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[1][TOP]
>UniRef100_O04142 DNA-directed RNA polymerase (Fragment) n=1 Tax=Porphyra yezoensis
RepID=O04142_PORYE
Length = 1685
Score = 183 bits (464), Expect = 6e-45
Identities = 95/95 (100%), Positives = 95/95 (100%)
Frame = +3
Query: 3 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 182
SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ
Sbjct: 914 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 973
Query: 183 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLL 287
LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLL
Sbjct: 974 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLL 1008
[2][TOP]
>UniRef100_O09451 DNA-directed RNA polymerase (Fragment) n=1 Tax=Bonnemaisonia hamifera
RepID=O09451_9FLOR
Length = 1732
Score = 79.0 bits (193), Expect = 2e-13
Identities = 44/98 (44%), Positives = 61/98 (62%), Gaps = 3/98 (3%)
Frame = +3
Query: 3 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEA---LKELSE 173
SDL P ++++GV +LL RTRVL ++A ++ A E + P DE + L +
Sbjct: 897 SDLKPDQVLKGVSMLLKRTRVLVLGDEAALENAALEPGMEEDDEGNPIDEKPTMVDPLMK 956
Query: 174 TAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLL 287
AQ NATLLFQ+H+R+ LA K ++ HRLT KAF WLL
Sbjct: 957 EAQENATLLFQIHMRSMLACKKLIQLHRLTFKAFLWLL 994
[3][TOP]
>UniRef100_Q9AXN1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Botryocladia
uvarioides RepID=Q9AXN1_9FLOR
Length = 1712
Score = 63.9 bits (154), Expect = 5e-09
Identities = 36/95 (37%), Positives = 57/95 (60%)
Frame = +3
Query: 3 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 182
SDL+P ++ +G+++LL RTRV+ +D + + + + +G + A ET Q
Sbjct: 898 SDLTPVQVWKGIKMLLKRTRVVEIGDDQDDEDVDDGVTDENGEMIDRKPVADPLTLET-Q 956
Query: 183 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLL 287
NAT++FQ+HVR+ LA K V+ HRL AF W+L
Sbjct: 957 ENATMIFQIHVRSMLACKQVMVRHRLDINAFLWIL 991
[4][TOP]
>UniRef100_Q9AXN0 DNA-directed RNA polymerase n=1 Tax=Glaucosphaera vacuolata
RepID=Q9AXN0_9RHOD
Length = 1746
Score = 62.8 bits (151), Expect = 1e-08
Identities = 41/108 (37%), Positives = 58/108 (53%), Gaps = 13/108 (12%)
Frame = +3
Query: 3 SDLSPSKIVRGVELLLHRTRVLT-------------SDEDAEVDAIAREMLPPDGSASGP 143
SDL+P I++GV++LL R V+ D+ AEVD
Sbjct: 973 SDLNPRDILKGVQILLSRCNVVALPPKSIKLLDEGDGDQVAEVDT--------------- 1017
Query: 144 QDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLL 287
+ ++L+ AQ NATLL+ +H+RA LASKV+L E+RL +KAF LL
Sbjct: 1018 -NSVSRQLAVEAQENATLLWSIHIRAFLASKVILKEYRLDKKAFMHLL 1064
[5][TOP]
>UniRef100_Q84KP6 DNA-directed RNA polymerase n=1 Tax=Cyanidioschyzon merolae
RepID=Q84KP6_CYAME
Length = 1819
Score = 62.8 bits (151), Expect = 1e-08
Identities = 40/95 (42%), Positives = 47/95 (49%)
Frame = +3
Query: 3 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 182
SDL P +I++GV +LL R V+ D+ ELS AQ
Sbjct: 993 SDLHPRQIIQGVRVLLQRCVVVPGDD---------------------------ELSREAQ 1025
Query: 183 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLL 287
NA LLF HVRA LA+K VL HRL KAF WLL
Sbjct: 1026 RNAVLLFAAHVRAELATKRVLQIHRLNSKAFAWLL 1060
[6][TOP]
>UniRef100_UPI00019270E9 PREDICTED: similar to DNA-directed RNA polymerase II subunit RPB1
isoform 2 n=1 Tax=Hydra magnipapillata
RepID=UPI00019270E9
Length = 2014
Score = 58.2 bits (139), Expect = 3e-07
Identities = 34/95 (35%), Positives = 51/95 (53%)
Frame = +3
Query: 3 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 182
+DLSP K++ ++ L R V+ ++ +LS+ AQ
Sbjct: 1002 TDLSPLKVINDIKDLTKRLLVVKGED---------------------------KLSKEAQ 1034
Query: 183 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLL 287
LNAT+LFQ+H+R++L SK V+ E RLT +AF WLL
Sbjct: 1035 LNATMLFQIHLRSTLCSKRVIEEFRLTSEAFDWLL 1069
[7][TOP]
>UniRef100_UPI00019270BB PREDICTED: similar to DNA-directed RNA polymerase II subunit RPB1
isoform 1 n=1 Tax=Hydra magnipapillata
RepID=UPI00019270BB
Length = 2041
Score = 58.2 bits (139), Expect = 3e-07
Identities = 34/95 (35%), Positives = 51/95 (53%)
Frame = +3
Query: 3 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 182
+DLSP K++ ++ L R V+ ++ +LS+ AQ
Sbjct: 1003 TDLSPLKVINDIKDLTKRLLVVKGED---------------------------KLSKEAQ 1035
Query: 183 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLL 287
LNAT+LFQ+H+R++L SK V+ E RLT +AF WLL
Sbjct: 1036 LNATMLFQIHLRSTLCSKRVIEEFRLTSEAFDWLL 1070
[8][TOP]
>UniRef100_C5Y387 DNA-directed RNA polymerase n=1 Tax=Sorghum bicolor
RepID=C5Y387_SORBI
Length = 1874
Score = 57.0 bits (136), Expect = 6e-07
Identities = 36/95 (37%), Positives = 50/95 (52%)
Frame = +3
Query: 3 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 182
SD+ P +IV ++ L R +V+ D DAI+ E AQ
Sbjct: 998 SDMHPIEIVEAIDKLQERLKVVPGD-----DAISIE----------------------AQ 1030
Query: 183 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLL 287
NATL F +H+RA+ ASK VL E+RLTR+AF W++
Sbjct: 1031 KNATLFFNIHLRATFASKRVLREYRLTREAFEWII 1065
[9][TOP]
>UniRef100_Q2PYS3 DNA-directed RNA polymerase (Fragment) n=1 Tax=Cladochytrium
replicatum RepID=Q2PYS3_9FUNG
Length = 981
Score = 56.6 bits (135), Expect = 8e-07
Identities = 36/95 (37%), Positives = 49/95 (51%)
Frame = +3
Query: 3 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 182
SDL P I++ V+ LL RT V+ + ELS AQ
Sbjct: 888 SDLHPRHIIKSVQELLERTVVIRGKD---------------------------ELSVEAQ 920
Query: 183 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLL 287
NATLLFQ+ VR++LA++ VL E RL R+AF W++
Sbjct: 921 ANATLLFQILVRSTLATRRVLEEFRLDRRAFDWII 955
[10][TOP]
>UniRef100_Q2PYR6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Coemansia reversa
RepID=Q2PYR6_9FUNG
Length = 1013
Score = 56.6 bits (135), Expect = 8e-07
Identities = 27/42 (64%), Positives = 34/42 (80%)
Frame = +3
Query: 162 ELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLL 287
+LS AQ NATLLFQ+H+RASLA+K V+ E LT++AF WLL
Sbjct: 946 QLSVEAQTNATLLFQIHLRASLATKRVIEEFHLTKEAFDWLL 987
[11][TOP]
>UniRef100_Q30BD9 DNA-directed RNA polymerase n=1 Tax=Glaucocystis nostochinearum
RepID=Q30BD9_9EUKA
Length = 1852
Score = 56.2 bits (134), Expect = 1e-06
Identities = 36/95 (37%), Positives = 48/95 (50%)
Frame = +3
Query: 3 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 182
SDL P I++GV LL + V+ ++ V+A Q
Sbjct: 989 SDLDPVDIIKGVNLLTKQLVVIPGEDPLSVEA---------------------------Q 1021
Query: 183 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLL 287
NAT+LFQ+ VR+ LASK VL+E+RLT AF WLL
Sbjct: 1022 ANATMLFQILVRSCLASKRVLTEYRLTSHAFEWLL 1056
[12][TOP]
>UniRef100_Q1ACV3 RNA polymerase II largest subunit (Fragment) n=1 Tax=Acer palmatum
RepID=Q1ACV3_ACEPM
Length = 240
Score = 55.1 bits (131), Expect = 2e-06
Identities = 33/95 (34%), Positives = 47/95 (49%)
Frame = +3
Query: 3 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 182
SD+ P ++V ++ L R +V+ D+ LS AQ
Sbjct: 150 SDMHPMEVVEAIDKLQERLKVVPGDD---------------------------ALSVEAQ 182
Query: 183 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLL 287
NATL F + +R++ ASK VL EHRLTR+AF WL+
Sbjct: 183 KNATLFFNILLRSTFASKRVLQEHRLTREAFEWLI 217
[13][TOP]
>UniRef100_Q2N108 DNA-directed RNA polymerase II largest subunit (Fragment) n=1
Tax=Aphrocallistes vastus RepID=Q2N108_9METZ
Length = 254
Score = 55.1 bits (131), Expect = 2e-06
Identities = 34/95 (35%), Positives = 49/95 (51%)
Frame = +3
Query: 3 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 182
SDL+P K++ GVE L + V+ ED+ +S+ AQ
Sbjct: 159 SDLNPLKVIEGVEELCKKL-VIVDGEDS--------------------------ISKEAQ 191
Query: 183 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLL 287
NATLL +H+R++LA K V+ EH L+ +AF WLL
Sbjct: 192 YNATLLINIHLRSTLACKRVMEEHHLSSQAFDWLL 226
[14][TOP]
>UniRef100_Q4P7Q0 DNA-directed RNA polymerase n=1 Tax=Ustilago maydis
RepID=Q4P7Q0_USTMA
Length = 1774
Score = 55.1 bits (131), Expect = 2e-06
Identities = 31/95 (32%), Positives = 53/95 (55%)
Frame = +3
Query: 3 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 182
+DLSP++++ G+ +L R V+ D D I+RE AQ
Sbjct: 991 TDLSPAEVIIGLRNVLDRLIVIRGD-----DPISRE----------------------AQ 1023
Query: 183 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLL 287
+NATLLF++H+R+ L SK+V+ +H + ++A+ W+L
Sbjct: 1024 MNATLLFKIHLRSYLCSKMVIEQHHINKEAWEWIL 1058
[15][TOP]
>UniRef100_Q1ACU5 RNA polymerase II largest subunit (Fragment) n=1 Tax=Dionaea
muscipula RepID=Q1ACU5_DIOMU
Length = 240
Score = 54.3 bits (129), Expect = 4e-06
Identities = 34/95 (35%), Positives = 48/95 (50%)
Frame = +3
Query: 3 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 182
SDL P +IV V+ L R RV+ D+ LS+ AQ
Sbjct: 150 SDLMPMEIVEAVDKLQERLRVVPGDD---------------------------HLSDEAQ 182
Query: 183 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLL 287
NATL F + +R++LA K VL E+RL+R+AF W++
Sbjct: 183 RNATLFFNILLRSTLACKRVLQEYRLSREAFEWVI 217
[16][TOP]
>UniRef100_Q71ET3 DNA-directed RNA polymerase (Fragment) n=1 Tax=Psilotum nudum
RepID=Q71ET3_PSINU
Length = 1013
Score = 53.9 bits (128), Expect = 5e-06
Identities = 32/95 (33%), Positives = 50/95 (52%)
Frame = +3
Query: 3 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 182
SD+ P +IV V+ L R +V+ ++ E+S+ AQ
Sbjct: 920 SDMHPMEIVEAVDKLQERLKVVPGED---------------------------EISKEAQ 952
Query: 183 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLL 287
NATL F + +R++LASK VL E+RLT++AF W++
Sbjct: 953 KNATLFFNILLRSTLASKRVLKEYRLTKEAFEWVI 987
[17][TOP]
>UniRef100_Q30BD8 DNA-directed RNA polymerase (Fragment) n=1 Tax=Cyanophora paradoxa
RepID=Q30BD8_CYAPA
Length = 1000
Score = 53.9 bits (128), Expect = 5e-06
Identities = 36/95 (37%), Positives = 48/95 (50%)
Frame = +3
Query: 3 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 182
SDL P I++GVELL + V+ ++ LS AQ
Sbjct: 900 SDLRPDIILQGVELLSTQLVVIAGEDT---------------------------LSREAQ 932
Query: 183 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLL 287
NAT LF +H+RA+LA+K VLSE+RL+ A WLL
Sbjct: 933 ENATRLFNIHLRATLATKRVLSEYRLSAAALEWLL 967
[18][TOP]
>UniRef100_Q1ACT8 RNA polymerase II largest subunit (Fragment) n=1 Tax=Kalanchoe
tomentosa RepID=Q1ACT8_9MAGN
Length = 240
Score = 53.1 bits (126), Expect = 9e-06
Identities = 31/95 (32%), Positives = 49/95 (51%)
Frame = +3
Query: 3 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 182
SD+ P +IV ++ L R +V+ ++ ++A Q
Sbjct: 150 SDMHPMEIVEAIDKLQERLKVVPGEDSLSIEA---------------------------Q 182
Query: 183 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLL 287
NATLLF + +R++ ASK VLSE+RLTR+AF W++
Sbjct: 183 KNATLLFNILLRSTFASKRVLSEYRLTREAFEWVV 217
[19][TOP]
>UniRef100_Q9U5F6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Eptatretus burgeri
RepID=Q9U5F6_EPTBU
Length = 595
Score = 53.1 bits (126), Expect = 9e-06
Identities = 31/95 (32%), Positives = 47/95 (49%)
Frame = +3
Query: 3 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 182
+DL+P ++V GV L + +++ D+ +S AQ
Sbjct: 501 TDLNPLRVVEGVNDLTQKLQIVKGDDP---------------------------ISRQAQ 533
Query: 183 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLL 287
NATLLF HVRA+L ++ + EHRL+ +AF WLL
Sbjct: 534 QNATLLFNCHVRATLCTRRLAEEHRLSSEAFEWLL 568
[20][TOP]
>UniRef100_Q9C428 DNA-directed RNA polymerase (Fragment) n=1 Tax=Monoblepharis
macrandra RepID=Q9C428_9FUNG
Length = 1603
Score = 53.1 bits (126), Expect = 9e-06
Identities = 37/95 (38%), Positives = 46/95 (48%)
Frame = +3
Query: 3 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 182
S+L P +IVR V LL R V+T ++ LS AQ
Sbjct: 925 SNLRPEEIVRDVNDLLSRCIVITGEDG---------------------------LSTMAQ 957
Query: 183 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLL 287
NATLLF + VR LA+K V +EHRL R AF WL+
Sbjct: 958 HNATLLFNILVRHLLATKRVYAEHRLNRNAFRWLI 992