF+V +
Sbjct: 920 NDIVGDVEVQRVLDEEYNQLLTDRRLLREEVFTNGDHNWPLPVNIRRVVQNSQRIFNVDK 979
Query: 255 NDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSE 434
+ SDL+ +IV V+ L R ++ D L++
Sbjct: 980 SKVSDLTIPEIVEGVQSLCKRLTIVRGD---------------------------SSLAK 1012
Query: 435 TAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
AQ NAT+LFQ VR+ +K V+ E+RL R AF W
Sbjct: 1013 EAQENATMLFQCLVRSRFPTKRVIEEYRLNRAAFEW 1048
[120][TOP]
>UniRef100_Q71ET4 DNA-directed RNA polymerase (Fragment) n=1 Tax=Amborella trichopoda
RepID=Q71ET4_AMBTC
Length = 1013
Score = 87.0 bits (214), Expect = 8e-16
Identities = 54/170 (31%), Positives = 86/170 (50%)
Frame = +3
Query: 33 QESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIE 212
QE+ + Y+ + D+ + + + E +L+ DR L E+ TG+ P+ VN++
Sbjct: 843 QENWSPSYMLPEHVEDLKTIREFQNVFDAEVQKLEADRHQLGTEITTTGDNSWPMPVNLK 902
Query: 213 RLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGS 392
RLIWNA+++F V SD+ P +IV V+ L R +V+ D+ ++
Sbjct: 903 RLIWNAQKMFKVDLRRPSDMHPMEIVEAVDKLQERLKVVPGDDLMSIE------------ 950
Query: 393 ASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
AQ NATL F + +R++ ASK VL E+RLTR+AF W
Sbjct: 951 ---------------AQKNATLFFNILLRSTFASKRVLKEYRLTREAFDW 985
[121][TOP]
>UniRef100_Q2TUN9 DNA-directed RNA polymerase (Fragment) n=1 Tax=Thuja occidentalis
RepID=Q2TUN9_THUOC
Length = 1013
Score = 87.0 bits (214), Expect = 8e-16
Identities = 51/170 (30%), Positives = 86/170 (50%)
Frame = +3
Query: 33 QESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIE 212
QE+ N Y+ ++D+ + + + E +L+ DR L E+ +G+ P+ VN++
Sbjct: 843 QENWNPSYMLPEHVDDLKTIREFQNVFDAELQKLESDRRQLGTEIAPSGDNSWPMPVNLK 902
Query: 213 RLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGS 392
RLIWNA++ F + RSD+ P +IV ++ L R +V+ D+ ++
Sbjct: 903 RLIWNAQKTFKIDPRKRSDMHPMEIVEAIDKLQERLKVVPGDDLISIE------------ 950
Query: 393 ASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
AQ NATL F + +R++ ASK VL E+ LT++AF W
Sbjct: 951 ---------------AQKNATLFFNILLRSTFASKRVLKEYHLTKEAFEW 985
[122][TOP]
>UniRef100_Q9NJM1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Hanseniella sp.
'Han' RepID=Q9NJM1_9MYRI
Length = 468
Score = 87.0 bits (214), Expect = 8e-16
Identities = 50/161 (31%), Positives = 82/161 (50%)
Frame = +3
Query: 60 SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRI 239
++ + D+ V L KEW L+KDR LR E+F G++K+ L N++R+IWNA++I
Sbjct: 320 TEDVVKDLIGSAQVLSELEKEWELLQKDRKSLR-EIFPKGDSKVVLPCNLQRMIWNAQKI 378
Query: 240 FDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEAL 419
F + Q +DL+P +++ V L + ++ ++
Sbjct: 379 FHINQRSATDLNPVRVIEGVRELTKKIVIVVGED-------------------------- 412
Query: 420 KELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
+S+ A NATLLF +R++L +K V E RLT +AF W
Sbjct: 413 -RISKQANENATLLFNCLLRSTLCTKRVAEEFRLTTEAFEW 452
[123][TOP]
>UniRef100_Q1WKU3 Putative RNA polymerase II 215 kD subunit (Fragment) n=1
Tax=Drosophila orena RepID=Q1WKU3_DROOR
Length = 750
Score = 87.0 bits (214), Expect = 8e-16
Identities = 52/171 (30%), Positives = 88/171 (51%), Gaps = 4/171 (2%)
Frame = +3
Query: 42 SNSPYLSQAALNDI----HSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNI 209
SN Y+ + +D+ + + L EW L DRD LR ++F G++K+ L N+
Sbjct: 59 SNERYMRKVFTDDVIKEMTDSSEAIQELEAEWDHLVGDRDSLR-QIFPNGDSKVVLPCNL 117
Query: 210 ERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDG 389
+R+IWN ++IF + + +DLSP ++++ V+ LL R ++T ++
Sbjct: 118 QRMIWNVQKIFHINKRLPTDLSPMRVIKGVKGLLERCVIVTGND---------------- 161
Query: 390 SASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
+S+ A NATLLFQ +R++L +K V E RL+ +AF W
Sbjct: 162 -----------RISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEW 201
[124][TOP]
>UniRef100_A9QMP3 DNA-directed RNA polymerase (Fragment) n=1 Tax=Rhabditis brassicae
RepID=A9QMP3_9BILA
Length = 406
Score = 87.0 bits (214), Expect = 8e-16
Identities = 51/181 (28%), Positives = 91/181 (50%), Gaps = 3/181 (1%)
Frame = +3
Query: 9 LTEPDLHLQ---ESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTG 179
L E D L E + Y ++ + ++ + + + +EW QL++DR LR ++F G
Sbjct: 124 LFEKDFKLDLSDEKTLRKYYTEDVIRELQGSSEAIKEVEQEWGQLEEDRRLLR-KIFPNG 182
Query: 180 EAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDA 359
AK+ L N++RL+WNA++IF V +DL+P +++ V L + +++ +
Sbjct: 183 NAKIVLPCNLQRLLWNAQKIFHVETRKPTDLNPLRVIEGVRELSQKLIIVSGE------- 235
Query: 360 IAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFT 539
+S+ AQ NATLL + VR++L SK + S+++L +AF
Sbjct: 236 --------------------NRISKQAQYNATLLMNILVRSTLCSKKMASKYKLNSEAFE 275
Query: 540 W 542
W
Sbjct: 276 W 276
[125][TOP]
>UniRef100_Q1ACV1 RNA polymerase II largest subunit (Fragment) n=1 Tax=Berberidopsis
beckleri RepID=Q1ACV1_9MAGN
Length = 240
Score = 86.7 bits (213), Expect = 1e-15
Identities = 57/169 (33%), Positives = 84/169 (49%)
Frame = +3
Query: 36 ESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIER 215
ES N Y+ + D+ + + + E +L+ DR L E+ TG+ P+ VN++R
Sbjct: 74 ESWNPGYMLPEHVEDLKTIREFRNVFDAEVQKLEADRFQLGTEIATTGDNTWPMPVNLKR 133
Query: 216 LIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSA 395
LIWNA++ F V SD+ P +IV V+ L R +V+ D+
Sbjct: 134 LIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVVPGDD------------------ 175
Query: 396 SGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
LS AQ NATL F + +R++ ASK VL E+RLTR+AF W
Sbjct: 176 ---------FLSMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFEW 215
[126][TOP]
>UniRef100_Q6E228 DNA-directed RNA polymerase (Fragment) n=1 Tax=Rhabditella axei
RepID=Q6E228_9BILA
Length = 621
Score = 86.7 bits (213), Expect = 1e-15
Identities = 49/169 (28%), Positives = 89/169 (52%)
Frame = +3
Query: 36 ESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIER 215
E + + ++ + D+ + + + EW QL++DR LR ++F TG+AK+ L N++R
Sbjct: 136 EKTLRKFYTEEVVRDLQGSTEAMKEVESEWHQLEEDRRLLR-KIFPTGDAKIVLPCNLQR 194
Query: 216 LIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSA 395
LIWNA++IF V +DL+P +++ ++ L + ++ S ED
Sbjct: 195 LIWNAQKIFHVETRKPTDLNPLRVIDGIKELSSKL-IIVSGED----------------- 236
Query: 396 SGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
+S+ AQ NATLL + +R++L SK + S ++L ++F W
Sbjct: 237 ---------RISQQAQYNATLLMNILIRSTLCSKKMASTYKLNAESFEW 276
[127][TOP]
>UniRef100_A9QMG9 DNA-directed RNA polymerase (Fragment) n=1 Tax=Poikilolaimus
regenfussi RepID=A9QMG9_9BILA
Length = 620
Score = 86.7 bits (213), Expect = 1e-15
Identities = 47/141 (33%), Positives = 78/141 (55%)
Frame = +3
Query: 120 EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRXV 299
EWAQL++DR LR ++F G+AK+ L N++RLIWNA+++F V +++L+P +++ V
Sbjct: 156 EWAQLEEDRRLLR-KIFPKGDAKVVLPCNLQRLIWNAQKVFHVETRKQTELNPLRVIEGV 214
Query: 300 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 479
L + ++ D+ +S+ AQ NATLL + +R
Sbjct: 215 RELSKKLVIVGGDD---------------------------RISKQAQFNATLLMNILLR 247
Query: 480 ASLASKVVLSEHRLTRKAFTW 542
++L SK V +HRL ++AF W
Sbjct: 248 STLCSKQVAEKHRLNQEAFEW 268
[128][TOP]
>UniRef100_A9QMG4 RNA polymerase 2 (Fragment) n=1 Tax=Pelodera strongyloides
dermatitica RepID=A9QMG4_9PELO
Length = 478
Score = 86.7 bits (213), Expect = 1e-15
Identities = 49/161 (30%), Positives = 82/161 (50%)
Frame = +3
Query: 60 SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRI 239
++ + D+ + + + EW QL++DR LR ++F G+ K+ L N++RLIWNA++I
Sbjct: 126 TEDVVRDLLGSSNALQEVEAEWQQLEEDRRLLR-KIFPKGDHKVVLPCNLQRLIWNAQKI 184
Query: 240 FDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEAL 419
F V S L+P K+V V+ L H+ ++ D+
Sbjct: 185 FKVETRKPSSLNPLKVVSGVKELSHKLVIVCGDD-------------------------- 218
Query: 420 KELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
+S+ AQ NATLL + +R++L SK + +HRL + F W
Sbjct: 219 -RISKQAQYNATLLMNILIRSTLCSKQMAEKHRLNEEGFEW 258
[129][TOP]
>UniRef100_A9QMF0 DNA-directed RNA polymerase (Fragment) n=1 Tax=Pelodera
strongyloides dermatitica RepID=A9QMF0_9PELO
Length = 633
Score = 86.7 bits (213), Expect = 1e-15
Identities = 49/161 (30%), Positives = 82/161 (50%)
Frame = +3
Query: 60 SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRI 239
++ + D+ + + + EW QL++DR LR ++F G+ K+ L N++RLIWNA++I
Sbjct: 145 TEDVVRDLLGSSNALQEVEAEWQQLEEDRRLLR-KIFPKGDHKVVLPCNLQRLIWNAQKI 203
Query: 240 FDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEAL 419
F V S L+P K+V V+ L H+ ++ D+
Sbjct: 204 FKVETRKPSSLNPLKVVSGVKELSHKLVIVCGDD-------------------------- 237
Query: 420 KELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
+S+ AQ NATLL + +R++L SK + +HRL + F W
Sbjct: 238 -RISKQAQYNATLLMNILIRSTLCSKQMAEKHRLNEEGFEW 277
[130][TOP]
>UniRef100_B4E3V7 DNA-directed RNA polymerase n=1 Tax=Homo sapiens RepID=B4E3V7_HUMAN
Length = 1935
Score = 86.7 bits (213), Expect = 1e-15
Identities = 51/162 (31%), Positives = 85/162 (52%)
Frame = +3
Query: 57 LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 236
L + + D+ S + L +E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++
Sbjct: 899 LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 957
Query: 237 IFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEA 416
IF + SDL P K+V V+ L + ++ D+
Sbjct: 958 IFHINPRLPSDLHPIKVVEGVKKLSKKLVIVNGDD------------------------- 992
Query: 417 LKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
LS AQ NATLLF +H+R++L S+ + E RL+ +AF W
Sbjct: 993 --PLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDW 1032
[131][TOP]
>UniRef100_Q2PYR1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Spiromyces aspiralis
RepID=Q2PYR1_9FUNG
Length = 1022
Score = 86.7 bits (213), Expect = 1e-15
Identities = 57/170 (33%), Positives = 86/170 (50%)
Frame = +3
Query: 33 QESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIE 212
++S S L + L ++ +V +L E+ QLK+DR LR + + GEA+ P+ VN+
Sbjct: 852 EKSFPSGTLEFSVLKNVEGNDEVQRVLDDEYEQLKEDRHILRKFIARDGEARRPMPVNLP 911
Query: 213 RLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGS 392
RLI NA++IF + S+LSP +IV + L VL + D++ RE
Sbjct: 912 RLIKNAQQIFHIDHRKPSNLSPVEIVEKIRKLADSLIVLRGN-----DSLTRE------- 959
Query: 393 ASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
AQ NATLLFQ+++R++ SK VL E+ L A W
Sbjct: 960 ---------------AQQNATLLFQIYLRSTFPSKRVLQEYHLNSNALDW 994
[132][TOP]
>UniRef100_UPI0001796DD3 PREDICTED: similar to DNA-directed RNA polymerase II subunit RPB1
(RNA polymerase II subunit B1) (DNA-directed RNA
polymerase II subunit A) (DNA-directed RNA polymerase III
largest subunit) n=1 Tax=Equus caballus
RepID=UPI0001796DD3
Length = 1834
Score = 86.3 bits (212), Expect = 1e-15
Identities = 51/162 (31%), Positives = 85/162 (52%)
Frame = +3
Query: 57 LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 236
L + + D+ S + L +E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++
Sbjct: 934 LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 992
Query: 237 IFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEA 416
IF + SDL P K+V V+ L + ++ D+
Sbjct: 993 IFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDD------------------------- 1027
Query: 417 LKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
LS AQ NATLLF +H+R++L S+ + E RL+ +AF W
Sbjct: 1028 --PLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDW 1067
[133][TOP]
>UniRef100_UPI0000EBDCD2 PREDICTED: polymerase (RNA) II (DNA directed) polypeptide A, 220kDa
isoform 4 n=1 Tax=Bos taurus RepID=UPI0000EBDCD2
Length = 1970
Score = 86.3 bits (212), Expect = 1e-15
Identities = 51/162 (31%), Positives = 85/162 (52%)
Frame = +3
Query: 57 LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 236
L + + D+ S + L +E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++
Sbjct: 934 LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 992
Query: 237 IFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEA 416
IF + SDL P K+V V+ L + ++ D+
Sbjct: 993 IFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDD------------------------- 1027
Query: 417 LKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
LS AQ NATLLF +H+R++L S+ + E RL+ +AF W
Sbjct: 1028 --PLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDW 1067
[134][TOP]
>UniRef100_UPI0000E24648 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
(RPB1) n=1 Tax=Pan troglodytes RepID=UPI0000E24648
Length = 1913
Score = 86.3 bits (212), Expect = 1e-15
Identities = 51/162 (31%), Positives = 85/162 (52%)
Frame = +3
Query: 57 LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 236
L + + D+ S + L +E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++
Sbjct: 934 LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 992
Query: 237 IFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEA 416
IF + SDL P K+V V+ L + ++ D+
Sbjct: 993 IFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDD------------------------- 1027
Query: 417 LKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
LS AQ NATLLF +H+R++L S+ + E RL+ +AF W
Sbjct: 1028 --PLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDW 1067
[135][TOP]
>UniRef100_UPI0000D9E16B PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
(RPB1) n=1 Tax=Macaca mulatta RepID=UPI0000D9E16B
Length = 1193
Score = 86.3 bits (212), Expect = 1e-15
Identities = 51/162 (31%), Positives = 85/162 (52%)
Frame = +3
Query: 57 LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 236
L + + D+ S + L +E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++
Sbjct: 934 LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 992
Query: 237 IFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEA 416
IF + SDL P K+V V+ L + ++ D+
Sbjct: 993 IFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDD------------------------- 1027
Query: 417 LKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
LS AQ NATLLF +H+R++L S+ + E RL+ +AF W
Sbjct: 1028 --PLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDW 1067
[136][TOP]
>UniRef100_UPI00005A0B2C PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
(RPB1) isoform 23 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B2C
Length = 1888
Score = 86.3 bits (212), Expect = 1e-15
Identities = 51/162 (31%), Positives = 85/162 (52%)
Frame = +3
Query: 57 LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 236
L + + D+ S + L +E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++
Sbjct: 934 LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 992
Query: 237 IFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEA 416
IF + SDL P K+V V+ L + ++ D+
Sbjct: 993 IFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDD------------------------- 1027
Query: 417 LKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
LS AQ NATLLF +H+R++L S+ + E RL+ +AF W
Sbjct: 1028 --PLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDW 1067
[137][TOP]
>UniRef100_UPI00005A0B2B PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
(RPB1) isoform 22 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B2B
Length = 1892
Score = 86.3 bits (212), Expect = 1e-15
Identities = 51/162 (31%), Positives = 85/162 (52%)
Frame = +3
Query: 57 LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 236
L + + D+ S + L +E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++
Sbjct: 936 LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 994
Query: 237 IFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEA 416
IF + SDL P K+V V+ L + ++ D+
Sbjct: 995 IFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDD------------------------- 1029
Query: 417 LKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
LS AQ NATLLF +H+R++L S+ + E RL+ +AF W
Sbjct: 1030 --PLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDW 1069
[138][TOP]
>UniRef100_UPI00005A0B2A PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
(RPB1) isoform 21 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B2A
Length = 1896
Score = 86.3 bits (212), Expect = 1e-15
Identities = 51/162 (31%), Positives = 85/162 (52%)
Frame = +3
Query: 57 LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 236
L + + D+ S + L +E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++
Sbjct: 936 LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 994
Query: 237 IFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEA 416
IF + SDL P K+V V+ L + ++ D+
Sbjct: 995 IFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDD------------------------- 1029
Query: 417 LKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
LS AQ NATLLF +H+R++L S+ + E RL+ +AF W
Sbjct: 1030 --PLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDW 1069
[139][TOP]
>UniRef100_UPI00005A0B29 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
(RPB1) isoform 20 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B29
Length = 1891
Score = 86.3 bits (212), Expect = 1e-15
Identities = 51/162 (31%), Positives = 85/162 (52%)
Frame = +3
Query: 57 LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 236
L + + D+ S + L +E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++
Sbjct: 903 LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 961
Query: 237 IFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEA 416
IF + SDL P K+V V+ L + ++ D+
Sbjct: 962 IFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDD------------------------- 996
Query: 417 LKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
LS AQ NATLLF +H+R++L S+ + E RL+ +AF W
Sbjct: 997 --PLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDW 1036
[140][TOP]
>UniRef100_UPI00005A0B28 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
(RPB1) isoform 19 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B28
Length = 1908
Score = 86.3 bits (212), Expect = 1e-15
Identities = 51/162 (31%), Positives = 85/162 (52%)
Frame = +3
Query: 57 LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 236
L + + D+ S + L +E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++
Sbjct: 920 LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 978
Query: 237 IFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEA 416
IF + SDL P K+V V+ L + ++ D+
Sbjct: 979 IFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDD------------------------- 1013
Query: 417 LKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
LS AQ NATLLF +H+R++L S+ + E RL+ +AF W
Sbjct: 1014 --PLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDW 1053
[141][TOP]
>UniRef100_UPI00005A0B27 PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide
A isoform 18 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B27
Length = 1831
Score = 86.3 bits (212), Expect = 1e-15
Identities = 51/162 (31%), Positives = 85/162 (52%)
Frame = +3
Query: 57 LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 236
L + + D+ S + L +E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++
Sbjct: 934 LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 992
Query: 237 IFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEA 416
IF + SDL P K+V V+ L + ++ D+
Sbjct: 993 IFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDD------------------------- 1027
Query: 417 LKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
LS AQ NATLLF +H+R++L S+ + E RL+ +AF W
Sbjct: 1028 --PLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDW 1067
[142][TOP]
>UniRef100_UPI00005A0B26 PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide
A isoform 17 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B26
Length = 1684
Score = 86.3 bits (212), Expect = 1e-15
Identities = 51/162 (31%), Positives = 85/162 (52%)
Frame = +3
Query: 57 LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 236
L + + D+ S + L +E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++
Sbjct: 924 LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 982
Query: 237 IFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEA 416
IF + SDL P K+V V+ L + ++ D+
Sbjct: 983 IFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDD------------------------- 1017
Query: 417 LKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
LS AQ NATLLF +H+R++L S+ + E RL+ +AF W
Sbjct: 1018 --PLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDW 1057
[143][TOP]
>UniRef100_UPI00005A0B25 PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide
A isoform 16 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B25
Length = 1752
Score = 86.3 bits (212), Expect = 1e-15
Identities = 51/162 (31%), Positives = 85/162 (52%)
Frame = +3
Query: 57 LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 236
L + + D+ S + L +E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++
Sbjct: 924 LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 982
Query: 237 IFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEA 416
IF + SDL P K+V V+ L + ++ D+
Sbjct: 983 IFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDD------------------------- 1017
Query: 417 LKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
LS AQ NATLLF +H+R++L S+ + E RL+ +AF W
Sbjct: 1018 --PLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDW 1057
[144][TOP]
>UniRef100_UPI00005A0B24 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
(RPB1) isoform 15 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B24
Length = 1924
Score = 86.3 bits (212), Expect = 1e-15
Identities = 51/162 (31%), Positives = 85/162 (52%)
Frame = +3
Query: 57 LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 236
L + + D+ S + L +E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++
Sbjct: 936 LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 994
Query: 237 IFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEA 416
IF + SDL P K+V V+ L + ++ D+
Sbjct: 995 IFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDD------------------------- 1029
Query: 417 LKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
LS AQ NATLLF +H+R++L S+ + E RL+ +AF W
Sbjct: 1030 --PLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDW 1069
[145][TOP]
>UniRef100_UPI00005A0B23 PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide
A isoform 14 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B23
Length = 1653
Score = 86.3 bits (212), Expect = 1e-15
Identities = 51/162 (31%), Positives = 85/162 (52%)
Frame = +3
Query: 57 LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 236
L + + D+ S + L +E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++
Sbjct: 907 LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 965
Query: 237 IFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEA 416
IF + SDL P K+V V+ L + ++ D+
Sbjct: 966 IFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDD------------------------- 1000
Query: 417 LKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
LS AQ NATLLF +H+R++L S+ + E RL+ +AF W
Sbjct: 1001 --PLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDW 1040
[146][TOP]
>UniRef100_UPI00005A0B22 PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide
A isoform 13 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B22
Length = 1722
Score = 86.3 bits (212), Expect = 1e-15
Identities = 51/162 (31%), Positives = 85/162 (52%)
Frame = +3
Query: 57 LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 236
L + + D+ S + L +E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++
Sbjct: 907 LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 965
Query: 237 IFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEA 416
IF + SDL P K+V V+ L + ++ D+
Sbjct: 966 IFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDD------------------------- 1000
Query: 417 LKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
LS AQ NATLLF +H+R++L S+ + E RL+ +AF W
Sbjct: 1001 --PLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDW 1040
[147][TOP]
>UniRef100_UPI00005A0B21 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
(RPB1) isoform 12 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B21
Length = 1922
Score = 86.3 bits (212), Expect = 1e-15
Identities = 51/162 (31%), Positives = 85/162 (52%)
Frame = +3
Query: 57 LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 236
L + + D+ S + L +E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++
Sbjct: 934 LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 992
Query: 237 IFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEA 416
IF + SDL P K+V V+ L + ++ D+
Sbjct: 993 IFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDD------------------------- 1027
Query: 417 LKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
LS AQ NATLLF +H+R++L S+ + E RL+ +AF W
Sbjct: 1028 --PLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDW 1067
[148][TOP]
>UniRef100_UPI00005A0B20 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
(RPB1) isoform 11 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B20
Length = 1923
Score = 86.3 bits (212), Expect = 1e-15
Identities = 51/162 (31%), Positives = 85/162 (52%)
Frame = +3
Query: 57 LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 236
L + + D+ S + L +E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++
Sbjct: 935 LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 993
Query: 237 IFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEA 416
IF + SDL P K+V V+ L + ++ D+
Sbjct: 994 IFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDD------------------------- 1028
Query: 417 LKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
LS AQ NATLLF +H+R++L S+ + E RL+ +AF W
Sbjct: 1029 --PLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDW 1068
[149][TOP]
>UniRef100_UPI00005A0B1F PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide
A isoform 10 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B1F
Length = 1840
Score = 86.3 bits (212), Expect = 1e-15
Identities = 51/162 (31%), Positives = 85/162 (52%)
Frame = +3
Query: 57 LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 236
L + + D+ S + L +E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++
Sbjct: 930 LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 988
Query: 237 IFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEA 416
IF + SDL P K+V V+ L + ++ D+
Sbjct: 989 IFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDD------------------------- 1023
Query: 417 LKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
LS AQ NATLLF +H+R++L S+ + E RL+ +AF W
Sbjct: 1024 --PLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDW 1063
[150][TOP]
>UniRef100_UPI00005A0B1E PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide
A isoform 9 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B1E
Length = 1851
Score = 86.3 bits (212), Expect = 1e-15
Identities = 51/162 (31%), Positives = 85/162 (52%)
Frame = +3
Query: 57 LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 236
L + + D+ S + L +E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++
Sbjct: 930 LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 988
Query: 237 IFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEA 416
IF + SDL P K+V V+ L + ++ D+
Sbjct: 989 IFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDD------------------------- 1023
Query: 417 LKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
LS AQ NATLLF +H+R++L S+ + E RL+ +AF W
Sbjct: 1024 --PLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDW 1063
[151][TOP]
>UniRef100_UPI00005A0B1D PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
(RPB1) isoform 1 n=2 Tax=Canis lupus familiaris
RepID=UPI00005A0B1D
Length = 1764
Score = 86.3 bits (212), Expect = 1e-15
Identities = 51/162 (31%), Positives = 85/162 (52%)
Frame = +3
Query: 57 LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 236
L + + D+ S + L +E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++
Sbjct: 952 LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 1010
Query: 237 IFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEA 416
IF + SDL P K+V V+ L + ++ D+
Sbjct: 1011 IFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDD------------------------- 1045
Query: 417 LKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
LS AQ NATLLF +H+R++L S+ + E RL+ +AF W
Sbjct: 1046 --PLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDW 1085
[152][TOP]
>UniRef100_UPI00005A0B19 PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide
A isoform 5 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B19
Length = 1693
Score = 86.3 bits (212), Expect = 1e-15
Identities = 51/162 (31%), Positives = 85/162 (52%)
Frame = +3
Query: 57 LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 236
L + + D+ S + L +E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++
Sbjct: 920 LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 978
Query: 237 IFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEA 416
IF + SDL P K+V V+ L + ++ D+
Sbjct: 979 IFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDD------------------------- 1013
Query: 417 LKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
LS AQ NATLLF +H+R++L S+ + E RL+ +AF W
Sbjct: 1014 --PLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDW 1053
[153][TOP]
>UniRef100_UPI00005A0B17 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
(RPB1) isoform 3 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B17
Length = 1788
Score = 86.3 bits (212), Expect = 1e-15
Identities = 51/162 (31%), Positives = 85/162 (52%)
Frame = +3
Query: 57 LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 236
L + + D+ S + L +E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++
Sbjct: 934 LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 992
Query: 237 IFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEA 416
IF + SDL P K+V V+ L + ++ D+
Sbjct: 993 IFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDD------------------------- 1027
Query: 417 LKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
LS AQ NATLLF +H+R++L S+ + E RL+ +AF W
Sbjct: 1028 --PLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDW 1067
[154][TOP]
>UniRef100_UPI00005A0B16 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
(RPB1) isoform 2 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B16
Length = 1922
Score = 86.3 bits (212), Expect = 1e-15
Identities = 51/162 (31%), Positives = 85/162 (52%)
Frame = +3
Query: 57 LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 236
L + + D+ S + L +E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++
Sbjct: 934 LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 992
Query: 237 IFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEA 416
IF + SDL P K+V V+ L + ++ D+
Sbjct: 993 IFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDD------------------------- 1027
Query: 417 LKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
LS AQ NATLLF +H+R++L S+ + E RL+ +AF W
Sbjct: 1028 --PLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDW 1067
[155][TOP]
>UniRef100_UPI0001B7A25C UPI0001B7A25C related cluster n=1 Tax=Rattus norvegicus
RepID=UPI0001B7A25C
Length = 1968
Score = 86.3 bits (212), Expect = 1e-15
Identities = 51/162 (31%), Positives = 85/162 (52%)
Frame = +3
Query: 57 LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 236
L + + D+ S + L +E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++
Sbjct: 936 LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 994
Query: 237 IFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEA 416
IF + SDL P K+V V+ L + ++ D+
Sbjct: 995 IFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDD------------------------- 1029
Query: 417 LKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
LS AQ NATLLF +H+R++L S+ + E RL+ +AF W
Sbjct: 1030 --PLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDW 1069
[156][TOP]
>UniRef100_UPI0001B7A25B UPI0001B7A25B related cluster n=1 Tax=Rattus norvegicus
RepID=UPI0001B7A25B
Length = 1932
Score = 86.3 bits (212), Expect = 1e-15
Identities = 51/162 (31%), Positives = 85/162 (52%)
Frame = +3
Query: 57 LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 236
L + + D+ S + L +E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++
Sbjct: 934 LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 992
Query: 237 IFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEA 416
IF + SDL P K+V V+ L + ++ D+
Sbjct: 993 IFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDD------------------------- 1027
Query: 417 LKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
LS AQ NATLLF +H+R++L S+ + E RL+ +AF W
Sbjct: 1028 --PLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDW 1067
[157][TOP]
>UniRef100_UPI0000DA33D8 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
(RPB1) n=1 Tax=Rattus norvegicus RepID=UPI0000DA33D8
Length = 1970
Score = 86.3 bits (212), Expect = 1e-15
Identities = 51/162 (31%), Positives = 85/162 (52%)
Frame = +3
Query: 57 LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 236
L + + D+ S + L +E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++
Sbjct: 934 LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 992
Query: 237 IFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEA 416
IF + SDL P K+V V+ L + ++ D+
Sbjct: 993 IFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDD------------------------- 1027
Query: 417 LKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
LS AQ NATLLF +H+R++L S+ + E RL+ +AF W
Sbjct: 1028 --PLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDW 1067
[158][TOP]
>UniRef100_UPI0001951285 220 kDa DNA-directed RNA polymerase polypeptide A n=1 Tax=Canis lupus
familiaris RepID=UPI0001951285
Length = 1969
Score = 86.3 bits (212), Expect = 1e-15
Identities = 51/162 (31%), Positives = 85/162 (52%)
Frame = +3
Query: 57 LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 236
L + + D+ S + L +E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++
Sbjct: 934 LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 992
Query: 237 IFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEA 416
IF + SDL P K+V V+ L + ++ D+
Sbjct: 993 IFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDD------------------------- 1027
Query: 417 LKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
LS AQ NATLLF +H+R++L S+ + E RL+ +AF W
Sbjct: 1028 --PLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDW 1067
[159][TOP]
>UniRef100_O08847 DNA-directed RNA polymerase n=1 Tax=Mus musculus RepID=O08847_MOUSE
Length = 1966
Score = 86.3 bits (212), Expect = 1e-15
Identities = 51/162 (31%), Positives = 85/162 (52%)
Frame = +3
Query: 57 LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 236
L + + D+ S + L +E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++
Sbjct: 934 LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 992
Query: 237 IFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEA 416
IF + SDL P K+V V+ L + ++ D+
Sbjct: 993 IFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDD------------------------- 1027
Query: 417 LKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
LS AQ NATLLF +H+R++L S+ + E RL+ +AF W
Sbjct: 1028 --PLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDW 1067
[160][TOP]
>UniRef100_Q1ACV2 RNA polymerase II largest subunit (Fragment) n=1 Tax=Aextoxicon
punctatum RepID=Q1ACV2_9MAGN
Length = 240
Score = 86.3 bits (212), Expect = 1e-15
Identities = 56/169 (33%), Positives = 84/169 (49%)
Frame = +3
Query: 36 ESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIER 215
E+ N Y+ + D+ + + + E +L+ DR L E+ TG+ P+ VN++R
Sbjct: 74 ENWNPSYMLPEHVEDLKTIREFRNVFDAEVQKLEADRFQLGTEIATTGDNTWPMPVNLKR 133
Query: 216 LIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSA 395
LIWNA++ F V SD+ P +IV V+ L R +V+ D+
Sbjct: 134 LIWNAQKTFKVDLRXPSDMHPMEIVEAVDKLQERLKVVPGDD------------------ 175
Query: 396 SGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
LS AQ NATL F + +R++ ASK VL E+RLTR+AF W
Sbjct: 176 ---------FLSMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFEW 215
[161][TOP]
>UniRef100_Q1ACU9 RNA polymerase II largest subunit (Fragment) n=1 Tax=Berberidopsis
corallina RepID=Q1ACU9_9MAGN
Length = 240
Score = 86.3 bits (212), Expect = 1e-15
Identities = 55/169 (32%), Positives = 86/169 (50%)
Frame = +3
Query: 36 ESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIER 215
E+ N Y+ + + + + + + E +L+ DR L E+ TG+ P+ VN++R
Sbjct: 74 ENWNPTYMLPEHVEGLKTILEFSNVFEAEIRKLEADRYQLGTEIATTGDNSWPMPVNLKR 133
Query: 216 LIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSA 395
LIWNA++ F+V SD+ P++IV V+ L R +V+ D+
Sbjct: 134 LIWNAQKTFEVDLRRPSDMHPTEIVEAVDKLQERLKVVPGDD------------------ 175
Query: 396 SGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
LS AQ NATL F + +R++ ASK VL E+RLTR+AF W
Sbjct: 176 ---------LLSTEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFDW 215
[162][TOP]
>UniRef100_Q1ACT3 RNA polymerase II largest subunit (Fragment) n=1 Tax=Nelumbo
nucifera RepID=Q1ACT3_NELNU
Length = 240
Score = 86.3 bits (212), Expect = 1e-15
Identities = 56/169 (33%), Positives = 84/169 (49%)
Frame = +3
Query: 36 ESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIER 215
E+ N Y+ + D+ + + + E +L+ DR L E+ TG+ P+ VN++R
Sbjct: 74 ENWNPSYMLPEHVEDLKTIREFRNVFDAEVQKLEADRYQLGTEIATTGDNNWPMPVNLKR 133
Query: 216 LIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSA 395
LIWNA++ F V SD+ P +IV V+ L R +V+ D+
Sbjct: 134 LIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVVPGDD------------------ 175
Query: 396 SGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
LS AQ NATL F + +R++ ASK VL E+RLTR+AF W
Sbjct: 176 ---------FLSMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFEW 215
[163][TOP]
>UniRef100_O04144 DNA-directed RNA polymerase (Fragment) n=1 Tax=Spirogyra sp.
RepID=O04144_9VIRI
Length = 613
Score = 86.3 bits (212), Expect = 1e-15
Identities = 55/170 (32%), Positives = 86/170 (50%)
Frame = +3
Query: 33 QESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIE 212
QE + Y+ D + +++ E QL++DR L E+ TG++ PL VNI+
Sbjct: 431 QEDWSPDYMDPQFAKDAKIVAEFRQVMDAEVLQLEQDRRTLGLEIAPTGDSSWPLPVNIK 490
Query: 213 RLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGS 392
RLIWNA++IF + SD++P +V ++ L R +V+ D D I+RE
Sbjct: 491 RLIWNAQKIFKIDLRKPSDMNPMDVVDGMDKLQERLKVVVGD-----DHISRE------- 538
Query: 393 ASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
AQ NATL F +R++++SK VL ++RL +AF W
Sbjct: 539 ---------------AQKNATLFFNCLLRSTMSSKQVLKDYRLNMEAFQW 573
[164][TOP]
>UniRef100_Q9XZS2 DNA-directed RNA polymerase n=1 Tax=Drosophila madeirensis
RepID=Q9XZS2_DROMD
Length = 1889
Score = 86.3 bits (212), Expect = 1e-15
Identities = 52/171 (30%), Positives = 86/171 (50%), Gaps = 4/171 (2%)
Frame = +3
Query: 42 SNSPYLSQA----ALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNI 209
SN Y+ + + +I + + L EW L DRD LR +F G++K+ L N+
Sbjct: 917 SNERYMRKVFTDEVIKEITDSSEAIQDLESEWDNLMHDRDNLR-VIFPNGDSKVVLPCNL 975
Query: 210 ERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDG 389
+R+IWN ++IF + + +DLSP ++++ V+ LL R ++T +
Sbjct: 976 QRMIWNVQKIFHINKRLPTDLSPMRVIKGVKTLLERCVIVTGAD---------------- 1019
Query: 390 SASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
+S+ A NATLLFQ +R++L +K V E RL+ +AF W
Sbjct: 1020 -----------RISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEW 1059
[165][TOP]
>UniRef100_B7PJA3 DNA-directed RNA polymerase (Fragment) n=1 Tax=Ixodes scapularis
RepID=B7PJA3_IXOSC
Length = 1937
Score = 86.3 bits (212), Expect = 1e-15
Identities = 51/144 (35%), Positives = 80/144 (55%)
Frame = +3
Query: 111 LAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIV 290
L KEW +LK+DR+ LR +F TG++K+ L N++R++WNA++IF V +DLSP ++V
Sbjct: 952 LEKEWERLKRDREALR-TIFPTGDSKVVLPCNLQRMLWNAQKIFRVNLRSPTDLSPLRVV 1010
Query: 291 RXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQV 470
+ VE L+ + ++ ++ LS A NATLLF+
Sbjct: 1011 QGVEELVKKLVIVPGED---------------------------HLSIQANENATLLFRS 1043
Query: 471 HVRASLASKVVLSEHRLTRKAFTW 542
+RA+L SK V E RL+ ++F W
Sbjct: 1044 LLRATLCSKRVAEEFRLSTESFEW 1067
[166][TOP]
>UniRef100_A9QMT4 DNA-directed RNA polymerase (Fragment) n=1 Tax=Pellioditis sp.
JU274 RepID=A9QMT4_9PELO
Length = 280
Score = 86.3 bits (212), Expect = 1e-15
Identities = 50/163 (30%), Positives = 88/163 (53%)
Frame = +3
Query: 54 YLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAK 233
+ ++ + +I + +L+ +EWAQL++DR LR ++F G+AK+ L N+ RLIWNA+
Sbjct: 137 FYTEDTVREIQGSTEALKLVEEEWAQLEEDRRLLR-KIFPRGDAKVVLPCNLNRLIWNAQ 195
Query: 234 RIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDE 413
+IF V ++L+P++++ V L + ++ S ED
Sbjct: 196 KIFKVETRKLTNLNPTRVIDGVR-NLSKKLIIVSGED----------------------- 231
Query: 414 ALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
+S+ AQ NATLL + +R++L SK + S ++L +AF W
Sbjct: 232 ---RISKQAQYNATLLMNILLRSTLCSKKMASTYKLNAEAFEW 271
[167][TOP]
>UniRef100_A9QMQ7 DNA-directed RNA polymerase (Fragment) n=1 Tax=Phasmarhabditis sp.
EM434 RepID=A9QMQ7_9BILA
Length = 398
Score = 86.3 bits (212), Expect = 1e-15
Identities = 53/174 (30%), Positives = 90/174 (51%)
Frame = +3
Query: 21 DLHLQESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLA 200
DL ++S Y ++ +++ + + EW QL++DR LR ++F +G+AK+ L
Sbjct: 132 DLSDEKSLRKMY-TEDVQHELQGSSEALKEAEDEWNQLEEDRRLLR-KIFPSGDAKIVLP 189
Query: 201 VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLP 380
N++RLIWNA++IF V +DL+P +++ V L + ++ S ED
Sbjct: 190 CNLQRLIWNAQKIFHVETRKPTDLNPLRVIEGVR-ELSKKLIIVSGED------------ 236
Query: 381 PDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
+S+ AQ NATLL + +R++L SK + + HRL +AF W
Sbjct: 237 --------------RISKQAQYNATLLMNILIRSTLCSKKMATSHRLNSEAFEW 276
[168][TOP]
>UniRef100_A9QME6 RNA polymerase 2 (Fragment) n=1 Tax=Pellioditis sp. JU274
RepID=A9QME6_9PELO
Length = 526
Score = 86.3 bits (212), Expect = 1e-15
Identities = 50/163 (30%), Positives = 88/163 (53%)
Frame = +3
Query: 54 YLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAK 233
+ ++ + +I + +L+ +EWAQL++DR LR ++F G+AK+ L N+ RLIWNA+
Sbjct: 39 FYTEDTVREIQGSTEALKLVEEEWAQLEEDRRLLR-KIFPRGDAKVVLPCNLNRLIWNAQ 97
Query: 234 RIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDE 413
+IF V ++L+P++++ V L + ++ S ED
Sbjct: 98 KIFKVETRKLTNLNPTRVIDGVR-NLSKKLIIVSGED----------------------- 133
Query: 414 ALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
+S+ AQ NATLL + +R++L SK + S ++L +AF W
Sbjct: 134 ---RISKQAQYNATLLMNILLRSTLCSKKMASTYKLNAEAFEW 173
[169][TOP]
>UniRef100_A6NN93 DNA-directed RNA polymerase n=1 Tax=Homo sapiens RepID=A6NN93_HUMAN
Length = 1970
Score = 86.3 bits (212), Expect = 1e-15
Identities = 51/162 (31%), Positives = 85/162 (52%)
Frame = +3
Query: 57 LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 236
L + + D+ S + L +E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++
Sbjct: 934 LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 992
Query: 237 IFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEA 416
IF + SDL P K+V V+ L + ++ D+
Sbjct: 993 IFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDD------------------------- 1027
Query: 417 LKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
LS AQ NATLLF +H+R++L S+ + E RL+ +AF W
Sbjct: 1028 --PLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDW 1067
[170][TOP]
>UniRef100_Q2PYR6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Coemansia reversa
RepID=Q2PYR6_9FUNG
Length = 1013
Score = 86.3 bits (212), Expect = 1e-15
Identities = 57/162 (35%), Positives = 83/162 (51%)
Frame = +3
Query: 57 LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 236
L + L +I V +L E+A+L DR +R + K+G K PL +N+ERLI A++
Sbjct: 850 LDFSILKNIEGNEAVQRVLDDEFAKLADDRRMMREFILKSGTDKQPLPLNVERLIKIAQQ 909
Query: 237 IFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEA 416
F++ S+L+P +IV V+ L + ED
Sbjct: 910 TFNIDVRRPSNLNPVEIVNLVKSLTESRIPVIRGED------------------------ 945
Query: 417 LKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
+LS AQ NATLLFQ+H+RASLA+K V+ E LT++AF W
Sbjct: 946 --QLSVEAQTNATLLFQIHLRASLATKRVIEEFHLTKEAFDW 985
[171][TOP]
>UniRef100_P08775 DNA-directed RNA polymerase II subunit RPB1 n=1 Tax=Mus musculus
RepID=RPB1_MOUSE
Length = 1970
Score = 86.3 bits (212), Expect = 1e-15
Identities = 51/162 (31%), Positives = 85/162 (52%)
Frame = +3
Query: 57 LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 236
L + + D+ S + L +E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++
Sbjct: 934 LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 992
Query: 237 IFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEA 416
IF + SDL P K+V V+ L + ++ D+
Sbjct: 993 IFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDD------------------------- 1027
Query: 417 LKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
LS AQ NATLLF +H+R++L S+ + E RL+ +AF W
Sbjct: 1028 --PLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDW 1067
[172][TOP]
>UniRef100_P24928 DNA-directed RNA polymerase II subunit RPB1 n=2 Tax=Euarchontoglires
RepID=RPB1_HUMAN
Length = 1970
Score = 86.3 bits (212), Expect = 1e-15
Identities = 51/162 (31%), Positives = 85/162 (52%)
Frame = +3
Query: 57 LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 236
L + + D+ S + L +E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++
Sbjct: 934 LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 992
Query: 237 IFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEA 416
IF + SDL P K+V V+ L + ++ D+
Sbjct: 993 IFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDD------------------------- 1027
Query: 417 LKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
LS AQ NATLLF +H+R++L S+ + E RL+ +AF W
Sbjct: 1028 --PLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDW 1067
[173][TOP]
>UniRef100_UPI0001985649 PREDICTED: similar to NRPB1 (RNA POLYMERASE II LARGE SUBUNIT); DNA
binding / DNA-directed RNA polymerase n=1 Tax=Vitis
vinifera RepID=UPI0001985649
Length = 1848
Score = 85.9 bits (211), Expect = 2e-15
Identities = 57/169 (33%), Positives = 85/169 (50%)
Frame = +3
Query: 36 ESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIER 215
E+ N Y+ + D+ + + + E +L+ DR L E+ TG+ P+ VN++R
Sbjct: 922 ENWNPSYMLPEHVEDLKTIREFRNVFDAEVQKLEADRFQLGTEIATTGDNSWPMPVNLKR 981
Query: 216 LIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSA 395
LIWNA++ F V SD+ P +IV V+ L R +V+ D D I+ E
Sbjct: 982 LIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVVPGD-----DLISME-------- 1028
Query: 396 SGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
AQ NATL F + +R++ ASK VL E+RLTR+AF W
Sbjct: 1029 --------------AQKNATLFFNILLRSTFASKRVLKEYRLTREAFEW 1063
[174][TOP]
>UniRef100_Q1ACU7 RNA polymerase II largest subunit (Fragment) n=1 Tax=Cissus
tuberosa RepID=Q1ACU7_9MAGN
Length = 240
Score = 85.9 bits (211), Expect = 2e-15
Identities = 55/169 (32%), Positives = 84/169 (49%)
Frame = +3
Query: 36 ESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIER 215
E+ N Y+ + D+ + + + E +L+ DR L E+ TG+ P+ VN++R
Sbjct: 74 ENWNPSYMLPEHVEDLKTIREFRNVFDAEVQKLEADRYQLGTEIATTGDNSWPMPVNLKR 133
Query: 216 LIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSA 395
LIWNA++ F V SD+ P +IV V+ L R +V+ D+ V+
Sbjct: 134 LIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVVPGDDLISVE------------- 180
Query: 396 SGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
AQ NATL F + +R++ ASK VL E+RLTR+AF W
Sbjct: 181 --------------AQKNATLFFNILLRSTFASKRVLKEYRLTREAFEW 215
[175][TOP]
>UniRef100_Q1ACS4 RNA polymerase II largest subunit (Fragment) n=1 Tax=Vitis
piasezkii RepID=Q1ACS4_9MAGN
Length = 240
Score = 85.9 bits (211), Expect = 2e-15
Identities = 57/169 (33%), Positives = 85/169 (50%)
Frame = +3
Query: 36 ESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIER 215
E+ N Y+ + D+ + + + E +L+ DR L E+ TG+ P+ VN++R
Sbjct: 74 ENWNPSYMLPEHVEDLKTIREFRNVFDAEVQKLEADRFQLGTEIATTGDNSWPMPVNLKR 133
Query: 216 LIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSA 395
LIWNA++ F V SD+ P +IV V+ L R +V+ D D I+ E
Sbjct: 134 LIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVVPGD-----DLISME-------- 180
Query: 396 SGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
AQ NATL F + +R++ ASK VL E+RLTR+AF W
Sbjct: 181 --------------AQKNATLFFNILLRSTFASKRVLKEYRLTREAFEW 215
[176][TOP]
>UniRef100_B7SNX3 DNA-directed RNA polymerase (Fragment) n=1 Tax=Persea americana
RepID=B7SNX3_PERAE
Length = 1009
Score = 85.9 bits (211), Expect = 2e-15
Identities = 56/169 (33%), Positives = 84/169 (49%)
Frame = +3
Query: 36 ESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIER 215
E+ N Y+ + D+ + + + E +L+ DR L E+ TG+ P+ VN++R
Sbjct: 840 ENWNPGYMLPEHVEDLKTIREFRNVFDAEVQKLEADRYQLGTEIATTGDNSWPMPVNLKR 899
Query: 216 LIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSA 395
LIWNA++ F V SD+ P +IV V+ L R +V+ D+
Sbjct: 900 LIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVVPGDD------------------ 941
Query: 396 SGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
LS AQ NATL F + +R++ ASK VL E+RLTR+AF W
Sbjct: 942 ---------FLSMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFEW 981
[177][TOP]
>UniRef100_A7NVN7 DNA-directed RNA polymerase n=1 Tax=Vitis vinifera
RepID=A7NVN7_VITVI
Length = 1010
Score = 85.9 bits (211), Expect = 2e-15
Identities = 57/169 (33%), Positives = 85/169 (50%)
Frame = +3
Query: 36 ESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIER 215
E+ N Y+ + D+ + + + E +L+ DR L E+ TG+ P+ VN++R
Sbjct: 159 ENWNPSYMLPEHVEDLKTIREFRNVFDAEVQKLEADRFQLGTEIATTGDNSWPMPVNLKR 218
Query: 216 LIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSA 395
LIWNA++ F V SD+ P +IV V+ L R +V+ D D I+ E
Sbjct: 219 LIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVVPGD-----DLISME-------- 265
Query: 396 SGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
AQ NATL F + +R++ ASK VL E+RLTR+AF W
Sbjct: 266 --------------AQKNATLFFNILLRSTFASKRVLKEYRLTREAFEW 300
[178][TOP]
>UniRef100_Q2N162 DNA-directed RNA polymerase II largest subunit (Fragment) n=1
Tax=Suberites fuscus RepID=Q2N162_9METZ
Length = 260
Score = 85.9 bits (211), Expect = 2e-15
Identities = 53/157 (33%), Positives = 81/157 (51%)
Frame = +3
Query: 72 LNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVR 251
+ D+ + L EW QL +DR+ +R VF TG +K+ L VN+ RLIWNA++IF V
Sbjct: 87 VRDLLTSSTAQTELESEWQQLCQDREIVR-SVFPTGNSKIVLPVNLNRLIWNAQKIFHVD 145
Query: 252 QNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELS 431
++DL P K+V V L ++ ++ ++ ELS
Sbjct: 146 IRGQTDLHPLKVVEGVRDLSNKLIIVQGED---------------------------ELS 178
Query: 432 ETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
+ AQ NATLLF+ +R+ L +K + EH+L +AF W
Sbjct: 179 KQAQTNATLLFKSLLRSVLCTKKMSEEHKLNLEAFEW 215
[179][TOP]
>UniRef100_Q17085 DNA-directed RNA polymerase (Fragment) n=1 Tax=Artemia salina
RepID=Q17085_ARTSA
Length = 1341
Score = 85.9 bits (211), Expect = 2e-15
Identities = 58/173 (33%), Positives = 89/173 (51%), Gaps = 4/173 (2%)
Frame = +3
Query: 36 ESSNSPYLSQAALNDIHSG----GDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 203
+ SN L + D+ +V + KEW L KDR+ LR +VF +GE K+ L
Sbjct: 835 DPSNERQLRKTFTEDVTKSLLGDSEVITEIEKEWEALVKDREALR-KVFPSGENKVVLPC 893
Query: 204 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPP 383
N++R+IWNA++ F + + SDLSP ++++ V LL + V+ + ED
Sbjct: 894 NLQRMIWNAQKTFHINKRMPSDLSPLRVIQGVRDLL-KNCVIVNGED------------- 939
Query: 384 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
+LS+ A NATLLFQ VR++L +K + E+RL +AF W
Sbjct: 940 -------------KLSKQANENATLLFQCLVRSTLCTKRLADEYRLNTEAFEW 979
[180][TOP]
>UniRef100_Q2PYS6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Polychytrium
aggregatum RepID=Q2PYS6_9FUNG
Length = 1016
Score = 85.9 bits (211), Expect = 2e-15
Identities = 56/150 (37%), Positives = 77/150 (51%)
Frame = +3
Query: 87 SGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRS 266
S G L +E+ QL+KDR+ LR +FK G + PL VN++RLIWNA+ F+V +
Sbjct: 864 SDGLTQNRLDQEFEQLRKDRETLRWTIFKDGSSSWPLPVNLKRLIWNAQNQFEVGPRKPT 923
Query: 267 DLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQL 446
DL P I VE LL + V+ ++ LS AQ
Sbjct: 924 DLHPLHITESVEQLLDKLVVVRGND---------------------------PLSVEAQK 956
Query: 447 NATLLFQVHVRASLASKVVLSEHRLTRKAF 536
NATLLFQ+ VR++LA++ VL E L K+F
Sbjct: 957 NATLLFQILVRSTLATRRVLEEFHLNSKSF 986
[181][TOP]
>UniRef100_Q1ACU4 RNA polymerase II largest subunit (Fragment) n=1 Tax=Gunnera
chilensis RepID=Q1ACU4_GUNCH
Length = 240
Score = 85.5 bits (210), Expect = 2e-15
Identities = 55/169 (32%), Positives = 85/169 (50%)
Frame = +3
Query: 36 ESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIER 215
E+ N Y+ + D+ + + + E +L+ DR L E+ TG+ P+ VN++R
Sbjct: 74 ENWNPSYMLPEHVEDLKTIREFRNVFDAEVQKLEADRFQLGTEIATTGDNTWPMPVNLKR 133
Query: 216 LIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSA 395
LIWNA++ F V SD+ P +IV V+ L R +V+ D+
Sbjct: 134 LIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVVPGDD------------------ 175
Query: 396 SGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
+S AQ NATL F + +R++ ASK VL+E+RLTR+AF W
Sbjct: 176 ---------LMSMEAQKNATLFFNILLRSTFASKRVLNEYRLTREAFEW 215
[182][TOP]
>UniRef100_C0JPA2 DNA-directed RNA polymerase (Fragment) n=1 Tax=Trichoplax adhaerens
RepID=C0JPA2_TRIAD
Length = 625
Score = 85.5 bits (210), Expect = 2e-15
Identities = 57/163 (34%), Positives = 83/163 (50%)
Frame = +3
Query: 54 YLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAK 233
YL + I + +V E L E+ QL KDR+ +R + + G++++ L VN+ RLIWNA+
Sbjct: 460 YLHGNIVRSIITDAEVKEKLQSEFEQLSKDRNAVR-SILQNGDSRVALPVNLNRLIWNAQ 518
Query: 234 RIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDE 413
+IF V SDL P K++ V L R V+ ED
Sbjct: 519 KIFHVDPRKSSDLHPMKVIDDV-CELSRKLVIVHGED----------------------- 554
Query: 414 ALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
+S+ AQ NATLLF + +R+ L+SK V E+ LT +AF W
Sbjct: 555 ---RISKQAQENATLLFNILLRSVLSSKRVTEEYHLTSEAFDW 594
[183][TOP]
>UniRef100_B3RM26 DNA-directed RNA polymerase n=1 Tax=Trichoplax adhaerens
RepID=B3RM26_TRIAD
Length = 1784
Score = 85.5 bits (210), Expect = 2e-15
Identities = 57/163 (34%), Positives = 83/163 (50%)
Frame = +3
Query: 54 YLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAK 233
YL + I + +V E L E+ QL KDR+ +R + + G++++ L VN+ RLIWNA+
Sbjct: 921 YLHGNIVRSIITDAEVKEKLQSEFEQLSKDRNAVR-SILQNGDSRVALPVNLNRLIWNAQ 979
Query: 234 RIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDE 413
+IF V SDL P K++ V L R V+ ED
Sbjct: 980 KIFHVDPRKSSDLHPMKVIDDV-CELSRKLVIVHGED----------------------- 1015
Query: 414 ALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
+S+ AQ NATLLF + +R+ L+SK V E+ LT +AF W
Sbjct: 1016 ---RISKQAQENATLLFNILLRSVLSSKRVTEEYHLTSEAFDW 1055
[184][TOP]
>UniRef100_A9QMF9 DNA-directed RNA polymerase (Fragment) n=1 Tax=Rhabditis rainai
RepID=A9QMF9_9BILA
Length = 618
Score = 85.5 bits (210), Expect = 2e-15
Identities = 51/171 (29%), Positives = 88/171 (51%), Gaps = 2/171 (1%)
Frame = +3
Query: 36 ESSNSPYLSQAALNDIHS--GGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNI 209
E + + ++ ++D+ D E + EWAQL++DR LR ++F TG AK+ L N+
Sbjct: 125 EKTMKKFFTEDVIHDLQGPDSKDAIETVEAEWAQLEEDRRLLR-KIFPTGNAKVVLPCNL 183
Query: 210 ERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDG 389
+RLIWN ++IF V + L+P K++ V+ L + +++ D+
Sbjct: 184 QRLIWNXQKIFRVETRKPTSLNPLKVISGVQELSKKLIIVSGDD---------------- 227
Query: 390 SASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
+S+ AQ NATLL + +R++L SK + S ++L +AF W
Sbjct: 228 -----------SISKQAQYNATLLMNILLRSTLCSKRMASMYKLNSEAFEW 267
[185][TOP]
>UniRef100_A9QMF5 DNA-directed RNA polymerase (Fragment) n=1 Tax=Rhabditoides inermis
RepID=A9QMF5_9BILA
Length = 630
Score = 85.5 bits (210), Expect = 2e-15
Identities = 50/161 (31%), Positives = 83/161 (51%)
Frame = +3
Query: 60 SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRI 239
++ + D+ S D + + EWAQL++DR LR ++F G+AK+ L N++RLIWNA++I
Sbjct: 136 TEEVIRDLQSNPDALKEVECEWAQLEEDRRLLR-KIFPKGDAKIVLPCNLQRLIWNAQKI 194
Query: 240 FDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEAL 419
F V +DL P +++ V + + ++ ED
Sbjct: 195 FHVETRKPTDLHPLRVIEGVRDMAKKL-IIVGGED------------------------- 228
Query: 420 KELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
+S+ AQ NATLL + VR++L SK + ++L +AF W
Sbjct: 229 -RISKQAQYNATLLMNILVRSTLCSKKMAEHYKLNSEAFEW 268
[186][TOP]
>UniRef100_Q2PYS1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Basidiobolus ranarum
RepID=Q2PYS1_9FUNG
Length = 1015
Score = 85.5 bits (210), Expect = 2e-15
Identities = 51/157 (32%), Positives = 80/157 (50%)
Frame = +3
Query: 72 LNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVR 251
L D+ +L +E+ QL DR LR +F +G+ PL N++RL+WNA+ IF +
Sbjct: 858 LKDVEGNDSTQMMLDEEYRQLCDDRRVLREFIFTSGDQAWPLPGNLKRLVWNAQNIFHID 917
Query: 252 QNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELS 431
+ S+L P +I+ V+LL+ R V+ + +LS
Sbjct: 918 KRKPSNLHPLQIIEGVKLLIDRLVVVRGSD---------------------------KLS 950
Query: 432 ETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
AQLNATLL+Q +R++L++K VL + L +AF W
Sbjct: 951 NEAQLNATLLYQCLLRSTLSTKRVLEDFHLNAQAFEW 987
[187][TOP]
>UniRef100_Q2PYQ9 DNA-directed RNA polymerase (Fragment) n=1 Tax=Endogone pisiformis
RepID=Q2PYQ9_9FUNG
Length = 845
Score = 85.5 bits (210), Expect = 2e-15
Identities = 56/154 (36%), Positives = 82/154 (53%)
Frame = +3
Query: 81 IHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQND 260
I DV LL +E+ QL++DRD L +FKTG+ K PL N++RLI NA++IF + +
Sbjct: 691 IEGNEDVQGLLDEEFQQLQEDRDTLSKFIFKTGDGKWPLPTNLQRLITNAQQIFHIDRRK 750
Query: 261 RSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETA 440
SDL+P I+ V L + E+L GS ++S A
Sbjct: 751 PSDLNPVNIIEGVRKL------------------SEELLVVRGS---------DKISVEA 783
Query: 441 QLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
Q NATLL+Q+ +R++ ++K VL E L AFT+
Sbjct: 784 QRNATLLYQILLRSTFSTKRVLEEFHLNSAAFTY 817
[188][TOP]
>UniRef100_UPI00005A0B1C PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide
A isoform 8 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B1C
Length = 1719
Score = 85.1 bits (209), Expect = 3e-15
Identities = 50/157 (31%), Positives = 83/157 (52%)
Frame = +3
Query: 72 LNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVR 251
+ D+ S + L +E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++IF +
Sbjct: 933 VKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQKIFHIN 991
Query: 252 QNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELS 431
SDL P K+V V+ L + ++ D+ LS
Sbjct: 992 PRLPSDLHPIKVVEGVKELSKKLVIVNGDD---------------------------PLS 1024
Query: 432 ETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
AQ NATLLF +H+R++L S+ + E RL+ +AF W
Sbjct: 1025 RQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDW 1061
[189][TOP]
>UniRef100_UPI00005A0B1B PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide
A isoform 7 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B1B
Length = 1858
Score = 85.1 bits (209), Expect = 3e-15
Identities = 50/157 (31%), Positives = 83/157 (52%)
Frame = +3
Query: 72 LNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVR 251
+ D+ S + L +E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++IF +
Sbjct: 933 VKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQKIFHIN 991
Query: 252 QNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELS 431
SDL P K+V V+ L + ++ D+ LS
Sbjct: 992 PRLPSDLHPIKVVEGVKELSKKLVIVNGDD---------------------------PLS 1024
Query: 432 ETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
AQ NATLLF +H+R++L S+ + E RL+ +AF W
Sbjct: 1025 RQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDW 1061
[190][TOP]
>UniRef100_Q71ET6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Magnolia x soulangeana
RepID=Q71ET6_MAGSO
Length = 1010
Score = 85.1 bits (209), Expect = 3e-15
Identities = 55/166 (33%), Positives = 82/166 (49%)
Frame = +3
Query: 45 NSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIW 224
N Y+ + D+ + + + E +L+ DR L E+ TG+ P+ VN++RLIW
Sbjct: 844 NPSYMLPEHVEDLKTIREFRNVFDAEVQKLEADRYQLGTEIATTGDNSWPMPVNLKRLIW 903
Query: 225 NAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGP 404
NA++ F V SD+ P +IV V+ L R +V+ D+
Sbjct: 904 NAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVVPGDD--------------------- 942
Query: 405 QDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
LS AQ NATL F + +R++ ASK VL E+RLTR+AF W
Sbjct: 943 ------FLSMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFEW 982
[191][TOP]
>UniRef100_Q1L5Y6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Solanum lycopersicum
RepID=Q1L5Y6_SOLLC
Length = 773
Score = 85.1 bits (209), Expect = 3e-15
Identities = 55/166 (33%), Positives = 83/166 (50%)
Frame = +3
Query: 45 NSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIW 224
N Y+ A+ D+ ++ + E +L+ DR L E+ TG+ PL VNI+RL+
Sbjct: 602 NPSYMLPEAVEDLKGIREIRSVFDAEVQKLEADRHQLGTEIAVTGDNSWPLPVNIQRLVL 661
Query: 225 NAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGP 404
NA++ F + SD+ P +IV V+ L R +V+ D+
Sbjct: 662 NAQKTFKIDFRRPSDMHPMEIVEAVDKLQERLKVVPGDD--------------------- 700
Query: 405 QDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
LS AQ NATL F + +R++LASK VL E+RL+R+AF W
Sbjct: 701 ------YLSMEAQKNATLFFNILLRSALASKRVLKEYRLSREAFEW 740
[192][TOP]
>UniRef100_Q1ACT7 RNA polymerase II largest subunit (Fragment) n=1 Tax=Macadamia
integrifolia RepID=Q1ACT7_MACIN
Length = 240
Score = 85.1 bits (209), Expect = 3e-15
Identities = 56/169 (33%), Positives = 83/169 (49%)
Frame = +3
Query: 36 ESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIER 215
ES N Y+ + D+ + + + E +L+ DR L E+ TG+ P+ VN++R
Sbjct: 74 ESWNPSYMLPEHVEDLKTIREFRNVFDAEVQKLEADRYQLGTEIATTGDNSWPMPVNLKR 133
Query: 216 LIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSA 395
LIWNA++ F V SD+ P +IV V+ L R +V+ D+
Sbjct: 134 LIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVVPGDD------------------ 175
Query: 396 SGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
LS AQ NATL + +R++ ASK VL E+RLTR+AF W
Sbjct: 176 ---------FLSMEAQKNATLFLNILLRSTFASKRVLKEYRLTREAFEW 215
[193][TOP]
>UniRef100_Q1ACT6 RNA polymerase II largest subunit (Fragment) n=1 Tax=Macadamia
integrifolia RepID=Q1ACT6_MACIN
Length = 240
Score = 85.1 bits (209), Expect = 3e-15
Identities = 56/169 (33%), Positives = 84/169 (49%)
Frame = +3
Query: 36 ESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIER 215
E+ N Y+ + D+ + + + E +L+ DR L E+ TGE P+ VN++R
Sbjct: 74 ENWNPNYMLPEHVEDLKTIREFRNVFDAEVQKLEADRYQLGTEIATTGENSWPMPVNLKR 133
Query: 216 LIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSA 395
LIWNA++ F + SD+ P +IV V+ L R +V+ D+
Sbjct: 134 LIWNAQKTFKLDLRRPSDMHPMEIVEAVDKLQERLKVVPGDD------------------ 175
Query: 396 SGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
LS AQ NATLLF + +R++ ASK VL E+ LTR+AF W
Sbjct: 176 ---------FLSTEAQKNATLLFNILLRSTFASKRVLKEYGLTREAFDW 215
[194][TOP]
>UniRef100_B7SNX0 DNA-directed RNA polymerase (Fragment) n=1 Tax=Liriodendron
tulipifera RepID=B7SNX0_LIRTU
Length = 1010
Score = 85.1 bits (209), Expect = 3e-15
Identities = 55/166 (33%), Positives = 82/166 (49%)
Frame = +3
Query: 45 NSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIW 224
N Y+ + D+ + + + E +L+ DR L E+ TG+ P+ VN++RLIW
Sbjct: 844 NPSYMLPEHVEDLKTIREFRNVFDAEVQKLEADRYQLGTEIATTGDNSWPMPVNLKRLIW 903
Query: 225 NAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGP 404
NA++ F V SD+ P +IV V+ L R +V+ D+
Sbjct: 904 NAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVVPGDD--------------------- 942
Query: 405 QDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
LS AQ NATL F + +R++ ASK VL E+RLTR+AF W
Sbjct: 943 ------FLSMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFEW 982
[195][TOP]
>UniRef100_B7SNW9 DNA-directed RNA polymerase (Fragment) n=1 Tax=Illicium parviflorum
RepID=B7SNW9_ILLPA
Length = 1013
Score = 85.1 bits (209), Expect = 3e-15
Identities = 55/166 (33%), Positives = 82/166 (49%)
Frame = +3
Query: 45 NSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIW 224
N Y+ + D+ + + + E +L+ DR L E+ TG+ P+ VN++RLIW
Sbjct: 847 NPSYMLPEHVKDLKTIREFRNVFDAEVQKLEADRFQLGTEIATTGDNSWPMPVNLKRLIW 906
Query: 225 NAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGP 404
NA++ F V SD+ P +IV V+ L R +V+ D+
Sbjct: 907 NAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVVPGDD--------------------- 945
Query: 405 QDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
LS AQ NATL F + +R++ ASK VL E+RLTR+AF W
Sbjct: 946 ------FLSMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFEW 985
[196][TOP]
>UniRef100_Q9XZU9 DNA-directed RNA polymerase n=1 Tax=Drosophila subobscura
RepID=Q9XZU9_DROSU
Length = 1889
Score = 85.1 bits (209), Expect = 3e-15
Identities = 51/171 (29%), Positives = 86/171 (50%), Gaps = 4/171 (2%)
Frame = +3
Query: 42 SNSPYLSQA----ALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNI 209
SN Y+ + + ++ + + L EW L DRD LR +F G++K+ L N+
Sbjct: 917 SNERYMRKVFTDEVIKEMTDSSEAIQDLESEWDHLMHDRDNLR-VIFPNGDSKVVLPCNL 975
Query: 210 ERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDG 389
+R+IWN ++IF + + +DLSP ++++ V+ LL R ++T +
Sbjct: 976 QRMIWNVQKIFHINKRLPTDLSPMRVIKGVKTLLERCVIVTGAD---------------- 1019
Query: 390 SASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
+S+ A NATLLFQ +R++L +K V E RL+ +AF W
Sbjct: 1020 -----------RISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEW 1059
[197][TOP]
>UniRef100_Q9XZS1 DNA-directed RNA polymerase n=1 Tax=Drosophila guanche
RepID=Q9XZS1_DROGU
Length = 1889
Score = 85.1 bits (209), Expect = 3e-15
Identities = 51/171 (29%), Positives = 86/171 (50%), Gaps = 4/171 (2%)
Frame = +3
Query: 42 SNSPYLSQA----ALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNI 209
SN Y+ + + ++ + + L EW L DRD LR +F G++K+ L N+
Sbjct: 917 SNERYMRKVFTDEVIKEMTDSSEAIQDLESEWDHLMHDRDNLR-VIFPNGDSKVVLPCNL 975
Query: 210 ERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDG 389
+R+IWN ++IF + + +DLSP ++++ V+ LL R ++T +
Sbjct: 976 QRMIWNVQKIFHINKRLPTDLSPMRVIKGVKTLLERCVIVTGAD---------------- 1019
Query: 390 SASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
+S+ A NATLLFQ +R++L +K V E RL+ +AF W
Sbjct: 1020 -----------RISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEW 1059
[198][TOP]
>UniRef100_Q9NJN3 RNA polymerase II largest subunit (Fragment) n=1 Tax=Armadillidium
vulgare RepID=Q9NJN3_ARMVU
Length = 433
Score = 85.1 bits (209), Expect = 3e-15
Identities = 53/178 (29%), Positives = 90/178 (50%), Gaps = 4/178 (2%)
Frame = +3
Query: 21 DLHLQESSNSPYL----SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAK 188
D + + +N YL ++ + ++ + +L EW +L++DR LR +VF G+ K
Sbjct: 75 DKYRFDVTNERYLRHLFNEDVVRELLGSPEAINILEVEWQKLQEDRVALR-QVFPKGDTK 133
Query: 189 LPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAR 368
+ L N+ER+IWN ++IF + + ++DLSP K+V V L + +++ ++
Sbjct: 134 VVLPCNLERMIWNVQKIFHINKRMQTDLSPIKVVEGVNETLRKCMIVSGED--------- 184
Query: 369 EMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
+S A NATLLF VR++L +K V E+RLT +AF W
Sbjct: 185 ------------------RISVQANENATLLFHCLVRSTLCTKKVSEEYRLTTEAFNW 224
[199][TOP]
>UniRef100_Q6JU60 DNA-directed RNA polymerase (Fragment) n=1 Tax=Armadillidium
vulgare RepID=Q6JU60_ARMVU
Length = 736
Score = 85.1 bits (209), Expect = 3e-15
Identities = 53/178 (29%), Positives = 90/178 (50%), Gaps = 4/178 (2%)
Frame = +3
Query: 21 DLHLQESSNSPYL----SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAK 188
D + + +N YL ++ + ++ + +L EW +L++DR LR +VF G+ K
Sbjct: 378 DKYRFDVTNERYLRHLFNEDVVRELLGSPEAINILEVEWQKLQEDRVALR-QVFPKGDTK 436
Query: 189 LPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAR 368
+ L N+ER+IWN ++IF + + ++DLSP K+V V L + +++ ++
Sbjct: 437 VVLPCNLERMIWNVQKIFHINKRMQTDLSPIKVVEGVNETLRKCMIVSGED--------- 487
Query: 369 EMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
+S A NATLLF VR++L +K V E+RLT +AF W
Sbjct: 488 ------------------RISVQANENATLLFHCLVRSTLCTKKVSEEYRLTTEAFNW 527
[200][TOP]
>UniRef100_A1YIB6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Basidiobolus ranarum
RepID=A1YIB6_9FUNG
Length = 1018
Score = 85.1 bits (209), Expect = 3e-15
Identities = 51/157 (32%), Positives = 79/157 (50%)
Frame = +3
Query: 72 LNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVR 251
L D+ +L +E+ QL DR LR +F +G+ PL N+ RL+WNA+ IF +
Sbjct: 856 LKDVEGNDSTQMMLDEEYRQLCDDRRVLREFIFTSGDQAWPLPGNLRRLVWNAQNIFHID 915
Query: 252 QNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELS 431
+ S+L P +I+ V+LL+ R V+ + +LS
Sbjct: 916 KRKPSNLHPLQIIEGVKLLIDRLIVVRGSD---------------------------KLS 948
Query: 432 ETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
AQLNATLL+Q +R++L++K VL + L +AF W
Sbjct: 949 NEAQLNATLLYQCLLRSTLSTKRVLEDFHLNAQAFEW 985
[201][TOP]
>UniRef100_UPI0000F2BF13 PREDICTED: similar to RNA polymerase II isoform 2 n=1 Tax=Monodelphis
domestica RepID=UPI0000F2BF13
Length = 1932
Score = 84.7 bits (208), Expect = 4e-15
Identities = 53/162 (32%), Positives = 86/162 (53%)
Frame = +3
Query: 57 LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 236
L + + D+ S + L +E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++
Sbjct: 934 LQEELVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 992
Query: 237 IFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEA 416
IF + SDL P K+V V+ L + V+ + ED
Sbjct: 993 IFHINPRLPSDLHPIKVVDGVK-ELSKKLVIVNGED------------------------ 1027
Query: 417 LKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
LS AQ NATLLF +H+R++L S+ + E RL+ +AF W
Sbjct: 1028 --PLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDW 1067
[202][TOP]
>UniRef100_UPI0000F2BF12 PREDICTED: similar to RNA polymerase II isoform 1 n=1 Tax=Monodelphis
domestica RepID=UPI0000F2BF12
Length = 1970
Score = 84.7 bits (208), Expect = 4e-15
Identities = 53/162 (32%), Positives = 86/162 (53%)
Frame = +3
Query: 57 LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 236
L + + D+ S + L +E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++
Sbjct: 934 LQEELVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 992
Query: 237 IFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEA 416
IF + SDL P K+V V+ L + V+ + ED
Sbjct: 993 IFHINPRLPSDLHPIKVVDGVK-ELSKKLVIVNGED------------------------ 1027
Query: 417 LKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
LS AQ NATLLF +H+R++L S+ + E RL+ +AF W
Sbjct: 1028 --PLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDW 1067
[203][TOP]
>UniRef100_UPI00005A0B1A PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
(RPB1) isoform 6 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B1A
Length = 1767
Score = 84.7 bits (208), Expect = 4e-15
Identities = 51/164 (31%), Positives = 87/164 (53%), Gaps = 2/164 (1%)
Frame = +3
Query: 57 LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV--NIERLIWNA 230
L + + D+ S + L +E+ ++++DR+ LR +F TG++K+P+ + N+ R+IWNA
Sbjct: 920 LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVPVVLPCNLLRMIWNA 978
Query: 231 KRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQD 410
++IF + SDL P K+V V+ L + ++ D+
Sbjct: 979 QKIFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDDP---------------------- 1016
Query: 411 EALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
LS AQ NATLLF +H+R++L S+ + E RL+ +AF W
Sbjct: 1017 -----LSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDW 1055
[204][TOP]
>UniRef100_Q1ACU8 RNA polymerase II largest subunit (Fragment) n=1 Tax=Buxus
sempervirens RepID=Q1ACU8_BUXSE
Length = 240
Score = 84.7 bits (208), Expect = 4e-15
Identities = 55/169 (32%), Positives = 84/169 (49%)
Frame = +3
Query: 36 ESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIER 215
E+ + Y+ + D+ + + + E +L+ DR L E+ TG+ P+ VN++R
Sbjct: 74 ENWSPSYMLPEHVEDLKTIREFRNVFDAEVQKLQADRFQLGTEIATTGDNNWPMPVNLKR 133
Query: 216 LIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSA 395
LIWNA++ F V SD+ P +IV V+ L R +V+ D+
Sbjct: 134 LIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVVPGDD------------------ 175
Query: 396 SGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
LS AQ NATL F + +R++ ASK VL E+RLTR+AF W
Sbjct: 176 ---------FLSTEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFEW 215
[205][TOP]
>UniRef100_Q1ACS5 RNA polymerase II largest subunit (Fragment) n=1 Tax=Tetracentron
sinense RepID=Q1ACS5_9MAGN
Length = 240
Score = 84.7 bits (208), Expect = 4e-15
Identities = 55/169 (32%), Positives = 83/169 (49%)
Frame = +3
Query: 36 ESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIER 215
E+ N Y+ + D+ + + + E +L DR L E+ TG+ P+ VN++R
Sbjct: 74 ENWNPSYMLPEHVEDLKTIREFRNVFDAEVQKLAADRCQLGTEIATTGDNSWPMPVNLKR 133
Query: 216 LIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSA 395
LIWNA++ F V SD+ P +IV V+ L R +V+ D+
Sbjct: 134 LIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVVPGDD------------------ 175
Query: 396 SGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
+S AQ NATL F + +R++ ASK VL E+RLTR+AF W
Sbjct: 176 ---------LMSMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFEW 215
[206][TOP]
>UniRef100_Q1ACS3 RNA polymerase II largest subunit (Fragment) n=1 Tax=Vitis
piasezkii RepID=Q1ACS3_9MAGN
Length = 240
Score = 84.7 bits (208), Expect = 4e-15
Identities = 55/169 (32%), Positives = 88/169 (52%)
Frame = +3
Query: 36 ESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIER 215
E+ N Y+ + D+ + + + E +L+ DR+ L E+ TG++ + VN++R
Sbjct: 74 ENWNPNYMFREHAEDLKTIQEFRNVFDAEVQKLEADRNQLGTEIASTGDSFWSMPVNLKR 133
Query: 216 LIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSA 395
LIWNA++ F + SD+ P +IV V+ L R +V+ D D I+ E
Sbjct: 134 LIWNAQKTFKIDLRRSSDMHPMEIVETVDKLQERLKVVPGD-----DLISME-------- 180
Query: 396 SGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
AQ NATLLF + +R++ ASK VL+E+RL+R+AF W
Sbjct: 181 --------------AQKNATLLFNILLRSTFASKRVLNEYRLSREAFDW 215
[207][TOP]
>UniRef100_B7SNW7 DNA-directed RNA polymerase (Fragment) n=1 Tax=Ceratophyllum demersum
RepID=B7SNW7_CERDE
Length = 1010
Score = 84.7 bits (208), Expect = 4e-15
Identities = 55/166 (33%), Positives = 81/166 (48%)
Frame = +3
Query: 45 NSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIW 224
N Y+ + D+ + + + E +L+ DR L E+ TG+ P+ VN++RLIW
Sbjct: 844 NPSYMLPEHVEDLKTIREFRNVFDAEVQKLEADRYQLGTEIATTGDNSWPMPVNLKRLIW 903
Query: 225 NAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGP 404
NA++ F V SD+ P +IV V+ L R +V+ D+
Sbjct: 904 NAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVVPGDD--------------------- 942
Query: 405 QDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
LS AQ NATL F + +R + ASK VL E+RLTR+AF W
Sbjct: 943 ------FLSMEAQKNATLFFNILLRTTFASKRVLKEYRLTREAFEW 982
[208][TOP]
>UniRef100_B7SNW6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Beta vulgaris
RepID=B7SNW6_BETVU
Length = 1012
Score = 84.7 bits (208), Expect = 4e-15
Identities = 55/166 (33%), Positives = 81/166 (48%)
Frame = +3
Query: 45 NSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIW 224
N Y+ + D+ + + + E +L+ DR L E+ TG+ P+ VN++RLIW
Sbjct: 846 NPSYMLPEHVEDLKTIREFRNVFDAEVQKLEADRYQLGTEIATTGDNSWPMPVNLKRLIW 905
Query: 225 NAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGP 404
NA++ F V SD+ P +IV V+ L R +V+ D+
Sbjct: 906 NAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVVPGDD--------------------- 944
Query: 405 QDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
LS AQ NATL F + +R + ASK VL E+RLTR+AF W
Sbjct: 945 ------FLSMEAQKNATLFFNILLRTTFASKRVLKEYRLTREAFEW 984
[209][TOP]
>UniRef100_Q7Q3C6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Anopheles gambiae
RepID=Q7Q3C6_ANOGA
Length = 1878
Score = 84.7 bits (208), Expect = 4e-15
Identities = 49/161 (30%), Positives = 83/161 (51%)
Frame = +3
Query: 60 SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRI 239
++ + ++ V + + E+ QL +DR+ LR ++F G++K+ L N++R+IWN ++I
Sbjct: 925 NEDVIKELTETSSVIQEIEAEYEQLLRDREALR-QIFPNGDSKVVLPCNLQRMIWNVQKI 983
Query: 240 FDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEAL 419
F + + +DLSP K+++ V LL R ++ +
Sbjct: 984 FHINKRSPTDLSPLKVIQGVRDLLQRCVIVAGTD-------------------------- 1017
Query: 420 KELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
LS+ A NATLLFQ VR++L +K V E RL +AF W
Sbjct: 1018 -RLSKQANENATLLFQCLVRSTLCTKYVAEEFRLNNEAFEW 1057
[210][TOP]
>UniRef100_A9QMP7 RNA polymerase 2 (Fragment) n=1 Tax=Rhabditoides inermis
RepID=A9QMP7_9BILA
Length = 440
Score = 84.7 bits (208), Expect = 4e-15
Identities = 50/157 (31%), Positives = 81/157 (51%)
Frame = +3
Query: 72 LNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVR 251
+ D+ S D + + EWAQL++DR LR ++F G+AK+ L N++RLIWNA++IF V
Sbjct: 103 IRDLQSNPDALKEVECEWAQLEEDRRLLR-KIFPKGDAKIVLPCNLQRLIWNAQKIFHVE 161
Query: 252 QNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELS 431
+DL P +++ V + + ++ ED +S
Sbjct: 162 TRKPTDLHPLRVIEGVRDMAKKL-IIVGGED--------------------------RIS 194
Query: 432 ETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
+ AQ NATLL + VR++L SK + ++L +AF W
Sbjct: 195 KQAQYNATLLMNILVRSTLCSKKMAEHYKLNSEAFEW 231
[211][TOP]
>UniRef100_A9QMP1 RNA polymerase 2 (Fragment) n=1 Tax=Pellioditis mediterranea
RepID=A9QMP1_9PELO
Length = 276
Score = 84.7 bits (208), Expect = 4e-15
Identities = 46/161 (28%), Positives = 83/161 (51%)
Frame = +3
Query: 60 SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRI 239
++ + D+ + + + +EW QL+ DR LR ++F TG+AK+ L N++RLIWNA++I
Sbjct: 127 TEDVIRDLQGSSEALKQIEEEWHQLEHDRRLLR-KIFPTGDAKIVLPCNLQRLIWNAQKI 185
Query: 240 FDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEAL 419
F V +DLSP +++ V + + ++ ++
Sbjct: 186 FHVETRKPTDLSPLRVIEGVRDMSEKLIIVAGED-------------------------- 219
Query: 420 KELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
+S+ AQ NATLL + +R++L SK + ++L +AF W
Sbjct: 220 -RISKQAQYNATLLMNILLRSTLCSKKMAVSYKLNSEAFEW 259
[212][TOP]
>UniRef100_A9QME7 DNA-directed RNA polymerase (Fragment) n=1 Tax=Pellioditis
mediterranea RepID=A9QME7_9PELO
Length = 618
Score = 84.7 bits (208), Expect = 4e-15
Identities = 46/161 (28%), Positives = 83/161 (51%)
Frame = +3
Query: 60 SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRI 239
++ + D+ + + + +EW QL+ DR LR ++F TG+AK+ L N++RLIWNA++I
Sbjct: 141 TEDVIRDLQGSSEALKQIEEEWHQLEHDRRLLR-KIFPTGDAKIVLPCNLQRLIWNAQKI 199
Query: 240 FDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEAL 419
F V +DLSP +++ V + + ++ ++
Sbjct: 200 FHVETRKPTDLSPLRVIEGVRDMSEKLIIVAGED-------------------------- 233
Query: 420 KELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
+S+ AQ NATLL + +R++L SK + ++L +AF W
Sbjct: 234 -RISKQAQYNATLLMNILLRSTLCSKKMAVSYKLNSEAFEW 273
[213][TOP]
>UniRef100_Q71EU1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Zamia muricata
RepID=Q71EU1_9SPER
Length = 1013
Score = 84.3 bits (207), Expect = 5e-15
Identities = 52/169 (30%), Positives = 84/169 (49%)
Frame = +3
Query: 36 ESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIER 215
E+ N Y+ + D+ + + + E +L+ DR L E+ +G+ P+ VN++R
Sbjct: 844 ENWNPSYMLPEHVEDLKTIREFQNVFDAEVQKLEADRRQLGTEIAPSGDNSWPMPVNLKR 903
Query: 216 LIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSA 395
LIWNA++ F + SD+ P +IV V+ L R +V+ D+ ++
Sbjct: 904 LIWNAQKTFKIDLRKPSDMHPMEIVEAVDKLQERLKVVPGDDLMSIE------------- 950
Query: 396 SGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
AQ NATL F + +R++ ASK VL E+RLTR+AF W
Sbjct: 951 --------------AQKNATLFFNILLRSTFASKRVLKEYRLTREAFEW 985
[214][TOP]
>UniRef100_Q71ET5 DNA-directed RNA polymerase (Fragment) n=1 Tax=Nymphaea odorata
RepID=Q71ET5_NYMOD
Length = 1013
Score = 84.3 bits (207), Expect = 5e-15
Identities = 56/169 (33%), Positives = 86/169 (50%)
Frame = +3
Query: 36 ESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIER 215
E+ + YL + D+ + ++ ++ E +L+ DR L E+ TG+ P+ VN++R
Sbjct: 844 ENWDPSYLQPDFVEDLKTIKELQDVFHAEVQKLETDRRQLATEIATTGDNSWPMPVNLKR 903
Query: 216 LIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSA 395
LIWNA++ F V SD+ P +IV V+ L R +V+ EDA
Sbjct: 904 LIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVVPG-EDA---------------- 946
Query: 396 SGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
+S AQ NATL F + +R++ ASK V E+RLTR+AF W
Sbjct: 947 ----------MSMEAQKNATLFFNILLRSTFASKRVSKEYRLTREAFDW 985
[215][TOP]
>UniRef100_Q1L5Y7 DNA-directed RNA polymerase (Fragment) n=1 Tax=Antirrhinum majus
RepID=Q1L5Y7_ANTMA
Length = 780
Score = 84.3 bits (207), Expect = 5e-15
Identities = 56/166 (33%), Positives = 82/166 (49%)
Frame = +3
Query: 45 NSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIW 224
N Y+ A+ D+ + ++ + E +L+ DR L + TG+ PL VNI RL+
Sbjct: 602 NPSYMLSEAVEDLKTIREIRSVFDAEVQKLEADRFQLGTGIATTGDNSWPLPVNIRRLVL 661
Query: 225 NAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGP 404
NA++ F V SD+ P +IV V+ L R +V+ D+
Sbjct: 662 NAQKTFKVDFRRPSDMHPMEIVEAVDKLQERLKVVVGDD--------------------- 700
Query: 405 QDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
LS AQ NATL F + +R++LASK VL E+RLTR+AF W
Sbjct: 701 ------YLSMEAQKNATLFFNILLRSALASKRVLKEYRLTREAFEW 740
[216][TOP]
>UniRef100_Q1ACT9 RNA polymerase II largest subunit (Fragment) n=1 Tax=Iresine
herbstii RepID=Q1ACT9_IREHE
Length = 240
Score = 84.3 bits (207), Expect = 5e-15
Identities = 51/163 (31%), Positives = 85/163 (52%)
Frame = +3
Query: 54 YLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAK 233
Y+ + ++D+ + + + E +L+ DR L ++ TG+ PL VN++RL+WNA+
Sbjct: 80 YMLKEHVDDLKTIREFRNVFDAEVQKLEVDRCQLATDIATTGDNSWPLPVNLKRLLWNAQ 139
Query: 234 RIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDE 413
+ F V ++SD+ P +IV V+ L R +V+ ++
Sbjct: 140 KTFKVDMREKSDMHPMEIVEAVDKLQERLKVVPGED------------------------ 175
Query: 414 ALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
LS+ AQ NATL F + +R++LASK VL E +L R+AF W
Sbjct: 176 ---FLSKEAQKNATLFFNILLRSTLASKRVLKEFKLNREAFEW 215
[217][TOP]
>UniRef100_Q1ACS9 RNA polymerase II largest subunit (Fragment) n=1 Tax=Ruschia herrei
RepID=Q1ACS9_9CARY
Length = 240
Score = 84.3 bits (207), Expect = 5e-15
Identities = 53/169 (31%), Positives = 85/169 (50%)
Frame = +3
Query: 36 ESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIER 215
E+ Y+ + ++D+ + + + E +L+ DR L E+ TG+ PL VN++R
Sbjct: 74 ENWEPDYMLKEHVDDLKTIREFRNVFDAEVQKLEADRFQLGTEIATTGDNSWPLPVNLKR 133
Query: 216 LIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSA 395
L+WNA++ F V ++SD+ P +IV V+ L R +V+ D+
Sbjct: 134 LLWNAQKTFKVDMREKSDMHPMEIVEAVDKLQERLKVVPGDD------------------ 175
Query: 396 SGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
LS AQ NATL F + +R++ ASK VL E +L R+AF W
Sbjct: 176 ---------FLSIEAQKNATLFFNILLRSTFASKRVLKEFKLNREAFEW 215
[218][TOP]
>UniRef100_Q6E226 DNA-directed RNA polymerase (Fragment) n=1 Tax=Caenorhabditis
plicata RepID=Q6E226_9PELO
Length = 636
Score = 84.3 bits (207), Expect = 5e-15
Identities = 49/161 (30%), Positives = 82/161 (50%)
Frame = +3
Query: 60 SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRI 239
+ + + +I D E + EWAQL++DR LR ++F G+AK+ L N++RLIWNA++I
Sbjct: 144 TDSVIREIQESEDAIEKVESEWAQLEEDRRLLR-KIFPKGDAKIVLPCNLQRLIWNAQKI 202
Query: 240 FDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEAL 419
F V DLSP ++ V + + +++ ++D
Sbjct: 203 FKVDTRKPVDLSPLHVIDGVREISSKLIIVSGNDD------------------------- 237
Query: 420 KELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
+S AQ NATLL + +R++L SK + + +L +AF W
Sbjct: 238 --ISRQAQYNATLLMNILLRSTLCSKKLCTTSKLNTEAFDW 276
[219][TOP]
>UniRef100_P90678 DNA-directed RNA polymerase (Fragment) n=1 Tax=Aduncospiculum
halicti RepID=P90678_9BILA
Length = 631
Score = 84.3 bits (207), Expect = 5e-15
Identities = 47/161 (29%), Positives = 82/161 (50%)
Frame = +3
Query: 60 SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRI 239
++ + D+ S + + EW QL+ DR LR ++F G+AK+ L N++RLIWNA++I
Sbjct: 140 TEDVIRDVQSSSESIKEAELEWMQLQDDRQLLR-KIFPKGDAKIVLPCNLQRLIWNAQKI 198
Query: 240 FDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEAL 419
F V +DL+P ++++ V + + ++ D+
Sbjct: 199 FHVETRKVTDLNPVRVIQGVREVSKKLIIVGGDD-------------------------- 232
Query: 420 KELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
+S AQ NATLL + VR++L +K + +H+L +AF W
Sbjct: 233 -RISVQAQYNATLLMNILVRSTLCAKAMAEKHKLNAEAFEW 272
[220][TOP]
>UniRef100_A9QMQ0 RNA polymerase 2 (Fragment) n=1 Tax=Pristionchus pacificus
RepID=A9QMQ0_PRIPA
Length = 181
Score = 84.3 bits (207), Expect = 5e-15
Identities = 49/141 (34%), Positives = 75/141 (53%)
Frame = +3
Query: 120 EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRXV 299
EW QL++DR+ LR +F G+AK+ L N++RLIWNA++IF V +DLSP +++ V
Sbjct: 57 EWQQLQEDRELLRM-IFPKGDAKIVLPCNLQRLIWNAQKIFHVEMRKPTDLSPVRVIEGV 115
Query: 300 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 479
+ + ++ ED +S+ AQ NATLL + VR
Sbjct: 116 R-EVSKKLIIVGGED--------------------------RISKQAQYNATLLMNILVR 148
Query: 480 ASLASKVVLSEHRLTRKAFTW 542
++L SK + +HRL +AF W
Sbjct: 149 STLCSKQLAEKHRLNSEAFEW 169
[221][TOP]
>UniRef100_A9QMF6 RNA polymerase 2 (Fragment) n=1 Tax=Pristionchus pacificus
RepID=A9QMF6_PRIPA
Length = 583
Score = 84.3 bits (207), Expect = 5e-15
Identities = 49/141 (34%), Positives = 75/141 (53%)
Frame = +3
Query: 120 EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRXV 299
EW QL++DR+ LR +F G+AK+ L N++RLIWNA++IF V +DLSP +++ V
Sbjct: 127 EWQQLQEDRELLRM-IFPKGDAKIVLPCNLQRLIWNAQKIFHVEMRKPTDLSPVRVIEGV 185
Query: 300 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 479
+ + ++ ED +S+ AQ NATLL + VR
Sbjct: 186 R-EVSKKLIIVGGED--------------------------RISKQAQYNATLLMNILVR 218
Query: 480 ASLASKVVLSEHRLTRKAFTW 542
++L SK + +HRL +AF W
Sbjct: 219 STLCSKQLAEKHRLNSEAFEW 239
[222][TOP]
>UniRef100_Q2PYS0 DNA-directed RNA polymerase (Fragment) n=1 Tax=Entomophthora muscae
RepID=Q2PYS0_9FUNG
Length = 1007
Score = 84.3 bits (207), Expect = 5e-15
Identities = 56/144 (38%), Positives = 77/144 (53%)
Frame = +3
Query: 111 LAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIV 290
LA E+AQL DR+ LR+ VF +GE + P+ VNI+RLI NA+ +F + ++L PS ++
Sbjct: 863 LADEFAQLVSDRNLLRNFVFTSGENEWPMPVNIKRLIRNAQVMFHCHAHRPTNLHPSLVI 922
Query: 291 RXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQV 470
VE LL V+ ++ LSE A NAT+LF+V
Sbjct: 923 STVERLLKGLTVIRGND---------------------------ALSEEANTNATILFKV 955
Query: 471 HVRASLASKVVLSEHRLTRKAFTW 542
VR+ LASK VL E LT +AF W
Sbjct: 956 LVRSILASKRVLEEFHLTTEAFEW 979
[223][TOP]
>UniRef100_A8Q5I6 DNA-directed RNA polymerase n=1 Tax=Malassezia globosa CBS 7966
RepID=A8Q5I6_MALGO
Length = 1607
Score = 84.3 bits (207), Expect = 5e-15
Identities = 52/149 (34%), Positives = 79/149 (53%)
Frame = +3
Query: 96 DVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLS 275
++ +LL E+ QL+ DR LR EVF+T L +NI RL+ NA++IF + SDLS
Sbjct: 728 ELEQLLEGEFEQLEADRKTLRTEVFQTDRVDTYLPLNIARLVLNAQQIFHIDPRKPSDLS 787
Query: 276 PSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNAT 455
P +IV ++ +L+ V+ D+ ++S Q NAT
Sbjct: 788 PFEIVDGLKRVLNNLLVVRGDD---------------------------KISRVMQENAT 820
Query: 456 LLFQVHVRASLASKVVLSEHRLTRKAFTW 542
LLF++H+R+ L SK V+ H LTR+A+ W
Sbjct: 821 LLFKIHLRSFLCSKQVIEVHHLTREAWEW 849
[224][TOP]
>UniRef100_Q71ET9 DNA-directed RNA polymerase (Fragment) n=1 Tax=Pinus nigra
RepID=Q71ET9_9CONI
Length = 1013
Score = 84.0 bits (206), Expect = 6e-15
Identities = 51/170 (30%), Positives = 84/170 (49%)
Frame = +3
Query: 33 QESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIE 212
QE+ N Y+ + D+ + + + E +L+ DR L E+ +G+ PL VN++
Sbjct: 843 QENWNPSYMLPEHVEDLKTIREFQNVFDAEVQKLESDRRQLGMEIAPSGDNSWPLPVNLK 902
Query: 213 RLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGS 392
RLIWN+++ F + SD+ P +IV ++ L R +V+ D+ ++
Sbjct: 903 RLIWNSQKTFKIDARRPSDMHPMEIVEAIDRLQERLKVVPGDDLMSIE------------ 950
Query: 393 ASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
AQ NATL F + +R++ ASK VL E+ LTR+AF W
Sbjct: 951 ---------------AQKNATLFFNILLRSTFASKRVLKEYHLTREAFEW 985
[225][TOP]
>UniRef100_Q010D7 DNA-directed RNA polymerase n=1 Tax=Ostreococcus tauri
RepID=Q010D7_OSTTA
Length = 1673
Score = 84.0 bits (206), Expect = 6e-15
Identities = 54/168 (32%), Positives = 85/168 (50%), Gaps = 2/168 (1%)
Frame = +3
Query: 45 NSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIW 224
N +LS +D+ V E++ EW +L+KDR LR +VF TG+ + L VN++R+IW
Sbjct: 921 NKGWLSNEQASDLAHSTKVREIIDAEWERLQKDRVELR-KVFPTGDPHVHLPVNMKRIIW 979
Query: 225 NAKRIFDVRQ--NDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSAS 398
NA++ + + + +LS + ++ V LL + V+ + ++A
Sbjct: 980 NAQKQYGMYRPGGSEEELSVTHVIESVAELLPKLIVVAGTDPLSIEA------------- 1026
Query: 399 GPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
Q N TLLF HVRA+LA+K VL +H+LTR F W
Sbjct: 1027 --------------QRNGTLLFFAHVRANLAAKRVLKDHKLTRAGFDW 1060
[226][TOP]
>UniRef100_B7SNW5 DNA-directed RNA polymerase (Fragment) n=1 Tax=Asparagus officinalis
RepID=B7SNW5_ASPOF
Length = 1009
Score = 84.0 bits (206), Expect = 6e-15
Identities = 54/163 (33%), Positives = 82/163 (50%)
Frame = +3
Query: 54 YLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAK 233
Y+ + D+ + + + E +L+ DR L ++ TG+ P+ VN++RLIWNA+
Sbjct: 846 YMLPEHVEDLKTIPEFRNVFDAEVQKLEADRFQLGTDIATTGDNTWPMPVNLKRLIWNAQ 905
Query: 234 RIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDE 413
+ F V SD+ P +IV V+ L + RV+ D+
Sbjct: 906 KTFKVDPRRPSDMHPMEIVEAVDKLQEKLRVVPGDD------------------------ 941
Query: 414 ALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
LS AQ NATLLF + +R++ ASK VL E+RLTR+AF W
Sbjct: 942 ---FLSMEAQKNATLLFNILLRSTFASKRVLKEYRLTREAFEW 981
[227][TOP]
>UniRef100_Q25203 DNA-directed RNA polymerase (Fragment) n=1 Tax=Ilyanassa obsoleta
RepID=Q25203_9CAEN
Length = 1343
Score = 84.0 bits (206), Expect = 6e-15
Identities = 51/162 (31%), Positives = 79/162 (48%)
Frame = +3
Query: 57 LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 236
L + + + + E L EW QL DRD R +VF TG+A++ L N++R+IWNA++
Sbjct: 848 LKEDVIKGLRGEHRLIEELESEWLQLISDRDSAR-QVFSTGDARIVLPCNLQRMIWNAQK 906
Query: 237 IFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEA 416
IF + + SDL P +V V L R ++ ++
Sbjct: 907 IFRIDKRKPSDLDPINVVSGVRDLCQRLTIVEGED------------------------- 941
Query: 417 LKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
+S+ A NATLL + +R++L +K V EHRL+ AF W
Sbjct: 942 --MISKQANENATLLMKCLIRSTLCAKRVAEEHRLSEDAFNW 981
[228][TOP]
>UniRef100_A9QMF2 DNA-directed RNA polymerase (Fragment) n=1 Tax=Pelodera teres
RepID=A9QMF2_9PELO
Length = 629
Score = 84.0 bits (206), Expect = 6e-15
Identities = 53/174 (30%), Positives = 87/174 (50%)
Frame = +3
Query: 21 DLHLQESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLA 200
DL + S Y S+ + D+ + + +EW QL++DR LR ++F GE+K+ L
Sbjct: 128 DLSDERSLRRVY-SEDVVRDLLGSSSALKEVEEEWQQLEEDRRLLR-KIFPKGESKVVLP 185
Query: 201 VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLP 380
N++RLIWNA++IF V + L+P ++V+ V L + ++ D+
Sbjct: 186 CNLQRLIWNAQKIFKVETRKVTALNPLRVVQGVRDLSKKLIIVMGDD------------- 232
Query: 381 PDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
+S+ AQ NATLL + +R++L SK + +HRL AF W
Sbjct: 233 --------------RISKQAQYNATLLVNILIRSTLCSKQMSEKHRLNESAFDW 272
[229][TOP]
>UniRef100_A1YIB9 DNA-directed RNA polymerase (Fragment) n=1 Tax=Allomyces macrogynus
RepID=A1YIB9_ALLMA
Length = 1008
Score = 84.0 bits (206), Expect = 6e-15
Identities = 51/149 (34%), Positives = 82/149 (55%)
Frame = +3
Query: 96 DVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLS 275
+V +LL +E+ QL++DR+ LRH +F G+A+ PL NI+R+IWNA+ +F + + S+L
Sbjct: 855 EVQQLLDQEYRQLEEDRERLRH-IFPRGDARWPLPGNIQRIIWNAQNLFKIDKTKPSNLH 913
Query: 276 PSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNAT 455
P +V V L + V+ + ++S AQ NAT
Sbjct: 914 PEYVVNEVRKLCDKLMVIPGTD---------------------------KISVEAQRNAT 946
Query: 456 LLFQVHVRASLASKVVLSEHRLTRKAFTW 542
LL Q+ VR++LA+K V+ E RL ++AF +
Sbjct: 947 LLSQILVRSTLATKRVIEEFRLDKRAFDY 975
[230][TOP]
>UniRef100_Q2TUN6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Ginkgo biloba
RepID=Q2TUN6_GINBI
Length = 1013
Score = 83.6 bits (205), Expect = 8e-15
Identities = 52/169 (30%), Positives = 84/169 (49%)
Frame = +3
Query: 36 ESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIER 215
E+ N Y+ + D+ + + + E +L+ DR L E+ +G+ P+ VN++R
Sbjct: 844 ENWNPGYMLADHVEDLKTIREFRNVFDAEVQKLEADRRQLGTEIAPSGDNSWPMPVNLKR 903
Query: 216 LIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSA 395
LIWNA++ F + SD+ P +IV V+ L R +V+ D+ ++
Sbjct: 904 LIWNAQKTFKIDLRKPSDMHPMEIVEAVDKLQERLKVVPGDDLMSIE------------- 950
Query: 396 SGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
AQ NATL F + +R++ ASK VL E+RLTR+AF W
Sbjct: 951 --------------AQKNATLFFNILLRSTFASKRVLKEYRLTREAFEW 985
[231][TOP]
>UniRef100_B7SNX2 DNA-directed RNA polymerase (Fragment) n=1 Tax=Papaver orientale
RepID=B7SNX2_PAPOR
Length = 1010
Score = 83.6 bits (205), Expect = 8e-15
Identities = 52/163 (31%), Positives = 78/163 (47%)
Frame = +3
Query: 54 YLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAK 233
Y+ + D+ + + + E +L DR L E+ TG+ P+ VN+ RLIWNA+
Sbjct: 847 YMQSDYVEDLKNIREFRHVFDAEVKKLADDRLQLGTEITTTGDNSWPMPVNLRRLIWNAQ 906
Query: 234 RIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDE 413
+ F V SD+ P +IV ++ L R +V+ D+
Sbjct: 907 KTFKVDPRRPSDMHPMEIVEAIDKLQERLKVVPGDD------------------------ 942
Query: 414 ALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
+S AQ NATL F + +R++ ASK VL EH LTR+AF W
Sbjct: 943 ---SMSMEAQKNATLFFNILLRSTFASKRVLKEHHLTREAFDW 982
[232][TOP]
>UniRef100_A9QMS4 DNA-directed RNA polymerase (Fragment) n=1 Tax=Poikilolaimus
oxycercus RepID=A9QMS4_9BILA
Length = 612
Score = 83.6 bits (205), Expect = 8e-15
Identities = 48/157 (30%), Positives = 83/157 (52%)
Frame = +3
Query: 72 LNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVR 251
+ +I + + + EW QLK+DR LR ++F G +K+ L NI+RLIWNA++IF V
Sbjct: 144 VKEIQGNSNSMKEIDAEWEQLKEDRGLLR-KIFPKGGSKVVLPCNIQRLIWNAQKIFRVD 202
Query: 252 QNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELS 431
+ ++LSP ++ + L + +++ D+ ++S
Sbjct: 203 NRNPTELSPLYVIEAIRKLSEKLVIVSGDD---------------------------KIS 235
Query: 432 ETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
+ AQ NATLL + +R++L SK V +HRL ++AF +
Sbjct: 236 QQAQYNATLLMNILIRSTLCSKQVAEKHRLNQEAFEY 272
[233][TOP]
>UniRef100_O35559 DNA-directed RNA polymerase n=1 Tax=Cricetulus griseus
RepID=O35559_CRIGR
Length = 1970
Score = 83.2 bits (204), Expect = 1e-14
Identities = 50/162 (30%), Positives = 84/162 (51%)
Frame = +3
Query: 57 LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 236
L + + D+ S + L +E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++
Sbjct: 934 LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 992
Query: 237 IFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEA 416
IF + SDL K+V V+ L + ++ D+
Sbjct: 993 IFHINPRLPSDLHSIKVVEGVKELSKKLVIVNGDD------------------------- 1027
Query: 417 LKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
LS AQ NATLLF +H+R++L S+ + E RL+ +AF W
Sbjct: 1028 --PLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDW 1067
[234][TOP]
>UniRef100_Q71EU0 DNA-directed RNA polymerase (Fragment) n=1 Tax=Cycas revoluta
RepID=Q71EU0_CYCRE
Length = 1013
Score = 83.2 bits (204), Expect = 1e-14
Identities = 51/169 (30%), Positives = 84/169 (49%)
Frame = +3
Query: 36 ESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIER 215
E+ N Y+ + D+ + + + + +L+ DR L E+ +G+ P+ VN++R
Sbjct: 844 ENWNPSYMLPEHVEDLKTIREFQNVFDAQVQKLEADRRQLGTEIAPSGDNSWPMPVNLKR 903
Query: 216 LIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSA 395
LIWNA++ F + SD+ P +IV V+ L R +V+ D+ ++
Sbjct: 904 LIWNAQKTFKIDLRKPSDMHPMEIVEAVDKLQERLKVVPGDDLMSIE------------- 950
Query: 396 SGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
AQ NATL F + +R++ ASK VL E+RLTR+AF W
Sbjct: 951 --------------AQKNATLFFNILLRSTFASKRVLKEYRLTREAFEW 985
[235][TOP]
>UniRef100_Q71ET8 DNA-directed RNA polymerase (Fragment) n=1 Tax=Welwitschia mirabilis
RepID=Q71ET8_WELMI
Length = 1013
Score = 83.2 bits (204), Expect = 1e-14
Identities = 51/170 (30%), Positives = 84/170 (49%)
Frame = +3
Query: 33 QESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIE 212
QE+ N Y+ + D+ + + + E L+ DR L E+ +G+ PL VN++
Sbjct: 843 QENWNPGYMLPEHIEDLKTIREFQNVCDAEVQHLENDRRQLGTEIAPSGDNSWPLPVNLK 902
Query: 213 RLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGS 392
RLIWNA+++F + SD+ P +I+ ++ L R +V+ ++
Sbjct: 903 RLIWNAQKLFKIDPRKASDMHPMEIIDAIDKLQERLKVVPGND----------------- 945
Query: 393 ASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
LS AQ NATL F + +R++ ASK VL E+ LT++AF W
Sbjct: 946 ----------PLSIEAQKNATLFFNILLRSTFASKRVLKEYHLTKEAFDW 985
[236][TOP]
>UniRef100_Q2TUN7 DNA-directed RNA polymerase (Fragment) n=1 Tax=Podocarpus
macrophyllus RepID=Q2TUN7_9CONI
Length = 1013
Score = 83.2 bits (204), Expect = 1e-14
Identities = 50/170 (29%), Positives = 84/170 (49%)
Frame = +3
Query: 33 QESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIE 212
QE+ N Y+ + D+ + + + E +L+ DR L E+ +G+ P+ VN++
Sbjct: 843 QENWNPIYMLPEHVEDLKTIREFQNVFDAEVQKLESDRRQLGTEIAPSGDNSCPMPVNLK 902
Query: 213 RLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGS 392
RLIWNA++ F + SD+ P +IV ++ L R +V+ D+ ++
Sbjct: 903 RLIWNAQKTFKIDPRKPSDMHPMEIVEAIDRLQERLKVVPGDDLISIE------------ 950
Query: 393 ASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
AQ NATL F + +R++ ASK VL E+ LT++AF W
Sbjct: 951 ---------------AQKNATLFFNILLRSTFASKRVLKEYHLTKEAFEW 985
[237][TOP]
>UniRef100_Q6E224 DNA-directed RNA polymerase (Fragment) n=1 Tax=Caenorhabditis
drosophilae RepID=Q6E224_9PELO
Length = 633
Score = 83.2 bits (204), Expect = 1e-14
Identities = 48/163 (29%), Positives = 82/163 (50%)
Frame = +3
Query: 54 YLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAK 233
Y S+ + D++ D E + EW QL++DR LR ++F G+AK+ L N++RL+WNA+
Sbjct: 141 YYSEDVIRDLNESEDAIEKVESEWTQLEEDRRLLR-KIFPKGDAKIVLPCNLQRLMWNAQ 199
Query: 234 RIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDE 413
+IF V +LSP ++ V L + ++ +D
Sbjct: 200 KIFKVDMRKPVNLSPLHVIDGVRELSKKLVIVGGSDD----------------------- 236
Query: 414 ALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
+S+ AQ NATLL + +R++L +K + + +L +AF W
Sbjct: 237 ----ISKQAQYNATLLMNILLRSTLCTKKLCTSSKLNTEAFDW 275
[238][TOP]
>UniRef100_Q6E223 RNA polymerase 2 (Fragment) n=1 Tax=Caenorhabditis sp. DF5070
RepID=Q6E223_9PELO
Length = 606
Score = 83.2 bits (204), Expect = 1e-14
Identities = 48/163 (29%), Positives = 82/163 (50%)
Frame = +3
Query: 54 YLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAK 233
Y S+ + D++ D E + EW QL++DR LR ++F G+AK+ L N++RL+WNA+
Sbjct: 125 YYSEDVIRDLNESPDAIEKVESEWTQLEEDRRLLR-KIFPKGDAKIVLPCNLQRLMWNAQ 183
Query: 234 RIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDE 413
+IF V +LSP ++ V L + ++ +D
Sbjct: 184 KIFKVDMRKPVNLSPLHVIDGVRELSKKLVIVGGSDD----------------------- 220
Query: 414 ALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
+S+ AQ NATLL + +R++L +K + + +L +AF W
Sbjct: 221 ----ISKQAQYNATLLMNILLRSTLCTKKLCTSSKLNTEAFDW 259
[239][TOP]
>UniRef100_Q25151 DNA-directed RNA polymerase (Fragment) n=1 Tax=Helobdella stagnalis
RepID=Q25151_9ANNE
Length = 1337
Score = 83.2 bits (204), Expect = 1e-14
Identities = 50/163 (30%), Positives = 83/163 (50%)
Frame = +3
Query: 54 YLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAK 233
YL + L ++ +V + E+ QL +DR +R ++F +G++K+ L N++RLIWNA+
Sbjct: 840 YLDEDILKSLNGDANVIAEVESEYKQLLEDRTAIR-QIFPSGDSKIVLPCNLQRLIWNAQ 898
Query: 234 RIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDE 413
+IF + S+L P KI+ V L + ++ ++
Sbjct: 899 KIFRIHTRKPSNLHPVKIIEDVRELSKKFMIVKGED------------------------ 934
Query: 414 ALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
LS+TA NATLL + VR++L SK V+ E L+ +AF W
Sbjct: 935 ---RLSKTANTNATLLMNILVRSTLCSKRVIEEFHLSTEAFEW 974
[240][TOP]
>UniRef100_O01375 DNA-directed RNA polymerase (Fragment) n=1 Tax=Teratorhabditis
palmarum RepID=O01375_9BILA
Length = 631
Score = 83.2 bits (204), Expect = 1e-14
Identities = 49/142 (34%), Positives = 76/142 (53%)
Frame = +3
Query: 117 KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRX 296
+EW QL++DR LR ++F G+ K+ L N++RLIWNA++IF + +DLSP +++
Sbjct: 159 EEWQQLEEDRRLLR-KIFPKGDNKVVLPCNLQRLIWNAQKIFKIETRKVTDLSPVRVIEG 217
Query: 297 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 476
+ L + V+ S ED +S+ AQ NATLL + +
Sbjct: 218 IR-ELSKKLVIVSGED--------------------------RISKQAQYNATLLMNILI 250
Query: 477 RASLASKVVLSEHRLTRKAFTW 542
R++L SK V S H+L +AF W
Sbjct: 251 RSTLCSKRVASMHKLNNEAFDW 272
[241][TOP]
>UniRef100_A9QMR5 DNA-directed RNA polymerase (Fragment) n=1 Tax=Rhabditoides
inermiformis RepID=A9QMR5_9BILA
Length = 524
Score = 83.2 bits (204), Expect = 1e-14
Identities = 50/170 (29%), Positives = 88/170 (51%)
Frame = +3
Query: 33 QESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIE 212
+++ N Y + + D+ + + + EW QL++DR LR ++F G++K+ L N++
Sbjct: 126 EKALNKVYTADV-VRDLQESPEALKEVEAEWLQLEEDRRLLR-KIFPKGDSKVVLPCNLQ 183
Query: 213 RLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGS 392
RLIWNA++IF V ++S L+P +++ V + + V+ ED
Sbjct: 184 RLIWNAQKIFHVETREKSSLNPLRVIAGVREMSQKL-VIVGGED---------------- 226
Query: 393 ASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
+S+ AQ NATLL + VR++L SK + ++RL +AF W
Sbjct: 227 ----------RISKQAQYNATLLMNILVRSTLCSKQMADKYRLNAQAFEW 266
[242][TOP]
>UniRef100_A9QMG6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Teratorhabditis
palmarum RepID=A9QMG6_9BILA
Length = 633
Score = 83.2 bits (204), Expect = 1e-14
Identities = 49/142 (34%), Positives = 76/142 (53%)
Frame = +3
Query: 117 KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRX 296
+EW QL++DR LR ++F G+ K+ L N++RLIWNA++IF + +DLSP +++
Sbjct: 163 EEWQQLEEDRRLLR-KIFPKGDNKVVLPCNLQRLIWNAQKIFKIETRKVTDLSPVRVIEG 221
Query: 297 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 476
+ L + V+ S ED +S+ AQ NATLL + +
Sbjct: 222 IR-ELSKKLVIVSGED--------------------------RISKQAQYNATLLMNILI 254
Query: 477 RASLASKVVLSEHRLTRKAFTW 542
R++L SK V S H+L +AF W
Sbjct: 255 RSTLCSKRVASMHKLNNEAFDW 276
[243][TOP]
>UniRef100_A9QMF4 RNA polymerase 2 (Fragment) n=1 Tax=Rhabditoides inermiformis
RepID=A9QMF4_9BILA
Length = 597
Score = 83.2 bits (204), Expect = 1e-14
Identities = 50/170 (29%), Positives = 88/170 (51%)
Frame = +3
Query: 33 QESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIE 212
+++ N Y + + D+ + + + EW QL++DR LR ++F G++K+ L N++
Sbjct: 94 EKALNKVYTADV-VRDLQESPEALKEVEAEWLQLEEDRRLLR-KIFPKGDSKVVLPCNLQ 151
Query: 213 RLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGS 392
RLIWNA++IF V ++S L+P +++ V + + V+ ED
Sbjct: 152 RLIWNAQKIFHVETREKSSLNPLRVIAGVREMSQKL-VIVGGED---------------- 194
Query: 393 ASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
+S+ AQ NATLL + VR++L SK + ++RL +AF W
Sbjct: 195 ----------RISKQAQYNATLLMNILVRSTLCSKQMADKYRLNAQAFEW 234
[244][TOP]
>UniRef100_Q2PYR0 DNA-directed RNA polymerase (Fragment) n=1 Tax=Boothiomyces
macroporosum RepID=Q2PYR0_9FUNG
Length = 999
Score = 83.2 bits (204), Expect = 1e-14
Identities = 53/161 (32%), Positives = 84/161 (52%), Gaps = 1/161 (0%)
Frame = +3
Query: 63 QAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEA-KLPLAVNIERLIWNAKRI 239
Q+ ND+ + ++L +E+ QL KDR LR+ +FK K L VN+ERLIWNA
Sbjct: 838 QSTYNDLINNPASQDILDREYNQLLKDRATLRNVIFKNSAIDKWTLPVNLERLIWNACHT 897
Query: 240 FDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEAL 419
F + ++ +DL+P +++ V L+ V+ ++
Sbjct: 898 FGIDRSKPTDLNPLHVIKSVNELMENLLVVRGND-------------------------- 931
Query: 420 KELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
+LS AQ NATLLF + +R++LASK ++ E RL+ +AF W
Sbjct: 932 -QLSIEAQKNATLLFSILLRSTLASKRLIEEFRLSTQAFDW 971
[245][TOP]
>UniRef100_B7SNW8 DNA-directed RNA polymerase (Fragment) n=1 Tax=Drimys winteri
RepID=B7SNW8_DRIWI
Length = 1010
Score = 82.8 bits (203), Expect = 1e-14
Identities = 53/166 (31%), Positives = 81/166 (48%)
Frame = +3
Query: 45 NSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIW 224
N Y+ + D+ + + + E +L+ DR L E+ TG+ P+ VN++RLIW
Sbjct: 844 NPSYMVPEHVEDLKTIREFRNVFDAEVQKLEADRYQLGSEIATTGDNSWPMPVNLKRLIW 903
Query: 225 NAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGP 404
NA++ F V S + P +IV V+ L R +V+ D+
Sbjct: 904 NAQKTFKVDLRRPSGMHPMEIVEAVDKLQERLKVVPGDD--------------------- 942
Query: 405 QDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
+S AQ NATL F + +R++ ASK VL E+RLTR+AF W
Sbjct: 943 ------PISMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFEW 982
[246][TOP]
>UniRef100_Q6JTX1 RNA polymerase II largest subunit (Fragment) n=1 Tax=Isohypsibius
elegans RepID=Q6JTX1_9BILA
Length = 304
Score = 82.8 bits (203), Expect = 1e-14
Identities = 50/173 (28%), Positives = 90/173 (52%), Gaps = 4/173 (2%)
Frame = +3
Query: 36 ESSNSPYLSQA----ALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 203
++SN YL + +N I + V + L +E+ Q+K+DR+ +R ++F TG++++ L
Sbjct: 54 QTSNERYLRRLYEPDIVNSIMTDAGVPQALEQEFEQMKRDREIIR-KIFPTGDSRVVLPC 112
Query: 204 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPP 383
N++R++WNA++IF ++ +DL P ++V + L+ + V+ ED
Sbjct: 113 NLQRMVWNAQKIFHIKGRGTTDLHPVRVVEGLNELMKKL-VIVKGED------------- 158
Query: 384 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
LS AQ NAT+L +R++L SK + E+ L +AF W
Sbjct: 159 -------------RLSREAQENATILMNTMLRSTLCSKRMAEEYHLNTEAFEW 198
[247][TOP]
>UniRef100_A9QMD9 RNA polymerase 2 (Fragment) n=1 Tax=Protorhabditis sp. JB122
RepID=A9QMD9_9BILA
Length = 595
Score = 82.8 bits (203), Expect = 1e-14
Identities = 50/163 (30%), Positives = 84/163 (51%)
Frame = +3
Query: 54 YLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAK 233
+ S+ + ++ + + EWAQL++DR LR ++F G+AK+ L N++RLIWNA+
Sbjct: 102 HYSEDVVRELMGSPEALREVEGEWAQLEEDRRLLR-KIFPNGDAKIVLPCNLQRLIWNAQ 160
Query: 234 RIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDE 413
+IF + +DLSP +++ V L R ++ S ED
Sbjct: 161 KIFHIELRKPTDLSPLRVIEGVR-ELSRKLIIVSGED----------------------- 196
Query: 414 ALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
+S+ AQ NATLL + +R++L SK + ++L +AF W
Sbjct: 197 ---RISKQAQYNATLLMNILLRSTLCSKKMGMSYKLDSEAFEW 236
[248][TOP]
>UniRef100_A8PU11 DNA-directed RNA polymerase n=1 Tax=Brugia malayi RepID=A8PU11_BRUMA
Length = 1943
Score = 82.8 bits (203), Expect = 1e-14
Identities = 49/169 (28%), Positives = 86/169 (50%)
Frame = +3
Query: 36 ESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIER 215
E S ++ + ++ + + + EW QL++DR LR ++F G+AK+ L N++R
Sbjct: 992 EKSLRKLYTENVVRELQGSAEALKEVEAEWGQLEEDRRLLR-KIFPKGDAKIVLPCNLQR 1050
Query: 216 LIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSA 395
+IWNA++IF V +DL+P +++ V+ L + V+ S ED
Sbjct: 1051 MIWNAQKIFRVELRKPTDLNPLRVIEGVK-ELSKKLVIVSGED----------------- 1092
Query: 396 SGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
+S+ AQ NATLL + +R++L +K + +HRL + F W
Sbjct: 1093 ---------RISKQAQYNATLLMNILLRSTLCAKRMAEKHRLNSEGFEW 1132
[249][TOP]
>UniRef100_Q2PYS5 DNA-directed RNA polymerase (Fragment) n=1 Tax=Hyaloraphidium
curvatum RepID=Q2PYS5_HYACU
Length = 1002
Score = 82.8 bits (203), Expect = 1e-14
Identities = 55/147 (37%), Positives = 78/147 (53%)
Frame = +3
Query: 96 DVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLS 275
+ E + E+ QL+ DR LR ++F +GE+ PL N+ RLI NA+ F + ++DL
Sbjct: 853 ETQEAVDGEFEQLENDRKVLRKDIFPSGESSWPLPGNLRRLIDNARIQFGLSDRAKTDLL 912
Query: 276 PSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNAT 455
P+KIV+ V LL V+ + LS AQ NAT
Sbjct: 913 PTKIVQDVRALLAECVVVPGTDG---------------------------LSRQAQANAT 945
Query: 456 LLFQVHVRASLASKVVLSEHRLTRKAF 536
LL+Q+ VR++LASK VLSE+RLT +AF
Sbjct: 946 LLWQILVRSTLASKRVLSEYRLTSEAF 972
[250][TOP]
>UniRef100_Q71ET7 DNA-directed RNA polymerase (Fragment) n=1 Tax=Zea mays
RepID=Q71ET7_MAIZE
Length = 1009
Score = 82.4 bits (202), Expect = 2e-14
Identities = 49/163 (30%), Positives = 82/163 (50%)
Frame = +3
Query: 54 YLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAK 233
Y+ ++D+ + + + E +L+ DR L E+ TG+ P+ VN++RLIWNA+
Sbjct: 846 YMLPEHVDDLKTIREFRNVFEAEVQKLEADRYQLGSEITTTGDNSWPMPVNLKRLIWNAQ 905
Query: 234 RIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDE 413
+ F + SD+ P +IV ++ L R +V+ D+ ++
Sbjct: 906 KTFKIDFRRPSDMHPMEIVEAIDKLQERLKVVPGDDAMSIE------------------- 946
Query: 414 ALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
AQ NATL F + +R++ ASK VL E+RLT++AF W
Sbjct: 947 --------AQKNATLFFNILLRSTFASKRVLKEYRLTKEAFEW 981