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[1][TOP]
>UniRef100_O04142 DNA-directed RNA polymerase (Fragment) n=1 Tax=Porphyra yezoensis
RepID=O04142_PORYE
Length = 1685
Score = 316 bits (810), Expect(2) = 1e-91
Identities = 164/164 (100%), Positives = 164/164 (100%)
Frame = +1
Query: 55 FKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDA 234
FKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDA
Sbjct: 882 FKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDA 941
Query: 235 EVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTR 414
EVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTR
Sbjct: 942 EVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTR 1001
Query: 415 KAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
KAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT
Sbjct: 1002 KAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 1045
Score = 44.7 bits (104), Expect(2) = 1e-91
Identities = 19/21 (90%), Positives = 20/21 (95%)
Frame = +3
Query: 3 QGVGTAEEGPRLPTPRGFQDG 65
QGVGTAEEGPRLPTPRGF+ G
Sbjct: 865 QGVGTAEEGPRLPTPRGFKTG 885
[2][TOP]
>UniRef100_O09451 DNA-directed RNA polymerase (Fragment) n=1 Tax=Bonnemaisonia hamifera
RepID=O09451_9FLOR
Length = 1732
Score = 171 bits (434), Expect = 2e-41
Identities = 91/183 (49%), Positives = 122/183 (66%), Gaps = 3/183 (1%)
Frame = +1
Query: 7 EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
E+ Q++ DR LR + KTGE+K PLAVN++R+IWNAK+ ++ + SDL P ++++GV
Sbjct: 849 EFQQIEADRKLLRDYIIKTGESKRPLAVNVDRVIWNAKQEHNIHADSVSDLKPDQVLKGV 908
Query: 187 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEA---LKELSETAQLNATLLFQV 357
+LL RTRVL ++A ++ A E + P DE + L + AQ NATLLFQ+
Sbjct: 909 SMLLKRTRVLVLGDEAALENAALEPGMEEDDEGNPIDEKPTMVDPLMKEAQENATLLFQI 968
Query: 358 HVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMT 537
H+R+ LA K ++ HRLT KAF WLL E+ENRF GE +GA AAQSIGEPATQMT
Sbjct: 969 HMRSMLACKKLIQLHRLTFKAFLWLLGEVENRFMMCRVAPGENIGAIAAQSIGEPATQMT 1028
Query: 538 LNT 546
LNT
Sbjct: 1029 LNT 1031
[3][TOP]
>UniRef100_Q9AXN0 DNA-directed RNA polymerase n=1 Tax=Glaucosphaera vacuolata
RepID=Q9AXN0_9RHOD
Length = 1746
Score = 169 bits (428), Expect = 1e-40
Identities = 95/193 (49%), Positives = 125/193 (64%), Gaps = 13/193 (6%)
Frame = +1
Query: 7 EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
E+AQ+K DRD L+ E+ ++ E+K PLAVNI+RLIWN K +F++RQ+ SDL+P I++GV
Sbjct: 925 EFAQIKLDRDRLQREIIRSRESKWPLAVNIDRLIWNVKTLFNIRQDSVSDLNPRDILKGV 984
Query: 187 ELLLHRTRVLT-------------SDEDAEVDAIAREMLPPDGSASGPQDEALKELSETA 327
++LL R V+ D+ AEVD + ++L+ A
Sbjct: 985 QILLSRCNVVALPPKSIKLLDEGDGDQVAEVDT----------------NSVSRQLAVEA 1028
Query: 328 QLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQ 507
Q NATLL+ +H+RA LASKV+L E+RL +KAF LL EIENRF A P GEM+GA A Q
Sbjct: 1029 QENATLLWSIHIRAFLASKVILKEYRLDKKAFMHLLGEIENRFLHAKCPPGEMIGAVAPQ 1088
Query: 508 SIGEPATQMTLNT 546
SIGEPATQMTLNT
Sbjct: 1089 SIGEPATQMTLNT 1101
[4][TOP]
>UniRef100_Q9AXN1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Botryocladia
uvarioides RepID=Q9AXN1_9FLOR
Length = 1712
Score = 164 bits (415), Expect = 4e-39
Identities = 87/180 (48%), Positives = 125/180 (69%)
Frame = +1
Query: 7 EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
E+ ++++DRD LR+ + K+GEAK P+AVNI+R+IWNAK+ ++R + SDL+P ++ +G+
Sbjct: 850 EFQRIREDRDLLRNFIAKSGEAKRPMAVNIDRIIWNAKQAHNIRPDSVSDLTPVQVWKGI 909
Query: 187 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
++LL RTRV+ +D + + + + +G + A ET Q NAT++FQ+HVR
Sbjct: 910 KMLLKRTRVVEIGDDQDDEDVDDGVTDENGEMIDRKPVADPLTLET-QENATMIFQIHVR 968
Query: 367 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
+ LA K V+ HRL AF W+L EIENRF A+A GE +GA AAQSIGEPATQMTLNT
Sbjct: 969 SMLACKQVMVRHRLDINAFLWILGEIENRFLGAIAAPGENIGAIAAQSIGEPATQMTLNT 1028
[5][TOP]
>UniRef100_UPI000179348F PREDICTED: similar to DNA-directed RNA polymerase II subunit RPB1
(RNA polymerase II subunit B1) (DNA-directed RNA
polymerase III largest subunit) n=1 Tax=Acyrthosiphon
pisum RepID=UPI000179348F
Length = 1862
Score = 151 bits (381), Expect = 3e-35
Identities = 87/181 (48%), Positives = 115/181 (63%)
Frame = +1
Query: 4 KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
KEW QL DRD LR E+F +GE+K+ L N++R+IWN ++IF + + +DL+P K+V G
Sbjct: 947 KEWEQLTNDRDTLR-EIFPSGESKVVLPCNLKRMIWNVQKIFHINKRGPTDLNPIKVVNG 1005
Query: 184 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
V+ LL + V+ + ED ELS+ A NATLLFQ V
Sbjct: 1006 VKKLLDKC-VIVAGED--------------------------ELSKKANKNATLLFQCLV 1038
Query: 364 RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
R++L +K+V RL+ +AF WL+ EIENRF+QA A GEMVGA AAQS+GEPATQMTLN
Sbjct: 1039 RSTLCTKLVSENFRLSSEAFEWLVGEIENRFKQAQAQPGEMVGALAAQSLGEPATQMTLN 1098
Query: 544 T 546
T
Sbjct: 1099 T 1099
[6][TOP]
>UniRef100_Q84KP6 DNA-directed RNA polymerase n=1 Tax=Cyanidioschyzon merolae
RepID=Q84KP6_CYAME
Length = 1819
Score = 150 bits (378), Expect = 8e-35
Identities = 91/181 (50%), Positives = 109/181 (60%)
Frame = +1
Query: 4 KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
+E+ QL DR+ L VF TGEAK PL VN++RLI N + IF ++ + SDL P +I++G
Sbjct: 945 EEYQQLLADREQLC-AVFPTGEAKWPLMVNVQRLIQNCRSIFGIQHDTLSDLHPRQIIQG 1003
Query: 184 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
V +LL R V+ D+ ELS AQ NA LLF HV
Sbjct: 1004 VRVLLQRCVVVPGDD---------------------------ELSREAQRNAVLLFAAHV 1036
Query: 364 RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
RA LA+K VL HRL KAF WLL EIE RF +A A GEMVGA AAQS+GEPATQMTLN
Sbjct: 1037 RAELATKRVLQIHRLNSKAFAWLLGEIETRFVRARATPGEMVGAVAAQSLGEPATQMTLN 1096
Query: 544 T 546
T
Sbjct: 1097 T 1097
[7][TOP]
>UniRef100_UPI000179338A PREDICTED: similar to DNA-directed RNA polymerase II subunit RPB1
(RNA polymerase II subunit B1) (DNA-directed RNA
polymerase III largest subunit) n=1 Tax=Acyrthosiphon
pisum RepID=UPI000179338A
Length = 1862
Score = 148 bits (374), Expect = 2e-34
Identities = 82/181 (45%), Positives = 114/181 (62%)
Frame = +1
Query: 4 KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
+EW QL DRD LR E+F +GE+K+ L N++R+IWN ++IF + + ++DL+P K++ G
Sbjct: 947 REWEQLTTDRDTLR-EIFPSGESKVVLPCNLKRMIWNVQKIFHINKRGQTDLNPVKVING 1005
Query: 184 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
V+ LL + ++ + ELS+ A NATLLFQ V
Sbjct: 1006 VKELLDKCVIVAGGD---------------------------ELSKKANHNATLLFQCLV 1038
Query: 364 RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
R++L +K+V RL+ +AF WL+ EIENRF+QA A GEMVGA AAQS+GEPATQMTLN
Sbjct: 1039 RSTLCTKLVSERFRLSSEAFEWLIGEIENRFKQAQAQPGEMVGALAAQSLGEPATQMTLN 1098
Query: 544 T 546
T
Sbjct: 1099 T 1099
[8][TOP]
>UniRef100_UPI000051A77E PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
isoform 2 n=1 Tax=Apis mellifera RepID=UPI000051A77E
Length = 1422
Score = 148 bits (374), Expect = 2e-34
Identities = 83/181 (45%), Positives = 112/181 (61%)
Frame = +1
Query: 4 KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
+EW QL KDR LR E+F +GE+K+ L N++R+IWN ++IF + + +DLSP K+++G
Sbjct: 946 REWEQLNKDRAVLR-EIFPSGESKVVLPCNLQRMIWNVQKIFHINKRAPTDLSPMKVIQG 1004
Query: 184 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
V+ LL + ++ D+ LS+ A NATLLFQ V
Sbjct: 1005 VKDLLDKCIIVAGDD---------------------------RLSKQANENATLLFQCLV 1037
Query: 364 RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
R++L +K V E RL+ +AF WL+ EIE RFQQA GEMVGA AAQS+GEPATQMTLN
Sbjct: 1038 RSTLCTKCVSEEFRLSSEAFEWLIGEIETRFQQAQVSPGEMVGALAAQSLGEPATQMTLN 1097
Query: 544 T 546
T
Sbjct: 1098 T 1098
[9][TOP]
>UniRef100_A9UEE2 DNA-directed RNA polymerase (Fragment) n=1 Tax=Cephaloboides cf.
armata SB363 RepID=A9UEE2_9BILA
Length = 475
Score = 148 bits (373), Expect = 3e-34
Identities = 83/180 (46%), Positives = 113/180 (62%)
Frame = +1
Query: 7 EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
EWAQL++DR LR ++F TG+AK+ L N++RLIWNA++IF V +DL+P +++ G+
Sbjct: 154 EWAQLEEDRRLLR-KIFPTGDAKIVLPCNLQRLIWNAQKIFHVETRKPTDLNPLRVIEGI 212
Query: 187 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
L + V+ S ED +S+ AQ NATLL + +R
Sbjct: 213 RELSTKL-VIVSGED--------------------------RISQQAQYNATLLMNILIR 245
Query: 367 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
++L SK + S H+L +AF WLL EIE RF+QA+A GEMVGA AAQS+GEPATQMTLNT
Sbjct: 246 STLCSKKMASTHKLNSEAFEWLLGEIETRFKQAIAQPGEMVGALAAQSLGEPATQMTLNT 305
[10][TOP]
>UniRef100_A9QMT2 RNA polymerase 2 (Fragment) n=1 Tax=Pellioditis typica
RepID=A9QMT2_9PELO
Length = 488
Score = 148 bits (373), Expect = 3e-34
Identities = 80/181 (44%), Positives = 113/181 (62%)
Frame = +1
Query: 4 KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
KEWAQL++DR LR ++F TG AK+ L N++RLIWNA++IF V +DL+P +++ G
Sbjct: 145 KEWAQLEEDRRLLR-KIFPTGNAKIVLPCNLQRLIWNAQKIFHVETRKPTDLNPLRVIEG 203
Query: 184 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
V L + +++ D+ +S+ AQ NATLL + +
Sbjct: 204 VRELSEKLVIVSGDD---------------------------RISKQAQYNATLLMNILI 236
Query: 364 RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
R++L SK + S +RL +AF W+L E+E RF+QA+A GEMVGA AAQS+GEPATQMTLN
Sbjct: 237 RSTLCSKKMASTYRLNSEAFEWMLGEVETRFKQAIAQPGEMVGALAAQSLGEPATQMTLN 296
Query: 544 T 546
T
Sbjct: 297 T 297
[11][TOP]
>UniRef100_A9QME0 DNA-directed RNA polymerase (Fragment) n=1 Tax=Pellioditis typica
RepID=A9QME0_9PELO
Length = 633
Score = 148 bits (373), Expect = 3e-34
Identities = 80/181 (44%), Positives = 113/181 (62%)
Frame = +1
Query: 4 KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
KEWAQL++DR LR ++F TG AK+ L N++RLIWNA++IF V +DL+P +++ G
Sbjct: 159 KEWAQLEEDRRLLR-KIFPTGNAKIVLPCNLQRLIWNAQKIFHVETRKPTDLNPLRVIEG 217
Query: 184 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
V L + +++ D+ +S+ AQ NATLL + +
Sbjct: 218 VRELSEKLVIVSGDD---------------------------RISKQAQYNATLLMNILI 250
Query: 364 RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
R++L SK + S +RL +AF W+L E+E RF+QA+A GEMVGA AAQS+GEPATQMTLN
Sbjct: 251 RSTLCSKKMASTYRLNSEAFEWMLGEVETRFKQAIAQPGEMVGALAAQSLGEPATQMTLN 310
Query: 544 T 546
T
Sbjct: 311 T 311
[12][TOP]
>UniRef100_UPI0000D5670C PREDICTED: similar to GA13798-PA n=1 Tax=Tribolium castaneum
RepID=UPI0000D5670C
Length = 2007
Score = 145 bits (367), Expect = 1e-33
Identities = 83/180 (46%), Positives = 114/180 (63%)
Frame = +1
Query: 7 EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
EW QL+KDR+ LR ++F +GE+K+ L N++R+IWN ++IF + + +DLSP ++++GV
Sbjct: 951 EWEQLQKDREALR-QIFPSGESKVVLPCNLQRMIWNVQKIFHINKRAPTDLSPLRVIQGV 1009
Query: 187 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
LL++ V+ + ED LS+ A NATLLFQ VR
Sbjct: 1010 RELLNKC-VIVAGED--------------------------RLSKQANENATLLFQCLVR 1042
Query: 367 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
++L +K V E RL+ +AF WL+ EIE RFQQA GEMVGA AAQS+GEPATQMTLNT
Sbjct: 1043 STLCTKCVSEEFRLSTEAFEWLIGEIETRFQQAQVNPGEMVGALAAQSLGEPATQMTLNT 1102
[13][TOP]
>UniRef100_A9QMF6 RNA polymerase 2 (Fragment) n=1 Tax=Pristionchus pacificus
RepID=A9QMF6_PRIPA
Length = 583
Score = 145 bits (366), Expect = 2e-33
Identities = 82/180 (45%), Positives = 110/180 (61%)
Frame = +1
Query: 7 EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
EW QL++DR+ LR +F G+AK+ L N++RLIWNA++IF V +DLSP +++ GV
Sbjct: 127 EWQQLQEDRELLRM-IFPKGDAKIVLPCNLQRLIWNAQKIFHVEMRKPTDLSPVRVIEGV 185
Query: 187 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
+ + ++ ED +S+ AQ NATLL + VR
Sbjct: 186 REVSKKL-IIVGGED--------------------------RISKQAQYNATLLMNILVR 218
Query: 367 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
++L SK + +HRL +AF WLL EIE RFQQA+A GEMVGA AAQS+GEPATQMTLNT
Sbjct: 219 STLCSKQLAEKHRLNSEAFEWLLGEIETRFQQAIAQPGEMVGALAAQSLGEPATQMTLNT 278
[14][TOP]
>UniRef100_P35084 DNA-directed RNA polymerase II subunit rpb1 n=1 Tax=Dictyostelium
discoideum RepID=RPB1_DICDI
Length = 1727
Score = 145 bits (366), Expect = 2e-33
Identities = 82/181 (45%), Positives = 112/181 (61%)
Frame = +1
Query: 4 KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
KE+ ++K DR LR+E+ +GEA PL VN+ RLI NA+++F++ SDL+P+ +V
Sbjct: 940 KEFERIKSDRSLLRNEIIPSGEANWPLPVNLRRLINNAQKLFNIDIRRVSDLNPAVVVLE 999
Query: 184 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
+E L+ R +++ + + E DE NAT+LF + V
Sbjct: 1000 IEKLVARLKIIATADTTE------------------DDENFNRAWAEVYFNATMLFSILV 1041
Query: 364 RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
R++ ASK VL+E RLT KAF W+ EIE++F QALA GEMVGA AAQSIGEPATQMTLN
Sbjct: 1042 RSTFASKRVLTEFRLTEKAFLWVCGEIESKFLQALAHPGEMVGALAAQSIGEPATQMTLN 1101
Query: 544 T 546
T
Sbjct: 1102 T 1102
[15][TOP]
>UniRef100_Q6GYH6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Prodontorhabditis
wirthi RepID=Q6GYH6_9BILA
Length = 630
Score = 145 bits (365), Expect = 2e-33
Identities = 80/180 (44%), Positives = 111/180 (61%)
Frame = +1
Query: 7 EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
EWAQL++DR LR ++F TG AK+ L N++RLIWNA++IF V + L+P K+++GV
Sbjct: 166 EWAQLEEDRQLLR-KIFPTGNAKIVLPCNLQRLIWNAQKIFHVEMRKPTTLNPMKVIQGV 224
Query: 187 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
L + ++ ++ +S+ AQ NATLL + +R
Sbjct: 225 RELSKKLIIVNGED---------------------------RISKQAQYNATLLTNILIR 257
Query: 367 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
++L SK + S ++L +AF WLL EIENRFQ A+A GEMVGA AAQS+GEPATQMTLNT
Sbjct: 258 STLCSKKMASTYKLDSEAFDWLLGEIENRFQSAIAQPGEMVGALAAQSLGEPATQMTLNT 317
[16][TOP]
>UniRef100_UPI00019270E9 PREDICTED: similar to DNA-directed RNA polymerase II subunit RPB1
isoform 2 n=1 Tax=Hydra magnipapillata
RepID=UPI00019270E9
Length = 2014
Score = 144 bits (364), Expect = 3e-33
Identities = 81/181 (44%), Positives = 113/181 (62%)
Frame = +1
Query: 4 KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
+E+ QLK DR+ LR+ +F G K+ L V + RLIWN++++F V ++DLSP K++
Sbjct: 954 EEFRQLKDDREMLRN-IFPNGNKKVNLPVKLSRLIWNSQKMFKVNLRAQTDLSPLKVIND 1012
Query: 184 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
++ L R V+ ++ +LS+ AQLNAT+LFQ+H+
Sbjct: 1013 IKDLTKRLLVVKGED---------------------------KLSKEAQLNATMLFQIHL 1045
Query: 364 RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
R++L SK V+ E RLT +AF WLL E+E+RF A A GEMVGA AAQS+GEPATQMTLN
Sbjct: 1046 RSTLCSKRVIEEFRLTSEAFDWLLGEVESRFNLAQAQPGEMVGALAAQSLGEPATQMTLN 1105
Query: 544 T 546
T
Sbjct: 1106 T 1106
[17][TOP]
>UniRef100_UPI00019270BB PREDICTED: similar to DNA-directed RNA polymerase II subunit RPB1
isoform 1 n=1 Tax=Hydra magnipapillata
RepID=UPI00019270BB
Length = 2041
Score = 144 bits (364), Expect = 3e-33
Identities = 81/181 (44%), Positives = 113/181 (62%)
Frame = +1
Query: 4 KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
+E+ QLK DR+ LR+ +F G K+ L V + RLIWN++++F V ++DLSP K++
Sbjct: 955 EEFRQLKDDREMLRN-IFPNGNKKVNLPVKLSRLIWNSQKMFKVNLRAQTDLSPLKVIND 1013
Query: 184 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
++ L R V+ ++ +LS+ AQLNAT+LFQ+H+
Sbjct: 1014 IKDLTKRLLVVKGED---------------------------KLSKEAQLNATMLFQIHL 1046
Query: 364 RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
R++L SK V+ E RLT +AF WLL E+E+RF A A GEMVGA AAQS+GEPATQMTLN
Sbjct: 1047 RSTLCSKRVIEEFRLTSEAFDWLLGEVESRFNLAQAQPGEMVGALAAQSLGEPATQMTLN 1106
Query: 544 T 546
T
Sbjct: 1107 T 1107
[18][TOP]
>UniRef100_Q1WKU2 Putative RNA polymerase II 215 kD subunit (Fragment) n=1
Tax=Drosophila simulans RepID=Q1WKU2_DROSI
Length = 746
Score = 144 bits (364), Expect = 3e-33
Identities = 80/180 (44%), Positives = 112/180 (62%)
Frame = +1
Query: 7 EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
EW +L DRD LR ++F GE+K+ L N++R+IWN ++IF + + +DLSP ++++GV
Sbjct: 89 EWDRLVSDRDSLR-QIFPNGESKVVLPCNLQRMIWNVQKIFHINKRLPTDLSPIRVIKGV 147
Query: 187 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
+ LL R ++T ++ +S+ A NATLLFQ +R
Sbjct: 148 KTLLERCVIVTGND---------------------------RISKQANENATLLFQCLIR 180
Query: 367 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
++L +K V E RL+ +AF WL+ EIE RFQQA A GEMVGA AAQS+GEPATQMTLNT
Sbjct: 181 STLCTKYVSEEFRLSTEAFEWLVGEIETRFQQAQANPGEMVGALAAQSLGEPATQMTLNT 240
[19][TOP]
>UniRef100_B4IK28 DNA-directed RNA polymerase n=1 Tax=Drosophila sechellia
RepID=B4IK28_DROSE
Length = 1887
Score = 144 bits (364), Expect = 3e-33
Identities = 80/180 (44%), Positives = 112/180 (62%)
Frame = +1
Query: 7 EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
EW +L DRD LR ++F GE+K+ L N++R+IWN ++IF + + +DLSP ++++GV
Sbjct: 947 EWDRLVSDRDSLR-QIFPNGESKVVLPCNLQRMIWNVQKIFHINKRLPTDLSPIRVIKGV 1005
Query: 187 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
+ LL R ++T ++ +S+ A NATLLFQ +R
Sbjct: 1006 KTLLERCVIVTGND---------------------------RISKQANENATLLFQCLIR 1038
Query: 367 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
++L +K V E RL+ +AF WL+ EIE RFQQA A GEMVGA AAQS+GEPATQMTLNT
Sbjct: 1039 STLCTKYVSEEFRLSTEAFEWLVGEIETRFQQAQANPGEMVGALAAQSLGEPATQMTLNT 1098
[20][TOP]
>UniRef100_A9YGC1 RNA polymerase II 215 kD subunit (Fragment) n=2 Tax=melanogaster
subgroup RepID=A9YGC1_DROME
Length = 247
Score = 144 bits (364), Expect = 3e-33
Identities = 80/180 (44%), Positives = 112/180 (62%)
Frame = +1
Query: 7 EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
EW +L DRD LR ++F GE+K+ L N++R+IWN ++IF + + +DLSP ++++GV
Sbjct: 4 EWDRLVSDRDSLR-QIFPNGESKVVLPCNLQRMIWNVQKIFHINKRLPTDLSPIRVIKGV 62
Query: 187 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
+ LL R ++T ++ +S+ A NATLLFQ +R
Sbjct: 63 KTLLERCVIVTGND---------------------------RISKQANENATLLFQCLIR 95
Query: 367 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
++L +K V E RL+ +AF WL+ EIE RFQQA A GEMVGA AAQS+GEPATQMTLNT
Sbjct: 96 STLCTKYVSEEFRLSTEAFEWLVGEIETRFQQAQANPGEMVGALAAQSLGEPATQMTLNT 155
[21][TOP]
>UniRef100_A9UNH9 DNA-directed RNA polymerase n=1 Tax=Drosophila melanogaster
RepID=A9UNH9_DROME
Length = 1887
Score = 144 bits (364), Expect = 3e-33
Identities = 80/180 (44%), Positives = 112/180 (62%)
Frame = +1
Query: 7 EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
EW +L DRD LR ++F GE+K+ L N++R+IWN ++IF + + +DLSP ++++GV
Sbjct: 947 EWDRLVSDRDSLR-QIFPNGESKVVLPCNLQRMIWNVQKIFHINKRLPTDLSPIRVIKGV 1005
Query: 187 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
+ LL R ++T ++ +S+ A NATLLFQ +R
Sbjct: 1006 KTLLERCVIVTGND---------------------------RISKQANENATLLFQCLIR 1038
Query: 367 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
++L +K V E RL+ +AF WL+ EIE RFQQA A GEMVGA AAQS+GEPATQMTLNT
Sbjct: 1039 STLCTKYVSEEFRLSTEAFEWLVGEIETRFQQAQANPGEMVGALAAQSLGEPATQMTLNT 1098
[22][TOP]
>UniRef100_A9QMG9 DNA-directed RNA polymerase (Fragment) n=1 Tax=Poikilolaimus
regenfussi RepID=A9QMG9_9BILA
Length = 620
Score = 144 bits (364), Expect = 3e-33
Identities = 78/180 (43%), Positives = 112/180 (62%)
Frame = +1
Query: 7 EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
EWAQL++DR LR ++F G+AK+ L N++RLIWNA+++F V +++L+P +++ GV
Sbjct: 156 EWAQLEEDRRLLR-KIFPKGDAKVVLPCNLQRLIWNAQKVFHVETRKQTELNPLRVIEGV 214
Query: 187 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
L + ++ D+ +S+ AQ NATLL + +R
Sbjct: 215 RELSKKLVIVGGDD---------------------------RISKQAQFNATLLMNILLR 247
Query: 367 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
++L SK V +HRL ++AF WL+ EIE RF QA+A GEMVGA AAQS+GEPATQMTLNT
Sbjct: 248 STLCSKQVAEKHRLNQEAFEWLIGEIETRFXQAIAQPGEMVGALAAQSLGEPATQMTLNT 307
[23][TOP]
>UniRef100_P04052 DNA-directed RNA polymerase II subunit RPB1 n=2 Tax=Drosophila
melanogaster RepID=RPB1_DROME
Length = 1887
Score = 144 bits (364), Expect = 3e-33
Identities = 80/180 (44%), Positives = 112/180 (62%)
Frame = +1
Query: 7 EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
EW +L DRD LR ++F GE+K+ L N++R+IWN ++IF + + +DLSP ++++GV
Sbjct: 947 EWDRLVSDRDSLR-QIFPNGESKVVLPCNLQRMIWNVQKIFHINKRLPTDLSPIRVIKGV 1005
Query: 187 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
+ LL R ++T ++ +S+ A NATLLFQ +R
Sbjct: 1006 KTLLERCVIVTGND---------------------------RISKQANENATLLFQCLIR 1038
Query: 367 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
++L +K V E RL+ +AF WL+ EIE RFQQA A GEMVGA AAQS+GEPATQMTLNT
Sbjct: 1039 STLCTKYVSEEFRLSTEAFEWLVGEIETRFQQAQANPGEMVGALAAQSLGEPATQMTLNT 1098
[24][TOP]
>UniRef100_Q23699 DNA-directed RNA polymerase (Fragment) n=1 Tax=Crassostrea gigas
RepID=Q23699_CRAGI
Length = 1340
Score = 144 bits (363), Expect = 4e-33
Identities = 82/181 (45%), Positives = 111/181 (61%)
Frame = +1
Query: 4 KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
+EW QL++DRD LR +F TG++K+ L N++R+IWNA++IF + + +DL P K+V G
Sbjct: 865 REWEQLREDRDILR-SIFPTGDSKVVLPCNLQRMIWNAQKIFRIDTHKPTDLHPIKVVEG 923
Query: 184 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
VE L R V+ + LS A NATLLF+ +
Sbjct: 924 VEDLCKRLIVVAGGD---------------------------RLSIQANANATLLFKCLI 956
Query: 364 RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
R++L +K V E RL+ +AF WL+ E+E+RFQQA A GEMVGA AAQS+GEPATQMTLN
Sbjct: 957 RSTLCAKRVTEEFRLSSEAFEWLIGEVESRFQQAQAHPGEMVGALAAQSLGEPATQMTLN 1016
Query: 544 T 546
T
Sbjct: 1017 T 1017
[25][TOP]
>UniRef100_A9QMQ7 DNA-directed RNA polymerase (Fragment) n=1 Tax=Phasmarhabditis sp.
EM434 RepID=A9QMQ7_9BILA
Length = 398
Score = 144 bits (363), Expect = 4e-33
Identities = 80/180 (44%), Positives = 112/180 (62%)
Frame = +1
Query: 7 EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
EW QL++DR LR ++F +G+AK+ L N++RLIWNA++IF V +DL+P +++ GV
Sbjct: 164 EWNQLEEDRRLLR-KIFPSGDAKIVLPCNLQRLIWNAQKIFHVETRKPTDLNPLRVIEGV 222
Query: 187 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
L + ++ S ED +S+ AQ NATLL + +R
Sbjct: 223 RELSKKL-IIVSGED--------------------------RISKQAQYNATLLMNILIR 255
Query: 367 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
++L SK + + HRL +AF WLL E+E RF+QA+A GEMVGA AAQS+GEPATQMTLNT
Sbjct: 256 STLCSKKMATSHRLNSEAFEWLLGEVETRFKQAIAQPGEMVGALAAQSLGEPATQMTLNT 315
[26][TOP]
>UniRef100_A9QMG4 RNA polymerase 2 (Fragment) n=1 Tax=Pelodera strongyloides
dermatitica RepID=A9QMG4_9PELO
Length = 478
Score = 144 bits (363), Expect = 4e-33
Identities = 80/180 (44%), Positives = 109/180 (60%)
Frame = +1
Query: 7 EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
EW QL++DR LR ++F G+ K+ L N++RLIWNA++IF V S L+P K+V GV
Sbjct: 146 EWQQLEEDRRLLR-KIFPKGDHKVVLPCNLQRLIWNAQKIFKVETRKPSSLNPLKVVSGV 204
Query: 187 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
+ L H+ ++ D+ +S+ AQ NATLL + +R
Sbjct: 205 KELSHKLVIVCGDD---------------------------RISKQAQYNATLLMNILIR 237
Query: 367 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
++L SK + +HRL + F WLL EIE+RF QA+A GEMVGA AAQS+GEPATQMTLNT
Sbjct: 238 STLCSKQMAEKHRLNEEGFEWLLGEIEHRFNQAIAQPGEMVGALAAQSLGEPATQMTLNT 297
[27][TOP]
>UniRef100_A9QMF0 DNA-directed RNA polymerase (Fragment) n=1 Tax=Pelodera
strongyloides dermatitica RepID=A9QMF0_9PELO
Length = 633
Score = 144 bits (363), Expect = 4e-33
Identities = 80/180 (44%), Positives = 109/180 (60%)
Frame = +1
Query: 7 EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
EW QL++DR LR ++F G+ K+ L N++RLIWNA++IF V S L+P K+V GV
Sbjct: 165 EWQQLEEDRRLLR-KIFPKGDHKVVLPCNLQRLIWNAQKIFKVETRKPSSLNPLKVVSGV 223
Query: 187 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
+ L H+ ++ D+ +S+ AQ NATLL + +R
Sbjct: 224 KELSHKLVIVCGDD---------------------------RISKQAQYNATLLMNILIR 256
Query: 367 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
++L SK + +HRL + F WLL EIE+RF QA+A GEMVGA AAQS+GEPATQMTLNT
Sbjct: 257 STLCSKQMAEKHRLNEEGFEWLLGEIEHRFNQAIAQPGEMVGALAAQSLGEPATQMTLNT 316
[28][TOP]
>UniRef100_UPI000186D846 predicted protein n=1 Tax=Pediculus humanus corporis
RepID=UPI000186D846
Length = 1885
Score = 144 bits (362), Expect = 5e-33
Identities = 83/181 (45%), Positives = 112/181 (61%)
Frame = +1
Query: 4 KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
KEW QL+KDR+ LR ++F +GE K+ L N++R+IWN ++IF + + +DLSP +++ G
Sbjct: 939 KEWDQLQKDREALR-QIFPSGENKVVLPCNLQRMIWNVQKIFHINKRAPTDLSPLRVIEG 997
Query: 184 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
V LL + V+ + ED LS+ A NATLLFQ V
Sbjct: 998 VRDLLQKC-VIVAGED--------------------------HLSKQANENATLLFQCLV 1030
Query: 364 RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
R++L +K V + RL+ +AF WL+ EIE RFQQA GEMVGA AAQS+GEPATQMTLN
Sbjct: 1031 RSTLCTKCVSEDMRLSTEAFEWLIGEIETRFQQAQCAPGEMVGALAAQSLGEPATQMTLN 1090
Query: 544 T 546
T
Sbjct: 1091 T 1091
[29][TOP]
>UniRef100_Q30BD9 DNA-directed RNA polymerase n=1 Tax=Glaucocystis nostochinearum
RepID=Q30BD9_9EUKA
Length = 1852
Score = 144 bits (362), Expect = 5e-33
Identities = 87/180 (48%), Positives = 108/180 (60%)
Frame = +1
Query: 7 EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
E+ QL DR LR + T E PL VN++RLIWNA++IF + SDL P I++GV
Sbjct: 942 EFKQLMNDRTALRESI-PTDENTWPLPVNLKRLIWNAQKIFHIDVRKPSDLDPVDIIKGV 1000
Query: 187 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
LL + V+ ++ V+A Q NAT+LFQ+ VR
Sbjct: 1001 NLLTKQLVVIPGEDPLSVEA---------------------------QANATMLFQILVR 1033
Query: 367 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
+ LASK VL+E+RLT AF WLL EIE+RF QA+A GEMVGA AAQSIGEPATQMTLNT
Sbjct: 1034 SCLASKRVLTEYRLTSHAFEWLLGEIESRFLQAIANPGEMVGAIAAQSIGEPATQMTLNT 1093
[30][TOP]
>UniRef100_Q9XZU8 DNA-directed RNA polymerase (Fragment) n=1 Tax=Drosophila
pseudoobscura pseudoobscura RepID=Q9XZU8_DROPS
Length = 1811
Score = 144 bits (362), Expect = 5e-33
Identities = 79/180 (43%), Positives = 111/180 (61%)
Frame = +1
Query: 7 EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
EW L +DRD LR ++F G++K+ L N++R+IWN ++IF + + +DLSP ++++GV
Sbjct: 869 EWDHLMQDRDHLR-QIFPNGDSKVVLPCNLQRMIWNVQKIFHINKRLPTDLSPMRVIKGV 927
Query: 187 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
+ LL R ++T + +S+ A NATLLFQ +R
Sbjct: 928 KTLLERCVIVTGAD---------------------------RISKQANENATLLFQCLIR 960
Query: 367 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
++L +K V E RL+ +AF WL+ EIE RFQQA A GEMVGA AAQS+GEPATQMTLNT
Sbjct: 961 STLCTKYVSEEFRLSTEAFEWLIGEIETRFQQAQANPGEMVGALAAQSLGEPATQMTLNT 1020
[31][TOP]
>UniRef100_Q29IN2 DNA-directed RNA polymerase n=1 Tax=Drosophila pseudoobscura
pseudoobscura RepID=Q29IN2_DROPS
Length = 1889
Score = 144 bits (362), Expect = 5e-33
Identities = 79/180 (43%), Positives = 111/180 (61%)
Frame = +1
Query: 7 EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
EW L +DRD LR ++F G++K+ L N++R+IWN ++IF + + +DLSP ++++GV
Sbjct: 947 EWDHLMQDRDHLR-QIFPNGDSKVVLPCNLQRMIWNVQKIFHINKRLPTDLSPMRVIKGV 1005
Query: 187 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
+ LL R ++T + +S+ A NATLLFQ +R
Sbjct: 1006 KTLLERCVIVTGAD---------------------------RISKQANENATLLFQCLIR 1038
Query: 367 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
++L +K V E RL+ +AF WL+ EIE RFQQA A GEMVGA AAQS+GEPATQMTLNT
Sbjct: 1039 STLCTKYVSEEFRLSTEAFEWLIGEIETRFQQAQANPGEMVGALAAQSLGEPATQMTLNT 1098
[32][TOP]
>UniRef100_B4H2R8 DNA-directed RNA polymerase n=1 Tax=Drosophila persimilis
RepID=B4H2R8_DROPE
Length = 1804
Score = 144 bits (362), Expect = 5e-33
Identities = 79/180 (43%), Positives = 111/180 (61%)
Frame = +1
Query: 7 EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
EW L +DRD LR ++F G++K+ L N++R+IWN ++IF + + +DLSP ++++GV
Sbjct: 947 EWDHLMQDRDHLR-QIFPNGDSKVVLPCNLQRMIWNVQKIFHINKRLPTDLSPMRVIKGV 1005
Query: 187 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
+ LL R ++T + +S+ A NATLLFQ +R
Sbjct: 1006 KTLLERCVIVTGAD---------------------------RISKQANENATLLFQCLIR 1038
Query: 367 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
++L +K V E RL+ +AF WL+ EIE RFQQA A GEMVGA AAQS+GEPATQMTLNT
Sbjct: 1039 STLCTKYVSEEFRLSTEAFEWLIGEIETRFQQAQANPGEMVGALAAQSLGEPATQMTLNT 1098
[33][TOP]
>UniRef100_O01364 DNA-directed RNA polymerase (Fragment) n=1 Tax=Cruznema tripartitum
RepID=O01364_9BILA
Length = 633
Score = 143 bits (361), Expect = 7e-33
Identities = 80/180 (44%), Positives = 112/180 (62%)
Frame = +1
Query: 7 EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
EWAQL++DR LR ++F TG+AK+ L N++RL+WNA++IF V +DL+P +++ GV
Sbjct: 160 EWAQLEEDRRLLR-KIFPTGDAKIVLPCNLKRLLWNAQKIFHVEMRKPTDLNPLRVIEGV 218
Query: 187 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
L + V+ ED +S+ AQ NATLL + +R
Sbjct: 219 RELSKKL-VIVGGED--------------------------RISKQAQYNATLLMNILLR 251
Query: 367 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
++L SK + S ++L ++AF WLL E+E RFQQ +A GEMVGA AAQS+GEPATQMTLNT
Sbjct: 252 STLCSKQMASHYKLNQEAFDWLLGEVETRFQQPIAQPGEMVGALAAQSLGEPATQMTLNT 311
[34][TOP]
>UniRef100_O01375 DNA-directed RNA polymerase (Fragment) n=1 Tax=Teratorhabditis
palmarum RepID=O01375_9BILA
Length = 631
Score = 143 bits (360), Expect = 9e-33
Identities = 81/181 (44%), Positives = 112/181 (61%)
Frame = +1
Query: 4 KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
+EW QL++DR LR ++F G+ K+ L N++RLIWNA++IF + +DLSP +++ G
Sbjct: 159 EEWQQLEEDRRLLR-KIFPKGDNKVVLPCNLQRLIWNAQKIFKIETRKVTDLSPVRVIEG 217
Query: 184 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
+ L + V+ S ED +S+ AQ NATLL + +
Sbjct: 218 IRELSKKL-VIVSGED--------------------------RISKQAQYNATLLMNILI 250
Query: 364 RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
R++L SK V S H+L +AF WLL EIE+RF+QA+A GEMVGA AAQS+GEPATQMTLN
Sbjct: 251 RSTLCSKRVASMHKLNNEAFDWLLGEIEHRFKQAIAQPGEMVGALAAQSLGEPATQMTLN 310
Query: 544 T 546
T
Sbjct: 311 T 311
[35][TOP]
>UniRef100_B4JXA6 DNA-directed RNA polymerase n=1 Tax=Drosophila grimshawi
RepID=B4JXA6_DROGR
Length = 1889
Score = 143 bits (360), Expect = 9e-33
Identities = 80/180 (44%), Positives = 111/180 (61%)
Frame = +1
Query: 7 EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
EW L DRD LR +F+ G++K+ L N++R+IWN ++IF + + +DLSP +++RGV
Sbjct: 947 EWDHLVTDRDNLR-TIFRNGDSKVVLPCNLQRMIWNVQKIFHINKRLPTDLSPMRVIRGV 1005
Query: 187 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
LL+R ++T ++ +S+ A NATLLFQ +R
Sbjct: 1006 SDLLNRCVIVTGND---------------------------RISKQANENATLLFQCLIR 1038
Query: 367 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
++L +K V E RL+ +AF WL+ EIE RFQQA A GEMVGA AAQS+GEPATQMTLNT
Sbjct: 1039 STLCTKYVSEEFRLSTEAFEWLIGEIETRFQQAQANPGEMVGALAAQSLGEPATQMTLNT 1098
[36][TOP]
>UniRef100_A9QMS7 DNA-directed RNA polymerase (Fragment) n=1 Tax=Cuticonema vivipara
RepID=A9QMS7_9BILA
Length = 407
Score = 143 bits (360), Expect = 9e-33
Identities = 81/181 (44%), Positives = 113/181 (62%)
Frame = +1
Query: 4 KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
+EW QL+ DR LR ++F TG+A + L N++R++WNA++IF V +DLSP K+++G
Sbjct: 163 EEWIQLESDRRLLR-KIFPTGKAGVVLPCNLDRMMWNARKIFHVETRKPTDLSPLKVIQG 221
Query: 184 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
V+ L R V+ S ED ++S+ AQ NATLL + +
Sbjct: 222 VKDLTSRL-VIVSGED--------------------------KISQQAQYNATLLMNILL 254
Query: 364 RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
R++L SK + +H+L +AF WLL EIE +F QA+A GEMVGA AAQS+GEPATQMTLN
Sbjct: 255 RSTLCSKRLAEKHKLNTEAFEWLLGEIETKFNQAIAQPGEMVGALAAQSLGEPATQMTLN 314
Query: 544 T 546
T
Sbjct: 315 T 315
[37][TOP]
>UniRef100_Q30BD8 DNA-directed RNA polymerase (Fragment) n=1 Tax=Cyanophora paradoxa
RepID=Q30BD8_CYAPA
Length = 1000
Score = 142 bits (359), Expect = 1e-32
Identities = 84/177 (47%), Positives = 110/177 (62%)
Frame = +1
Query: 4 KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
KE+ QL KDR+ LR E+ ++GE + L VN++RLIWNA++I+ V + SDL P I++G
Sbjct: 851 KEYEQLLKDREQLRSEIVQSGEGAVHLPVNLKRLIWNAQKIYKVDTSKPSDLRPDIILQG 910
Query: 184 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
VELL + V+ ++ LS AQ NAT LF +H+
Sbjct: 911 VELLSTQLVVIAGEDT---------------------------LSREAQENATRLFNIHL 943
Query: 364 RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQM 534
RA+LA+K VLSE+RL+ A WLL IE+RF QA+A GEMVGA AAQSIGEPATQM
Sbjct: 944 RATLATKRVLSEYRLSAAALEWLLGVIESRFNQAIAHPGEMVGAIAAQSIGEPATQM 1000
[38][TOP]
>UniRef100_Q2N162 DNA-directed RNA polymerase II largest subunit (Fragment) n=1
Tax=Suberites fuscus RepID=Q2N162_9METZ
Length = 260
Score = 142 bits (359), Expect = 1e-32
Identities = 83/180 (46%), Positives = 110/180 (61%)
Frame = +1
Query: 7 EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
EW QL +DR+ +R VF TG +K+ L VN+ RLIWNA++IF V ++DL P K+V GV
Sbjct: 103 EWQQLCQDREIVR-SVFPTGNSKIVLPVNLNRLIWNAQKIFHVDIRGQTDLHPLKVVEGV 161
Query: 187 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
L ++ ++ ++ ELS+ AQ NATLLF+ +R
Sbjct: 162 RDLSNKLIIVQGED---------------------------ELSKQAQTNATLLFKSLLR 194
Query: 367 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
+ L +K + EH+L +AF W+L EIE RFQQA A GEMVGA AAQS+GEPATQMTLNT
Sbjct: 195 SVLCTKKMSEEHKLNLEAFEWVLGEIETRFQQAQAQPGEMVGALAAQSLGEPATQMTLNT 254
[39][TOP]
>UniRef100_B4MAN9 DNA-directed RNA polymerase n=1 Tax=Drosophila virilis
RepID=B4MAN9_DROVI
Length = 1889
Score = 142 bits (359), Expect = 1e-32
Identities = 80/180 (44%), Positives = 111/180 (61%)
Frame = +1
Query: 7 EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
EW +L DRD LR +F G++K+ L N++R+IWN ++IF + + +DLSP +++RGV
Sbjct: 947 EWDRLVSDRDNLR-TIFPNGDSKVVLPCNLQRMIWNVQKIFHINKRLPTDLSPMRVIRGV 1005
Query: 187 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
+ LL R ++T ++ +S+ A NATLLFQ +R
Sbjct: 1006 KGLLERCVIVTGND---------------------------RISKQANENATLLFQCLIR 1038
Query: 367 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
++L +K V E RL+ +AF WL+ EIE RFQQA A GEMVGA AAQS+GEPATQMTLNT
Sbjct: 1039 STLCTKYVSEEFRLSTEAFEWLIGEIETRFQQAQANPGEMVGALAAQSLGEPATQMTLNT 1098
[40][TOP]
>UniRef100_B4L732 DNA-directed RNA polymerase n=1 Tax=Drosophila mojavensis
RepID=B4L732_DROMO
Length = 1889
Score = 142 bits (359), Expect = 1e-32
Identities = 80/180 (44%), Positives = 111/180 (61%)
Frame = +1
Query: 7 EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
EW +L DRD LR +F G++K+ L N++R+IWN ++IF + + +DLSP +++RGV
Sbjct: 947 EWDRLVSDRDNLR-TIFPNGDSKVVLPCNLQRMIWNVQKIFHINKRLPTDLSPMRVIRGV 1005
Query: 187 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
+ LL R ++T ++ +S+ A NATLLFQ +R
Sbjct: 1006 KGLLERCVIVTGND---------------------------RISKQANENATLLFQCLIR 1038
Query: 367 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
++L +K V E RL+ +AF WL+ EIE RFQQA A GEMVGA AAQS+GEPATQMTLNT
Sbjct: 1039 STLCTKYVSEEFRLSTEAFEWLIGEIETRFQQAQANPGEMVGALAAQSLGEPATQMTLNT 1098
[41][TOP]
>UniRef100_B3MQ29 DNA-directed RNA polymerase n=1 Tax=Drosophila ananassae
RepID=B3MQ29_DROAN
Length = 1889
Score = 142 bits (359), Expect = 1e-32
Identities = 79/180 (43%), Positives = 112/180 (62%)
Frame = +1
Query: 7 EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
EW +L DRD LR ++F G++K+ L N++R+IWN ++IF + + +DLSP ++++GV
Sbjct: 947 EWDRLVTDRDSLR-QIFPNGDSKVVLPCNLQRMIWNVQKIFHINKRLPTDLSPMRVIKGV 1005
Query: 187 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
+ LL R ++T ++ +S+ A NATLLFQ +R
Sbjct: 1006 KGLLERCVIVTGND---------------------------RISKQANENATLLFQCLIR 1038
Query: 367 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
++L +K V E RL+ +AF WL+ EIE RFQQA A GEMVGA AAQS+GEPATQMTLNT
Sbjct: 1039 STLCTKYVSEEFRLSTEAFEWLIGEIETRFQQAQANPGEMVGALAAQSLGEPATQMTLNT 1098
[42][TOP]
>UniRef100_A9QMP5 DNA-directed RNA polymerase (Fragment) n=1 Tax=Oscheius insectivora
RepID=A9QMP5_9BILA
Length = 474
Score = 142 bits (359), Expect = 1e-32
Identities = 77/181 (42%), Positives = 113/181 (62%)
Frame = +1
Query: 4 KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
KEW QL++DR LR ++F TG+AK+ L N++RLIWNA++IF V + L+P ++++G
Sbjct: 152 KEWDQLEEDRRLLR-KIFPTGDAKIVLPCNLQRLIWNAQKIFHVETRQPTSLNPLRVIQG 210
Query: 184 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
V L + ++ D+ +S+ AQ NATLL + +
Sbjct: 211 VRELSEKLVIVCGDD---------------------------RISKQAQYNATLLMNILL 243
Query: 364 RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
R++L SK + + ++L ++AF WLL E+E RF+QA+A GEMVGA AAQS+GEPATQMTLN
Sbjct: 244 RSTLCSKKMATTYKLNQEAFEWLLGEVETRFKQAIAQPGEMVGALAAQSLGEPATQMTLN 303
Query: 544 T 546
T
Sbjct: 304 T 304
[43][TOP]
>UniRef100_A9QMH3 DNA-directed RNA polymerase (Fragment) n=1 Tax=Rhabditis sp. PS1130
RepID=A9QMH3_9BILA
Length = 619
Score = 142 bits (359), Expect = 1e-32
Identities = 79/181 (43%), Positives = 114/181 (62%)
Frame = +1
Query: 4 KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
+EW QL++DR LR ++F +G AK+ L N++RL+WNA++IF V +DL+P +++ G
Sbjct: 155 QEWGQLEEDRRLLR-KIFPSGNAKIVLPCNLQRLLWNAQKIFHVETRKPTDLNPLRVIEG 213
Query: 184 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
V L + ++ S ED ++S+ AQ NATLL + V
Sbjct: 214 VRELSKKL-IIVSGED--------------------------KISKQAQYNATLLMNILV 246
Query: 364 RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
R++L SK + S+++L +AF WLL E+E RF+QA+A GEMVGA AAQS+GEPATQMTLN
Sbjct: 247 RSTLCSKKMASKYKLNSEAFEWLLGEVETRFKQAIAQPGEMVGALAAQSLGEPATQMTLN 306
Query: 544 T 546
T
Sbjct: 307 T 307
[44][TOP]
>UniRef100_Q1WKU4 Putative RNA polymerase II 215 kD subunit (Fragment) n=1
Tax=Drosophila erecta RepID=Q1WKU4_DROER
Length = 760
Score = 142 bits (358), Expect = 2e-32
Identities = 79/180 (43%), Positives = 112/180 (62%)
Frame = +1
Query: 7 EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
EW +L DRD LR ++F G++K+ L N++R+IWN ++IF + + +DLSP ++++GV
Sbjct: 89 EWDRLVGDRDSLR-QIFPNGDSKVVLPCNLQRMIWNVQKIFHINKRLPTDLSPMRVIKGV 147
Query: 187 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
+ LL R ++T ++ +S+ A NATLLFQ +R
Sbjct: 148 KGLLERCVIVTGND---------------------------RISKQANENATLLFQCLIR 180
Query: 367 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
++L +K V E RL+ +AF WL+ EIE RFQQA A GEMVGA AAQS+GEPATQMTLNT
Sbjct: 181 STLCTKYVSEEFRLSTEAFEWLIGEIETRFQQAQANPGEMVGALAAQSLGEPATQMTLNT 240
[45][TOP]
>UniRef100_Q1WKU0 Putative RNA polymerase II 215 kD subunit (Fragment) n=2
Tax=melanogaster subgroup RepID=Q1WKU0_DROYA
Length = 766
Score = 142 bits (358), Expect = 2e-32
Identities = 79/180 (43%), Positives = 112/180 (62%)
Frame = +1
Query: 7 EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
EW +L DRD LR ++F G++K+ L N++R+IWN ++IF + + +DLSP ++++GV
Sbjct: 89 EWDRLVGDRDSLR-QIFPNGDSKVVLPCNLQRMIWNVQKIFHINKRLPTDLSPMRVIKGV 147
Query: 187 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
+ LL R ++T ++ +S+ A NATLLFQ +R
Sbjct: 148 KGLLERCVIVTGND---------------------------RISKQANENATLLFQCLIR 180
Query: 367 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
++L +K V E RL+ +AF WL+ EIE RFQQA A GEMVGA AAQS+GEPATQMTLNT
Sbjct: 181 STLCTKYVSEEFRLSTEAFEWLIGEIETRFQQAQANPGEMVGALAAQSLGEPATQMTLNT 240
[46][TOP]
>UniRef100_B4PY98 DNA-directed RNA polymerase n=1 Tax=Drosophila yakuba
RepID=B4PY98_DROYA
Length = 1889
Score = 142 bits (358), Expect = 2e-32
Identities = 79/180 (43%), Positives = 112/180 (62%)
Frame = +1
Query: 7 EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
EW +L DRD LR ++F G++K+ L N++R+IWN ++IF + + +DLSP ++++GV
Sbjct: 947 EWDRLVGDRDSLR-QIFPNGDSKVVLPCNLQRMIWNVQKIFHINKRLPTDLSPMRVIKGV 1005
Query: 187 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
+ LL R ++T ++ +S+ A NATLLFQ +R
Sbjct: 1006 KGLLERCVIVTGND---------------------------RISKQANENATLLFQCLIR 1038
Query: 367 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
++L +K V E RL+ +AF WL+ EIE RFQQA A GEMVGA AAQS+GEPATQMTLNT
Sbjct: 1039 STLCTKYVSEEFRLSTEAFEWLIGEIETRFQQAQANPGEMVGALAAQSLGEPATQMTLNT 1098
[47][TOP]
>UniRef100_B4NDK9 DNA-directed RNA polymerase n=1 Tax=Drosophila willistoni
RepID=B4NDK9_DROWI
Length = 1890
Score = 142 bits (358), Expect = 2e-32
Identities = 80/180 (44%), Positives = 111/180 (61%)
Frame = +1
Query: 7 EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
EW +L DRD LR ++F G++K+ L N++R+IWN ++IF + + +DLSP ++++GV
Sbjct: 947 EWDRLVVDRDSLR-QIFPNGDSKVVLPCNLQRMIWNVQKIFHINKRLPTDLSPMRVIKGV 1005
Query: 187 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
LL R ++T ++ +S+ A NATLLFQ VR
Sbjct: 1006 RGLLERCVIVTGND---------------------------RISKQANENATLLFQCLVR 1038
Query: 367 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
++L +K V E RL+ +AF WL+ EIE RFQQA A GEMVGA AAQS+GEPATQMTLNT
Sbjct: 1039 STLCTKYVSEEFRLSTEAFEWLIGEIETRFQQAQANPGEMVGALAAQSLGEPATQMTLNT 1098
[48][TOP]
>UniRef100_B3NUC1 DNA-directed RNA polymerase n=1 Tax=Drosophila erecta
RepID=B3NUC1_DROER
Length = 1889
Score = 142 bits (358), Expect = 2e-32
Identities = 79/180 (43%), Positives = 112/180 (62%)
Frame = +1
Query: 7 EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
EW +L DRD LR ++F G++K+ L N++R+IWN ++IF + + +DLSP ++++GV
Sbjct: 947 EWDRLVGDRDSLR-QIFPNGDSKVVLPCNLQRMIWNVQKIFHINKRLPTDLSPMRVIKGV 1005
Query: 187 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
+ LL R ++T ++ +S+ A NATLLFQ +R
Sbjct: 1006 KGLLERCVIVTGND---------------------------RISKQANENATLLFQCLIR 1038
Query: 367 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
++L +K V E RL+ +AF WL+ EIE RFQQA A GEMVGA AAQS+GEPATQMTLNT
Sbjct: 1039 STLCTKYVSEEFRLSTEAFEWLIGEIETRFQQAQANPGEMVGALAAQSLGEPATQMTLNT 1098
[49][TOP]
>UniRef100_A9QME1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Rhabditis brassicae
RepID=A9QME1_9BILA
Length = 628
Score = 142 bits (358), Expect = 2e-32
Identities = 79/181 (43%), Positives = 112/181 (61%)
Frame = +1
Query: 4 KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
+EW QL++DR LR ++F G AK+ L N++RL+WNA++IF V +DL+P +++ G
Sbjct: 156 QEWGQLEEDRRLLR-KIFPNGNAKIVLPCNLQRLLWNAQKIFHVETRKPTDLNPLRVIEG 214
Query: 184 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
V L + ++ S ED +S+ AQ NATLL + V
Sbjct: 215 VRELSQKL-IIVSGED--------------------------RISKQAQYNATLLMNILV 247
Query: 364 RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
R++L SK + S+++L +AF WLL E+E RF+QA+A GEMVGA AAQS+GEPATQMTLN
Sbjct: 248 RSTLCSKKMASKYKLNSEAFEWLLGEVETRFKQAIAQPGEMVGALAAQSLGEPATQMTLN 307
Query: 544 T 546
T
Sbjct: 308 T 308
[50][TOP]
>UniRef100_Q1WKU3 Putative RNA polymerase II 215 kD subunit (Fragment) n=1
Tax=Drosophila orena RepID=Q1WKU3_DROOR
Length = 750
Score = 142 bits (357), Expect = 2e-32
Identities = 79/180 (43%), Positives = 111/180 (61%)
Frame = +1
Query: 7 EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
EW L DRD LR ++F G++K+ L N++R+IWN ++IF + + +DLSP ++++GV
Sbjct: 89 EWDHLVGDRDSLR-QIFPNGDSKVVLPCNLQRMIWNVQKIFHINKRLPTDLSPMRVIKGV 147
Query: 187 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
+ LL R ++T ++ +S+ A NATLLFQ +R
Sbjct: 148 KGLLERCVIVTGND---------------------------RISKQANENATLLFQCLIR 180
Query: 367 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
++L +K V E RL+ +AF WL+ EIE RFQQA A GEMVGA AAQS+GEPATQMTLNT
Sbjct: 181 STLCTKYVSEEFRLSTEAFEWLIGEIETRFQQAQANPGEMVGALAAQSLGEPATQMTLNT 240
[51][TOP]
>UniRef100_P90678 DNA-directed RNA polymerase (Fragment) n=1 Tax=Aduncospiculum
halicti RepID=P90678_9BILA
Length = 631
Score = 142 bits (357), Expect = 2e-32
Identities = 78/180 (43%), Positives = 109/180 (60%)
Frame = +1
Query: 7 EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
EW QL+ DR LR ++F G+AK+ L N++RLIWNA++IF V +DL+P ++++GV
Sbjct: 160 EWMQLQDDRQLLR-KIFPKGDAKIVLPCNLQRLIWNAQKIFHVETRKVTDLNPVRVIQGV 218
Query: 187 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
+ + ++ D+ +S AQ NATLL + VR
Sbjct: 219 REVSKKLIIVGGDD---------------------------RISVQAQYNATLLMNILVR 251
Query: 367 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
++L +K + +H+L +AF WLL EIE RFQQA+A GEMVGA AAQS+GEPATQMTLNT
Sbjct: 252 STLCAKAMAEKHKLNAEAFEWLLGEIETRFQQAIAQPGEMVGALAAQSLGEPATQMTLNT 311
[52][TOP]
>UniRef100_A9QMR5 DNA-directed RNA polymerase (Fragment) n=1 Tax=Rhabditoides
inermiformis RepID=A9QMR5_9BILA
Length = 524
Score = 141 bits (356), Expect = 3e-32
Identities = 79/180 (43%), Positives = 111/180 (61%)
Frame = +1
Query: 7 EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
EW QL++DR LR ++F G++K+ L N++RLIWNA++IF V ++S L+P +++ GV
Sbjct: 154 EWLQLEEDRRLLR-KIFPKGDSKVVLPCNLQRLIWNAQKIFHVETREKSSLNPLRVIAGV 212
Query: 187 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
+ + V+ ED +S+ AQ NATLL + VR
Sbjct: 213 REMSQKL-VIVGGED--------------------------RISKQAQYNATLLMNILVR 245
Query: 367 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
++L SK + ++RL +AF WLL E+E RFQQA+A GEMVGA AAQS+GEPATQMTLNT
Sbjct: 246 STLCSKQMADKYRLNAQAFEWLLGEVETRFQQAIAQPGEMVGALAAQSLGEPATQMTLNT 305
[53][TOP]
>UniRef100_A9QMF4 RNA polymerase 2 (Fragment) n=1 Tax=Rhabditoides inermiformis
RepID=A9QMF4_9BILA
Length = 597
Score = 141 bits (356), Expect = 3e-32
Identities = 79/180 (43%), Positives = 111/180 (61%)
Frame = +1
Query: 7 EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
EW QL++DR LR ++F G++K+ L N++RLIWNA++IF V ++S L+P +++ GV
Sbjct: 122 EWLQLEEDRRLLR-KIFPKGDSKVVLPCNLQRLIWNAQKIFHVETREKSSLNPLRVIAGV 180
Query: 187 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
+ + V+ ED +S+ AQ NATLL + VR
Sbjct: 181 REMSQKL-VIVGGED--------------------------RISKQAQYNATLLMNILVR 213
Query: 367 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
++L SK + ++RL +AF WLL E+E RFQQA+A GEMVGA AAQS+GEPATQMTLNT
Sbjct: 214 STLCSKQMADKYRLNAQAFEWLLGEVETRFQQAIAQPGEMVGALAAQSLGEPATQMTLNT 273
[54][TOP]
>UniRef100_A9QME6 RNA polymerase 2 (Fragment) n=1 Tax=Pellioditis sp. JU274
RepID=A9QME6_9PELO
Length = 526
Score = 141 bits (356), Expect = 3e-32
Identities = 80/181 (44%), Positives = 113/181 (62%)
Frame = +1
Query: 4 KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
+EWAQL++DR LR ++F G+AK+ L N+ RLIWNA++IF V ++L+P++++ G
Sbjct: 60 EEWAQLEEDRRLLR-KIFPRGDAKVVLPCNLNRLIWNAQKIFKVETRKLTNLNPTRVIDG 118
Query: 184 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
V L + ++ S ED +S+ AQ NATLL + +
Sbjct: 119 VRNLSKKL-IIVSGED--------------------------RISKQAQYNATLLMNILL 151
Query: 364 RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
R++L SK + S ++L +AF WLL E+E RFQQA+A GEMVGA AAQS+GEPATQMTLN
Sbjct: 152 RSTLCSKKMASTYKLNAEAFEWLLGEVETRFQQAIAQPGEMVGALAAQSLGEPATQMTLN 211
Query: 544 T 546
T
Sbjct: 212 T 212
[55][TOP]
>UniRef100_Q6E228 DNA-directed RNA polymerase (Fragment) n=1 Tax=Rhabditella axei
RepID=Q6E228_9BILA
Length = 621
Score = 141 bits (355), Expect = 4e-32
Identities = 78/180 (43%), Positives = 113/180 (62%)
Frame = +1
Query: 7 EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
EW QL++DR LR ++F TG+AK+ L N++RLIWNA++IF V +DL+P +++ G+
Sbjct: 164 EWHQLEEDRRLLR-KIFPTGDAKIVLPCNLQRLIWNAQKIFHVETRKPTDLNPLRVIDGI 222
Query: 187 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
+ L + ++ S ED +S+ AQ NATLL + +R
Sbjct: 223 KELSSKL-IIVSGED--------------------------RISQQAQYNATLLMNILIR 255
Query: 367 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
++L SK + S ++L ++F WL+ EIE RF+QA+A GEMVGA AAQS+GEPATQMTLNT
Sbjct: 256 STLCSKKMASTYKLNAESFEWLIGEIETRFKQAIAQPGEMVGALAAQSLGEPATQMTLNT 315
[56][TOP]
>UniRef100_Q4SF83 DNA-directed RNA polymerase (Fragment) n=1 Tax=Tetraodon nigroviridis
RepID=Q4SF83_TETNG
Length = 1745
Score = 140 bits (354), Expect = 5e-32
Identities = 81/189 (42%), Positives = 116/189 (61%), Gaps = 8/189 (4%)
Frame = +1
Query: 4 KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
+E+ ++K+DR+ LR +F TG++K+ L N+ R+IWNA++IF + +DLSP ++V G
Sbjct: 828 REFEKMKEDREILR-AIFPTGDSKVVLPCNLARMIWNAQKIFRINTRTPTDLSPLRVVEG 886
Query: 184 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALK--------ELSETAQLNA 339
+ + + S +IA SG + + K LS AQ NA
Sbjct: 887 ILSSVSLNEICCSPPFTLNISIADIQFEHVFGLSGTHELSKKLVIVNGDDPLSRQAQQNA 946
Query: 340 TLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGE 519
TLLF +H+R++L SK + E RL+ +AF WLL EIE +F Q++A GEMVGA AAQS+GE
Sbjct: 947 TLLFNIHLRSTLCSKRMTEEFRLSTEAFDWLLGEIETKFNQSIAHPGEMVGALAAQSLGE 1006
Query: 520 PATQMTLNT 546
PATQMTLNT
Sbjct: 1007 PATQMTLNT 1015
[57][TOP]
>UniRef100_Q9XZU9 DNA-directed RNA polymerase n=1 Tax=Drosophila subobscura
RepID=Q9XZU9_DROSU
Length = 1889
Score = 140 bits (354), Expect = 5e-32
Identities = 79/180 (43%), Positives = 109/180 (60%)
Frame = +1
Query: 7 EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
EW L DRD LR +F G++K+ L N++R+IWN ++IF + + +DLSP ++++GV
Sbjct: 947 EWDHLMHDRDNLR-VIFPNGDSKVVLPCNLQRMIWNVQKIFHINKRLPTDLSPMRVIKGV 1005
Query: 187 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
+ LL R ++T + +S+ A NATLLFQ +R
Sbjct: 1006 KTLLERCVIVTGAD---------------------------RISKQANENATLLFQCLIR 1038
Query: 367 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
++L +K V E RL+ +AF WL+ EIE RFQQA A GEMVGA AAQS+GEPATQMTLNT
Sbjct: 1039 STLCTKYVSEEFRLSTEAFEWLIGEIETRFQQAQANPGEMVGALAAQSLGEPATQMTLNT 1098
[58][TOP]
>UniRef100_Q9XZS2 DNA-directed RNA polymerase n=1 Tax=Drosophila madeirensis
RepID=Q9XZS2_DROMD
Length = 1889
Score = 140 bits (354), Expect = 5e-32
Identities = 79/180 (43%), Positives = 109/180 (60%)
Frame = +1
Query: 7 EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
EW L DRD LR +F G++K+ L N++R+IWN ++IF + + +DLSP ++++GV
Sbjct: 947 EWDNLMHDRDNLR-VIFPNGDSKVVLPCNLQRMIWNVQKIFHINKRLPTDLSPMRVIKGV 1005
Query: 187 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
+ LL R ++T + +S+ A NATLLFQ +R
Sbjct: 1006 KTLLERCVIVTGAD---------------------------RISKQANENATLLFQCLIR 1038
Query: 367 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
++L +K V E RL+ +AF WL+ EIE RFQQA A GEMVGA AAQS+GEPATQMTLNT
Sbjct: 1039 STLCTKYVSEEFRLSTEAFEWLIGEIETRFQQAQANPGEMVGALAAQSLGEPATQMTLNT 1098
[59][TOP]
>UniRef100_Q9XZS1 DNA-directed RNA polymerase n=1 Tax=Drosophila guanche
RepID=Q9XZS1_DROGU
Length = 1889
Score = 140 bits (354), Expect = 5e-32
Identities = 79/180 (43%), Positives = 109/180 (60%)
Frame = +1
Query: 7 EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
EW L DRD LR +F G++K+ L N++R+IWN ++IF + + +DLSP ++++GV
Sbjct: 947 EWDHLMHDRDNLR-VIFPNGDSKVVLPCNLQRMIWNVQKIFHINKRLPTDLSPMRVIKGV 1005
Query: 187 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
+ LL R ++T + +S+ A NATLLFQ +R
Sbjct: 1006 KTLLERCVIVTGAD---------------------------RISKQANENATLLFQCLIR 1038
Query: 367 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
++L +K V E RL+ +AF WL+ EIE RFQQA A GEMVGA AAQS+GEPATQMTLNT
Sbjct: 1039 STLCTKYVSEEFRLSTEAFEWLIGEIETRFQQAQANPGEMVGALAAQSLGEPATQMTLNT 1098
[60][TOP]
>UniRef100_Q25203 DNA-directed RNA polymerase (Fragment) n=1 Tax=Ilyanassa obsoleta
RepID=Q25203_9CAEN
Length = 1343
Score = 140 bits (354), Expect = 5e-32
Identities = 81/180 (45%), Positives = 106/180 (58%)
Frame = +1
Query: 7 EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
EW QL DRD R +VF TG+A++ L N++R+IWNA++IF + + SDL P +V GV
Sbjct: 869 EWLQLISDRDSAR-QVFSTGDARIVLPCNLQRMIWNAQKIFRIDKRKPSDLDPINVVSGV 927
Query: 187 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
L R ++ ++ +S+ A NATLL + +R
Sbjct: 928 RDLCQRLTIVEGED---------------------------MISKQANENATLLMKCLIR 960
Query: 367 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
++L +K V EHRL+ AF WLL EIE RFQQA A GEMVGA AAQS+GEPATQMTLNT
Sbjct: 961 STLCAKRVAEEHRLSEDAFNWLLGEIETRFQQAQAHPGEMVGALAAQSLGEPATQMTLNT 1020
[61][TOP]
>UniRef100_A9QMP3 DNA-directed RNA polymerase (Fragment) n=1 Tax=Rhabditis brassicae
RepID=A9QMP3_9BILA
Length = 406
Score = 140 bits (354), Expect = 5e-32
Identities = 76/181 (41%), Positives = 111/181 (61%)
Frame = +1
Query: 4 KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
+EW QL++DR LR ++F G AK+ L N++RL+WNA++IF V +DL+P +++ G
Sbjct: 163 QEWGQLEEDRRLLR-KIFPNGNAKIVLPCNLQRLLWNAQKIFHVETRKPTDLNPLRVIEG 221
Query: 184 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
V L + +++ + +S+ AQ NATLL + V
Sbjct: 222 VRELSQKLIIVSGEN---------------------------RISKQAQYNATLLMNILV 254
Query: 364 RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
R++L SK + S+++L +AF WLL E+E RF+QA+A GEMVGA AAQS+GEPATQMTLN
Sbjct: 255 RSTLCSKKMASKYKLNSEAFEWLLGEVETRFKQAIAQPGEMVGALAAQSLGEPATQMTLN 314
Query: 544 T 546
T
Sbjct: 315 T 315
[62][TOP]
>UniRef100_A9QMF2 DNA-directed RNA polymerase (Fragment) n=1 Tax=Pelodera teres
RepID=A9QMF2_9PELO
Length = 629
Score = 140 bits (354), Expect = 5e-32
Identities = 79/181 (43%), Positives = 110/181 (60%)
Frame = +1
Query: 4 KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
+EW QL++DR LR ++F GE+K+ L N++RLIWNA++IF V + L+P ++V+G
Sbjct: 159 EEWQQLEEDRRLLR-KIFPKGESKVVLPCNLQRLIWNAQKIFKVETRKVTALNPLRVVQG 217
Query: 184 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
V L + ++ D+ +S+ AQ NATLL + +
Sbjct: 218 VRDLSKKLIIVMGDD---------------------------RISKQAQYNATLLVNILI 250
Query: 364 RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
R++L SK + +HRL AF WLL EIE+RFQQA+ GEMVGA AAQS+GEPATQMTLN
Sbjct: 251 RSTLCSKQMSEKHRLNESAFDWLLGEIEHRFQQAIVQPGEMVGALAAQSLGEPATQMTLN 310
Query: 544 T 546
T
Sbjct: 311 T 311
[63][TOP]
>UniRef100_Q4P7Q0 DNA-directed RNA polymerase n=1 Tax=Ustilago maydis
RepID=Q4P7Q0_USTMA
Length = 1774
Score = 140 bits (354), Expect = 5e-32
Identities = 76/181 (41%), Positives = 117/181 (64%)
Frame = +1
Query: 4 KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
+E+AQL+ DR+ LRHE+F++ + ++ L +N+ RL+ NA++IF V +DLSP++++ G
Sbjct: 942 EEFAQLEFDRNLLRHEIFQSDQVQVRLPMNVARLVLNAQQIFHVDPRKPTDLSPAEVIIG 1001
Query: 184 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
+ +L R V+ D D I+RE AQ+NATLLF++H+
Sbjct: 1002 LRNVLDRLIVIRGD-----DPISRE----------------------AQMNATLLFKIHL 1034
Query: 364 RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
R+ L SK+V+ +H + ++A+ W+L EIE +F +++A GEM G AAQSIGEPATQMTLN
Sbjct: 1035 RSYLCSKMVIEQHHINKEAWEWILGEIEGQFARSVANPGEMCGTLAAQSIGEPATQMTLN 1094
Query: 544 T 546
T
Sbjct: 1095 T 1095
[64][TOP]
>UniRef100_UPI0000546D90 PREDICTED: im:7136071 isoform 1 n=1 Tax=Danio rerio
RepID=UPI0000546D90
Length = 1972
Score = 140 bits (353), Expect = 6e-32
Identities = 76/181 (41%), Positives = 114/181 (62%)
Frame = +1
Query: 4 KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
+E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++IF + +DL+P+++V G
Sbjct: 951 REFEKMREDREILR-AIFPTGDSKVVLPCNLARMIWNAQKIFRINPRAPTDLNPARVVDG 1009
Query: 184 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
V+ L + ++ D+ +LS AQ NATLLF +H+
Sbjct: 1010 VKELSKKLVIVNGDD---------------------------QLSRQAQENATLLFNIHL 1042
Query: 364 RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
R++L SK + E RL+ +AF WLL EIE +F Q++A GEMVGA AAQS+GEPATQMTLN
Sbjct: 1043 RSTLCSKRMTEEFRLSTEAFDWLLGEIETKFNQSIAHPGEMVGALAAQSLGEPATQMTLN 1102
Query: 544 T 546
T
Sbjct: 1103 T 1103
[65][TOP]
>UniRef100_Q9NJN3 RNA polymerase II largest subunit (Fragment) n=1 Tax=Armadillidium
vulgare RepID=Q9NJN3_ARMVU
Length = 433
Score = 140 bits (353), Expect = 6e-32
Identities = 79/180 (43%), Positives = 109/180 (60%)
Frame = +1
Query: 7 EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
EW +L++DR LR +VF G+ K+ L N+ER+IWN ++IF + + ++DLSP K+V GV
Sbjct: 112 EWQKLQEDRVALR-QVFPKGDTKVVLPCNLERMIWNVQKIFHINKRMQTDLSPIKVVEGV 170
Query: 187 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
L + +++ ++ +S A NATLLF VR
Sbjct: 171 NETLRKCMIVSGED---------------------------RISVQANENATLLFHCLVR 203
Query: 367 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
++L +K V E+RLT +AF WL+ EIE RF QA+A GEMVGA AAQS+GEPATQMTLNT
Sbjct: 204 STLCTKKVSEEYRLTTEAFNWLMGEIETRFNQAIANPGEMVGALAAQSLGEPATQMTLNT 263
[66][TOP]
>UniRef100_Q6JU60 DNA-directed RNA polymerase (Fragment) n=1 Tax=Armadillidium
vulgare RepID=Q6JU60_ARMVU
Length = 736
Score = 140 bits (353), Expect = 6e-32
Identities = 79/180 (43%), Positives = 109/180 (60%)
Frame = +1
Query: 7 EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
EW +L++DR LR +VF G+ K+ L N+ER+IWN ++IF + + ++DLSP K+V GV
Sbjct: 415 EWQKLQEDRVALR-QVFPKGDTKVVLPCNLERMIWNVQKIFHINKRMQTDLSPIKVVEGV 473
Query: 187 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
L + +++ ++ +S A NATLLF VR
Sbjct: 474 NETLRKCMIVSGED---------------------------RISVQANENATLLFHCLVR 506
Query: 367 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
++L +K V E+RLT +AF WL+ EIE RF QA+A GEMVGA AAQS+GEPATQMTLNT
Sbjct: 507 STLCTKKVSEEYRLTTEAFNWLMGEIETRFNQAIANPGEMVGALAAQSLGEPATQMTLNT 566
[67][TOP]
>UniRef100_Q17085 DNA-directed RNA polymerase (Fragment) n=1 Tax=Artemia salina
RepID=Q17085_ARTSA
Length = 1341
Score = 140 bits (353), Expect = 6e-32
Identities = 84/181 (46%), Positives = 112/181 (61%)
Frame = +1
Query: 4 KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
KEW L KDR+ LR +VF +GE K+ L N++R+IWNA++ F + + SDLSP ++++G
Sbjct: 866 KEWEALVKDREALR-KVFPSGENKVVLPCNLQRMIWNAQKTFHINKRMPSDLSPLRVIQG 924
Query: 184 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
V LL + V+ + ED +LS+ A NATLLFQ V
Sbjct: 925 VRDLL-KNCVIVNGED--------------------------KLSKQANENATLLFQCLV 957
Query: 364 RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
R++L +K + E+RL +AF WL+ EIE RFQ A A GEMVGA AAQS+GEPATQMTLN
Sbjct: 958 RSTLCTKRLADEYRLNTEAFEWLIGEIETRFQLAQAVPGEMVGAIAAQSLGEPATQMTLN 1017
Query: 544 T 546
T
Sbjct: 1018 T 1018
[68][TOP]
>UniRef100_A9QMF9 DNA-directed RNA polymerase (Fragment) n=1 Tax=Rhabditis rainai
RepID=A9QMF9_9BILA
Length = 618
Score = 140 bits (353), Expect = 6e-32
Identities = 78/180 (43%), Positives = 111/180 (61%)
Frame = +1
Query: 7 EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
EWAQL++DR LR ++F TG AK+ L N++RLIWN ++IF V + L+P K++ GV
Sbjct: 155 EWAQLEEDRRLLR-KIFPTGNAKVVLPCNLQRLIWNXQKIFRVETRKPTSLNPLKVISGV 213
Query: 187 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
+ L + +++ D+ +S+ AQ NATLL + +R
Sbjct: 214 QELSKKLIIVSGDDS---------------------------ISKQAQYNATLLMNILLR 246
Query: 367 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
++L SK + S ++L +AF WLL E+E RF+QA+A GEMVGA AAQS+GEPATQMTLNT
Sbjct: 247 STLCSKRMASMYKLNSEAFEWLLGEVETRFKQAIAQPGEMVGALAAQSLGEPATQMTLNT 306
[69][TOP]
>UniRef100_UPI00017B0A92 UPI00017B0A92 related cluster n=1 Tax=Tetraodon nigroviridis
RepID=UPI00017B0A92
Length = 1714
Score = 140 bits (352), Expect = 8e-32
Identities = 77/181 (42%), Positives = 110/181 (60%)
Frame = +1
Query: 4 KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
+E+ ++K+DR+ LR +F TG++K+ L N+ R+IWNA++IF + +DLSP ++V G
Sbjct: 932 REFEKMKEDREILR-AIFPTGDSKVVLPCNLARMIWNAQKIFRINTRTPTDLSPLRVVEG 990
Query: 184 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
L + ++ D+ LS AQ NATLLF +H+
Sbjct: 991 THELSKKLVIVNGDDP---------------------------LSRQAQQNATLLFNIHL 1023
Query: 364 RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
R++L SK + E RL+ +AF WLL EIE +F Q++A GEMVGA AAQS+GEPATQMTLN
Sbjct: 1024 RSTLCSKRMTEEFRLSTEAFDWLLGEIETKFNQSIAHPGEMVGALAAQSLGEPATQMTLN 1083
Query: 544 T 546
T
Sbjct: 1084 T 1084
[70][TOP]
>UniRef100_B7PJA3 DNA-directed RNA polymerase (Fragment) n=1 Tax=Ixodes scapularis
RepID=B7PJA3_IXOSC
Length = 1937
Score = 140 bits (352), Expect = 8e-32
Identities = 80/181 (44%), Positives = 111/181 (61%)
Frame = +1
Query: 4 KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
KEW +LK+DR+ LR +F TG++K+ L N++R++WNA++IF V +DLSP ++V+G
Sbjct: 954 KEWERLKRDREALR-TIFPTGDSKVVLPCNLQRMLWNAQKIFRVNLRSPTDLSPLRVVQG 1012
Query: 184 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
VE L+ + ++ ++ LS A NATLLF+ +
Sbjct: 1013 VEELVKKLVIVPGED---------------------------HLSIQANENATLLFRSLL 1045
Query: 364 RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
RA+L SK V E RL+ ++F WLL EIE RF Q+ GEMVGA AAQS+GEPATQMTLN
Sbjct: 1046 RATLCSKRVAEEFRLSTESFEWLLGEIETRFHQSQGQPGEMVGALAAQSLGEPATQMTLN 1105
Query: 544 T 546
T
Sbjct: 1106 T 1106
[71][TOP]
>UniRef100_A9QMG1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Oscheius
dolichuroides RepID=A9QMG1_9BILA
Length = 629
Score = 140 bits (352), Expect = 8e-32
Identities = 77/180 (42%), Positives = 111/180 (61%)
Frame = +1
Query: 7 EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
EWAQL++DR LR +++ TGE+K L N++RLIWNA++IF V + + L+P ++RGV
Sbjct: 167 EWAQLEEDRRLLR-KIYATGESKCVLPCNLQRLIWNAQKIFHVEKREPVCLNPLNVIRGV 225
Query: 187 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
L + ++ D+ +S+ AQ NATLL + +R
Sbjct: 226 RSLSEKLIIVGGDD---------------------------RISKQAQYNATLLMNILLR 258
Query: 367 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
++L +K + + H+L ++AF WLL EIE RF+ A+A GEMVGA AAQS+GEPATQMTLNT
Sbjct: 259 STLCAKKMATTHKLNQEAFEWLLGEIETRFKAAIAQPGEMVGALAAQSLGEPATQMTLNT 318
[72][TOP]
>UniRef100_Q7Q3C6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Anopheles gambiae
RepID=Q7Q3C6_ANOGA
Length = 1878
Score = 139 bits (351), Expect = 1e-31
Identities = 79/180 (43%), Positives = 108/180 (60%)
Frame = +1
Query: 7 EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
E+ QL +DR+ LR ++F G++K+ L N++R+IWN ++IF + + +DLSP K+++GV
Sbjct: 945 EYEQLLRDREALR-QIFPNGDSKVVLPCNLQRMIWNVQKIFHINKRSPTDLSPLKVIQGV 1003
Query: 187 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
LL R ++ + LS+ A NATLLFQ VR
Sbjct: 1004 RDLLQRCVIVAGTD---------------------------RLSKQANENATLLFQCLVR 1036
Query: 367 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
++L +K V E RL +AF WL+ EIE RFQQA GEMVGA AAQS+GEPATQMTLNT
Sbjct: 1037 STLCTKYVAEEFRLNNEAFEWLIGEIETRFQQAQCNPGEMVGALAAQSLGEPATQMTLNT 1096
[73][TOP]
>UniRef100_A9QMG8 RNA polymerase 2 (Fragment) n=1 Tax=rhabditoid sp. PDL15
RepID=A9QMG8_9BILA
Length = 587
Score = 139 bits (351), Expect = 1e-31
Identities = 77/180 (42%), Positives = 110/180 (61%)
Frame = +1
Query: 7 EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
EW QL++DR LR ++F G++K+ L N++RLIWNA++IF V ++L+P +++ GV
Sbjct: 148 EWXQLEEDRXLLR-KIFPKGDSKVVLPCNLQRLIWNAQKIFHVETRKXTELNPLRVIEGV 206
Query: 187 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
L + ++ ++ +S+ AQ NATLL + +R
Sbjct: 207 RDLSKKLVIVXGED---------------------------RISKQAQYNATLLMNILLR 239
Query: 367 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
++L SK V ++RL +AF WLL EIE RFQQA+A GEMVGA AAQS+GEPATQMTLNT
Sbjct: 240 STLCSKQVAEKYRLNSEAFEWLLGEIETRFQQAIAQPGEMVGALAAQSLGEPATQMTLNT 299
[74][TOP]
>UniRef100_Q9C428 DNA-directed RNA polymerase (Fragment) n=1 Tax=Monoblepharis
macrandra RepID=Q9C428_9FUNG
Length = 1603
Score = 139 bits (350), Expect = 1e-31
Identities = 82/180 (45%), Positives = 105/180 (58%)
Frame = +1
Query: 7 EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
E+ QL +DR+ +R+ +F+ G++ PL NI RLIWNA+ + + N S+L P +IVR V
Sbjct: 877 EYTQLVEDRNVMRNFIFRNGDSNWPLPSNIRRLIWNARNMAKISHNTLSNLRPEEIVRDV 936
Query: 187 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
LL R V+T ++ LS AQ NATLLF + VR
Sbjct: 937 NDLLSRCIVITGEDG---------------------------LSTMAQHNATLLFNILVR 969
Query: 367 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
LA+K V +EHRL R AF WL+ EIE+RF+ A EMVG AAQSIGEPATQMTLNT
Sbjct: 970 HLLATKRVYAEHRLNRNAFRWLIGEIESRFKAAKVNPAEMVGTIAAQSIGEPATQMTLNT 1029
[75][TOP]
>UniRef100_P91819 DNA-directed RNA polymerase (Fragment) n=1 Tax=Zeldia punctata
RepID=P91819_ZELPU
Length = 629
Score = 139 bits (349), Expect = 2e-31
Identities = 82/180 (45%), Positives = 108/180 (60%)
Frame = +1
Query: 7 EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
EW QL++DR LR ++F G+AK+ L N++RLIWNA +IF V DL+P ++V GV
Sbjct: 157 EWQQLEEDRRLLR-KIFPKGDAKVHLPCNLKRLIWNAHKIFHVDLKKPVDLNPLRVVEGV 215
Query: 187 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
L ++ V+ S ED +S+ AQ NATLL + +R
Sbjct: 216 REL-NKKLVIVSGED--------------------------RISKQAQYNATLLMNILLR 248
Query: 367 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
++L SK V H+L +AF W+L EIE RF QA+A GEMVGA AAQS+GEPATQMTLNT
Sbjct: 249 STLCSKQVAKVHKLNTEAFEWILGEIETRFNQAIAQPGEMVGALAAQSLGEPATQMTLNT 308
[76][TOP]
>UniRef100_A9QMP7 RNA polymerase 2 (Fragment) n=1 Tax=Rhabditoides inermis
RepID=A9QMP7_9BILA
Length = 440
Score = 139 bits (349), Expect = 2e-31
Identities = 78/180 (43%), Positives = 108/180 (60%)
Frame = +1
Query: 7 EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
EWAQL++DR LR ++F G+AK+ L N++RLIWNA++IF V +DL P +++ GV
Sbjct: 119 EWAQLEEDRRLLR-KIFPKGDAKIVLPCNLQRLIWNAQKIFHVETRKPTDLHPLRVIEGV 177
Query: 187 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
+ + ++ ED +S+ AQ NATLL + VR
Sbjct: 178 RDMAKKL-IIVGGED--------------------------RISKQAQYNATLLMNILVR 210
Query: 367 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
++L SK + ++L +AF WLL E+E RFQQA+A GEMVG AAQS+GEPATQMTLNT
Sbjct: 211 STLCSKKMAEHYKLNSEAFEWLLGEVETRFQQAIAQPGEMVGPLAAQSLGEPATQMTLNT 270
[77][TOP]
>UniRef100_A9QMF5 DNA-directed RNA polymerase (Fragment) n=1 Tax=Rhabditoides inermis
RepID=A9QMF5_9BILA
Length = 630
Score = 139 bits (349), Expect = 2e-31
Identities = 78/180 (43%), Positives = 108/180 (60%)
Frame = +1
Query: 7 EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
EWAQL++DR LR ++F G+AK+ L N++RLIWNA++IF V +DL P +++ GV
Sbjct: 156 EWAQLEEDRRLLR-KIFPKGDAKIVLPCNLQRLIWNAQKIFHVETRKPTDLHPLRVIEGV 214
Query: 187 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
+ + ++ ED +S+ AQ NATLL + VR
Sbjct: 215 RDMAKKL-IIVGGED--------------------------RISKQAQYNATLLMNILVR 247
Query: 367 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
++L SK + ++L +AF WLL E+E RFQQA+A GEMVG AAQS+GEPATQMTLNT
Sbjct: 248 STLCSKKMAEHYKLNSEAFEWLLGEVETRFQQAIAQPGEMVGPLAAQSLGEPATQMTLNT 307
[78][TOP]
>UniRef100_B4E3V7 DNA-directed RNA polymerase n=1 Tax=Homo sapiens RepID=B4E3V7_HUMAN
Length = 1935
Score = 139 bits (349), Expect = 2e-31
Identities = 78/181 (43%), Positives = 112/181 (61%)
Frame = +1
Query: 4 KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
+E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++IF + SDL P K+V G
Sbjct: 919 REFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEG 977
Query: 184 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
V+ L + ++ D+ LS AQ NATLLF +H+
Sbjct: 978 VKKLSKKLVIVNGDDP---------------------------LSRQAQENATLLFNIHL 1010
Query: 364 RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
R++L S+ + E RL+ +AF WLL EIE++F QA+A GEMVGA AAQS+GEPATQMTLN
Sbjct: 1011 RSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMTLN 1070
Query: 544 T 546
T
Sbjct: 1071 T 1071
[79][TOP]
>UniRef100_UPI0001796DD3 PREDICTED: similar to DNA-directed RNA polymerase II subunit RPB1
(RNA polymerase II subunit B1) (DNA-directed RNA
polymerase II subunit A) (DNA-directed RNA polymerase III
largest subunit) n=1 Tax=Equus caballus
RepID=UPI0001796DD3
Length = 1834
Score = 138 bits (348), Expect = 2e-31
Identities = 78/181 (43%), Positives = 112/181 (61%)
Frame = +1
Query: 4 KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
+E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++IF + SDL P K+V G
Sbjct: 954 REFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEG 1012
Query: 184 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
V+ L + ++ D+ LS AQ NATLLF +H+
Sbjct: 1013 VKELSKKLVIVNGDDP---------------------------LSRQAQENATLLFNIHL 1045
Query: 364 RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
R++L S+ + E RL+ +AF WLL EIE++F QA+A GEMVGA AAQS+GEPATQMTLN
Sbjct: 1046 RSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMTLN 1105
Query: 544 T 546
T
Sbjct: 1106 T 1106
[80][TOP]
>UniRef100_UPI0000EBDCD2 PREDICTED: polymerase (RNA) II (DNA directed) polypeptide A, 220kDa
isoform 4 n=1 Tax=Bos taurus RepID=UPI0000EBDCD2
Length = 1970
Score = 138 bits (348), Expect = 2e-31
Identities = 78/181 (43%), Positives = 112/181 (61%)
Frame = +1
Query: 4 KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
+E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++IF + SDL P K+V G
Sbjct: 954 REFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEG 1012
Query: 184 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
V+ L + ++ D+ LS AQ NATLLF +H+
Sbjct: 1013 VKELSKKLVIVNGDDP---------------------------LSRQAQENATLLFNIHL 1045
Query: 364 RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
R++L S+ + E RL+ +AF WLL EIE++F QA+A GEMVGA AAQS+GEPATQMTLN
Sbjct: 1046 RSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMTLN 1105
Query: 544 T 546
T
Sbjct: 1106 T 1106
[81][TOP]
>UniRef100_UPI0000E24648 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
(RPB1) n=1 Tax=Pan troglodytes RepID=UPI0000E24648
Length = 1913
Score = 138 bits (348), Expect = 2e-31
Identities = 78/181 (43%), Positives = 112/181 (61%)
Frame = +1
Query: 4 KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
+E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++IF + SDL P K+V G
Sbjct: 954 REFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEG 1012
Query: 184 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
V+ L + ++ D+ LS AQ NATLLF +H+
Sbjct: 1013 VKELSKKLVIVNGDDP---------------------------LSRQAQENATLLFNIHL 1045
Query: 364 RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
R++L S+ + E RL+ +AF WLL EIE++F QA+A GEMVGA AAQS+GEPATQMTLN
Sbjct: 1046 RSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMTLN 1105
Query: 544 T 546
T
Sbjct: 1106 T 1106
[82][TOP]
>UniRef100_UPI00005A0B2C PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
(RPB1) isoform 23 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B2C
Length = 1888
Score = 138 bits (348), Expect = 2e-31
Identities = 78/181 (43%), Positives = 112/181 (61%)
Frame = +1
Query: 4 KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
+E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++IF + SDL P K+V G
Sbjct: 954 REFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEG 1012
Query: 184 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
V+ L + ++ D+ LS AQ NATLLF +H+
Sbjct: 1013 VKELSKKLVIVNGDDP---------------------------LSRQAQENATLLFNIHL 1045
Query: 364 RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
R++L S+ + E RL+ +AF WLL EIE++F QA+A GEMVGA AAQS+GEPATQMTLN
Sbjct: 1046 RSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMTLN 1105
Query: 544 T 546
T
Sbjct: 1106 T 1106
[83][TOP]
>UniRef100_UPI00005A0B2B PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
(RPB1) isoform 22 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B2B
Length = 1892
Score = 138 bits (348), Expect = 2e-31
Identities = 78/181 (43%), Positives = 112/181 (61%)
Frame = +1
Query: 4 KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
+E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++IF + SDL P K+V G
Sbjct: 956 REFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEG 1014
Query: 184 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
V+ L + ++ D+ LS AQ NATLLF +H+
Sbjct: 1015 VKELSKKLVIVNGDDP---------------------------LSRQAQENATLLFNIHL 1047
Query: 364 RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
R++L S+ + E RL+ +AF WLL EIE++F QA+A GEMVGA AAQS+GEPATQMTLN
Sbjct: 1048 RSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMTLN 1107
Query: 544 T 546
T
Sbjct: 1108 T 1108
[84][TOP]
>UniRef100_UPI00005A0B2A PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
(RPB1) isoform 21 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B2A
Length = 1896
Score = 138 bits (348), Expect = 2e-31
Identities = 78/181 (43%), Positives = 112/181 (61%)
Frame = +1
Query: 4 KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
+E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++IF + SDL P K+V G
Sbjct: 956 REFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEG 1014
Query: 184 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
V+ L + ++ D+ LS AQ NATLLF +H+
Sbjct: 1015 VKELSKKLVIVNGDDP---------------------------LSRQAQENATLLFNIHL 1047
Query: 364 RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
R++L S+ + E RL+ +AF WLL EIE++F QA+A GEMVGA AAQS+GEPATQMTLN
Sbjct: 1048 RSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMTLN 1107
Query: 544 T 546
T
Sbjct: 1108 T 1108
[85][TOP]
>UniRef100_UPI00005A0B29 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
(RPB1) isoform 20 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B29
Length = 1891
Score = 138 bits (348), Expect = 2e-31
Identities = 78/181 (43%), Positives = 112/181 (61%)
Frame = +1
Query: 4 KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
+E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++IF + SDL P K+V G
Sbjct: 923 REFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEG 981
Query: 184 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
V+ L + ++ D+ LS AQ NATLLF +H+
Sbjct: 982 VKELSKKLVIVNGDDP---------------------------LSRQAQENATLLFNIHL 1014
Query: 364 RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
R++L S+ + E RL+ +AF WLL EIE++F QA+A GEMVGA AAQS+GEPATQMTLN
Sbjct: 1015 RSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMTLN 1074
Query: 544 T 546
T
Sbjct: 1075 T 1075
[86][TOP]
>UniRef100_UPI00005A0B28 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
(RPB1) isoform 19 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B28
Length = 1908
Score = 138 bits (348), Expect = 2e-31
Identities = 78/181 (43%), Positives = 112/181 (61%)
Frame = +1
Query: 4 KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
+E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++IF + SDL P K+V G
Sbjct: 940 REFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEG 998
Query: 184 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
V+ L + ++ D+ LS AQ NATLLF +H+
Sbjct: 999 VKELSKKLVIVNGDDP---------------------------LSRQAQENATLLFNIHL 1031
Query: 364 RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
R++L S+ + E RL+ +AF WLL EIE++F QA+A GEMVGA AAQS+GEPATQMTLN
Sbjct: 1032 RSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMTLN 1091
Query: 544 T 546
T
Sbjct: 1092 T 1092
[87][TOP]
>UniRef100_UPI00005A0B27 PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide
A isoform 18 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B27
Length = 1831
Score = 138 bits (348), Expect = 2e-31
Identities = 78/181 (43%), Positives = 112/181 (61%)
Frame = +1
Query: 4 KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
+E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++IF + SDL P K+V G
Sbjct: 954 REFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEG 1012
Query: 184 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
V+ L + ++ D+ LS AQ NATLLF +H+
Sbjct: 1013 VKELSKKLVIVNGDDP---------------------------LSRQAQENATLLFNIHL 1045
Query: 364 RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
R++L S+ + E RL+ +AF WLL EIE++F QA+A GEMVGA AAQS+GEPATQMTLN
Sbjct: 1046 RSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMTLN 1105
Query: 544 T 546
T
Sbjct: 1106 T 1106
[88][TOP]
>UniRef100_UPI00005A0B26 PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide
A isoform 17 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B26
Length = 1684
Score = 138 bits (348), Expect = 2e-31
Identities = 78/181 (43%), Positives = 112/181 (61%)
Frame = +1
Query: 4 KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
+E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++IF + SDL P K+V G
Sbjct: 944 REFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEG 1002
Query: 184 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
V+ L + ++ D+ LS AQ NATLLF +H+
Sbjct: 1003 VKELSKKLVIVNGDDP---------------------------LSRQAQENATLLFNIHL 1035
Query: 364 RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
R++L S+ + E RL+ +AF WLL EIE++F QA+A GEMVGA AAQS+GEPATQMTLN
Sbjct: 1036 RSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMTLN 1095
Query: 544 T 546
T
Sbjct: 1096 T 1096
[89][TOP]
>UniRef100_UPI00005A0B25 PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide
A isoform 16 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B25
Length = 1752
Score = 138 bits (348), Expect = 2e-31
Identities = 78/181 (43%), Positives = 112/181 (61%)
Frame = +1
Query: 4 KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
+E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++IF + SDL P K+V G
Sbjct: 944 REFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEG 1002
Query: 184 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
V+ L + ++ D+ LS AQ NATLLF +H+
Sbjct: 1003 VKELSKKLVIVNGDDP---------------------------LSRQAQENATLLFNIHL 1035
Query: 364 RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
R++L S+ + E RL+ +AF WLL EIE++F QA+A GEMVGA AAQS+GEPATQMTLN
Sbjct: 1036 RSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMTLN 1095
Query: 544 T 546
T
Sbjct: 1096 T 1096
[90][TOP]
>UniRef100_UPI00005A0B24 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
(RPB1) isoform 15 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B24
Length = 1924
Score = 138 bits (348), Expect = 2e-31
Identities = 78/181 (43%), Positives = 112/181 (61%)
Frame = +1
Query: 4 KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
+E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++IF + SDL P K+V G
Sbjct: 956 REFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEG 1014
Query: 184 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
V+ L + ++ D+ LS AQ NATLLF +H+
Sbjct: 1015 VKELSKKLVIVNGDDP---------------------------LSRQAQENATLLFNIHL 1047
Query: 364 RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
R++L S+ + E RL+ +AF WLL EIE++F QA+A GEMVGA AAQS+GEPATQMTLN
Sbjct: 1048 RSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMTLN 1107
Query: 544 T 546
T
Sbjct: 1108 T 1108
[91][TOP]
>UniRef100_UPI00005A0B23 PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide
A isoform 14 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B23
Length = 1653
Score = 138 bits (348), Expect = 2e-31
Identities = 78/181 (43%), Positives = 112/181 (61%)
Frame = +1
Query: 4 KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
+E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++IF + SDL P K+V G
Sbjct: 927 REFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEG 985
Query: 184 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
V+ L + ++ D+ LS AQ NATLLF +H+
Sbjct: 986 VKELSKKLVIVNGDDP---------------------------LSRQAQENATLLFNIHL 1018
Query: 364 RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
R++L S+ + E RL+ +AF WLL EIE++F QA+A GEMVGA AAQS+GEPATQMTLN
Sbjct: 1019 RSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMTLN 1078
Query: 544 T 546
T
Sbjct: 1079 T 1079
[92][TOP]
>UniRef100_UPI00005A0B22 PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide
A isoform 13 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B22
Length = 1722
Score = 138 bits (348), Expect = 2e-31
Identities = 78/181 (43%), Positives = 112/181 (61%)
Frame = +1
Query: 4 KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
+E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++IF + SDL P K+V G
Sbjct: 927 REFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEG 985
Query: 184 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
V+ L + ++ D+ LS AQ NATLLF +H+
Sbjct: 986 VKELSKKLVIVNGDDP---------------------------LSRQAQENATLLFNIHL 1018
Query: 364 RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
R++L S+ + E RL+ +AF WLL EIE++F QA+A GEMVGA AAQS+GEPATQMTLN
Sbjct: 1019 RSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMTLN 1078
Query: 544 T 546
T
Sbjct: 1079 T 1079
[93][TOP]
>UniRef100_UPI00005A0B21 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
(RPB1) isoform 12 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B21
Length = 1922
Score = 138 bits (348), Expect = 2e-31
Identities = 78/181 (43%), Positives = 112/181 (61%)
Frame = +1
Query: 4 KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
+E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++IF + SDL P K+V G
Sbjct: 954 REFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEG 1012
Query: 184 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
V+ L + ++ D+ LS AQ NATLLF +H+
Sbjct: 1013 VKELSKKLVIVNGDDP---------------------------LSRQAQENATLLFNIHL 1045
Query: 364 RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
R++L S+ + E RL+ +AF WLL EIE++F QA+A GEMVGA AAQS+GEPATQMTLN
Sbjct: 1046 RSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMTLN 1105
Query: 544 T 546
T
Sbjct: 1106 T 1106
[94][TOP]
>UniRef100_UPI00005A0B20 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
(RPB1) isoform 11 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B20
Length = 1923
Score = 138 bits (348), Expect = 2e-31
Identities = 78/181 (43%), Positives = 112/181 (61%)
Frame = +1
Query: 4 KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
+E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++IF + SDL P K+V G
Sbjct: 955 REFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEG 1013
Query: 184 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
V+ L + ++ D+ LS AQ NATLLF +H+
Sbjct: 1014 VKELSKKLVIVNGDDP---------------------------LSRQAQENATLLFNIHL 1046
Query: 364 RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
R++L S+ + E RL+ +AF WLL EIE++F QA+A GEMVGA AAQS+GEPATQMTLN
Sbjct: 1047 RSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMTLN 1106
Query: 544 T 546
T
Sbjct: 1107 T 1107
[95][TOP]
>UniRef100_UPI00005A0B1F PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide
A isoform 10 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B1F
Length = 1840
Score = 138 bits (348), Expect = 2e-31
Identities = 78/181 (43%), Positives = 112/181 (61%)
Frame = +1
Query: 4 KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
+E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++IF + SDL P K+V G
Sbjct: 950 REFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEG 1008
Query: 184 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
V+ L + ++ D+ LS AQ NATLLF +H+
Sbjct: 1009 VKELSKKLVIVNGDDP---------------------------LSRQAQENATLLFNIHL 1041
Query: 364 RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
R++L S+ + E RL+ +AF WLL EIE++F QA+A GEMVGA AAQS+GEPATQMTLN
Sbjct: 1042 RSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMTLN 1101
Query: 544 T 546
T
Sbjct: 1102 T 1102
[96][TOP]
>UniRef100_UPI00005A0B1E PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide
A isoform 9 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B1E
Length = 1851
Score = 138 bits (348), Expect = 2e-31
Identities = 78/181 (43%), Positives = 112/181 (61%)
Frame = +1
Query: 4 KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
+E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++IF + SDL P K+V G
Sbjct: 950 REFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEG 1008
Query: 184 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
V+ L + ++ D+ LS AQ NATLLF +H+
Sbjct: 1009 VKELSKKLVIVNGDDP---------------------------LSRQAQENATLLFNIHL 1041
Query: 364 RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
R++L S+ + E RL+ +AF WLL EIE++F QA+A GEMVGA AAQS+GEPATQMTLN
Sbjct: 1042 RSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMTLN 1101
Query: 544 T 546
T
Sbjct: 1102 T 1102
[97][TOP]
>UniRef100_UPI00005A0B1D PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
(RPB1) isoform 1 n=2 Tax=Canis lupus familiaris
RepID=UPI00005A0B1D
Length = 1764
Score = 138 bits (348), Expect = 2e-31
Identities = 78/181 (43%), Positives = 112/181 (61%)
Frame = +1
Query: 4 KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
+E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++IF + SDL P K+V G
Sbjct: 972 REFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEG 1030
Query: 184 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
V+ L + ++ D+ LS AQ NATLLF +H+
Sbjct: 1031 VKELSKKLVIVNGDDP---------------------------LSRQAQENATLLFNIHL 1063
Query: 364 RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
R++L S+ + E RL+ +AF WLL EIE++F QA+A GEMVGA AAQS+GEPATQMTLN
Sbjct: 1064 RSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMTLN 1123
Query: 544 T 546
T
Sbjct: 1124 T 1124
[98][TOP]
>UniRef100_UPI00005A0B1C PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide
A isoform 8 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B1C
Length = 1719
Score = 138 bits (348), Expect = 2e-31
Identities = 78/181 (43%), Positives = 112/181 (61%)
Frame = +1
Query: 4 KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
+E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++IF + SDL P K+V G
Sbjct: 948 REFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEG 1006
Query: 184 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
V+ L + ++ D+ LS AQ NATLLF +H+
Sbjct: 1007 VKELSKKLVIVNGDDP---------------------------LSRQAQENATLLFNIHL 1039
Query: 364 RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
R++L S+ + E RL+ +AF WLL EIE++F QA+A GEMVGA AAQS+GEPATQMTLN
Sbjct: 1040 RSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMTLN 1099
Query: 544 T 546
T
Sbjct: 1100 T 1100
[99][TOP]
>UniRef100_UPI00005A0B1B PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide
A isoform 7 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B1B
Length = 1858
Score = 138 bits (348), Expect = 2e-31
Identities = 78/181 (43%), Positives = 112/181 (61%)
Frame = +1
Query: 4 KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
+E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++IF + SDL P K+V G
Sbjct: 948 REFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEG 1006
Query: 184 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
V+ L + ++ D+ LS AQ NATLLF +H+
Sbjct: 1007 VKELSKKLVIVNGDDP---------------------------LSRQAQENATLLFNIHL 1039
Query: 364 RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
R++L S+ + E RL+ +AF WLL EIE++F QA+A GEMVGA AAQS+GEPATQMTLN
Sbjct: 1040 RSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMTLN 1099
Query: 544 T 546
T
Sbjct: 1100 T 1100
[100][TOP]
>UniRef100_UPI00005A0B19 PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide
A isoform 5 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B19
Length = 1693
Score = 138 bits (348), Expect = 2e-31
Identities = 78/181 (43%), Positives = 112/181 (61%)
Frame = +1
Query: 4 KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
+E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++IF + SDL P K+V G
Sbjct: 940 REFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEG 998
Query: 184 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
V+ L + ++ D+ LS AQ NATLLF +H+
Sbjct: 999 VKELSKKLVIVNGDDP---------------------------LSRQAQENATLLFNIHL 1031
Query: 364 RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
R++L S+ + E RL+ +AF WLL EIE++F QA+A GEMVGA AAQS+GEPATQMTLN
Sbjct: 1032 RSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMTLN 1091
Query: 544 T 546
T
Sbjct: 1092 T 1092
[101][TOP]
>UniRef100_UPI00005A0B17 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
(RPB1) isoform 3 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B17
Length = 1788
Score = 138 bits (348), Expect = 2e-31
Identities = 78/181 (43%), Positives = 112/181 (61%)
Frame = +1
Query: 4 KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
+E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++IF + SDL P K+V G
Sbjct: 954 REFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEG 1012
Query: 184 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
V+ L + ++ D+ LS AQ NATLLF +H+
Sbjct: 1013 VKELSKKLVIVNGDDP---------------------------LSRQAQENATLLFNIHL 1045
Query: 364 RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
R++L S+ + E RL+ +AF WLL EIE++F QA+A GEMVGA AAQS+GEPATQMTLN
Sbjct: 1046 RSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMTLN 1105
Query: 544 T 546
T
Sbjct: 1106 T 1106
[102][TOP]
>UniRef100_UPI00005A0B16 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
(RPB1) isoform 2 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B16
Length = 1922
Score = 138 bits (348), Expect = 2e-31
Identities = 78/181 (43%), Positives = 112/181 (61%)
Frame = +1
Query: 4 KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
+E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++IF + SDL P K+V G
Sbjct: 954 REFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEG 1012
Query: 184 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
V+ L + ++ D+ LS AQ NATLLF +H+
Sbjct: 1013 VKELSKKLVIVNGDDP---------------------------LSRQAQENATLLFNIHL 1045
Query: 364 RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
R++L S+ + E RL+ +AF WLL EIE++F QA+A GEMVGA AAQS+GEPATQMTLN
Sbjct: 1046 RSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMTLN 1105
Query: 544 T 546
T
Sbjct: 1106 T 1106
[103][TOP]
>UniRef100_UPI0001B7A25C UPI0001B7A25C related cluster n=1 Tax=Rattus norvegicus
RepID=UPI0001B7A25C
Length = 1968
Score = 138 bits (348), Expect = 2e-31
Identities = 78/181 (43%), Positives = 112/181 (61%)
Frame = +1
Query: 4 KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
+E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++IF + SDL P K+V G
Sbjct: 956 REFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEG 1014
Query: 184 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
V+ L + ++ D+ LS AQ NATLLF +H+
Sbjct: 1015 VKELSKKLVIVNGDDP---------------------------LSRQAQENATLLFNIHL 1047
Query: 364 RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
R++L S+ + E RL+ +AF WLL EIE++F QA+A GEMVGA AAQS+GEPATQMTLN
Sbjct: 1048 RSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMTLN 1107
Query: 544 T 546
T
Sbjct: 1108 T 1108
[104][TOP]
>UniRef100_UPI0001B7A25B UPI0001B7A25B related cluster n=1 Tax=Rattus norvegicus
RepID=UPI0001B7A25B
Length = 1932
Score = 138 bits (348), Expect = 2e-31
Identities = 78/181 (43%), Positives = 112/181 (61%)
Frame = +1
Query: 4 KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
+E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++IF + SDL P K+V G
Sbjct: 954 REFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEG 1012
Query: 184 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
V+ L + ++ D+ LS AQ NATLLF +H+
Sbjct: 1013 VKELSKKLVIVNGDDP---------------------------LSRQAQENATLLFNIHL 1045
Query: 364 RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
R++L S+ + E RL+ +AF WLL EIE++F QA+A GEMVGA AAQS+GEPATQMTLN
Sbjct: 1046 RSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMTLN 1105
Query: 544 T 546
T
Sbjct: 1106 T 1106
[105][TOP]
>UniRef100_UPI0000DA33D8 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
(RPB1) n=1 Tax=Rattus norvegicus RepID=UPI0000DA33D8
Length = 1970
Score = 138 bits (348), Expect = 2e-31
Identities = 78/181 (43%), Positives = 112/181 (61%)
Frame = +1
Query: 4 KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
+E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++IF + SDL P K+V G
Sbjct: 954 REFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEG 1012
Query: 184 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
V+ L + ++ D+ LS AQ NATLLF +H+
Sbjct: 1013 VKELSKKLVIVNGDDP---------------------------LSRQAQENATLLFNIHL 1045
Query: 364 RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
R++L S+ + E RL+ +AF WLL EIE++F QA+A GEMVGA AAQS+GEPATQMTLN
Sbjct: 1046 RSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMTLN 1105
Query: 544 T 546
T
Sbjct: 1106 T 1106
[106][TOP]
>UniRef100_UPI0001951285 220 kDa DNA-directed RNA polymerase polypeptide A n=1 Tax=Canis lupus
familiaris RepID=UPI0001951285
Length = 1969
Score = 138 bits (348), Expect = 2e-31
Identities = 78/181 (43%), Positives = 112/181 (61%)
Frame = +1
Query: 4 KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
+E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++IF + SDL P K+V G
Sbjct: 954 REFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEG 1012
Query: 184 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
V+ L + ++ D+ LS AQ NATLLF +H+
Sbjct: 1013 VKELSKKLVIVNGDDP---------------------------LSRQAQENATLLFNIHL 1045
Query: 364 RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
R++L S+ + E RL+ +AF WLL EIE++F QA+A GEMVGA AAQS+GEPATQMTLN
Sbjct: 1046 RSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMTLN 1105
Query: 544 T 546
T
Sbjct: 1106 T 1106
[107][TOP]
>UniRef100_O08847 DNA-directed RNA polymerase n=1 Tax=Mus musculus RepID=O08847_MOUSE
Length = 1966
Score = 138 bits (348), Expect = 2e-31
Identities = 78/181 (43%), Positives = 112/181 (61%)
Frame = +1
Query: 4 KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
+E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++IF + SDL P K+V G
Sbjct: 954 REFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEG 1012
Query: 184 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
V+ L + ++ D+ LS AQ NATLLF +H+
Sbjct: 1013 VKELSKKLVIVNGDDP---------------------------LSRQAQENATLLFNIHL 1045
Query: 364 RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
R++L S+ + E RL+ +AF WLL EIE++F QA+A GEMVGA AAQS+GEPATQMTLN
Sbjct: 1046 RSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMTLN 1105
Query: 544 T 546
T
Sbjct: 1106 T 1106
[108][TOP]
>UniRef100_O01370 DNA-directed RNA polymerase (Fragment) n=1 Tax=Mesorhabditis sp.
RepID=O01370_9BILA
Length = 633
Score = 138 bits (348), Expect = 2e-31
Identities = 76/181 (41%), Positives = 111/181 (61%)
Frame = +1
Query: 4 KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
+EW +L+ DR LR ++F G+ K+ L N++RLIWNA++IF V ++LSP +++ G
Sbjct: 159 EEWERLEDDRRLLR-KIFPKGDKKVVLPCNLQRLIWNAQKIFKVETRKPTNLSPLRVIEG 217
Query: 184 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
V L + +++ D+ +S+ AQ NATLL + +
Sbjct: 218 VRELSKKLIIVSGDD---------------------------RISQQAQYNATLLMNILL 250
Query: 364 RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
R++L SK + ++RL ++ F WLL EIE+RFQQA+A GEMVGA AAQS+GEPATQMTLN
Sbjct: 251 RSTLCSKQMAEKYRLNQEGFEWLLGEIEHRFQQAIAQPGEMVGALAAQSLGEPATQMTLN 310
Query: 544 T 546
T
Sbjct: 311 T 311
[109][TOP]
>UniRef100_B4YT42 DNA-directed RNA polymerase (Fragment) n=1 Tax=Amphizoa lecontei
RepID=B4YT42_AMPLE
Length = 562
Score = 138 bits (348), Expect = 2e-31
Identities = 77/175 (44%), Positives = 105/175 (60%)
Frame = +1
Query: 4 KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
+EW QL KDR+ LR ++F TGE+K+ L N++R+IWN ++IF + + +DLSP ++++G
Sbjct: 416 REWDQLSKDREALR-QIFPTGESKVVLPCNLQRMIWNVQKIFHINKRATTDLSPLRVIQG 474
Query: 184 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
V LL + ++ D+ LS A NATLLFQ V
Sbjct: 475 VRQLLQKCIIVAGDD---------------------------RLSRQANENATLLFQCLV 507
Query: 364 RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPAT 528
RA+L +K V E RL+ +AF WL+ EIE RFQQA GEMVGA AAQS+GEPAT
Sbjct: 508 RATLCTKCVSEEFRLSTEAFEWLIGEIETRFQQAQCAPGEMVGALAAQSLGEPAT 562
[110][TOP]
>UniRef100_A9QMH1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Acrobeles maximus
RepID=A9QMH1_9BILA
Length = 616
Score = 138 bits (348), Expect = 2e-31
Identities = 80/180 (44%), Positives = 108/180 (60%)
Frame = +1
Query: 7 EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
EW QL++DR LR ++F GE+K+ L N++RLIWNA++IF V DL+P +++ GV
Sbjct: 164 EWQQLEEDRRLLR-KIFPKGESKVHLPCNLKRLIWNAQKIFHVDLRKTVDLNPVRVIEGV 222
Query: 187 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
L + ++ S ED +S+ AQ NATLL + +R
Sbjct: 223 RELSKKL-IIVSGED--------------------------RISKQAQYNATLLMNILLR 255
Query: 367 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
++L SK V H+L +AF W+L EIE RF QA+A GEMVGA AAQS+GEPATQMTLNT
Sbjct: 256 STLCSKQVAKVHKLNTEAFEWILGEIETRFNQAIAQPGEMVGALAAQSLGEPATQMTLNT 315
[111][TOP]
>UniRef100_A9QMG7 RNA polymerase 2 (Fragment) n=1 Tax=Distolabrellus veechi
RepID=A9QMG7_9BILA
Length = 583
Score = 138 bits (348), Expect = 2e-31
Identities = 77/181 (42%), Positives = 109/181 (60%)
Frame = +1
Query: 4 KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
+EW QL++DR LR ++F G+ K+ L N++RLIWNA++IF V S L+P +++ G
Sbjct: 146 EEWQQLEEDRRLLR-KIFPKGDNKVVLPCNLQRLIWNAQKIFKVETRKPSSLNPLRVIEG 204
Query: 184 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
V + + ++ D+ +S+ AQ NATLL + V
Sbjct: 205 VREMSKKLIIVCGDD---------------------------RISKHAQYNATLLMNILV 237
Query: 364 RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
R++L SK + ++RL +AF WLL EIE+RFQQA+ GEMVGA AAQS+GEPATQMTLN
Sbjct: 238 RSTLCSKQMADKYRLNEEAFEWLLGEIEHRFQQAIVQPGEMVGALAAQSLGEPATQMTLN 297
Query: 544 T 546
T
Sbjct: 298 T 298
[112][TOP]
>UniRef100_A6NN93 DNA-directed RNA polymerase n=1 Tax=Homo sapiens RepID=A6NN93_HUMAN
Length = 1970
Score = 138 bits (348), Expect = 2e-31
Identities = 78/181 (43%), Positives = 112/181 (61%)
Frame = +1
Query: 4 KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
+E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++IF + SDL P K+V G
Sbjct: 954 REFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEG 1012
Query: 184 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
V+ L + ++ D+ LS AQ NATLLF +H+
Sbjct: 1013 VKELSKKLVIVNGDDP---------------------------LSRQAQENATLLFNIHL 1045
Query: 364 RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
R++L S+ + E RL+ +AF WLL EIE++F QA+A GEMVGA AAQS+GEPATQMTLN
Sbjct: 1046 RSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMTLN 1105
Query: 544 T 546
T
Sbjct: 1106 T 1106
[113][TOP]
>UniRef100_P08775 DNA-directed RNA polymerase II subunit RPB1 n=1 Tax=Mus musculus
RepID=RPB1_MOUSE
Length = 1970
Score = 138 bits (348), Expect = 2e-31
Identities = 78/181 (43%), Positives = 112/181 (61%)
Frame = +1
Query: 4 KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
+E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++IF + SDL P K+V G
Sbjct: 954 REFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEG 1012
Query: 184 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
V+ L + ++ D+ LS AQ NATLLF +H+
Sbjct: 1013 VKELSKKLVIVNGDDP---------------------------LSRQAQENATLLFNIHL 1045
Query: 364 RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
R++L S+ + E RL+ +AF WLL EIE++F QA+A GEMVGA AAQS+GEPATQMTLN
Sbjct: 1046 RSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMTLN 1105
Query: 544 T 546
T
Sbjct: 1106 T 1106
[114][TOP]
>UniRef100_P24928 DNA-directed RNA polymerase II subunit RPB1 n=2 Tax=Euarchontoglires
RepID=RPB1_HUMAN
Length = 1970
Score = 138 bits (348), Expect = 2e-31
Identities = 78/181 (43%), Positives = 112/181 (61%)
Frame = +1
Query: 4 KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
+E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++IF + SDL P K+V G
Sbjct: 954 REFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEG 1012
Query: 184 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
V+ L + ++ D+ LS AQ NATLLF +H+
Sbjct: 1013 VKELSKKLVIVNGDDP---------------------------LSRQAQENATLLFNIHL 1045
Query: 364 RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
R++L S+ + E RL+ +AF WLL EIE++F QA+A GEMVGA AAQS+GEPATQMTLN
Sbjct: 1046 RSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMTLN 1105
Query: 544 T 546
T
Sbjct: 1106 T 1106
[115][TOP]
>UniRef100_UPI00016E658E UPI00016E658E related cluster n=1 Tax=Takifugu rubripes
RepID=UPI00016E658E
Length = 1628
Score = 138 bits (347), Expect = 3e-31
Identities = 76/181 (41%), Positives = 110/181 (60%)
Frame = +1
Query: 4 KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
+E+ ++K+DR+ LR +F TG++K+ L N+ R+IWNA++IF + +DLSP ++V G
Sbjct: 952 REFEKMKEDREILR-AIFPTGDSKVVLPCNLARMIWNAQKIFRINTRTPTDLSPLRVVEG 1010
Query: 184 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
L + ++ D+ LS+ AQ NATLLF +H+
Sbjct: 1011 THDLSKKLVIVNGDDP---------------------------LSKQAQQNATLLFNIHL 1043
Query: 364 RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
R++L SK + E RL+ +AF WLL EIE +F ++A GEMVGA AAQS+GEPATQMTLN
Sbjct: 1044 RSTLCSKRMTEEFRLSTEAFDWLLGEIETKFNHSIAHPGEMVGALAAQSLGEPATQMTLN 1103
Query: 544 T 546
T
Sbjct: 1104 T 1104
[116][TOP]
>UniRef100_A9TK89 DNA-directed RNA polymerase n=1 Tax=Physcomitrella patens subsp.
patens RepID=A9TK89_PHYPA
Length = 1646
Score = 138 bits (347), Expect = 3e-31
Identities = 81/180 (45%), Positives = 107/180 (59%)
Frame = +1
Query: 7 EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
E ++L+ DR + E+ TGEA PL VN++RLIWNA++IF V SD+ P +IV V
Sbjct: 938 EVSKLEADRRQMGLEIAPTGEANWPLPVNLKRLIWNAQKIFKVDFRKPSDMHPMEIVEAV 997
Query: 187 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
+ L R RV+ D+ ++S AQ NATL F +R
Sbjct: 998 DKLQERLRVVPGDD---------------------------QISMEAQRNATLFFGCLLR 1030
Query: 367 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
++LASK VL ++RLTR+AF W++ EIE RF +L GEM+G AAQSIGEPATQMTLNT
Sbjct: 1031 STLASKRVLKDYRLTREAFDWVIGEIETRFLMSLVAPGEMIGCVAAQSIGEPATQMTLNT 1090
[117][TOP]
>UniRef100_A8PU11 DNA-directed RNA polymerase n=1 Tax=Brugia malayi RepID=A8PU11_BRUMA
Length = 1943
Score = 138 bits (347), Expect = 3e-31
Identities = 77/180 (42%), Positives = 111/180 (61%)
Frame = +1
Query: 7 EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
EW QL++DR LR ++F G+AK+ L N++R+IWNA++IF V +DL+P +++ GV
Sbjct: 1020 EWGQLEEDRRLLR-KIFPKGDAKIVLPCNLQRMIWNAQKIFRVELRKPTDLNPLRVIEGV 1078
Query: 187 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
+ L + V+ S ED +S+ AQ NATLL + +R
Sbjct: 1079 KELSKKL-VIVSGED--------------------------RISKQAQYNATLLMNILLR 1111
Query: 367 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
++L +K + +HRL + F WL+ EIE+RF+QA+ GEMVGA AAQS+GEPATQMTLNT
Sbjct: 1112 STLCAKRMAEKHRLNSEGFEWLIGEIESRFKQAIVQPGEMVGAIAAQSLGEPATQMTLNT 1171
[118][TOP]
>UniRef100_Q6E226 DNA-directed RNA polymerase (Fragment) n=1 Tax=Caenorhabditis
plicata RepID=Q6E226_9PELO
Length = 636
Score = 137 bits (345), Expect = 5e-31
Identities = 77/180 (42%), Positives = 109/180 (60%)
Frame = +1
Query: 7 EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
EWAQL++DR LR ++F G+AK+ L N++RLIWNA++IF V DLSP ++ GV
Sbjct: 164 EWAQLEEDRRLLR-KIFPKGDAKIVLPCNLQRLIWNAQKIFKVDTRKPVDLSPLHVIDGV 222
Query: 187 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
+ + +++ ++D +S AQ NATLL + +R
Sbjct: 223 REISSKLIIVSGNDD---------------------------ISRQAQYNATLLMNILLR 255
Query: 367 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
++L SK + + +L +AF WLL E+E+RF QA+A GEMVGA AAQS+GEPATQMTLNT
Sbjct: 256 STLCSKKLCTTSKLNTEAFDWLLGEVESRFNQAIAQPGEMVGALAAQSLGEPATQMTLNT 315
[119][TOP]
>UniRef100_A9QMG0 DNA-directed RNA polymerase (Fragment) n=1 Tax=Oscheius tipulae
RepID=A9QMG0_OSCTI
Length = 629
Score = 137 bits (345), Expect = 5e-31
Identities = 78/180 (43%), Positives = 109/180 (60%)
Frame = +1
Query: 7 EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
EWAQL++DR LR + F G+ K+ L N++RLIWNA++IF V + + L+P ++RGV
Sbjct: 164 EWAQLEEDRRLLR-KTFPNGDNKVVLPCNLQRLIWNAQKIFHVETREVTSLNPLAVIRGV 222
Query: 187 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
+ L + ++ ED +S AQ NATLL + +R
Sbjct: 223 KNLSDKL-IIVGGED--------------------------RISRQAQFNATLLMNILLR 255
Query: 367 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
++L SK + + H+L ++AF WLL EIE RF+ A+A GEMVGA AAQS+GEPATQMTLNT
Sbjct: 256 STLCSKKMATTHKLNQEAFDWLLGEIETRFKSAIAQPGEMVGALAAQSLGEPATQMTLNT 315
[120][TOP]
>UniRef100_A9QME7 DNA-directed RNA polymerase (Fragment) n=1 Tax=Pellioditis
mediterranea RepID=A9QME7_9PELO
Length = 618
Score = 137 bits (345), Expect = 5e-31
Identities = 75/181 (41%), Positives = 109/181 (60%)
Frame = +1
Query: 4 KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
+EW QL+ DR LR ++F TG+AK+ L N++RLIWNA++IF V +DLSP +++ G
Sbjct: 160 EEWHQLEHDRRLLR-KIFPTGDAKIVLPCNLQRLIWNAQKIFHVETRKPTDLSPLRVIEG 218
Query: 184 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
V + + ++ ++ +S+ AQ NATLL + +
Sbjct: 219 VRDMSEKLIIVAGED---------------------------RISKQAQYNATLLMNILL 251
Query: 364 RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
R++L SK + ++L +AF WLL E+E RF+QA+A GEMVG AAQS+GEPATQMTLN
Sbjct: 252 RSTLCSKKMAVSYKLNSEAFEWLLGEVETRFKQAIAQPGEMVGPLAAQSLGEPATQMTLN 311
Query: 544 T 546
T
Sbjct: 312 T 312
[121][TOP]
>UniRef100_UPI00005A0B1A PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
(RPB1) isoform 6 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B1A
Length = 1767
Score = 137 bits (344), Expect = 7e-31
Identities = 78/183 (42%), Positives = 114/183 (62%), Gaps = 2/183 (1%)
Frame = +1
Query: 4 KEWAQLKKDRDFLRHEVFKTGEAKLPLAV--NIERLIWNAKRIFDVRQNDRSDLSPSKIV 177
+E+ ++++DR+ LR +F TG++K+P+ + N+ R+IWNA++IF + SDL P K+V
Sbjct: 940 REFERMREDREVLR-VIFPTGDSKVPVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVV 998
Query: 178 RGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQV 357
GV+ L + ++ D+ LS AQ NATLLF +
Sbjct: 999 EGVKELSKKLVIVNGDDP---------------------------LSRQAQENATLLFNI 1031
Query: 358 HVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMT 537
H+R++L S+ + E RL+ +AF WLL EIE++F QA+A GEMVGA AAQS+GEPATQMT
Sbjct: 1032 HLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMT 1091
Query: 538 LNT 546
LNT
Sbjct: 1092 LNT 1094
[122][TOP]
>UniRef100_B4YT40 DNA-directed RNA polymerase (Fragment) n=1 Tax=Dineutes sublineatus
RepID=B4YT40_9COLE
Length = 562
Score = 137 bits (344), Expect = 7e-31
Identities = 76/175 (43%), Positives = 107/175 (61%)
Frame = +1
Query: 4 KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
+EW QL KDR+ LR ++F +GE+K+ L N++R+IWN ++IF + + ++DLSP ++++G
Sbjct: 416 REWEQLVKDRETLR-QIFPSGESKVVLPCNLQRMIWNVQKIFHINKRAQTDLSPLRVIQG 474
Query: 184 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
V LL + ++ D+ LS+ A NATLLFQ V
Sbjct: 475 VRDLLQKCVIVAGDD---------------------------RLSKQANENATLLFQCLV 507
Query: 364 RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPAT 528
RA+L +K V E RL+ +AF WL+ EIE RFQQA GEMVGA AAQS+GEPAT
Sbjct: 508 RATLCTKCVSEEFRLSTEAFEWLIGEIETRFQQAQCAPGEMVGALAAQSLGEPAT 562
[123][TOP]
>UniRef100_B4YT36 DNA-directed RNA polymerase (Fragment) n=1 Tax=Chauliognathus
opacus RepID=B4YT36_9COLE
Length = 629
Score = 137 bits (344), Expect = 7e-31
Identities = 76/175 (43%), Positives = 108/175 (61%)
Frame = +1
Query: 4 KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
+EW QL+KDR+ LR ++F +GE+K+ L N++R+IWN ++IF + + +DLSP ++++G
Sbjct: 483 REWEQLQKDREALR-QIFPSGESKVVLPCNLQRMIWNVQKIFHINKRAPTDLSPLRVIQG 541
Query: 184 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
V LL + ++ D+ LS+ A NATLLFQ V
Sbjct: 542 VRELLKKCIIVAGDD---------------------------RLSKQANENATLLFQCLV 574
Query: 364 RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPAT 528
R++L +K V E RL+ +AF WL+ EIE RFQQA A GEMVGA AAQS+GEPAT
Sbjct: 575 RSTLCTKCVSEEFRLSTEAFEWLIGEIETRFQQAQANPGEMVGALAAQSLGEPAT 629
[124][TOP]
>UniRef100_UPI0000F2BF13 PREDICTED: similar to RNA polymerase II isoform 2 n=1 Tax=Monodelphis
domestica RepID=UPI0000F2BF13
Length = 1932
Score = 136 bits (343), Expect = 9e-31
Identities = 80/181 (44%), Positives = 113/181 (62%)
Frame = +1
Query: 4 KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
+E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++IF + SDL P K+V G
Sbjct: 954 REFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVDG 1012
Query: 184 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
V+ L + V+ + ED LS AQ NATLLF +H+
Sbjct: 1013 VKELSKKL-VIVNGEDP--------------------------LSRQAQENATLLFNIHL 1045
Query: 364 RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
R++L S+ + E RL+ +AF WLL EIE++F QA+A GEMVGA AAQS+GEPATQMTLN
Sbjct: 1046 RSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMTLN 1105
Query: 544 T 546
T
Sbjct: 1106 T 1106
[125][TOP]
>UniRef100_UPI0000F2BF12 PREDICTED: similar to RNA polymerase II isoform 1 n=1 Tax=Monodelphis
domestica RepID=UPI0000F2BF12
Length = 1970
Score = 136 bits (343), Expect = 9e-31
Identities = 80/181 (44%), Positives = 113/181 (62%)
Frame = +1
Query: 4 KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
+E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++IF + SDL P K+V G
Sbjct: 954 REFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVDG 1012
Query: 184 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
V+ L + V+ + ED LS AQ NATLLF +H+
Sbjct: 1013 VKELSKKL-VIVNGEDP--------------------------LSRQAQENATLLFNIHL 1045
Query: 364 RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
R++L S+ + E RL+ +AF WLL EIE++F QA+A GEMVGA AAQS+GEPATQMTLN
Sbjct: 1046 RSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMTLN 1105
Query: 544 T 546
T
Sbjct: 1106 T 1106
[126][TOP]
>UniRef100_A9QMF1 RNA polymerase 2 (Fragment) n=1 Tax=Pelodera punctata
RepID=A9QMF1_9PELO
Length = 605
Score = 136 bits (343), Expect = 9e-31
Identities = 77/180 (42%), Positives = 107/180 (59%)
Frame = +1
Query: 7 EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
EW QL++DR LR ++F G+ K+ L N++RLIWNA++IF V S L+P K+V GV
Sbjct: 141 EWQQLEEDRRLLR-KIFPKGDHKVVLPCNLQRLIWNAQKIFKVETRKASSLNPLKVVSGV 199
Query: 187 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
L + ++ ++ +S+ AQ NATLL + +R
Sbjct: 200 RELSKKLIIVCGED---------------------------RISKQAQYNATLLMNILIR 232
Query: 367 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
++L SK + ++RL + F WLL EIE+RF QA+A GEMVGA AAQS+GEPATQMTLNT
Sbjct: 233 STLCSKQMAEKYRLNEEGFEWLLGEIEHRFNQAVAQPGEMVGALAAQSLGEPATQMTLNT 292
[127][TOP]
>UniRef100_P16356 DNA-directed RNA polymerase II subunit RPB1 n=1 Tax=Caenorhabditis
elegans RepID=RPB1_CAEEL
Length = 1852
Score = 136 bits (343), Expect = 9e-31
Identities = 77/180 (42%), Positives = 112/180 (62%)
Frame = +1
Query: 7 EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
EW+QL++DR LR ++F G+AK+ L N++RLIWNA++IF V +LSP ++ GV
Sbjct: 945 EWSQLEEDRRLLR-KIFPRGDAKIVLPCNLQRLIWNAQKIFKVDLRKPVNLSPLHVISGV 1003
Query: 187 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
L + +++ ++ E+S+ AQ NATLL + +R
Sbjct: 1004 RELSKKLIIVSGND---------------------------EISKQAQYNATLLMNILLR 1036
Query: 367 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
++L +K + ++ +L +AF WLL EIE+RFQQA+A GEMVGA AAQS+GEPATQMTLNT
Sbjct: 1037 STLCTKNMCTKSKLNSEAFDWLLGEIESRFQQAIAQPGEMVGALAAQSLGEPATQMTLNT 1096
[128][TOP]
>UniRef100_A9U396 DNA-directed RNA polymerase n=1 Tax=Physcomitrella patens subsp.
patens RepID=A9U396_PHYPA
Length = 1742
Score = 136 bits (342), Expect = 1e-30
Identities = 79/180 (43%), Positives = 107/180 (59%)
Frame = +1
Query: 7 EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
E ++L+ DR + E+ TGE+ PL VN++RLIWNA++IF V SD+ P +IV V
Sbjct: 953 EVSKLEADRRQMGLEIAPTGESNWPLPVNLKRLIWNAQKIFKVDLRKSSDMHPMEIVEAV 1012
Query: 187 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
E L R RV+ ++ ++S AQ NATL F +R
Sbjct: 1013 ENLQERLRVVPGND---------------------------QISMEAQRNATLFFGCLLR 1045
Query: 367 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
++LASK VL ++RLTR+AF W++ E+E RF +L GEM+G AAQSIGEPATQMTLNT
Sbjct: 1046 STLASKRVLKDYRLTREAFEWVIGEVETRFLMSLVAPGEMIGCVAAQSIGEPATQMTLNT 1105
[129][TOP]
>UniRef100_Q6E233 RNA polymerase 2 (Fragment) n=1 Tax=Caenorhabditis remanei
RepID=Q6E233_CAERE
Length = 611
Score = 136 bits (342), Expect = 1e-30
Identities = 76/180 (42%), Positives = 111/180 (61%)
Frame = +1
Query: 7 EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
EW+QL++DR LR ++F G+AK+ L N++RLIWNA++IF V +LSP ++ GV
Sbjct: 147 EWSQLEEDRRLLR-KIFPRGDAKIVLPCNLQRLIWNAQKIFKVDLRKPVNLSPLHVINGV 205
Query: 187 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
L + +++ ++ E+S+ AQ NATLL + +R
Sbjct: 206 RELSKKLIIVSGND---------------------------EISKQAQYNATLLMNILLR 238
Query: 367 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
++L +K + + +L +AF WLL E+E+RFQQA+A GEMVGA AAQS+GEPATQMTLNT
Sbjct: 239 STLCTKKMCTSAKLNTEAFDWLLGEVESRFQQAIAQPGEMVGALAAQSLGEPATQMTLNT 298
[130][TOP]
>UniRef100_Q6E231 RNA polymerase 2 (Fragment) n=1 Tax=Caenorhabditis brenneri
RepID=Q6E231_CAEBE
Length = 596
Score = 136 bits (342), Expect = 1e-30
Identities = 77/180 (42%), Positives = 110/180 (61%)
Frame = +1
Query: 7 EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
EW+QL++DR LR ++F G+AK+ L N++RLIWNA++IF V +LSP ++ GV
Sbjct: 139 EWSQLEEDRRLLR-KIFPRGDAKIVLPCNLQRLIWNAQKIFKVDLRKPVNLSPLHVINGV 197
Query: 187 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
L + +++ ++ E+S+ AQ NATLL + +R
Sbjct: 198 RELSKKLIIVSGND---------------------------EISKQAQYNATLLMNILLR 230
Query: 367 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
++L +K + + +L +AF WLL EIE RFQQA+A GEMVGA AAQS+GEPATQMTLNT
Sbjct: 231 STLCTKKMCTSAKLNTEAFDWLLGEIETRFQQAIAQPGEMVGALAAQSLGEPATQMTLNT 290
[131][TOP]
>UniRef100_P35074 DNA-directed RNA polymerase II subunit RPB1 n=1 Tax=Caenorhabditis
briggsae RepID=RPB1_CAEBR
Length = 1853
Score = 136 bits (342), Expect = 1e-30
Identities = 77/180 (42%), Positives = 110/180 (61%)
Frame = +1
Query: 7 EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
EW+QL++DR LR ++F G+AK+ L N++RLIWNA++IF V +LSP ++ GV
Sbjct: 949 EWSQLEEDRRLLR-KIFPRGDAKIVLPCNLQRLIWNAQKIFKVDLRKPVNLSPLHVINGV 1007
Query: 187 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
L + +++ ++ E+S+ AQ NATLL + +R
Sbjct: 1008 RELSKKLIIVSGND---------------------------EISKQAQYNATLLMNILLR 1040
Query: 367 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
++L +K + + +L +AF WLL EIE RFQQA+A GEMVGA AAQS+GEPATQMTLNT
Sbjct: 1041 STLCTKKMCTSAKLNTEAFDWLLGEIETRFQQAIAQPGEMVGALAAQSLGEPATQMTLNT 1100
[132][TOP]
>UniRef100_O35559 DNA-directed RNA polymerase n=1 Tax=Cricetulus griseus
RepID=O35559_CRIGR
Length = 1970
Score = 135 bits (340), Expect = 2e-30
Identities = 77/181 (42%), Positives = 111/181 (61%)
Frame = +1
Query: 4 KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
+E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++IF + SDL K+V G
Sbjct: 954 REFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHSIKVVEG 1012
Query: 184 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
V+ L + ++ D+ LS AQ NATLLF +H+
Sbjct: 1013 VKELSKKLVIVNGDDP---------------------------LSRQAQENATLLFNIHL 1045
Query: 364 RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
R++L S+ + E RL+ +AF WLL EIE++F QA+A GEMVGA AAQS+GEPATQMTLN
Sbjct: 1046 RSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMTLN 1105
Query: 544 T 546
T
Sbjct: 1106 T 1106
[133][TOP]
>UniRef100_C3ZES3 DNA-directed RNA polymerase n=1 Tax=Branchiostoma floridae
RepID=C3ZES3_BRAFL
Length = 1934
Score = 135 bits (340), Expect = 2e-30
Identities = 79/180 (43%), Positives = 106/180 (58%)
Frame = +1
Query: 7 EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
E+ QL+ DRD LR V +TG+AK+ L N+ R+IWNA++IF V +DL P K+V GV
Sbjct: 951 EFEQLRVDRDVLR-SVNQTGDAKVALPCNLARIIWNAQKIFHVNTRAPTDLHPIKVVEGV 1009
Query: 187 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
L + ++ D+ + A Q NAT+LF +R
Sbjct: 1010 RDLSRKLVIVKGDDPISIQA---------------------------QANATILFNTLLR 1042
Query: 367 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
++L ++ VL E RL+ +AF WLL EIE+RF QA+ GEMVGA AAQS+GEPATQMTLNT
Sbjct: 1043 STLCTRRVLEEFRLSTEAFDWLLGEIESRFNQAIVQPGEMVGALAAQSLGEPATQMTLNT 1102
[134][TOP]
>UniRef100_B4YT54 DNA-directed RNA polymerase (Fragment) n=2 Tax=Odontium subgenus
complex RepID=B4YT54_9CARA
Length = 473
Score = 135 bits (340), Expect = 2e-30
Identities = 77/175 (44%), Positives = 108/175 (61%)
Frame = +1
Query: 4 KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
+EW QL +DR+ LR ++F +GE+K+ L N++R+IWN ++IF + + +DLSP ++++G
Sbjct: 327 REWEQLSRDREALR-QIFPSGESKVVLPCNLQRMIWNVQKIFHINKRSPTDLSPIRVIQG 385
Query: 184 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
V LL + V+ + ED LS+ A NATLLFQ V
Sbjct: 386 VRDLLQKC-VIVAGED--------------------------RLSKQANENATLLFQCLV 418
Query: 364 RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPAT 528
RA+L +K V E RL+ +AF WL+ EIE RFQQA + GEMVGA AAQS+GEPAT
Sbjct: 419 RATLCTKCVSEEFRLSTEAFEWLIGEIETRFQQAQSAPGEMVGALAAQSLGEPAT 473
[135][TOP]
>UniRef100_B4YT49 DNA-directed RNA polymerase (Fragment) n=1 Tax=Bembidion
mandibulare RepID=B4YT49_9CARA
Length = 562
Score = 135 bits (340), Expect = 2e-30
Identities = 77/175 (44%), Positives = 108/175 (61%)
Frame = +1
Query: 4 KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
+EW QL +DR+ LR ++F +GE+K+ L N++R+IWN ++IF + + +DLSP ++++G
Sbjct: 416 REWEQLSRDREALR-QIFPSGESKVVLPCNLQRMIWNVQKIFHINKRSPTDLSPIRVIQG 474
Query: 184 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
V LL + V+ + ED LS+ A NATLLFQ V
Sbjct: 475 VRDLLQKC-VIVAGED--------------------------RLSKQANENATLLFQCLV 507
Query: 364 RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPAT 528
RA+L +K V E RL+ +AF WL+ EIE RFQQA + GEMVGA AAQS+GEPAT
Sbjct: 508 RATLCTKCVSEEFRLSTEAFEWLIGEIETRFQQAQSAPGEMVGALAAQSLGEPAT 562
[136][TOP]
>UniRef100_B4YT48 DNA-directed RNA polymerase (Fragment) n=2 Tax=Notaphus
RepID=B4YT48_9CARA
Length = 562
Score = 135 bits (340), Expect = 2e-30
Identities = 77/175 (44%), Positives = 108/175 (61%)
Frame = +1
Query: 4 KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
+EW QL +DR+ LR ++F +GE+K+ L N++R+IWN ++IF + + +DLSP ++++G
Sbjct: 416 REWEQLSRDREALR-QIFPSGESKVVLPCNLQRMIWNVQKIFHINKRSPTDLSPIRVIQG 474
Query: 184 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
V LL + V+ + ED LS+ A NATLLFQ V
Sbjct: 475 VRDLLQKC-VIVAGED--------------------------RLSKQANENATLLFQCLV 507
Query: 364 RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPAT 528
RA+L +K V E RL+ +AF WL+ EIE RFQQA + GEMVGA AAQS+GEPAT
Sbjct: 508 RATLCTKCVSEEFRLSTEAFEWLIGEIETRFQQAQSAPGEMVGALAAQSLGEPAT 562
[137][TOP]
>UniRef100_B4YT46 DNA-directed RNA polymerase (Fragment) n=3 Tax=Bembidion
RepID=B4YT46_9CARA
Length = 562
Score = 135 bits (340), Expect = 2e-30
Identities = 77/175 (44%), Positives = 108/175 (61%)
Frame = +1
Query: 4 KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
+EW QL +DR+ LR ++F +GE+K+ L N++R+IWN ++IF + + +DLSP ++++G
Sbjct: 416 REWEQLSRDREALR-QIFPSGESKVVLPCNLQRMIWNVQKIFHINKRSPTDLSPIRVIQG 474
Query: 184 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
V LL + V+ + ED LS+ A NATLLFQ V
Sbjct: 475 VRDLLQKC-VIVAGED--------------------------RLSKQANENATLLFQCLV 507
Query: 364 RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPAT 528
RA+L +K V E RL+ +AF WL+ EIE RFQQA + GEMVGA AAQS+GEPAT
Sbjct: 508 RATLCTKCVSEEFRLSTEAFEWLIGEIETRFQQAQSAPGEMVGALAAQSLGEPAT 562
[138][TOP]
>UniRef100_B4YT44 DNA-directed RNA polymerase (Fragment) n=1 Tax=Asaphidion yukonense
RepID=B4YT44_9CARA
Length = 562
Score = 135 bits (340), Expect = 2e-30
Identities = 77/175 (44%), Positives = 108/175 (61%)
Frame = +1
Query: 4 KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
+EW QL +DR+ LR ++F +GE+K+ L N++R+IWN ++IF + + +DLSP ++++G
Sbjct: 416 REWEQLSRDREALR-QIFPSGESKVVLPCNLQRMIWNVQKIFHINKRSPTDLSPIRVIQG 474
Query: 184 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
V LL + V+ + ED LS+ A NATLLFQ V
Sbjct: 475 VRDLLQKC-VIVAGED--------------------------RLSKLANENATLLFQCLV 507
Query: 364 RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPAT 528
RA+L +K V E RL+ +AF WL+ EIE RFQQA + GEMVGA AAQS+GEPAT
Sbjct: 508 RATLCTKCVSEEFRLSTEAFEWLIGEIETRFQQAQSAPGEMVGALAAQSLGEPAT 562
[139][TOP]
>UniRef100_B3FA71 RNA polymerase II largest subunit (Fragment) n=2 Tax=Pseudoperyphus
RepID=B3FA71_9CARA
Length = 227
Score = 135 bits (340), Expect = 2e-30
Identities = 77/175 (44%), Positives = 108/175 (61%)
Frame = +1
Query: 4 KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
+EW QL +DR+ LR ++F +GE+K+ L N++R+IWN ++IF + + +DLSP ++++G
Sbjct: 81 REWEQLSRDREALR-QIFPSGESKVVLPCNLQRMIWNVQKIFHINKRSPTDLSPIRVIQG 139
Query: 184 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
V LL + V+ + ED LS+ A NATLLFQ V
Sbjct: 140 VRDLLQKC-VIVAGED--------------------------RLSKQANENATLLFQCLV 172
Query: 364 RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPAT 528
RA+L +K V E RL+ +AF WL+ EIE RFQQA + GEMVGA AAQS+GEPAT
Sbjct: 173 RATLCTKCVSEEFRLSTEAFEWLIGEIETRFQQAQSAPGEMVGALAAQSLGEPAT 227
[140][TOP]
>UniRef100_B3FA50 RNA polymerase II largest subunit (Fragment) n=1 Tax=Bembidion
coxendix RepID=B3FA50_9CARA
Length = 225
Score = 135 bits (340), Expect = 2e-30
Identities = 77/175 (44%), Positives = 108/175 (61%)
Frame = +1
Query: 4 KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
+EW QL +DR+ LR ++F +GE+K+ L N++R+IWN ++IF + + +DLSP ++++G
Sbjct: 79 REWEQLSRDREALR-QIFPSGESKVVLPCNLQRMIWNVQKIFHINKRSPTDLSPIRVIQG 137
Query: 184 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
V LL + V+ + ED LS+ A NATLLFQ V
Sbjct: 138 VRDLLQKC-VIVAGED--------------------------RLSKQANENATLLFQCLV 170
Query: 364 RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPAT 528
RA+L +K V E RL+ +AF WL+ EIE RFQQA + GEMVGA AAQS+GEPAT
Sbjct: 171 RATLCTKCVSEEFRLSTEAFEWLIGEIETRFQQAQSAPGEMVGALAAQSLGEPAT 225
[141][TOP]
>UniRef100_B3FA43 RNA polymerase II largest subunit (Fragment) n=16 Tax=Bembidion
RepID=B3FA43_9CARA
Length = 227
Score = 135 bits (340), Expect = 2e-30
Identities = 77/175 (44%), Positives = 108/175 (61%)
Frame = +1
Query: 4 KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
+EW QL +DR+ LR ++F +GE+K+ L N++R+IWN ++IF + + +DLSP ++++G
Sbjct: 81 REWEQLSRDREALR-QIFPSGESKVVLPCNLQRMIWNVQKIFHINKRSPTDLSPIRVIQG 139
Query: 184 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
V LL + V+ + ED LS+ A NATLLFQ V
Sbjct: 140 VRDLLQKC-VIVAGED--------------------------RLSKQANENATLLFQCLV 172
Query: 364 RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPAT 528
RA+L +K V E RL+ +AF WL+ EIE RFQQA + GEMVGA AAQS+GEPAT
Sbjct: 173 RATLCTKCVSEEFRLSTEAFEWLIGEIETRFQQAQSAPGEMVGALAAQSLGEPAT 227
[142][TOP]
>UniRef100_A9QMF3 DNA-directed RNA polymerase (Fragment) n=1 Tax=Rhabditoides regina
RepID=A9QMF3_9BILA
Length = 626
Score = 135 bits (340), Expect = 2e-30
Identities = 74/180 (41%), Positives = 108/180 (60%)
Frame = +1
Query: 7 EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
EW QL++DR LR ++F G++K+ L N++RLIWNA++IF V + L+P +++ GV
Sbjct: 160 EWLQLEEDRRLLR-KIFPKGDSKVVLPCNLQRLIWNAQKIFKVETRKVTALNPLRVIEGV 218
Query: 187 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
+ + +++ D+ +S+ AQ NATLL + +R
Sbjct: 219 RNVSKKLVIVSGDD---------------------------RISKQAQYNATLLMNILIR 251
Query: 367 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
++L SK + +H+L + F WLL EIE RFQ A+A GEMVGA AAQS+GEPATQMTLNT
Sbjct: 252 STLCSKQMAEKHKLNEEGFEWLLGEIETRFQLAIAQPGEMVGALAAQSLGEPATQMTLNT 311
[143][TOP]
>UniRef100_UPI000186501C hypothetical protein BRAFLDRAFT_115025 n=1 Tax=Branchiostoma floridae
RepID=UPI000186501C
Length = 1956
Score = 135 bits (339), Expect = 3e-30
Identities = 79/180 (43%), Positives = 106/180 (58%)
Frame = +1
Query: 7 EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
E+ QL+ DRD LR V +TG+AK+ L N+ R+IWNA++IF V +DL P K+V GV
Sbjct: 951 EFEQLRVDRDVLR-SVNQTGDAKVALPCNLARIIWNAQKIFHVNTRAPTDLHPIKVVEGV 1009
Query: 187 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
L + ++ D+ + A Q NAT+LF +R
Sbjct: 1010 RDLSKKLVIVKGDDPISIQA---------------------------QANATILFNTLLR 1042
Query: 367 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
++L ++ VL E RL+ +AF WLL EIE+RF QA+ GEMVGA AAQS+GEPATQMTLNT
Sbjct: 1043 STLCTRRVLEEFRLSTEAFDWLLGEIESRFNQAIVQPGEMVGALAAQSLGEPATQMTLNT 1102
[144][TOP]
>UniRef100_UPI0000E48673 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
(RPB1) isoform 1 n=1 Tax=Strongylocentrotus purpuratus
RepID=UPI0000E48673
Length = 1880
Score = 135 bits (339), Expect = 3e-30
Identities = 81/181 (44%), Positives = 110/181 (60%)
Frame = +1
Query: 4 KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
KE+ QLK+DR+ LR ++F GE+K+ L N++R+IWNA++IF + S+L PS ++ G
Sbjct: 948 KEYDQLKEDREVLR-KIFPKGESKVALPCNLDRMIWNAQQIFHINTRLPSELHPSFVLEG 1006
Query: 184 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
V L + V+ EDA +S AQ NAT L +
Sbjct: 1007 VRDLKKKL-VIVKGEDA--------------------------ISRQAQENATYLMNCLI 1039
Query: 364 RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
R++L+S V EH+L+ ++F WLL EIE RF Q+LA AGEMVGA AAQS+GEPATQMTLN
Sbjct: 1040 RSTLSSTRVAQEHKLSPESFEWLLGEIETRFNQSLAMAGEMVGALAAQSLGEPATQMTLN 1099
Query: 544 T 546
T
Sbjct: 1100 T 1100
[145][TOP]
>UniRef100_UPI0000E48672 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
(RPB1) isoform 2 n=1 Tax=Strongylocentrotus purpuratus
RepID=UPI0000E48672
Length = 1913
Score = 135 bits (339), Expect = 3e-30
Identities = 81/181 (44%), Positives = 110/181 (60%)
Frame = +1
Query: 4 KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
KE+ QLK+DR+ LR ++F GE+K+ L N++R+IWNA++IF + S+L PS ++ G
Sbjct: 954 KEYDQLKEDREVLR-KIFPKGESKVALPCNLDRMIWNAQQIFHINTRLPSELHPSFVLEG 1012
Query: 184 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
V L + V+ EDA +S AQ NAT L +
Sbjct: 1013 VRDLKKKL-VIVKGEDA--------------------------ISRQAQENATYLMNCLI 1045
Query: 364 RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
R++L+S V EH+L+ ++F WLL EIE RF Q+LA AGEMVGA AAQS+GEPATQMTLN
Sbjct: 1046 RSTLSSTRVAQEHKLSPESFEWLLGEIETRFNQSLAMAGEMVGALAAQSLGEPATQMTLN 1105
Query: 544 T 546
T
Sbjct: 1106 T 1106
[146][TOP]
>UniRef100_UPI0000E48671 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
(RPB1) isoform 3 n=1 Tax=Strongylocentrotus purpuratus
RepID=UPI0000E48671
Length = 1921
Score = 135 bits (339), Expect = 3e-30
Identities = 81/181 (44%), Positives = 110/181 (60%)
Frame = +1
Query: 4 KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
KE+ QLK+DR+ LR ++F GE+K+ L N++R+IWNA++IF + S+L PS ++ G
Sbjct: 954 KEYDQLKEDREVLR-KIFPKGESKVALPCNLDRMIWNAQQIFHINTRLPSELHPSFVLEG 1012
Query: 184 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
V L + V+ EDA +S AQ NAT L +
Sbjct: 1013 VRDLKKKL-VIVKGEDA--------------------------ISRQAQENATYLMNCLI 1045
Query: 364 RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
R++L+S V EH+L+ ++F WLL EIE RF Q+LA AGEMVGA AAQS+GEPATQMTLN
Sbjct: 1046 RSTLSSTRVAQEHKLSPESFEWLLGEIETRFNQSLAMAGEMVGALAAQSLGEPATQMTLN 1105
Query: 544 T 546
T
Sbjct: 1106 T 1106
[147][TOP]
>UniRef100_B9SXC0 DNA-directed RNA polymerase n=1 Tax=Ricinus communis
RepID=B9SXC0_RICCO
Length = 1855
Score = 135 bits (339), Expect = 3e-30
Identities = 78/180 (43%), Positives = 106/180 (58%)
Frame = +1
Query: 7 EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
E +L+ DR L E+ TG++ PL VN+ RLIWNA++ F V + SD+ P + V V
Sbjct: 950 EVQKLEADRYQLGTEIATTGDSSWPLPVNLRRLIWNAQKTFKVDKRRPSDIHPMEAVEAV 1009
Query: 187 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
+ L R +V+ D+ V+A Q NATL F + +R
Sbjct: 1010 DKLQERLKVVPGDDPLSVEA---------------------------QKNATLFFGILLR 1042
Query: 367 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
++LASK VL ++RLTR+AF W++ EIE+RF Q+L GEM+G AAQSIGEPATQMTLNT
Sbjct: 1043 STLASKRVLEDYRLTREAFDWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNT 1102
[148][TOP]
>UniRef100_Q6E227 RNA polymerase 2 (Fragment) n=1 Tax=Caenorhabditis japonica
RepID=Q6E227_CAEJA
Length = 608
Score = 135 bits (339), Expect = 3e-30
Identities = 77/180 (42%), Positives = 109/180 (60%)
Frame = +1
Query: 7 EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
EW+QL++DR LR ++F G+AK+ L N++RLIWNA++IF V +LSP ++ GV
Sbjct: 147 EWSQLEEDRRLLR-KIFPRGDAKIVLPCNLQRLIWNAQKIFKVDLRKPVNLSPLHVINGV 205
Query: 187 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
L + ++ ++ E+S+ AQ NATLL + +R
Sbjct: 206 RELSKKLIIVCGND---------------------------EISKQAQYNATLLMNILLR 238
Query: 367 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
++L +K + + +L +AF WLL EIE RFQQA+A GEMVGA AAQS+GEPATQMTLNT
Sbjct: 239 STLCTKKMCTTAKLNTEAFDWLLGEIETRFQQAIAQPGEMVGALAAQSLGEPATQMTLNT 298
[149][TOP]
>UniRef100_Q6E225 DNA-directed RNA polymerase (Fragment) n=1 Tax=Caenorhabditis sp.
SB341 RepID=Q6E225_9PELO
Length = 622
Score = 135 bits (339), Expect = 3e-30
Identities = 75/180 (41%), Positives = 110/180 (61%)
Frame = +1
Query: 7 EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
EW QL++DR LR ++F TG+AK+ L N++RLIWNA++IF V ++LSP ++ GV
Sbjct: 164 EWNQLEEDRRLLR-KIFPTGDAKVVLPCNLQRLIWNAQKIFKVDLRKPTNLSPLHVIEGV 222
Query: 187 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
+ + +++ +D +S+ AQ NATLL + +R
Sbjct: 223 REVSKKLIIVSGSDD---------------------------ISKQAQYNATLLMNILLR 255
Query: 367 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
++L SK + + +L +AF WLL E+E+RF Q++A GEMVGA AAQS+GEPATQMTLNT
Sbjct: 256 STLCSKKMATSAKLNTEAFDWLLGEVESRFMQSIAQPGEMVGALAAQSLGEPATQMTLNT 315
[150][TOP]
>UniRef100_B4YT45 RNA polymerase II large subunit (Fragment) n=1 Tax=Sirdenus grayii
RepID=B4YT45_9CARA
Length = 227
Score = 135 bits (339), Expect = 3e-30
Identities = 77/175 (44%), Positives = 107/175 (61%)
Frame = +1
Query: 4 KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
+EW QL +DR+ LR ++F +GE+K+ L N++R+IWN ++IF + + +DLSP ++++G
Sbjct: 81 REWEQLSRDREALR-QIFPSGESKVVLPCNLQRMIWNVQKIFHINKRSPTDLSPIRVIQG 139
Query: 184 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
V LL + V+ + ED LS+ A NATLLFQ V
Sbjct: 140 VRDLLQKC-VIVAGED--------------------------RLSKQANENATLLFQCLV 172
Query: 364 RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPAT 528
RA+L +K V E RL+ +AF WL+ EIE RFQQA GEMVGA AAQS+GEPAT
Sbjct: 173 RATLCTKYVSEEFRLSTEAFEWLIGEIETRFQQAQCAPGEMVGALAAQSLGEPAT 227
[151][TOP]
>UniRef100_Q99368 DNA-directed RNA polymerase (Fragment) n=1 Tax=Glycine max
RepID=Q99368_SOYBN
Length = 977
Score = 134 bits (338), Expect = 3e-30
Identities = 80/180 (44%), Positives = 108/180 (60%)
Frame = +1
Query: 7 EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
E +L+ DR L E+ G+ LPL VN++RLIWNA++ F V SD+ P +IV +
Sbjct: 142 EVQKLEADRHQLAIEIASNGDNSLPLPVNLKRLIWNAQKTFKVDFRRPSDMHPMEIVEAI 201
Query: 187 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
+ L R +V+ EDA LS+ AQ NATLLF + +R
Sbjct: 202 DKLQERLKVVPG-EDA--------------------------LSQEAQKNATLLFNILLR 234
Query: 367 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
++ ASK VL E+RL+R++F W++ EIE+RF Q+L GEM+G AAQSIGEPATQMTLNT
Sbjct: 235 STFASKRVLEEYRLSRESFEWVVGEIESRFLQSLVVPGEMIGVVAAQSIGEPATQMTLNT 294
[152][TOP]
>UniRef100_A9QMF8 DNA-directed RNA polymerase (Fragment) n=1 Tax=Rhabditis sp. SB347
RepID=A9QMF8_9BILA
Length = 621
Score = 134 bits (338), Expect = 3e-30
Identities = 76/180 (42%), Positives = 108/180 (60%)
Frame = +1
Query: 7 EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
EW QL++DR LR ++F TG+AK+ L N++RLIWNA++IF V +DL+P +++ GV
Sbjct: 164 EWGQLEEDRRLLR-KIFPTGDAKIVLPCNLQRLIWNAQKIFHVETRKPTDLNPIRVIEGV 222
Query: 187 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
L + ++ S ED +S+ AQ NATLL + +R
Sbjct: 223 RELSSKL-IIVSGED--------------------------RISKQAQYNATLLMNILIR 255
Query: 367 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
++L SK + S ++L +AF WLL E+E RF+QA+A GA AAQS+GEPATQMTLNT
Sbjct: 256 STLCSKKMASTYKLNSEAFEWLLGEVETRFKQAIAXXXXXXGALAAQSLGEPATQMTLNT 315
[153][TOP]
>UniRef100_B4YT39 RNA polymerase II large subunit (Fragment) n=1 Tax=Pterostichus
melanarius RepID=B4YT39_PTEME
Length = 227
Score = 134 bits (337), Expect = 4e-30
Identities = 77/175 (44%), Positives = 107/175 (61%)
Frame = +1
Query: 4 KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
+EW QL +DR+ LR ++F +GE+K+ L N++R+IWN ++IF + + +DLSP ++++G
Sbjct: 81 REWEQLTRDREALR-QIFPSGESKVVLPCNLQRMIWNVQKIFHINKRSPTDLSPIRVIQG 139
Query: 184 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
V LL + V+ + ED LS+ A NATLLFQ V
Sbjct: 140 VRDLLKKC-VIVAGED--------------------------RLSKLANENATLLFQCLV 172
Query: 364 RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPAT 528
RA+L +K V E RL+ +AF WL+ EIE RFQQA GEMVGA AAQS+GEPAT
Sbjct: 173 RATLCTKCVSEEFRLSTEAFEWLIGEIETRFQQAQCAPGEMVGALAAQSLGEPAT 227
[154][TOP]
>UniRef100_B4YT37 DNA-directed RNA polymerase (Fragment) n=1 Tax=Scaphinotus petersi
RepID=B4YT37_9CARA
Length = 369
Score = 134 bits (337), Expect = 4e-30
Identities = 75/175 (42%), Positives = 105/175 (60%)
Frame = +1
Query: 4 KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
+EW QL +DR+ LR ++F +GE+K+ L N++R+IWN ++IF + + +DLSP ++++G
Sbjct: 223 REWEQLSRDREALR-QIFPSGESKVVLPCNLQRMIWNVQKIFHINKRAPTDLSPIRVIQG 281
Query: 184 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
V LL + ++ + LSE A NATLLFQ V
Sbjct: 282 VRDLLQKCVIVAGKD---------------------------RLSEQANENATLLFQCLV 314
Query: 364 RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPAT 528
RA+L +K V E RL+ +AF WL+ EIE RFQQA GEMVGA AAQS+GEPAT
Sbjct: 315 RATLCTKCVSEEFRLSSEAFEWLIGEIETRFQQAQCAPGEMVGALAAQSLGEPAT 369
[155][TOP]
>UniRef100_A9QMQ9 DNA-directed RNA polymerase (Fragment) n=1 Tax=Caenorhabditis sp.
JU727 RepID=A9QMQ9_9PELO
Length = 620
Score = 134 bits (337), Expect = 4e-30
Identities = 76/180 (42%), Positives = 109/180 (60%)
Frame = +1
Query: 7 EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
EW+QL++DR LR ++F G+AK+ L N++RLIWNA++IF V +LSP ++ GV
Sbjct: 164 EWSQLEEDRRLLR-KIFPRGDAKIVLPCNLQRLIWNAQKIFKVDLRKPVNLSPLHVINGV 222
Query: 187 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
L + +++ ++ E+S+ AQ NATLL + +R
Sbjct: 223 RELSKKLIIVSGND---------------------------EISKQAQYNATLLMNILLR 255
Query: 367 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
++L +K + + +L +AF WLL EIE RFQ A+A GEMVGA AAQS+GEPATQMTLNT
Sbjct: 256 STLCTKKMCTSAKLNTEAFDWLLGEIETRFQSAIAQPGEMVGALAAQSLGEPATQMTLNT 315
[156][TOP]
>UniRef100_UPI0000E12351 Os05g0151000 n=1 Tax=Oryza sativa Japonica Group RepID=UPI0000E12351
Length = 2085
Score = 134 bits (336), Expect = 6e-30
Identities = 75/180 (41%), Positives = 106/180 (58%)
Frame = +1
Query: 7 EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
E +L+ DR L E+ TG+ P+ VN++RLIWNA++ F + SD+ P +IV +
Sbjct: 951 EVQKLEADRFQLGTEIATTGDNTWPMPVNLKRLIWNAQKTFKIDLRRPSDMHPMEIVDAI 1010
Query: 187 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
+ L R +V+ D+D ++A Q NATL F + +R
Sbjct: 1011 DKLQERLKVVPGDDDISIEA---------------------------QKNATLFFNILLR 1043
Query: 367 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
++ ASK VL E+RLT++AF W++ EIE+RF Q+L GEM+G AAQSIGEPATQMTLNT
Sbjct: 1044 STFASKRVLKEYRLTKEAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNT 1103
[157][TOP]
>UniRef100_Q5WMZ9 DNA-directed RNA polymerase n=1 Tax=Oryza sativa Japonica Group
RepID=Q5WMZ9_ORYSJ
Length = 1741
Score = 134 bits (336), Expect = 6e-30
Identities = 75/180 (41%), Positives = 106/180 (58%)
Frame = +1
Query: 7 EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
E +L+ DR L E+ TG+ P+ VN++RLIWNA++ F + SD+ P +IV +
Sbjct: 898 EVQKLEADRFQLGTEIATTGDNTWPMPVNLKRLIWNAQKTFKIDLRRPSDMHPMEIVDAI 957
Query: 187 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
+ L R +V+ D+D ++A Q NATL F + +R
Sbjct: 958 DKLQERLKVVPGDDDISIEA---------------------------QKNATLFFNILLR 990
Query: 367 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
++ ASK VL E+RLT++AF W++ EIE+RF Q+L GEM+G AAQSIGEPATQMTLNT
Sbjct: 991 STFASKRVLKEYRLTKEAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNT 1050
[158][TOP]
>UniRef100_Q0DKN9 DNA-directed RNA polymerase n=1 Tax=Oryza sativa Japonica Group
RepID=Q0DKN9_ORYSJ
Length = 1834
Score = 134 bits (336), Expect = 6e-30
Identities = 75/180 (41%), Positives = 106/180 (58%)
Frame = +1
Query: 7 EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
E +L+ DR L E+ TG+ P+ VN++RLIWNA++ F + SD+ P +IV +
Sbjct: 951 EVQKLEADRFQLGTEIATTGDNTWPMPVNLKRLIWNAQKTFKIDLRRPSDMHPMEIVDAI 1010
Query: 187 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
+ L R +V+ D+D ++A Q NATL F + +R
Sbjct: 1011 DKLQERLKVVPGDDDISIEA---------------------------QKNATLFFNILLR 1043
Query: 367 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
++ ASK VL E+RLT++AF W++ EIE+RF Q+L GEM+G AAQSIGEPATQMTLNT
Sbjct: 1044 STFASKRVLKEYRLTKEAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNT 1103
[159][TOP]
>UniRef100_Q6E232 RNA polymersae 2 (Fragment) n=1 Tax=Caenorhabditis sp. PS1010
RepID=Q6E232_9PELO
Length = 601
Score = 134 bits (336), Expect = 6e-30
Identities = 76/180 (42%), Positives = 108/180 (60%)
Frame = +1
Query: 7 EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
EWAQL +DR LR ++F G+AK+ L N++RL+WNA++IF V +LSP ++ GV
Sbjct: 147 EWAQLSEDRRLLR-KIFPKGDAKIVLPCNLQRLMWNAQKIFKVDTRKPVNLSPLHVIDGV 205
Query: 187 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
L + ++ ++D +S+ AQ NATLL + +R
Sbjct: 206 RELSKKLIIVCGNDD---------------------------ISKQAQYNATLLMNILLR 238
Query: 367 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
++L +K + + +L +AF WLL EIE+RF QA+A GEMVGA AAQS+GEPATQMTLNT
Sbjct: 239 STLCTKKMCTSSKLNTEAFDWLLGEIESRFMQAIAQPGEMVGALAAQSLGEPATQMTLNT 298
[160][TOP]
>UniRef100_O01376 DNA-directed RNA polymerase (Fragment) n=1 Tax=unidentified
nematode RepID=O01376_9BILA
Length = 633
Score = 134 bits (336), Expect = 6e-30
Identities = 76/180 (42%), Positives = 108/180 (60%)
Frame = +1
Query: 7 EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
EWAQL +DR LR ++F G+AK+ L N++RL+WNA++IF V +LSP ++ GV
Sbjct: 160 EWAQLSEDRRLLR-KIFPKGDAKIVLPCNLQRLMWNAQKIFKVDTRKPVNLSPLHVIDGV 218
Query: 187 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
L + ++ ++D +S+ AQ NATLL + +R
Sbjct: 219 RELSKKLIIVCGNDD---------------------------ISKQAQYNATLLMNILLR 251
Query: 367 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
++L +K + + +L +AF WLL EIE+RF QA+A GEMVGA AAQS+GEPATQMTLNT
Sbjct: 252 SALCTKKMCTSSKLNTEAFDWLLGEIESRFMQAIAQPGEMVGALAAQSLGEPATQMTLNT 311
[161][TOP]
>UniRef100_A9QMG6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Teratorhabditis
palmarum RepID=A9QMG6_9BILA
Length = 633
Score = 134 bits (336), Expect = 6e-30
Identities = 77/181 (42%), Positives = 108/181 (59%)
Frame = +1
Query: 4 KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
+EW QL++DR LR ++F G+ K+ L N++RLIWNA++IF + +DLSP +++ G
Sbjct: 163 EEWQQLEEDRRLLR-KIFPKGDNKVVLPCNLQRLIWNAQKIFKIETRKVTDLSPVRVIEG 221
Query: 184 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
+ L + V+ S ED +S+ AQ NATLL + +
Sbjct: 222 IRELSKKL-VIVSGED--------------------------RISKQAQYNATLLMNILI 254
Query: 364 RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
R++L SK V S H+L +AF WLL EIE+RF+QA+A GA AAQS+GEPATQMTLN
Sbjct: 255 RSTLCSKRVASMHKLNNEAFDWLLGEIEHRFKQAIAXXXXXXGALAAQSLGEPATQMTLN 314
Query: 544 T 546
T
Sbjct: 315 T 315
[162][TOP]
>UniRef100_UPI0001985649 PREDICTED: similar to NRPB1 (RNA POLYMERASE II LARGE SUBUNIT); DNA
binding / DNA-directed RNA polymerase n=1 Tax=Vitis
vinifera RepID=UPI0001985649
Length = 1848
Score = 133 bits (335), Expect = 7e-30
Identities = 80/180 (44%), Positives = 106/180 (58%)
Frame = +1
Query: 7 EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
E +L+ DR L E+ TG+ P+ VN++RLIWNA++ F V SD+ P +IV V
Sbjct: 950 EVQKLEADRFQLGTEIATTGDNSWPMPVNLKRLIWNAQKTFKVDLRRPSDMHPMEIVEAV 1009
Query: 187 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
+ L R +V+ D D I+ E AQ NATL F + +R
Sbjct: 1010 DKLQERLKVVPGD-----DLISME----------------------AQKNATLFFNILLR 1042
Query: 367 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
++ ASK VL E+RLTR+AF W++ EIE+RF Q+L GEM+G AAQSIGEPATQMTLNT
Sbjct: 1043 STFASKRVLKEYRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNT 1102
[163][TOP]
>UniRef100_A7NVN7 DNA-directed RNA polymerase n=1 Tax=Vitis vinifera
RepID=A7NVN7_VITVI
Length = 1010
Score = 133 bits (335), Expect = 7e-30
Identities = 80/180 (44%), Positives = 106/180 (58%)
Frame = +1
Query: 7 EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
E +L+ DR L E+ TG+ P+ VN++RLIWNA++ F V SD+ P +IV V
Sbjct: 187 EVQKLEADRFQLGTEIATTGDNSWPMPVNLKRLIWNAQKTFKVDLRRPSDMHPMEIVEAV 246
Query: 187 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
+ L R +V+ D D I+ E AQ NATL F + +R
Sbjct: 247 DKLQERLKVVPGD-----DLISME----------------------AQKNATLFFNILLR 279
Query: 367 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
++ ASK VL E+RLTR+AF W++ EIE+RF Q+L GEM+G AAQSIGEPATQMTLNT
Sbjct: 280 STFASKRVLKEYRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNT 339
[164][TOP]
>UniRef100_B3FA52 RNA polymerase II largest subunit (Fragment) n=1 Tax=Bembidion
levettei RepID=B3FA52_9CARA
Length = 226
Score = 133 bits (335), Expect = 7e-30
Identities = 76/175 (43%), Positives = 107/175 (61%)
Frame = +1
Query: 4 KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
+EW QL +DR+ LR ++F +GE+K+ L N++R+IWN ++IF + + +DLSP ++++G
Sbjct: 80 REWEQLSRDREALR-QIFPSGESKVVLPCNLQRMIWNVQKIFHINKRSPTDLSPIRVIQG 138
Query: 184 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
V LL + V+ + ED LS+ NATLLFQ V
Sbjct: 139 VRDLLQKC-VIVAGED--------------------------RLSKQXNENATLLFQCLV 171
Query: 364 RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPAT 528
RA+L +K V E RL+ +AF WL+ EIE RFQQA + GEMVGA AAQS+GEPAT
Sbjct: 172 RATLCTKCVSEEFRLSTEAFEWLIGEIETRFQQAQSAPGEMVGALAAQSLGEPAT 226
[165][TOP]
>UniRef100_B3FA46 RNA polymerase II largest subunit (Fragment) n=1 Tax=Bembidion
bifossulatum RepID=B3FA46_9CARA
Length = 227
Score = 133 bits (335), Expect = 7e-30
Identities = 76/175 (43%), Positives = 107/175 (61%)
Frame = +1
Query: 4 KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
+EW QL +DR+ LR ++F +GE+K+ L N++R+IWN ++IF + + +DLSP ++++G
Sbjct: 81 REWEQLSRDREALR-QIFPSGESKVVLPCNLQRMIWNVQKIFHINKRSPTDLSPIRVIQG 139
Query: 184 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
V LL + V+ + ED LS+ NATLLFQ V
Sbjct: 140 VRDLLQKC-VIVAGED--------------------------RLSKQXNENATLLFQCLV 172
Query: 364 RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPAT 528
RA+L +K V E RL+ +AF WL+ EIE RFQQA + GEMVGA AAQS+GEPAT
Sbjct: 173 RATLCTKCVSEEFRLSTEAFEWLIGEIETRFQQAQSAPGEMVGALAAQSLGEPAT 227
[166][TOP]
>UniRef100_B3FA44 RNA polymerase II largest subunit (Fragment) n=3 Tax=Odontium
subgenus complex RepID=B3FA44_9CARA
Length = 227
Score = 133 bits (334), Expect = 1e-29
Identities = 76/175 (43%), Positives = 107/175 (61%)
Frame = +1
Query: 4 KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
+ W QL +DR+ LR ++F +GE+K+ L N++R+IWN ++IF + + +DLSP ++++G
Sbjct: 81 RXWEQLSRDREALR-QIFPSGESKVVLPCNLQRMIWNVQKIFHINKRSPTDLSPIRVIQG 139
Query: 184 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
V LL + V+ + ED LS+ A NATLLFQ V
Sbjct: 140 VRDLLQKC-VIVAGED--------------------------RLSKQANENATLLFQCLV 172
Query: 364 RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPAT 528
RA+L +K V E RL+ +AF WL+ EIE RFQQA + GEMVGA AAQS+GEPAT
Sbjct: 173 RATLCTKCVSEEFRLSTEAFEWLIGEIETRFQQAQSAPGEMVGALAAQSLGEPAT 227
[167][TOP]
>UniRef100_O04144 DNA-directed RNA polymerase (Fragment) n=1 Tax=Spirogyra sp.
RepID=O04144_9VIRI
Length = 613
Score = 132 bits (333), Expect = 1e-29
Identities = 78/180 (43%), Positives = 107/180 (59%)
Frame = +1
Query: 7 EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
E QL++DR L E+ TG++ PL VNI+RLIWNA++IF + SD++P +V G+
Sbjct: 460 EVLQLEQDRRTLGLEIAPTGDSSWPLPVNIKRLIWNAQKIFKIDLRKPSDMNPMDVVDGM 519
Query: 187 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
+ L R +V+ D D I+RE AQ NATL F +R
Sbjct: 520 DKLQERLKVVVGD-----DHISRE----------------------AQKNATLFFNCLLR 552
Query: 367 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
++++SK VL ++RL +AF W++ EIE RF Q+ GEM+G AAQSIGEPATQMTLNT
Sbjct: 553 STMSSKQVLKDYRLNMEAFQWVIGEIEARFLQSQVAPGEMIGCVAAQSIGEPATQMTLNT 612
[168][TOP]
>UniRef100_Q2N1B5 DNA-directed RNA polymerase II largest subunit (Fragment) n=1
Tax=Platynereis dumerilii RepID=Q2N1B5_PLADU
Length = 248
Score = 132 bits (333), Expect = 1e-29
Identities = 71/180 (39%), Positives = 104/180 (57%)
Frame = +1
Query: 7 EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
EW QL DR+ LR +F TG+AK+ L N+ RLIWNA++IF + +DL P K+V G+
Sbjct: 97 EWEQLMADRERLRG-IFPTGDAKIVLPCNLNRLIWNAQKIFRINIRKPTDLHPVKVVEGI 155
Query: 187 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
L + ++ ++ +DA +NAT+L + +R
Sbjct: 156 RELSKKFLIVKGEDKLSIDA---------------------------NINATMLMNILIR 188
Query: 367 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
+ L ++ ++ + RL+ +AF WLL E+E+RF QA+ GEMVG AAQS+GEPATQMTLNT
Sbjct: 189 SRLCARTIIEDDRLSSEAFEWLLGEVESRFNQAMVTPGEMVGPLAAQSLGEPATQMTLNT 248
[169][TOP]
>UniRef100_B4YT43 DNA-directed RNA polymerase (Fragment) n=1 Tax=Laccophilus pictus
RepID=B4YT43_9DYTI
Length = 562
Score = 132 bits (333), Expect = 1e-29
Identities = 75/174 (43%), Positives = 105/174 (60%)
Frame = +1
Query: 7 EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
EW QL+KDR+ LR ++F +GE+ + L N++R+IWN ++IF + + +DLSP ++++GV
Sbjct: 417 EWDQLQKDREALR-QIFPSGESNVVLPCNLQRMIWNVQKIFHINKRAPTDLSPLRVIQGV 475
Query: 187 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
LL R ++ + LS A NATLLFQ VR
Sbjct: 476 RELLQRCIIVAGTD---------------------------RLSTLANDNATLLFQCLVR 508
Query: 367 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPAT 528
++L +K V E+RL+ +AF WL+ EIE RFQQA A GEMVGA AAQS+GEPAT
Sbjct: 509 STLCTKYVSEEYRLSTEAFEWLIGEIETRFQQAQANPGEMVGALAAQSLGEPAT 562
[170][TOP]
>UniRef100_B3FA45 RNA polymerase II largest subunit (Fragment) n=1 Tax=Bembidion
balli RepID=B3FA45_9CARA
Length = 220
Score = 132 bits (333), Expect = 1e-29
Identities = 76/175 (43%), Positives = 107/175 (61%)
Frame = +1
Query: 4 KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
+EW QL +DR+ LR ++F +GE+K+ L N++R+IWN ++IF + + +DLSP ++++G
Sbjct: 74 REWEQLSRDREALR-QIFPSGESKVVLPCNLQRMIWNVQKIFHINKRSPTDLSPIRVIQG 132
Query: 184 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
V LL + V+ + ED LS+ A NATLLFQ V
Sbjct: 133 VRDLLQKC-VIVAGED--------------------------RLSKQANENATLLFQCLV 165
Query: 364 RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPAT 528
RA+L +K V E RL+ +A WL+ EIE RFQQA + GEMVGA AAQS+GEPAT
Sbjct: 166 RATLCTKCVSEEFRLSTEAXEWLIGEIETRFQQAQSAPGEMVGALAAQSLGEPAT 220
[171][TOP]
>UniRef100_B3FA42 RNA polymerase II largest subunit (Fragment) n=1 Tax=Bembidion
californicum RepID=B3FA42_9CARA
Length = 227
Score = 132 bits (332), Expect = 2e-29
Identities = 75/175 (42%), Positives = 107/175 (61%)
Frame = +1
Query: 4 KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
+ W QL ++R+ LR ++F +GE+K+ L N++R+IWN ++IF + + +DLSP ++++G
Sbjct: 81 RXWEQLSRBREALR-QIFPSGESKVVLPCNLQRMIWNVQKIFHINKRSPTDLSPIRVIQG 139
Query: 184 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
V LL + V+ + ED LS+ A NATLLFQ V
Sbjct: 140 VRDLLQKC-VIVAGED--------------------------RLSKQANENATLLFQCLV 172
Query: 364 RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPAT 528
RA+L +K V E RL+ +AF WL+ EIE RFQQA + GEMVGA AAQS+GEPAT
Sbjct: 173 RATLCTKCVSEEFRLSTEAFEWLIGEIETRFQQAQSAPGEMVGALAAQSLGEPAT 227
[172][TOP]
>UniRef100_C5YGY9 DNA-directed RNA polymerase n=1 Tax=Sorghum bicolor
RepID=C5YGY9_SORBI
Length = 1857
Score = 132 bits (331), Expect = 2e-29
Identities = 75/180 (41%), Positives = 105/180 (58%)
Frame = +1
Query: 7 EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
E +L+ DR L E+ TG+ P+ VN++RLIWNA++ F + SD+ P +IV V
Sbjct: 949 EVQKLEADRYQLGTEIATTGDNSWPMPVNLKRLIWNAQKTFRIDFRRPSDMHPMEIVEAV 1008
Query: 187 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
+ L R +V+ D+ ++A Q NATL F + +R
Sbjct: 1009 DKLQERLKVVPGDDPMSIEA---------------------------QKNATLFFNILLR 1041
Query: 367 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
++ ASK VL E+RLT++AF W++ EIE+RF Q+L GEM+G AAQSIGEPATQMTLNT
Sbjct: 1042 STFASKRVLKEYRLTKEAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNT 1101
[173][TOP]
>UniRef100_B9FZ51 DNA-directed RNA polymerase n=1 Tax=Oryza sativa Japonica Group
RepID=B9FZ51_ORYSJ
Length = 1526
Score = 132 bits (331), Expect = 2e-29
Identities = 74/180 (41%), Positives = 105/180 (58%)
Frame = +1
Query: 7 EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
E +L+ DR L E+ TG+ P+ VN++RLIWNA++ F + SD+ P +IV +
Sbjct: 621 EVQKLEADRFQLGSEIATTGDNTWPMPVNLKRLIWNAQKTFKIDLRRPSDMHPMEIVEAI 680
Query: 187 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
+ L R +V+ D+ ++A Q NATL F + +R
Sbjct: 681 DKLQERLKVVPGDDAMSIEA---------------------------QKNATLFFNILLR 713
Query: 367 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
++ ASK VL E+RLT++AF W++ EIE+RF Q+L GEM+G AAQSIGEPATQMTLNT
Sbjct: 714 STFASKRVLKEYRLTKEAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNT 773
[174][TOP]
>UniRef100_B8BAW1 DNA-directed RNA polymerase n=1 Tax=Oryza sativa Indica Group
RepID=B8BAW1_ORYSI
Length = 1449
Score = 132 bits (331), Expect = 2e-29
Identities = 74/180 (41%), Positives = 105/180 (58%)
Frame = +1
Query: 7 EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
E +L+ DR L E+ TG+ P+ VN++RLIWNA++ F + SD+ P +IV +
Sbjct: 920 EVQKLEADRFQLGSEIATTGDNTWPMPVNLKRLIWNAQKTFKIDLRRPSDMHPMEIVEAI 979
Query: 187 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
+ L R +V+ D+ ++A Q NATL F + +R
Sbjct: 980 DKLQERLKVVPGDDAMSIEA---------------------------QKNATLFFNILLR 1012
Query: 367 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
++ ASK VL E+RLT++AF W++ EIE+RF Q+L GEM+G AAQSIGEPATQMTLNT
Sbjct: 1013 STFASKRVLKEYRLTKEAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNT 1072
[175][TOP]
>UniRef100_Q6E223 RNA polymerase 2 (Fragment) n=1 Tax=Caenorhabditis sp. DF5070
RepID=Q6E223_9PELO
Length = 606
Score = 132 bits (331), Expect = 2e-29
Identities = 74/180 (41%), Positives = 107/180 (59%)
Frame = +1
Query: 7 EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
EW QL++DR LR ++F G+AK+ L N++RL+WNA++IF V +LSP ++ GV
Sbjct: 147 EWTQLEEDRRLLR-KIFPKGDAKIVLPCNLQRLMWNAQKIFKVDMRKPVNLSPLHVIDGV 205
Query: 187 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
L + ++ +D +S+ AQ NATLL + +R
Sbjct: 206 RELSKKLVIVGGSDD---------------------------ISKQAQYNATLLMNILLR 238
Query: 367 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
++L +K + + +L +AF WLL E+E+RF QA+A GEMVGA AAQS+GEPATQMTLNT
Sbjct: 239 STLCTKKLCTSSKLNTEAFDWLLGEVESRFMQAIAQPGEMVGALAAQSLGEPATQMTLNT 298
[176][TOP]
>UniRef100_Q6JTX1 RNA polymerase II largest subunit (Fragment) n=1 Tax=Isohypsibius
elegans RepID=Q6JTX1_9BILA
Length = 304
Score = 131 bits (330), Expect = 3e-29
Identities = 72/181 (39%), Positives = 110/181 (60%)
Frame = +1
Query: 4 KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
+E+ Q+K+DR+ +R ++F TG++++ L N++R++WNA++IF ++ +DL P ++V G
Sbjct: 85 QEFEQMKRDREIIR-KIFPTGDSRVVLPCNLQRMVWNAQKIFHIKGRGTTDLHPVRVVEG 143
Query: 184 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
+ L+ + V+ ED LS AQ NAT+L +
Sbjct: 144 LNELMKKL-VIVKGED--------------------------RLSREAQENATILMNTML 176
Query: 364 RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
R++L SK + E+ L +AF WLL EIE+RF Q++ GEMVGA AAQS+GEPATQMTLN
Sbjct: 177 RSTLCSKRMAEEYHLNTEAFEWLLGEIESRFAQSMVQPGEMVGALAAQSLGEPATQMTLN 236
Query: 544 T 546
T
Sbjct: 237 T 237
[177][TOP]
>UniRef100_A8Q5I6 DNA-directed RNA polymerase n=1 Tax=Malassezia globosa CBS 7966
RepID=A8Q5I6_MALGO
Length = 1607
Score = 131 bits (329), Expect = 4e-29
Identities = 77/180 (42%), Positives = 106/180 (58%)
Frame = +1
Query: 7 EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
E+ QL+ DR LR EVF+T L +NI RL+ NA++IF + SDLSP +IV G+
Sbjct: 736 EFEQLEADRKTLRTEVFQTDRVDTYLPLNIARLVLNAQQIFHIDPRKPSDLSPFEIVDGL 795
Query: 187 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
+ +L+ V+ D+ ++S Q NATLLF++H+R
Sbjct: 796 KRVLNNLLVVRGDD---------------------------KISRVMQENATLLFKIHLR 828
Query: 367 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
+ L SK V+ H LTR+A+ W+L EIE +F +++A GEM G AAQSIGEPATQMTLNT
Sbjct: 829 SFLCSKQVIEVHHLTREAWEWVLGEIEGQFARSVAQPGEMCGTLAAQSIGEPATQMTLNT 888
[178][TOP]
>UniRef100_Q1L5Y7 DNA-directed RNA polymerase (Fragment) n=1 Tax=Antirrhinum majus
RepID=Q1L5Y7_ANTMA
Length = 780
Score = 130 bits (328), Expect = 5e-29
Identities = 80/180 (44%), Positives = 104/180 (57%)
Frame = +1
Query: 7 EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
E +L+ DR L + TG+ PL VNI RL+ NA++ F V SD+ P +IV V
Sbjct: 627 EVQKLEADRFQLGTGIATTGDNSWPLPVNIRRLVLNAQKTFKVDFRRPSDMHPMEIVEAV 686
Query: 187 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
+ L R +V+ D+ LS AQ NATL F + +R
Sbjct: 687 DKLQERLKVVVGDD---------------------------YLSMEAQKNATLFFNILLR 719
Query: 367 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
++LASK VL E+RLTR+AF W++ EIE+RF Q+L AGEM+G AAQSIGEPATQMTLNT
Sbjct: 720 SALASKRVLKEYRLTREAFEWVIGEIESRFLQSLVAAGEMIGCVAAQSIGEPATQMTLNT 779
[179][TOP]
>UniRef100_P18616 DNA-directed RNA polymerase II subunit RPB1 n=1 Tax=Arabidopsis
thaliana RepID=RPB1_ARATH
Length = 1840
Score = 130 bits (328), Expect = 5e-29
Identities = 77/180 (42%), Positives = 106/180 (58%)
Frame = +1
Query: 7 EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
E+++L+ DR L E+ G++ PL VNI+R IWNA++ F + SD+ P +IV V
Sbjct: 952 EYSKLETDRFQLGTEIATNGDSTWPLPVNIKRHIWNAQKTFKIDLRKISDMHPVEIVDAV 1011
Query: 187 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
+ L R V+ D+ LS AQ NATL F + +R
Sbjct: 1012 DKLQERLLVVPGDD---------------------------ALSVEAQKNATLFFNILLR 1044
Query: 367 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
++LASK VL E++L+R+AF W++ EIE+RF Q+L GEM+G AAQSIGEPATQMTLNT
Sbjct: 1045 STLASKRVLEEYKLSREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNT 1104
[180][TOP]
>UniRef100_Q6CBQ3 DNA-directed RNA polymerase n=1 Tax=Yarrowia lipolytica
RepID=Q6CBQ3_YARLI
Length = 1750
Score = 130 bits (327), Expect = 6e-29
Identities = 77/181 (42%), Positives = 105/181 (58%)
Frame = +1
Query: 4 KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
+E+ QL DR LR EVF G+ PL VNI R++ N++RIF+V ++ SDL+ +IV G
Sbjct: 934 EEYNQLLTDRRLLREEVFTNGDHNWPLPVNIRRVVQNSQRIFNVDKSKVSDLTIPEIVEG 993
Query: 184 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
V+ L R ++ D L++ AQ NAT+LFQ V
Sbjct: 994 VQSLCKRLTIVRGDSS---------------------------LAKEAQENATMLFQCLV 1026
Query: 364 RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
R+ +K V+ E+RL R AF W++ EIE +F +++ GEMVG AAQSIGEPATQMTLN
Sbjct: 1027 RSRFPTKRVIEEYRLNRAAFEWVMGEIETQFAKSVVHPGEMVGVIAAQSIGEPATQMTLN 1086
Query: 544 T 546
T
Sbjct: 1087 T 1087
[181][TOP]
>UniRef100_C5Y387 DNA-directed RNA polymerase n=1 Tax=Sorghum bicolor
RepID=C5Y387_SORBI
Length = 1874
Score = 130 bits (326), Expect = 8e-29
Identities = 78/177 (44%), Positives = 102/177 (57%)
Frame = +1
Query: 16 QLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELL 195
+L+ DR L E+ G PL VN++RLIWNA++ F + SD+ P +IV ++ L
Sbjct: 953 KLEADRFQLGTEIATNGSHTWPLPVNLKRLIWNAQKTFKIDIRTCSDMHPIEIVEAIDKL 1012
Query: 196 LHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVRASL 375
R +V+ D DAI+ E AQ NATL F +H+RA+
Sbjct: 1013 QERLKVVPGD-----DAISIE----------------------AQKNATLFFNIHLRATF 1045
Query: 376 ASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
ASK VL E+RLTR+AF W++ EI RF Q+L EM+G AAQSIGEPATQMTLNT
Sbjct: 1046 ASKRVLREYRLTREAFEWIIDEIVWRFSQSLVAPSEMIGCVAAQSIGEPATQMTLNT 1102
[182][TOP]
>UniRef100_Q6E224 DNA-directed RNA polymerase (Fragment) n=1 Tax=Caenorhabditis
drosophilae RepID=Q6E224_9PELO
Length = 633
Score = 129 bits (325), Expect = 1e-28
Identities = 73/180 (40%), Positives = 106/180 (58%)
Frame = +1
Query: 7 EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
EW QL++DR LR ++F G+AK+ L N++RL+WNA++IF V +LSP ++ GV
Sbjct: 163 EWTQLEEDRRLLR-KIFPKGDAKIVLPCNLQRLMWNAQKIFKVDMRKPVNLSPLHVIDGV 221
Query: 187 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
L + ++ +D +S+ AQ NATLL + +R
Sbjct: 222 RELSKKLVIVGGSDD---------------------------ISKQAQYNATLLMNILLR 254
Query: 367 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
++L +K + + +L +AF WLL E+E+RF QA+A GEMVGA AAQS+GEPA QMTLNT
Sbjct: 255 STLCTKKLCTSSKLNTEAFDWLLGEVESRFMQAIAQPGEMVGALAAQSLGEPAPQMTLNT 314
[183][TOP]
>UniRef100_A8BDP3 RNA polymerase II largest subunit (Fragment) n=1 Tax=Priapulus
caudatus RepID=A8BDP3_PRICU
Length = 434
Score = 129 bits (325), Expect = 1e-28
Identities = 73/180 (40%), Positives = 105/180 (58%)
Frame = +1
Query: 7 EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
EW QL KDR +R VF +G++++ L N++R+IWNA++IF + SDL P +++ GV
Sbjct: 95 EWDQLXKDRXVIR-TVFPSGDSRVVLPCNLQRMIWNAQKIFHINTRSPSDLHPLRVIEGV 153
Query: 187 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
L + ++ ++ LS+ AQ NATL +R
Sbjct: 154 RDLSKKLIIVEGED---------------------------RLSKQAQENATLNINAMLR 186
Query: 367 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
++L +K V E++LT ++F WLL E+E+RFQ A A GEMVG AAQS+GEPATQMTLNT
Sbjct: 187 STLCTKRVAEEYKLTTESFEWLLGEVESRFQHAQAQPGEMVGPLAAQSLGEPATQMTLNT 246
[184][TOP]
>UniRef100_A8BDP1 RNA polymerase II largest subunit (Fragment) n=1 Tax=Paragordius
varius RepID=A8BDP1_PARVA
Length = 467
Score = 129 bits (325), Expect = 1e-28
Identities = 71/181 (39%), Positives = 109/181 (60%)
Frame = +1
Query: 4 KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
+EW ++K+D+ LR ++F TG++K+ L N++R+IWNA++IF + SDL P K+VRG
Sbjct: 94 REWERIKEDQTLLR-QIFPTGDSKVVLPCNLQRIIWNAQKIFRINPRLPSDLHPLKVVRG 152
Query: 184 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
V+ L + V+ + + +S+ AQL+AT L +
Sbjct: 153 VQELSEKLIVV---------------------------KGVDRISQRAQLDATFLMNALI 185
Query: 364 RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
R++L ++ V E +L+ AF W+L EIE+RF+ +L GEMVG +AQS+GEPATQMTLN
Sbjct: 186 RSTLCTRRVAEEFKLSSDAFDWVLGEIESRFRSSLVDPGEMVGPLSAQSLGEPATQMTLN 245
Query: 544 T 546
T
Sbjct: 246 T 246
[185][TOP]
>UniRef100_A9QMH0 DNA-directed RNA polymerase (Fragment) n=1 Tax=Panagrellus
redivivus RepID=A9QMH0_PANRE
Length = 636
Score = 129 bits (323), Expect = 2e-28
Identities = 74/181 (40%), Positives = 106/181 (58%)
Frame = +1
Query: 4 KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
+EW +L +DR LR E+F G+AK L N++RLIWNA++IF V ++L P+ I+ G
Sbjct: 164 QEWRKLCEDRAMLR-EIFPKGDAKTVLPCNLQRLIWNAQKIFHVDLRKPTELHPATIIEG 222
Query: 184 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
V L R +++ + ++S AQ NATLL + +
Sbjct: 223 VRKLGDRLVIVSGTD---------------------------KISRQAQENATLLMNILL 255
Query: 364 RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
R++ A+K V ++LT +AF W++ EIE+RF QA+ GEMVG AAQS+GEPATQMTLN
Sbjct: 256 RSTFATKQVAEVYKLTNEAFEWIIGEIESRFNQAIVQPGEMVGPLAAQSLGEPATQMTLN 315
Query: 544 T 546
T
Sbjct: 316 T 316
[186][TOP]
>UniRef100_Q9BMP3 DNA-directed RNA polymerase (Fragment) n=1 Tax=Monosiga brevicollis
RepID=Q9BMP3_MONBE
Length = 1743
Score = 128 bits (322), Expect = 2e-28
Identities = 76/180 (42%), Positives = 102/180 (56%)
Frame = +1
Query: 7 EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
EW +L+ DR FLR VF GEA + L V + RLI +A++ F++ +DLSP+ + + +
Sbjct: 873 EWQRLQDDRQFLR-SVFPKGEADVVLPVQLRRLIISAQKEFNIDPRRPTDLSPAHVAQAI 931
Query: 187 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
R V+ D+ LS+ AQ NATLLF ++R
Sbjct: 932 RTFTDRLVVIPGDDP---------------------------LSKVAQRNATLLFNCNLR 964
Query: 367 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
+ L+S+ + HRL KAF W+L E+E RF QA A GEMVGA AAQS+GEPATQMTLNT
Sbjct: 965 SVLSSRQCIVRHRLNTKAFDWILGEVEKRFMQAQAQPGEMVGALAAQSLGEPATQMTLNT 1024
[187][TOP]
>UniRef100_A9V5W6 DNA-directed RNA polymerase n=1 Tax=Monosiga brevicollis
RepID=A9V5W6_MONBE
Length = 1307
Score = 128 bits (322), Expect = 2e-28
Identities = 76/180 (42%), Positives = 102/180 (56%)
Frame = +1
Query: 7 EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
EW +L+ DR FLR VF GEA + L V + RLI +A++ F++ +DLSP+ + + +
Sbjct: 437 EWQRLQDDRQFLR-SVFPKGEADVVLPVQLRRLIISAQKEFNIDPRRPTDLSPAHVAQAI 495
Query: 187 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
R V+ D+ LS+ AQ NATLLF ++R
Sbjct: 496 RTFTDRLVVIPGDDP---------------------------LSKVAQRNATLLFNCNLR 528
Query: 367 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
+ L+S+ + HRL KAF W+L E+E RF QA A GEMVGA AAQS+GEPATQMTLNT
Sbjct: 529 SVLSSRQCIVRHRLNTKAFDWILGEVEKRFMQAQAQPGEMVGALAAQSLGEPATQMTLNT 588
[188][TOP]
>UniRef100_P36594 DNA-directed RNA polymerase II subunit rpb1 n=1
Tax=Schizosaccharomyces pombe RepID=RPB1_SCHPO
Length = 1752
Score = 128 bits (322), Expect = 2e-28
Identities = 75/181 (41%), Positives = 104/181 (57%)
Frame = +1
Query: 4 KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
+E+ QL DR+ L +F G+A+ PL VN++R+I NA +IF + +DL PS I+ G
Sbjct: 933 EEYTQLVADRELLCKFIFPKGDARWPLPVNVQRIIQNALQIFHLEAKKPTDLLPSDIING 992
Query: 184 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
+ L+ + + D I R++ Q NATLLFQ+ +
Sbjct: 993 LNELIAKLTIFRGS-----DRITRDV----------------------QNNATLLFQILL 1025
Query: 364 RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
R+ A K V+ E+RL + AF W++ E+E RFQQA+ GEMVG AAQSIGEPATQMTLN
Sbjct: 1026 RSKFAVKRVIMEYRLNKVAFEWIMGEVEARFQQAVVSPGEMVGTLAAQSIGEPATQMTLN 1085
Query: 544 T 546
T
Sbjct: 1086 T 1086
[189][TOP]
>UniRef100_B6JYP8 DNA-directed RNA polymerase n=1 Tax=Schizosaccharomyces japonicus
yFS275 RepID=B6JYP8_SCHJY
Length = 1748
Score = 128 bits (321), Expect = 3e-28
Identities = 77/181 (42%), Positives = 102/181 (56%)
Frame = +1
Query: 4 KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
+E++QL DR+ R +F GEA+ P VN+ R+I N+ +IF + +DL PS I+ G
Sbjct: 933 EEYSQLLTDRELCRGFIFPNGEARWPQPVNVHRIIQNSVQIFHLDSKKPTDLLPSDIIYG 992
Query: 184 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
V L+ + V D D KE+ E NATLLFQ+ +
Sbjct: 993 VRNLISKLSVFRGD-----------------------DRITKEIQE----NATLLFQILL 1025
Query: 364 RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
R+ LA+K V+ E+ L + AF W++ EIE RFQQ GEMVG AAQSIGEPATQMTLN
Sbjct: 1026 RSKLATKRVVMEYHLNKIAFEWIIGEIEARFQQCQVNPGEMVGTLAAQSIGEPATQMTLN 1085
Query: 544 T 546
T
Sbjct: 1086 T 1086
[190][TOP]
>UniRef100_Q25151 DNA-directed RNA polymerase (Fragment) n=1 Tax=Helobdella stagnalis
RepID=Q25151_9ANNE
Length = 1337
Score = 127 bits (320), Expect = 4e-28
Identities = 74/180 (41%), Positives = 106/180 (58%)
Frame = +1
Query: 7 EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
E+ QL +DR +R ++F +G++K+ L N++RLIWNA++IF + S+L P KI+ V
Sbjct: 862 EYKQLLEDRTAIR-QIFPSGDSKIVLPCNLQRLIWNAQKIFRIHTRKPSNLHPVKIIEDV 920
Query: 187 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
L + ++ ++ LS+TA NATLL + VR
Sbjct: 921 RELSKKFMIVKGED---------------------------RLSKTANTNATLLMNILVR 953
Query: 367 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
++L SK V+ E L+ +AF WL+ EIE++F QA GEMVGA AAQS+GEPATQMTLNT
Sbjct: 954 STLCSKRVIEEFHLSTEAFEWLMGEIESKFIQARVQPGEMVGALAAQSLGEPATQMTLNT 1013
[191][TOP]
>UniRef100_Q010D7 DNA-directed RNA polymerase n=1 Tax=Ostreococcus tauri
RepID=Q010D7_OSTTA
Length = 1673
Score = 127 bits (319), Expect = 5e-28
Identities = 74/182 (40%), Positives = 107/182 (58%), Gaps = 2/182 (1%)
Frame = +1
Query: 7 EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQ--NDRSDLSPSKIVR 180
EW +L+KDR LR +VF TG+ + L VN++R+IWNA++ + + + +LS + ++
Sbjct: 946 EWERLQKDRVELR-KVFPTGDPHVHLPVNMKRIIWNAQKQYGMYRPGGSEEELSVTHVIE 1004
Query: 181 GVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVH 360
V LL + V+ + ++A Q N TLLF H
Sbjct: 1005 SVAELLPKLIVVAGTDPLSIEA---------------------------QRNGTLLFFAH 1037
Query: 361 VRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTL 540
VRA+LA+K VL +H+LTR F W++ E+E+RF+ ALAP G+ +G AAQSIGEPATQMTL
Sbjct: 1038 VRANLAAKRVLKDHKLTRAGFDWVIGEVESRFKMALAPPGDGIGVVAAQSIGEPATQMTL 1097
Query: 541 NT 546
NT
Sbjct: 1098 NT 1099
[192][TOP]
>UniRef100_A7R1R2 DNA-directed RNA polymerase n=1 Tax=Vitis vinifera
RepID=A7R1R2_VITVI
Length = 429
Score = 127 bits (318), Expect = 7e-28
Identities = 76/180 (42%), Positives = 108/180 (60%)
Frame = +1
Query: 7 EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
E +L+ DR+ L E+ TG++ + VN++RLIWNA++ F + SD+ +IV V
Sbjct: 207 EVQKLEADRNQLGTEIASTGDSFWSMPVNLKRLIWNAQKTFKIDLRRPSDMHLMEIVEAV 266
Query: 187 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
+ L R +V+ D D I+ E AQ NATLLF + +R
Sbjct: 267 DKLQERLKVVPGD-----DLISME----------------------AQKNATLLFNILLR 299
Query: 367 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
++ +SK VL+E+RL+R+AF W++ EIE+RF Q+L GEM+G AAQSIGEPATQMTLNT
Sbjct: 300 STFSSKRVLNEYRLSREAFDWVIGEIESRFLQSLVSPGEMIGCIAAQSIGEPATQMTLNT 359
[193][TOP]
>UniRef100_C4R4Y0 DNA-directed RNA polymerase n=1 Tax=Pichia pastoris GS115
RepID=C4R4Y0_PICPG
Length = 1743
Score = 127 bits (318), Expect = 7e-28
Identities = 80/180 (44%), Positives = 101/180 (56%)
Frame = +1
Query: 7 EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
E+ QL DR FLR VF G+ PL VN+ R+I NA++IF + + SDL+ +I+ GV
Sbjct: 933 EYEQLVSDRKFLREIVFVNGDHNWPLPVNLRRIIQNAQQIFHLDRAKASDLTIPEIIHGV 992
Query: 187 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
L + VL + EL + AQ NAT LFQ VR
Sbjct: 993 RDLCKKLFVLRGEN---------------------------ELIKEAQQNATSLFQCLVR 1025
Query: 367 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
A LA++ +L E RL R AF W+L IE +FQ++L GEMVG AAQSIGEPATQMTLNT
Sbjct: 1026 ARLATRRILEEFRLNRDAFEWVLGTIEAQFQRSLVHPGEMVGVIAAQSIGEPATQMTLNT 1085
[194][TOP]
>UniRef100_O00820 DNA-directed RNA polymerase (Fragment) n=1 Tax=Acanthamoeba
castellanii RepID=O00820_ACACA
Length = 1569
Score = 126 bits (317), Expect = 9e-28
Identities = 75/181 (41%), Positives = 105/181 (58%)
Frame = +1
Query: 4 KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
KE+ Q+ DR LR ++F G+ + PL VN+ R+I NA++IF + SDL P +IV
Sbjct: 860 KEFEQILADRRLLREKIFLAGDDRWPLPVNLTRMILNAQKIFHLGPKKVSDLDPCQIVED 919
Query: 184 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
+ L+ R V+ +D +S+ AQ NA LLF + +
Sbjct: 920 LGNLIERLVVIPGQDD---------------------------ISKEAQANAILLFSILL 952
Query: 364 RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
R +LAS+ VL E+RL + ++ WLL EI +RF ++L GEM+GA AAQSIGEPATQMTLN
Sbjct: 953 RFTLASRRVLQEYRLDQISWDWLLGEITDRFYKSLCDPGEMIGALAAQSIGEPATQMTLN 1012
Query: 544 T 546
T
Sbjct: 1013 T 1013
[195][TOP]
>UniRef100_A1YIB1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Phragmidium sp. MB
RepID=A1YIB1_9BASI
Length = 1013
Score = 126 bits (316), Expect = 1e-27
Identities = 76/175 (43%), Positives = 98/175 (56%)
Frame = +1
Query: 4 KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
KEW QL KDR LR +F G + PL VNI R+I NA++IF + SDL P I++
Sbjct: 866 KEWEQLIKDRKMLREFIFTDGNGRKPLPVNIRRIIQNAQQIFHIDFRKPSDLPPPDIIQM 925
Query: 184 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
V L +R V+ D+ LS AQ NATLLF++ +
Sbjct: 926 VNDLCNRLIVVRGDD---------------------------ALSRAAQXNATLLFRILL 958
Query: 364 RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPAT 528
R++ A++ VL E L+R+AF W+L EIE RF Q+LA GEM G AAQSIGEPAT
Sbjct: 959 RSNFATRRVLEEFHLSREAFVWVLGEIEARFNQSLAAPGEMCGTLAAQSIGEPAT 1013
[196][TOP]
>UniRef100_A9QMR7 DNA-directed RNA polymerase (Fragment) n=1 Tax=Bunonema reticulatum
RepID=A9QMR7_9BILA
Length = 614
Score = 125 bits (315), Expect = 2e-27
Identities = 77/181 (42%), Positives = 102/181 (56%)
Frame = +1
Query: 4 KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
+EW QL KDR LR E+F G+AK+ L N++RLIWNA++IF V LSP +++ G
Sbjct: 149 EEWKQLVKDRRTLR-EIFPKGDAKVVLPCNVQRLIWNAQKIFHVEIRRPVSLSPLRVIEG 207
Query: 184 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
V L R V+ S ED +S+ AQ NATLL ++ +
Sbjct: 208 VRELTARL-VIVSGED--------------------------HISQHAQENATLLIKILL 240
Query: 364 RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
R++L S+ + +HRL +AF WLL E+ RFQQA A AAQS+GEPATQMTLN
Sbjct: 241 RSTLCSRKMAEQHRLNAEAFEWLLGEVXTRFQQAXXXXXXXXXALAAQSLGEPATQMTLN 300
Query: 544 T 546
T
Sbjct: 301 T 301
[197][TOP]
>UniRef100_A7S8F9 DNA-directed RNA polymerase n=1 Tax=Nematostella vectensis
RepID=A7S8F9_NEMVE
Length = 1929
Score = 125 bits (315), Expect = 2e-27
Identities = 74/180 (41%), Positives = 105/180 (58%)
Frame = +1
Query: 7 EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
E+ +L++DR+ LR ++ +G A++ L VN+ RLIWNA++ F + SDL P +++ GV
Sbjct: 951 EFNKLQEDREILR-KIQPSGNARVALPVNLSRLIWNAQKTFHITNRSASDLHPLRVIEGV 1009
Query: 187 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
L + V+ + ED +S+ AQ NATLLF + +R
Sbjct: 1010 RELSKKL-VIVAGED--------------------------HISKQAQFNATLLFNILLR 1042
Query: 367 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
++L +K V E L+ +AF WLL EIE RF + GEMVGA AAQS+GEPATQMTLNT
Sbjct: 1043 STLCTKRVAEEFHLSSEAFEWLLGEIETRFNHSHVKPGEMVGALAAQSLGEPATQMTLNT 1102
[198][TOP]
>UniRef100_B0DB45 DNA-directed RNA polymerase n=1 Tax=Laccaria bicolor S238N-H82
RepID=B0DB45_LACBS
Length = 1742
Score = 125 bits (315), Expect = 2e-27
Identities = 77/183 (42%), Positives = 103/183 (56%), Gaps = 2/183 (1%)
Frame = +1
Query: 4 KEWAQLKKDRDFLRHEVFKTGEAKLP--LAVNIERLIWNAKRIFDVRQNDRSDLSPSKIV 177
+E+A+L +DR LRH +F P L VN+ R++ NA +IF + + SDL P IV
Sbjct: 935 EEFARLVEDRRLLRHFIFPRVPTTQPHYLPVNLHRIVQNAIQIFHIDRRKPSDLEPGYIV 994
Query: 178 RGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQV 357
GV L R V+ D+ LS AQLNATL F++
Sbjct: 995 DGVNELCGRLVVVRGDD---------------------------PLSREAQLNATLTFRM 1027
Query: 358 HVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMT 537
H+RA+ AS+ VL + LTR+AF W++ E+E +F Q++ GEM G AAQSIGEPATQMT
Sbjct: 1028 HLRATFASRRVLEKFHLTREAFDWVMGEVETKFNQSVVHPGEMCGTLAAQSIGEPATQMT 1087
Query: 538 LNT 546
LNT
Sbjct: 1088 LNT 1090
[199][TOP]
>UniRef100_A8N128 DNA-directed RNA polymerase n=1 Tax=Coprinopsis cinerea okayama7#130
RepID=A8N128_COPC7
Length = 1642
Score = 125 bits (314), Expect = 2e-27
Identities = 75/183 (40%), Positives = 108/183 (59%), Gaps = 2/183 (1%)
Frame = +1
Query: 4 KEWAQLKKDRDFLRHEVFKTGEAKLP--LAVNIERLIWNAKRIFDVRQNDRSDLSPSKIV 177
+E+A+L +DR LR+ +F A + L VN++RL+ NA +IF + + SDL P+ IV
Sbjct: 882 EEYARLVEDRRLLRNFIFPRRSANVDFYLPVNLQRLVQNASQIFHIDRRKPSDLDPAYIV 941
Query: 178 RGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQV 357
+ L R ++ D+ LS+ AQ N+TLLF++
Sbjct: 942 DSIHELGKRLVIVRGDD---------------------------PLSKEAQDNSTLLFRM 974
Query: 358 HVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMT 537
H+RA+ A++ V+ + RLTR+AF W+L EIE +F Q++A GEM G AAQSIGEPATQMT
Sbjct: 975 HLRATFAARKVIEQMRLTREAFEWILGEIETKFNQSIAHPGEMCGTLAAQSIGEPATQMT 1034
Query: 538 LNT 546
LNT
Sbjct: 1035 LNT 1037
[200][TOP]
>UniRef100_UPI0000F24379 DNA-directed RNA polymerase II largest subunit (RNA polymerase II
subunit 1) (B220) n=1 Tax=Pichia stipitis CBS 6054
RepID=UPI0000F24379
Length = 1739
Score = 124 bits (311), Expect = 5e-27
Identities = 75/181 (41%), Positives = 101/181 (55%)
Frame = +1
Query: 4 KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
+E+ QL DR +LR F G+ PL VN+ R+I NA++IF + SDL +++ G
Sbjct: 931 EEYKQLLDDRKYLREVCFPNGDFSWPLPVNLRRIIQNAQQIFHNGRYKASDLRLDEVIVG 990
Query: 184 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
V L + V+ D EL + AQ NATLLFQ V
Sbjct: 991 VRSLCEKLLVVRGDT---------------------------ELVKEAQANATLLFQCLV 1023
Query: 364 RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
R+ LAS+ V+ E +L R +F W++ EIE +FQ+++ GEMVG AAQSIGEPATQMTLN
Sbjct: 1024 RSRLASRRVIEEFKLNRSSFEWVVGEIETQFQKSIVHPGEMVGVIAAQSIGEPATQMTLN 1083
Query: 544 T 546
T
Sbjct: 1084 T 1084
[201][TOP]
>UniRef100_A9QMS4 DNA-directed RNA polymerase (Fragment) n=1 Tax=Poikilolaimus
oxycercus RepID=A9QMS4_9BILA
Length = 612
Score = 124 bits (311), Expect = 5e-27
Identities = 69/180 (38%), Positives = 104/180 (57%)
Frame = +1
Query: 7 EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
EW QLK+DR LR ++F G +K+ L NI+RLIWNA++IF V + ++LSP ++ +
Sbjct: 160 EWEQLKEDRGLLR-KIFPKGGSKVVLPCNIQRLIWNAQKIFRVDNRNPTELSPLYVIEAI 218
Query: 187 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
L + +++ D+ ++S+ AQ NATLL + +R
Sbjct: 219 RKLSEKLVIVSGDD---------------------------KISQQAQYNATLLMNILIR 251
Query: 367 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
++L SK V +HRL ++AF ++L EIENRFQ+A+ G AQ +G+PATQMTLNT
Sbjct: 252 STLCSKQVAEKHRLNQEAFEYILGEIENRFQRAIVXXXXXXGVLXAQXLGQPATQMTLNT 311
[202][TOP]
>UniRef100_A3GID7 DNA-directed RNA polymerase n=1 Tax=Pichia stipitis
RepID=A3GID7_PICST
Length = 1739
Score = 124 bits (311), Expect = 5e-27
Identities = 75/181 (41%), Positives = 101/181 (55%)
Frame = +1
Query: 4 KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
+E+ QL DR +LR F G+ PL VN+ R+I NA++IF + SDL +++ G
Sbjct: 931 EEYKQLLDDRKYLREVCFPNGDFSWPLPVNLRRIIQNAQQIFHNGRYKASDLRLDEVIVG 990
Query: 184 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
V L + V+ D EL + AQ NATLLFQ V
Sbjct: 991 VRSLCEKLLVVRGDT---------------------------ELVKEAQANATLLFQCLV 1023
Query: 364 RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
R+ LAS+ V+ E +L R +F W++ EIE +FQ+++ GEMVG AAQSIGEPATQMTLN
Sbjct: 1024 RSRLASRRVIEEFKLNRSSFEWVVGEIETQFQKSIVHPGEMVGVIAAQSIGEPATQMTLN 1083
Query: 544 T 546
T
Sbjct: 1084 T 1084
[203][TOP]
>UniRef100_Q9BMP2 DNA-directed RNA polymerase (Fragment) n=1 Tax=Stylonychia mytilus
RepID=Q9BMP2_STYMT
Length = 1678
Score = 124 bits (310), Expect = 6e-27
Identities = 71/180 (39%), Positives = 107/180 (59%)
Frame = +1
Query: 7 EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
E+ Q+ +DRD LR + K+ E + LAVN+ R+IWNAK F +R N +S+L P+ ++ +
Sbjct: 843 EYKQIIQDRDDLRFTILKSQEDAVHLAVNVPRIIWNAKEQFSIRPNQKSNLEPTYVLSRL 902
Query: 187 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
+ L+ D+ A + + P L A ++T LF++++R
Sbjct: 903 QNLM--------DDLAPIPGVMIHKDP---------------LILEANSDSTWLFKIYLR 939
Query: 367 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
+ L SK V+ + RL++ AF W+L EI++RF QAL GEMVG+ AQS+GEPATQMTLNT
Sbjct: 940 SLLNSKAVIQQERLSKDAFNWILGEIKSRFDQALVNPGEMVGSIGAQSMGEPATQMTLNT 999
[204][TOP]
>UniRef100_A9QMG5 DNA-directed RNA polymerase (Fragment) n=1 Tax=Mesorhabditis
longespiculosa RepID=A9QMG5_9BILA
Length = 623
Score = 124 bits (310), Expect = 6e-27
Identities = 71/180 (39%), Positives = 103/180 (57%)
Frame = +1
Query: 7 EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
EW +L+ DR LR ++F G+ ++ L N++RLIWNA++IF V ++LSP +++ GV
Sbjct: 164 EWQRLEDDRRLLR-KIFPRGDNRVVLPCNLQRLIWNAQKIFKVETRKTTNLSPLRVIEGV 222
Query: 187 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
L R ++ S ED +S+ AQ NATLL + +R
Sbjct: 223 RELSKRL-IIVSGED--------------------------RISQQAQYNATLLMNILLR 255
Query: 367 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
++L SK + +H+L ++ F WLL EIE+RFQQA+ G A QS+GEPATQMTLNT
Sbjct: 256 STLCSKQMAEKHKLNQEGFEWLLGEIEHRFQQAIVXXXXXXGXLAXQSLGEPATQMTLNT 315
[205][TOP]
>UniRef100_A1YIB6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Basidiobolus ranarum
RepID=A1YIB6_9FUNG
Length = 1018
Score = 123 bits (308), Expect = 1e-26
Identities = 72/175 (41%), Positives = 99/175 (56%)
Frame = +1
Query: 4 KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
+E+ QL DR LR +F +G+ PL N+ RL+WNA+ IF + + S+L P +I+ G
Sbjct: 871 EEYRQLCDDRRVLREFIFTSGDQAWPLPGNLRRLVWNAQNIFHIDKRKPSNLHPLQIIEG 930
Query: 184 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
V+LL+ R V+ + +LS AQLNATLL+Q +
Sbjct: 931 VKLLIDRLIVVRGSD---------------------------KLSNEAQLNATLLYQCLL 963
Query: 364 RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPAT 528
R++L++K VL + L +AF W+L EIE RFQ A GEMVG AAQSIGEPAT
Sbjct: 964 RSTLSTKRVLEDFHLNAQAFEWILGEIETRFQTAQVAPGEMVGTVAAQSIGEPAT 1018
[206][TOP]
>UniRef100_UPI000151A8B3 hypothetical protein PGUG_01105 n=1 Tax=Pichia guilliermondii ATCC
6260 RepID=UPI000151A8B3
Length = 1018
Score = 122 bits (307), Expect = 1e-26
Identities = 76/181 (41%), Positives = 101/181 (55%)
Frame = +1
Query: 4 KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
+E+ QL DR +LR F G+ PL VN+ R+I NA+++F ++ SDL +IV G
Sbjct: 197 EEYEQLCNDRRYLREVCFTNGDYTWPLPVNLRRIIQNAQQLFHGGRHKASDLRLEEIVEG 256
Query: 184 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
V+ L + VL D L + +Q NATLLFQ V
Sbjct: 257 VKELCKKLLVLRGDSP---------------------------LVKESQENATLLFQCLV 289
Query: 364 RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
R+ LA++ V+ E RL R +F W + EIE +FQ++L GEMVG AAQSIGEPATQMTLN
Sbjct: 290 RSRLATRRVIEEFRLNRMSFEWAMGEIETQFQKSLVHPGEMVGVIAAQSIGEPATQMTLN 349
Query: 544 T 546
T
Sbjct: 350 T 350
[207][TOP]
>UniRef100_A9QME4 RNA polymerase 2 (Fragment) n=1 Tax=Oscheius tipulae
RepID=A9QME4_OSCTI
Length = 446
Score = 122 bits (307), Expect = 1e-26
Identities = 69/164 (42%), Positives = 97/164 (59%)
Frame = +1
Query: 55 FKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDA 234
F G+ K+ L N++RLIWNA++IF V + + L+P ++RGV+ L + ++ ED
Sbjct: 1 FPNGDNKVVLPCNLQRLIWNAQKIFHVETREVTSLNPLAVIRGVKNLSDKL-IIVGGED- 58
Query: 235 EVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTR 414
+S AQ NATLL + +R++L SK + + H+L +
Sbjct: 59 -------------------------RISRQAQFNATLLMNILLRSTLCSKKMATTHKLNQ 93
Query: 415 KAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
+AF WLL EIE RF+ A+A GEMVGA AAQS+GEPATQMTLNT
Sbjct: 94 EAFDWLLGEIETRFKSAIAQPGEMVGALAAQSLGEPATQMTLNT 137
[208][TOP]
>UniRef100_A5DCV3 DNA-directed RNA polymerase II subunit RPB1 (Fragments) n=1
Tax=Pichia guilliermondii RepID=RPB1_PICGU
Length = 1579
Score = 122 bits (307), Expect = 1e-26
Identities = 76/181 (41%), Positives = 101/181 (55%)
Frame = +1
Query: 4 KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
+E+ QL DR +LR F G+ PL VN+ R+I NA+++F ++ SDL +IV G
Sbjct: 763 EEYEQLCNDRRYLREVCFTNGDYTWPLPVNLRRIIQNAQQLFHGGRHKASDLRLEEIVEG 822
Query: 184 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
V+ L + VL D L + +Q NATLLFQ V
Sbjct: 823 VKELCKKLLVLRGDSP---------------------------LVKESQENATLLFQCLV 855
Query: 364 RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
R+ LA++ V+ E RL R +F W + EIE +FQ++L GEMVG AAQSIGEPATQMTLN
Sbjct: 856 RSRLATRRVIEEFRLNRMSFEWAMGEIETQFQKSLVHPGEMVGVIAAQSIGEPATQMTLN 915
Query: 544 T 546
T
Sbjct: 916 T 916
[209][TOP]
>UniRef100_Q9U5F6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Eptatretus burgeri
RepID=Q9U5F6_EPTBU
Length = 595
Score = 122 bits (306), Expect = 2e-26
Identities = 67/171 (39%), Positives = 100/171 (58%)
Frame = +1
Query: 4 KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
+E+ Q++ DR+ LR VF TG++K+ L N++R+IWNA++IF + +DL+P ++V G
Sbjct: 453 REFEQIRDDREVLR-AVFPTGDSKVVLPCNLQRMIWNAQKIFHINTRSSTDLNPLRVVEG 511
Query: 184 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
V L + +++ D+ +S AQ NATLLF HV
Sbjct: 512 VNDLTQKLQIVKGDDP---------------------------ISRQAQQNATLLFNCHV 544
Query: 364 RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIG 516
RA+L ++ + EHRL+ +AF WLL EIE +F A+ GEMVGA AAQS+G
Sbjct: 545 RATLCTRRLAEEHRLSSEAFEWLLGEIEAKFNHAIVHPGEMVGALAAQSLG 595
[210][TOP]
>UniRef100_Q8MX26 DNA-directed RNA polymerase (Fragment) n=1 Tax=Cercomonas sp. ATCC
50319 RepID=Q8MX26_9EUKA
Length = 1014
Score = 122 bits (305), Expect = 2e-26
Identities = 71/177 (40%), Positives = 103/177 (58%)
Frame = +1
Query: 7 EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
E QL+ DR LR ++ TGE + L VN++RLIWNA++ F V + +S++ P +++ V
Sbjct: 865 ELKQLRDDRQLLRDKIQPTGEDMVHLPVNLKRLIWNAQKRFHVDRFSKSNIEPQQVIADV 924
Query: 187 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
+ L R V+ + LS AQ NAT LF++ +R
Sbjct: 925 KSLAERLIVVRGTDP---------------------------LSLQAQTNATTLFKIMLR 957
Query: 367 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMT 537
+ L++K VL ++RL R AF+WL+ EIE RF QA+ GE+VG+ AAQ+IGEPATQMT
Sbjct: 958 SVLSAKRVLKDYRLNRDAFSWLIGEIEARFNQAIVHPGEVVGSIAAQAIGEPATQMT 1014
[211][TOP]
>UniRef100_UPI00003BD271 hypothetical protein DEHA0A14036g n=1 Tax=Debaryomyces hansenii
CBS767 RepID=UPI00003BD271
Length = 1749
Score = 121 bits (304), Expect = 3e-26
Identities = 73/181 (40%), Positives = 105/181 (58%)
Frame = +1
Query: 4 KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
+E+ QL+ DR +LR F G+ PL VN+ R+I NA++IF ++ SDL ++VRG
Sbjct: 936 EEYRQLEADRRYLRDVCFPNGDFNWPLPVNLRRIIQNAQQIFHNGRHKASDLRLDEVVRG 995
Query: 184 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
V+ L + V+ L++ AQ NATLLFQ +
Sbjct: 996 VQDLCTKLLVIRGKT---------------------------ALTKEAQENATLLFQCLL 1028
Query: 364 RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
R+ LA++ V+ E +L+R +F W++ EIE +FQ+++ GEMVG AAQSIGEPATQMTLN
Sbjct: 1029 RSRLATRRVIEEFKLSRISFEWVMGEIETQFQKSIVHPGEMVGVIAAQSIGEPATQMTLN 1088
Query: 544 T 546
T
Sbjct: 1089 T 1089
[212][TOP]
>UniRef100_Q5KGG3 DNA-directed RNA polymerase n=1 Tax=Filobasidiella neoformans
RepID=Q5KGG3_CRYNE
Length = 1786
Score = 121 bits (304), Expect = 3e-26
Identities = 72/181 (39%), Positives = 103/181 (56%)
Frame = +1
Query: 4 KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
+E+AQ+ +DR LR E++ G PL VNI+R+I N+++IF + SDL P ++
Sbjct: 946 EEFAQISEDRRILRSEIYPDGTPGHPLPVNIQRVIQNSQQIFHIDPRVPSDLDPVYLLEQ 1005
Query: 184 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
+ L R V+ D+ +LS AQ NATL+F + +
Sbjct: 1006 RDALADRLLVVRGDD---------------------------KLSRAAQKNATLVFNMLL 1038
Query: 364 RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
R+ LA++ VL E+ L R+AF W++ E+E F +A+ A EMVG AAQSIGEPATQMTLN
Sbjct: 1039 RSHLATRRVLEEYHLNREAFDWVIGEVEQIFNKAVVNAAEMVGTLAAQSIGEPATQMTLN 1098
Query: 544 T 546
T
Sbjct: 1099 T 1099
[213][TOP]
>UniRef100_C0NEY2 DNA-directed RNA polymerase n=1 Tax=Ajellomyces capsulatus G186AR
RepID=C0NEY2_AJECG
Length = 1234
Score = 121 bits (304), Expect = 3e-26
Identities = 77/181 (42%), Positives = 106/181 (58%)
Frame = +1
Query: 4 KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
+EW QL KDR F+R V K E + L +N++R++ +AK IF +R+ SDL P++++
Sbjct: 441 EEWEQLLKDRAFMR-SVAKEDEEMMQLPINVQRILESAKTIFRIREGAISDLHPAEVIPQ 499
Query: 184 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
V LL R V+ D D I+RE AQ +ATLLF+ +
Sbjct: 500 VRALLERLVVVRGD-----DVISRE----------------------AQESATLLFKAQL 532
Query: 364 RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
R+ LA + ++ E+ L R AF +L IE+RF +A+A GEMVG AAQSIGEPATQMTLN
Sbjct: 533 RSRLAFRRLVVEYSLNRLAFQHVLGAIESRFSKAMANPGEMVGVLAAQSIGEPATQMTLN 592
Query: 544 T 546
T
Sbjct: 593 T 593
[214][TOP]
>UniRef100_B5RSM9 DNA-directed RNA polymerase n=1 Tax=Debaryomyces hansenii
RepID=B5RSM9_DEBHA
Length = 1749
Score = 121 bits (304), Expect = 3e-26
Identities = 73/181 (40%), Positives = 105/181 (58%)
Frame = +1
Query: 4 KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
+E+ QL+ DR +LR F G+ PL VN+ R+I NA++IF ++ SDL ++VRG
Sbjct: 936 EEYRQLEADRRYLRDVCFPNGDFNWPLPVNLRRIIQNAQQIFHNGRHKASDLRLDEVVRG 995
Query: 184 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
V+ L + V+ L++ AQ NATLLFQ +
Sbjct: 996 VQDLCTKLLVIRGKT---------------------------ALTKEAQENATLLFQCLL 1028
Query: 364 RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
R+ LA++ V+ E +L+R +F W++ EIE +FQ+++ GEMVG AAQSIGEPATQMTLN
Sbjct: 1029 RSRLATRRVIEEFKLSRISFEWVMGEIETQFQKSIVHPGEMVGVIAAQSIGEPATQMTLN 1088
Query: 544 T 546
T
Sbjct: 1089 T 1089
[215][TOP]
>UniRef100_B4YT35 DNA-directed RNA polymerase (Fragment) n=1 Tax=Tenomerga cinerea
RepID=B4YT35_9COLE
Length = 553
Score = 121 bits (303), Expect = 4e-26
Identities = 69/166 (41%), Positives = 96/166 (57%)
Frame = +1
Query: 4 KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
+EW QL KDR+ LR ++F TGE+K+ L N++R+IWN ++IF + + +DLSP ++++G
Sbjct: 416 REWDQLTKDREALR-QIFPTGESKVVLPCNLQRMIWNVQKIFHINKRATTDLSPLRVIQG 474
Query: 184 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
V LL + ++ D+ LS A NATLLFQ V
Sbjct: 475 VRQLLQKCIIVAGDD---------------------------RLSRQANENATLLFQCLV 507
Query: 364 RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATA 501
RA+L +K V E RL+ +AF WL+ EIE RFQQA GEMVGA A
Sbjct: 508 RATLCTKCVSEEFRLSTEAFEWLIGEIETRFQQATMCPGEMVGALA 553
[216][TOP]
>UniRef100_Q5ACI7 DNA-directed RNA polymerase n=1 Tax=Candida albicans
RepID=Q5ACI7_CANAL
Length = 1728
Score = 121 bits (303), Expect = 4e-26
Identities = 75/181 (41%), Positives = 102/181 (56%)
Frame = +1
Query: 4 KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
+E+ QL KDR +LR F G+ PL VN+ R+I NA++IF + SDL +IV G
Sbjct: 931 EEYNQLLKDRKYLREVCFPNGDFSWPLPVNLRRIIQNAQQIFHNGRYRASDLRLEEIVLG 990
Query: 184 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
V+ L + V+ D L + AQ NATLLFQ +
Sbjct: 991 VKELCMKLLVVRGDTP---------------------------LVKEAQENATLLFQCLL 1023
Query: 364 RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
R+ LA++ V+ E +L R +F W++ EIE +FQ+++ GEMVG AAQSIGEPATQMTLN
Sbjct: 1024 RSRLAARRVIEEFKLNRASFEWVMGEIETQFQKSIVHPGEMVGVVAAQSIGEPATQMTLN 1083
Query: 544 T 546
T
Sbjct: 1084 T 1084
[217][TOP]
>UniRef100_C4YN85 DNA-directed RNA polymerase n=1 Tax=Candida albicans
RepID=C4YN85_CANAL
Length = 1742
Score = 121 bits (303), Expect = 4e-26
Identities = 75/181 (41%), Positives = 102/181 (56%)
Frame = +1
Query: 4 KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
+E+ QL KDR +LR F G+ PL VN+ R+I NA++IF + SDL +IV G
Sbjct: 931 EEYNQLLKDRKYLREVCFPNGDFSWPLPVNLRRIIQNAQQIFHNGRYRASDLRLEEIVLG 990
Query: 184 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
V+ L + V+ D L + AQ NATLLFQ +
Sbjct: 991 VKELCMKLLVVRGDTP---------------------------LVKEAQENATLLFQCLL 1023
Query: 364 RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
R+ LA++ V+ E +L R +F W++ EIE +FQ+++ GEMVG AAQSIGEPATQMTLN
Sbjct: 1024 RSRLAARRVIEEFKLNRASFEWVMGEIETQFQKSIVHPGEMVGVVAAQSIGEPATQMTLN 1083
Query: 544 T 546
T
Sbjct: 1084 T 1084
[218][TOP]
>UniRef100_C4Y5N4 DNA-directed RNA polymerase n=1 Tax=Clavispora lusitaniae ATCC 42720
RepID=C4Y5N4_CLAL4
Length = 1402
Score = 121 bits (303), Expect = 4e-26
Identities = 73/180 (40%), Positives = 101/180 (56%)
Frame = +1
Query: 7 EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
E+ QL KDR +LR F G+ PL VN+ R+I NA++IF + SDL +IV GV
Sbjct: 891 EYEQLLKDRKYLREVCFPNGDFNWPLPVNLRRIIQNAQQIFHSGRQRASDLKLDEIVEGV 950
Query: 187 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
+ L + V+ L++ AQ +ATLLFQ VR
Sbjct: 951 KALCSKLLVIRGKS---------------------------RLAKEAQEDATLLFQCLVR 983
Query: 367 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
+ LA++ ++ E +L+R +F W+ EIE +FQ+++ GEMVG AAQSIGEPATQMTLNT
Sbjct: 984 SRLAARRIIEEFKLSRISFEWVCGEIETQFQKSIVHPGEMVGVIAAQSIGEPATQMTLNT 1043
[219][TOP]
>UniRef100_A5E6J4 DNA-directed RNA polymerase n=1 Tax=Lodderomyces elongisporus
RepID=A5E6J4_LODEL
Length = 1745
Score = 121 bits (303), Expect = 4e-26
Identities = 76/181 (41%), Positives = 101/181 (55%)
Frame = +1
Query: 4 KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
+E+ QL +DR +LR VF G+ PL VN+ R+I NA++IF ++ SDL +IV
Sbjct: 925 EEYNQLLEDRKYLRDVVFPNGDFSWPLPVNLRRIIQNAQQIFHSGRDKPSDLRLDEIVES 984
Query: 184 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
V L + V+ D L + AQ NATLLFQ V
Sbjct: 985 VRDLCTKFLVVRGD---------------------------TPLMKEAQENATLLFQCLV 1017
Query: 364 RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
R+ LAS+ V+ E +L + +F W L EIE +FQ+++ GEMVG AAQSIGEPATQMTLN
Sbjct: 1018 RSRLASRRVIEEFKLNKASFEWALGEIETQFQKSVVHPGEMVGVVAAQSIGEPATQMTLN 1077
Query: 544 T 546
T
Sbjct: 1078 T 1078
[220][TOP]
>UniRef100_A1YIA7 DNA-directed RNA polymerase (Fragment) n=1 Tax=Pichia kudriavzevii
RepID=A1YIA7_ISSOR
Length = 1647
Score = 121 bits (303), Expect = 4e-26
Identities = 74/181 (40%), Positives = 104/181 (57%)
Frame = +1
Query: 4 KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
+E+ QL KDR++LR VF GE PL VN+ R++ NA++IF V + SDL+ +IV+
Sbjct: 854 EEYEQLLKDREYLRTVVFPDGENNWPLPVNVRRIVQNAQQIFHVDRYKASDLTIEEIVKS 913
Query: 184 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
V+ L + V+ D +A RE N+TLLFQ +
Sbjct: 914 VQELCKKFTVVRGDGGCLTEA--RE-------------------------NSTLLFQCLI 946
Query: 364 RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
R+ LA++ VL E++L + AF W++ I +F ++L GEMVG AAQSIGEPATQMTLN
Sbjct: 947 RSKLATRRVLEEYKLNKDAFEWVVGTIAQQFARSLVNPGEMVGVVAAQSIGEPATQMTLN 1006
Query: 544 T 546
T
Sbjct: 1007 T 1007
[221][TOP]
>UniRef100_UPI000187E3DF hypothetical protein MPER_04443 n=1 Tax=Moniliophthora perniciosa
FA553 RepID=UPI000187E3DF
Length = 343
Score = 120 bits (302), Expect = 5e-26
Identities = 74/183 (40%), Positives = 102/183 (55%), Gaps = 2/183 (1%)
Frame = +1
Query: 4 KEWAQLKKDRDFLRHEVFKTGEAKLP--LAVNIERLIWNAKRIFDVRQNDRSDLSPSKIV 177
+E+ L DR LRH +F + + L VN+ R++ NA +IF + + SDL P+ IV
Sbjct: 136 EEYTALVNDRQTLRHFIFPRCDPSINQYLPVNLSRIVQNAVQIFHIDRRKPSDLEPAYIV 195
Query: 178 RGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQV 357
V+ L R V+ ++D LS AQ NATL F++
Sbjct: 196 DAVKALCERLIVVRGNDD---------------------------LSREAQDNATLRFRM 228
Query: 358 HVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMT 537
H+RA+ AS+ VL + L R+AF W+L E+E++F Q+L GEM G AAQSIGEPATQMT
Sbjct: 229 HLRATFASRRVLEKFHLNREAFEWVLGEVESKFNQSLVNPGEMCGTLAAQSIGEPATQMT 288
Query: 538 LNT 546
LNT
Sbjct: 289 LNT 291
[222][TOP]
>UniRef100_A4S3M0 DNA-directed RNA polymerase n=1 Tax=Ostreococcus lucimarinus CCE9901
RepID=A4S3M0_OSTLU
Length = 1646
Score = 120 bits (302), Expect = 5e-26
Identities = 72/182 (39%), Positives = 105/182 (57%), Gaps = 2/182 (1%)
Frame = +1
Query: 7 EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQND--RSDLSPSKIVR 180
EW +L++DR LR + TG+ + L VN++R++WNA++ + + + D ++ + I+
Sbjct: 926 EWDRLQRDRVELR-TICPTGDPHVHLPVNMKRILWNAQKQYGLYRPDSGEEEVKVTHIIE 984
Query: 181 GVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVH 360
V LL + V+ + V+A Q N T+LF H
Sbjct: 985 SVAELLPKLIVVPGTDPLSVEA---------------------------QRNGTMLFFAH 1017
Query: 361 VRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTL 540
VRA+LA+K VL EH+LTR F W++ EIE+RF+ ALAP G+ +G AAQSIGEPATQMTL
Sbjct: 1018 VRANLAAKRVLKEHKLTRAGFDWVIGEIESRFKMALAPPGDGIGTVAAQSIGEPATQMTL 1077
Query: 541 NT 546
NT
Sbjct: 1078 NT 1079
[223][TOP]
>UniRef100_C5GKA7 DNA-directed RNA polymerase n=2 Tax=Ajellomyces dermatitidis
RepID=C5GKA7_AJEDR
Length = 1746
Score = 120 bits (302), Expect = 5e-26
Identities = 76/181 (41%), Positives = 106/181 (58%)
Frame = +1
Query: 4 KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
+EW QL KDR F+R V K E + L +N++R++ +AK IF +R+ SDL P++++
Sbjct: 954 EEWEQLLKDRAFMR-SVAKEDEEMMQLPINVQRILESAKTIFRIREGAISDLHPAEVIPQ 1012
Query: 184 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
+ LL R V+ D D I+RE AQ +ATLLF+ +
Sbjct: 1013 IRALLDRLIVVRGD-----DVISRE----------------------AQESATLLFKAQL 1045
Query: 364 RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
R+ LA + ++ E+ L R AF +L IE+RF +A+A GEMVG AAQSIGEPATQMTLN
Sbjct: 1046 RSRLAFRRLVVEYSLNRLAFQHVLGAIESRFSKAMANPGEMVGVLAAQSIGEPATQMTLN 1105
Query: 544 T 546
T
Sbjct: 1106 T 1106
[224][TOP]
>UniRef100_B9WN64 DNA-directed RNA polymerase n=1 Tax=Candida dubliniensis CD36
RepID=B9WN64_CANDC
Length = 1735
Score = 120 bits (302), Expect = 5e-26
Identities = 75/181 (41%), Positives = 101/181 (55%)
Frame = +1
Query: 4 KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
+E+ QL KDR +LR F G+ PL VN+ R+I NA++IF + SDL +I+ G
Sbjct: 931 EEYNQLLKDRKYLREVCFPNGDFSWPLPVNLRRIIQNAQQIFHNGRYRASDLRLEEIIFG 990
Query: 184 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
V L + V+ D L + AQ NATLLFQ +
Sbjct: 991 VRELCKKLLVVRGDTP---------------------------LVKEAQENATLLFQCLL 1023
Query: 364 RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
R+ LA++ V+ E +L R +F W+L EIE +FQ+++ GEMVG AAQSIGEPATQMTLN
Sbjct: 1024 RSRLAARRVIEEFKLNRVSFEWVLGEIETQFQKSIVHPGEMVGVVAAQSIGEPATQMTLN 1083
Query: 544 T 546
T
Sbjct: 1084 T 1084
[225][TOP]
>UniRef100_A6QYA7 DNA-directed RNA polymerase n=1 Tax=Ajellomyces capsulatus NAm1
RepID=A6QYA7_AJECN
Length = 1747
Score = 120 bits (302), Expect = 5e-26
Identities = 76/181 (41%), Positives = 106/181 (58%)
Frame = +1
Query: 4 KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
+EW QL KDR F+R V K E + L +N++R++ +AK IF +R+ SDL P++++
Sbjct: 954 EEWEQLLKDRAFMR-SVAKEDEEMMQLPINVQRILESAKTIFRIREGAISDLHPAEVIPQ 1012
Query: 184 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
V +L R V+ D D I+RE AQ +ATLLF+ +
Sbjct: 1013 VRAMLERLVVVRGD-----DVISRE----------------------AQESATLLFKAQL 1045
Query: 364 RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
R+ LA + ++ E+ L R AF +L IE+RF +A+A GEMVG AAQSIGEPATQMTLN
Sbjct: 1046 RSRLAFRRLVVEYSLNRLAFQHVLGAIESRFSKAMANPGEMVGVLAAQSIGEPATQMTLN 1105
Query: 544 T 546
T
Sbjct: 1106 T 1106
[226][TOP]
>UniRef100_Q9NJK2 DNA-directed RNA polymerase (Fragment) n=1 Tax=Polyxenus fasciculatus
RepID=Q9NJK2_9MYRI
Length = 751
Score = 120 bits (301), Expect = 7e-26
Identities = 73/175 (41%), Positives = 99/175 (56%)
Frame = +1
Query: 4 KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
+EW LK DR+ LR +F G++K+ L N++R+IWNA++IF + +DLSP +++ G
Sbjct: 605 REWXTLKLDREVLR-TIFPKGDSKVVLPCNLQRMIWNAQKIFHINVRTPTDLSPLRVIEG 663
Query: 184 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
V L + V+ EDA LS+ A NATLL +
Sbjct: 664 VRDLTKKL-VIVVGEDA--------------------------LSKQANDNATLLINCLI 696
Query: 364 RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPAT 528
R++L +K V E RL+ +AF WLL EIE RFQ A GEMVGA AAQS+GEPAT
Sbjct: 697 RSTLCTKRVAEEFRLSAEAFEWLLGEIETRFQHAQVQPGEMVGALAAQSLGEPAT 751
[227][TOP]
>UniRef100_C7YI77 Predicted protein n=1 Tax=Nectria haematococca mpVI 77-13-4
RepID=C7YI77_NECH7
Length = 1750
Score = 120 bits (301), Expect = 7e-26
Identities = 73/181 (40%), Positives = 102/181 (56%), Gaps = 1/181 (0%)
Frame = +1
Query: 7 EWAQLKKDRDFLRH-EVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
EW L KDR +R K E + L +NI R+I +AKR+F+V+ NDRS+L PS ++
Sbjct: 943 EWEALLKDRRVIRQINKAKMNEEMMQLPLNITRIIESAKRVFNVKANDRSNLRPSDVIPS 1002
Query: 184 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
V+ LL +++ + V+A A NAT+LF+ +
Sbjct: 1003 VQNLLDHMKIVRGTDPISVEADA---------------------------NATILFKGLL 1035
Query: 364 RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
R+ LA K V+ EHRL + AF ++ E++NR+ +A GEMVG AAQSIGEPATQMTLN
Sbjct: 1036 RSRLAFKEVVKEHRLNKLAFDHVIGELQNRWDRAFVSPGEMVGVLAAQSIGEPATQMTLN 1095
Query: 544 T 546
T
Sbjct: 1096 T 1096
[228][TOP]
>UniRef100_C1H3Q4 DNA-directed RNA polymerase n=1 Tax=Paracoccidioides brasiliensis
Pb01 RepID=C1H3Q4_PARBA
Length = 1748
Score = 120 bits (300), Expect = 8e-26
Identities = 75/181 (41%), Positives = 106/181 (58%)
Frame = +1
Query: 4 KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
+EW QL KDR F+R K + + L +N++R++ +AK IF +R+ SDL P++++
Sbjct: 960 EEWEQLLKDRAFMRAAA-KEDDEMMQLPINVQRILESAKTIFRIREGAISDLHPAEVIPQ 1018
Query: 184 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
V LL R V+ D D I+RE AQ +ATLLF+ +
Sbjct: 1019 VRALLDRLVVVRGD-----DVISRE----------------------AQESATLLFKAQL 1051
Query: 364 RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
R+ LA + +++E+ L + AF +L IENRF +A+A GEMVG AAQSIGEPATQMTLN
Sbjct: 1052 RSRLAFRRLVTEYSLNKLAFQHVLGAIENRFSRAMANPGEMVGVLAAQSIGEPATQMTLN 1111
Query: 544 T 546
T
Sbjct: 1112 T 1112
[229][TOP]
>UniRef100_C1GHL1 DNA-directed RNA polymerase n=1 Tax=Paracoccidioides brasiliensis
Pb18 RepID=C1GHL1_PARBD
Length = 1746
Score = 120 bits (300), Expect = 8e-26
Identities = 75/181 (41%), Positives = 106/181 (58%)
Frame = +1
Query: 4 KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
+EW QL KDR F+R K + + L +N++R++ +AK IF +R+ SDL P++++
Sbjct: 954 EEWEQLLKDRAFMRTAA-KEDDEMMQLPINVQRILESAKTIFRIREGAISDLHPAEVIPQ 1012
Query: 184 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
V LL R V+ D D I+RE AQ +ATLLF+ +
Sbjct: 1013 VRALLDRLVVVRGD-----DVISRE----------------------AQESATLLFKAQL 1045
Query: 364 RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
R+ LA + +++E+ L + AF +L IENRF +A+A GEMVG AAQSIGEPATQMTLN
Sbjct: 1046 RSRLAFRRLVTEYSLNKLAFQHVLGAIENRFSRAMANPGEMVGVLAAQSIGEPATQMTLN 1105
Query: 544 T 546
T
Sbjct: 1106 T 1106
[230][TOP]
>UniRef100_C0SE75 DNA-directed RNA polymerase n=1 Tax=Paracoccidioides brasiliensis
Pb03 RepID=C0SE75_PARBP
Length = 2106
Score = 120 bits (300), Expect = 8e-26
Identities = 75/181 (41%), Positives = 106/181 (58%)
Frame = +1
Query: 4 KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
+EW QL KDR F+R K + + L +N++R++ +AK IF +R+ SDL P++++
Sbjct: 954 EEWEQLLKDRAFMRTAA-KEDDEMMQLPINVQRILESAKTIFRIREGAISDLHPAEVIPQ 1012
Query: 184 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
V LL R V+ D D I+RE AQ +ATLLF+ +
Sbjct: 1013 VRALLDRLVVVRGD-----DVISRE----------------------AQESATLLFKAQL 1045
Query: 364 RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
R+ LA + +++E+ L + AF +L IENRF +A+A GEMVG AAQSIGEPATQMTLN
Sbjct: 1046 RSRLAFRRLVTEYSLNKLAFQHVLGAIENRFSRAMANPGEMVGVLAAQSIGEPATQMTLN 1105
Query: 544 T 546
T
Sbjct: 1106 T 1106
[231][TOP]
>UniRef100_B4YT41 DNA-directed RNA polymerase (Fragment) n=1 Tax=Macrogyrus oblongus
RepID=B4YT41_9COLE
Length = 554
Score = 119 bits (299), Expect = 1e-25
Identities = 70/166 (42%), Positives = 98/166 (59%)
Frame = +1
Query: 7 EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
EW QL++DR+ LR ++F GE+K+ L N++R+IWN ++IF + + +DLSP ++++GV
Sbjct: 417 EWEQLRRDREALR-QIFPNGESKVVLPCNLQRMIWNVQKIFHINKRAPTDLSPLRVIQGV 475
Query: 187 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
LL R V+ + ED LS+ A NATLLFQ VR
Sbjct: 476 RELLQRC-VIVAGED--------------------------RLSKQANENATLLFQCLVR 508
Query: 367 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAA 504
++L +K V E RL+ +AF WL+ EIE RFQQA GEMVGA AA
Sbjct: 509 STLCTKCVSEEFRLSTEAFEWLIGEIETRFQQAQCAPGEMVGALAA 554
[232][TOP]
>UniRef100_Q1E2G9 DNA-directed RNA polymerase n=1 Tax=Coccidioides immitis
RepID=Q1E2G9_COCIM
Length = 1750
Score = 119 bits (299), Expect = 1e-25
Identities = 77/181 (42%), Positives = 105/181 (58%)
Frame = +1
Query: 4 KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
+EW QL+KDR FLR V K E + L +N++R++ +AK F +R+ SDL P+ ++
Sbjct: 954 EEWEQLQKDRAFLR-SVAKEDEEMMQLPINVQRILESAKTTFRIREGTISDLHPADVIPQ 1012
Query: 184 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
V+ LL R V+ D D I++E AQ NATLLF+ +
Sbjct: 1013 VQGLLDRLVVVRGD-----DVISKE----------------------AQENATLLFKAQL 1045
Query: 364 RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
R+ LA K ++ E+ L + AF +L IE+RF +A A GEMVG AAQSIGEPATQMTLN
Sbjct: 1046 RSRLAFKRLVVEYSLNKLAFQHVLGAIESRFAKAAANPGEMVGVLAAQSIGEPATQMTLN 1105
Query: 544 T 546
T
Sbjct: 1106 T 1106
[233][TOP]
>UniRef100_C5PAJ4 DNA-directed RNA polymerase n=1 Tax=Coccidioides posadasii C735 delta
SOWgp RepID=C5PAJ4_COCP7
Length = 1746
Score = 119 bits (299), Expect = 1e-25
Identities = 77/181 (42%), Positives = 105/181 (58%)
Frame = +1
Query: 4 KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
+EW QL+KDR FLR V K E + L +N++R++ +AK F +R+ SDL P+ ++
Sbjct: 954 EEWEQLQKDRAFLR-SVAKEDEEMMQLPINVQRILESAKTTFRIREGTISDLHPADVIPQ 1012
Query: 184 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
V+ LL R V+ D D I++E AQ NATLLF+ +
Sbjct: 1013 VQGLLDRLVVVRGD-----DVISKE----------------------AQENATLLFKAQL 1045
Query: 364 RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
R+ LA K ++ E+ L + AF +L IE+RF +A A GEMVG AAQSIGEPATQMTLN
Sbjct: 1046 RSRLAFKRLVVEYSLNKLAFQHVLGAIESRFAKAAANPGEMVGVLAAQSIGEPATQMTLN 1105
Query: 544 T 546
T
Sbjct: 1106 T 1106
[234][TOP]
>UniRef100_C4JY44 DNA-directed RNA polymerase n=1 Tax=Uncinocarpus reesii 1704
RepID=C4JY44_UNCRE
Length = 1747
Score = 119 bits (299), Expect = 1e-25
Identities = 76/181 (41%), Positives = 105/181 (58%)
Frame = +1
Query: 4 KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
+EW QL+KDR FLR K E + L +N++R++ +AK F +R+ SDL P++++
Sbjct: 906 EEWEQLQKDRVFLRSAA-KEDEEMMQLPINVQRILESAKTTFRIREGTISDLHPAEVIPQ 964
Query: 184 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
V+ LL R V+ D D I++E AQ NATLLF+ +
Sbjct: 965 VQALLERLVVVRGD-----DIISKE----------------------AQENATLLFKAQL 997
Query: 364 RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
R+ LA K ++ E+ L + AF +L IE+RF +A A GEMVG AAQSIGEPATQMTLN
Sbjct: 998 RSRLAFKRLVVEYSLNKLAFQHVLGAIESRFAKAAANPGEMVGVLAAQSIGEPATQMTLN 1057
Query: 544 T 546
T
Sbjct: 1058 T 1058
[235][TOP]
>UniRef100_Q1L5Y6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Solanum lycopersicum
RepID=Q1L5Y6_SOLLC
Length = 773
Score = 118 bits (296), Expect = 2e-25
Identities = 72/174 (41%), Positives = 99/174 (56%)
Frame = +1
Query: 7 EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
E +L+ DR L E+ TG+ PL VNI+RL+ NA++ F + SD+ P +IV V
Sbjct: 627 EVQKLEADRHQLGTEIAVTGDNSWPLPVNIQRLVLNAQKTFKIDFRRPSDMHPMEIVEAV 686
Query: 187 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
+ L R +V+ D+ LS AQ NATL F + +R
Sbjct: 687 DKLQERLKVVPGDD---------------------------YLSMEAQKNATLFFNILLR 719
Query: 367 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPAT 528
++LASK VL E+RL+R+AF W++ EIE+RF Q+L GEM+G AAQSIGEPAT
Sbjct: 720 SALASKRVLKEYRLSREAFEWVVGEIESRFLQSLVAPGEMIGCVAAQSIGEPAT 773
[236][TOP]
>UniRef100_Q2N108 DNA-directed RNA polymerase II largest subunit (Fragment) n=1
Tax=Aphrocallistes vastus RepID=Q2N108_9METZ
Length = 254
Score = 118 bits (296), Expect = 2e-25
Identities = 69/172 (40%), Positives = 99/172 (57%)
Frame = +1
Query: 4 KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
+E+A+L DR LR E+FK G +K+ L N+ R+IWNA++ F + + SDL+P K++ G
Sbjct: 111 EEFARLHDDRMILR-EIFKDGNSKVVLPCNLSRMIWNAQKTFKINTRNNSDLNPLKVIEG 169
Query: 184 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
VE L + V+ ED+ +S+ AQ NATLL +H+
Sbjct: 170 VEELCKKL-VIVDGEDS--------------------------ISKEAQYNATLLINIHL 202
Query: 364 RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGE 519
R++LA K V+ EH L+ +AF WLL EIE R + GEMVGA +AQS+GE
Sbjct: 203 RSTLACKRVMEEHHLSSQAFDWLLGEIETRXNLSKVQPGEMVGALSAQSLGE 254
[237][TOP]
>UniRef100_Q2PYS3 DNA-directed RNA polymerase (Fragment) n=1 Tax=Cladochytrium
replicatum RepID=Q2PYS3_9FUNG
Length = 981
Score = 118 bits (296), Expect = 2e-25
Identities = 73/170 (42%), Positives = 100/170 (58%), Gaps = 1/170 (0%)
Frame = +1
Query: 7 EWAQLKKDRDFLRHEVFKTGEA-KLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
E+ QL +DR LR E+F + LPL VN++R+IW A+++FD R+ +SDL P I++
Sbjct: 841 EYDQLYEDRRVLREEIFAAEHSFSLPLPVNLKRVIWKAQKLFDRRK--QSDLHPRHIIKS 898
Query: 184 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
V+ LL RT V+ + ELS AQ NATLLFQ+ V
Sbjct: 899 VQELLERTVVIRGKD---------------------------ELSVEAQANATLLFQILV 931
Query: 364 RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSI 513
R++LA++ VL E RL R+AF W++ EI++RF Q L GEMVG AAQSI
Sbjct: 932 RSTLATRRVLEEFRLDRRAFDWIIGEIDSRFNQTLVHPGEMVGTIAAQSI 981
[238][TOP]
>UniRef100_A1YIC4 DNA-directed RNA polymerase (Fragment) n=1 Tax=Chytriomyces hyalinus
RepID=A1YIC4_9FUNG
Length = 1003
Score = 118 bits (296), Expect = 2e-25
Identities = 69/174 (39%), Positives = 102/174 (58%)
Frame = +1
Query: 7 EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
E+ L + R LR +VF +G+++ PL VN++RLI NA R F + + DL+P+ +++GV
Sbjct: 857 EFKYLAEARRILREDVFPSGDSRWPLPVNLKRLIANATRSFHIDRRKPVDLNPTVVIQGV 916
Query: 187 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
++LL + V+ + LS AQ NATLLFQ+ ++
Sbjct: 917 QMLLDKLVVVRGYDT---------------------------LSILAQQNATLLFQILLK 949
Query: 367 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPAT 528
++L+S+ V+ E++L AF WLL EI+ RF QA+ GEMVG AAQSIGEPAT
Sbjct: 950 STLSSRKVIDEYKLNSHAFEWLLGEIDQRFNQAIVHPGEMVGTIAAQSIGEPAT 1003
[239][TOP]
>UniRef100_B7SNX4 DNA-directed RNA polymerase (Fragment) n=1 Tax=Pisum sativum
RepID=B7SNX4_PEA
Length = 1010
Score = 118 bits (295), Expect = 3e-25
Identities = 70/169 (41%), Positives = 98/169 (57%)
Frame = +1
Query: 7 EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
E +L DR L E+ TG++ LPL VN++RLIWNA++ F V SD+ P +IV +
Sbjct: 869 EVQKLDADRFQLATEIATTGDSSLPLPVNLKRLIWNAQKTFKVDFRRPSDMHPMEIVEAI 928
Query: 187 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
+ L R RV+ D+ LS+ AQ NATLLF + +R
Sbjct: 929 DKLQERLRVVPGDD---------------------------LLSQEAQKNATLLFNILLR 961
Query: 367 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSI 513
++ ASK VL E+RL+R+AF W++ EIE+RF Q+L +GEM+G AAQSI
Sbjct: 962 STFASKRVLEEYRLSREAFEWVVGEIESRFLQSLVASGEMIGCVAAQSI 1010
[240][TOP]
>UniRef100_Q9HGZ5 DNA-directed RNA polymerase n=2 Tax=Aspergillus RepID=Q9HGZ5_ASPOR
Length = 1748
Score = 118 bits (295), Expect = 3e-25
Identities = 71/181 (39%), Positives = 105/181 (58%)
Frame = +1
Query: 4 KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
+EW QL K R FLR V K E + L +N++R++ A+ F +R+ SDL P++++
Sbjct: 951 EEWEQLLKARAFLR-TVAKEDEEMMQLPINVQRILEMARTTFRIREGTISDLHPAEVIPQ 1009
Query: 184 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
V+ LL R ++ D+ +S+ AQ NATLLF+ +
Sbjct: 1010 VQALLDRLLIVRGDDP---------------------------ISQEAQENATLLFKAQL 1042
Query: 364 RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
R+ LA + +++E+ + + AF ++ IE+RF +A APAGEMVG AAQSIGEPATQMTLN
Sbjct: 1043 RSRLAFRRLVTEYSMNKLAFQHVIGAIESRFAKANAPAGEMVGVLAAQSIGEPATQMTLN 1102
Query: 544 T 546
T
Sbjct: 1103 T 1103
[241][TOP]
>UniRef100_A1YIC6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Neocallimastix
frontalis RepID=A1YIC6_NEOFR
Length = 1004
Score = 118 bits (295), Expect = 3e-25
Identities = 68/175 (38%), Positives = 95/175 (54%)
Frame = +1
Query: 4 KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
+E+ L++DR R +FK G++ PL VN+ RLIWNA+ IF + + SDL P I
Sbjct: 857 EEYKSLQEDRKLFREFIFKNGDSSWPLPVNVRRLIWNAQNIFSINKRKESDLHPLYICEK 916
Query: 184 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
+ LL R V+ D+ +LS+ AQ+N+T+ F +
Sbjct: 917 RDELLKRLVVVRGDD---------------------------KLSKEAQINSTINFFALI 949
Query: 364 RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPAT 528
+ L++K +L + L + AF WL+ EIE RF QAL GEMVG AAQSIGEPAT
Sbjct: 950 KTCLSTKRILEYYHLNKAAFDWLIGEIEVRFNQALVQPGEMVGTIAAQSIGEPAT 1004
[242][TOP]
>UniRef100_A1YIB9 DNA-directed RNA polymerase (Fragment) n=1 Tax=Allomyces macrogynus
RepID=A1YIB9_ALLMA
Length = 1008
Score = 118 bits (295), Expect = 3e-25
Identities = 71/175 (40%), Positives = 101/175 (57%)
Frame = +1
Query: 4 KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
+E+ QL++DR+ LRH +F G+A+ PL NI+R+IWNA+ +F + + S+L P +V
Sbjct: 862 QEYRQLEEDRERLRH-IFPRGDARWPLPGNIQRIIWNAQNLFKIDKTKPSNLHPEYVVNE 920
Query: 184 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
V L + V+ + V+A Q NATLL Q+ V
Sbjct: 921 VRKLCDKLMVIPGTDKISVEA---------------------------QRNATLLSQILV 953
Query: 364 RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPAT 528
R++LA+K V+ E RL ++AF ++L EI RF Q+L AGEMVG AAQSIGEPAT
Sbjct: 954 RSTLATKRVIEEFRLDKRAFDYVLGEIATRFAQSLVHAGEMVGIIAAQSIGEPAT 1008
[243][TOP]
>UniRef100_Q0D054 DNA-directed RNA polymerase n=1 Tax=Aspergillus terreus NIH2624
RepID=Q0D054_ASPTN
Length = 1742
Score = 117 bits (294), Expect = 4e-25
Identities = 71/181 (39%), Positives = 103/181 (56%)
Frame = +1
Query: 4 KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
+EW QL KDR FLR V K E + L +N++R++ A+ F +R+ SDL P++++
Sbjct: 952 EEWEQLLKDRAFLR-TVAKEDEEMMQLPINVQRILETARSTFRIREGTISDLHPAEVIPQ 1010
Query: 184 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
V+ LL R +++ D+ V+A Q NATLLF+ +
Sbjct: 1011 VQSLLDRLKIVRGDDIISVEA---------------------------QENATLLFKAQL 1043
Query: 364 RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
R+ LA + +++E+ + + AF +L IE RF +A A GEMVG AAQSIGEPATQMTLN
Sbjct: 1044 RSRLAFRRLVTEYSMNKLAFQHVLGAIETRFAKAAASPGEMVGVLAAQSIGEPATQMTLN 1103
Query: 544 T 546
T
Sbjct: 1104 T 1104
[244][TOP]
>UniRef100_C5FCL2 DNA-directed RNA polymerase n=1 Tax=Microsporum canis CBS 113480
RepID=C5FCL2_NANOT
Length = 1748
Score = 117 bits (293), Expect = 6e-25
Identities = 76/181 (41%), Positives = 101/181 (55%)
Frame = +1
Query: 4 KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
+EW QL KDR FLR V K + + L +NI+R++ +AK F +R SDL P+++V
Sbjct: 953 EEWEQLLKDRAFLR-TVVKEDDEMMQLPINIQRILESAKTTFRIRDGTISDLHPAEVVPQ 1011
Query: 184 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
V LL R V+ D+ LS AQ NATLLF+ +
Sbjct: 1012 VRQLLDRLLVVRGDDP---------------------------LSREAQENATLLFKAQL 1044
Query: 364 RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
R+ LA + ++ E+ L + AF +L IE+RF +A A GEMVG AAQSIGEPATQMTLN
Sbjct: 1045 RSRLAFRRLVVEYSLNKLAFQHVLGAIESRFGKAAANPGEMVGVLAAQSIGEPATQMTLN 1104
Query: 544 T 546
T
Sbjct: 1105 T 1105
[245][TOP]
>UniRef100_A1CNZ4 DNA-directed RNA polymerase n=1 Tax=Aspergillus clavatus
RepID=A1CNZ4_ASPCL
Length = 1765
Score = 117 bits (293), Expect = 6e-25
Identities = 72/181 (39%), Positives = 103/181 (56%)
Frame = +1
Query: 4 KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
+EW QL KDR FLR V K + + L +N++R++ A+ F +R+ SDL P+++V
Sbjct: 953 EEWEQLLKDRAFLR-SVVKEDDEMMQLPINVQRILETARSTFRIREGAISDLHPAEVVPQ 1011
Query: 184 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
V+ LL R V+ D+ +S AQ NATLLF+ +
Sbjct: 1012 VQSLLDRLLVVRGDDP---------------------------ISHEAQENATLLFKAQL 1044
Query: 364 RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
R+ LA + +++E+ + + AF +L IE+RF +A A GEMVG AAQSIGEPATQMTLN
Sbjct: 1045 RSRLAFRRLVTEYSMNKLAFQHVLGAIESRFAKAAASPGEMVGVLAAQSIGEPATQMTLN 1104
Query: 544 T 546
T
Sbjct: 1105 T 1105
[246][TOP]
>UniRef100_UPI000023F34A hypothetical protein FG00916.1 n=1 Tax=Gibberella zeae PH-1
RepID=UPI000023F34A
Length = 1758
Score = 115 bits (289), Expect = 2e-24
Identities = 71/182 (39%), Positives = 103/182 (56%), Gaps = 1/182 (0%)
Frame = +1
Query: 4 KEWAQLKKDRDFLRH-EVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVR 180
+EW +L DR +R K E + L +NI R+I +AKR+F+V+ NDRS+L PS ++
Sbjct: 945 EEWERLVHDRTRIRAINRAKGNEEMMQLPLNITRIIESAKRVFNVKANDRSNLRPSDVIP 1004
Query: 181 GVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVH 360
V+ +L +++ + ++A A NA++LF+
Sbjct: 1005 AVQNMLDNMKIVRGTDPISLEADA---------------------------NASILFKGL 1037
Query: 361 VRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTL 540
+R+ LA K V+ EHRL R AF +L E++NR+ +A GEMVG AAQSIGEPATQMTL
Sbjct: 1038 LRSRLAFKEVVKEHRLNRLAFDHILGELQNRWDRAFVNPGEMVGVLAAQSIGEPATQMTL 1097
Query: 541 NT 546
NT
Sbjct: 1098 NT 1099
[247][TOP]
>UniRef100_Q2TUN5 DNA-directed RNA polymerase (Fragment) n=1 Tax=Ephedra viridis
RepID=Q2TUN5_EPHVI
Length = 1013
Score = 115 bits (289), Expect = 2e-24
Identities = 69/169 (40%), Positives = 94/169 (55%)
Frame = +1
Query: 7 EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
E+ +L+ DR L E+ TGE PL VN++RLIWNA++IF V SD+ P +IV +
Sbjct: 872 EYKKLQLDRRQLGMEIAPTGENSWPLPVNLKRLIWNAQKIFKVDPRKTSDMQPLEIVDTI 931
Query: 187 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
+ L R +V+ D+ LS AQ NATL F + +R
Sbjct: 932 DKLQERLKVVPGDDP---------------------------LSFEAQKNATLFFNILLR 964
Query: 367 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSI 513
+ ASK VL E+ LTR+AF W++ E+ENRF Q+L GEM+G AAQSI
Sbjct: 965 SVFASKRVLKEYHLTREAFDWVIGEVENRFLQSLVAPGEMIGCVAAQSI 1013
[248][TOP]
>UniRef100_C1MI48 DNA-directed RNA polymerase n=1 Tax=Micromonas pusilla CCMP1545
RepID=C1MI48_9CHLO
Length = 1694
Score = 115 bits (288), Expect = 2e-24
Identities = 70/186 (37%), Positives = 107/186 (57%), Gaps = 6/186 (3%)
Frame = +1
Query: 7 EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQN------DRSDLSPS 168
EW QLK DR L H+V TG+ + L VN++R++WNA++ + + ++ +R +L
Sbjct: 930 EWEQLKLDRAEL-HKVMTTGDPSVHLPVNLKRIVWNAQKNYGLVKDTSAPGRERDELQAV 988
Query: 169 KIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLL 348
++ V +L+ V+ P G ELS AQ N+T+L
Sbjct: 989 NVIESVRSMLNGLTVV-----------------PGGD----------ELSLEAQRNSTIL 1021
Query: 349 FQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPAT 528
F VR++L++K V+ + +L+ AF W++ E+E+RF+ ALAP G+ +G AAQSIGEPAT
Sbjct: 1022 FFALVRSTLSAKRVMKDFKLSPAAFNWVVGEVESRFKMALAPPGDGIGTVAAQSIGEPAT 1081
Query: 529 QMTLNT 546
QMTLNT
Sbjct: 1082 QMTLNT 1087
[249][TOP]
>UniRef100_Q6FQS9 DNA-directed RNA polymerase n=1 Tax=Candida glabrata
RepID=Q6FQS9_CANGA
Length = 1715
Score = 115 bits (288), Expect = 2e-24
Identities = 74/181 (40%), Positives = 101/181 (55%)
Frame = +1
Query: 4 KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
+E+ QL KDR FLR +F GE+ PL VNI R+I NA++ F + SDL+ +I+
Sbjct: 931 EEYKQLVKDRRFLR-TIFSDGESSWPLPVNIRRIIQNAQQTFRIDHTKPSDLTIPEIINS 989
Query: 184 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
V L R VL S E+ + AQ +A LF +
Sbjct: 990 VRDLQDRLLVLRSK---------------------------SEIIKKAQDDAVTLFCCLL 1022
Query: 364 RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
R+ LA++ VL E+RLT++AF W+L +E +F +++ GEMVG AAQSIGEPATQMTLN
Sbjct: 1023 RSRLATRRVLQEYRLTKEAFEWVLNNVEAQFLRSIVHPGEMVGVLAAQSIGEPATQMTLN 1082
Query: 544 T 546
T
Sbjct: 1083 T 1083
[250][TOP]
>UniRef100_Q2PYS6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Polychytrium
aggregatum RepID=Q2PYS6_9FUNG
Length = 1016
Score = 115 bits (288), Expect = 2e-24
Identities = 71/170 (41%), Positives = 95/170 (55%)
Frame = +1
Query: 4 KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
+E+ QL+KDR+ LR +FK G + PL VN++RLIWNA+ F+V +DL P I
Sbjct: 874 QEFEQLRKDRETLRWTIFKDGSSSWPLPVNLKRLIWNAQNQFEVGPRKPTDLHPLHITES 933
Query: 184 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
VE LL + V+ ++ V+A Q NATLLFQ+ V
Sbjct: 934 VEQLLDKLVVVRGNDPLSVEA---------------------------QKNATLLFQILV 966
Query: 364 RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSI 513
R++LA++ VL E L K+F L+ EIE RF QA+A GEMVG AAQSI
Sbjct: 967 RSTLATRRVLEEFHLNSKSFQHLIGEIEMRFNQAIAHPGEMVGTIAAQSI 1016