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[1][TOP]
>UniRef100_B1XPV3 Ribonuclease II n=1 Tax=Synechococcus sp. PCC 7002
RepID=B1XPV3_SYNP2
Length = 670
Score = 110 bits (274), Expect = 7e-23
Identities = 64/166 (38%), Positives = 94/166 (56%), Gaps = 3/166 (1%)
Frame = +2
Query: 29 YPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSWEA- 205
YP FS ++ + ++ LSA P ++ G R DL HL +Y +D ST E+DD +S E
Sbjct: 236 YPRKFSQKVLDVSHARLSASPGDTDEGN---RLDLTHLKTYTIDDESTSEIDDGLSIETL 292
Query: 206 --DTGRLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLDASN 379
++W+HIAD + L PG+ L EA RRS +LYLPT I+M P ELA +SL
Sbjct: 293 EDGLHKVWIHIADPTRLLSPGDELDLEARRRSTSLYLPTGMISMFPEELATGPMSL---- 348
Query: 380 GHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTYE 517
+ ALSFG + E+G++ D ++ PS ++ +RLTY+
Sbjct: 349 ------RQGQVCAALSFGVLLTENGAIADYEITPSWVKPTYRLTYD 388
[2][TOP]
>UniRef100_B8HWY4 Exoribonuclease II n=1 Tax=Cyanothece sp. PCC 7425
RepID=B8HWY4_CYAP4
Length = 671
Score = 108 bits (269), Expect = 3e-22
Identities = 72/175 (41%), Positives = 97/175 (55%), Gaps = 3/175 (1%)
Frame = +2
Query: 2 SLELRASHFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEV 181
+L LR S P F+ + EAA+ L++ P+ + +A R +L L Y +D ST E+
Sbjct: 230 NLFLRRSQI-PLQFAARVLEAAHHCLTSPPVDVD---AAHRVNLTGLKVYTIDDESTREI 285
Query: 182 DDAMSWE---ADTGRLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELAR 352
DD +S E RLW+HIAD S WL PG+ L EA RRS T+YLPT I M P ELA
Sbjct: 286 DDGLSLEFLPEGQQRLWIHIADPSRWLTPGDELDLEARRRSTTIYLPTGMIPMFPPELAT 345
Query: 353 DGLSLDASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTYE 517
+SL + ALSFG T+ + G++ D Q+ PS I+ +RLTYE
Sbjct: 346 GPMSL----------TQGQVCCALSFGITLDKTGAVVDYQLAPSQIKPTYRLTYE 390
[3][TOP]
>UniRef100_B7K7A9 Exoribonuclease II n=1 Tax=Cyanothece sp. PCC 7424
RepID=B7K7A9_CYAP7
Length = 676
Score = 107 bits (267), Expect = 5e-22
Identities = 72/175 (41%), Positives = 93/175 (53%), Gaps = 3/175 (1%)
Frame = +2
Query: 2 SLELRASHFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEV 181
+L LR S YP FS + E A L + P P R DL HL Y +D ST E+
Sbjct: 233 NLFLRRSS-YPVQFSKRVLEVAKHCLESPP----PDPDVVRLDLTHLKIYTIDDESTKEI 287
Query: 182 DDAMSWEA---DTGRLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELAR 352
DD +S E T RLW+HIAD S + PG+ L EA +RS +LYLPT I+M P ELA
Sbjct: 288 DDGLSVEQLENGTTRLWIHIADPSRLVSPGDELDLEARKRSTSLYLPTGMISMFPPELAT 347
Query: 353 DGLSLDASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTYE 517
+SL + ALSFG + EDGS+ D + SL++ +RLTY+
Sbjct: 348 GPMSL----------VQGQICPALSFGVILKEDGSVEDYIIHASLVKPTYRLTYD 392
[4][TOP]
>UniRef100_B4W5F1 RNB-like protein n=1 Tax=Microcoleus chthonoplastes PCC 7420
RepID=B4W5F1_9CYAN
Length = 671
Score = 107 bits (267), Expect = 5e-22
Identities = 74/175 (42%), Positives = 94/175 (53%), Gaps = 3/175 (1%)
Frame = +2
Query: 2 SLELRASHFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEV 181
+L LR S YP F E+ + L + P P R DL HL Y VD ST E+
Sbjct: 228 NLFLRRSS-YPVHFRREVLDLVQHYLDSPP----PDPDQDRLDLTHLKVYTVDDESTSEI 282
Query: 182 DDAMSWEA-DTG--RLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELAR 352
DD +S E D G RLW+HIAD + ++P + L EA RRS TLYLPT I+M P ELA
Sbjct: 283 DDGLSLEQLDDGKERLWIHIADPTRLVRPDDELDREARRRSTTLYLPTGMISMFPAELAT 342
Query: 353 DGLSLDASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTYE 517
+SL E LSFG + EDGS+ + ++ PSLI+ +RLTYE
Sbjct: 343 GPMSL----------VEGQVCPTLSFGVILDEDGSVQEYKIHPSLIKPTYRLTYE 387
[5][TOP]
>UniRef100_Q31P65 Exoribonuclease II n=2 Tax=Synechococcus elongatus
RepID=Q31P65_SYNE7
Length = 670
Score = 105 bits (261), Expect = 2e-21
Identities = 69/175 (39%), Positives = 94/175 (53%), Gaps = 3/175 (1%)
Frame = +2
Query: 2 SLELRASHFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEV 181
+L LR S P TF + + L A P+ + R DL HL Y +D ST E+
Sbjct: 230 NLFLRRSQV-PTTFPVAVMDVVQTCLDAPPVDRDR-----RQDLSHLKVYTIDDESTREI 283
Query: 182 DDAMSWEA-DTGRL--WVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELAR 352
DD +S + GRL WVH+AD + ++PG+ L EA RRS T+YLPT + M PLELA
Sbjct: 284 DDGLSCQRLSDGRLQLWVHVADPTRLIEPGDALDLEARRRSTTIYLPTGMVPMFPLELAA 343
Query: 353 DGLSLDASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTYE 517
+SL + A ALSFG + E G++ +++PS IR +RLTYE
Sbjct: 344 GPMSL----------VQGQACCALSFGICLDEQGAIASYEIVPSQIRPTYRLTYE 388
[6][TOP]
>UniRef100_Q2JIR4 Exoribonuclease, VacB/RNB family n=1 Tax=Synechococcus sp.
JA-2-3B'a(2-13) RepID=Q2JIR4_SYNJB
Length = 686
Score = 102 bits (255), Expect = 1e-20
Identities = 63/165 (38%), Positives = 86/165 (52%), Gaps = 3/165 (1%)
Frame = +2
Query: 32 PPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMS---WE 202
P F ++ LLS P R DL HL +Y +D AST ++DDA+S W
Sbjct: 256 PTQFPKAVERYTQALLSQPP---SFWDPHLRQDLTHLHTYTIDDASTRDIDDALSVEFWS 312
Query: 203 ADTGRLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLDASNG 382
D +LW+HIAD S W++ G+PL EA +R ++YLP I M P EL+ +SL
Sbjct: 313 DDAVKLWIHIADPSCWVQWGDPLDLEARKRGTSVYLPERVIPMFPPELSTGPMSL----- 367
Query: 383 HAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTYE 517
V E ALSFG + DG + D ++ S I+ +RLTYE
Sbjct: 368 ---VQGEVRP--ALSFGILLGSDGQIRDSEICLSQIKVTYRLTYE 407
[7][TOP]
>UniRef100_B0JUR2 Ribonuclease II n=1 Tax=Microcystis aeruginosa NIES-843
RepID=B0JUR2_MICAN
Length = 671
Score = 102 bits (253), Expect = 2e-20
Identities = 72/175 (41%), Positives = 95/175 (54%), Gaps = 3/175 (1%)
Frame = +2
Query: 2 SLELRASHFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEV 181
+L LR S YP FS ++ + A L P ++V R DL H Y +D ST E+
Sbjct: 228 NLFLRRSS-YPVQFSKKVLDVARLNLLNPPADADVNN---RLDLTHQKIYTIDDESTEEI 283
Query: 182 DDAMSWE--ADTG-RLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELAR 352
DD +S E AD G RLW+HIAD S + P + L EA RRS +LYLPT + M PLELA
Sbjct: 284 DDGLSVEMLADGGHRLWIHIADPSRLVLPDDELDLEARRRSTSLYLPTGMVPMFPLELAA 343
Query: 353 DGLSLDASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTYE 517
+SL + ALSFG + E G++ D ++ PS I+ +RLTYE
Sbjct: 344 GPMSL----------VQGKLCPALSFGVILDETGAIADYRIHPSTIKPTYRLTYE 388
[8][TOP]
>UniRef100_A8YM56 Similar to Q4BZP1_CROWT Exoribonuclease II n=1 Tax=Microcystis
aeruginosa PCC 7806 RepID=A8YM56_MICAE
Length = 671
Score = 102 bits (253), Expect = 2e-20
Identities = 72/175 (41%), Positives = 95/175 (54%), Gaps = 3/175 (1%)
Frame = +2
Query: 2 SLELRASHFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEV 181
+L LR S YP FS ++ + A L P ++V R DL H Y +D ST E+
Sbjct: 228 NLFLRRSS-YPVQFSKKVLDVARLNLLNPPADADVNN---RLDLTHQKIYTIDDESTEEI 283
Query: 182 DDAMSWE--ADTG-RLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELAR 352
DD +S E AD G RLW+HIAD S + P + L EA RRS +LYLPT + M PLELA
Sbjct: 284 DDGLSVEILADGGHRLWIHIADPSRLVLPDDELDLEARRRSTSLYLPTGMVPMFPLELAA 343
Query: 353 DGLSLDASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTYE 517
+SL + ALSFG + E G++ D ++ PS I+ +RLTYE
Sbjct: 344 GPMSL----------VQGKLCPALSFGVILDETGAIADYRIHPSTIKPTYRLTYE 388
[9][TOP]
>UniRef100_Q2JV50 Exoribonuclease, VacB/RNB family n=1 Tax=Synechococcus sp. JA-3-3Ab
RepID=Q2JV50_SYNJA
Length = 683
Score = 100 bits (250), Expect = 4e-20
Identities = 63/165 (38%), Positives = 91/165 (55%), Gaps = 3/165 (1%)
Frame = +2
Query: 32 PPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSWEADT 211
P F E++ A LL P ++ R DL HL +Y +D AST ++DDA+S E ++
Sbjct: 256 PTQFPKEVERYAQTLLGGPPPFLDL---PLRRDLTHLHTYTIDDASTRDIDDALSVEFES 312
Query: 212 G---RLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLDASNG 382
+LW+HIAD S W++ G+PL EA +R ++YLP I M P EL+ +SL
Sbjct: 313 DDEVKLWIHIADPSCWVQWGDPLDLEARKRGTSVYLPERVIPMFPSELSTGPMSL----- 367
Query: 383 HAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTYE 517
V E ALSFG + DG++ D ++ S IR +RLTY+
Sbjct: 368 ---VQGEVRP--ALSFGIRLGSDGAVRDYEICLSQIRVNYRLTYD 407
[10][TOP]
>UniRef100_P73177 Uncharacterized ribonuclease sll1290 n=1 Tax=Synechocystis sp. PCC
6803 RepID=RN2H_SYNY3
Length = 666
Score = 100 bits (249), Expect = 6e-20
Identities = 65/166 (39%), Positives = 91/166 (54%), Gaps = 3/166 (1%)
Frame = +2
Query: 29 YPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSWE-- 202
YP F ++ + A+ L+ P P R DL L +Y +D ST E+DD +S E
Sbjct: 236 YPNQFPAKVSDVAHAYLTNPP----PDPDQERFDLTTLKTYTIDDESTSEIDDGLSVETL 291
Query: 203 ADTG-RLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLDASN 379
AD G RLW+H+AD + L P + L EA +RS +LYLPT I+M P ELA +SL
Sbjct: 292 ADGGHRLWIHVADPTRLLSPNDELDLEARKRSTSLYLPTGMISMFPPELATGPMSL---- 347
Query: 380 GHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTYE 517
+ +ALSFG T+ E G++ D + PS ++ +RLTYE
Sbjct: 348 ------LQGQRCVALSFGVTLDEVGAVRDFTIAPSWVKPTYRLTYE 387
[11][TOP]
>UniRef100_B4WFI8 RNB-like protein n=1 Tax=Synechococcus sp. PCC 7335
RepID=B4WFI8_9SYNE
Length = 681
Score = 99.8 bits (247), Expect = 1e-19
Identities = 63/164 (38%), Positives = 84/164 (51%), Gaps = 3/164 (1%)
Frame = +2
Query: 35 PTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSWEA--- 205
PT PE A+ + P A E R DL HL Y +D ST E+DD +S E
Sbjct: 239 PTQFPEEVSASVAQIIESPPAEE----GDRVDLTHLKVYTIDDESTQEIDDGLSCETLAD 294
Query: 206 DTGRLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLDASNGH 385
+LW+HIAD + W+ L TEA RR T+YLPT I M P ELA +SL
Sbjct: 295 GRQKLWIHIADPTYWISLNGILDTEARRRCTTVYLPTGVIPMFPFELAAGPMSL------ 348
Query: 386 AHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTYE 517
+ ALSF +AEDGS+ + + PS+++ +RLTY+
Sbjct: 349 ----VQGQICNALSFSVLLAEDGSVAEYSIQPSVVKPTYRLTYD 388
[12][TOP]
>UniRef100_Q8YNW1 Ribonuclease II n=1 Tax=Nostoc sp. PCC 7120 RepID=Q8YNW1_ANASP
Length = 686
Score = 99.4 bits (246), Expect = 1e-19
Identities = 69/175 (39%), Positives = 88/175 (50%), Gaps = 3/175 (1%)
Frame = +2
Query: 2 SLELRASHFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEV 181
+L LR S P F ++ E A L P + R DL HL Y VD ST E+
Sbjct: 244 NLFLRRSSI-PVQFPSKVLEVAQQRLDFPPTDLDTN----RLDLTHLKVYTVDDESTTEI 298
Query: 182 DDAMSWEA---DTGRLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELAR 352
DD +SWE D RLWVHIAD + +L P + L EA +R T+YLPT I M P LA
Sbjct: 299 DDGLSWEKLPDDRERLWVHIADPTRYLAPEDDLDLEARKRGSTVYLPTGMIPMFPEVLAT 358
Query: 353 DGLSLDASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTYE 517
+SL + ALSFG + G++ D + PSLI+ +RLTYE
Sbjct: 359 GPMSL----------VQGRVCCALSFGVVLDGTGAVQDFTIHPSLIKPTYRLTYE 403
[13][TOP]
>UniRef100_Q3MDJ0 Ribonuclease II n=1 Tax=Anabaena variabilis ATCC 29413
RepID=Q3MDJ0_ANAVT
Length = 686
Score = 99.4 bits (246), Expect = 1e-19
Identities = 69/175 (39%), Positives = 88/175 (50%), Gaps = 3/175 (1%)
Frame = +2
Query: 2 SLELRASHFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEV 181
+L LR S P F ++ E A L P + R DL HL Y VD ST E+
Sbjct: 244 NLFLRRSSI-PVQFPSKVLEVAQQRLDFPPTDLDTN----RLDLTHLKVYTVDDESTTEI 298
Query: 182 DDAMSWEA---DTGRLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELAR 352
DD +SWE RLWVHIAD + +L P + L EA +R T+YLPT I M P LA
Sbjct: 299 DDGLSWEKLPDSRERLWVHIADPTRYLAPEDDLDLEARKRGSTVYLPTGMIPMFPEILAT 358
Query: 353 DGLSLDASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTYE 517
+SL + ALSFG + E G++ D + PSLI+ +RLTYE
Sbjct: 359 GPMSL----------VQGRVCCALSFGVVLDETGAVEDFTIHPSLIKPTYRLTYE 403
[14][TOP]
>UniRef100_A0ZC94 Ribonuclease II n=1 Tax=Nodularia spumigena CCY9414
RepID=A0ZC94_NODSP
Length = 686
Score = 99.0 bits (245), Expect = 2e-19
Identities = 63/165 (38%), Positives = 81/165 (49%), Gaps = 3/165 (1%)
Frame = +2
Query: 32 PPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSWEA-- 205
P F ++ E A L P + R DL HL Y +D ST E+DD +SWE
Sbjct: 253 PVQFPSKVLEVAQQRLDFPPTDLDTN----RLDLSHLKVYTIDDESTTEIDDGLSWEILP 308
Query: 206 -DTGRLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLDASNG 382
RLWVHIAD + WL P + L EA +R T+YLPT + M P LA +SL
Sbjct: 309 DGRERLWVHIADPTRWLVPEDELDLEARKRGSTVYLPTGMVPMFPELLATGPMSL----- 363
Query: 383 HAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTYE 517
+ ALSFG + E G + D + PS I+ +RLTYE
Sbjct: 364 -----VQGRISCALSFGVVLDESGGVEDYTIHPSFIKPTYRLTYE 403
[15][TOP]
>UniRef100_Q7NK64 Ribonuclease II n=1 Tax=Gloeobacter violaceus RepID=Q7NK64_GLOVI
Length = 663
Score = 98.6 bits (244), Expect = 2e-19
Identities = 66/175 (37%), Positives = 92/175 (52%), Gaps = 3/175 (1%)
Frame = +2
Query: 2 SLELRASHFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEV 181
++ LR S P F + E A LL P A R D L Y +D ST E+
Sbjct: 230 NIHLRRSGI-PVHFGTPVSEYARKLLENPP-----ADPASRRDFGRLAIYTIDDESTREI 283
Query: 182 DDAMSWEA-DTGR--LWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELAR 352
DD +S E + GR LW+HIAD + W++PG+PL EA RR+ ++YLPT I M P ELA
Sbjct: 284 DDGLSLEMLEDGREKLWIHIADPTRWVQPGDPLEAEARRRATSVYLPTGAIPMFPPELAT 343
Query: 353 DGLSLDASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTYE 517
+SL + ALSFG + DG++ + +V P+L+R + +TYE
Sbjct: 344 GPMSLLPGQLNC----------ALSFGAIIGPDGAVENFEVTPALVRTVYPVTYE 388
[16][TOP]
>UniRef100_Q10Y88 Exoribonuclease II n=1 Tax=Trichodesmium erythraeum IMS101
RepID=Q10Y88_TRIEI
Length = 674
Score = 98.6 bits (244), Expect = 2e-19
Identities = 70/175 (40%), Positives = 92/175 (52%), Gaps = 3/175 (1%)
Frame = +2
Query: 2 SLELRASHFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEV 181
+L LR S P FS ++ E A L + P P R DL HL Y +D ST E+
Sbjct: 230 NLYLRRSQI-PKCFSTKVLEVAKSCLQSLP----PDPETNRLDLTHLKVYTIDDESTQEI 284
Query: 182 DDAMSWE-ADTG--RLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELAR 352
DD +S E + G R+WVHIAD + L PG+ L EA RR+ TLYLPT + M P ELA
Sbjct: 285 DDGLSIEFLEDGQHRIWVHIADPTRLLIPGDELDLEARRRTTTLYLPTGMVPMFPPELAT 344
Query: 353 DGLSLDASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTYE 517
+SL + ALSFG + E G++ D + SLI+ +RLTY+
Sbjct: 345 GPMSL----------IQGQVCRALSFGILLDESGAVIDYIIHASLIKPTYRLTYD 389
[17][TOP]
>UniRef100_B1WYB0 Ribonuclease II n=1 Tax=Cyanothece sp. ATCC 51142
RepID=B1WYB0_CYAA5
Length = 670
Score = 97.4 bits (241), Expect = 5e-19
Identities = 62/165 (37%), Positives = 88/165 (53%), Gaps = 3/165 (1%)
Frame = +2
Query: 29 YPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSWEA- 205
YP F ++ + A+ L P ++ + R DL HL Y +D ST E+DD +S E
Sbjct: 236 YPLNFPQKVLDVASSYLQTLPPDAD----SDRLDLTHLKVYTIDDESTEEIDDGLSVEYL 291
Query: 206 --DTGRLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLDASN 379
D +LW+HIAD + + PG+ L EA +RS TLYLPT I+M P+ELA +SL
Sbjct: 292 DDDRVKLWIHIADPTRLVTPGDELDLEARKRSTTLYLPTGMISMFPVELATGPMSL---- 347
Query: 380 GHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTY 514
+ ALSFG + G++ D + SLI+ +RLTY
Sbjct: 348 ------RQGKLCAALSFGVILDSHGAILDYSIHASLIKPTYRLTY 386
[18][TOP]
>UniRef100_A4S361 Predicted protein n=1 Tax=Ostreococcus lucimarinus CCE9901
RepID=A4S361_OSTLU
Length = 645
Score = 97.4 bits (241), Expect = 5e-19
Identities = 61/157 (38%), Positives = 91/157 (57%), Gaps = 4/157 (2%)
Frame = +2
Query: 59 EAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSWEA--DTG--RLWV 226
+A +LS P+ ++ +A R DL +L +YA+D A T EVDDA+S EA D G R+WV
Sbjct: 216 KACAEVLSNEPVDAD---AASRVDLTYLRAYAIDDAETVEVDDAVSAEALGDDGQIRVWV 272
Query: 227 HIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLDASNGHAHVSEEE 406
HIAD + W+ G PL A +R+ TLY PTE + M PLE+A +SL S +
Sbjct: 273 HIADPTRWIPLGSPLDAIARQRATTLYYPTEIVPMFPLEIAAGPMSLG--------SRSD 324
Query: 407 NAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTYE 517
A A++ + +G++ D ++MPS ++ R TY+
Sbjct: 325 VASEAMTVRADIDREGNIMDFEIMPSFVKLDRRWTYD 361
[19][TOP]
>UniRef100_Q8DL46 Ribonuclease II n=1 Tax=Thermosynechococcus elongatus BP-1
RepID=Q8DL46_THEEB
Length = 674
Score = 96.7 bits (239), Expect = 8e-19
Identities = 60/161 (37%), Positives = 87/161 (54%), Gaps = 2/161 (1%)
Frame = +2
Query: 41 FSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSWEA--DTG 214
FS ++ A+ L++ P + + R DL HL Y +D ST E+DD +S E D
Sbjct: 242 FSAKVLAVAHERLTSPPTDID---APLRRDLTHLKVYTIDDESTQEIDDGLSLEVIGDRQ 298
Query: 215 RLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLDASNGHAHV 394
+LW+HIAD + W+ + L EA RR+ T+YLPT I M P ELA +SL A
Sbjct: 299 KLWIHIADPTRWVMVDDLLDQEARRRATTVYLPTGMIPMFPTELATGPMSLVAG------ 352
Query: 395 SEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTYE 517
ALSFG +A+ G + + ++ PS IR +RL+Y+
Sbjct: 353 ----QTCCALSFGILLADSGEVLEYEICPSWIRPTYRLSYD 389
[20][TOP]
>UniRef100_B2J0D2 Ribonuclease II n=1 Tax=Nostoc punctiforme PCC 73102
RepID=B2J0D2_NOSP7
Length = 686
Score = 96.7 bits (239), Expect = 8e-19
Identities = 66/175 (37%), Positives = 86/175 (49%), Gaps = 3/175 (1%)
Frame = +2
Query: 2 SLELRASHFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEV 181
+L LR S P F ++ E A L P+ S+ R DL HL Y +D +T E+
Sbjct: 244 NLFLRRSSI-PIQFPNKVLEVAQQRLDFPPIDSDTN----RLDLTHLKVYTIDDETTTEI 298
Query: 182 DDAMSWEA---DTGRLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELAR 352
DD +SWE RLWVHIAD + WL P + L EA +R T+YLPT I M P LA
Sbjct: 299 DDGLSWEILPDGRERLWVHIADPTRWLVPEDELDLEARKRGSTVYLPTGMIPMFPEVLAT 358
Query: 353 DGLSLDASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTYE 517
+SL + ALSFG + G + D + S I+ +RLTYE
Sbjct: 359 GPMSL----------IQGRVCCALSFGIILGTTGGVEDYSIHTSSIKPTYRLTYE 403
[21][TOP]
>UniRef100_B7JW30 Exoribonuclease II n=1 Tax=Cyanothece sp. PCC 8801
RepID=B7JW30_CYAP8
Length = 671
Score = 95.9 bits (237), Expect = 1e-18
Identities = 65/174 (37%), Positives = 92/174 (52%), Gaps = 3/174 (1%)
Frame = +2
Query: 2 SLELRASHFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEV 181
+L LR S YP F ++ + A L+ P + R DL HL Y +D ST E+
Sbjct: 228 NLFLRRSS-YPMQFPKKVLDVAQSFLTLPPPDQDED----RLDLTHLKVYTIDDESTEEI 282
Query: 182 DDAMSWEA---DTGRLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELAR 352
DD +S E D +LW+HIAD + + PG+ L EA RR+ TLYLPT I+M P+ELA
Sbjct: 283 DDGLSVEFLSDDQVKLWIHIADPTRLVSPGDELDLEARRRTTTLYLPTGMISMFPVELAT 342
Query: 353 DGLSLDASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTY 514
+SL + +LSF T+ +G++ D + SLI+ +RLTY
Sbjct: 343 GPMSL----------IQGKICPSLSFAVTLDNEGAVLDYSIHASLIKPTYRLTY 386
[22][TOP]
>UniRef100_C7QT24 Exoribonuclease II n=1 Tax=Cyanothece sp. PCC 8802
RepID=C7QT24_CYAP0
Length = 671
Score = 95.9 bits (237), Expect = 1e-18
Identities = 65/174 (37%), Positives = 92/174 (52%), Gaps = 3/174 (1%)
Frame = +2
Query: 2 SLELRASHFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEV 181
+L LR S YP F ++ + A L+ P + R DL HL Y +D ST E+
Sbjct: 228 NLFLRRSS-YPMQFPKKVLDVAQSFLTLPPPDQDED----RLDLTHLKVYTIDDESTEEI 282
Query: 182 DDAMSWEA---DTGRLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELAR 352
DD +S E D +LW+HIAD + + PG+ L EA RR+ TLYLPT I+M P+ELA
Sbjct: 283 DDGLSVEFLSDDQVKLWIHIADPTRLVSPGDELDLEARRRTTTLYLPTGMISMFPVELAT 342
Query: 353 DGLSLDASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTY 514
+SL + +LSF T+ + G++ D + SLI+ +RLTY
Sbjct: 343 GPMSL----------IQGKICPSLSFAVTLDDQGAVLDYSIHASLIKPTYRLTY 386
[23][TOP]
>UniRef100_A3IXH4 Ribonuclease II n=1 Tax=Cyanothece sp. CCY0110 RepID=A3IXH4_9CHRO
Length = 670
Score = 95.9 bits (237), Expect = 1e-18
Identities = 59/165 (35%), Positives = 89/165 (53%), Gaps = 3/165 (1%)
Frame = +2
Query: 29 YPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSWEA- 205
YP F ++ + ++ L P ++ + R DL HL Y +D ST E+DD +S E
Sbjct: 236 YPLNFPQKVLDVSSSYLQTLPPDAD----SDRLDLTHLKVYTIDDESTKEIDDGLSVEYL 291
Query: 206 --DTGRLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLDASN 379
+ +LW+HIAD + + PG+ L EA +RS TLYLPT I+M P+ELA +SL
Sbjct: 292 DDERVKLWIHIADPTRLVTPGDELDLEARKRSTTLYLPTGMISMFPVELATGPMSL---- 347
Query: 380 GHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTY 514
+ ALSFG + +G++ D + S+I+ +RLTY
Sbjct: 348 ------RQGELCAALSFGVVLDSEGAVADFSIHASVIKPTYRLTY 386
[24][TOP]
>UniRef100_A0YR63 Ribonuclease II n=1 Tax=Lyngbya sp. PCC 8106 RepID=A0YR63_9CYAN
Length = 672
Score = 95.5 bits (236), Expect = 2e-18
Identities = 69/175 (39%), Positives = 89/175 (50%), Gaps = 3/175 (1%)
Frame = +2
Query: 2 SLELRASHFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEV 181
+L LR + P F ++ E A LL + P P R DL L Y +D ST E+
Sbjct: 230 NLSLRRTQI-PTQFPMQVFEVAQQLLDSQP----PDPDTDRLDLTDLKVYTIDDESTREI 284
Query: 182 DDAMSWE--AD-TGRLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELAR 352
DD +S E AD RLW+HIAD + L PG+ L EA RR+ T+YLPT I M P ELA
Sbjct: 285 DDGLSVEFMADGQQRLWIHIADPTRLLCPGDELDLEARRRTTTVYLPTGIIPMFPSELAT 344
Query: 353 DGLSLDASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTYE 517
+SL E ALSFG + E G + D + S I+ +RLTY+
Sbjct: 345 GPMSL----------VEGKLCCALSFGVILDESGQVKDYSIHASTIKPTYRLTYD 389
[25][TOP]
>UniRef100_B5W9J3 Exoribonuclease II n=1 Tax=Arthrospira maxima CS-328
RepID=B5W9J3_SPIMA
Length = 672
Score = 95.1 bits (235), Expect = 2e-18
Identities = 56/135 (41%), Positives = 76/135 (56%), Gaps = 3/135 (2%)
Frame = +2
Query: 122 RTDLRHLDSYAVDSASTFEVDDAMSWEA---DTGRLWVHIADVSAWLKPGEPLTTEALRR 292
R DL HL Y +D ST E+DD +S E T ++W+HIAD + + PG+ L EA RR
Sbjct: 266 RFDLTHLKVYTIDDESTREIDDGVSLEFLEDGTQKIWIHIADPTRLITPGDELDLEARRR 325
Query: 293 SCTLYLPTETITMLPLELARDGLSLDASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQ 472
+ ++YLPT I M P ELA +SL + ALSFG + EDGSL D
Sbjct: 326 TTSVYLPTGMIPMFPPELATGPMSL----------VQGKICCALSFGVVLNEDGSLKDYS 375
Query: 473 VMPSLIRRPWRLTYE 517
+ S+I+ +RLTY+
Sbjct: 376 IHTSIIKPTYRLTYD 390
[26][TOP]
>UniRef100_Q4BZP1 Exoribonuclease II n=1 Tax=Crocosphaera watsonii WH 8501
RepID=Q4BZP1_CROWT
Length = 670
Score = 94.4 bits (233), Expect = 4e-18
Identities = 61/165 (36%), Positives = 87/165 (52%), Gaps = 3/165 (1%)
Frame = +2
Query: 29 YPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMS---W 199
YP F ++ + A+ + P ++ R DL L Y +D ST E+DD +S
Sbjct: 236 YPVNFPQKVLDVASSSVQTLPPDAD----GDRLDLTRLKVYTIDDESTEEIDDGLSVEYL 291
Query: 200 EADTGRLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLDASN 379
E D +LW+HIAD + + PG+ L EA +RS TLYLPT I+M PLELA +SL
Sbjct: 292 ENDQVKLWIHIADPTRLVTPGDELDLEARKRSTTLYLPTGMISMFPLELAAGPMSLC--- 348
Query: 380 GHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTY 514
+ ALSFG + +G++ D + SLI+ +RLTY
Sbjct: 349 -------QGQLCAALSFGVILDSEGAVVDYSIHASLIKPTYRLTY 386
[27][TOP]
>UniRef100_Q010V1 Ribonuclease II (ISS) n=1 Tax=Ostreococcus tauri RepID=Q010V1_OSTTA
Length = 758
Score = 93.6 bits (231), Expect = 7e-18
Identities = 63/165 (38%), Positives = 91/165 (55%), Gaps = 3/165 (1%)
Frame = +2
Query: 32 PPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSWEA-D 208
P F E + +L+ P ++V S+ R DL HL +YA+D A T EVDDA+S E+ D
Sbjct: 322 PIDFPQEALDECASILANPP--ADVDASS-RVDLTHLSAYAIDDAGTVEVDDAVSAESLD 378
Query: 209 TGRL--WVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLDASNG 382
GR+ WVH+AD S W+ L A R+ TLY PTE + M PL+++ +SL A
Sbjct: 379 EGRIRVWVHVADPSRWVTMNSTLDITARGRATTLYYPTELVPMFPLDISAGPMSLGA--- 435
Query: 383 HAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTYE 517
+A SE A++ V DG++ D + PSL++ R TY+
Sbjct: 436 NAEASE------AMTIRADVDADGNIEDFDITPSLVKIDRRWTYD 474
[28][TOP]
>UniRef100_A9RXJ0 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens
RepID=A9RXJ0_PHYPA
Length = 717
Score = 90.5 bits (223), Expect = 6e-17
Identities = 61/165 (36%), Positives = 87/165 (52%), Gaps = 3/165 (1%)
Frame = +2
Query: 32 PPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSW-EAD 208
P FS E EAA +++ PL + + R DL HL Y +DS E+DD +S
Sbjct: 288 PIEFSSECVEAAQSVMTNPPLDTNL---VNRVDLTHLKVYTIDSEDADEIDDGLSAIRLP 344
Query: 209 TGRL--WVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLDASNG 382
GR+ W+H+AD + W+ P L EA RRS ++YLPT + M P+ LA +SL G
Sbjct: 345 DGRIKVWIHVADPTRWVPPMHLLDKEAKRRSTSIYLPTGAVPMFPMNLASTVMSL--RQG 402
Query: 383 HAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTYE 517
H E L +S F DGS+ + +VM S I+ +RL+Y+
Sbjct: 403 H------EACALTVSIIFHC--DGSIAESEVMCSTIKPTYRLSYD 439
[29][TOP]
>UniRef100_A8IJ46 3'-5' exoribonuclease II (Fragment) n=1 Tax=Chlamydomonas
reinhardtii RepID=A8IJ46_CHLRE
Length = 699
Score = 90.5 bits (223), Expect = 6e-17
Identities = 57/164 (34%), Positives = 80/164 (48%), Gaps = 3/164 (1%)
Frame = +2
Query: 35 PTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSWEADTG 214
P F +++ AA LL + P + G R DL HL + +D A+T EVDD +S E G
Sbjct: 340 PDFPADVERAAQALLDSPPPDPDAGN---REDLTHLRCFTIDDAATTEVDDGLSLERLAG 396
Query: 215 ---RLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLDASNGH 385
R+W+H+AD + W+ P L +R TLYLP ++ M P LA SL A
Sbjct: 397 GGTRIWIHVADPTRWISPDTQLDLAGRQRGRTLYLPWGSVPMFPRALAEGPFSLRAG--- 453
Query: 386 AHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTYE 517
ALS G + DGS+ +V PS + +LTY+
Sbjct: 454 -------QVCDALSVGVELRPDGSVASARVAPSRVLVSHKLTYD 490
[30][TOP]
>UniRef100_A3RLY2 Chloroplast ribonuclease n=1 Tax=Chlamydomonas reinhardtii
RepID=A3RLY2_CHLRE
Length = 1083
Score = 90.5 bits (223), Expect = 6e-17
Identities = 57/164 (34%), Positives = 80/164 (48%), Gaps = 3/164 (1%)
Frame = +2
Query: 35 PTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSWEADTG 214
P F +++ AA LL + P + G R DL HL + +D A+T EVDD +S E G
Sbjct: 577 PDFPADVERAAQALLDSPPPDPDAGN---REDLTHLRCFTIDDAATTEVDDGLSLERLAG 633
Query: 215 ---RLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLDASNGH 385
R+W+H+AD + W+ P L +R TLYLP ++ M P LA SL A
Sbjct: 634 GGTRIWIHVADPTRWISPDTQLDLAGRQRGRTLYLPWGSVPMFPRALAEGPFSLRAG--- 690
Query: 386 AHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTYE 517
ALS G + DGS+ +V PS + +LTY+
Sbjct: 691 -------QVCDALSVGVELRPDGSVASARVAPSRVLVSHKLTYD 727
[31][TOP]
>UniRef100_A0LG74 Exoribonuclease II n=1 Tax=Syntrophobacter fumaroxidans MPOB
RepID=A0LG74_SYNFM
Length = 680
Score = 90.1 bits (222), Expect = 8e-17
Identities = 66/164 (40%), Positives = 90/164 (54%), Gaps = 5/164 (3%)
Frame = +2
Query: 41 FSPELQEAANGLL-SAGPLAS-EVGPSACRTDLRHLDSYAVDSASTFEVDDAMSWEADTG 214
F E++E +L SA P AS E P R DLRHLD VDSA T + DDA+S+ A G
Sbjct: 257 FPQEVEERVEVILHSARPGASGETEPQ--RRDLRHLDCLTVDSALTRDYDDALSFRALDG 314
Query: 215 RLW---VHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLDASNGH 385
+ +HIAD + ++ G+ L EA RR+ ++YLP I+MLP+ L+ D SL A
Sbjct: 315 NRFEVGIHIADAAEFVLKGDVLDREAERRATSIYLPDARISMLPVPLSEDLCSLKAGEDR 374
Query: 386 AHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTYE 517
ALSF F V DG++ +++ S IR +LTYE
Sbjct: 375 P----------ALSFLFVVHGDGTIAGSEIVSSTIRVAEQLTYE 408
[32][TOP]
>UniRef100_A5GTC0 Exoribonuclease R/ribonuclease II n=1 Tax=Synechococcus sp. RCC307
RepID=A5GTC0_SYNR3
Length = 655
Score = 87.0 bits (214), Expect = 7e-16
Identities = 55/134 (41%), Positives = 72/134 (53%), Gaps = 2/134 (1%)
Frame = +2
Query: 122 RTDLRHLDSYAVDSASTFEVDDAMSWEADTGRLW--VHIADVSAWLKPGEPLTTEALRRS 295
R DL HL +++DSAST EVDDA+ E G LW VHIAD WL+PG+ L EA RR
Sbjct: 255 RRDLTHLSCFSIDSASTQEVDDAIGLERRDGDLWIWVHIADPHQWLEPGDRLDLEAQRRG 314
Query: 296 CTLYLPTETITMLPLELARDGLSLDASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQV 475
TLYL + M P+ +ARD +SL ALS G + DG++ +
Sbjct: 315 STLYLSGGAMPMFPMAVARDCMSL----------RPMRRCGALSVGVLLDADGAITAVKP 364
Query: 476 MPSLIRRPWRLTYE 517
S ++ + LTYE
Sbjct: 365 CRSWVKVSYGLTYE 378
[33][TOP]
>UniRef100_D0CJ15 Exoribonuclease II n=1 Tax=Synechococcus sp. WH 8109
RepID=D0CJ15_9SYNE
Length = 676
Score = 86.7 bits (213), Expect = 9e-16
Identities = 60/161 (37%), Positives = 86/161 (53%), Gaps = 2/161 (1%)
Frame = +2
Query: 38 TFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSWEADTGR 217
+F+ +L E AN L++ E+ R DL HL +Y++D + T E+DDA+S E G
Sbjct: 254 SFTSDLVEEANRLVALSN--EELPGDEQRIDLTHLATYSLDDSGTREIDDALSLERRDGV 311
Query: 218 --LWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLDASNGHAH 391
+W+HIAD S + PL EA RR+ +LYL + MLPLELA LSL A A
Sbjct: 312 DWIWIHIADPSRLIDIDSPLDHEARRRATSLYLAEGVMPMLPLELAAGPLSLRAGQRCA- 370
Query: 392 VSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTY 514
ALS + +DG++ + ++ S IR + LTY
Sbjct: 371 ---------ALSVAVCLDDDGAVAEQRIARSWIRPRYGLTY 402
[34][TOP]
>UniRef100_Q066Y3 Exoribonuclease II n=1 Tax=Synechococcus sp. BL107
RepID=Q066Y3_9SYNE
Length = 674
Score = 86.3 bits (212), Expect = 1e-15
Identities = 59/162 (36%), Positives = 86/162 (53%), Gaps = 3/162 (1%)
Frame = +2
Query: 38 TFSPELQEAANGLLSAGPLASEVGPSAC-RTDLRHLDSYAVDSASTFEVDDAMSWEADTG 214
TF+ EL+ A L+S+ A++ P R DL HL +Y +D A T E+DDA+S + G
Sbjct: 252 TFAMELEHEAQRLISS---AAQPHPGDDDRLDLCHLATYTLDDAGTREIDDAVSLDVQNG 308
Query: 215 R--LWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLDASNGHA 388
+WVHIAD + + PG PL EA RR+ +LYL + MLPL LA LSL A A
Sbjct: 309 EVWIWVHIADPARLISPGSPLDQEARRRATSLYLADGVLPMLPLGLAAGPLSLRAGQRTA 368
Query: 389 HVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTY 514
A+S + G++ + ++ S ++ + LTY
Sbjct: 369 ----------AISVSVRLDSAGAIAERRIARSWVQPRYGLTY 400
[35][TOP]
>UniRef100_Q3AJZ2 Probable ribonuclease II n=1 Tax=Synechococcus sp. CC9605
RepID=Q3AJZ2_SYNSC
Length = 676
Score = 85.5 bits (210), Expect = 2e-15
Identities = 61/160 (38%), Positives = 83/160 (51%), Gaps = 2/160 (1%)
Frame = +2
Query: 41 FSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSWEADTGR- 217
F +L E AN L++ E+ R DL HL +Y++D A T E+DDA+S E G
Sbjct: 255 FPSDLMEEANRLVALSE--EELPADEQRIDLTHLATYSLDDAGTREIDDALSLERRDGVN 312
Query: 218 -LWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLDASNGHAHV 394
+W+HIAD S + PL EA RR+ +LYL + MLPLELA LSL A A
Sbjct: 313 WIWIHIADPSRLIDIDSPLDQEARRRATSLYLAEGVMPMLPLELAAGPLSLRAGQRCA-- 370
Query: 395 SEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTY 514
ALS + DG++ + ++ S IR + LTY
Sbjct: 371 --------ALSAAVHLDADGAVVEQRIARSWIRPRYGLTY 402
[36][TOP]
>UniRef100_B0C2J2 Exoribonuclease II n=1 Tax=Acaryochloris marina MBIC11017
RepID=B0C2J2_ACAM1
Length = 680
Score = 85.5 bits (210), Expect = 2e-15
Identities = 59/164 (35%), Positives = 80/164 (48%), Gaps = 3/164 (1%)
Frame = +2
Query: 32 PPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSWEA-- 205
P FS + A + LL P A R DL L Y +D ST E+DD +S E
Sbjct: 246 PVQFSSSVLAAVDQLLKMPPPDLH----AERHDLTSLKVYTIDDESTSEIDDGLSLEFLP 301
Query: 206 -DTGRLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLDASNG 382
R+WVHIAD S W+ G+ L EA RR T+YLPT I M P EL+ +SL
Sbjct: 302 DGKQRVWVHIADPSRWITLGDELDQEAQRRGTTVYLPTGMIPMFPTELSTGPMSL----- 356
Query: 383 HAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTY 514
+ ALSFG + +G++ ++ S ++ +RLTY
Sbjct: 357 -----VQGQICCALSFGVILTAEGAIESYEIRCSQVQPTYRLTY 395
[37][TOP]
>UniRef100_A3Z2B9 Probable ribonuclease II n=1 Tax=Synechococcus sp. WH 5701
RepID=A3Z2B9_9SYNE
Length = 674
Score = 83.6 bits (205), Expect = 7e-15
Identities = 62/161 (38%), Positives = 78/161 (48%), Gaps = 3/161 (1%)
Frame = +2
Query: 41 FSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSWEADTG-- 214
F+P L E A LL+ L E R DL L SY +D A T E+DDA++ E G
Sbjct: 253 FAPALLEDAEQLLAQAEL--EQPGDGSRRDLTALRSYTLDDADTEEIDDAVALELLDGGG 310
Query: 215 -RLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLDASNGHAH 391
RLWVHIAD + G PL EA RR +LYL + M PL LA SL
Sbjct: 311 LRLWVHIADPGRLVASGSPLDLEARRRGSSLYLAAGVVPMFPLPLAVGPFSL-------- 362
Query: 392 VSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTY 514
+ A S +AEDGS+ +++ S I +RLTY
Sbjct: 363 --RQGQRCAAWSCAVELAEDGSVARHELVRSWICPTYRLTY 401
[38][TOP]
>UniRef100_Q3AVJ3 Exoribonuclease II n=1 Tax=Synechococcus sp. CC9902
RepID=Q3AVJ3_SYNS9
Length = 674
Score = 83.2 bits (204), Expect = 1e-14
Identities = 58/167 (34%), Positives = 83/167 (49%), Gaps = 2/167 (1%)
Frame = +2
Query: 20 SHFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSW 199
S + F+ EL++ A L+ + A R DL HL +Y +D A T E+DD +S
Sbjct: 246 SSVWSKKFAIELEDEAQQLILSA--AHPQPGDDDRLDLCHLATYTLDDAGTREIDDGISL 303
Query: 200 EADTGR--LWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLDA 373
+ G +WVHIAD + + PG PL EA RR+ +LYL + MLPL LA LSL A
Sbjct: 304 DDQNGEVWIWVHIADPARLIPPGSPLDQEARRRATSLYLADGVLPMLPLSLAAGPLSLRA 363
Query: 374 SNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTY 514
A A+S + G++ D ++ S +R + LTY
Sbjct: 364 GERTA----------AVSVAVRLDSAGAIADRRIARSWVRPRYGLTY 400
[39][TOP]
>UniRef100_Q6NQJ6 At5g02250 n=1 Tax=Arabidopsis thaliana RepID=Q6NQJ6_ARATH
Length = 803
Score = 83.2 bits (204), Expect = 1e-14
Identities = 60/165 (36%), Positives = 86/165 (52%), Gaps = 3/165 (1%)
Frame = +2
Query: 32 PPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMS-WEAD 208
P S + EAA LLS +S++ + R DL HL YA+D E+DDA+S
Sbjct: 373 PTHHSEAITEAAEALLSE---SSDID-AVRRIDLTHLKVYAIDVDEADELDDALSATRLQ 428
Query: 209 TGRL--WVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLDASNG 382
GR+ W+H+AD + ++ PG + EA RR +++LPT T M P +LA +G+SL
Sbjct: 429 DGRIKIWIHVADPARYVTPGSKVDREARRRGTSVFLPTATYPMFPEKLAMEGMSL----- 483
Query: 383 HAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTYE 517
E NAV S + DG + + V S+IR + LTYE
Sbjct: 484 --RQGENCNAV---SVSVVLRSDGCITEYSVDNSIIRPTYMLTYE 523
[40][TOP]
>UniRef100_B2GAM4 Ribonuclease R n=1 Tax=Lactobacillus fermentum IFO 3956
RepID=B2GAM4_LACF3
Length = 797
Score = 80.5 bits (197), Expect = 6e-14
Identities = 57/169 (33%), Positives = 86/169 (50%), Gaps = 3/169 (1%)
Frame = +2
Query: 20 SHFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAM-S 196
+H P F E+ + AN + PL + A R DL +DS + ++DDA+ +
Sbjct: 223 AHDVPHEFPKEVLDQANQI----PLTVQPEEKAGRPDLTDQPLVTIDSIESKDLDDAVVA 278
Query: 197 WEADTGR--LWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLD 370
W+ D G L VHIADVS +++PG PL EA +R ++YL I MLP L
Sbjct: 279 WKLDNGNYHLGVHIADVSHYVQPGTPLDEEAFKRGTSVYLTDRVIPMLPRRL-------- 330
Query: 371 ASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTYE 517
SNG ++ E LA+S + G++ ++ PS+IR R+TY+
Sbjct: 331 -SNGICSLNPGEER-LAMSCEMEIDPQGNIVSHEIFPSVIRSHARMTYK 377
[41][TOP]
>UniRef100_B0TW06 Ribonuclease II family protein n=1 Tax=Francisella philomiragia
subsp. philomiragia ATCC 25017 RepID=B0TW06_FRAP2
Length = 624
Score = 80.5 bits (197), Expect = 6e-14
Identities = 50/138 (36%), Positives = 73/138 (52%), Gaps = 1/138 (0%)
Frame = +2
Query: 107 GPSACRTDLRHLDSYAVDSASTFEVDDAMSWEADTGRLWVHIADVSAWLKPGEPLTTEAL 286
G + R DL HL +YA+D + + DDA+SW+A ++WVHIAD S+ + G+ + EA
Sbjct: 233 GSDSQRVDLTHLTAYAIDDEGSNDPDDAISWDAQQNKMWVHIADPSSSISFGDEVDLEAR 292
Query: 287 RRSCTLYLPTETITMLPLELARD-GLSLDASNGHAHVSEEENAVLALSFGFTVAEDGSLG 463
R LY+P ITMLP + + GL L + ALS GF + E G +
Sbjct: 293 ARGSNLYVPEHIITMLPPQATQKLGLGL------------QEVSPALSVGFRLDESGDIH 340
Query: 464 DPQVMPSLIRRPWRLTYE 517
D ++ S I + R +YE
Sbjct: 341 DIEICFSNI-KVTRYSYE 357
[42][TOP]
>UniRef100_D0DTZ4 Ribonuclease R n=1 Tax=Lactobacillus fermentum 28-3-CHN
RepID=D0DTZ4_LACFE
Length = 797
Score = 80.5 bits (197), Expect = 6e-14
Identities = 57/169 (33%), Positives = 86/169 (50%), Gaps = 3/169 (1%)
Frame = +2
Query: 20 SHFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAM-S 196
+H P F E+ + AN + PL + A R DL +DS + ++DDA+ +
Sbjct: 223 AHDVPHEFPKEVLDQANQI----PLTVQPEEKAGRLDLTDQPLVTIDSIESKDLDDAVVA 278
Query: 197 WEADTGR--LWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLD 370
W+ D G L VHIADVS +++PG PL EA +R ++YL I MLP L
Sbjct: 279 WKLDNGNYHLGVHIADVSHYVQPGTPLDEEAFKRGTSVYLTDRVIPMLPRRL-------- 330
Query: 371 ASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTYE 517
SNG ++ E LA+S + G++ ++ PS+IR R+TY+
Sbjct: 331 -SNGICSLNPGEER-LAMSCEMEIDPQGNIVSHEIFPSVIRSHARMTYK 377
[43][TOP]
>UniRef100_C6YTB9 Ribonuclease II n=1 Tax=Francisella philomiragia subsp.
philomiragia ATCC 25015 RepID=C6YTB9_9GAMM
Length = 624
Score = 80.5 bits (197), Expect = 6e-14
Identities = 50/138 (36%), Positives = 73/138 (52%), Gaps = 1/138 (0%)
Frame = +2
Query: 107 GPSACRTDLRHLDSYAVDSASTFEVDDAMSWEADTGRLWVHIADVSAWLKPGEPLTTEAL 286
G + R DL HL +YA+D + + DDA+SW+A ++WVHIAD S+ + G+ + EA
Sbjct: 233 GSDSQRVDLTHLTAYAIDDEGSNDPDDAISWDAQQNKMWVHIADPSSSISFGDEVDLEAR 292
Query: 287 RRSCTLYLPTETITMLPLELARD-GLSLDASNGHAHVSEEENAVLALSFGFTVAEDGSLG 463
R LY+P ITMLP + + GL L + ALS GF + E G +
Sbjct: 293 ARGSNLYVPEHIITMLPPQATQKLGLGL------------QEVSPALSVGFRLDESGDIH 340
Query: 464 DPQVMPSLIRRPWRLTYE 517
D ++ S I + R +YE
Sbjct: 341 DIEICFSNI-KVTRYSYE 357
[44][TOP]
>UniRef100_C0WWN2 Exoribonuclease R n=1 Tax=Lactobacillus fermentum ATCC 14931
RepID=C0WWN2_LACFE
Length = 797
Score = 80.5 bits (197), Expect = 6e-14
Identities = 57/169 (33%), Positives = 86/169 (50%), Gaps = 3/169 (1%)
Frame = +2
Query: 20 SHFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAM-S 196
+H P F E+ + AN + PL + A R DL +DS + ++DDA+ +
Sbjct: 223 AHDVPHEFPKEVLDQANQI----PLTVQPEEKAGRPDLTDQPLVTIDSIESKDLDDAVVA 278
Query: 197 WEADTGR--LWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLD 370
W+ D G L VHIADVS +++PG PL EA +R ++YL I MLP L
Sbjct: 279 WKLDNGNYHLGVHIADVSHYVQPGTPLDEEAFKRGTSVYLTDRVIPMLPRRL-------- 330
Query: 371 ASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTYE 517
SNG ++ E LA+S + G++ ++ PS+IR R+TY+
Sbjct: 331 -SNGICSLNPGEER-LAMSCEMEIDPQGNIVSHEIFPSVIRSHARMTYK 377
[45][TOP]
>UniRef100_Q72IG1 Putative ribonuclease n=1 Tax=Thermus thermophilus HB27
RepID=Q72IG1_THET2
Length = 599
Score = 80.1 bits (196), Expect = 8e-14
Identities = 57/137 (41%), Positives = 75/137 (54%), Gaps = 2/137 (1%)
Frame = +2
Query: 110 PSACRTDLRHLDSYAVDSASTFEVDDAMSWEADTG--RLWVHIADVSAWLKPGEPLTTEA 283
P R DL HL ++A+D + + DDA+ E G RL+VH+ADV+A + P PL EA
Sbjct: 220 PEEDRVDLTHLPAFAIDDEGSQDPDDAVFAEKVEGGFRLFVHVADVAALVPPKSPLDEEA 279
Query: 284 LRRSCTLYLPTETITMLPLELARDGLSLDASNGHAHVSEEENAVLALSFGFTVAEDGSLG 463
LRR LYLP T+ MLP + L L G VS AL+F V+E+G L
Sbjct: 280 LRRGANLYLPEGTVPMLP-PAVTEALGL----GLREVSP------ALTFELWVSEEGELL 328
Query: 464 DPQVMPSLIRRPWRLTY 514
+ +V PS + R RLTY
Sbjct: 329 EERVYPSWV-RVTRLTY 344
[46][TOP]
>UniRef100_Q5SI46 Ribonuclease II family protein n=1 Tax=Thermus thermophilus HB8
RepID=Q5SI46_THET8
Length = 598
Score = 80.1 bits (196), Expect = 8e-14
Identities = 57/137 (41%), Positives = 75/137 (54%), Gaps = 2/137 (1%)
Frame = +2
Query: 110 PSACRTDLRHLDSYAVDSASTFEVDDAMSWEADTG--RLWVHIADVSAWLKPGEPLTTEA 283
P R DL HL ++A+D + + DDA+ E G RL+VH+ADV+A + P PL EA
Sbjct: 219 PEEDRVDLTHLPAFAIDDEGSQDPDDAVFAEKVEGGFRLFVHVADVAALVPPKSPLDEEA 278
Query: 284 LRRSCTLYLPTETITMLPLELARDGLSLDASNGHAHVSEEENAVLALSFGFTVAEDGSLG 463
LRR LYLP T+ MLP + L L G VS AL+F V+E+G L
Sbjct: 279 LRRGANLYLPEGTVPMLP-PAVTEALGL----GLREVSP------ALTFELWVSEEGELL 327
Query: 464 DPQVMPSLIRRPWRLTY 514
+ +V PS + R RLTY
Sbjct: 328 EERVYPSWV-RVTRLTY 343
[47][TOP]
>UniRef100_C9RAV4 Ribonuclease R n=1 Tax=Ammonifex degensii KC4 RepID=C9RAV4_9THEO
Length = 715
Score = 79.3 bits (194), Expect = 1e-13
Identities = 60/164 (36%), Positives = 81/164 (49%), Gaps = 3/164 (1%)
Frame = +2
Query: 32 PPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSWEA-- 205
P F PE++E A + PL A R DLR +D ++DDA+S E
Sbjct: 218 PDGFPPEVEEEAENI----PLTIRPEELAGRRDLREWLIVTIDGEDAKDLDDAVSLELLH 273
Query: 206 -DTGRLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLDASNG 382
T RL VHIADVS +++ G L EA +R ++YLP I MLP L SNG
Sbjct: 274 DGTYRLGVHIADVSYYVREGSALDREAFQRGTSIYLPDRVIPMLPPRL---------SNG 324
Query: 383 HAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTY 514
++ EE+ L LS V G + + ++ PS+IR RLTY
Sbjct: 325 ICSLNPEEDR-LTLSVLMRVDSKGEVLEYELFPSVIRSKARLTY 367
[48][TOP]
>UniRef100_A7PNN2 Chromosome chr8 scaffold_23, whole genome shotgun sequence n=2
Tax=Vitis vinifera RepID=A7PNN2_VITVI
Length = 702
Score = 79.0 bits (193), Expect = 2e-13
Identities = 54/162 (33%), Positives = 85/162 (52%), Gaps = 3/162 (1%)
Frame = +2
Query: 41 FSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMS-WEADTGR 217
+ E+ AA LLS EV R DL HL YA+D E+DDA+S GR
Sbjct: 276 YPDEVISAAENLLSEPFDPDEVD----RKDLTHLKVYAIDVDEADELDDALSATRLLDGR 331
Query: 218 L--WVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLDASNGHAH 391
+ W+H+AD ++ ++PG + EA++R +++LPT T M P +LA +G+SL
Sbjct: 332 IKVWIHVADPTSLIQPGSIVDREAMKRGTSIFLPTATYPMFPEKLAMEGMSL-------- 383
Query: 392 VSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTYE 517
++ A++ + DGS+ + V S+I+ + LTYE
Sbjct: 384 --KQGELCNAVTVSVVLHSDGSIAECTVDNSIIKPTYMLTYE 423
[49][TOP]
>UniRef100_B9HBM5 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9HBM5_POPTR
Length = 792
Score = 79.0 bits (193), Expect = 2e-13
Identities = 46/135 (34%), Positives = 74/135 (54%), Gaps = 3/135 (2%)
Frame = +2
Query: 122 RTDLRHLDSYAVDSASTFEVDDAMS-WEADTGRL--WVHIADVSAWLKPGEPLTTEALRR 292
R DL HL YA+D E+DDA+S GR+ W+H+AD + +++PG + EA+RR
Sbjct: 388 RKDLTHLKVYAIDVDEADELDDALSATRLQDGRIKVWIHVADPARYVQPGSKVDREAMRR 447
Query: 293 SCTLYLPTETITMLPLELARDGLSLDASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQ 472
+++LPT T M P +LA +G+SL ++ A++ + DG + +
Sbjct: 448 GTSVFLPTATYPMFPEKLAMEGMSL----------KQGEVCNAVTVSVILHSDGCIAEYS 497
Query: 473 VMPSLIRRPWRLTYE 517
V S+I+ + LTYE
Sbjct: 498 VDNSIIKPTYMLTYE 512
[50][TOP]
>UniRef100_C1XVL5 Exoribonuclease R n=1 Tax=Meiothermus silvanus DSM 9946
RepID=C1XVL5_9DEIN
Length = 602
Score = 78.6 bits (192), Expect = 2e-13
Identities = 52/130 (40%), Positives = 73/130 (56%), Gaps = 2/130 (1%)
Frame = +2
Query: 110 PSACRTDLRHLDSYAVDSASTFEVDDAMSWEADTG--RLWVHIADVSAWLKPGEPLTTEA 283
P RTDL HL++YA+D + + DDA+ E G RL VH+ADV+A ++PG L EA
Sbjct: 220 PEEERTDLTHLEAYAIDDEGSQDPDDAVWAERTEGGFRLLVHVADVAALVEPGSLLDQEA 279
Query: 284 LRRSCTLYLPTETITMLPLELARDGLSLDASNGHAHVSEEENAVLALSFGFTVAEDGSLG 463
+ R LYLP T+ MLP A + L L G +S AL+F V+E+G L
Sbjct: 280 MHRGANLYLPEGTVPMLP-PRATEVLGL----GLQEISP------ALTFALFVSEEGELL 328
Query: 464 DPQVMPSLIR 493
+ ++ PS +R
Sbjct: 329 EERLFPSWVR 338
[51][TOP]
>UniRef100_C7JES0 Ribonuclease R n=8 Tax=Acetobacter pasteurianus RepID=C7JES0_ACEP3
Length = 676
Score = 78.2 bits (191), Expect = 3e-13
Identities = 57/166 (34%), Positives = 78/166 (46%), Gaps = 3/166 (1%)
Frame = +2
Query: 29 YPPTFSPELQEAANGLLSAGPLASEVGPSAC-RTDLRHLDSYAVDSASTFEVDDAMSWE- 202
+PPT E EA ++ A + P+ RTDLRHL +D AS + DDA+ E
Sbjct: 228 HPPTAFSEQAEAEARQIAQQNAALQGAPAPSGRTDLRHLPLITIDDASAHDFDDALWAEQ 287
Query: 203 -ADTGRLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLDASN 379
AD L V IADV+ W+KPG L EA R ++YLP + + MLPL L+ SL
Sbjct: 288 TADGFHLIVAIADVAHWVKPGSALDEEARERGNSIYLPDKVVPMLPLALSAQACSLLPGQ 347
Query: 380 GHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTYE 517
L L + G + Q+ +++ RLTYE
Sbjct: 348 DR----------LCLFADMHITPQGHVVSAQINRGIMQSAARLTYE 383
[52][TOP]
>UniRef100_C7XW39 Ribonuclease R n=1 Tax=Lactobacillus coleohominis 101-4-CHN
RepID=C7XW39_9LACO
Length = 799
Score = 77.0 bits (188), Expect = 7e-13
Identities = 56/169 (33%), Positives = 83/169 (49%), Gaps = 3/169 (1%)
Frame = +2
Query: 20 SHFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAM-S 196
+H P F E E AN + PL R D+ +DS + ++DDA+ +
Sbjct: 239 AHDVPHEFPKEAMEQANKI----PLKVLPEEKQGRKDITKQPLVTIDSIESKDLDDAVVA 294
Query: 197 WEADTGR--LWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLD 370
W+ D G L VHIADVS +++PG PL EA +R ++YL I MLP L
Sbjct: 295 WKMDNGHYHLGVHIADVSHYVQPGTPLDEEAFKRGTSVYLTDRVIPMLPRRL-------- 346
Query: 371 ASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTYE 517
SNG ++ E LA+S + E G++ + PS+I+ R+TY+
Sbjct: 347 -SNGICSLNPNEER-LAMSCEMEIDEQGNILKHDIFPSVIKSHARMTYK 393
[53][TOP]
>UniRef100_A6NVY9 Putative uncharacterized protein n=1 Tax=Bacteroides capillosus
ATCC 29799 RepID=A6NVY9_9BACE
Length = 710
Score = 77.0 bits (188), Expect = 7e-13
Identities = 57/164 (34%), Positives = 79/164 (48%), Gaps = 3/164 (1%)
Frame = +2
Query: 35 PTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSWEADTG 214
P F P + +AA + P E RTDLR+ +D AS+ ++DDA+S E D
Sbjct: 164 PEFPPAVLDAA----ARAPREVEKDALTGRTDLRNRIIITIDGASSKDLDDAVSLERDEQ 219
Query: 215 RLWV---HIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLDASNGH 385
WV HIADVS +++ PL EA R ++Y I MLP+EL+ SL+
Sbjct: 220 GRWVLGVHIADVSHYVQEKSPLDLEAWERGTSVYFADRVIPMLPVELSNGICSLNPGVDR 279
Query: 386 AHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTYE 517
L +S T+A DG D + S+IR R+TYE
Sbjct: 280 ----------LTISCFMTLAADGREEDHTICKSVIRSTERMTYE 313
[54][TOP]
>UniRef100_Q2RLT1 Ribonuclease R n=1 Tax=Moorella thermoacetica ATCC 39073
RepID=Q2RLT1_MOOTA
Length = 770
Score = 76.3 bits (186), Expect = 1e-12
Identities = 57/162 (35%), Positives = 82/162 (50%), Gaps = 3/162 (1%)
Frame = +2
Query: 41 FSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSWEA---DT 211
F PE+ A + P E G A R DLR +D A ++DDA+S E +
Sbjct: 218 FPPEVIREAEEI----PRDLEPGELAKRRDLRDWRLVTIDGADARDLDDAVSLERRPDGS 273
Query: 212 GRLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLDASNGHAH 391
L VHIADVS +++ G PL EA R ++Y I MLP L+ D SL+A
Sbjct: 274 YLLGVHIADVSFYVREGRPLDREAFNRGTSVYFVDRVIPMLPARLSNDICSLNA------ 327
Query: 392 VSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTYE 517
E+ A+ AL T++ G++ D ++ PS+IR R+TY+
Sbjct: 328 -GEDRLAITAL---MTISPAGTVKDYELFPSVIRVRERMTYD 365
[55][TOP]
>UniRef100_C1ZVI5 Exoribonuclease R n=1 Tax=Rhodothermus marinus DSM 4252
RepID=C1ZVI5_RHOMR
Length = 659
Score = 76.3 bits (186), Expect = 1e-12
Identities = 59/164 (35%), Positives = 79/164 (48%), Gaps = 3/164 (1%)
Frame = +2
Query: 35 PTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSWE--AD 208
PTF E+ AA L+ P RTD HL ++ +D AST E+DDA + E A+
Sbjct: 241 PTFPSEVLAAAEALVPFEPTGD-------RTDFTHLPAFHIDDASTREIDDAFTVEPLAE 293
Query: 209 TG-RLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLDASNGH 385
G R+ +H+ADV ++ P + L EA RR T YLPT +I MLP L+ D SL
Sbjct: 294 GGWRIGIHLADVPHFVAPDDVLDREARRRGLTRYLPTGSIPMLPERLSHDLASL------ 347
Query: 386 AHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTYE 517
+ LS TV + D Q++ IR TYE
Sbjct: 348 ----RPDAIRPTLSVVVTVDASEQIRDVQLVRGQIRVAHGFTYE 387
[56][TOP]
>UniRef100_Q1J2E9 Ribonuclease II, VacB-like protein n=1 Tax=Deinococcus geothermalis
DSM 11300 RepID=Q1J2E9_DEIGD
Length = 469
Score = 75.9 bits (185), Expect = 2e-12
Identities = 63/180 (35%), Positives = 82/180 (45%), Gaps = 24/180 (13%)
Frame = +2
Query: 47 PELQEAANGLL--------SAGPLASEVG-------------PSACRTDLRHLDSYAVDS 163
PE EAA+ LL + P A +G P R DL L +YA+D
Sbjct: 39 PETPEAAHALLLRLGLWDEARTPYAERLGAALTPVTLAVPDFPEEARLDLTQLPAYAIDD 98
Query: 164 ASTFEVDDAMSWEADTG---RLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITML 334
+ DDA+ E G RLWVH+ADV+A + G PL EA R TLYLP TI ML
Sbjct: 99 EGNRDPDDAVGIEVLGGGLTRLWVHVADVAALVPAGSPLDEEARARGATLYLPDRTIGML 158
Query: 335 PLELARDGLSLDASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTY 514
P D L A G + ++ ALS + E+G+ +V + + R RLTY
Sbjct: 159 P-----DALVERAGLGLSEITP------ALSIALDLDEEGNADAVEVQLTRV-RVQRLTY 206
[57][TOP]
>UniRef100_A0Q479 Ribonuclease II family protein n=2 Tax=Francisella novicida
RepID=A0Q479_FRATN
Length = 618
Score = 75.9 bits (185), Expect = 2e-12
Identities = 45/133 (33%), Positives = 72/133 (54%), Gaps = 1/133 (0%)
Frame = +2
Query: 122 RTDLRHLDSYAVDSASTFEVDDAMSWEADTGRLWVHIADVSAWLKPGEPLTTEALRRSCT 301
R DL HL +YA+D + + DDA+SW++ ++WVHIAD S+ + G+ + +A R
Sbjct: 232 RVDLTHLKAYAIDDEGSNDPDDAISWDSQKNKMWVHIADPSSSISFGDEIDLQARARGSN 291
Query: 302 LYLPTETITMLPLE-LARDGLSLDASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVM 478
LY+P + + MLP + A+ GL L + A+S GF + E G + D ++
Sbjct: 292 LYVPEQIVMMLPPQATAKLGLGL------------QEVSPAVSVGFRIDEQGDIHDIEIC 339
Query: 479 PSLIRRPWRLTYE 517
S I + R +YE
Sbjct: 340 FSNI-KVTRYSYE 351
[58][TOP]
>UniRef100_B2SE32 Ribonuclease II family protein n=1 Tax=Francisella tularensis
subsp. mediasiatica FSC147 RepID=B2SE32_FRATM
Length = 618
Score = 75.5 bits (184), Expect = 2e-12
Identities = 45/133 (33%), Positives = 72/133 (54%), Gaps = 1/133 (0%)
Frame = +2
Query: 122 RTDLRHLDSYAVDSASTFEVDDAMSWEADTGRLWVHIADVSAWLKPGEPLTTEALRRSCT 301
R DL HL +YA+D + + DDA+SW++ ++WVHIAD S+ + G+ + +A R
Sbjct: 232 RVDLTHLKAYAIDDEGSNDPDDAISWDSQKNKMWVHIADPSSSISFGDEVDLQARARGSN 291
Query: 302 LYLPTETITMLPLE-LARDGLSLDASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVM 478
LY+P + + MLP + A+ GL L + A+S GF + E G + D ++
Sbjct: 292 LYVPEQIVMMLPPQATAKLGLGL------------QEVSPAVSVGFRIDEQGDIHDIEIC 339
Query: 479 PSLIRRPWRLTYE 517
S I + R +YE
Sbjct: 340 FSNI-KVTRYSYE 351
[59][TOP]
>UniRef100_A4IZY2 Ribonuclease II family protein n=1 Tax=Francisella tularensis
subsp. tularensis WY96-3418 RepID=A4IZY2_FRATW
Length = 618
Score = 75.5 bits (184), Expect = 2e-12
Identities = 45/133 (33%), Positives = 72/133 (54%), Gaps = 1/133 (0%)
Frame = +2
Query: 122 RTDLRHLDSYAVDSASTFEVDDAMSWEADTGRLWVHIADVSAWLKPGEPLTTEALRRSCT 301
R DL HL +YA+D + + DDA+SW++ ++WVHIAD S+ + G+ + +A R
Sbjct: 232 RVDLTHLKAYAIDDEGSNDPDDAISWDSQKNKMWVHIADPSSSISFGDEVDLQARARGSN 291
Query: 302 LYLPTETITMLPLE-LARDGLSLDASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVM 478
LY+P + + MLP + A+ GL L + A+S GF + E G + D ++
Sbjct: 292 LYVPEQIVMMLPPQATAKLGLGL------------QEVSPAVSVGFRIDEQGDIHDIEIC 339
Query: 479 PSLIRRPWRLTYE 517
S I + R +YE
Sbjct: 340 FSNI-KVTRYSYE 351
[60][TOP]
>UniRef100_C5S9Y8 Ribonuclease II n=1 Tax=Allochromatium vinosum DSM 180
RepID=C5S9Y8_CHRVI
Length = 608
Score = 75.5 bits (184), Expect = 2e-12
Identities = 51/133 (38%), Positives = 66/133 (49%), Gaps = 1/133 (0%)
Frame = +2
Query: 122 RTDLRHLDSYAVDSASTFEVDDAMSWEADTGRLWVHIADVSAWLKPGEPLTTEALRRSCT 301
R DL HL +YA+D + DDA+S + D RLWVH+ADV A ++P L EA R
Sbjct: 232 RLDLTHLPAYAIDDEGNQDPDDALSLDGD--RLWVHVADVGALVRPDSELEREARARGSN 289
Query: 302 LYLPTETITMLPLELARD-GLSLDASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVM 478
LYLP + MLP + GL L + ALSF DG L D +V
Sbjct: 290 LYLPEGVVNMLPWRVTEHLGLGL------------QEVSPALSFALRCDADGELRDIEVH 337
Query: 479 PSLIRRPWRLTYE 517
+ + R RL+YE
Sbjct: 338 RTWV-RVTRLSYE 349
[61][TOP]
>UniRef100_A4BLZ8 Ribonuclease R n=1 Tax=Nitrococcus mobilis Nb-231
RepID=A4BLZ8_9GAMM
Length = 773
Score = 75.5 bits (184), Expect = 2e-12
Identities = 54/169 (31%), Positives = 87/169 (51%), Gaps = 2/169 (1%)
Frame = +2
Query: 17 ASHFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMS 196
++H P + E++ A G P +++ G R DLRHL +D AS + DDA+
Sbjct: 237 SAHGIPVDWPAEVEAALAGYTDRVPESAKQG----RVDLRHLPLVTIDGASARDFDDAVY 292
Query: 197 WEADTG--RLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLD 370
E T RL+V IADVS +++PG PL EA++R ++Y P + MLP L
Sbjct: 293 AEPMTNGWRLYVAIADVSHYVRPGTPLEREAVKRGNSVYFPRSVVPMLPAIL-------- 344
Query: 371 ASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTYE 517
SNG ++ + L + ++++G+L + +++R RLTYE
Sbjct: 345 -SNGLCSLNPRVDR-LCVVCEMQISQEGALRRSRFYEAVMRSRARLTYE 391
[62][TOP]
>UniRef100_Q14JI5 Ribonuclease II family protein n=3 Tax=Francisella tularensis
subsp. tularensis RepID=Q14JI5_FRAT1
Length = 618
Score = 75.1 bits (183), Expect = 3e-12
Identities = 45/133 (33%), Positives = 72/133 (54%), Gaps = 1/133 (0%)
Frame = +2
Query: 122 RTDLRHLDSYAVDSASTFEVDDAMSWEADTGRLWVHIADVSAWLKPGEPLTTEALRRSCT 301
R DL HL +YA+D + + DDA+SW++ ++WVHIAD S+ + G+ + +A R
Sbjct: 232 RVDLTHLKAYAIDDEGSNDPDDAISWDSKKNKMWVHIADPSSSISFGDEVDLQARARGSN 291
Query: 302 LYLPTETITMLPLE-LARDGLSLDASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVM 478
LY+P + + MLP + A+ GL L + A+S GF + E G + D ++
Sbjct: 292 LYVPEQIVMMLPPQATAKLGLGL------------QEVSPAVSVGFRIDEQGDIHDIEIC 339
Query: 479 PSLIRRPWRLTYE 517
S I + R +YE
Sbjct: 340 FSNI-KVTRYSYE 351
[63][TOP]
>UniRef100_Q9RYD0 Ribonuclease II family protein n=1 Tax=Deinococcus radiodurans
RepID=Q9RYD0_DEIRA
Length = 461
Score = 74.7 bits (182), Expect = 3e-12
Identities = 48/113 (42%), Positives = 63/113 (55%), Gaps = 4/113 (3%)
Frame = +2
Query: 41 FSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSWEADTG-- 214
++ L+ A N + P + P+ R DL HL ++A+D + DDA+ E G
Sbjct: 57 YADRLRAALNAVELPVP---DFDPAEERLDLTHLPTFAIDDEGNQDPDDAVGVEDLGGGL 113
Query: 215 -RLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLEL-ARDGLSL 367
RLWVH+ADV+A + P PL EA R TLYLP TI MLP EL A+ GL L
Sbjct: 114 TRLWVHVADVAALVAPDSPLDLEARARGATLYLPDRTIGMLPDELVAKAGLGL 166
[64][TOP]
>UniRef100_UPI000185547B ribonuclease II family protein n=1 Tax=Francisella novicida FTG
RepID=UPI000185547B
Length = 618
Score = 74.3 bits (181), Expect = 4e-12
Identities = 44/133 (33%), Positives = 72/133 (54%), Gaps = 1/133 (0%)
Frame = +2
Query: 122 RTDLRHLDSYAVDSASTFEVDDAMSWEADTGRLWVHIADVSAWLKPGEPLTTEALRRSCT 301
R DL HL +YA+D + + DDA+SW++ ++WVHIAD S+ + G+ + +A R
Sbjct: 232 RVDLTHLKAYAIDDEGSNDPDDAISWDSQKNKMWVHIADPSSSISFGDEIDLQARARGSN 291
Query: 302 LYLPTETITMLPLE-LARDGLSLDASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVM 478
LY+P + + MLP + A+ GL L + A+S GF + + G + D ++
Sbjct: 292 LYVPEQIVMMLPPQATAKLGLGL------------QEVSPAVSVGFRIDKQGDIHDIEIC 339
Query: 479 PSLIRRPWRLTYE 517
S I + R +YE
Sbjct: 340 FSNI-KVTRYSYE 351
[65][TOP]
>UniRef100_Q7U6W2 Probable ribonuclease II n=1 Tax=Synechococcus sp. WH 8102
RepID=Q7U6W2_SYNPX
Length = 682
Score = 74.3 bits (181), Expect = 4e-12
Identities = 47/134 (35%), Positives = 70/134 (52%), Gaps = 2/134 (1%)
Frame = +2
Query: 122 RTDLRHLDSYAVDSASTFEVDDAMSWEADTGR--LWVHIADVSAWLKPGEPLTTEALRRS 295
R DL Y +D +ST E+DD ++ E G +W+HIAD + ++P PL EA RR+
Sbjct: 286 RVDLTAQRVYTLDDSSTKEIDDGLALEPGDGGPWIWIHIADPARLIEPDSPLDREARRRA 345
Query: 296 CTLYLPTETITMLPLELARDGLSLDASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQV 475
+LYL + MLPL+LA + SL A ALS G + ++G++
Sbjct: 346 TSLYLANGVLPMLPLKLATEIFSLRAG----------QRCPALSVGVLLDDEGAVVASSC 395
Query: 476 MPSLIRRPWRLTYE 517
S ++ +RLTYE
Sbjct: 396 QRSWVQPRYRLTYE 409
[66][TOP]
>UniRef100_Q1WSY6 Ribonuclease R 1 n=1 Tax=Lactobacillus salivarius UCC118
RepID=Q1WSY6_LACS1
Length = 799
Score = 74.3 bits (181), Expect = 4e-12
Identities = 56/174 (32%), Positives = 86/174 (49%), Gaps = 3/174 (1%)
Frame = +2
Query: 5 LELRASHFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVD 184
LE+ H P F E+ E + + +VG R DL D +DS + ++D
Sbjct: 227 LEIVYQHNIPTEFPEEVLEQISKIPDYVTEEEKVG----RVDLTDQDLVTIDSIESKDLD 282
Query: 185 DAMS-WEADTGR--LWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARD 355
DA++ W+ G L VHIADVS ++KP PL EA R ++YL I MLP +L+
Sbjct: 283 DAVNVWKLPNGNYHLGVHIADVSHYVKPKTPLDKEAFERGTSVYLTDRVIPMLPPKLSNG 342
Query: 356 GLSLDASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTYE 517
SL + HV LA++ + DG + + ++ PS+I+ R+TY+
Sbjct: 343 ICSL-----NPHVER-----LAMTCEMEINADGEVVNHKIFPSVIKSTERMTYK 386
[67][TOP]
>UniRef100_C1D045 Putative ribonuclease n=1 Tax=Deinococcus deserti VCD115
RepID=C1D045_DEIDV
Length = 462
Score = 74.3 bits (181), Expect = 4e-12
Identities = 53/135 (39%), Positives = 68/135 (50%), Gaps = 4/135 (2%)
Frame = +2
Query: 122 RTDLRHLDSYAVDSASTFEVDDAMSWEADTG---RLWVHIADVSAWLKPGEPLTTEALRR 292
R DL HL++YA+D + DDA+ E G RLWVH+ADV+A + P L EA R
Sbjct: 82 RLDLTHLEAYAIDDEGNRDPDDAVGIEMLDGGLTRLWVHVADVAALVPPDSALDLEARSR 141
Query: 293 SCTLYLPTETITMLPLELA-RDGLSLDASNGHAHVSEEENAVLALSFGFTVAEDGSLGDP 469
TLYLP +TI MLP EL + GL L + ALS + DG+
Sbjct: 142 GATLYLPDQTIGMLPDELVEKTGLGLHPTTP------------ALSIALDLDHDGNADAV 189
Query: 470 QVMPSLIRRPWRLTY 514
V + +R RLTY
Sbjct: 190 DVHLTTVRVE-RLTY 203
[68][TOP]
>UniRef100_C2EG81 Ribonuclease R1 n=1 Tax=Lactobacillus salivarius ATCC 11741
RepID=C2EG81_9LACO
Length = 799
Score = 74.3 bits (181), Expect = 4e-12
Identities = 56/174 (32%), Positives = 86/174 (49%), Gaps = 3/174 (1%)
Frame = +2
Query: 5 LELRASHFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVD 184
LE+ H P F E+ E + + +VG R DL D +DS + ++D
Sbjct: 227 LEIVYQHNIPTEFPEEVLEQISKIPDYVTEEEKVG----RVDLTDQDLVTIDSIESKDLD 282
Query: 185 DAMS-WEADTGR--LWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARD 355
DA++ W+ G L VHIADVS ++KP PL EA R ++YL I MLP +L+
Sbjct: 283 DAVNVWKLPNGNYHLGVHIADVSHYVKPKTPLDKEAFERGTSVYLTDRVIPMLPPKLSNG 342
Query: 356 GLSLDASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTYE 517
SL + HV LA++ + DG + + ++ PS+I+ R+TY+
Sbjct: 343 ICSL-----NPHVER-----LAMTCEMEINADGEVVNHKIFPSVIKSTERMTYK 386
[69][TOP]
>UniRef100_A7YRE1 Putative uncharacterized protein n=1 Tax=Francisella tularensis
subsp. holarctica FSC022 RepID=A7YRE1_FRATU
Length = 618
Score = 74.3 bits (181), Expect = 4e-12
Identities = 44/133 (33%), Positives = 72/133 (54%), Gaps = 1/133 (0%)
Frame = +2
Query: 122 RTDLRHLDSYAVDSASTFEVDDAMSWEADTGRLWVHIADVSAWLKPGEPLTTEALRRSCT 301
R DL HL +YA+D + + DDA+SW++ ++WVHI+D S+ + G+ + +A R
Sbjct: 232 RVDLTHLKAYAIDDEGSNDPDDAISWDSQKNKMWVHISDPSSSISFGDEVDLQARARGSN 291
Query: 302 LYLPTETITMLPLE-LARDGLSLDASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVM 478
LY+P + + MLP + A+ GL L + A+S GF + E G + D ++
Sbjct: 292 LYVPEQIVMMLPPQATAKLGLGL------------QEVSPAVSVGFRIDEQGDIHDIEIC 339
Query: 479 PSLIRRPWRLTYE 517
S I + R +YE
Sbjct: 340 FSNI-KVTRYSYE 351
[70][TOP]
>UniRef100_A7JFK7 Ribonuclease II family protein n=1 Tax=Francisella novicida
GA99-3549 RepID=A7JFK7_FRANO
Length = 618
Score = 74.3 bits (181), Expect = 4e-12
Identities = 44/133 (33%), Positives = 72/133 (54%), Gaps = 1/133 (0%)
Frame = +2
Query: 122 RTDLRHLDSYAVDSASTFEVDDAMSWEADTGRLWVHIADVSAWLKPGEPLTTEALRRSCT 301
R DL HL +YA+D + + DDA+SW++ ++WVHIAD S+ + G+ + +A R
Sbjct: 232 RVDLTHLKAYAIDDEGSKDPDDAISWDSQKNKMWVHIADPSSSISFGDEIDLQARARGSN 291
Query: 302 LYLPTETITMLPLE-LARDGLSLDASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVM 478
LY+P + + MLP + A+ GL L + A+S GF + + G + D ++
Sbjct: 292 LYVPEQIVMMLPPQATAKLGLGL------------QEVSPAVSVGFRIDKQGDIHDIEIC 339
Query: 479 PSLIRRPWRLTYE 517
S I + R +YE
Sbjct: 340 FSNI-KVTRYSYE 351
[71][TOP]
>UniRef100_A7N9H4 Ribonuclease II (RNB-like) family protein n=4 Tax=Francisella
tularensis subsp. holarctica RepID=A7N9H4_FRATF
Length = 616
Score = 74.3 bits (181), Expect = 4e-12
Identities = 44/133 (33%), Positives = 72/133 (54%), Gaps = 1/133 (0%)
Frame = +2
Query: 122 RTDLRHLDSYAVDSASTFEVDDAMSWEADTGRLWVHIADVSAWLKPGEPLTTEALRRSCT 301
R DL HL +YA+D + + DDA+SW++ ++WVHI+D S+ + G+ + +A R
Sbjct: 232 RVDLTHLKAYAIDDEGSNDPDDAISWDSQKNKMWVHISDPSSSISFGDEVDLQARARGSN 291
Query: 302 LYLPTETITMLPLE-LARDGLSLDASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVM 478
LY+P + + MLP + A+ GL L + A+S GF + E G + D ++
Sbjct: 292 LYVPEQIVMMLPPQATAKLGLGL------------QEVSPAVSVGFRIDEQGDIHDIEIC 339
Query: 479 PSLIRRPWRLTYE 517
S I + R +YE
Sbjct: 340 FSNI-KVTRYSYE 351
[72][TOP]
>UniRef100_B9T6X7 Ribonuclease II, putative n=1 Tax=Ricinus communis
RepID=B9T6X7_RICCO
Length = 731
Score = 74.3 bits (181), Expect = 4e-12
Identities = 47/124 (37%), Positives = 67/124 (54%), Gaps = 3/124 (2%)
Frame = +2
Query: 5 LELRASHFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVD 184
L +R H S E+ AA LL L S R DL HL YA+D E+D
Sbjct: 359 LNIRTDH------SDEILSAAENLL----LESVDPDKIHRKDLTHLKVYAIDVDEADELD 408
Query: 185 DAMS-WEADTGRL--WVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARD 355
DA+S + GR+ W+H+AD +++PG + EA++R +++LPT T M P +LA D
Sbjct: 409 DALSATKLQDGRIKIWIHVADPGRYVQPGSKIDREAMKRGTSVFLPTATYPMFPEKLAMD 468
Query: 356 GLSL 367
G+SL
Sbjct: 469 GMSL 472
[73][TOP]
>UniRef100_A5CVS5 Ribonuclease II family protein n=1 Tax=Candidatus Vesicomyosocius
okutanii HA RepID=A5CVS5_VESOH
Length = 601
Score = 73.9 bits (180), Expect = 6e-12
Identities = 50/157 (31%), Positives = 81/157 (51%)
Frame = +2
Query: 23 HFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSWE 202
+++ P F+P N +L + + + R DL HL SYA+D+ + + DDA+S +
Sbjct: 190 NYFKPGFNP--YPTRNNILKDDQIDASI-VKVDRVDLTHLSSYAIDNFDSNDADDAISVD 246
Query: 203 ADTGRLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLDASNG 382
D ++W+HIADVS G L + A +R+ LYLP + I MLP+ + +
Sbjct: 247 GD--KIWIHIADVSLIATAGSELDSYAQKRASNLYLPEQIIHMLPISVTKMCALGLTETS 304
Query: 383 HAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIR 493
H ALS GFT+ E G + + +V+ S+I+
Sbjct: 305 H-----------ALSIGFTL-ELGEINNVEVVRSIIK 329
[74][TOP]
>UniRef100_C8R2V9 Exoribonuclease II n=1 Tax=Desulfurivibrio alkaliphilus AHT2
RepID=C8R2V9_9DELT
Length = 682
Score = 73.6 bits (179), Expect = 8e-12
Identities = 48/134 (35%), Positives = 69/134 (51%), Gaps = 2/134 (1%)
Frame = +2
Query: 122 RTDLRHLDSYAVDSASTFEVDDAMSWE--ADTGRLWVHIADVSAWLKPGEPLTTEALRRS 295
R DLRHL +D ST ++DDA+ E + + +HIADV+ ++KPG L A+ R
Sbjct: 293 RVDLRHLPVLTIDGKSTRDLDDALHLERQGENFVVGIHIADVAHYVKPGSLLFKTAVERV 352
Query: 296 CTLYLPTETITMLPLELARDGLSLDASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQV 475
+LY P + MLP L+ D SL A A+SF T+ DG + ++
Sbjct: 353 TSLYFPEGQVPMLPPRLSEDLCSLVAGRDRP----------AMSFLVTLTPDGDIVSSRI 402
Query: 476 MPSLIRRPWRLTYE 517
+ S+IR RL YE
Sbjct: 403 VASVIRVARRLDYE 416
[75][TOP]
>UniRef100_C2F2N3 Exoribonuclease R n=2 Tax=Lactobacillus reuteri RepID=C2F2N3_LACRE
Length = 801
Score = 73.6 bits (179), Expect = 8e-12
Identities = 52/169 (30%), Positives = 84/169 (49%), Gaps = 3/169 (1%)
Frame = +2
Query: 20 SHFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAM-S 196
+H P F E+ E AN + PL R D+ +D+ + ++DDA+ +
Sbjct: 226 AHDVPHEFPKEVMEQANKI----PLHVLPEEKKGRVDITDQPLVTIDAIESKDLDDAVVA 281
Query: 197 WEADTGR--LWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLD 370
W+ D G L VHIADV+ ++KPG PL EA +R ++YL + MLP L
Sbjct: 282 WKMDNGHYHLGVHIADVTHYVKPGTPLDQEAFKRGTSVYLTDRVVPMLPKRL-------- 333
Query: 371 ASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTYE 517
SNG ++ E LA+S + E G + + ++ S+++ R+TY+
Sbjct: 334 -SNGICSLNPNEER-LAMSCEMEIDEQGKIVNHRIFQSVMKSHARMTYK 380
[76][TOP]
>UniRef100_A5VII9 Ribonuclease R n=4 Tax=Lactobacillus reuteri RepID=A5VII9_LACRD
Length = 801
Score = 73.6 bits (179), Expect = 8e-12
Identities = 52/169 (30%), Positives = 84/169 (49%), Gaps = 3/169 (1%)
Frame = +2
Query: 20 SHFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAM-S 196
+H P F E+ E AN + PL R D+ +D+ + ++DDA+ +
Sbjct: 226 AHDVPHEFPKEVMEQANKI----PLHVLPEEKKGRVDITDQPLVTIDAIESKDLDDAVVA 281
Query: 197 WEADTGR--LWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLD 370
W+ D G L VHIADV+ ++KPG PL EA +R ++YL + MLP L
Sbjct: 282 WKMDNGHYHLGVHIADVTHYVKPGTPLDQEAFKRGTSVYLTDRVVPMLPKRL-------- 333
Query: 371 ASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTYE 517
SNG ++ E LA+S + E G + + ++ S+++ R+TY+
Sbjct: 334 -SNGICSLNPNEER-LAMSCEMEIDEQGKIVNHRIFQSVMKSHARMTYK 380
[77][TOP]
>UniRef100_B3XQY8 Ribonuclease R n=1 Tax=Lactobacillus reuteri 100-23
RepID=B3XQY8_LACRE
Length = 801
Score = 73.6 bits (179), Expect = 8e-12
Identities = 52/169 (30%), Positives = 84/169 (49%), Gaps = 3/169 (1%)
Frame = +2
Query: 20 SHFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAM-S 196
+H P F E+ E AN + PL R D+ +D+ + ++DDA+ +
Sbjct: 226 AHDVPHEFPKEVMEQANKI----PLHVLPEEKKGRVDITDQPLVTIDAIESKDLDDAVVA 281
Query: 197 WEADTGR--LWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLD 370
W+ D G L VHIADV+ ++KPG PL EA +R ++YL + MLP L
Sbjct: 282 WKMDNGHYHLGVHIADVTHYVKPGTPLDQEAFKRGTSVYLTDRVVPMLPKRL-------- 333
Query: 371 ASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTYE 517
SNG ++ E LA+S + E G + + ++ S+++ R+TY+
Sbjct: 334 -SNGICSLNPNEER-LAMSCEMEIDEQGKIVNHRIFQSVMKSHARMTYK 380
[78][TOP]
>UniRef100_C6DE25 Ribonuclease R n=1 Tax=Pectobacterium carotovorum subsp.
carotovorum PC1 RepID=C6DE25_PECCP
Length = 818
Score = 73.2 bits (178), Expect = 1e-11
Identities = 53/168 (31%), Positives = 81/168 (48%), Gaps = 3/168 (1%)
Frame = +2
Query: 20 SHFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSW 199
+H P T+ P+++E L P A++ G R DLR L +D + DDA+
Sbjct: 230 THDIPHTWPPKVEEQVKDLAEEVPEAAKKG----RVDLRKLPLVTIDGEDARDFDDAVYC 285
Query: 200 EADTG---RLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLD 370
E G RLWV IADVS +++P PL EA R ++Y P++ + MLP L
Sbjct: 286 EKKRGGGWRLWVAIADVSYYVRPNTPLDHEARARGTSVYFPSQVVPMLPEVL-------- 337
Query: 371 ASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTY 514
SNG ++ + + L + TV+ G L + +++ RLTY
Sbjct: 338 -SNGLCSLNPQVDR-LCMVCEMTVSAQGKLSSYKFYEAVMSSHARLTY 383
[79][TOP]
>UniRef100_A5IXZ7 Ribonuclease R (VacB-like (Shigella flexneri)ribonuclease II) n=1
Tax=Mycoplasma agalactiae PG2 RepID=A5IXZ7_MYCAP
Length = 729
Score = 73.2 bits (178), Expect = 1e-11
Identities = 49/135 (36%), Positives = 76/135 (56%), Gaps = 3/135 (2%)
Frame = +2
Query: 122 RTDLRHLDSYAVDSASTFEVDDAMSW---EADTGRLWVHIADVSAWLKPGEPLTTEALRR 292
RTDLR+ +D +ST + DDA+S + +T L VHIADV+ ++K PL EAL+R
Sbjct: 249 RTDLRNDLVVTIDGSSTKDFDDAISVVKIDENTYELGVHIADVAYYVKENTPLDDEALKR 308
Query: 293 SCTLYLPTETITMLPLELARDGLSLDASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQ 472
++YL E + MLP +L SNG ++ E L +S + + G + +
Sbjct: 309 GTSIYLLNEVVPMLPFKL---------SNGICSLNPNEER-LTISCITKINKLGQSIETK 358
Query: 473 VMPSLIRRPWRLTYE 517
++PS+I+ +RLTYE
Sbjct: 359 IVPSVIKSKYRLTYE 373
[80][TOP]
>UniRef100_Q9LZA0 Ribonuclease II-like protein n=1 Tax=Arabidopsis thaliana
RepID=Q9LZA0_ARATH
Length = 782
Score = 73.2 bits (178), Expect = 1e-11
Identities = 45/115 (39%), Positives = 66/115 (57%), Gaps = 3/115 (2%)
Frame = +2
Query: 32 PPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMS-WEAD 208
P S + EAA LLS +S++ + R DL HL YA+D E+DDA+S
Sbjct: 373 PTHHSEAITEAAEALLSE---SSDID-AVRRIDLTHLKVYAIDVDEADELDDALSATRLQ 428
Query: 209 TGRL--WVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSL 367
GR+ W+H+AD + ++ PG + EA RR +++LPT T M P +LA +G+SL
Sbjct: 429 DGRIKIWIHVADPARYVTPGSKVDREARRRGTSVFLPTATYPMFPEKLAMEGMSL 483
[81][TOP]
>UniRef100_C1EB65 Ribonuclease n=1 Tax=Micromonas sp. RCC299 RepID=C1EB65_9CHLO
Length = 851
Score = 73.2 bits (178), Expect = 1e-11
Identities = 51/133 (38%), Positives = 64/133 (48%), Gaps = 6/133 (4%)
Frame = +2
Query: 17 ASHFYPPTFSPELQEAANGLLSAGPLASEVGPSA---CRTDLRHLDSYAVDSASTFEVDD 187
A H P F ++ L A LA+E P A R DL L YA+D T EVDD
Sbjct: 382 ARHDVPTAF------LSDALEHAARLAAEAPPDADGEIRKDLTRLRCYAIDGEGTVEVDD 435
Query: 188 AMSWEADTG---RLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDG 358
A+S EA G R+WVH+AD + W+ G PL EA R + Y P + M PL +A
Sbjct: 436 AVSAEALPGGKIRVWVHVADATRWVGLGTPLEAEAESRGASGYHPRGVLPMFPLPVAAGL 495
Query: 359 LSLDASNGHAHVS 397
+SL VS
Sbjct: 496 MSLTPGEPKCAVS 508
[82][TOP]
>UniRef100_Q74D34 Ribonuclease R, putative n=1 Tax=Geobacter sulfurreducens
RepID=Q74D34_GEOSL
Length = 763
Score = 72.8 bits (177), Expect = 1e-11
Identities = 51/139 (36%), Positives = 68/139 (48%), Gaps = 3/139 (2%)
Frame = +2
Query: 107 GPSACRTDLRHLDSYAVDSASTFEVDDAMSWEADTG---RLWVHIADVSAWLKPGEPLTT 277
G A R DLR + +D + + DDA+S + + G RLWV IADVS ++KPG L
Sbjct: 238 GDVAKRVDLRERLTVTIDGETARDFDDAVSVQREKGGDIRLWVSIADVSHYVKPGSALDR 297
Query: 278 EALRRSCTLYLPTETITMLPLELARDGLSLDASNGHAHVSEEENAVLALSFGFTVAEDGS 457
EA R ++Y P I MLP EL+ SL+ + E L FT G+
Sbjct: 298 EAYLRGTSVYFPDRCIPMLPEELSNGICSLN--------PQVERLTLTAEMLFT--RSGA 347
Query: 458 LGDPQVMPSLIRRPWRLTY 514
+ PS+IR RLTY
Sbjct: 348 IKSSSFYPSVIRSAARLTY 366
[83][TOP]
>UniRef100_A6TH95 RNase R n=1 Tax=Klebsiella pneumoniae subsp. pneumoniae MGH 78578
RepID=A6TH95_KLEP7
Length = 810
Score = 72.8 bits (177), Expect = 1e-11
Identities = 52/168 (30%), Positives = 82/168 (48%), Gaps = 3/168 (1%)
Frame = +2
Query: 20 SHFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSW 199
+H P + P +++ +GL P ++VG R DLR L +D + DDA+
Sbjct: 230 THEIPYVWPPAVEKQVSGLKEQVPEEAKVG----RVDLRSLPLVTIDGEDARDFDDAVYC 285
Query: 200 EADTG---RLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLD 370
E G RLWV IADVS +++PG PL EA R ++Y P++ + MLP L
Sbjct: 286 EKKRGGGWRLWVAIADVSYYVRPGTPLDAEARSRGTSVYFPSQVVPMLPEVL-------- 337
Query: 371 ASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTY 514
SNG ++ + + L + T++ G L + +++ RLTY
Sbjct: 338 -SNGLCSLNPQVDR-LCMVCEMTISSKGRLTGYKFYEAVMSSHARLTY 383
[84][TOP]
>UniRef100_A2C9R3 Probable ribonuclease II n=1 Tax=Prochlorococcus marinus str. MIT
9303 RepID=A2C9R3_PROM3
Length = 683
Score = 72.4 bits (176), Expect = 2e-11
Identities = 55/162 (33%), Positives = 79/162 (48%), Gaps = 2/162 (1%)
Frame = +2
Query: 38 TFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSWEA--DT 211
+F +Q A+ LL+ S + R DL L +Y +D T E+DDA+S ++
Sbjct: 259 SFEGSVQAQADQLLNKFEQLSFASDDS-RLDLSDLRTYTLDDHQTQEIDDAISLQSVDQD 317
Query: 212 GRLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLDASNGHAH 391
+W+HIAD + + PL EA R+ +LYL MLPL +A + LSL A A
Sbjct: 318 SWVWIHIADPARLIPVDSPLDLEARARATSLYLADGLRPMLPLSVAAEVLSLRAGRRCA- 376
Query: 392 VSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTYE 517
ALS + E G + D +V + IR +RLTYE
Sbjct: 377 ---------ALSVAVVLDESGCIADTRVCRTWIRPCYRLTYE 409
[85][TOP]
>UniRef100_C8P6W3 Ribonuclease R n=1 Tax=Lactobacillus antri DSM 16041
RepID=C8P6W3_9LACO
Length = 786
Score = 72.4 bits (176), Expect = 2e-11
Identities = 52/169 (30%), Positives = 84/169 (49%), Gaps = 3/169 (1%)
Frame = +2
Query: 20 SHFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAM-S 196
+H P F E + AN + PL R D+ + +D+ + ++DDA+ +
Sbjct: 227 AHDVPHEFPKEAMDQANQI----PLHVLPEEKKGRKDITNQPLVTIDAIESKDLDDAVVA 282
Query: 197 WEADTGR--LWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLD 370
W+ D G L VHIADVS +++PG PL EA +R ++YL + MLP L
Sbjct: 283 WKMDNGHYHLGVHIADVSHYVQPGTPLDKEAFKRGTSVYLTDRVVPMLPKRL-------- 334
Query: 371 ASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTYE 517
SNG ++ E LA+S + E G + ++ PS+++ R+TY+
Sbjct: 335 -SNGICSLNPGEER-LAMSCEMEIDEQGRVVKHRIFPSVMKSHARMTYK 381
[86][TOP]
>UniRef100_C6PDU8 Ribonuclease R n=1 Tax=Thermoanaerobacterium thermosaccharolyticum
DSM 571 RepID=C6PDU8_CLOTS
Length = 719
Score = 72.4 bits (176), Expect = 2e-11
Identities = 49/134 (36%), Positives = 73/134 (54%), Gaps = 3/134 (2%)
Frame = +2
Query: 122 RTDLRHLDSYAVDSASTFEVDDAMSWEA-DTGR--LWVHIADVSAWLKPGEPLTTEALRR 292
RTDLRHL+ +D ++DDA++ E D+G L+V IADVS ++K G L EAL R
Sbjct: 244 RTDLRHLNIVTIDGEDAKDLDDAVAVEKLDSGDYILYVSIADVSHYVKEGSELDKEALNR 303
Query: 293 SCTLYLPTETITMLPLELARDGLSLDASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQ 472
C++Y I MLP L SNG ++ E+ L L+ + ++G++ D
Sbjct: 304 GCSVYFIDRVIPMLPHRL---------SNGICSLNPSEDR-LTLTVKMKIDKNGNVVDHD 353
Query: 473 VMPSLIRRPWRLTY 514
+ S+IR R+TY
Sbjct: 354 IFESVIRSKERMTY 367
[87][TOP]
>UniRef100_Q9PK00 Ribonuclease R n=1 Tax=Chlamydia muridarum RepID=RNR_CHLMU
Length = 692
Score = 72.4 bits (176), Expect = 2e-11
Identities = 49/135 (36%), Positives = 73/135 (54%), Gaps = 3/135 (2%)
Frame = +2
Query: 122 RTDLRHLDSYAVDSASTFEVDDAMSWEADTGR---LWVHIADVSAWLKPGEPLTTEALRR 292
R DLR L + +DSAS + DDA+S D L VHIADVS ++ P L EA +R
Sbjct: 204 RKDLRDLLCFTIDSASAKDFDDAVSLTYDHEGNYILGVHIADVSHYVTPNSALDQEAAKR 263
Query: 293 SCTLYLPTETITMLPLELARDGLSLDASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQ 472
++Y P + I MLP L+ + SL + LA+S T +++G L D +
Sbjct: 264 CNSIYFPGKVIPMLPSALSDNLCSLKPNVDR----------LAVSVFMTFSKEGFLSDYR 313
Query: 473 VMPSLIRRPWRLTYE 517
++ S+IR +R+TY+
Sbjct: 314 ILRSVIRSKYRMTYD 328
[88][TOP]
>UniRef100_Q39VV4 3'-5' exoribonuclease, VacB and RNase II:Ribonuclease R n=1
Tax=Geobacter metallireducens GS-15 RepID=Q39VV4_GEOMG
Length = 759
Score = 72.0 bits (175), Expect = 2e-11
Identities = 55/169 (32%), Positives = 78/169 (46%), Gaps = 3/169 (1%)
Frame = +2
Query: 17 ASHFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMS 196
A H P F E+ + A + P A RTDLR + + +D + + DDA++
Sbjct: 212 AKHGLPFEFPAEVLDEARAV----PQAIGEKDLQGRTDLREIVTVTIDGETARDFDDAVA 267
Query: 197 WEADTG---RLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSL 367
+ G RLWV IADVS ++KP PL EA R ++Y P I MLP EL+ SL
Sbjct: 268 VRKERGGNIRLWVSIADVSHYVKPDAPLDREAYLRGTSVYFPDRCIPMLPEELSNGICSL 327
Query: 368 DASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTY 514
+ E + FT G++ + PS+I+ RLTY
Sbjct: 328 N--------PRVERLTMTAEMLFT--RSGTMKEATFYPSVIKSDARLTY 366
[89][TOP]
>UniRef100_B9M5H5 Ribonuclease R n=1 Tax=Geobacter sp. FRC-32 RepID=B9M5H5_GEOSF
Length = 758
Score = 72.0 bits (175), Expect = 2e-11
Identities = 55/167 (32%), Positives = 80/167 (47%), Gaps = 3/167 (1%)
Frame = +2
Query: 23 HFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSWE 202
H P F P + +AA + P + RTDLR + +D + + DDA+S +
Sbjct: 214 HELPDVFPPSVLKAARAV----PETIQDSELEGRTDLRGQLTVTIDGETAKDFDDAVSVK 269
Query: 203 ADTG---RLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLDA 373
+ RLWV IADVS ++KPG PL EA R ++Y P I MLP EL
Sbjct: 270 KEGKGAIRLWVSIADVSHYVKPGSPLDKEAYLRGTSVYFPDRCIPMLPEEL--------- 320
Query: 374 SNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTY 514
SNG ++ + + L ++ G++ + PS+IR RLTY
Sbjct: 321 SNGICSLNPQVDR-LTMTAEMLFDGSGTILEAAFYPSVIRSVARLTY 366
[90][TOP]
>UniRef100_C2ETG9 Exoribonuclease R n=1 Tax=Lactobacillus vaginalis ATCC 49540
RepID=C2ETG9_9LACO
Length = 801
Score = 72.0 bits (175), Expect = 2e-11
Identities = 52/169 (30%), Positives = 83/169 (49%), Gaps = 3/169 (1%)
Frame = +2
Query: 20 SHFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAM-S 196
+H P F E+ + AN + PL R D+ +D+ + ++DDA+ +
Sbjct: 226 AHDVPHEFPQEVMDEANKI----PLKVLPEEKKGRVDITDQPLVTIDAIESKDLDDAVVA 281
Query: 197 WEADTGR--LWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLD 370
W+ D G L VHIADVS ++KPG L EA +R ++YL + MLP L
Sbjct: 282 WKMDNGHYHLGVHIADVSHYVKPGSALDKEAFKRGTSVYLTDRVVPMLPKRL-------- 333
Query: 371 ASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTYE 517
SNG ++ E L++S + E G + ++ PS++R R+TY+
Sbjct: 334 -SNGICSLNPGEER-LSMSCEMEIDEQGRIIKHRIFPSVMRSHARMTYK 380
[91][TOP]
>UniRef100_Q7V7K3 Probable ribonuclease II n=1 Tax=Prochlorococcus marinus str. MIT
9313 RepID=Q7V7K3_PROMM
Length = 688
Score = 71.6 bits (174), Expect = 3e-11
Identities = 56/162 (34%), Positives = 78/162 (48%), Gaps = 2/162 (1%)
Frame = +2
Query: 38 TFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSWEA--DT 211
+F +Q A+ LL+ S G R DL L +Y +D T E+DDA+S +
Sbjct: 264 SFEGSVQAQADQLLNKFEQLS-FGGDDNRLDLSDLRTYTLDDHQTQEIDDAISLQCVDQD 322
Query: 212 GRLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLDASNGHAH 391
+W+HIAD + + PL EA R+ +LYL TMLPL +A + LSL A A
Sbjct: 323 NWIWIHIADPARLIPVDSPLDLEARARATSLYLADGLRTMLPLSVAVEVLSLRAGRRCA- 381
Query: 392 VSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTYE 517
ALS + E G + +V + IR +RLTYE
Sbjct: 382 ---------ALSVAVVLDESGCIAGTRVCRTWIRPCYRLTYE 414
[92][TOP]
>UniRef100_Q6D126 Ribonuclease R n=1 Tax=Pectobacterium atrosepticum
RepID=Q6D126_ERWCT
Length = 818
Score = 71.6 bits (174), Expect = 3e-11
Identities = 52/168 (30%), Positives = 81/168 (48%), Gaps = 3/168 (1%)
Frame = +2
Query: 20 SHFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSW 199
+H P T+ P++++ L P A++ G R DLR L +D + DDA+
Sbjct: 230 THDIPHTWPPKVEDQVKDLSEEVPEAAKKG----RVDLRKLPLVTIDGEDARDFDDAVYC 285
Query: 200 EADTG---RLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLD 370
E G RLWV IADVS +++P PL EA R ++Y P++ + MLP L
Sbjct: 286 EPKRGGGWRLWVAIADVSYYVRPNTPLDHEARARGTSVYFPSQVVPMLPEVL-------- 337
Query: 371 ASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTY 514
SNG ++ + + L + TV+ G L + +++ RLTY
Sbjct: 338 -SNGLCSLNPQVDR-LCMVCEMTVSTQGKLSSYKFYEAVMSSHARLTY 383
[93][TOP]
>UniRef100_B8CYF3 Ribonuclease R n=1 Tax=Halothermothrix orenii H 168
RepID=B8CYF3_HALOH
Length = 706
Score = 71.6 bits (174), Expect = 3e-11
Identities = 54/165 (32%), Positives = 80/165 (48%), Gaps = 3/165 (1%)
Frame = +2
Query: 32 PPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSWEA-- 205
P F E+ E A + PL G R DLR + +D A ++DDA+S E
Sbjct: 218 PQEFDYEVLEEAKSI----PLEISKGDLKGRRDLRAMPMVTIDGADAKDLDDAVSIEEVD 273
Query: 206 -DTGRLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLDASNG 382
+ RL VHIADVS ++K L EAL+R ++YL I MLP L SNG
Sbjct: 274 DNQVRLGVHIADVSHYVKEDSALDREALKRGTSIYLVDRVIPMLPERL---------SNG 324
Query: 383 HAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTYE 517
++ ++ + F E L + +++PS+I+ +RLTY+
Sbjct: 325 ICSLNPNQDRLTMSVFITYQLEPFKLMEYEIVPSVIKTNYRLTYD 369
[94][TOP]
>UniRef100_A2C262 Probable ribonuclease II n=1 Tax=Prochlorococcus marinus str.
NATL1A RepID=A2C262_PROM1
Length = 424
Score = 71.6 bits (174), Expect = 3e-11
Identities = 43/131 (32%), Positives = 74/131 (56%), Gaps = 2/131 (1%)
Frame = +2
Query: 128 DLRHLDSYAVDSASTFEVDDAMSWEADTG--RLWVHIADVSAWLKPGEPLTTEALRRSCT 301
DL HL +Y +D + T E+DDA+S E +G +LW+HIA +++++ + +A + T
Sbjct: 29 DLSHLKTYTIDDSKTVEIDDAISLEQVSGQNKLWIHIASPASYIEYQSGIDEKARKLVST 88
Query: 302 LYLPTETITMLPLELARDGLSLDASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMP 481
+YL T T MLP L + SL S++E +LS G + +DG++ +++
Sbjct: 89 VYLSTNTYYMLPEALINNVFSL---------SDKEKRE-SLSLGVILNDDGTISSTEIVQ 138
Query: 482 SLIRRPWRLTY 514
SLI+ +RL +
Sbjct: 139 SLIQVDYRLDF 149
[95][TOP]
>UniRef100_B7A7Y9 Ribonuclease II n=1 Tax=Thermus aquaticus Y51MC23
RepID=B7A7Y9_THEAQ
Length = 598
Score = 71.6 bits (174), Expect = 3e-11
Identities = 58/160 (36%), Positives = 77/160 (48%), Gaps = 22/160 (13%)
Frame = +2
Query: 47 PELQEAANGLL-------SAGPLASEVG-------------PSACRTDLRHLDSYAVDSA 166
PE EAA+GLL P +G P R DL HL ++A+D
Sbjct: 178 PETPEAAHGLLLRLGLWRRENPHPRRLGLPLAPPDLPVPPLPEEERVDLTHLPAFAIDDE 237
Query: 167 STFEVDDAMSWEA--DTGRLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPL 340
+ + DDA+ E + RL+VH+ADV+A + PG PL EALRR LYLP + MLPL
Sbjct: 238 GSQDPDDALYAERVEEGFRLFVHVADVAALVGPGSPLDGEALRRGANLYLPEGAVPMLPL 297
Query: 341 ELARDGLSLDASNGHAHVSEEENAVLALSFGFTVAEDGSL 460
+ + L L G VS AL+F V+ +G L
Sbjct: 298 AVT-EALGL----GLKEVSP------ALTFELLVSPEGEL 326
[96][TOP]
>UniRef100_B1X3I1 Probable ribonuclease II n=1 Tax=Paulinella chromatophora
RepID=B1X3I1_PAUCH
Length = 476
Score = 71.6 bits (174), Expect = 3e-11
Identities = 58/168 (34%), Positives = 83/168 (49%), Gaps = 9/168 (5%)
Frame = +2
Query: 41 FSPELQEAANGLLSAGPLASEVGPS-ACRTDLRHLDSYAVDSASTFEVDDAMSWEADTGR 217
F+ + AN L + LA+E PS R DL L + +D T E+DDA+S+E D
Sbjct: 51 FNQKQMAEANRLCA---LANEAQPSDEQRLDLTGLRCFTIDDPGTQELDDALSYEQDQDG 107
Query: 218 ---LWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLDASNGHA 388
+W+HIAD + PG L EA +R+ +LYL + + M P+ELA LSL A
Sbjct: 108 NEWIWIHIADPDRLVFPGSDLDLEAKQRATSLYLASGGLPMFPMELAAGSLSLKQGQRCA 167
Query: 389 HVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPW-----RLTYE 517
VS A+L + G +V+ +++R W RLTYE
Sbjct: 168 AVS---TAILLDNCG------------EVVKIILQRSWIYPTYRLTYE 200
[97][TOP]
>UniRef100_Q18FH8 Ribonuclease R homolog n=2 Tax=Halobacteriaceae RepID=Q18FH8_HALWD
Length = 442
Score = 71.6 bits (174), Expect = 3e-11
Identities = 52/134 (38%), Positives = 66/134 (49%), Gaps = 3/134 (2%)
Frame = +2
Query: 122 RTDLRHLDSYAVDSASTFEVDDAMSWEA--DTGRLWVHIADVSAWLKPGEPLTTEALRRS 295
RTDLR L ++ D + DDA+S +T LWVHIADVS ++ P + TEA+ R
Sbjct: 74 RTDLRELTTWTTDPVDAQDFDDALSIRENDETYTLWVHIADVSHYVHPDSEMWTEAVERG 133
Query: 296 CTLYLPTETITMLPLELARDGLSLDASNGH-AHVSEEENAVLALSFGFTVAEDGSLGDPQ 472
T+YLP TI MLP LA SL AH E E + LSF +
Sbjct: 134 NTVYLPAYTIHMLPPVLAETVCSLVPEKDRLAHTVEMEISKETLSF----------EELD 183
Query: 473 VMPSLIRRPWRLTY 514
+ S+I RLTY
Sbjct: 184 IYKSVIHSDARLTY 197
[98][TOP]
>UniRef100_Q1MTN7 Exoribonuclease II, mitochondrial n=1 Tax=Schizosaccharomyces pombe
RepID=RPM1_SCHPO
Length = 957
Score = 71.6 bits (174), Expect = 3e-11
Identities = 46/126 (36%), Positives = 71/126 (56%), Gaps = 3/126 (2%)
Frame = +2
Query: 122 RTDLRHLDSYAVDSASTFEVDDAMSWE---ADTGRLWVHIADVSAWLKPGEPLTTEALRR 292
R DLRHL ++A DS+ST E+DDA+S E L +H+A+ ++ + PL T A R
Sbjct: 503 RVDLRHLKAFAFDSSSTKEIDDAISVEELGMSNSWLHIHVANPTSTVDIRSPLGTFAERN 562
Query: 293 SCTLYLPTETITMLPLELARDGLSLDASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQ 472
T+Y P + + MLPL + + SLD+S+ A AL+F ++++G + D +
Sbjct: 563 FQTIYHPNKIVYMLPLNITQKYWSLDSSS---------TAQRALTFSAKISKNGDILDYK 613
Query: 473 VMPSLI 490
V PS I
Sbjct: 614 VRPSFI 619
[99][TOP]
>UniRef100_UPI0001B59A2B exoribonuclease II n=1 Tax=Chlamydia trachomatis D(s)2923
RepID=UPI0001B59A2B
Length = 694
Score = 71.2 bits (173), Expect = 4e-11
Identities = 48/135 (35%), Positives = 73/135 (54%), Gaps = 3/135 (2%)
Frame = +2
Query: 122 RTDLRHLDSYAVDSASTFEVDDAMSWEADTGR---LWVHIADVSAWLKPGEPLTTEALRR 292
R DLR L + +DS+S + DDA+S D L VHIADVS ++ P L EA +R
Sbjct: 204 RKDLRDLLCFTIDSSSAKDFDDAVSLTYDHEGNYILGVHIADVSHYVTPNSALDREAAKR 263
Query: 293 SCTLYLPTETITMLPLELARDGLSLDASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQ 472
++Y P + I MLP L+ + SL + LA+S T +++G L D +
Sbjct: 264 CNSIYFPGKVIPMLPSALSDNLCSLKPNVDR----------LAVSVFMTFSKEGFLSDYR 313
Query: 473 VMPSLIRRPWRLTYE 517
++ S+IR +R+TY+
Sbjct: 314 ILRSVIRSKYRMTYD 328
[100][TOP]
>UniRef100_UPI0001B46FF8 exoribonuclease II n=1 Tax=Chlamydia trachomatis 70s
RepID=UPI0001B46FF8
Length = 694
Score = 71.2 bits (173), Expect = 4e-11
Identities = 48/135 (35%), Positives = 73/135 (54%), Gaps = 3/135 (2%)
Frame = +2
Query: 122 RTDLRHLDSYAVDSASTFEVDDAMSWEADTGR---LWVHIADVSAWLKPGEPLTTEALRR 292
R DLR L + +DS+S + DDA+S D L VHIADVS ++ P L EA +R
Sbjct: 204 RKDLRDLLCFTIDSSSAKDFDDAVSLTYDHEGNYILGVHIADVSHYVTPNSALDREAAKR 263
Query: 293 SCTLYLPTETITMLPLELARDGLSLDASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQ 472
++Y P + I MLP L+ + SL + LA+S T +++G L D +
Sbjct: 264 CNSIYFPGKVIPMLPSALSDNLCSLKPNVDR----------LAVSVFMTFSKEGFLSDYR 313
Query: 473 VMPSLIRRPWRLTYE 517
++ S+IR +R+TY+
Sbjct: 314 ILRSVIRSKYRMTYD 328
[101][TOP]
>UniRef100_UPI0001B46DE0 exoribonuclease II n=1 Tax=Chlamydia trachomatis 6276
RepID=UPI0001B46DE0
Length = 694
Score = 71.2 bits (173), Expect = 4e-11
Identities = 48/135 (35%), Positives = 73/135 (54%), Gaps = 3/135 (2%)
Frame = +2
Query: 122 RTDLRHLDSYAVDSASTFEVDDAMSWEADTGR---LWVHIADVSAWLKPGEPLTTEALRR 292
R DLR L + +DS+S + DDA+S D L VHIADVS ++ P L EA +R
Sbjct: 204 RKDLRDLLCFTIDSSSAKDFDDAVSLTYDHEGNYILGVHIADVSHYVTPNSALDREAAKR 263
Query: 293 SCTLYLPTETITMLPLELARDGLSLDASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQ 472
++Y P + I MLP L+ + SL + LA+S T +++G L D +
Sbjct: 264 CNSIYFPGKVIPMLPSALSDNLCSLKPNVDR----------LAVSVFMTFSKEGFLSDYR 313
Query: 473 VMPSLIRRPWRLTYE 517
++ S+IR +R+TY+
Sbjct: 314 ILRSVIRSKYRMTYD 328
[102][TOP]
>UniRef100_Q6AMK8 Related to ribonuclease R n=1 Tax=Desulfotalea psychrophila
RepID=Q6AMK8_DESPS
Length = 590
Score = 71.2 bits (173), Expect = 4e-11
Identities = 50/164 (30%), Positives = 81/164 (49%), Gaps = 2/164 (1%)
Frame = +2
Query: 32 PPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSWEADT 211
P FS ++ A +L ++ R D HL +D +T + DDA++ E D
Sbjct: 175 PVAFSLAARQQAEQILQTD--MDKLFDDPARIDYTHLKPITIDGPTTQDFDDALTIEKDG 232
Query: 212 GR--LWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLDASNGH 385
+ VHI+DV+ +++PG+PL EA++R ++Y P I MLP L++ SL
Sbjct: 233 ENYLVGVHISDVAHYVRPGDPLFQEAMQRGTSIYFPEGQIPMLPRHLSQGICSLIQGEIR 292
Query: 386 AHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTYE 517
A ALSF ++ + + ++ PS+I+ RLTYE
Sbjct: 293 A----------ALSFMILLSPEAEVLRVRIRPSIIKVARRLTYE 326
[103][TOP]
>UniRef100_Q46KZ5 Exoribonuclease R/ribonuclease II n=1 Tax=Prochlorococcus marinus
str. NATL2A RepID=Q46KZ5_PROMT
Length = 424
Score = 71.2 bits (173), Expect = 4e-11
Identities = 43/131 (32%), Positives = 73/131 (55%), Gaps = 2/131 (1%)
Frame = +2
Query: 128 DLRHLDSYAVDSASTFEVDDAMSWEADTG--RLWVHIADVSAWLKPGEPLTTEALRRSCT 301
DL HL +Y +D + T E+DDA+S E +G +LW+HIA +++++ + +A + T
Sbjct: 29 DLTHLKTYTIDDSKTVEIDDAISLEQVSGQNKLWIHIASPASYIEYQSGIDEKARKLVST 88
Query: 302 LYLPTETITMLPLELARDGLSLDASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMP 481
+YL T MLP L + SL S++E +LS G + +DGS+ +++
Sbjct: 89 VYLSNNTYYMLPKALINNVFSL---------SDKEKRE-SLSLGVILNDDGSISSTEIVQ 138
Query: 482 SLIRRPWRLTY 514
SLI+ +RL +
Sbjct: 139 SLIQVDYRLDF 149
[104][TOP]
>UniRef100_Q3KLV6 Exoribonuclease II n=1 Tax=Chlamydia trachomatis A/HAR-13
RepID=Q3KLV6_CHLTA
Length = 694
Score = 71.2 bits (173), Expect = 4e-11
Identities = 48/135 (35%), Positives = 73/135 (54%), Gaps = 3/135 (2%)
Frame = +2
Query: 122 RTDLRHLDSYAVDSASTFEVDDAMSWEADTGR---LWVHIADVSAWLKPGEPLTTEALRR 292
R DLR L + +DS+S + DDA+S D L VHIADVS ++ P L EA +R
Sbjct: 204 RKDLRDLLCFTIDSSSAKDFDDAVSLTYDHEGNYILGVHIADVSHYVTPNSALDREAAKR 263
Query: 293 SCTLYLPTETITMLPLELARDGLSLDASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQ 472
++Y P + I MLP L+ + SL + LA+S T +++G L D +
Sbjct: 264 CNSIYFPGKVIPMLPSALSDNLCSLKPNVDR----------LAVSVFMTFSKEGFLSDYR 313
Query: 473 VMPSLIRRPWRLTYE 517
++ S+IR +R+TY+
Sbjct: 314 ILRSVIRSKYRMTYD 328
[105][TOP]
>UniRef100_Q1AVL2 RNAse R n=1 Tax=Rubrobacter xylanophilus DSM 9941
RepID=Q1AVL2_RUBXD
Length = 535
Score = 71.2 bits (173), Expect = 4e-11
Identities = 50/134 (37%), Positives = 68/134 (50%), Gaps = 2/134 (1%)
Frame = +2
Query: 122 RTDLRHLDSYAVDSASTFEVDDAMSWEADTG--RLWVHIADVSAWLKPGEPLTTEALRRS 295
R DLR L + +D + DDA+S + G RLWVHIADV+ ++ PG L +AL R
Sbjct: 102 RRDLRRLPTVTIDGEDAKDFDDAISILREDGGYRLWVHIADVTHYVDPGGALDRQALYRG 161
Query: 296 CTLYLPTETITMLPLELARDGLSLDASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQV 475
++YLP MLP L+ D SL A V+ E +V+ +G + +V
Sbjct: 162 NSVYLPGTVAPMLPARLSADVCSLRPHADRAAVTVE----------ISVSGEGEVRGWKV 211
Query: 476 MPSLIRRPWRLTYE 517
SLI RLTYE
Sbjct: 212 YRSLICSDARLTYE 225
[106][TOP]
>UniRef100_B0B7W7 Exoribonuclease II n=2 Tax=Chlamydia trachomatis RepID=B0B7W7_CHLT2
Length = 694
Score = 71.2 bits (173), Expect = 4e-11
Identities = 48/135 (35%), Positives = 73/135 (54%), Gaps = 3/135 (2%)
Frame = +2
Query: 122 RTDLRHLDSYAVDSASTFEVDDAMSWEADTGR---LWVHIADVSAWLKPGEPLTTEALRR 292
R DLR L + +DS+S + DDA+S D L VHIADVS ++ P L EA +R
Sbjct: 204 RKDLRDLLCFTIDSSSAKDFDDAVSLTYDHEGNYILGVHIADVSHYVTPNSALDREAAKR 263
Query: 293 SCTLYLPTETITMLPLELARDGLSLDASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQ 472
++Y P + I MLP L+ + SL + LA+S T +++G L D +
Sbjct: 264 CNSIYFPGKVIPMLPSALSDNLCSLKPNVDR----------LAVSVFMTFSKEGFLSDYR 313
Query: 473 VMPSLIRRPWRLTYE 517
++ S+IR +R+TY+
Sbjct: 314 ILRSVIRSKYRMTYD 328
[107][TOP]
>UniRef100_C4X1B1 Ribonuclease R n=2 Tax=Klebsiella pneumoniae RepID=C4X1B1_KLEPN
Length = 810
Score = 71.2 bits (173), Expect = 4e-11
Identities = 51/168 (30%), Positives = 81/168 (48%), Gaps = 3/168 (1%)
Frame = +2
Query: 20 SHFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSW 199
+H P + P +++ +GL P ++ G R DLR L +D + DDA+
Sbjct: 230 THEIPYVWPPAVEKQVSGLKEQVPEEAKAG----RVDLRSLPLVTIDGEDARDFDDAVYC 285
Query: 200 EADTG---RLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLD 370
E G RLWV IADVS +++PG PL EA R ++Y P++ + MLP L
Sbjct: 286 EKKRGGGWRLWVAIADVSYYVRPGTPLDAEARSRGTSVYFPSQVVPMLPEVL-------- 337
Query: 371 ASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTY 514
SNG ++ + + L + T++ G L + +++ RLTY
Sbjct: 338 -SNGLCSLNPQVDR-LCMVCEMTISSKGRLTGYKFYEAVMSSHARLTY 383
[108][TOP]
>UniRef100_C4PMQ4 Exoribonuclease II n=2 Tax=Chlamydia trachomatis RepID=C4PMQ4_CHLTZ
Length = 694
Score = 71.2 bits (173), Expect = 4e-11
Identities = 48/135 (35%), Positives = 73/135 (54%), Gaps = 3/135 (2%)
Frame = +2
Query: 122 RTDLRHLDSYAVDSASTFEVDDAMSWEADTGR---LWVHIADVSAWLKPGEPLTTEALRR 292
R DLR L + +DS+S + DDA+S D L VHIADVS ++ P L EA +R
Sbjct: 204 RKDLRDLLCFTIDSSSAKDFDDAVSLTYDHEGNYILGVHIADVSHYVTPNSALDREAAKR 263
Query: 293 SCTLYLPTETITMLPLELARDGLSLDASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQ 472
++Y P + I MLP L+ + SL + LA+S T +++G L D +
Sbjct: 264 CNSIYFPGKVIPMLPSALSDNLCSLKPNVDR----------LAVSVFMTFSKEGFLSDYR 313
Query: 473 VMPSLIRRPWRLTYE 517
++ S+IR +R+TY+
Sbjct: 314 ILRSVIRSKYRMTYD 328
[109][TOP]
>UniRef100_A8SB02 Putative uncharacterized protein n=1 Tax=Faecalibacterium
prausnitzii M21/2 RepID=A8SB02_9FIRM
Length = 707
Score = 71.2 bits (173), Expect = 4e-11
Identities = 53/139 (38%), Positives = 77/139 (55%), Gaps = 7/139 (5%)
Frame = +2
Query: 98 SEVGPSAC--RTDLRHLDSYAVDSASTFEVDDAMSWEA--DTG-RLWVHIADVSAWLKPG 262
+EV + C R DLR L + +DSA T ++DDA+S D G L VHIADVS ++KPG
Sbjct: 232 AEVSAADCEGRMDLRALPIFTIDSAETKDIDDAISLTKTPDGGFELGVHIADVSNYVKPG 291
Query: 263 EPLTTEALRRSCTLYLPTETITMLPLELARDGLSLDASNGHAHVSEEENAVLALSFG--F 436
L EA R+ ++Y + + MLP +L SNG ++E VL L+F
Sbjct: 292 SELDNEAFNRATSVYYADQVVPMLPKQL---------SNGICSLNE---GVLRLAFSCLM 339
Query: 437 TVAEDGSLGDPQVMPSLIR 493
+ +DG+L D + + S+IR
Sbjct: 340 RLDKDGNLTDYRFVKSVIR 358
[110][TOP]
>UniRef100_B9LSB8 Ribonuclease II n=1 Tax=Halorubrum lacusprofundi ATCC 49239
RepID=B9LSB8_HALLT
Length = 433
Score = 71.2 bits (173), Expect = 4e-11
Identities = 52/135 (38%), Positives = 69/135 (51%), Gaps = 3/135 (2%)
Frame = +2
Query: 122 RTDLRHLDSYAVDSASTFEVDDAMSWEADTG--RLWVHIADVSAWLKPGEPLTTEALRRS 295
R DLR L ++ D + DDA+S E + G RLWVHIADV+ ++ P + EA++R+
Sbjct: 70 RKDLRDLTTWTTDPIDAQDFDDAISIEREEGAYRLWVHIADVTHYVTPDTAMWEEAVKRA 129
Query: 296 CTLYLPTETITMLPLELARDGLSLDASNGH-AHVSEEENAVLALSFGFTVAEDGSLGDPQ 472
T+YLP TI MLP LA SL + AH E E LSF D
Sbjct: 130 NTVYLPDYTIHMLPPVLAETVCSLVPNEDRLAHTVEMEIDDETLSF----------EDID 179
Query: 473 VMPSLIRRPWRLTYE 517
+ S+I RLTY+
Sbjct: 180 IYKSVINSDERLTYK 194
[111][TOP]
>UniRef100_O84402 Ribonuclease R n=1 Tax=Chlamydia trachomatis RepID=RNR_CHLTR
Length = 694
Score = 71.2 bits (173), Expect = 4e-11
Identities = 48/135 (35%), Positives = 73/135 (54%), Gaps = 3/135 (2%)
Frame = +2
Query: 122 RTDLRHLDSYAVDSASTFEVDDAMSWEADTGR---LWVHIADVSAWLKPGEPLTTEALRR 292
R DLR L + +DS+S + DDA+S D L VHIADVS ++ P L EA +R
Sbjct: 204 RKDLRDLLCFTIDSSSAKDFDDAVSLTYDHEGNYILGVHIADVSHYVTPNSALDREAAKR 263
Query: 293 SCTLYLPTETITMLPLELARDGLSLDASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQ 472
++Y P + I MLP L+ + SL + LA+S T +++G L D +
Sbjct: 264 CNSIYFPGKVIPMLPSALSDNLCSLKPNVDR----------LAVSVFMTFSKEGFLSDYR 313
Query: 473 VMPSLIRRPWRLTYE 517
++ S+IR +R+TY+
Sbjct: 314 ILRSVIRSKYRMTYD 328
[112][TOP]
>UniRef100_B2A6Y6 Ribonuclease R n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF
RepID=B2A6Y6_NATTJ
Length = 709
Score = 70.5 bits (171), Expect = 6e-11
Identities = 53/171 (30%), Positives = 85/171 (49%), Gaps = 5/171 (2%)
Frame = +2
Query: 20 SHFYPPTFSPELQEAANGLLSAGPLASEVGPSAC--RTDLRHLDSYAVDSASTFEVDDAM 193
S YPP +L+E N E+ P R ++ L + +D + ++DDA+
Sbjct: 221 SEDYPPKVKEQLEEVPN----------EISPKDYEGRELIQGLPTVTIDGSDAKDLDDAV 270
Query: 194 SWEA-DTGR--LWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLS 364
S E D G L VHIADVS +++ G PL EA +R ++YL + MLP +L+ + S
Sbjct: 271 SLEKLDNGNMELGVHIADVSYYVREGTPLDKEARQRGTSVYLVDRVLPMLPPKLSNNICS 330
Query: 365 LDASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTYE 517
L+ L +S + E+G + + ++ PS+I+ +RLTYE
Sbjct: 331 LNPGVER----------LTMSAFVELTEEGDIANYRLTPSVIKSNYRLTYE 371
[113][TOP]
>UniRef100_A1AN74 Ribonuclease R n=1 Tax=Pelobacter propionicus DSM 2379
RepID=A1AN74_PELPD
Length = 777
Score = 70.5 bits (171), Expect = 6e-11
Identities = 51/163 (31%), Positives = 72/163 (44%), Gaps = 2/163 (1%)
Frame = +2
Query: 32 PPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSW--EA 205
P F+P+ A + P G R DLR L + +D + + DDA+S E
Sbjct: 217 PHVFAPDTLAEAEAIPETVPAQELAG----RVDLRPLATVTIDGETARDFDDAVSLRREG 272
Query: 206 DTGRLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLDASNGH 385
D RLWV IADVS +++P PL +A R ++Y P I MLP L+ SL+
Sbjct: 273 DNFRLWVSIADVSHYVRPDSPLDRDAYLRGTSVYFPDRCIPMLPERLSNGICSLNPGVER 332
Query: 386 AHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTY 514
L ++ DGS+ + P +I RLTY
Sbjct: 333 ----------LTMTAEMLFDRDGSMLESSFYPGIIASAARLTY 365
[114][TOP]
>UniRef100_C7H5E0 Ribonuclease R n=1 Tax=Faecalibacterium prausnitzii A2-165
RepID=C7H5E0_9FIRM
Length = 705
Score = 70.5 bits (171), Expect = 6e-11
Identities = 48/126 (38%), Positives = 69/126 (54%), Gaps = 3/126 (2%)
Frame = +2
Query: 122 RTDLRHLDSYAVDSASTFEVDDAMSWEADTG---RLWVHIADVSAWLKPGEPLTTEALRR 292
R DLR L + +DSA T ++DDA+S G L VHIADVS ++KPG L EA R
Sbjct: 242 RMDLRALPIFTIDSAETKDIDDAVSLTRLPGGGYELGVHIADVSHYVKPGSELNEEAFNR 301
Query: 293 SCTLYLPTETITMLPLELARDGLSLDASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQ 472
+ ++Y + + MLP L SNG ++E+E LA S + +DG+L D +
Sbjct: 302 ATSVYYADQVVPMLPKSL---------SNGICSLNEKE-LRLAFSCLMRLDQDGNLTDYK 351
Query: 473 VMPSLI 490
+ S+I
Sbjct: 352 FVKSII 357
[115][TOP]
>UniRef100_B7RW80 Ribonuclease R n=1 Tax=marine gamma proteobacterium HTCC2148
RepID=B7RW80_9GAMM
Length = 819
Score = 70.5 bits (171), Expect = 6e-11
Identities = 52/152 (34%), Positives = 72/152 (47%), Gaps = 5/152 (3%)
Frame = +2
Query: 74 LLSAGPLASEVGPS--ACRTDLRHLDSYAVDSASTFEVDDAMSWEADTG---RLWVHIAD 238
L AG LA E R DLRHL +D + DDA+ E +G RLWV IAD
Sbjct: 274 LAEAGALAEEPAEQDKLNRMDLRHLAFVTIDGEDARDFDDAVYCETASGGGWRLWVAIAD 333
Query: 239 VSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLDASNGHAHVSEEENAVL 418
V +++PG L EA +R+ ++Y P + MLP L+ SL + L
Sbjct: 334 VCHYVRPGSALDEEASKRATSVYFPERVVPMLPEALSNGLCSLKPAVDR----------L 383
Query: 419 ALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTY 514
A+ +++ G+LG Q S+I RLTY
Sbjct: 384 AMVCEMEISKAGALGKYQFYESVIHSHARLTY 415
[116][TOP]
>UniRef100_C5XPP8 Putative uncharacterized protein Sb03g039500 n=1 Tax=Sorghum
bicolor RepID=C5XPP8_SORBI
Length = 782
Score = 70.5 bits (171), Expect = 6e-11
Identities = 50/162 (30%), Positives = 80/162 (49%), Gaps = 3/162 (1%)
Frame = +2
Query: 41 FSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMS-WEADTGR 217
++ E+ AA LL P A R DL L YA+D E+DDA+S GR
Sbjct: 350 YTDEVLSAAEELLVDSPDAD----MHIRKDLSTLKVYAIDVDEADELDDALSATRLPDGR 405
Query: 218 L--WVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLDASNGHAH 391
+ W+H+AD + +KP + EA+ R +++LPT TI M P LA + +SL
Sbjct: 406 IKVWIHVADPTCLVKPRSIIDREAMHRGTSIFLPTATIPMFPERLAMNAMSL-------- 457
Query: 392 VSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTYE 517
++ +++ + DGS+ + + S+I+ + LTYE
Sbjct: 458 --QQGKECKSVTVSVILNSDGSIAEYTLENSVIKPTYMLTYE 497
[117][TOP]
>UniRef100_UPI0001A42FBC exoribonuclease R n=1 Tax=Pectobacterium carotovorum subsp.
brasiliensis PBR1692 RepID=UPI0001A42FBC
Length = 818
Score = 70.1 bits (170), Expect = 8e-11
Identities = 52/168 (30%), Positives = 80/168 (47%), Gaps = 3/168 (1%)
Frame = +2
Query: 20 SHFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSW 199
+H P T+ +++E L P A++ G R DLR L +D + DDA+
Sbjct: 230 THDIPHTWPEKVEEQVKDLSEEVPEAAKKG----RVDLRKLPLVTIDGEDARDFDDAVHC 285
Query: 200 EADTG---RLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLD 370
E G RLWV IADVS +++P PL EA R ++Y P++ + MLP L
Sbjct: 286 EPKRGGGWRLWVAIADVSYYVRPNTPLDHEARARGTSVYFPSQVVPMLPEVL-------- 337
Query: 371 ASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTY 514
SNG ++ + + L + TV+ G L + +++ RLTY
Sbjct: 338 -SNGLCSLNPQVDR-LCMVCEMTVSAQGKLSSYKFYEAVMSSHARLTY 383
[118][TOP]
>UniRef100_B5Y323 Ribonuclease R n=1 Tax=Klebsiella pneumoniae 342 RepID=B5Y323_KLEP3
Length = 812
Score = 70.1 bits (170), Expect = 8e-11
Identities = 51/168 (30%), Positives = 81/168 (48%), Gaps = 3/168 (1%)
Frame = +2
Query: 20 SHFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSW 199
+H P + P +++ +GL P ++ G R DLR L +D + DDA+
Sbjct: 230 THEIPYVWPPAVEKQVSGLKEQVPEEAKAG----RVDLRSLPLVTIDGEDARDFDDAVYC 285
Query: 200 EADTG---RLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLD 370
E G RLWV IADVS +++PG PL EA R ++Y P++ + MLP L
Sbjct: 286 EKKRGGGWRLWVAIADVSYYVRPGTPLDGEARSRGTSVYFPSQVVPMLPEVL-------- 337
Query: 371 ASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTY 514
SNG ++ + + L + T++ G L + +++ RLTY
Sbjct: 338 -SNGLCSLNPQVDR-LCMVCEMTISSKGRLTGFKFYEAVMSSHARLTY 383
[119][TOP]
>UniRef100_Q1NL99 3'-5' exoribonuclease, VacB and RNase II:Ribonuclease R n=1
Tax=delta proteobacterium MLMS-1 RepID=Q1NL99_9DELT
Length = 782
Score = 70.1 bits (170), Expect = 8e-11
Identities = 56/168 (33%), Positives = 79/168 (47%), Gaps = 3/168 (1%)
Frame = +2
Query: 20 SHFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSW 199
SH P F+P L L + ++ P A R DLR + +DS S + DDA++
Sbjct: 287 SHQLPHRFAPAL------LAEVEAYSDKIEPQASRLDLREIPHVTIDSESARDYDDAVAV 340
Query: 200 E--ADTG-RLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLD 370
E A G RL+V IADVS +++PG L EA R ++Y P + MLP L+ D SL
Sbjct: 341 EPLAKGGLRLYVSIADVSHYVQPGSALDDEAYARGTSVYFPGRVVPMLPERLSNDLCSL- 399
Query: 371 ASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTY 514
V +++ ++ F G + SLIR RLTY
Sbjct: 400 -------VPDQDRYTMSAIIDFD--GKGQRKSARFGKSLIRSRHRLTY 438
[120][TOP]
>UniRef100_C2D5G8 Exoribonuclease R n=1 Tax=Lactobacillus brevis subsp. gravesensis
ATCC 27305 RepID=C2D5G8_LACBR
Length = 780
Score = 70.1 bits (170), Expect = 8e-11
Identities = 54/173 (31%), Positives = 86/173 (49%), Gaps = 3/173 (1%)
Frame = +2
Query: 5 LELRASHFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVD 184
L++ SH P F ++ +AA+ + + G R D+ D +D S+ ++D
Sbjct: 220 LQIVYSHDIPAEFPEDVLQAADAIPDHVTEEEKAG----REDITDQDLVTIDGESSKDLD 275
Query: 185 DAMS-WEADTGR--LWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARD 355
DA++ W+ G L VHIADVS ++K G + EA RR ++YL I MLP L
Sbjct: 276 DAVTAWKLPNGNYHLGVHIADVSHYVKAGGLIDKEAYRRGTSVYLTDRVIPMLPRRL--- 332
Query: 356 GLSLDASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTY 514
SNG ++E E L +S + + G++ ++ PSL+R R+TY
Sbjct: 333 ------SNGICSLNEGE-LRLCMSCEMEIDQSGNVVKHRIHPSLMRSKARMTY 378
[121][TOP]
>UniRef100_C0XMN5 Exoribonuclease R n=1 Tax=Lactobacillus hilgardii ATCC 8290
RepID=C0XMN5_LACHI
Length = 780
Score = 70.1 bits (170), Expect = 8e-11
Identities = 55/173 (31%), Positives = 86/173 (49%), Gaps = 3/173 (1%)
Frame = +2
Query: 5 LELRASHFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVD 184
L++ SH P F ++ +AA+ + P A R D+ D +D S+ ++D
Sbjct: 220 LQIVYSHDIPAEFPEDVLQAADAI----PDHITEEEKAGREDITDQDLVTIDGESSKDLD 275
Query: 185 DAMS-WEADTGR--LWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARD 355
DA++ W+ G L VHIADVS ++K G + EA RR ++YL I MLP L
Sbjct: 276 DAVTAWKLPNGNYHLGVHIADVSHYVKAGGLIDKEAYRRGTSVYLTDRVIPMLPRRL--- 332
Query: 356 GLSLDASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTY 514
SNG ++E E L +S + + G++ ++ PSL+R R+TY
Sbjct: 333 ------SNGICSLNEGE-LRLCMSCEMEIDQSGNVVKHRIHPSLMRSKARMTY 378
[122][TOP]
>UniRef100_C0WUC0 Exoribonuclease R n=1 Tax=Lactobacillus buchneri ATCC 11577
RepID=C0WUC0_LACBU
Length = 780
Score = 70.1 bits (170), Expect = 8e-11
Identities = 54/173 (31%), Positives = 86/173 (49%), Gaps = 3/173 (1%)
Frame = +2
Query: 5 LELRASHFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVD 184
L++ SH P F ++ +AA+ + + G R D+ D +D S+ ++D
Sbjct: 220 LQIVYSHDIPAEFPEDVLQAADAIPDHVTEEEKAG----REDITDQDLVTIDGESSKDLD 275
Query: 185 DAMS-WEADTGR--LWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARD 355
DA++ W+ G L VHIADVS ++K G + EA RR ++YL I MLP L
Sbjct: 276 DAVTAWKLPNGNYHLGVHIADVSHYVKAGGLIDKEAYRRGTSVYLTDRVIPMLPRRL--- 332
Query: 356 GLSLDASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTY 514
SNG ++E E L +S + + G++ ++ PSL+R R+TY
Sbjct: 333 ------SNGICSLNEGE-LRLCMSCEMEIDQSGNVVKHRIHPSLMRSKARMTY 378
[123][TOP]
>UniRef100_B6WY09 Putative uncharacterized protein n=1 Tax=Desulfovibrio piger ATCC
29098 RepID=B6WY09_9DELT
Length = 803
Score = 70.1 bits (170), Expect = 8e-11
Identities = 61/173 (35%), Positives = 81/173 (46%), Gaps = 4/173 (2%)
Frame = +2
Query: 11 LRASHFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDA 190
++ +H P F P +Q A+ L SA A G R D+R L +D A + DDA
Sbjct: 230 VKLNHEVPREFPPRVQAEADALPSAPRHADMAG----REDVRALPLVTIDGADARDFDDA 285
Query: 191 MSWEADTGRLW---VHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGL 361
+ EA G W V IADVS +++P L TEAL R + Y PT MLP L DGL
Sbjct: 286 VQVEARPGGGWLLRVAIADVSHYVRPRSALDTEALARGNSWYFPTSVEPMLPPALC-DGL 344
Query: 362 SLDASNGHAHVSEEENAVLA-LSFGFTVAEDGSLGDPQVMPSLIRRPWRLTYE 517
E+ A+LA + F T G G P+ ++R RLTY+
Sbjct: 345 C------SLRPDEDRLAMLAEIPFSAT----GQPGKPRFAAVVMRSAARLTYD 387
[124][TOP]
>UniRef100_B5IJX0 Exoribonuclease, VacB/RNB family protein n=1 Tax=Cyanobium sp. PCC
7001 RepID=B5IJX0_9CHRO
Length = 654
Score = 70.1 bits (170), Expect = 8e-11
Identities = 54/163 (33%), Positives = 77/163 (47%), Gaps = 5/163 (3%)
Frame = +2
Query: 41 FSPELQEAANGLLSA--GPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSWEADTG 214
FS +L+ A L+ GP A + R DL L +D A T ++DDA+ E
Sbjct: 232 FSADLEAEARRLIDRADGPCAGD----GDRLDLTALHCVTIDDADTRDIDDAIGLERCAD 287
Query: 215 ---RLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLDASNGH 385
RLW+HIAD + PL EA RR +LYL + T+ M P LA LSL A +
Sbjct: 288 GLLRLWIHIADPGRLVALDSPLDVEARRRGSSLYLASGTLPMFPEALATGPLSLVAGRRN 347
Query: 386 AHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTY 514
A A S G + +G++ ++ S +R +RL+Y
Sbjct: 348 A----------AWSLGLELDGEGAITATRLARSWVRPTYRLSY 380
[125][TOP]
>UniRef100_Q824B3 Exoribonuclease, VacB/Rnb family n=1 Tax=Chlamydophila caviae
RepID=Q824B3_CHLCV
Length = 678
Score = 69.7 bits (169), Expect = 1e-10
Identities = 48/135 (35%), Positives = 70/135 (51%), Gaps = 3/135 (2%)
Frame = +2
Query: 122 RTDLRHLDSYAVDSASTFEVDDAMSWEADTGR---LWVHIADVSAWLKPGEPLTTEALRR 292
R DLR L + +DS + + DDA+S D L VHIADVS ++ P L EA +R
Sbjct: 207 RKDLRDLLCFTIDSITAKDFDDAVSLTYDNNDNYILGVHIADVSHYVTPHSALDQEASKR 266
Query: 293 SCTLYLPTETITMLPLELARDGLSLDASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQ 472
++Y P + I MLP L+ + SL + LA+S T ++G L D +
Sbjct: 267 CNSIYFPGKVIPMLPSALSDNLCSLKPNVDR----------LAVSVFMTFTKEGHLSDYE 316
Query: 473 VMPSLIRRPWRLTYE 517
V S+IR +R+TY+
Sbjct: 317 VFRSVIRSKYRMTYD 331
[126][TOP]
>UniRef100_B0S925 Exoribonuclease R n=2 Tax=Leptospira biflexa serovar Patoc
RepID=B0S925_LEPBA
Length = 730
Score = 69.7 bits (169), Expect = 1e-10
Identities = 44/134 (32%), Positives = 70/134 (52%), Gaps = 2/134 (1%)
Frame = +2
Query: 122 RTDLRHLDSYAVDSASTFEVDDAMSW--EADTGRLWVHIADVSAWLKPGEPLTTEALRRS 295
RTDLR L + +D + + DDA+S+ E + R+W+HIADVS +++ G L EA R+
Sbjct: 274 RTDLRDLYAVTIDGITAKDFDDAISFVDEGNRLRIWIHIADVSYYVEKGSALDKEAYERA 333
Query: 296 CTLYLPTETITMLPLELARDGLSLDASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQV 475
++YL + MLP L+ D SL A+ LA + ++ G + + +
Sbjct: 334 TSVYLANRVVPMLPPILSEDLCSLVANTNR----------LAFTVEMEASKSGEIYNAKF 383
Query: 476 MPSLIRRPWRLTYE 517
S+I+ R TYE
Sbjct: 384 YKSIIKVKKRYTYE 397
[127][TOP]
>UniRef100_A8ZTJ4 Exoribonuclease II n=1 Tax=Desulfococcus oleovorans Hxd3
RepID=A8ZTJ4_DESOH
Length = 666
Score = 69.7 bits (169), Expect = 1e-10
Identities = 51/167 (30%), Positives = 85/167 (50%), Gaps = 3/167 (1%)
Frame = +2
Query: 23 HFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSWE 202
H P ++ ++ +A+ L++ + S GP R DL L + +D + T + DDA+S E
Sbjct: 244 HRVPVSWPDDVTKASEKLVATAGIPS-AGPD--RVDLTGLSLFTIDGSQTLDFDDALSLE 300
Query: 203 A-DTG--RLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLDA 373
+ G RL +HI+DV ++K +PL EAL+R ++Y + I MLP E++ SL A
Sbjct: 301 PMENGACRLGIHISDVGHYIKKEDPLDAEALKRGSSIYTADKKIPMLPAEISEGLCSLVA 360
Query: 374 SNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTY 514
A+S T++ + + +V+ S+IR LTY
Sbjct: 361 GKPRP----------AISMLITLSSSAEVMECRVVASVIRVENHLTY 397
[128][TOP]
>UniRef100_A5G505 Ribonuclease R n=1 Tax=Geobacter uraniireducens Rf4
RepID=A5G505_GEOUR
Length = 763
Score = 69.7 bits (169), Expect = 1e-10
Identities = 48/134 (35%), Positives = 68/134 (50%), Gaps = 3/134 (2%)
Frame = +2
Query: 122 RTDLRHLDSYAVDSASTFEVDDAMSWEADTG---RLWVHIADVSAWLKPGEPLTTEALRR 292
RTDLR + +D + + DDA+S + + RLWV IADVS ++KPG P+ EA R
Sbjct: 244 RTDLRGRPTVTIDGETARDFDDAVSVKREGKGNIRLWVSIADVSHYVKPGSPIDREAYLR 303
Query: 293 SCTLYLPTETITMLPLELARDGLSLDASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQ 472
++Y P I MLP EL+ SL+ + V+ E + FG G +
Sbjct: 304 GTSVYFPDRCIPMLPEELSNGICSLNPTVDRLTVTAE------MLFG----PSGEMLQAS 353
Query: 473 VMPSLIRRPWRLTY 514
PS+I+ RLTY
Sbjct: 354 FYPSVIKSAARLTY 367
[129][TOP]
>UniRef100_C8QL69 Ribonuclease R n=1 Tax=Dickeya dadantii Ech586 RepID=C8QL69_DICDA
Length = 824
Score = 69.7 bits (169), Expect = 1e-10
Identities = 51/168 (30%), Positives = 82/168 (48%), Gaps = 3/168 (1%)
Frame = +2
Query: 20 SHFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSW 199
+H P ++ P+++E + L P +++ G R DLR L +D + DDA+
Sbjct: 230 THEIPHSWPPKVEEQVSDLAEEVPESAKKG----RVDLRSLPLVTIDGEDARDFDDAVYC 285
Query: 200 EADTG---RLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLD 370
E G RLWV IADVS +++PG L EA R ++Y P++ + MLP L
Sbjct: 286 EKKRGGGWRLWVAIADVSYYVRPGTALDHEARARGTSVYFPSQVVPMLPEVL-------- 337
Query: 371 ASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTY 514
SNG ++ + + L + TV+ G L + +++ RLTY
Sbjct: 338 -SNGLCSLNPQVDR-LCMVCEMTVSTQGKLSGYKFYEAVMSSHARLTY 383
[130][TOP]
>UniRef100_C6NKN4 Ribonuclease R n=1 Tax=Pectobacterium wasabiae WPP163
RepID=C6NKN4_9ENTR
Length = 818
Score = 69.7 bits (169), Expect = 1e-10
Identities = 52/168 (30%), Positives = 80/168 (47%), Gaps = 3/168 (1%)
Frame = +2
Query: 20 SHFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSW 199
+H P T+ P+++E L P A++ G R DLR L +D + DDA+
Sbjct: 230 THDIPHTWPPKVEEQVKDLSEEVPEAAKKG----RVDLRKLPLVTIDGEDARDFDDAVYC 285
Query: 200 EADTG---RLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLD 370
E G RLWV IADVS +++P L EA R ++Y P++ + MLP L
Sbjct: 286 EQKRGGGWRLWVAIADVSYYVRPNTALDHEARARGTSVYFPSQVVPMLPEVL-------- 337
Query: 371 ASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTY 514
SNG ++ + + L + TV+ G L + +++ RLTY
Sbjct: 338 -SNGLCSLNPQVDR-LCMVCEMTVSAQGKLSSYKFYEAVMSSHARLTY 383
[131][TOP]
>UniRef100_C1MV31 Predicted protein n=1 Tax=Micromonas pusilla CCMP1545
RepID=C1MV31_9CHLO
Length = 636
Score = 69.7 bits (169), Expect = 1e-10
Identities = 47/137 (34%), Positives = 68/137 (49%), Gaps = 12/137 (8%)
Frame = +2
Query: 23 HFYPPTFSPELQEAANGLLSAGPLASEVG-----PSACRTDLR-HLDSYAVDSASTFEVD 184
H P F + + A+ + +A A++ +A R DLR D YA+D TFEVD
Sbjct: 91 HGIPTAFPARVLDEADAVEAAAIAAADGDVDDDVDAATRKDLRGRFDVYAIDGDDTFEVD 150
Query: 185 DAMSWEA------DTGRLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLEL 346
D +S EA D R+W+H+ADV+ ++ G L EA R + Y P ++M P L
Sbjct: 151 DGVSAEAMGPGSGDAIRVWIHVADVARHVRLGGALEAEARERGASGYAPDRVVSMFPPRL 210
Query: 347 ARDGLSLDASNGHAHVS 397
A + LSL + VS
Sbjct: 211 AAETLSLRLNEPRCAVS 227
[132][TOP]
>UniRef100_Q9Z848 Ribonuclease R n=1 Tax=Chlamydophila pneumoniae RepID=RNR_CHLPN
Length = 676
Score = 69.7 bits (169), Expect = 1e-10
Identities = 57/172 (33%), Positives = 86/172 (50%), Gaps = 3/172 (1%)
Frame = +2
Query: 11 LRASHFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDA 190
++A + F PE+ E A+ L + ++V S R DLR L + +DS++ + DDA
Sbjct: 174 IQAEYNLAEEFPPEVIEEAS--LFSQKHITQVLHS--RKDLRDLLCFTIDSSTARDFDDA 229
Query: 191 MSWEADTGR---LWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGL 361
+S D L VHIADVS ++ P L EA +R + Y P + I MLP L+ +
Sbjct: 230 ISLTYDHNNNYILGVHIADVSHYVTPHSHLDKEAAKRCNSTYFPGKVIPMLPSALSDNLC 289
Query: 362 SLDASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTYE 517
SL + LA+S T + G L D Q+ S+IR +R+TY+
Sbjct: 290 SLKPNVDR----------LAVSVFMTFTKSGHLSDYQIFRSVIRSKYRMTYD 331
[133][TOP]
>UniRef100_B8FGU6 Exoribonuclease II n=1 Tax=Desulfatibacillum alkenivorans AK-01
RepID=B8FGU6_DESAA
Length = 669
Score = 69.3 bits (168), Expect = 1e-10
Identities = 51/163 (31%), Positives = 78/163 (47%), Gaps = 2/163 (1%)
Frame = +2
Query: 32 PPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSWEADT 211
P F E+ + AN L + ++ R D L +D +T + DDA+S E D
Sbjct: 253 PIDFPREISQEANALANGSGFRTDTSQ---RRDFTGLPVLTIDGQATLDYDDALSLEMDG 309
Query: 212 G--RLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLDASNGH 385
R+ +HI+DVS +++ G L EA RS ++Y+P + I M P LA LSL A
Sbjct: 310 DYFRVGIHISDVSHYVERGSLLDQEAFARSSSIYMPDDKIPMFPPLLAEGLLSLKA---- 365
Query: 386 AHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTY 514
+ A+S + D + D ++ PSL+R +LTY
Sbjct: 366 ------DQVRPAISVMVRLDRDAVVLDYEICPSLVRVRRQLTY 402
[134][TOP]
>UniRef100_A1VBI0 Ribonuclease R n=1 Tax=Desulfovibrio vulgaris DP4
RepID=A1VBI0_DESVV
Length = 886
Score = 69.3 bits (168), Expect = 1e-10
Identities = 58/171 (33%), Positives = 79/171 (46%), Gaps = 3/171 (1%)
Frame = +2
Query: 11 LRASHFYPPTFS-PELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDD 187
++ +H P F P L+EAA P A G A R DLRH++ +D A + DD
Sbjct: 224 VKINHGVPTEFPVPVLEEAATL-----PPAPGGGDFADRIDLRHMEFVTIDGARARDFDD 278
Query: 188 AMSWEADTG--RLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGL 361
A+ E RLWV IADVS +++PG + EAL RS + Y P MLP L+
Sbjct: 279 AICVEEQGKGWRLWVAIADVSHYVRPGSAMDREALERSNSYYFPQSVEPMLPEALSNGLC 338
Query: 362 SLDASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTY 514
SL+ LA+ +GS G + P++I RLTY
Sbjct: 339 SLNPRVPR----------LAMVAEIYFFGEGSPGKCKFYPAVIESKARLTY 379
[135][TOP]
>UniRef100_Q2BIF4 Ribonuclease R n=1 Tax=Neptuniibacter caesariensis
RepID=Q2BIF4_9GAMM
Length = 881
Score = 69.3 bits (168), Expect = 1e-10
Identities = 54/148 (36%), Positives = 76/148 (51%), Gaps = 5/148 (3%)
Frame = +2
Query: 86 GPLASEVGPSAC--RTDLRHLDSYAVDSASTFEVDDAMSWEADTG---RLWVHIADVSAW 250
G LA+EV +A R DLR L +D + DDA+ E RLWV IADVS +
Sbjct: 253 GELAAEVEENAKQNRVDLRDLPLVTIDGEDAKDFDDAVYAERKKSGGWRLWVAIADVSWY 312
Query: 251 LKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLDASNGHAHVSEEENAVLALSF 430
++PG L EA +RS + Y P + MLP EL +GL + + HV LA+
Sbjct: 313 VRPGSELDNEAFKRSNSTYFPEFVVPMLP-ELLSNGL----CSLNPHVDR-----LAMVC 362
Query: 431 GFTVAEDGSLGDPQVMPSLIRRPWRLTY 514
T++E G+L + ++I+ RLTY
Sbjct: 363 EMTISESGNLSGYKFYEAVIQSHARLTY 390
[136][TOP]
>UniRef100_Q1NRA8 Exoribonuclease II n=1 Tax=delta proteobacterium MLMS-1
RepID=Q1NRA8_9DELT
Length = 663
Score = 69.3 bits (168), Expect = 1e-10
Identities = 52/164 (31%), Positives = 80/164 (48%), Gaps = 2/164 (1%)
Frame = +2
Query: 32 PPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSWEADT 211
P F+PE AA + P A+E+ R DLR L +D AST ++DDA+ +
Sbjct: 246 PVEFAPEELAAAEAM--GEPEAAELLAEG-RRDLRQLPVMTIDGASTRDLDDALHIQRQG 302
Query: 212 G--RLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLDASNGH 385
++ +HIADV+ ++KPG L A+RR +LY P + MLP L+ + SL A
Sbjct: 303 ANFQVGIHIADVAHFVKPGSILFNAAVRRVTSLYFPEGQVPMLPPRLSENLCSLLAGRPR 362
Query: 386 AHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTYE 517
A+SF T+ G + D + +++ RL Y+
Sbjct: 363 P----------AMSFLLTITPQGEIVDSSIEATVVEVKKRLDYD 396
[137][TOP]
>UniRef100_Q728Y5 Ribonuclease R n=2 Tax=Desulfovibrio vulgaris RepID=Q728Y5_DESVH
Length = 886
Score = 69.3 bits (168), Expect = 1e-10
Identities = 58/171 (33%), Positives = 79/171 (46%), Gaps = 3/171 (1%)
Frame = +2
Query: 11 LRASHFYPPTFS-PELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDD 187
++ +H P F P L+EAA P A G A R DLRH++ +D A + DD
Sbjct: 224 VKINHGVPTEFPVPVLEEAATL-----PPAPGGGDFADRIDLRHMEFVTIDGARARDFDD 278
Query: 188 AMSWEADTG--RLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGL 361
A+ E RLWV IADVS +++PG + EAL RS + Y P MLP L+
Sbjct: 279 AICVEEQGKGWRLWVAIADVSHYVRPGSAMDREALERSNSYYFPQSVEPMLPEALSNGLC 338
Query: 362 SLDASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTY 514
SL+ LA+ +GS G + P++I RLTY
Sbjct: 339 SLNPRVPR----------LAMVAEIYFFGEGSPGKCKFYPAVIESKARLTY 379
[138][TOP]
>UniRef100_C1SGC4 Ribonuclease R n=1 Tax=Denitrovibrio acetiphilus DSM 12809
RepID=C1SGC4_9BACT
Length = 682
Score = 69.3 bits (168), Expect = 1e-10
Identities = 48/133 (36%), Positives = 65/133 (48%), Gaps = 2/133 (1%)
Frame = +2
Query: 122 RTDLRHLDSYAVDSASTFEVDDAMSWEADTGR--LWVHIADVSAWLKPGEPLTTEALRRS 295
RTDLR L + +D + + DDA+S E L+VHIADV +++PG P+ EA RR
Sbjct: 232 RTDLRSLPTVTIDGETAKDFDDAISIEKTENEFILYVHIADVCHFVQPGTPVDNEAYRRG 291
Query: 296 CTLYLPTETITMLPLELARDGLSLDASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQV 475
+ Y P + MLP L SNG + E+ LAL+ T +DG
Sbjct: 292 TSFYFPEFAVPMLPESL---------SNGLCSLRPNEDR-LALTAKITYTKDGQRKKAYF 341
Query: 476 MPSLIRRPWRLTY 514
S+I RLTY
Sbjct: 342 YRSIINSDRRLTY 354
[139][TOP]
>UniRef100_UPI0001698860 ribonuclease II family protein n=1 Tax=Endoriftia persephone
'Hot96_1+Hot96_2' RepID=UPI0001698860
Length = 228
Score = 68.9 bits (167), Expect = 2e-10
Identities = 47/137 (34%), Positives = 69/137 (50%), Gaps = 1/137 (0%)
Frame = +2
Query: 110 PSACRTDLRHLDSYAVDSASTFEVDDAMSWEADTGRLWVHIADVSAWLKPGEPLTTEALR 289
P R DL HL +YA+D A + DDA+S D R+WVH+AD +A + P + EA
Sbjct: 15 PEDQRLDLTHLTAYAIDDAGNQDPDDAVS--LDDERIWVHVADAAALVTPESEIDIEARS 72
Query: 290 RSCTLYLPTETITMLPLELAR-DGLSLDASNGHAHVSEEENAVLALSFGFTVAEDGSLGD 466
R LY P + + MLP + GL L + ALS GF ++E G + D
Sbjct: 73 RGSNLYSPEQIVPMLPPGITHLLGLGLQQESP------------ALSIGFLLSEAGEVMD 120
Query: 467 PQVMPSLIRRPWRLTYE 517
Q+ + ++ RL+Y+
Sbjct: 121 VQMQLTRLKVE-RLSYD 136
[140][TOP]
>UniRef100_Q0JHU4 Os01g0841800 protein n=3 Tax=Oryza sativa Japonica Group
RepID=Q0JHU4_ORYSJ
Length = 548
Score = 68.9 bits (167), Expect = 2e-10
Identities = 48/162 (29%), Positives = 80/162 (49%), Gaps = 3/162 (1%)
Frame = +2
Query: 41 FSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSW-EADTGR 217
++ E+ AA LL P + + R DL L YA+D E+DDA+S GR
Sbjct: 352 YTEEVLSAAEELLVDCPDSDK----DIRKDLSTLKVYAIDVDEADELDDALSAARLPDGR 407
Query: 218 L--WVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLDASNGHAH 391
+ W+H+AD ++ ++P + EA+ R +++LPT T M P LA + +SL G
Sbjct: 408 IKVWIHVADPTSLVQPRSIIDREAMHRGTSIFLPTATFPMFPERLAMNAMSLQQGRG--- 464
Query: 392 VSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTYE 517
+++ + DGS+ + + S+I+ + LTYE
Sbjct: 465 -------CKSVTVSVILQPDGSIAEYSIENSIIKPTYMLTYE 499
[141][TOP]
>UniRef100_A1AXH8 Ribonuclease II n=1 Tax=Candidatus Ruthia magnifica str. Cm
(Calyptogena magnifica) RepID=A1AXH8_RUTMC
Length = 601
Score = 68.9 bits (167), Expect = 2e-10
Identities = 48/124 (38%), Positives = 68/124 (54%)
Frame = +2
Query: 122 RTDLRHLDSYAVDSASTFEVDDAMSWEADTGRLWVHIADVSAWLKPGEPLTTEALRRSCT 301
R DL +L SYA+D+A + + DDA+S + D +++VHIADVS G L A R+
Sbjct: 220 RVDLTYLSSYAIDNADSNDADDAISIDGD--KIFVHIADVSLIATVGSELDAYAQERASN 277
Query: 302 LYLPTETITMLPLELARDGLSLDASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMP 481
LYLP + I MLP+ + + G A S ALS GFT+ E G + +V+
Sbjct: 278 LYLPEQIIHMLPISATK-----MCALGLAETSN------ALSIGFTL-ESGEIDHIEVVH 325
Query: 482 SLIR 493
SLI+
Sbjct: 326 SLIK 329
[142][TOP]
>UniRef100_A0KG59 Ribonuclease R n=1 Tax=Aeromonas hydrophila subsp. hydrophila ATCC
7966 RepID=A0KG59_AERHH
Length = 799
Score = 68.9 bits (167), Expect = 2e-10
Identities = 46/117 (39%), Positives = 63/117 (53%), Gaps = 3/117 (2%)
Frame = +2
Query: 20 SHFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSW 199
+H P T+ E+ + GL P ++ G R DLR L +D + DDA+
Sbjct: 231 THGIPHTWPEEVTKEVAGLGEQVPEKAKEG----RIDLRALPLVTIDGEDARDFDDAVFC 286
Query: 200 EADTG---RLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGL 361
EA G RLWV IADVSA++KPG L TEA +R ++Y P + MLP E+ +GL
Sbjct: 287 EAKRGGGWRLWVAIADVSAYVKPGTALDTEAYQRGNSVYFPEFVVPMLP-EVLSNGL 342
[143][TOP]
>UniRef100_C6YKQ8 Ribonuclease R n=1 Tax=Vibrio cholerae MO10 RepID=C6YKQ8_VIBCH
Length = 821
Score = 68.9 bits (167), Expect = 2e-10
Identities = 52/168 (30%), Positives = 81/168 (48%), Gaps = 3/168 (1%)
Frame = +2
Query: 20 SHFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSW 199
+H P + E+++ GL P ++ G R DLR L +D + DDA+
Sbjct: 237 THQIPHEWPAEVEQQVAGLTEEVPEEAKQG----RVDLRALPLVTIDGEDARDFDDAVYC 292
Query: 200 EADTG---RLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLD 370
EA G RLWV IADVS +++P L EA+ R ++Y P++ + MLP L
Sbjct: 293 EAKKGGGWRLWVAIADVSYYVRPDTALDKEAINRGNSVYFPSQVVPMLPEVL-------- 344
Query: 371 ASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTY 514
SNG ++ + + L + TV+E G L + +++ RLTY
Sbjct: 345 -SNGLCSLNPQVDR-LCMVCEMTVSETGKLSGYKHYEAVMNSHARLTY 390
[144][TOP]
>UniRef100_C4UM56 Ribonuclease R n=1 Tax=Yersinia ruckeri ATCC 29473
RepID=C4UM56_YERRU
Length = 837
Score = 68.9 bits (167), Expect = 2e-10
Identities = 51/168 (30%), Positives = 80/168 (47%), Gaps = 3/168 (1%)
Frame = +2
Query: 20 SHFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSW 199
+H P T+ P++++ L P ++ G R DLR L +D + DDA+
Sbjct: 230 THEIPHTWPPQVEKQVADLKEQVPEEAKKG----RVDLRELPLVTIDGEDARDFDDAVYC 285
Query: 200 EADTG---RLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLD 370
E G RLWV IADVS +++PG L EA R ++Y P++ + MLP L
Sbjct: 286 EKKRGGGWRLWVAIADVSYYVRPGTALDAEARARGNSVYFPSQVVPMLPEVL-------- 337
Query: 371 ASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTY 514
SNG ++ + + L + TV+ G L + +++ RLTY
Sbjct: 338 -SNGLCSLNPQVDR-LCMVCEMTVSSQGKLSSYKFYEAVMSSHARLTY 383
[145][TOP]
>UniRef100_B2L1Z1 Exoribonuclease R n=1 Tax=Aeromonas hydrophila RepID=B2L1Z1_AERHY
Length = 797
Score = 68.9 bits (167), Expect = 2e-10
Identities = 46/117 (39%), Positives = 63/117 (53%), Gaps = 3/117 (2%)
Frame = +2
Query: 20 SHFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSW 199
+H P T+ E+ + GL P ++ G R DLR L +D + DDA+
Sbjct: 231 THGIPHTWPEEVTKEVAGLGEQVPEKAKEG----RIDLRALPLVTIDGEDARDFDDAVFC 286
Query: 200 EADTG---RLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGL 361
EA G RLWV IADVSA++KPG L TEA +R ++Y P + MLP E+ +GL
Sbjct: 287 EAKRGGGWRLWVAIADVSAYVKPGTALDTEAYQRGNSVYFPEFVVPMLP-EVLSNGL 342
[146][TOP]
>UniRef100_A3GU97 Ribonuclease R (Fragment) n=1 Tax=Vibrio cholerae NCTC 8457
RepID=A3GU97_VIBCH
Length = 531
Score = 68.9 bits (167), Expect = 2e-10
Identities = 52/168 (30%), Positives = 81/168 (48%), Gaps = 3/168 (1%)
Frame = +2
Query: 20 SHFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSW 199
+H P + E+++ GL P ++ G R DLR L +D + DDA+
Sbjct: 92 THQIPHEWPAEVEQQVAGLTEEVPEEAKQG----RVDLRALPLVTIDGEDARDFDDAVYC 147
Query: 200 EADTG---RLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLD 370
EA G RLWV IADVS +++P L EA+ R ++Y P++ + MLP L
Sbjct: 148 EAKKGGGWRLWVAIADVSYYVRPDTALDKEAINRGNSVYFPSQVVPMLPEVL-------- 199
Query: 371 ASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTY 514
SNG ++ + + L + TV+E G L + +++ RLTY
Sbjct: 200 -SNGLCSLNPQVDR-LCMVCEMTVSETGKLSGYKHYEAVMNSHARLTY 245
[147][TOP]
>UniRef100_A1FAX0 Ribonuclease R (Fragment) n=1 Tax=Vibrio cholerae 2740-80
RepID=A1FAX0_VIBCH
Length = 415
Score = 68.9 bits (167), Expect = 2e-10
Identities = 52/168 (30%), Positives = 81/168 (48%), Gaps = 3/168 (1%)
Frame = +2
Query: 20 SHFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSW 199
+H P + E+++ GL P ++ G R DLR L +D + DDA+
Sbjct: 199 THQIPHEWPAEVEQQVAGLTEEVPEEAKQG----RVDLRALPLVTIDGEDARDFDDAVYC 254
Query: 200 EADTG---RLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLD 370
EA G RLWV IADVS +++P L EA+ R ++Y P++ + MLP L
Sbjct: 255 EAKKGGGWRLWVAIADVSYYVRPDTALDKEAINRGNSVYFPSQVVPMLPEVL-------- 306
Query: 371 ASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTY 514
SNG ++ + + L + TV+E G L + +++ RLTY
Sbjct: 307 -SNGLCSLNPQVDR-LCMVCEMTVSETGKLSGYKHYEAVMNSHARLTY 352
[148][TOP]
>UniRef100_A5F552 Ribonuclease R n=9 Tax=Vibrio cholerae RepID=A5F552_VIBC3
Length = 821
Score = 68.9 bits (167), Expect = 2e-10
Identities = 52/168 (30%), Positives = 81/168 (48%), Gaps = 3/168 (1%)
Frame = +2
Query: 20 SHFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSW 199
+H P + E+++ GL P ++ G R DLR L +D + DDA+
Sbjct: 237 THQIPHEWPAEVEQQVAGLTEEVPEEAKQG----RVDLRALPLVTIDGEDARDFDDAVYC 292
Query: 200 EADTG---RLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLD 370
EA G RLWV IADVS +++P L EA+ R ++Y P++ + MLP L
Sbjct: 293 EAKKGGGWRLWVAIADVSYYVRPDTALDKEAINRGNSVYFPSQVVPMLPEVL-------- 344
Query: 371 ASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTY 514
SNG ++ + + L + TV+E G L + +++ RLTY
Sbjct: 345 -SNGLCSLNPQVDR-LCMVCEMTVSETGKLSGYKHYEAVMNSHARLTY 390
[149][TOP]
>UniRef100_B9EUD2 Putative uncharacterized protein n=2 Tax=Oryza sativa
RepID=B9EUD2_ORYSJ
Length = 774
Score = 68.9 bits (167), Expect = 2e-10
Identities = 48/162 (29%), Positives = 80/162 (49%), Gaps = 3/162 (1%)
Frame = +2
Query: 41 FSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSW-EADTGR 217
++ E+ AA LL P + + R DL L YA+D E+DDA+S GR
Sbjct: 347 YTEEVLSAAEELLVDCPDSDK----DIRKDLSTLKVYAIDVDEADELDDALSAARLPDGR 402
Query: 218 L--WVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLDASNGHAH 391
+ W+H+AD ++ ++P + EA+ R +++LPT T M P LA + +SL G
Sbjct: 403 IKVWIHVADPTSLVQPRSIIDREAMHRGTSIFLPTATFPMFPERLAMNAMSLQQGRG--- 459
Query: 392 VSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTYE 517
+++ + DGS+ + + S+I+ + LTYE
Sbjct: 460 -------CKSVTVSVILQPDGSIAEYSIENSIIKPTYMLTYE 494
[150][TOP]
>UniRef100_Q9KNY1 Ribonuclease R n=8 Tax=Vibrio cholerae RepID=RNR_VIBCH
Length = 821
Score = 68.9 bits (167), Expect = 2e-10
Identities = 52/168 (30%), Positives = 81/168 (48%), Gaps = 3/168 (1%)
Frame = +2
Query: 20 SHFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSW 199
+H P + E+++ GL P ++ G R DLR L +D + DDA+
Sbjct: 237 THQIPHEWPAEVEQQVAGLTEEVPEEAKQG----RVDLRALPLVTIDGEDARDFDDAVYC 292
Query: 200 EADTG---RLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLD 370
EA G RLWV IADVS +++P L EA+ R ++Y P++ + MLP L
Sbjct: 293 EAKKGGGWRLWVAIADVSYYVRPDTALDKEAINRGNSVYFPSQVVPMLPEVL-------- 344
Query: 371 ASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTY 514
SNG ++ + + L + TV+E G L + +++ RLTY
Sbjct: 345 -SNGLCSLNPQVDR-LCMVCEMTVSETGKLSGYKHYEAVMNSHARLTY 390
[151][TOP]
>UniRef100_B8DP48 Ribonuclease R n=1 Tax=Desulfovibrio vulgaris str. 'Miyazaki F'
RepID=B8DP48_DESVM
Length = 1037
Score = 68.6 bits (166), Expect = 2e-10
Identities = 56/170 (32%), Positives = 79/170 (46%), Gaps = 2/170 (1%)
Frame = +2
Query: 11 LRASHFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDA 190
++ +H P F PE+ E A L P R DLRHL+ +D A + DDA
Sbjct: 223 VKINHDVPGDFPPEVLEEARDL----PAVPGRDDMEGRIDLRHLEFVTIDGAKARDFDDA 278
Query: 191 MSWEAD-TG-RLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLS 364
+ E TG RLWV IADV+ +++PG + EA RS + Y P MLP L
Sbjct: 279 VYVEEQGTGYRLWVAIADVAHYVRPGSAMDREAQARSNSYYFPQSVEPMLPEAL------ 332
Query: 365 LDASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTY 514
SNG ++ + ++ F A DG+ G + ++I RLTY
Sbjct: 333 ---SNGLCSLNPRVPRLAMVAETFFYA-DGTPGRSKFYAAIIESKARLTY 378
[152][TOP]
>UniRef100_A1RNJ3 RNAse R n=2 Tax=Shewanella RepID=A1RNJ3_SHESW
Length = 807
Score = 68.6 bits (166), Expect = 2e-10
Identities = 52/164 (31%), Positives = 78/164 (47%), Gaps = 3/164 (1%)
Frame = +2
Query: 32 PPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSWEADT 211
P T+SP +++ + A +VG R DLRHL +D + DDA+ E
Sbjct: 234 PHTWSPVIEKKLRRIPDEVTEADKVG----RVDLRHLPLVTIDGEDARDFDDAVYAEKKA 289
Query: 212 G---RLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLDASNG 382
G RLWV IADVS +++ L TEA R ++Y P++ I MLP +++ SL
Sbjct: 290 GGGWRLWVAIADVSYYVRTDSALDTEARARGNSVYFPSQVIPMLPEKISNGLCSL----- 344
Query: 383 HAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTY 514
+ HV L + TV+ G L + P+++ R TY
Sbjct: 345 NPHVDR-----LCMVAEMTVSAKGKLSGYKFYPAVMYSHARFTY 383
[153][TOP]
>UniRef100_B6AMJ8 Exoribonuclease II n=1 Tax=Leptospirillum sp. Group II '5-way CG'
RepID=B6AMJ8_9BACT
Length = 744
Score = 68.6 bits (166), Expect = 2e-10
Identities = 46/141 (32%), Positives = 68/141 (48%), Gaps = 3/141 (2%)
Frame = +2
Query: 101 EVGPSACRTDLRHLDSYAVDSASTFEVDDAMSWEAD---TGRLWVHIADVSAWLKPGEPL 271
EV PS R DLRHL+ +D + DDA+S T ++ +HIADV+A++ PG L
Sbjct: 246 EVEPSENRVDLRHLEIMTIDGDRARDFDDALSVVESPDGTFQIGIHIADVAAYVLPGSEL 305
Query: 272 TTEALRRSCTLYLPTETITMLPLELARDGLSLDASNGHAHVSEEENAVLALSFGFTVAED 451
EA RR ++Y P + M P L+ LSL+ LA + ++
Sbjct: 306 DKEAFRRGTSVYFPDRVVPMFPEVLSNGVLSLNPDEDR----------LARTVMVRMSPA 355
Query: 452 GSLGDPQVMPSLIRRPWRLTY 514
G + + + S+IR R TY
Sbjct: 356 GQVLESSIFRSVIRSRLRATY 376
[154][TOP]
>UniRef100_B5JY34 Ribonuclease R n=1 Tax=gamma proteobacterium HTCC5015
RepID=B5JY34_9GAMM
Length = 762
Score = 68.6 bits (166), Expect = 2e-10
Identities = 46/119 (38%), Positives = 62/119 (52%), Gaps = 2/119 (1%)
Frame = +2
Query: 20 SHFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSW 199
SH P F E+ E +N L A + G RTD RHL +D + DDA+
Sbjct: 256 SHNLPNEFPEEVLEESNALGDVVDEADKQG----RTDYRHLPLITIDGEDAKDFDDAVYA 311
Query: 200 EADTG--RLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLD 370
EA+ RL+V IADVS ++KP PL EA +R+ ++Y P I MLP L+ SL+
Sbjct: 312 EANEQGWRLYVAIADVSHYVKPQSPLDQEAAKRATSVYFPGRVIPMLPESLSNGLCSLN 370
[155][TOP]
>UniRef100_A2V290 Ribonuclease R n=1 Tax=Shewanella putrefaciens 200
RepID=A2V290_SHEPU
Length = 807
Score = 68.6 bits (166), Expect = 2e-10
Identities = 52/164 (31%), Positives = 78/164 (47%), Gaps = 3/164 (1%)
Frame = +2
Query: 32 PPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSWEADT 211
P T+SP +++ + A +VG R DLRHL +D + DDA+ E
Sbjct: 234 PHTWSPVIEKKLRRIPDEVTEADKVG----RVDLRHLPLVTIDGEDARDFDDAVYAEKKA 289
Query: 212 G---RLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLDASNG 382
G RLWV IADVS +++ L TEA R ++Y P++ I MLP +++ SL
Sbjct: 290 GGGWRLWVAIADVSYYVRTDSALDTEARARGNSVYFPSQVIPMLPEKISNGLCSL----- 344
Query: 383 HAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTY 514
+ HV L + TV+ G L + P+++ R TY
Sbjct: 345 NPHVDR-----LCMVAEMTVSAKGKLSGYKFYPAVMYSHARFTY 383
[156][TOP]
>UniRef100_Q5L6M9 Putative ribonuclease n=1 Tax=Chlamydophila abortus
RepID=Q5L6M9_CHLAB
Length = 682
Score = 68.2 bits (165), Expect = 3e-10
Identities = 47/135 (34%), Positives = 69/135 (51%), Gaps = 3/135 (2%)
Frame = +2
Query: 122 RTDLRHLDSYAVDSASTFEVDDAMSWEADTGR---LWVHIADVSAWLKPGEPLTTEALRR 292
R DLR L + +DS + + DDA+S D L VHIADVS ++ P L EA +R
Sbjct: 207 RKDLRDLLCFTIDSITAKDFDDAVSLTYDNNDNYILGVHIADVSHYVTPHSALDQEASKR 266
Query: 293 SCTLYLPTETITMLPLELARDGLSLDASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQ 472
++Y P + I MLP L+ + SL + LA+S T + G L D +
Sbjct: 267 CNSIYFPGKVIPMLPPALSDNLCSLKPNVDR----------LAVSVFMTFTKSGHLSDYE 316
Query: 473 VMPSLIRRPWRLTYE 517
+ S+IR +R+TY+
Sbjct: 317 IFRSVIRSKYRMTYD 331
[157][TOP]
>UniRef100_B3E785 Ribonuclease R n=1 Tax=Geobacter lovleyi SZ RepID=B3E785_GEOLS
Length = 752
Score = 68.2 bits (165), Expect = 3e-10
Identities = 54/165 (32%), Positives = 77/165 (46%), Gaps = 4/165 (2%)
Frame = +2
Query: 32 PPTFSPELQEAANGLLSAGPLASEVGPSAC--RTDLRHLDSYAVDSASTFEVDDAMS--W 199
P TF PE L A + S+VG + R DLR L + +D + + DDA+S
Sbjct: 219 PHTFEPET------LAEAQAIPSQVGKNDLKDRVDLRKLPTVTIDGETAKDFDDAVSIRQ 272
Query: 200 EADTGRLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLDASN 379
E RLWV IADVS +++PG L EA R ++Y P I MLP L+ SL
Sbjct: 273 EGHNFRLWVSIADVSHYIEPGSMLDREAYLRGTSVYFPDRCIPMLPERLSNGICSL---- 328
Query: 380 GHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTY 514
+ H+ L ++ + G + + S+I+ RLTY
Sbjct: 329 -NPHLDR-----LTMTAEMLFDQQGRMLESSFYSSVIKSDARLTY 367
[158][TOP]
>UniRef100_B1IDC1 Ribonuclease R n=1 Tax=Clostridium botulinum B1 str. Okra
RepID=B1IDC1_CLOBK
Length = 725
Score = 68.2 bits (165), Expect = 3e-10
Identities = 54/164 (32%), Positives = 83/164 (50%), Gaps = 3/164 (1%)
Frame = +2
Query: 32 PPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSWEADT 211
P F P++Q A+ + A P R DLR L +D ++DDA+S E +
Sbjct: 218 PEEFPPKVQSYADNISEAIPEEEYKR----REDLRDLTIVTIDGEDAKDLDDAISLEKLS 273
Query: 212 GR---LWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLDASNG 382
L VHIADVS ++K PL EAL+R+ ++YL I MLP +L SNG
Sbjct: 274 NGNYYLGVHIADVSHYVKEKNPLDKEALKRATSVYLIDRVIPMLPKKL---------SNG 324
Query: 383 HAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTY 514
++ + + L LS + ++G + D +V+ S+I+ R+TY
Sbjct: 325 ICSLNPKIDR-LTLSCFMEIDKNGKVVDHRVVESIIKSTERMTY 367
[159][TOP]
>UniRef100_A9L116 Ribonuclease R n=1 Tax=Shewanella baltica OS195 RepID=A9L116_SHEB9
Length = 807
Score = 68.2 bits (165), Expect = 3e-10
Identities = 52/164 (31%), Positives = 78/164 (47%), Gaps = 3/164 (1%)
Frame = +2
Query: 32 PPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSWEADT 211
P T+SP +++ + A +VG R DLRHL +D + DDA+ E
Sbjct: 234 PHTWSPVIEKKLRRIPDEVTDADKVG----RVDLRHLPLVTIDGEDARDFDDAVYAEKKA 289
Query: 212 G---RLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLDASNG 382
G RLWV IADVS +++ L TEA R ++Y P++ I MLP +++ SL
Sbjct: 290 GGGWRLWVAIADVSYYVRTDSALDTEARARGNSVYFPSQVIPMLPEKISNGLCSL----- 344
Query: 383 HAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTY 514
+ HV L + TV+ G L + P+++ R TY
Sbjct: 345 NPHVDR-----LCMVAEMTVSAKGKLSGYKFYPAVMYSHARFTY 383
[160][TOP]
>UniRef100_A7G9Y5 Ribonuclease R n=1 Tax=Clostridium botulinum F str. Langeland
RepID=A7G9Y5_CLOBL
Length = 725
Score = 68.2 bits (165), Expect = 3e-10
Identities = 54/164 (32%), Positives = 83/164 (50%), Gaps = 3/164 (1%)
Frame = +2
Query: 32 PPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSWEADT 211
P F P++Q A+ + A P R DLR L +D ++DDA+S E +
Sbjct: 218 PEEFPPKVQSYADNISEAIPEEEYKR----REDLRDLTIVTIDGEDAKDLDDAISLEKLS 273
Query: 212 GR---LWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLDASNG 382
L VHIADVS ++K PL EAL+R+ ++YL I MLP +L SNG
Sbjct: 274 NGNYYLGVHIADVSHYVKEKNPLDKEALKRATSVYLIDRVIPMLPKKL---------SNG 324
Query: 383 HAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTY 514
++ + + L LS + ++G + D +V+ S+I+ R+TY
Sbjct: 325 ICSLNPKIDR-LTLSCFMEIDKNGKVVDHRVVESIIKSTERMTY 367
[161][TOP]
>UniRef100_A6WJ75 Ribonuclease R n=2 Tax=Shewanella baltica RepID=A6WJ75_SHEB8
Length = 807
Score = 68.2 bits (165), Expect = 3e-10
Identities = 52/164 (31%), Positives = 78/164 (47%), Gaps = 3/164 (1%)
Frame = +2
Query: 32 PPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSWEADT 211
P T+SP +++ + A +VG R DLRHL +D + DDA+ E
Sbjct: 234 PHTWSPVIEKKLRRIPDEVTDADKVG----RVDLRHLPLVTIDGEDARDFDDAVYAEKKA 289
Query: 212 G---RLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLDASNG 382
G RLWV IADVS +++ L TEA R ++Y P++ I MLP +++ SL
Sbjct: 290 GGGWRLWVAIADVSYYVRTDSALDTEARARGNSVYFPSQVIPMLPEKISNGLCSL----- 344
Query: 383 HAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTY 514
+ HV L + TV+ G L + P+++ R TY
Sbjct: 345 NPHVDR-----LCMVAEMTVSAKGKLSGYKFYPAVMYSHARFTY 383
[162][TOP]
>UniRef100_A5GLA4 Exoribonuclease R/ribonuclease II n=1 Tax=Synechococcus sp. WH 7803
RepID=A5GLA4_SYNPW
Length = 649
Score = 68.2 bits (165), Expect = 3e-10
Identities = 44/114 (38%), Positives = 60/114 (52%), Gaps = 3/114 (2%)
Frame = +2
Query: 41 FSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSWEA---DT 211
FS EL A L+ + ++ G S R DL HL +D A T ++DDA+ E D
Sbjct: 220 FSAELTAEAERLMRCS-MQAQPGDSE-RRDLTHLACVTIDDAETKDIDDALGLERLANDH 277
Query: 212 GRLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLDA 373
R+W+HIAD S + G PL EA RR +LYL + M P +L+ + SL A
Sbjct: 278 LRIWIHIADPSRLITAGSPLDLEARRRGSSLYLSRGLLPMFPSKLSSEVFSLKA 331
[163][TOP]
>UniRef100_C2ECN9 Ribonuclease R 1 n=1 Tax=Lactobacillus ruminis ATCC 25644
RepID=C2ECN9_9LACO
Length = 793
Score = 68.2 bits (165), Expect = 3e-10
Identities = 45/134 (33%), Positives = 71/134 (52%), Gaps = 3/134 (2%)
Frame = +2
Query: 122 RTDLRHLDSYAVDSASTFEVDDAMS-WEADTGR--LWVHIADVSAWLKPGEPLTTEALRR 292
R D+R +D+ + ++DDA++ W+ G L VHIADVS ++ PG PL EA R
Sbjct: 261 RRDIRDQQLVTIDAIESKDLDDAVTAWKLPNGNYHLGVHIADVSHYVTPGTPLDDEAFSR 320
Query: 293 SCTLYLPTETITMLPLELARDGLSLDASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQ 472
++YL I MLP +L SNG ++ + + LALS + +G + +
Sbjct: 321 GTSVYLTDRVIPMLPAKL---------SNGICSLNPKVDR-LALSCDMEITPEGEIIAHE 370
Query: 473 VMPSLIRRPWRLTY 514
+ PS+I+ R+TY
Sbjct: 371 IYPSVIKTTERMTY 384
[164][TOP]
>UniRef100_C1FQW8 Ribonuclease R n=2 Tax=Clostridium botulinum RepID=C1FQW8_CLOBJ
Length = 725
Score = 68.2 bits (165), Expect = 3e-10
Identities = 54/164 (32%), Positives = 83/164 (50%), Gaps = 3/164 (1%)
Frame = +2
Query: 32 PPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSWEADT 211
P F P++Q A+ + A P R DLR L +D ++DDA+S E +
Sbjct: 218 PEEFPPKVQSYADNISEAIPEEEYKR----REDLRDLTIVTIDGEDAKDLDDAISLEKLS 273
Query: 212 GR---LWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLDASNG 382
L VHIADVS ++K PL EAL+R+ ++YL I MLP +L SNG
Sbjct: 274 NGNYYLGVHIADVSHYVKEKNPLDKEALKRATSVYLIDRVIPMLPKKL---------SNG 324
Query: 383 HAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTY 514
++ + + L LS + ++G + D +V+ S+I+ R+TY
Sbjct: 325 ICSLNPKIDR-LTLSCFMEIDKNGKVVDHRVVESIIKSTERMTY 367
[165][TOP]
>UniRef100_A4BI97 Exoribonuclease R n=1 Tax=Reinekea blandensis MED297
RepID=A4BI97_9GAMM
Length = 647
Score = 68.2 bits (165), Expect = 3e-10
Identities = 56/164 (34%), Positives = 81/164 (49%), Gaps = 2/164 (1%)
Frame = +2
Query: 32 PPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAM-SWEAD 208
P FS + A L AGP E PS R DL L +D+AST ++DDA+ + +
Sbjct: 182 PEAFSDAELKQAKALAEAGP---ETDPS--RQDLTDLPFVTIDAASTKDMDDALFARPTE 236
Query: 209 TG-RLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLDASNGH 385
G +L V IAD SA++ L A +R T YLP T+ MLP LA +SL
Sbjct: 237 NGWQLSVAIADASAYIPLDSELDKAAQKRLTTTYLPGLTLPMLPEILADSAMSL------ 290
Query: 386 AHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTYE 517
V +E A+ F + DG++ D ++ P+ +R +L Y+
Sbjct: 291 --VPDETRP--AMIFQMQIDRDGNVSDFEIFPATVRSQAKLAYD 330
[166][TOP]
>UniRef100_UPI000179487B hypothetical protein CLOSPO_00726 n=1 Tax=Clostridium sporogenes
ATCC 15579 RepID=UPI000179487B
Length = 725
Score = 67.8 bits (164), Expect = 4e-10
Identities = 54/164 (32%), Positives = 82/164 (50%), Gaps = 3/164 (1%)
Frame = +2
Query: 32 PPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSWEA-- 205
P F P++Q A+ + A P R DLR L +D ++DDA+S E
Sbjct: 218 PEEFPPKVQSYADNISEAIPEEEYKR----RKDLRDLTIVTIDGEDAKDLDDAISLERLP 273
Query: 206 -DTGRLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLDASNG 382
L VHIADVS ++K PL EAL+R+ ++YL I MLP +L SNG
Sbjct: 274 NGNYYLGVHIADVSHYVKEKNPLDKEALKRATSVYLIDRVIPMLPKKL---------SNG 324
Query: 383 HAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTY 514
++ + + L LS + ++G + D +V+ S+I+ R+TY
Sbjct: 325 ICSLNPKIDR-LTLSCFMEIDKNGKVVDHKVVESIIKSTERMTY 367
[167][TOP]
>UniRef100_Q3B5H6 3'-5' exoribonuclease, VacB and RNase II n=1 Tax=Chlorobium
luteolum DSM 273 RepID=Q3B5H6_PELLD
Length = 762
Score = 67.8 bits (164), Expect = 4e-10
Identities = 52/163 (31%), Positives = 77/163 (47%), Gaps = 3/163 (1%)
Frame = +2
Query: 38 TFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSWEADTGR 217
TF E+ +AA+ + G ++ R D+R + +D + DDA+S E
Sbjct: 269 TFDKEIVKAASAM-KMGVTDKDLQE---RLDVRDKVLFTIDPVDAKDFDDALSVEPLENG 324
Query: 218 LW---VHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLDASNGHA 388
LW VHIADVS ++ PL EAL+R+ ++YL I MLP L+ D SL+
Sbjct: 325 LWKIGVHIADVSHYVTEDSPLDKEALKRATSVYLVDRVIPMLPSRLSEDICSLNPGVDR- 383
Query: 389 HVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTYE 517
+A S FT+ EDG + + ++I R TYE
Sbjct: 384 ---------MAFSVFFTMTEDGKVQKHEFHKTVIHSKRRFTYE 417
[168][TOP]
>UniRef100_Q2NW57 Ribonuclease R (RNase R) n=1 Tax=Sodalis glossinidius str.
'morsitans' RepID=Q2NW57_SODGM
Length = 764
Score = 67.8 bits (164), Expect = 4e-10
Identities = 52/169 (30%), Positives = 81/169 (47%), Gaps = 4/169 (2%)
Frame = +2
Query: 20 SHFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSW 199
+H P + PE+++ L P A++ G R DLR L +D + DDA+
Sbjct: 230 THDIPYVWPPEVEQQLADLQEDVPEAAKRG----RIDLRALPLVTIDGEDARDFDDAVYC 285
Query: 200 EADTG----RLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSL 367
E RLWV IADVS +++P PL EA RR+ ++Y P++ I MLP L
Sbjct: 286 EKKRSGGGWRLWVAIADVSYYVRPHTPLDQEASRRATSVYFPSQVIPMLPEVL------- 338
Query: 368 DASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTY 514
SNG ++ + + L + T++ G L + +++ RLTY
Sbjct: 339 --SNGLCSLNPQVDR-LCMVCEMTISAQGRLSSYKFYEAVMNSHARLTY 384
[169][TOP]
>UniRef100_Q01VX0 RNAse R n=1 Tax=Candidatus Solibacter usitatus Ellin6076
RepID=Q01VX0_SOLUE
Length = 762
Score = 67.8 bits (164), Expect = 4e-10
Identities = 55/168 (32%), Positives = 79/168 (47%), Gaps = 4/168 (2%)
Frame = +2
Query: 23 HFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSW- 199
H P F PE+ E A + P A G R D R +D +D + + DDA+ W
Sbjct: 238 HHLPHQFPPEVIEQAQAIPGVIPPAEFEG----RRDFRGMDIVTIDGETARDFDDAV-WV 292
Query: 200 -EADTGR--LWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLD 370
+ +G L VHIADVS +++PG P+ EAL R ++Y P + MLP EL+ + SL
Sbjct: 293 DKLPSGNYVLHVHIADVSHYVRPGTPIDREALLRGTSVYFPDRAVPMLPFELSTNLCSL- 351
Query: 371 ASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTY 514
V E+ L LS + G + + +IR R+TY
Sbjct: 352 -------VPLEDR--LVLSALMEIDHRGEVVRQEFTEGVIRSVARMTY 390
[170][TOP]
>UniRef100_C6CKZ7 Ribonuclease R n=1 Tax=Dickeya zeae Ech1591 RepID=C6CKZ7_DICZE
Length = 822
Score = 67.8 bits (164), Expect = 4e-10
Identities = 51/168 (30%), Positives = 80/168 (47%), Gaps = 3/168 (1%)
Frame = +2
Query: 20 SHFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSW 199
+H P ++ P+++E + L P ++ G R DLR L +D + DDA+
Sbjct: 230 THEIPHSWPPKVEEQVSDLTDEVPENAKKG----RVDLRALPLVTIDGEDARDFDDAVYC 285
Query: 200 EADTG---RLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLD 370
E G RLWV IADVS +++PG L EA R ++Y P++ + MLP L
Sbjct: 286 EKKRGGGWRLWVAIADVSYYVRPGTALDHEARARGTSVYFPSQVVPMLPEVL-------- 337
Query: 371 ASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTY 514
SNG ++ + + L + TV+ G L +++ RLTY
Sbjct: 338 -SNGLCSLNPQVDR-LCMVCEMTVSSQGKLSGYTFYEAVMSSHARLTY 383
[171][TOP]
>UniRef100_C6CAC4 Ribonuclease R n=1 Tax=Dickeya dadantii Ech703 RepID=C6CAC4_DICDC
Length = 819
Score = 67.8 bits (164), Expect = 4e-10
Identities = 52/168 (30%), Positives = 80/168 (47%), Gaps = 3/168 (1%)
Frame = +2
Query: 20 SHFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSW 199
+H P T+S ++Q L P +++ G R DLR L +D + DDA+
Sbjct: 230 THEIPHTWSQQVQNQVADLTEEVPESAKKG----RVDLRTLPLVTIDGEDARDFDDAVYC 285
Query: 200 EADTG---RLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLD 370
E G RLWV IADVS +++PG L EA R ++Y P++ + MLP L
Sbjct: 286 EKKRGGGWRLWVAIADVSYYVRPGTALDHEARARGTSVYFPSQVVPMLPEVL-------- 337
Query: 371 ASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTY 514
SNG ++ + + L + TV+ G L + +++ RLTY
Sbjct: 338 -SNGLCSLNPQVDR-LCMVCEMTVSTQGKLSGFKFYEAVMSSHARLTY 383
[172][TOP]
>UniRef100_B1KTK0 Ribonuclease R n=1 Tax=Clostridium botulinum A3 str. Loch Maree
RepID=B1KTK0_CLOBM
Length = 725
Score = 67.8 bits (164), Expect = 4e-10
Identities = 54/164 (32%), Positives = 82/164 (50%), Gaps = 3/164 (1%)
Frame = +2
Query: 32 PPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSWEADT 211
P F P++Q A+ + A P R DLR L +D ++DDA+S E +
Sbjct: 218 PEEFPPKVQSYADNISEAIPEEEYKR----REDLRDLTIVTIDGEDAKDLDDAISLEKLS 273
Query: 212 GR---LWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLDASNG 382
L VHIADVS ++K PL EAL+R+ ++YL I MLP +L SNG
Sbjct: 274 NGNYYLGVHIADVSHYVKEKNPLDKEALKRATSVYLIDRVIPMLPKKL---------SNG 324
Query: 383 HAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTY 514
++ + + L LS + + G + D +V+ S+I+ R+TY
Sbjct: 325 ICSLNPKIDR-LTLSCFMEIDKSGKVVDHRVVESIIKSTERMTY 367
[173][TOP]
>UniRef100_A8G8V6 Ribonuclease R n=1 Tax=Serratia proteamaculans 568
RepID=A8G8V6_SERP5
Length = 828
Score = 67.8 bits (164), Expect = 4e-10
Identities = 51/168 (30%), Positives = 80/168 (47%), Gaps = 3/168 (1%)
Frame = +2
Query: 20 SHFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSW 199
+H P + P++++ L P A++ G R DLR L +D + DDA+
Sbjct: 230 THEIPHVWPPQVEKQVADLSEQVPEAAKKG----RVDLRQLPLVTIDGEDARDFDDAVYC 285
Query: 200 EADTG---RLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLD 370
E G RLWV IADVS +++P L EA R+ ++Y P+E I MLP L
Sbjct: 286 EKKRGGGWRLWVAIADVSYYVRPRTALDDEARNRATSVYFPSEVIPMLPEVL-------- 337
Query: 371 ASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTY 514
SNG ++ + + L + T++ G L + +++ RLTY
Sbjct: 338 -SNGLCSLNPQVDR-LCMVCEMTISAQGRLSTAKFYEAVMSSHARLTY 383
[174][TOP]
>UniRef100_A5HYC5 Ribonuclease R n=2 Tax=Clostridium botulinum A RepID=A5HYC5_CLOBH
Length = 725
Score = 67.8 bits (164), Expect = 4e-10
Identities = 54/164 (32%), Positives = 82/164 (50%), Gaps = 3/164 (1%)
Frame = +2
Query: 32 PPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSWEA-- 205
P F P++Q A+ + A P R DLR L +D ++DDA+S E
Sbjct: 218 PEEFPPKVQSYADNISEAIPEEEYKR----REDLRDLTIVTIDGEDAKDLDDAISLEKLP 273
Query: 206 -DTGRLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLDASNG 382
L VHIADVS ++K PL EAL+R+ ++YL I MLP +L SNG
Sbjct: 274 NGNYYLGVHIADVSHYVKEKNPLDKEALKRATSVYLIDRVIPMLPKKL---------SNG 324
Query: 383 HAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTY 514
++ + + L LS + ++G + D +V+ S+I+ R+TY
Sbjct: 325 ICSLNPKIDR-LTLSCFMEIDKNGKVVDHRVVESIIKSTERMTY 367
[175][TOP]
>UniRef100_C9PK35 Ribonuclease R n=1 Tax=Vibrio furnissii CIP 102972
RepID=C9PK35_VIBFU
Length = 816
Score = 67.8 bits (164), Expect = 4e-10
Identities = 50/168 (29%), Positives = 81/168 (48%), Gaps = 3/168 (1%)
Frame = +2
Query: 20 SHFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSW 199
+H P + E+++ GL P ++ G R DLR L +D + DDA+
Sbjct: 237 THQIPHVWPQEVEQQITGLGEEVPEEAKQG----RVDLRALPLVTIDGEDARDFDDAVFC 292
Query: 200 EADTG---RLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLD 370
EA G RLWV IADVS +++P L EA+ R ++Y P++ + MLP L
Sbjct: 293 EAKKGGGWRLWVAIADVSYYVRPNSALDKEAINRGNSVYFPSQVVPMLPEVL-------- 344
Query: 371 ASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTY 514
SNG ++ + + L + T+++ G L + +++ RLTY
Sbjct: 345 -SNGLCSLNPQVDR-LCMVCEMTISDKGKLSGYKHYEAVMNSHARLTY 390
[176][TOP]
>UniRef100_C9P233 Ribonuclease R n=1 Tax=Vibrio metschnikovii CIP 69.14
RepID=C9P233_VIBME
Length = 815
Score = 67.8 bits (164), Expect = 4e-10
Identities = 52/168 (30%), Positives = 81/168 (48%), Gaps = 3/168 (1%)
Frame = +2
Query: 20 SHFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSW 199
+H P + E+ + +GL P ++ G R DLR L +D + DDA+
Sbjct: 237 THQIPHEWPDEVLKQVSGLKEEVPEEAKQG----RVDLRQLPLVTIDGEDARDFDDAVYC 292
Query: 200 EADTG---RLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLD 370
EA RLWV IADVS +++PG L EA R ++Y P++ + MLP L
Sbjct: 293 EARKEGGWRLWVAIADVSYYVRPGSALDKEATNRGNSVYFPSQVVPMLPEVL-------- 344
Query: 371 ASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTY 514
SNG ++ + + L + T+++ G L D Q +++ RLTY
Sbjct: 345 -SNGLCSLNPQVDR-LCMVCEMTISDGGKLIDYQHYEAVMSSHARLTY 390
[177][TOP]
>UniRef100_C8N9X2 Ribonuclease R n=1 Tax=Cardiobacterium hominis ATCC 15826
RepID=C8N9X2_9GAMM
Length = 831
Score = 67.8 bits (164), Expect = 4e-10
Identities = 47/134 (35%), Positives = 67/134 (50%), Gaps = 2/134 (1%)
Frame = +2
Query: 122 RTDLRHLDSYAVDSASTFEVDDAMSWE--ADTGRLWVHIADVSAWLKPGEPLTTEALRRS 295
R DLRHL +D S + DDA+ E + RL+V IADV+ +++P PL EA R
Sbjct: 272 RLDLRHLPFVTIDGISARDFDDAVYAEKRGENYRLYVAIADVAHYVRPDSPLDIEAYNRG 331
Query: 296 CTLYLPTETITMLPLELARDGLSLDASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQV 475
++Y P I MLP +L+ SL+ + LA+ T+A DGS+
Sbjct: 332 TSVYFPDRVIPMLPEKLSNGLCSLNPNVDR----------LAMVCEITLAPDGSIKRSAF 381
Query: 476 MPSLIRRPWRLTYE 517
++I RLTYE
Sbjct: 382 HDAVIHSHARLTYE 395
[178][TOP]
>UniRef100_C7HG56 Ribonuclease R n=1 Tax=Clostridium thermocellum DSM 2360
RepID=C7HG56_CLOTM
Length = 757
Score = 67.8 bits (164), Expect = 4e-10
Identities = 48/134 (35%), Positives = 69/134 (51%), Gaps = 3/134 (2%)
Frame = +2
Query: 122 RTDLRHLDSYAVDSASTFEVDDAMSWEA---DTGRLWVHIADVSAWLKPGEPLTTEALRR 292
R DLR L +D ++DDA+S E RL VHIADVS ++K G PL EAL+R
Sbjct: 246 RRDLRDLTMVTIDGEDAKDLDDAVSIERLPNGNYRLGVHIADVSYYVKEGSPLDKEALKR 305
Query: 293 SCTLYLPTETITMLPLELARDGLSLDASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQ 472
++YL I MLP EL SNG ++ + + LA + + + G + D +
Sbjct: 306 GTSVYLVDRVIPMLPKEL---------SNGICSLNPKVDR-LAFTVMMEIDKSGRVVDHE 355
Query: 473 VMPSLIRRPWRLTY 514
+ S+I R+TY
Sbjct: 356 IFESVINVNERMTY 369
[179][TOP]
>UniRef100_A4CUF3 Exoribonuclease II n=1 Tax=Synechococcus sp. WH 7805
RepID=A4CUF3_SYNPV
Length = 651
Score = 67.8 bits (164), Expect = 4e-10
Identities = 51/159 (32%), Positives = 69/159 (43%), Gaps = 3/159 (1%)
Frame = +2
Query: 50 ELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSWEA---DTGRL 220
E + NG L P SE R DL H +D A T ++DDA+ E D R+
Sbjct: 229 EAERVLNGCLDDHPGDSE------RIDLTHQTCVTIDDAETRDIDDALGLERLADDQLRI 282
Query: 221 WVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLDASNGHAHVSE 400
W+HIAD + G PL EA RR +LYL + M P L+ + SL A +A
Sbjct: 283 WIHIADPGRLITTGSPLDLEARRRGSSLYLARGILPMFPSNLSTEVFSLKAGQRNA---- 338
Query: 401 EENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTYE 517
A S + G + + S + +RLTYE
Sbjct: 339 ------AWSTWVDLDHTGDVKTSGMCRSWVTPRYRLTYE 371
[180][TOP]
>UniRef100_UPI00005CDADA VacB protein n=1 Tax=Xylella fastidiosa 9a5c RepID=UPI00005CDADA
Length = 805
Score = 67.4 bits (163), Expect = 5e-10
Identities = 47/120 (39%), Positives = 63/120 (52%), Gaps = 2/120 (1%)
Frame = +2
Query: 23 HFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSWE 202
H P FS E+ +AA +A PL E G R DLR L +D + DDA+ E
Sbjct: 318 HQLPHVFSQEVLDAA----AAVPLTVESGMVGGRVDLRALPLVTIDGEDAKDFDDAVYCE 373
Query: 203 ADTG--RLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLDAS 376
++ RL V IADVS +++PG PL EAL R+ ++Y P + MLP L+ SL S
Sbjct: 374 SNRWGFRLVVAIADVSHYVRPGTPLDEEALTRATSVYFPGFVVPMLPETLSNGICSLKPS 433
[181][TOP]
>UniRef100_Q9PBZ8 VacB protein n=1 Tax=Xylella fastidiosa RepID=Q9PBZ8_XYLFA
Length = 717
Score = 67.4 bits (163), Expect = 5e-10
Identities = 47/120 (39%), Positives = 63/120 (52%), Gaps = 2/120 (1%)
Frame = +2
Query: 23 HFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSWE 202
H P FS E+ +AA +A PL E G R DLR L +D + DDA+ E
Sbjct: 230 HQLPHVFSQEVLDAA----AAVPLTVESGMVGGRVDLRALPLVTIDGEDAKDFDDAVYCE 285
Query: 203 ADTG--RLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLDAS 376
++ RL V IADVS +++PG PL EAL R+ ++Y P + MLP L+ SL S
Sbjct: 286 SNRWGFRLVVAIADVSHYVRPGTPLDEEALTRATSVYFPGFVVPMLPETLSNGICSLKPS 345
[182][TOP]
>UniRef100_B4U994 Ribonuclease R n=1 Tax=Hydrogenobaculum sp. Y04AAS1
RepID=B4U994_HYDS0
Length = 694
Score = 67.4 bits (163), Expect = 5e-10
Identities = 49/134 (36%), Positives = 67/134 (50%), Gaps = 2/134 (1%)
Frame = +2
Query: 122 RTDLRHLDSYAVDSASTFEVDDA--MSWEADTGRLWVHIADVSAWLKPGEPLTTEALRRS 295
R DLR + +D + DDA + E D RL+VHIADVS ++K G L EA R
Sbjct: 240 RKDLRDQPCFTIDPIRAKDFDDAVYLEKEGDDYRLFVHIADVSLFVKFGSALDKEAYERG 299
Query: 296 CTLYLPTETITMLPLELARDGLSLDASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQV 475
T+YLP E I MLP EL+ + SL V E+ L++ F + L ++
Sbjct: 300 TTIYLPGEAIHMLPEELSSNLCSL--------VPNEDRFCLSVEMVFD--KSAKLKHYEI 349
Query: 476 MPSLIRRPWRLTYE 517
S+I RLTY+
Sbjct: 350 YESVINSKARLTYD 363
[183][TOP]
>UniRef100_Q9RED8 VacB protein n=1 Tax=Burkholderia sp. RepID=Q9RED8_BURSP
Length = 822
Score = 67.4 bits (163), Expect = 5e-10
Identities = 59/167 (35%), Positives = 77/167 (46%), Gaps = 6/167 (3%)
Frame = +2
Query: 32 PPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSWEADT 211
P FS E + A L A A G R DLRHL +D + DDA+ EA
Sbjct: 319 PHQFSEEARAQAAQLPDAPAEADCRG----RVDLRHLPWLTIDGEDARDFDDAVYGEAVK 374
Query: 212 ------GRLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLDA 373
RL V IADVS ++KPG+ L T AL RS ++Y P I MLP EL
Sbjct: 375 LGRKRGFRLRVAIADVSYYVKPGDALDTAALERSTSVYFPRRVIPMLPPEL--------- 425
Query: 374 SNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTY 514
SNG ++ E + AL + G++ Q P++I RL+Y
Sbjct: 426 SNGLCSLNPEVDR-CALVCDLVIDAQGAVHTCQCYPAMIHSVARLSY 471
[184][TOP]
>UniRef100_C9Q5P1 Ribonuclease R n=1 Tax=Vibrio sp. RC341 RepID=C9Q5P1_9VIBR
Length = 821
Score = 67.4 bits (163), Expect = 5e-10
Identities = 51/168 (30%), Positives = 81/168 (48%), Gaps = 3/168 (1%)
Frame = +2
Query: 20 SHFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSW 199
+H P + E+++ GL P ++ G R DLR L +D + DDA+
Sbjct: 237 THQIPHEWPAEVEQQVAGLGEEVPEEAKQG----RVDLRALPLVTIDGEDARDFDDAVYC 292
Query: 200 EADTG---RLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLD 370
EA G RLWV IADVS +++P L EA+ R ++Y P++ + MLP L
Sbjct: 293 EAKKGGGWRLWVAIADVSYYVRPDTALDKEAINRGNSVYFPSQVVPMLPEVL-------- 344
Query: 371 ASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTY 514
SNG ++ + + L + T++E G L + +++ RLTY
Sbjct: 345 -SNGLCSLNPQVDR-LCMVCEMTISETGKLSGYKHYEAVMNSHARLTY 390
[185][TOP]
>UniRef100_C3KZ51 Ribonuclease R n=2 Tax=Clostridium botulinum RepID=C3KZ51_CLOB6
Length = 725
Score = 67.4 bits (163), Expect = 5e-10
Identities = 54/164 (32%), Positives = 81/164 (49%), Gaps = 3/164 (1%)
Frame = +2
Query: 32 PPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSWEA-- 205
P F P++Q A+ + A P R DLR L +D ++DDA+S E
Sbjct: 218 PEEFPPKVQSYADNISEAIPEEEYKR----REDLRDLTIVTIDGEDAKDLDDAISLEKLP 273
Query: 206 -DTGRLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLDASNG 382
L VHIADVS ++K PL EAL+R+ ++YL I MLP +L SNG
Sbjct: 274 NGNYYLGVHIADVSHYVKEKNPLDKEALKRATSVYLIDRVIPMLPKKL---------SNG 324
Query: 383 HAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTY 514
++ + + L LS + + G + D +V+ S+I+ R+TY
Sbjct: 325 ICSLNPKIDR-LTLSCFMEIDKSGKVVDHRVVESIIKSTERMTY 367
[186][TOP]
>UniRef100_A8SP48 Putative uncharacterized protein n=1 Tax=Coprococcus eutactus ATCC
27759 RepID=A8SP48_9FIRM
Length = 727
Score = 67.4 bits (163), Expect = 5e-10
Identities = 51/163 (31%), Positives = 82/163 (50%), Gaps = 2/163 (1%)
Frame = +2
Query: 32 PPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSWEADT 211
P F E+ ++ L+ P + A RTDLRHL + +D ++DDA++
Sbjct: 225 PVDFPDEVMDS----LAQIPDSVSTSEMAGRTDLRHLQTVTIDGEDAKDLDDAITLYEKD 280
Query: 212 G--RLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLDASNGH 385
G +L VHIADV+ ++K PL EAL R + YL I MLP +L SNG
Sbjct: 281 GMYKLGVHIADVTHYVKENSPLDKEALNRGTSCYLVDRVIPMLPHKL---------SNGI 331
Query: 386 AHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTY 514
++E ++ LALS + ++G + ++ ++I R++Y
Sbjct: 332 CSLNEGQDR-LALSCLMDIDKNGHIVGHKICETVINVDRRMSY 373
[187][TOP]
>UniRef100_C3QS19 Ribonuclease R n=2 Tax=Bacteroides RepID=C3QS19_9BACE
Length = 718
Score = 67.4 bits (163), Expect = 5e-10
Identities = 54/169 (31%), Positives = 81/169 (47%), Gaps = 3/169 (1%)
Frame = +2
Query: 20 SHFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSW 199
+ F P P+ E A + A A E+ A R D R + ++ +D + DDA+S
Sbjct: 231 AEFGLPYVYPKAVETAADKIPAEISAEEI---AKREDFRKVTTFTIDPKDAKDFDDALSI 287
Query: 200 EADTGRLW---VHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLD 370
LW VHIADV+ ++K G + EA +R+ ++YL TI MLP L SL
Sbjct: 288 RKLKDGLWEVGVHIADVTHYVKEGSIIDKEAEKRATSVYLVDRTIPMLPERLCNFICSL- 346
Query: 371 ASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTYE 517
+EE+ LA S F + E G + D +++ ++I R TYE
Sbjct: 347 ------RPNEEK---LAFSVIFDITEKGEVRDSRIVHTVINSDRRFTYE 386
[188][TOP]
>UniRef100_A6DIQ3 Exoribonuclease, VacB/RNB family protein n=1 Tax=Lentisphaera
araneosa HTCC2155 RepID=A6DIQ3_9BACT
Length = 668
Score = 67.4 bits (163), Expect = 5e-10
Identities = 44/125 (35%), Positives = 65/125 (52%), Gaps = 3/125 (2%)
Frame = +2
Query: 149 YAVDSASTFEVDDAMS---WEADTGRLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTE 319
+++D ST +VDD +S E D ++ +HIADVSA++ L EA R+ ++YLPT
Sbjct: 275 FSIDDESTSDVDDVLSVEYLENDLFKIGIHIADVSAYIAKASTLDLEAEHRATSIYLPTG 334
Query: 320 TITMLPLELARDGLSLDASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRP 499
T+ M P ELA SL + ALS+ T+ DG L + SLI+
Sbjct: 335 TVNMFPAELATHKASLLPGSPKP----------ALSYYATLTSDGELRSTHIERSLIQVS 384
Query: 500 WRLTY 514
+L+Y
Sbjct: 385 EKLSY 389
[189][TOP]
>UniRef100_B7FT32 Predicted protein n=1 Tax=Phaeodactylum tricornutum CCAP 1055/1
RepID=B7FT32_PHATR
Length = 813
Score = 67.4 bits (163), Expect = 5e-10
Identities = 48/140 (34%), Positives = 64/140 (45%), Gaps = 9/140 (6%)
Frame = +2
Query: 122 RTDLRHLDSYAVDSASTFEVDDAMSWE-------ADTGRLWVHIADVSAWLKPGEPLTTE 280
R DLR L Y +D ST E+DD +S E + +W+HIAD W L
Sbjct: 305 RRDLRDLKVYTIDGESTTEIDDGLSIEIIRQPDGTERQAIWIHIADADRWAPRNSTLFHA 364
Query: 281 ALRRSCTLYLPTETITMLPLELARDGLSLDASNGHAHVSEEENAVLALSFGFTVAEDGSL 460
A R +LYLP + M P +++ + +SL A ALS + EDGS+
Sbjct: 365 ARTRYTSLYLPRGSCPMFPPQVSDNVMSLIAGQD----------ACALSLRVMLNEDGSI 414
Query: 461 GDPQ--VMPSLIRRPWRLTY 514
V PSLI +RLTY
Sbjct: 415 DASTLIVTPSLIHVDYRLTY 434
[190][TOP]
>UniRef100_UPI0001B4AF33 putative exoribonuclease n=1 Tax=Bacteroides fragilis 3_1_12
RepID=UPI0001B4AF33
Length = 714
Score = 67.0 bits (162), Expect = 7e-10
Identities = 54/169 (31%), Positives = 81/169 (47%), Gaps = 3/169 (1%)
Frame = +2
Query: 20 SHFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSW 199
+ F P P+ E A + A A E+ A R D R + ++ +D + DDA+S
Sbjct: 228 AEFGLPYVYPQSVEKAADKIPAEISAEEI---ARREDFRKVTTFTIDPKDAKDFDDALSI 284
Query: 200 EADTGRLW---VHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLD 370
LW VHIADV+ ++K G + EA +R+ ++YL TI MLP L SL
Sbjct: 285 RPLKNGLWEVGVHIADVTHYVKEGSIIDKEAEKRATSVYLVDRTIPMLPERLCNFICSL- 343
Query: 371 ASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTYE 517
+EE+ LA S F + E G + D +++ ++I R TYE
Sbjct: 344 ------RPNEEK---LAFSAIFDITEKGEVRDSRIVHTVIESDRRFTYE 383
[191][TOP]
>UniRef100_Q1J171 Ribonuclease R n=1 Tax=Deinococcus geothermalis DSM 11300
RepID=Q1J171_DEIGD
Length = 1182
Score = 67.0 bits (162), Expect = 7e-10
Identities = 53/162 (32%), Positives = 80/162 (49%), Gaps = 3/162 (1%)
Frame = +2
Query: 41 FSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSWEAD---T 211
F ++ E AN + + P S VG R DLR + + VD + DDA+ + T
Sbjct: 487 FPADVLEEANAIPTRIPPESLVG----RLDLREFNIFTVDGRDAKDFDDAIHIQPTPEGT 542
Query: 212 GRLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLDASNGHAH 391
+ VHIADVS +++ G PL EA R+ ++YLP + MLP L+ SL
Sbjct: 543 FVVGVHIADVSHYVREGTPLDQEAYARATSVYLPGRVLPMLPEHLSNGVCSLVP------ 596
Query: 392 VSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTYE 517
E+ V AL ++ +G + D ++ PS+I RLTY+
Sbjct: 597 -FEDRLTVTAL---IELSAEGDILDVKLAPSVINSKARLTYD 634
[192][TOP]
>UniRef100_Q0IAH9 Exoribonuclease, VacB/RNB family protein n=1 Tax=Synechococcus sp.
CC9311 RepID=Q0IAH9_SYNS3
Length = 645
Score = 67.0 bits (162), Expect = 7e-10
Identities = 51/162 (31%), Positives = 73/162 (45%), Gaps = 3/162 (1%)
Frame = +2
Query: 41 FSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSWEA---DT 211
FSP L E A L+ ASE + R DL H +D T ++DD ++ E +
Sbjct: 222 FSPALLEEAERLVELN--ASECPGDSERIDLCHQRCVTIDDEDTRDIDDGIALERREDGS 279
Query: 212 GRLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLDASNGHAH 391
RLW+HIAD ++ L EA RR +LYL + M P L+ SL A A
Sbjct: 280 QRLWIHIADPGRLIESDSALDLEARRRGSSLYLAKGNLPMFPESLSTGPFSLRARTRTA- 338
Query: 392 VSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTYE 517
A S + +G LGD + S ++ +RL+Y+
Sbjct: 339 ---------AWSIWAELTSEGELGDHGIHRSWVQPTYRLSYD 371
[193][TOP]
>UniRef100_Q04E22 Exoribonuclease R n=1 Tax=Oenococcus oeni PSU-1 RepID=Q04E22_OENOB
Length = 726
Score = 67.0 bits (162), Expect = 7e-10
Identities = 46/135 (34%), Positives = 70/135 (51%), Gaps = 3/135 (2%)
Frame = +2
Query: 122 RTDLRHLDSYAVDSASTFEVDDAMS-WEADTGR--LWVHIADVSAWLKPGEPLTTEALRR 292
R D R +D A T ++DDA+ W+ G L VHIADVS ++ L EA +R
Sbjct: 207 RPDFRDQPLITIDGADTKDIDDAVVVWKLPNGNYHLGVHIADVSNYVPLKTSLDAEAYKR 266
Query: 293 SCTLYLPTETITMLPLELARDGLSLDASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQ 472
++YL I MLP E+ SNG A ++ E+ LA+S + ++G + +
Sbjct: 267 GTSVYLTDRVIPMLPTEI---------SNGIASLNPNEDR-LAMSCEMEINQEGQVVKHK 316
Query: 473 VMPSLIRRPWRLTYE 517
+ PS+IR R+TY+
Sbjct: 317 IQPSIIRSHARMTYD 331
[194][TOP]
>UniRef100_A4SIZ0 Ribonuclease R n=1 Tax=Aeromonas salmonicida subsp. salmonicida
A449 RepID=A4SIZ0_AERS4
Length = 797
Score = 67.0 bits (162), Expect = 7e-10
Identities = 45/117 (38%), Positives = 62/117 (52%), Gaps = 3/117 (2%)
Frame = +2
Query: 20 SHFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSW 199
+H P T+ E+ + GL P ++ G R DLR L +D + DDA+
Sbjct: 231 THGIPHTWPEEVTKEVAGLGEQVPEKAKEG----RIDLRALPLVTIDGEDARDFDDAVFC 286
Query: 200 EADTG---RLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGL 361
EA G RLWV IADVSA++KPG L EA +R ++Y P + MLP E+ +GL
Sbjct: 287 EAKRGGGWRLWVAIADVSAYVKPGTALDAEAYQRGNSVYFPEFVVPMLP-EVLSNGL 342
[195][TOP]
>UniRef100_C3QA61 Ribonuclease R n=1 Tax=Bacteroides sp. D1 RepID=C3QA61_9BACE
Length = 718
Score = 67.0 bits (162), Expect = 7e-10
Identities = 54/169 (31%), Positives = 81/169 (47%), Gaps = 3/169 (1%)
Frame = +2
Query: 20 SHFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSW 199
+ F P P+ E A + A A E+ A R D R + ++ +D + DDA+S
Sbjct: 231 AEFGLPYVYPKAVETAADKIPAEISAEEI---AKREDFRKVTTFTIDPKDAKDFDDALSI 287
Query: 200 EADTGRLW---VHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLD 370
LW VHIADV+ ++K G + EA +R+ ++YL TI MLP L SL
Sbjct: 288 RKLKDGLWEVGVHIADVTHYVKEGGIIDKEAEKRATSVYLVDRTIPMLPERLCNFICSL- 346
Query: 371 ASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTYE 517
+EE+ LA S F + E G + D +++ ++I R TYE
Sbjct: 347 ------RPNEEK---LAFSVIFDITEKGEIKDSRIVHTVINSDRRFTYE 386
[196][TOP]
>UniRef100_B9CW31 Ribonuclease R n=1 Tax=Actinobacillus minor 202 RepID=B9CW31_9PAST
Length = 779
Score = 67.0 bits (162), Expect = 7e-10
Identities = 55/167 (32%), Positives = 78/167 (46%), Gaps = 2/167 (1%)
Frame = +2
Query: 20 SHFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAM-- 193
+H P T+S +++ L P ++ G R DLR L +D S + DDA+
Sbjct: 229 NHDIPHTWSEGVEKQIRQLSEEVPEEAKQG----RVDLRDLPLVTIDGESARDFDDAVFA 284
Query: 194 SWEADTGRLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLDA 373
E D RLWV IADVS +++P L EA R ++Y PT I MLP L
Sbjct: 285 QKEGDGWRLWVAIADVSYYVRPKTALDLEAANRGNSVYFPTRVIPMLPEIL--------- 335
Query: 374 SNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTY 514
SNG ++ + + L L TV+ G L Q +++ RLTY
Sbjct: 336 SNGLCSLNPQVDR-LCLVAEMTVSAQGELTGYQFYEAVMNSHARLTY 381
[197][TOP]
>UniRef100_B0MMH0 Putative uncharacterized protein n=1 Tax=Eubacterium siraeum DSM
15702 RepID=B0MMH0_9FIRM
Length = 713
Score = 67.0 bits (162), Expect = 7e-10
Identities = 43/115 (37%), Positives = 62/115 (53%), Gaps = 2/115 (1%)
Frame = +2
Query: 32 PPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSWEADT 211
P FS E A ++A + +A R DLR L + +D A T ++DDA+S E
Sbjct: 215 PVDFSEEALNQAKQYVNA---VIDEKQTAKRLDLRDLPIFTIDGADTKDIDDAISIERTE 271
Query: 212 G--RLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLD 370
G +L VHIADVS ++ G PL +A R ++Y+ + I MLP EL+ SL+
Sbjct: 272 GGYKLGVHIADVSHYVTEGSPLDNDAFERGTSVYIADKVIPMLPKELSNGICSLN 326
[198][TOP]
>UniRef100_A0NJR2 Ribonuclease R n=1 Tax=Oenococcus oeni ATCC BAA-1163
RepID=A0NJR2_OENOE
Length = 726
Score = 67.0 bits (162), Expect = 7e-10
Identities = 46/135 (34%), Positives = 70/135 (51%), Gaps = 3/135 (2%)
Frame = +2
Query: 122 RTDLRHLDSYAVDSASTFEVDDAMS-WEADTGR--LWVHIADVSAWLKPGEPLTTEALRR 292
R D R +D A T ++DDA+ W+ G L VHIADVS ++ L EA +R
Sbjct: 207 RPDFRDQPLITIDGADTKDIDDAVVVWKLPNGNYHLGVHIADVSNYVPLKTSLDAEAYKR 266
Query: 293 SCTLYLPTETITMLPLELARDGLSLDASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQ 472
++YL I MLP E+ SNG A ++ E+ LA+S + ++G + +
Sbjct: 267 GTSVYLTDRVIPMLPTEI---------SNGIASLNPNEDR-LAMSCEMEINQEGQVVKHK 316
Query: 473 VMPSLIRRPWRLTYE 517
+ PS+IR R+TY+
Sbjct: 317 IQPSIIRSHARMTYD 331
[199][TOP]
>UniRef100_C1V752 Exoribonuclease R n=1 Tax=Halogeometricum borinquense DSM 11551
RepID=C1V752_9EURY
Length = 440
Score = 67.0 bits (162), Expect = 7e-10
Identities = 50/134 (37%), Positives = 66/134 (49%), Gaps = 3/134 (2%)
Frame = +2
Query: 122 RTDLRHLDSYAVDSASTFEVDDAMSW--EADTGRLWVHIADVSAWLKPGEPLTTEALRRS 295
R DLR L ++ D + DDA+S +T LWVHIADV+ ++ PG + EA++R
Sbjct: 71 RQDLRDLTTWTTDPIDAQDFDDAISIAENEETYTLWVHIADVTHYVHPGSEMWEEAVKRG 130
Query: 296 CTLYLPTETITMLPLELARDGLSLDASNGH-AHVSEEENAVLALSFGFTVAEDGSLGDPQ 472
T+YLP TI MLP LA SL + AH E E LSF +
Sbjct: 131 NTVYLPAYTIHMLPPILAETVCSLVPNEDRLAHTVEMEIDKETLSF----------EEID 180
Query: 473 VMPSLIRRPWRLTY 514
+ S+I RLTY
Sbjct: 181 IYKSVIESDERLTY 194
[200][TOP]
>UniRef100_B4F273 Ribonuclease R n=1 Tax=Proteus mirabilis HI4320 RepID=B4F273_PROMH
Length = 829
Score = 66.6 bits (161), Expect = 9e-10
Identities = 50/168 (29%), Positives = 82/168 (48%), Gaps = 3/168 (1%)
Frame = +2
Query: 20 SHFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSW 199
+H P T+ P++++ L P +++ G R DLR L +D + DDA+
Sbjct: 230 THEIPHTWPPKVEKEIADLKEDVPESAKQG----RVDLRDLPLITIDGEDARDFDDAVYC 285
Query: 200 EADTG---RLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLD 370
+ G RLWV IADVS +++P L TEA R ++Y P++ + MLP L
Sbjct: 286 QRKKGGGWRLWVAIADVSYYVRPQTALDTEARSRGNSVYFPSQVVPMLPEVL-------- 337
Query: 371 ASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTY 514
SNG ++ + + L + TV+E G L + +++ R+TY
Sbjct: 338 -SNGLCSLNPQVDR-LCMVCEMTVSEQGRLSSYKFYEAVMSSHARMTY 383
[201][TOP]
>UniRef100_C9L2E1 Ribonuclease R n=1 Tax=Bacteroides finegoldii DSM 17565
RepID=C9L2E1_9BACE
Length = 718
Score = 66.6 bits (161), Expect = 9e-10
Identities = 49/151 (32%), Positives = 76/151 (50%), Gaps = 5/151 (3%)
Frame = +2
Query: 80 SAGPLASEVGPS--ACRTDLRHLDSYAVDSASTFEVDDAMSWEADTGRLW---VHIADVS 244
+A + +E+ P A R D R + ++ +D + DDA+S + LW VHIADV+
Sbjct: 246 AADKIPAEITPEEIAKREDFRKVTTFTIDPKDAKDFDDALSIRSIKNGLWEVGVHIADVT 305
Query: 245 AWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLDASNGHAHVSEEENAVLAL 424
++K G + EA +R+ ++YL TI MLP L SL +EE+ LA
Sbjct: 306 HYVKEGGIIDKEAEKRATSVYLVDRTIPMLPERLCNFICSL-------RPNEEK---LAF 355
Query: 425 SFGFTVAEDGSLGDPQVMPSLIRRPWRLTYE 517
S F + E G + D ++ ++I R TYE
Sbjct: 356 SVIFDITEKGEIKDSRIAHTVINSDRRFTYE 386
[202][TOP]
>UniRef100_C6I389 Ribonuclease R n=3 Tax=Bacteroides RepID=C6I389_9BACE
Length = 714
Score = 66.6 bits (161), Expect = 9e-10
Identities = 54/169 (31%), Positives = 81/169 (47%), Gaps = 3/169 (1%)
Frame = +2
Query: 20 SHFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSW 199
+ F P P+ E A + A A E+ A R D R + ++ +D + DDA+S
Sbjct: 228 AEFGLPYVYPQSVEKAADKIPAEISAEEI---ARREDFRKVTTFTIDPKDAKDFDDALSI 284
Query: 200 EADTGRLW---VHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLD 370
LW VHIADV+ ++K G + EA +R+ ++YL TI MLP L SL
Sbjct: 285 RPLKDGLWEVGVHIADVTHYVKEGSIIDKEAEKRATSVYLVDRTIPMLPERLCNFICSL- 343
Query: 371 ASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTYE 517
+EE+ LA S F + E G + D +++ ++I R TYE
Sbjct: 344 ------RPNEEK---LAFSAIFDITEKGEVRDSRIVHTVIESDRRFTYE 383
[203][TOP]
>UniRef100_C4V602 Ribonuclease R n=1 Tax=Selenomonas flueggei ATCC 43531
RepID=C4V602_9FIRM
Length = 898
Score = 66.6 bits (161), Expect = 9e-10
Identities = 54/160 (33%), Positives = 81/160 (50%), Gaps = 2/160 (1%)
Frame = +2
Query: 41 FSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAM-SWEAD-TG 214
F P++ EAA PL E A R D R +D T ++DD + ++E D
Sbjct: 231 FPPDVAEAA-ARCPKDPLPEEY---AGRRDRRDFPIVTIDGEDTKDIDDGVYAYEKDGVF 286
Query: 215 RLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLDASNGHAHV 394
L V+IADVS +++ GEPL EA RR ++YL I MLP EL SNG +
Sbjct: 287 FLGVYIADVSHYVRAGEPLDREAARRGTSVYLVDRVIPMLPKEL---------SNGICSL 337
Query: 395 SEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTY 514
+E + L+++ + DG + + +++P +I RLTY
Sbjct: 338 NEGVDR-LSMACEMEIGMDGEVRNYEIVPCVIHVARRLTY 376
[204][TOP]
>UniRef100_C3J9M7 Ribonuclease R n=2 Tax=Bacteria RepID=C3J9M7_9PORP
Length = 736
Score = 66.6 bits (161), Expect = 9e-10
Identities = 54/170 (31%), Positives = 76/170 (44%), Gaps = 3/170 (1%)
Frame = +2
Query: 17 ASHFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMS 196
A + P ++ E +EAA + S P A R D R + + +D A + DDA+S
Sbjct: 248 AEYDLPYSYPEEAEEAARQIPSEIPSEE----MAKREDFREVFTLTIDPADAKDFDDALS 303
Query: 197 WEADTGRL---WVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSL 367
W G L VHIADVS ++ PG + EA R+ ++YL TI MLP L D SL
Sbjct: 304 WRKLEGGLVEVGVHIADVSYYVTPGSVIDKEAYDRATSIYLVDRTIPMLPERLCNDLCSL 363
Query: 368 DASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTYE 517
A LA S F + E + ++ ++I R YE
Sbjct: 364 ----------RPNEARLAFSCVFVLNEAAEVQSYRIGRTIIESNRRYAYE 403
[205][TOP]
>UniRef100_C2LKJ2 Exoribonuclease R n=1 Tax=Proteus mirabilis ATCC 29906
RepID=C2LKJ2_PROMI
Length = 829
Score = 66.6 bits (161), Expect = 9e-10
Identities = 50/168 (29%), Positives = 82/168 (48%), Gaps = 3/168 (1%)
Frame = +2
Query: 20 SHFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSW 199
+H P T+ P++++ L P +++ G R DLR L +D + DDA+
Sbjct: 230 THEIPHTWPPKVEKEIADLKEDVPESAKQG----RVDLRDLPLITIDGEDARDFDDAVYC 285
Query: 200 EADTG---RLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLD 370
+ G RLWV IADVS +++P L TEA R ++Y P++ + MLP L
Sbjct: 286 QRKKGGGWRLWVAIADVSYYVRPQTALDTEARSRGNSVYFPSQVVPMLPEVL-------- 337
Query: 371 ASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTY 514
SNG ++ + + L + TV+E G L + +++ R+TY
Sbjct: 338 -SNGLCSLNPQVDR-LCMVCEMTVSEQGRLSSYKFYEAVMSSHARMTY 383
[206][TOP]
>UniRef100_C1I4F4 Ribonuclease R n=1 Tax=Clostridium sp. 7_2_43FAA RepID=C1I4F4_9CLOT
Length = 745
Score = 66.6 bits (161), Expect = 9e-10
Identities = 49/136 (36%), Positives = 75/136 (55%), Gaps = 3/136 (2%)
Frame = +2
Query: 116 ACRTDLRHLDSYAVDSASTFEVDDAMSWEA-DTG--RLWVHIADVSAWLKPGEPLTTEAL 286
A R DLR+L +D ++DDA+S E D G RL VHIADVS +++ PL EAL
Sbjct: 243 ARRKDLRNLRMVTIDGEDAKDLDDAVSIERLDNGKFRLGVHIADVSHYVREKNPLDKEAL 302
Query: 287 RRSCTLYLPTETITMLPLELARDGLSLDASNGHAHVSEEENAVLALSFGFTVAEDGSLGD 466
+R+ ++YL I MLP +L SNG ++ + + LALS + ++G +
Sbjct: 303 KRATSVYLIDRVIPMLPKKL---------SNGICSLNPKVDR-LALSCFMVIDKNGKVIQ 352
Query: 467 PQVMPSLIRRPWRLTY 514
++ S+I+ R+TY
Sbjct: 353 HEIEESVIKTSERMTY 368
[207][TOP]
>UniRef100_A3EPY9 Ribonuclease R n=1 Tax=Leptospirillum rubarum RepID=A3EPY9_9BACT
Length = 744
Score = 66.6 bits (161), Expect = 9e-10
Identities = 45/140 (32%), Positives = 67/140 (47%), Gaps = 3/140 (2%)
Frame = +2
Query: 104 VGPSACRTDLRHLDSYAVDSASTFEVDDAMSWEAD---TGRLWVHIADVSAWLKPGEPLT 274
V PS R DLRHL+ +D + DDA+S + T ++ +HIADV A++ PG L
Sbjct: 247 VEPSENRVDLRHLEIMTIDGDRARDFDDALSVVENPDGTFQIGIHIADVGAYVLPGSELD 306
Query: 275 TEALRRSCTLYLPTETITMLPLELARDGLSLDASNGHAHVSEEENAVLALSFGFTVAEDG 454
EA RR ++Y P + M P L+ LSL+ LA + ++ G
Sbjct: 307 KEAFRRGTSVYFPDRVVPMFPEVLSNGVLSLNPDEDR----------LARTVMVRMSPAG 356
Query: 455 SLGDPQVMPSLIRRPWRLTY 514
+ + + S+IR R TY
Sbjct: 357 QVLESSIFRSVIRSRLRATY 376
[208][TOP]
>UniRef100_UPI0001826C89 hypothetical protein ENTCAN_00853 n=1 Tax=Enterobacter cancerogenus
ATCC 35316 RepID=UPI0001826C89
Length = 827
Score = 66.2 bits (160), Expect = 1e-09
Identities = 51/168 (30%), Positives = 78/168 (46%), Gaps = 3/168 (1%)
Frame = +2
Query: 20 SHFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSW 199
+H P + ++E L P S+VG R DLR L +D + DDA+
Sbjct: 244 THEIPYVWPKAVEEQIENLREEVPEESKVG----RVDLRALPLVTIDGEDARDFDDAVYC 299
Query: 200 EADTG---RLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLD 370
E G RLWV IADVS +++P PL EA R ++Y P++ + MLP L
Sbjct: 300 EKKRGGGWRLWVAIADVSYYVRPNTPLDNEARSRGTSVYFPSQVVPMLPEVL-------- 351
Query: 371 ASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTY 514
SNG ++ + + L + T++ G L + +++ RLTY
Sbjct: 352 -SNGLCSLNPQVDR-LCMVCEMTISTKGRLTGYKFYEAVMSSHARLTY 397
[209][TOP]
>UniRef100_Q7VN79 Ribonuclease r, virulence associated protein VacB-like protein n=1
Tax=Haemophilus ducreyi RepID=Q7VN79_HAEDU
Length = 785
Score = 66.2 bits (160), Expect = 1e-09
Identities = 48/133 (36%), Positives = 65/133 (48%), Gaps = 2/133 (1%)
Frame = +2
Query: 122 RTDLRHLDSYAVDSASTFEVDDAM--SWEADTGRLWVHIADVSAWLKPGEPLTTEALRRS 295
R DLRHL +D S + DDA+ E D RLWV IADVS +++P L EA +R
Sbjct: 260 RIDLRHLPLVTIDGESACDFDDAVFARKEGDQWRLWVAIADVSYYVRPKTALDLEAAKRG 319
Query: 296 CTLYLPTETITMLPLELARDGLSLDASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQV 475
++Y P I MLP L SNG ++ + + L L TV + G L Q
Sbjct: 320 NSVYFPKRVIPMLPEVL---------SNGLCSLNPQVDR-LCLVAEMTVCQSGELTRYQF 369
Query: 476 MPSLIRRPWRLTY 514
+++ RLTY
Sbjct: 370 YEAVMNSHARLTY 382
[210][TOP]
>UniRef100_Q7VBX3 Exoribonuclease R/ribonuclease II n=1 Tax=Prochlorococcus marinus
RepID=Q7VBX3_PROMA
Length = 432
Score = 66.2 bits (160), Expect = 1e-09
Identities = 42/132 (31%), Positives = 70/132 (53%), Gaps = 2/132 (1%)
Frame = +2
Query: 128 DLRHLDSYAVDSASTFEVDDAMSWE--ADTGRLWVHIADVSAWLKPGEPLTTEALRRSCT 301
D+ +L +Y +D +T E+DDA+S E D LW+HIA+ + + L EA+ RS T
Sbjct: 34 DITNLKTYTIDDPNTIEIDDAISLEKRGDKCFLWIHIANPAETISLNSALAQEAMIRSST 93
Query: 302 LYLPTETITMLPLELARDGLSLDASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMP 481
+YL M P EL R+ +SL V +E+ LA+S +++ G + +
Sbjct: 94 IYLAESISYMFPKELIREKISL--------VQGKES--LAISLKLELSDKGDINSFSIER 143
Query: 482 SLIRRPWRLTYE 517
+ I+ ++L+YE
Sbjct: 144 TKIKPDYKLSYE 155
[211][TOP]
>UniRef100_Q30Y52 Ribonuclease R n=1 Tax=Desulfovibrio desulfuricans subsp.
desulfuricans str. G20 RepID=Q30Y52_DESDG
Length = 869
Score = 66.2 bits (160), Expect = 1e-09
Identities = 54/170 (31%), Positives = 78/170 (45%), Gaps = 2/170 (1%)
Frame = +2
Query: 11 LRASHFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDA 190
++ +H P F E+ + A L P A R DLRH+D +D A + DDA
Sbjct: 224 VKLNHNVPTEFPQEVLDQAAAL----PDQPSEDDFAGRVDLRHVDFVTIDGAKARDFDDA 279
Query: 191 MSWEA--DTGRLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLS 364
+ E D RLWV IADVS +++P L EAL R+ + Y P M P L
Sbjct: 280 VYVEEQHDGWRLWVAIADVSHYVQPRTALDEEALTRANSYYFPQSVEPMFPEAL------ 333
Query: 365 LDASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTY 514
SNG ++ + ++ + A DG+ G + P++I RLTY
Sbjct: 334 ---SNGLCSLNPRVPRLAMVAEVYFYA-DGTPGKSRFYPAVIESKARLTY 379
[212][TOP]
>UniRef100_B7UQI8 Exoribonuclease R, RNase R n=1 Tax=Escherichia coli O127:H6 str.
E2348/69 RepID=B7UQI8_ECO27
Length = 813
Score = 66.2 bits (160), Expect = 1e-09
Identities = 52/168 (30%), Positives = 79/168 (47%), Gaps = 3/168 (1%)
Frame = +2
Query: 20 SHFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSW 199
+H P + +++ GL P ++VG R DLR L +D + DDA+
Sbjct: 230 THEIPYIWPQAVEQQVAGLKEEVPEEAKVG----RVDLRDLPLVTIDGEDARDFDDAVYC 285
Query: 200 EADTG---RLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLD 370
E G RLWV IADVS +++P PL EA R ++Y P++ I MLP L
Sbjct: 286 EKKRGGGWRLWVAIADVSYYVRPPTPLDREARNRGTSVYFPSQVIPMLPEVL-------- 337
Query: 371 ASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTY 514
SNG ++ + + L + TV+ G L + +++ RLTY
Sbjct: 338 -SNGLCSLNPQVDR-LCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTY 383
[213][TOP]
>UniRef100_A9KPF2 Ribonuclease R n=1 Tax=Clostridium phytofermentans ISDg
RepID=A9KPF2_CLOPH
Length = 716
Score = 66.2 bits (160), Expect = 1e-09
Identities = 45/133 (33%), Positives = 70/133 (52%), Gaps = 2/133 (1%)
Frame = +2
Query: 122 RTDLRHLDSYAVDSASTFEVDDA--MSWEADTGRLWVHIADVSAWLKPGEPLTTEALRRS 295
R DLR+L + +D ++DDA +S + D +L VHIADVS ++ PL EAL+R
Sbjct: 250 RVDLRNLQTVTIDGEDAKDLDDAITLSKKGDIYQLGVHIADVSNYVTEDSPLDKEALKRG 309
Query: 296 CTLYLPTETITMLPLELARDGLSLDASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQV 475
++YL I MLP +L+ SL+A + LALS + E G++ ++
Sbjct: 310 TSVYLVDRVIPMLPHKLSNGICSLNAGSDR----------LALSCMMEIDEKGNVVGHRI 359
Query: 476 MPSLIRRPWRLTY 514
++I R+TY
Sbjct: 360 AETVINVDRRMTY 372
[214][TOP]
>UniRef100_A5EVE2 Ribonuclease R n=1 Tax=Dichelobacter nodosus VCS1703A
RepID=A5EVE2_DICNV
Length = 752
Score = 66.2 bits (160), Expect = 1e-09
Identities = 49/155 (31%), Positives = 73/155 (47%), Gaps = 2/155 (1%)
Frame = +2
Query: 59 EAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSWE--ADTGRLWVHI 232
+A + P A + R DLR+L +D S + DDA+ E + RL+V I
Sbjct: 248 DAVRAQIEKMPDALQEADYVDRLDLRYLPMVTIDGISARDFDDALYAEKRGENYRLFVAI 307
Query: 233 ADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLDASNGHAHVSEEENA 412
ADVS ++KP PL EA R ++Y P + MLP +L+ SL + HV
Sbjct: 308 ADVSYYVKPDSPLDEEAYARGTSVYFPDRVVPMLPEKLSNGLCSL-----NPHVDR---- 358
Query: 413 VLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTYE 517
L L T+ G + + + ++I+ RLTYE
Sbjct: 359 -LCLVCELTITPSGQIKNSKFHQAVIQSHARLTYE 392
[215][TOP]
>UniRef100_C4URL8 Ribonuclease R n=1 Tax=Yersinia rohdei ATCC 43380
RepID=C4URL8_YERRO
Length = 848
Score = 66.2 bits (160), Expect = 1e-09
Identities = 50/168 (29%), Positives = 80/168 (47%), Gaps = 3/168 (1%)
Frame = +2
Query: 20 SHFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSW 199
+H P T+ P++++ L P ++ G R DLR+L +D + DDA+
Sbjct: 230 THEIPHTWPPQVEKQVADLKEQVPEEAKKG----RVDLRNLPLVTIDGEDARDFDDAVYC 285
Query: 200 EADTG---RLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLD 370
E G RLWV IADVS +++P L EA R ++Y P++ I MLP L
Sbjct: 286 EKKRGGGWRLWVAIADVSYYVRPRTALDDEARSRGTSVYFPSQVIPMLPEVL-------- 337
Query: 371 ASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTY 514
SNG ++ + + L + T++ G L + +++ RLTY
Sbjct: 338 -SNGLCSLNPQVDR-LCMVCEMTISAQGKLSSYKFYEAVMSSHARLTY 383
[216][TOP]
>UniRef100_C4SDK2 Ribonuclease R n=1 Tax=Yersinia mollaretii ATCC 43969
RepID=C4SDK2_YERMO
Length = 878
Score = 66.2 bits (160), Expect = 1e-09
Identities = 50/168 (29%), Positives = 80/168 (47%), Gaps = 3/168 (1%)
Frame = +2
Query: 20 SHFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSW 199
+H P T+ P++++ L P ++ G R DLR+L +D + DDA+
Sbjct: 253 THEIPHTWPPQVEKQVADLKEQVPEEAKKG----RVDLRNLPLVTIDGEDARDFDDAVYC 308
Query: 200 EADTG---RLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLD 370
E G RLWV IADVS +++P L EA R ++Y P++ I MLP L
Sbjct: 309 EKKRGGGWRLWVAIADVSYYVRPRTALDDEARSRGNSVYFPSQVIPMLPEVL-------- 360
Query: 371 ASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTY 514
SNG ++ + + L + T++ G L + +++ RLTY
Sbjct: 361 -SNGLCSLNPQVDR-LCMVCEMTISAQGKLSSSKFYEAVMSSHARLTY 406
[217][TOP]
>UniRef100_B7MSJ7 Exoribonuclease R, RNase R n=3 Tax=Escherichia coli
RepID=B7MSJ7_ECO81
Length = 813
Score = 66.2 bits (160), Expect = 1e-09
Identities = 52/168 (30%), Positives = 79/168 (47%), Gaps = 3/168 (1%)
Frame = +2
Query: 20 SHFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSW 199
+H P + +++ GL P ++VG R DLR L +D + DDA+
Sbjct: 230 THEIPYIWPQAVEQQVAGLKEEVPEEAKVG----RVDLRDLPLVTIDGEDARDFDDAVYC 285
Query: 200 EADTG---RLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLD 370
E G RLWV IADVS +++P PL EA R ++Y P++ I MLP L
Sbjct: 286 EKKRGGGWRLWVAIADVSYYVRPPTPLDREARNRGTSVYFPSQVIPMLPEVL-------- 337
Query: 371 ASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTY 514
SNG ++ + + L + TV+ G L + +++ RLTY
Sbjct: 338 -SNGLCSLNPQVDR-LCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTY 383
[218][TOP]
>UniRef100_A1AJ84 Exoribonuclease R, RNase R n=6 Tax=Escherichia RepID=A1AJ84_ECOK1
Length = 827
Score = 66.2 bits (160), Expect = 1e-09
Identities = 52/168 (30%), Positives = 79/168 (47%), Gaps = 3/168 (1%)
Frame = +2
Query: 20 SHFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSW 199
+H P + +++ GL P ++VG R DLR L +D + DDA+
Sbjct: 244 THEIPYIWPQAVEQQVAGLKEEVPEEAKVG----RVDLRDLPLVTIDGEDARDFDDAVYC 299
Query: 200 EADTG---RLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLD 370
E G RLWV IADVS +++P PL EA R ++Y P++ I MLP L
Sbjct: 300 EKKRGGGWRLWVAIADVSYYVRPPTPLDREARNRGTSVYFPSQVIPMLPEVL-------- 351
Query: 371 ASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTY 514
SNG ++ + + L + TV+ G L + +++ RLTY
Sbjct: 352 -SNGLCSLNPQVDR-LCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTY 397
[219][TOP]
>UniRef100_B6W7V2 Putative uncharacterized protein n=1 Tax=Anaerococcus hydrogenalis
DSM 7454 RepID=B6W7V2_9FIRM
Length = 700
Score = 66.2 bits (160), Expect = 1e-09
Identities = 47/134 (35%), Positives = 70/134 (52%), Gaps = 2/134 (1%)
Frame = +2
Query: 122 RTDLRHLDSYAVDSASTFEVDDAMSWEADTGR--LWVHIADVSAWLKPGEPLTTEALRRS 295
R DLR L + +D + + DDA+S E D L+VHIADVS ++K + EA +R
Sbjct: 245 REDLRDLFTVTIDGRDSKDFDDAISIEKDNEDYILYVHIADVSHYVKEKSEIDKEAYQRG 304
Query: 296 CTLYLPTETITMLPLELARDGLSLDASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQV 475
+ YL + MLP EL SNG ++ EN L+LS + + G + D ++
Sbjct: 305 NSTYLYNLVLPMLPEEL---------SNGICSLNPNENR-LSLSLKMKINDKGKVIDYKI 354
Query: 476 MPSLIRRPWRLTYE 517
+LIR +RL Y+
Sbjct: 355 YKALIRSNYRLVYD 368
[220][TOP]
>UniRef100_A3DBQ8 Ribonuclease R n=2 Tax=Clostridium thermocellum RepID=A3DBQ8_CLOTH
Length = 757
Score = 66.2 bits (160), Expect = 1e-09
Identities = 47/134 (35%), Positives = 68/134 (50%), Gaps = 3/134 (2%)
Frame = +2
Query: 122 RTDLRHLDSYAVDSASTFEVDDAMSWEA---DTGRLWVHIADVSAWLKPGEPLTTEALRR 292
R DLR L +D ++DDA+S E RL VHIADVS ++K G PL EAL+R
Sbjct: 246 RRDLRDLTMVTIDGEDAKDLDDAVSIERLPNGNYRLGVHIADVSYYVKEGSPLDKEALKR 305
Query: 293 SCTLYLPTETITMLPLELARDGLSLDASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQ 472
++YL I M P EL SNG ++ + + LA + + + G + D +
Sbjct: 306 GTSVYLVDRVIPMFPKEL---------SNGICSLNPKVDR-LAFTVMMEIDKSGRVVDHE 355
Query: 473 VMPSLIRRPWRLTY 514
+ S+I R+TY
Sbjct: 356 IFESVINVNERMTY 369
[221][TOP]
>UniRef100_A5ZEJ5 Putative uncharacterized protein n=1 Tax=Bacteroides caccae ATCC
43185 RepID=A5ZEJ5_9BACE
Length = 718
Score = 66.2 bits (160), Expect = 1e-09
Identities = 54/169 (31%), Positives = 81/169 (47%), Gaps = 3/169 (1%)
Frame = +2
Query: 20 SHFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSW 199
+ F P P+ E A + A A E+ A R D R + ++ +D + DDA+S
Sbjct: 231 AEFGLPYVYPKSVETAADKIPAEISAEEI---AKREDFRKVTTFTIDPKDAKDFDDALSI 287
Query: 200 EADTGRLW---VHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLD 370
LW VHIADV+ ++K G + EA +R+ ++YL TI MLP L SL
Sbjct: 288 RKLKEGLWEVGVHIADVTHYVKEGGIIDKEAEKRATSVYLVDRTIPMLPERLCNFICSL- 346
Query: 371 ASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTYE 517
+EE+ LA S F + E G + D +++ ++I R TYE
Sbjct: 347 ------RPNEEK---LAFSVIFNITEKGEVKDSRIVHTVINSDRRFTYE 386
[222][TOP]
>UniRef100_Q4P7A2 Putative uncharacterized protein n=1 Tax=Ustilago maydis
RepID=Q4P7A2_USTMA
Length = 1921
Score = 66.2 bits (160), Expect = 1e-09
Identities = 45/132 (34%), Positives = 65/132 (49%), Gaps = 9/132 (6%)
Frame = +2
Query: 149 YAVDSASTFEVDDAMSWEADTG--RLWVH--IADVSAWLKPGEPLTTEALRRSCTLYLPT 316
Y +D FE+DD +S E +G + WVH IAD +AW+KP + L A RR TLY P
Sbjct: 1425 YVIDDQDAFELDDGISIETVSGTDQAWVHVHIADPTAWIKPDDELGQRAERRFQTLYFPE 1484
Query: 317 ETITMLPLELARDGLSLDASNGH----AHVSEEENAVLALSFGFTV-AEDGSLGDPQVMP 481
MLP E R G+ L A++ + +A ++F V G + D +V P
Sbjct: 1485 ARWAMLPDEFVRSGIGLRAASSSGGTGTGTGADVDAQRVMTFSALVDLPSGLVQDTKVRP 1544
Query: 482 SLIRRPWRLTYE 517
+LI +Y+
Sbjct: 1545 ALIHNVETTSYD 1556
[223][TOP]
>UniRef100_Q8A378 Ribonuclease R n=1 Tax=Bacteroides thetaiotaomicron
RepID=Q8A378_BACTN
Length = 718
Score = 65.9 bits (159), Expect = 2e-09
Identities = 49/151 (32%), Positives = 76/151 (50%), Gaps = 5/151 (3%)
Frame = +2
Query: 80 SAGPLASEVGPS--ACRTDLRHLDSYAVDSASTFEVDDAMSWEADTGRLW---VHIADVS 244
+A + +E+ P A R D R + ++ +D + DDA+S LW VHIADV+
Sbjct: 246 AADKIPAEITPEEIARREDFRKVTTFTIDPKDAKDFDDALSIRPIKDGLWEVGVHIADVT 305
Query: 245 AWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLDASNGHAHVSEEENAVLAL 424
++K G + EA +R+ ++YL TI MLP L SL +EE+ LA
Sbjct: 306 HYVKEGGIIDKEAEKRATSVYLVDRTIPMLPERLCNFICSL-------RPNEEK---LAF 355
Query: 425 SFGFTVAEDGSLGDPQVMPSLIRRPWRLTYE 517
S F + E G + D +++ ++I R TYE
Sbjct: 356 SVIFDITEKGEVRDSRIVHTVINSDRRFTYE 386
[224][TOP]
>UniRef100_Q1LSR0 Ribonuclease R n=1 Tax=Baumannia cicadellinicola str. Hc
(Homalodisca coagulata) RepID=Q1LSR0_BAUCH
Length = 749
Score = 65.9 bits (159), Expect = 2e-09
Identities = 50/167 (29%), Positives = 75/167 (44%), Gaps = 2/167 (1%)
Frame = +2
Query: 20 SHFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSW 199
S+ P + PE++E A P + R DLR L +D + DDA+
Sbjct: 232 SYALPYIWPPEVEEQAATFTKEVPEVVK----RSRVDLRMLPLVTIDGEEARDFDDAVYC 287
Query: 200 EADTG--RLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLDA 373
E + RLWV IADVS +++P PL EA R+ ++Y P++ I MLP L+ SL+
Sbjct: 288 EKKSSGWRLWVAIADVSYYVRPHTPLDNEARNRATSIYFPSQVIPMLPEILSHSLCSLNP 347
Query: 374 SNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTY 514
L + T++ G L + ++I RLTY
Sbjct: 348 QVDR----------LCMVCEMTISAQGKLSSYKFYEAIINSKARLTY 384
[225][TOP]
>UniRef100_B5FRN5 Ribonuclease R n=1 Tax=Salmonella enterica subsp. enterica serovar
Dublin str. CT_02021853 RepID=B5FRN5_SALDC
Length = 812
Score = 65.9 bits (159), Expect = 2e-09
Identities = 50/168 (29%), Positives = 79/168 (47%), Gaps = 3/168 (1%)
Frame = +2
Query: 20 SHFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSW 199
+H P + +++ GL P ++VG R DLR L +D + DDA+
Sbjct: 230 THEIPYIWPQAVEQQVTGLKEEVPEEAKVG----RVDLRDLPLVTIDGEDARDFDDAVYC 285
Query: 200 EADTG---RLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLD 370
E G RLWV IADVS +++P PL EA R ++Y P++ + MLP L
Sbjct: 286 EKKRGGGWRLWVAIADVSYYVRPPTPLDREARNRGTSVYFPSQVVPMLPEVL-------- 337
Query: 371 ASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTY 514
SNG ++ + + L + T++ G L + +++ RLTY
Sbjct: 338 -SNGLCSLNPQVDR-LCMVCEMTISAKGRLTGYKFYEAVMSSHARLTY 383
[226][TOP]
>UniRef100_B2VCW6 Ribonuclease R n=1 Tax=Erwinia tasmaniensis RepID=B2VCW6_ERWT9
Length = 827
Score = 65.9 bits (159), Expect = 2e-09
Identities = 49/146 (33%), Positives = 72/146 (49%), Gaps = 5/146 (3%)
Frame = +2
Query: 92 LASEVGPSACR--TDLRHLDSYAVDSASTFEVDDAMSWEADTG---RLWVHIADVSAWLK 256
L+ EV A R DLR L +D + DDA+ E G RLWV IADVS +++
Sbjct: 262 LSEEVPEEATRGRVDLRDLPLVTIDGEDARDFDDAVFCERKRGGGWRLWVAIADVSYYVR 321
Query: 257 PGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLDASNGHAHVSEEENAVLALSFGF 436
PG PL EA+ R ++Y P++ + MLP L SNG ++ E + L +
Sbjct: 322 PGTPLDDEAINRGTSVYFPSQVVPMLPEVL---------SNGLCSLNPEVDR-LCMVCEM 371
Query: 437 TVAEDGSLGDPQVMPSLIRRPWRLTY 514
T++ G L + +++ RLTY
Sbjct: 372 TISATGKLTGYKHYEAVMNSFARLTY 397
[227][TOP]
>UniRef100_B2UY13 Ribonuclease R n=1 Tax=Clostridium botulinum E3 str. Alaska E43
RepID=B2UY13_CLOBA
Length = 746
Score = 65.9 bits (159), Expect = 2e-09
Identities = 47/134 (35%), Positives = 74/134 (55%), Gaps = 3/134 (2%)
Frame = +2
Query: 122 RTDLRHLDSYAVDSASTFEVDDAMSWEA-DTG--RLWVHIADVSAWLKPGEPLTTEALRR 292
R DLR+L +D ++DDA+S E D G +L VHIADV+ +++ L EAL+R
Sbjct: 252 RVDLRNLRMVTIDGEDAKDLDDAVSIEKLDDGNFKLGVHIADVTHYVRENNILDKEALKR 311
Query: 293 SCTLYLPTETITMLPLELARDGLSLDASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQ 472
+ ++YL I MLP +L SNG ++ + + LALS + G++ D +
Sbjct: 312 ATSVYLIDRVIPMLPKQL---------SNGICSLNPKVDR-LALSCFMVINNKGTVVDHE 361
Query: 473 VMPSLIRRPWRLTY 514
+M S+I+ R+TY
Sbjct: 362 IMESVIKTSERMTY 375
[228][TOP]
>UniRef100_B1XXK0 Ribonuclease R n=1 Tax=Leptothrix cholodnii SP-6 RepID=B1XXK0_LEPCP
Length = 733
Score = 65.9 bits (159), Expect = 2e-09
Identities = 57/169 (33%), Positives = 77/169 (45%), Gaps = 8/169 (4%)
Frame = +2
Query: 32 PPTFSPELQEAANGLLSAGPLASEVGPSAC--RTDLRHLDSYAVDSASTFEVDDAMSWE- 202
P FSPE L G L V + C R DLR + +D + DDA+ E
Sbjct: 153 PHRFSPET------LAQTGKLPDRVRAADCKGRIDLRDVPLVTIDGEDARDFDDAVYCEP 206
Query: 203 ADTGR-----LWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSL 367
A GR L V IADVS ++KPGEPL +A R+ ++Y P I MLP +L
Sbjct: 207 AKVGRTKGWRLLVAIADVSHYVKPGEPLDDDAYERATSVYFPRRVIPMLPEKL------- 259
Query: 368 DASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTY 514
SNG ++ +E L++ V G + Q P++I R TY
Sbjct: 260 --SNGLCSLNPDEER-LSMVCDMLVNASGEVHAYQFYPAVILSHARFTY 305
[229][TOP]
>UniRef100_A3D8Q9 RNAse R n=1 Tax=Shewanella baltica OS155 RepID=A3D8Q9_SHEB5
Length = 807
Score = 65.9 bits (159), Expect = 2e-09
Identities = 51/164 (31%), Positives = 77/164 (46%), Gaps = 3/164 (1%)
Frame = +2
Query: 32 PPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSWEADT 211
P T+SP +++ + A +VG R DLRHL +D + DDA+ E
Sbjct: 234 PHTWSPVIEKKLRRIPDEVTDADKVG----RVDLRHLPLVTIDGEDARDFDDAVYAEKKA 289
Query: 212 G---RLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLDASNG 382
G RLWV IADVS +++ L EA R ++Y P++ I MLP +++ SL
Sbjct: 290 GGGWRLWVAIADVSYYVRTDSALDIEARARGNSVYFPSQVIPMLPEKISNGLCSL----- 344
Query: 383 HAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTY 514
+ HV L + TV+ G L + P+++ R TY
Sbjct: 345 NPHVDR-----LCMVAEMTVSAKGKLSGYKFYPAVMYSHARFTY 383
[230][TOP]
>UniRef100_C9QCX5 Ribonuclease R n=1 Tax=Vibrio orientalis CIP 102891
RepID=C9QCX5_VIBOR
Length = 819
Score = 65.9 bits (159), Expect = 2e-09
Identities = 51/168 (30%), Positives = 79/168 (47%), Gaps = 3/168 (1%)
Frame = +2
Query: 20 SHFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSW 199
+H P + + + GL P ++VG R DLR L +D + DDA+
Sbjct: 237 THQIPHEWPEAVDKQIEGLGEEVPEEAKVG----RVDLRDLPLVTIDGEDARDFDDAVYC 292
Query: 200 EADTG---RLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLD 370
E G RLWV IADVS +++P L EA+ R ++Y P++ + MLP L
Sbjct: 293 EKKKGGGWRLWVAIADVSYYVRPDSALDKEAINRGNSVYFPSQVVPMLPEVL-------- 344
Query: 371 ASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTY 514
SNG ++ + + L + TV+E G L + +++ RLTY
Sbjct: 345 -SNGLCSLNPQVDR-LCMVCEMTVSETGKLSGYKHYEAVMNSHARLTY 390
[231][TOP]
>UniRef100_C9P040 Ribonuclease R n=1 Tax=Vibrio coralliilyticus ATCC BAA-450
RepID=C9P040_9VIBR
Length = 821
Score = 65.9 bits (159), Expect = 2e-09
Identities = 50/168 (29%), Positives = 79/168 (47%), Gaps = 3/168 (1%)
Frame = +2
Query: 20 SHFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSW 199
+H P + E+ + GL P ++ G R DLR L +D + DDA+
Sbjct: 237 THQIPHEWPEEVDKQIEGLGEEVPEEAKQG----RVDLRELPLVTIDGEDARDFDDAVYC 292
Query: 200 EADTG---RLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLD 370
EA RLWV IADVS +++P L EA+ R ++Y P++ + MLP L
Sbjct: 293 EAKKSGGWRLWVAIADVSYYVRPDSALDKEAINRGNSVYFPSQVVPMLPEVL-------- 344
Query: 371 ASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTY 514
SNG ++ + + L + T++E G L + +++ RLTY
Sbjct: 345 -SNGLCSLNPQVDR-LCMVCEMTISESGKLSGYKHYEAVMNSHARLTY 390
[232][TOP]
>UniRef100_C7HU91 Ribonuclease R n=1 Tax=Anaerococcus vaginalis ATCC 51170
RepID=C7HU91_9FIRM
Length = 706
Score = 65.9 bits (159), Expect = 2e-09
Identities = 47/134 (35%), Positives = 70/134 (52%), Gaps = 2/134 (1%)
Frame = +2
Query: 122 RTDLRHLDSYAVDSASTFEVDDAMSWEADTGR--LWVHIADVSAWLKPGEPLTTEALRRS 295
R DLR L + +D + + DDA+S E D L+VHIADVS ++K + EA +R
Sbjct: 245 RKDLRDLFTVTIDGRDSKDFDDAISIEKDEEDFILYVHIADVSHYVKENSEIDKEAYQRG 304
Query: 296 CTLYLPTETITMLPLELARDGLSLDASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQV 475
+ YL + MLP EL SNG ++ EN LALS + + G + D ++
Sbjct: 305 NSTYLYNIVLPMLPEEL---------SNGICSLNPNENR-LALSLKMRINKLGKVVDYKI 354
Query: 476 MPSLIRRPWRLTYE 517
S+I+ +RL Y+
Sbjct: 355 YKSIIKSNYRLVYD 368
[233][TOP]
>UniRef100_C6IHK3 Ribonuclease R n=1 Tax=Bacteroides sp. 1_1_6 RepID=C6IHK3_9BACE
Length = 718
Score = 65.9 bits (159), Expect = 2e-09
Identities = 49/151 (32%), Positives = 76/151 (50%), Gaps = 5/151 (3%)
Frame = +2
Query: 80 SAGPLASEVGPS--ACRTDLRHLDSYAVDSASTFEVDDAMSWEADTGRLW---VHIADVS 244
+A + +E+ P A R D R + ++ +D + DDA+S LW VHIADV+
Sbjct: 246 AADKIPAEITPEEIARREDFRKVTTFTIDPKDAKDFDDALSIRPIKDGLWEVGVHIADVT 305
Query: 245 AWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLDASNGHAHVSEEENAVLAL 424
++K G + EA +R+ ++YL TI MLP L SL +EE+ LA
Sbjct: 306 HYVKEGGIIDKEAEKRATSVYLVDRTIPMLPERLCNFICSL-------RPNEEK---LAF 355
Query: 425 SFGFTVAEDGSLGDPQVMPSLIRRPWRLTYE 517
S F + E G + D +++ ++I R TYE
Sbjct: 356 SVIFDITEKGEVKDSRIVHTVINSDRRFTYE 386
[234][TOP]
>UniRef100_C5UY77 Ribonuclease R n=1 Tax=Clostridium botulinum E1 str. 'BoNT E
Beluga' RepID=C5UY77_CLOBO
Length = 746
Score = 65.9 bits (159), Expect = 2e-09
Identities = 47/134 (35%), Positives = 74/134 (55%), Gaps = 3/134 (2%)
Frame = +2
Query: 122 RTDLRHLDSYAVDSASTFEVDDAMSWEA-DTG--RLWVHIADVSAWLKPGEPLTTEALRR 292
R DLR+L +D ++DDA+S E D G +L VHIADV+ +++ L EAL+R
Sbjct: 252 RVDLRNLRMVTIDGEDAKDLDDAVSIEKLDDGSFKLGVHIADVTHYVRENNILDKEALKR 311
Query: 293 SCTLYLPTETITMLPLELARDGLSLDASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQ 472
+ ++YL I MLP +L SNG ++ + + LALS + G++ D +
Sbjct: 312 ATSVYLIDRVIPMLPKQL---------SNGICSLNPKVDR-LALSCFMVINNKGTVVDHE 361
Query: 473 VMPSLIRRPWRLTY 514
+M S+I+ R+TY
Sbjct: 362 IMESVIKTSERMTY 375
[235][TOP]
>UniRef100_C4U5E8 Ribonuclease R n=1 Tax=Yersinia aldovae ATCC 35236
RepID=C4U5E8_YERAL
Length = 850
Score = 65.9 bits (159), Expect = 2e-09
Identities = 49/168 (29%), Positives = 80/168 (47%), Gaps = 3/168 (1%)
Frame = +2
Query: 20 SHFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSW 199
+H P T+ P++++ L P ++ G R DLR+L +D + DDA+
Sbjct: 230 THEIPHTWPPQVEKQVADLKEQVPEEAKKG----RVDLRNLPLVTIDGEDARDFDDAVHC 285
Query: 200 EADTG---RLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLD 370
E G RLWV IADVS +++P L EA R ++Y P++ + MLP L
Sbjct: 286 EKKRGGGWRLWVAIADVSYYVRPRTALDDEARSRGNSVYFPSQVVPMLPEVL-------- 337
Query: 371 ASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTY 514
SNG ++ + + L + T++ G L + +++ RLTY
Sbjct: 338 -SNGLCSLNPQVDR-LCMVCEMTISSQGKLSSYKFYEAVMSSHARLTY 383
[236][TOP]
>UniRef100_C4T7W1 Ribonuclease R n=1 Tax=Yersinia intermedia ATCC 29909
RepID=C4T7W1_YERIN
Length = 824
Score = 65.9 bits (159), Expect = 2e-09
Identities = 49/168 (29%), Positives = 80/168 (47%), Gaps = 3/168 (1%)
Frame = +2
Query: 20 SHFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSW 199
+H P T+ P++++ L P ++ G R DLR+L +D + DDA+
Sbjct: 206 THEIPHTWPPQVEKQVADLKEQVPEEAKKG----RVDLRNLPLVTIDGEDARDFDDAVYC 261
Query: 200 EADTG---RLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLD 370
E G RLWV IADVS +++P L EA R ++Y P++ + MLP L
Sbjct: 262 EKKRGGGWRLWVAIADVSYYVRPRTALDDEARNRGNSVYFPSQVVPMLPEVL-------- 313
Query: 371 ASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTY 514
SNG ++ + + L + T++ G L + +++ RLTY
Sbjct: 314 -SNGLCSLNPQVDR-LCMVCEMTISSQGKLSSYKFYEAVMSSHARLTY 359
[237][TOP]
>UniRef100_C0GFC0 Ribonuclease R n=1 Tax=Dethiobacter alkaliphilus AHT 1
RepID=C0GFC0_9FIRM
Length = 709
Score = 65.9 bits (159), Expect = 2e-09
Identities = 48/135 (35%), Positives = 65/135 (48%), Gaps = 3/135 (2%)
Frame = +2
Query: 122 RTDLRHLDSYAVDSASTFEVDDAMSW-EADTGR--LWVHIADVSAWLKPGEPLTTEALRR 292
R DLR L +D A ++DDA+S + D G L VHIADV ++K G L EA R
Sbjct: 245 RMDLRDLPMVTIDGADAKDLDDAVSLHQKDNGNWELGVHIADVGHYVKEGTALDKEAFHR 304
Query: 293 SCTLYLPTETITMLPLELARDGLSLDASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQ 472
++YL I MLP EL+ D SL+ LA+S + G +
Sbjct: 305 GTSIYLVDRVIPMLPPELSNDLCSLNPQVDR----------LAMSVFMELNHQGKVVSHD 354
Query: 473 VMPSLIRRPWRLTYE 517
PS+IR R+TY+
Sbjct: 355 FGPSVIRTQERMTYD 369
[238][TOP]
>UniRef100_C0FBQ4 Putative uncharacterized protein n=1 Tax=Clostridium sp. M62/1
RepID=C0FBQ4_9CLOT
Length = 757
Score = 65.9 bits (159), Expect = 2e-09
Identities = 49/133 (36%), Positives = 70/133 (52%), Gaps = 2/133 (1%)
Frame = +2
Query: 122 RTDLRHLDSYAVDSASTFEVDDAMSWE--ADTGRLWVHIADVSAWLKPGEPLTTEALRRS 295
R DLR L + +D ++DDA+S E D RL VHIADVS +++ L EALRRS
Sbjct: 296 RKDLRGLLTVTIDGEEAKDLDDAISIERAGDGYRLGVHIADVSHYVREYTALDAEALRRS 355
Query: 296 CTLYLPTETITMLPLELARDGLSLDASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQV 475
++YL I MLP L SNG ++E E+ L LS + G++ ++
Sbjct: 356 TSVYLVDRVIPMLPHRL---------SNGICSLNEGEDR-LTLSCLMDIDSQGNVVGHEI 405
Query: 476 MPSLIRRPWRLTY 514
++IR R+TY
Sbjct: 406 AETVIRSDRRMTY 418
[239][TOP]
>UniRef100_B1EH98 Ribonuclease R n=1 Tax=Escherichia albertii TW07627
RepID=B1EH98_9ESCH
Length = 813
Score = 65.9 bits (159), Expect = 2e-09
Identities = 51/168 (30%), Positives = 78/168 (46%), Gaps = 3/168 (1%)
Frame = +2
Query: 20 SHFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSW 199
+H P + +++ GL P ++ G R DLR L +D + DDA+
Sbjct: 230 THEIPHIWPQAVEQQVTGLKEEVPEEAKAG----RVDLRDLPLVTIDGEDARDFDDAVYC 285
Query: 200 EADTG---RLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLD 370
E G RLWV IADVS +++P PL EA R ++Y P++ I MLP L
Sbjct: 286 EKKRGGGWRLWVAIADVSYYVRPPTPLDREARNRGTSVYFPSQVIPMLPEVL-------- 337
Query: 371 ASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTY 514
SNG ++ + + L + TV+ G L + +++ RLTY
Sbjct: 338 -SNGLCSLNPQVDR-LCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTY 383
[240][TOP]
>UniRef100_A8RRW9 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC
BAA-613 RepID=A8RRW9_9CLOT
Length = 748
Score = 65.9 bits (159), Expect = 2e-09
Identities = 53/160 (33%), Positives = 79/160 (49%), Gaps = 7/160 (4%)
Frame = +2
Query: 56 QEAANGLLSAGPLASEV---GPSACRTDLRHLDSYAVDSASTFEVDDAMSWEADTGR--- 217
+E +G G L S G A R DLR L + +D ++DDA++ G+
Sbjct: 251 EETWDGPYGIGDLTSPADWTGDLAGRLDLRGLRTVTIDGEDAKDLDDAVTL-CRNGQGGY 309
Query: 218 -LWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLDASNGHAHV 394
L VHIADVS ++K G PL EAL+R ++YL I MLP +L+ SL+A
Sbjct: 310 ILGVHIADVSHYVKEGRPLDKEALKRGTSVYLVDRVIPMLPHKLSNGICSLNAGTDR--- 366
Query: 395 SEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTY 514
LALS + + G++ D ++ ++I R+TY
Sbjct: 367 -------LALSCIMELDDQGNVLDHKIAETVIHVDRRMTY 399
[241][TOP]
>UniRef100_Q7UFR0 Ribonuclease R n=1 Tax=Rhodopirellula baltica RepID=Q7UFR0_RHOBA
Length = 764
Score = 65.5 bits (158), Expect = 2e-09
Identities = 50/174 (28%), Positives = 80/174 (45%), Gaps = 2/174 (1%)
Frame = +2
Query: 2 SLELRASHFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEV 181
+L + + P FS ++ + A A +V P+ R DL + + +D +
Sbjct: 234 TLTIMRQYALPDEFSEDVLDEARE--QADAFDDDVVPTD-RKDLTDMLTITIDPFDARDF 290
Query: 182 DDAMSWEADTGR--LWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARD 355
DDA+S + + GR LWVHIADVS ++ PG L EA RR ++YLP I M+P
Sbjct: 291 DDAISLQREDGRWRLWVHIADVSHFVPPGGKLDVEARRRGTSVYLPDRVIPMIP------ 344
Query: 356 GLSLDASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTYE 517
+ + H + E L + + +D ++ +V + IR R YE
Sbjct: 345 ----EIISNHLASLQPERMRLVKTVEIEMLDDLTITHSEVHNAAIRSDKRFNYE 394
[242][TOP]
>UniRef100_Q253K0 Ribonuclease R n=1 Tax=Chlamydophila felis Fe/C-56
RepID=Q253K0_CHLFF
Length = 676
Score = 65.5 bits (158), Expect = 2e-09
Identities = 46/135 (34%), Positives = 69/135 (51%), Gaps = 3/135 (2%)
Frame = +2
Query: 122 RTDLRHLDSYAVDSASTFEVDDAMSWEADTGR---LWVHIADVSAWLKPGEPLTTEALRR 292
R DLR L + +DS + + DDA+S D L VHIADVS ++ P L EA +R
Sbjct: 206 RKDLRDLLCFTIDSITAKDFDDAVSLTYDHNDNYILGVHIADVSHYVTPHSALDQEASKR 265
Query: 293 SCTLYLPTETITMLPLELARDGLSLDASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQ 472
++Y P + I MLP L+ + SL + LA+S T + G L + +
Sbjct: 266 CNSIYFPGKVIPMLPPALSDNLCSLKPNVDR----------LAVSVFMTFTKSGHLSNYE 315
Query: 473 VMPSLIRRPWRLTYE 517
+ S+IR +R+TY+
Sbjct: 316 IFRSVIRSKYRMTYD 330
[243][TOP]
>UniRef100_C4K3C1 RNase R, 3'-5' exoribonuclease n=1 Tax=Candidatus Hamiltonella
defensa 5AT (Acyrthosiphon pisum) RepID=C4K3C1_HAMD5
Length = 782
Score = 65.5 bits (158), Expect = 2e-09
Identities = 52/168 (30%), Positives = 78/168 (46%), Gaps = 3/168 (1%)
Frame = +2
Query: 20 SHFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSW 199
+H P +S E+++ L P ++ G R DLR L +D + DDA+
Sbjct: 230 THEIPYLWSDEIKKEIGQLKEEVPEEAKQG----RVDLRALPLMTIDGEDARDFDDAVYC 285
Query: 200 EADTG---RLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLD 370
E G RLWV IADVS +++P L EA RS ++Y P++ I MLP L+ SL+
Sbjct: 286 EKKRGGGWRLWVAIADVSYYVRPNTALDDEAKNRSNSVYFPSQVIPMLPEILSNGLCSLN 345
Query: 371 ASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTY 514
S L++ T++ G L + + I+ RLTY
Sbjct: 346 PSVDR----------LSMVCEMTLSAQGKLSSYRFYEATIKSHARLTY 383
[244][TOP]
>UniRef100_Q3RAQ3 3'-5' exoribonuclease, VacB and RNase II n=1 Tax=Xylella fastidiosa
subsp. sandyi Ann-1 RepID=Q3RAQ3_XYLFA
Length = 836
Score = 65.5 bits (158), Expect = 2e-09
Identities = 45/117 (38%), Positives = 61/117 (52%), Gaps = 2/117 (1%)
Frame = +2
Query: 23 HFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSWE 202
H P F E+ +AA +A PL G R DLR L +D + DDA+ E
Sbjct: 318 HQLPHVFPQEVLDAA----AAVPLTVTPGMLGGRVDLRALPLVTIDGEDAKDFDDAVYCE 373
Query: 203 ADTG--RLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSL 367
++ G RL V IADVS +++PG PL EAL R+ ++Y P + MLP L+ SL
Sbjct: 374 SNRGGVRLVVAIADVSHYVRPGTPLDEEALTRATSVYFPGFVVPMLPETLSNGICSL 430
[245][TOP]
>UniRef100_D0FNU4 Ribonuclease R n=1 Tax=Erwinia pyrifoliae RepID=D0FNU4_ERWPY
Length = 813
Score = 65.5 bits (158), Expect = 2e-09
Identities = 45/134 (33%), Positives = 67/134 (50%), Gaps = 3/134 (2%)
Frame = +2
Query: 122 RTDLRHLDSYAVDSASTFEVDDAMSWEADTG---RLWVHIADVSAWLKPGEPLTTEALRR 292
R DLR L +D + DDA+ E G RLWV IADVS +++PG PL EA+ R
Sbjct: 260 RVDLRDLPLVTIDGEDARDFDDAVFCERKRGGGWRLWVAIADVSYYVRPGTPLDDEAVNR 319
Query: 293 SCTLYLPTETITMLPLELARDGLSLDASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQ 472
++Y P++ + MLP L SNG ++ E + L + T++ G L +
Sbjct: 320 GTSVYFPSQVVPMLPEVL---------SNGLCSLNPEVDR-LCMVCEMTISSTGKLTGYK 369
Query: 473 VMPSLIRRPWRLTY 514
+++ RLTY
Sbjct: 370 HYEAVMNSFARLTY 383
[246][TOP]
>UniRef100_C9QTP6 VacB and RNase II family 3'-5' exoribonuclease n=1 Tax=Escherichia
coli DH1 RepID=C9QTP6_ECOLX
Length = 813
Score = 65.5 bits (158), Expect = 2e-09
Identities = 51/168 (30%), Positives = 78/168 (46%), Gaps = 3/168 (1%)
Frame = +2
Query: 20 SHFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSW 199
+H P + +++ GL P ++ G R DLR L +D + DDA+
Sbjct: 230 THEIPYIWPQAVEQQVAGLKEEVPEEAKAG----RVDLRDLPLVTIDGEDARDFDDAVYC 285
Query: 200 EADTG---RLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLD 370
E G RLWV IADVS +++P PL EA R ++Y P++ I MLP L
Sbjct: 286 EKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVL-------- 337
Query: 371 ASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTY 514
SNG ++ + + L + TV+ G L + +++ RLTY
Sbjct: 338 -SNGLCSLNPQVDR-LCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTY 383
[247][TOP]
>UniRef100_C7RM85 Ribonuclease R n=1 Tax=Candidatus Accumulibacter phosphatis clade
IIA str. UW-1 RepID=C7RM85_9PROT
Length = 723
Score = 65.5 bits (158), Expect = 2e-09
Identities = 53/159 (33%), Positives = 76/159 (47%), Gaps = 3/159 (1%)
Frame = +2
Query: 50 ELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSWEADTGRLW-- 223
E AA +A P S RTDLR L +D + + DDA+ E TGR W
Sbjct: 244 EFSSAALAEAAALPDGLTSSESEGRTDLRALPLVTIDGETARDFDDAVFAEK-TGRGWRL 302
Query: 224 -VHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLDASNGHAHVSE 400
V IADVS +++PG L E L+R ++Y P I MLP +L SNG ++
Sbjct: 303 VVAIADVSHYVRPGMALDREGLQRGNSVYFPRRVIPMLPEKL---------SNGLCSLNP 353
Query: 401 EENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTYE 517
+ + LA+ + G + D + P++ R RLTY+
Sbjct: 354 DVDR-LAMVCDMNIDAGGEIVDYRFYPAVFRSQARLTYD 391
[248][TOP]
>UniRef100_C4SLD1 Ribonuclease R n=1 Tax=Yersinia frederiksenii ATCC 33641
RepID=C4SLD1_YERFR
Length = 505
Score = 65.5 bits (158), Expect = 2e-09
Identities = 49/168 (29%), Positives = 80/168 (47%), Gaps = 3/168 (1%)
Frame = +2
Query: 20 SHFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSW 199
+H P T+ P++++ L P ++ G R DLR+L +D + DDA+
Sbjct: 230 THEIPHTWPPQVEKQVADLKEQVPEEAKKG----RVDLRNLPLVTIDGEDARDFDDAVYC 285
Query: 200 EADTG---RLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLD 370
E G RLWV IADVS +++P L EA R ++Y P++ + MLP L
Sbjct: 286 EKKRGGGWRLWVAIADVSYYVRPRTALDDEARSRGNSVYFPSQVVPMLPEVL-------- 337
Query: 371 ASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTY 514
SNG ++ + + L + T++ G L + +++ RLTY
Sbjct: 338 -SNGLCSLNPQVDR-LCMVCEMTISSQGKLSSYKFYEAVMSSHARLTY 383
[249][TOP]
>UniRef100_C4S6W6 Ribonuclease R n=1 Tax=Yersinia bercovieri ATCC 43970
RepID=C4S6W6_YERBE
Length = 854
Score = 65.5 bits (158), Expect = 2e-09
Identities = 49/168 (29%), Positives = 80/168 (47%), Gaps = 3/168 (1%)
Frame = +2
Query: 20 SHFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSW 199
+H P T+ P++++ L P ++ G R DLR+L +D + DDA+
Sbjct: 230 THEIPHTWPPQVEKQVADLKEQVPEEAKKG----RVDLRNLPLVTIDGEDARDFDDAVYC 285
Query: 200 EADTG---RLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLD 370
E G RLWV IADVS +++P L EA R ++Y P++ + MLP L
Sbjct: 286 EKKRGGGWRLWVAIADVSYYVRPRTALDDEARSRGNSVYFPSQVVPMLPEVL-------- 337
Query: 371 ASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTY 514
SNG ++ + + L + T++ G L + +++ RLTY
Sbjct: 338 -SNGLCSLNPQVDR-LCMVCEMTISSQGKLSSYKFYEAVMSSHARLTY 383
[250][TOP]
>UniRef100_C1NB72 VacB n=1 Tax=Escherichia sp. 1_1_43 RepID=C1NB72_9ESCH
Length = 800
Score = 65.5 bits (158), Expect = 2e-09
Identities = 51/168 (30%), Positives = 78/168 (46%), Gaps = 3/168 (1%)
Frame = +2
Query: 20 SHFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSW 199
+H P + +++ GL P ++ G R DLR L +D + DDA+
Sbjct: 244 THEIPYIWPQAVEQQVAGLKEEVPEEAKAG----RVDLRDLPLVTIDGEDARDFDDAVYC 299
Query: 200 EADTG---RLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLD 370
E G RLWV IADVS +++P PL EA R ++Y P++ I MLP L
Sbjct: 300 EKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVL-------- 351
Query: 371 ASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTY 514
SNG ++ + + L + TV+ G L + +++ RLTY
Sbjct: 352 -SNGLCSLNPQVDR-LCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTY 397