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[1][TOP]
>UniRef100_Q86AQ5 DNA-directed RNA polymerase III subunit rpc1 n=1 Tax=Dictyostelium
discoideum RepID=RPC1_DICDI
Length = 1450
Score = 127 bits (320), Expect = 4e-28
Identities = 64/149 (42%), Positives = 99/149 (66%)
Frame = +1
Query: 106 YGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLP 285
Y DA + N +++ H+ + DDLNPL L LF+ ++ +D+ +++M V GRPERLIL Y+
Sbjct: 191 YDDAIKYNPEMKSHIKKAQDDLNPLVALNLFKKISYQDIEIMNMDPVIGRPERLILTYML 250
Query: 286 VPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVE 465
VPP+ IRP+V D +G+ EDDLTMKL+EI+H+NE + +++ + +M+ ++LQ
Sbjct: 251 VPPVSIRPSVPMDGGSGTNEDDLTMKLSEILHINEHIRSNVDRAEMSA-IMEDWDYLQAS 309
Query: 466 AARFMNSDATNLPPLASTAKPLRGISQRL 552
A ++NSD LP K +RG+SQRL
Sbjct: 310 CAIYINSDVPGLPLQMKPTKAVRGLSQRL 338
[2][TOP]
>UniRef100_C9SQ00 DNA-directed RNA polymerase III subunit RPC1 n=1 Tax=Verticillium
albo-atrum VaMs.102 RepID=C9SQ00_9PEZI
Length = 1456
Score = 124 bits (310), Expect = 6e-27
Identities = 65/170 (38%), Positives = 100/170 (58%)
Frame = +1
Query: 43 YKKPTKTELREQAKSAAMESAYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDV 222
Y K T + ++++ +AK+ N DL++HL + +DLNPLR L LF+ ++ D
Sbjct: 188 YNKSTSMKKVPPESKIVFDASFDEAKKQNPDLDKHLRKAMEDLNPLRVLNLFKTISPTDC 247
Query: 223 ALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAK 402
L+ + V GRPE I ++LP PP+CIRP+V D + STEDDLT KL +IV ++ +
Sbjct: 248 ELLGLDPVEGRPEMFIWQFLPAPPVCIRPSVAQDNA--STEDDLTTKLADIVWISGMIRL 305
Query: 403 SINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRL 552
++ G P +M+ E+LQ++ A ++NSD L K +RG QRL
Sbjct: 306 ALQKGSPVQTIMEQWEYLQLQIAMYVNSDVPGLQQ-PGFGKTVRGFCQRL 354
[3][TOP]
>UniRef100_A7EYX3 DNA-directed RNA polymerase n=1 Tax=Sclerotinia sclerotiorum 1980
UF-70 RepID=A7EYX3_SCLS1
Length = 1459
Score = 124 bits (310), Expect = 6e-27
Identities = 64/170 (37%), Positives = 100/170 (58%)
Frame = +1
Query: 43 YKKPTKTELREQAKSAAMESAYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDV 222
Y K T + A + ++ +AK+NN +LE+H+ +V +DL+PLR L LF+ +T D
Sbjct: 189 YNKSTAAKKVAPPGMAEYQKSFEEAKKNNTELEKHVKKVYEDLHPLRVLNLFKLITPSDC 248
Query: 223 ALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAK 402
L+ + GRPE + +++P PP+CIRP+V D GS EDDLT KL EIV+M+ +
Sbjct: 249 ELLGINPAEGRPEMFLWQFVPAPPICIRPSVAQD--GGSNEDDLTAKLAEIVNMSSLIRA 306
Query: 403 SINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRL 552
++ G +M+ ++LQ++ A ++NSD L K +RG QRL
Sbjct: 307 ALQKGQAVQTIMEQWDFLQLQIAMYVNSDVPGLQQ-PGFGKAIRGFCQRL 355
[4][TOP]
>UniRef100_Q1DVM7 DNA-directed RNA polymerase n=1 Tax=Coccidioides immitis
RepID=Q1DVM7_COCIM
Length = 1430
Score = 122 bits (306), Expect = 2e-26
Identities = 64/152 (42%), Positives = 95/152 (62%)
Frame = +1
Query: 97 ESAYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILR 276
+ ++ +AKR+N D+E+H +V DDLNPLR L LF ++ ED L+ + RPE + +
Sbjct: 211 DRSFEEAKRSNTDIEKHFKKVQDDLNPLRVLKLFRRISDEDCELLGLNPEEVRPEMFLWQ 270
Query: 277 YLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWL 456
Y+P PP+ IRP+V + STEDDLT KL +IV N L +IN G P +++ +++
Sbjct: 271 YIPAPPVSIRPSVGQE--GASTEDDLTAKLGDIVQSNINLKNAINKGAPVQTIIECWDYM 328
Query: 457 QVEAARFMNSDATNLPPLASTAKPLRGISQRL 552
Q++ A ++NSD L A KP+RGI QRL
Sbjct: 329 QLQIAVYINSDVPGLQK-ADFGKPIRGICQRL 359
[5][TOP]
>UniRef100_C5PCH6 DNA-directed RNA polymerase n=1 Tax=Coccidioides posadasii C735
delta SOWgp RepID=C5PCH6_COCP7
Length = 1444
Score = 122 bits (306), Expect = 2e-26
Identities = 64/152 (42%), Positives = 95/152 (62%)
Frame = +1
Query: 97 ESAYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILR 276
+ ++ +AKR+N D+E+H +V DDLNPLR L LF ++ ED L+ + RPE + +
Sbjct: 211 DRSFEEAKRSNTDIEKHFKKVQDDLNPLRVLKLFRRISDEDCELLGLNPEEVRPEMFLWQ 270
Query: 277 YLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWL 456
Y+P PP+ IRP+V + STEDDLT KL +IV N L +IN G P +++ +++
Sbjct: 271 YIPAPPVSIRPSVGQE--GASTEDDLTAKLGDIVQSNINLKNAINKGAPVQTIIECWDYM 328
Query: 457 QVEAARFMNSDATNLPPLASTAKPLRGISQRL 552
Q++ A ++NSD L A KP+RGI QRL
Sbjct: 329 QLQIAVYINSDVPGLQK-ADFGKPIRGICQRL 359
[6][TOP]
>UniRef100_C4JWU1 DNA-directed RNA polymerase n=1 Tax=Uncinocarpus reesii 1704
RepID=C4JWU1_UNCRE
Length = 1435
Score = 122 bits (306), Expect = 2e-26
Identities = 64/158 (40%), Positives = 96/158 (60%)
Frame = +1
Query: 79 AKSAAMESAYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRP 258
A + ++ +AKR+N D+E+H +V DDLNPLR L LF ++ ED L+ + RP
Sbjct: 205 ASKLVFDQSFEEAKRSNTDIEKHFKKVQDDLNPLRVLKLFRRISNEDCELLGLNPKEVRP 264
Query: 259 ERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLM 438
E + +++P PP+ IRP+V + STEDDLT KL +IV N L +IN G P ++
Sbjct: 265 EMFLWQFIPAPPVSIRPSVGQE--GASTEDDLTAKLGDIVQSNINLKNAINKGAPVQTII 322
Query: 439 DGXEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRL 552
+ +++Q++ A ++NSD L A KP+RGI QRL
Sbjct: 323 ECWDYMQLQIAVYINSDVPGLQK-ADFGKPIRGICQRL 359
[7][TOP]
>UniRef100_O94666 DNA-directed RNA polymerase III subunit rpc1 n=1
Tax=Schizosaccharomyces pombe RepID=RPC1_SCHPO
Length = 1405
Score = 122 bits (306), Expect = 2e-26
Identities = 61/150 (40%), Positives = 95/150 (63%)
Frame = +1
Query: 103 AYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYL 282
++ +A + +L+ HLS+ DDLNPL+ L LF+ +T D L+ M GRPE L+ RY+
Sbjct: 192 SFDEALKTIPELKMHLSKAHDDLNPLKVLNLFKQITPVDCELLGMDPEHGRPENLLWRYV 251
Query: 283 PVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQV 462
P PP+CIRP+V + +TEDDLT+K+TEI+ + + +++ G P LM+ E++Q+
Sbjct: 252 PAPPVCIRPSVAQE--GATTEDDLTVKITEIIWTSSLIRAALSKGTPISNLMEQWEFMQL 309
Query: 463 EAARFMNSDATNLPPLASTAKPLRGISQRL 552
A ++NS+ L P +KP+RG QRL
Sbjct: 310 SIAMYINSEMPGLRPSDMPSKPIRGFCQRL 339
[8][TOP]
>UniRef100_C1MN08 DNA-directed RNA polymerase n=1 Tax=Micromonas pusilla CCMP1545
RepID=C1MN08_9CHLO
Length = 1591
Score = 121 bits (303), Expect = 4e-26
Identities = 65/150 (43%), Positives = 94/150 (62%), Gaps = 1/150 (0%)
Frame = +1
Query: 106 YGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLP 285
+ +A + N L+++LSRV DDLNP+R +++F ++ D L+D + RPE LIL +LP
Sbjct: 215 FEEAVKFNDQLKQNLSRVQDDLNPIRVISIFRRISPMDCELLD---IADRPEHLILTHLP 271
Query: 286 VPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVE 465
VPP+CIRP+V D AGS EDD+TMKL +I+ +N L + + G LM+ ++LQV+
Sbjct: 272 VPPVCIRPSVEMDGVAGSNEDDITMKLIQIIEVNNVLRQGLEKGLAIANLMENWDFLQVQ 331
Query: 466 AARFMNSDATNLP-PLASTAKPLRGISQRL 552
A + NS+ L KPLRG QRL
Sbjct: 332 IAMYFNSELPGLSLQYQGPGKPLRGFVQRL 361
[9][TOP]
>UniRef100_B6K857 DNA-directed RNA polymerase n=1 Tax=Schizosaccharomyces japonicus
yFS275 RepID=B6K857_SCHJY
Length = 1406
Score = 120 bits (302), Expect = 5e-26
Identities = 65/159 (40%), Positives = 92/159 (57%)
Frame = +1
Query: 76 QAKSAAMESAYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGR 255
Q + ++ A + DL HL + DDLNPLR L LF+ +T D L+ M GR
Sbjct: 183 QEEGGEFRQSFDQALKAMPDLRPHLHKAHDDLNPLRVLNLFKQITPMDCELLGMDPEKGR 242
Query: 256 PERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLL 435
PE L+ +Y+P PP+ IRPTV + +TEDD+T+KLTEIV + + ++N G P L
Sbjct: 243 PENLLWQYMPAPPVTIRPTVAQE--GATTEDDITIKLTEIVWTSSLIRAALNKGTPINSL 300
Query: 436 MDGXEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRL 552
M+ E+LQ+ A ++NS+ L P +KP RG QRL
Sbjct: 301 MEQWEFLQLSVALYINSELPGLRPPDMPSKPTRGFCQRL 339
[10][TOP]
>UniRef100_B7PVV6 DNA-directed RNA polymerase n=1 Tax=Ixodes scapularis
RepID=B7PVV6_IXOSC
Length = 1394
Score = 119 bits (299), Expect = 1e-25
Identities = 66/174 (37%), Positives = 101/174 (58%), Gaps = 1/174 (0%)
Frame = +1
Query: 34 INLYKKPTKTELREQAKSAAMESAYGDAKRNNADLERHLSRVGDD-LNPLRTLALFEAMT 210
+ L + K + A A + +A+ N +L+ + +V D LNPL L LF +
Sbjct: 172 LKLVHERFKATKKNDAMLAEFLEDFDEARGYNPELDSVMGKVTSDILNPLVVLHLFRRIL 231
Query: 211 AEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNE 390
EDV L+ M GRPE LIL +PVPPLCIRP+V S+ AG+ EDD+T+KLTEI+ +N+
Sbjct: 232 DEDVPLLVMNPKCGRPEDLILTRIPVPPLCIRPSVVSELKAGTNEDDVTVKLTEIIFLND 291
Query: 391 ALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRL 552
+ + G ++M+ ++LQ++ A ++NS+ + +P KP RG QRL
Sbjct: 292 VIQRHRASGAKMQMIMEDWDFLQLQCALYVNSETSGIPLNMQPKKPTRGFVQRL 345
[11][TOP]
>UniRef100_A5DM42 DNA-directed RNA polymerase n=1 Tax=Pichia guilliermondii
RepID=A5DM42_PICGU
Length = 1379
Score = 119 bits (299), Expect = 1e-25
Identities = 71/161 (44%), Positives = 97/161 (60%), Gaps = 7/161 (4%)
Frame = +1
Query: 91 AMESAYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAV-GGRPERL 267
A + + + N ++E+ RV DDLNPL+ L LF+ +T +D L + A GGRPE
Sbjct: 126 AWDQEFDEVFARNPEVEKFAKRVHDDLNPLKVLNLFKQITPQDCELFGIDASRGGRPEMY 185
Query: 268 ILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGX 447
I RYLP PP+CIRP+V D A S EDD+T+KLTEIV + + I G LM+
Sbjct: 186 IWRYLPAPPVCIRPSVMMD--AQSNEDDITVKLTEIVWTSSLIKAGIEKGISINNLMEQW 243
Query: 448 EWLQVEAARFMNSDATN---LPPL---ASTAKPLRGISQRL 552
++LQ+ A ++NSDA N LP + A +AKP+RG QRL
Sbjct: 244 DYLQLSVAMYINSDAANPALLPSMSGGAKSAKPIRGFCQRL 284
[12][TOP]
>UniRef100_UPI000023CDC4 hypothetical protein FG09860.1 n=1 Tax=Gibberella zeae PH-1
RepID=UPI000023CDC4
Length = 2443
Score = 119 bits (298), Expect = 2e-25
Identities = 62/170 (36%), Positives = 96/170 (56%)
Frame = +1
Query: 43 YKKPTKTELREQAKSAAMESAYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDV 222
Y K T + ++++ +AKR N +L++HL + +DLNPLR L LF+ ++ D
Sbjct: 1183 YNKSTSIKKTPPESKIKFDNSFNEAKRENPELDKHLRKAMEDLNPLRVLNLFKMISPTDC 1242
Query: 223 ALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAK 402
L+ + GRPE I ++LP PP+CIRP+V D + S EDD+T KL +IV ++ +
Sbjct: 1243 ELLGLDPAEGRPEMFIWQFLPAPPVCIRPSVAQDNA--SNEDDITTKLADIVWVSGMIRS 1300
Query: 403 SINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRL 552
++ G P +M+ E+LQ + A ++NSD L K RG QRL
Sbjct: 1301 ALQKGSPVQTIMEQWEYLQTQIAMYVNSDVPGLQQ-PGFGKTTRGFCQRL 1349
[13][TOP]
>UniRef100_A8IFE0 DNA-directed RNA polymerase n=1 Tax=Chlamydomonas reinhardtii
RepID=A8IFE0_CHLRE
Length = 1167
Score = 119 bits (298), Expect = 2e-25
Identities = 67/148 (45%), Positives = 94/148 (63%), Gaps = 1/148 (0%)
Frame = +1
Query: 112 DAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVP 291
DA + N L+ HL R+ DDL+PLR ALFEA+ ED+ L+D++ GRPE L++ ++ VP
Sbjct: 461 DAMKYNDQLKGHLHRLADDLHPLRVRALFEAIPDEDLDLLDIQ---GRPEDLVVTHVAVP 517
Query: 292 PLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAA 471
P+ IRP+V D S EDD+TMKL +I+ +N L + + G P LM+ ++LQV+AA
Sbjct: 518 PVAIRPSVEMD--GASNEDDITMKLMQIIEVNNVLRQGLEKGLPISNLMENWDFLQVQAA 575
Query: 472 RFMNSDATNLP-PLASTAKPLRGISQRL 552
+NSD LP +PLRG QRL
Sbjct: 576 MLINSDLPGLPAQFQMPGRPLRGFVQRL 603
[14][TOP]
>UniRef100_A7TNS6 DNA-directed RNA polymerase n=1 Tax=Vanderwaltozyma polyspora DSM
70294 RepID=A7TNS6_VANPO
Length = 1460
Score = 119 bits (298), Expect = 2e-25
Identities = 70/151 (46%), Positives = 91/151 (60%), Gaps = 8/151 (5%)
Frame = +1
Query: 124 NNADLERHLSRVGDDLNPLRTLALFEAMTAEDVAL--IDMRAVGGRPERLILRYLPVPPL 297
NN +LER R DDLNPL+TL LF+ + ED L ID GRPE I RYLP PP+
Sbjct: 207 NNPELERFAKRSMDDLNPLKTLNLFKQIRPEDCELLGIDSTVKAGRPETYIWRYLPAPPV 266
Query: 298 CIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARF 477
CIRP+V S S EDDLT+KLTEIV + + + G +M+ ++LQ+ A +
Sbjct: 267 CIRPSVMMQDSPASNEDDLTVKLTEIVWTSSLIKAGLEKGISINNMMEHWDYLQLSVAMY 326
Query: 478 MNSDATN--LPPLAST----AKPLRGISQRL 552
+NSD+ N + P AS+ AKP+RG QRL
Sbjct: 327 INSDSVNPSMMPGASSGGAKAKPIRGFCQRL 357
[15][TOP]
>UniRef100_B3RW43 DNA-directed RNA polymerase n=1 Tax=Trichoplax adhaerens
RepID=B3RW43_TRIAD
Length = 941
Score = 119 bits (297), Expect = 2e-25
Identities = 65/148 (43%), Positives = 93/148 (62%), Gaps = 1/148 (0%)
Frame = +1
Query: 112 DAKRNNADLERHL-SRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPV 288
DA +N DLE + S+ + LNPL L LF M+ ED L+ M+ GRPE LI+ L V
Sbjct: 199 DAVESNKDLENFVASKSQEILNPLLVLKLFSGMSDEDCLLVGMKPNNGRPEDLIIERLLV 258
Query: 289 PPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEA 468
PPLCIRP+V +D GS EDDLTMKLTEI+ +++ + +S G +LM+ + LQ+
Sbjct: 259 PPLCIRPSVMTDSQMGSNEDDLTMKLTEIILISDYINRSRQNGAKIQILMELWDNLQIHV 318
Query: 469 ARFMNSDATNLPPLASTAKPLRGISQRL 552
+ ++NS+ + LP + +P+RG QRL
Sbjct: 319 SLYINSETSGLPYGSQPNRPIRGFCQRL 346
[16][TOP]
>UniRef100_A6SCV1 DNA-directed RNA polymerase n=1 Tax=Botryotinia fuckeliana B05.10
RepID=A6SCV1_BOTFB
Length = 1468
Score = 119 bits (297), Expect = 2e-25
Identities = 63/170 (37%), Positives = 99/170 (58%)
Frame = +1
Query: 43 YKKPTKTELREQAKSAAMESAYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDV 222
Y K T + A + ++ +AK++N +LE+H+ +V +DL+PLR L LF+ +T D
Sbjct: 186 YNKSTAAKKVVPPGMAEYQKSFEEAKKHNTELEKHVKKVYEDLHPLRVLNLFKLITPSDC 245
Query: 223 ALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAK 402
L+ + GRPE + +++P PP+CIRP+V D GS EDD+T KL EIV M L
Sbjct: 246 ELLGINPAEGRPEMFLWQFVPAPPICIRPSVQQD--GGSNEDDITTKLAEIVSMASLLRA 303
Query: 403 SINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRL 552
+++ G +M+ ++LQ++ A ++NSD L K +RG QRL
Sbjct: 304 ALHKGQAVQTIMEQWDFLQLQIAMYVNSDVPGLQQ-PGFGKAIRGFCQRL 352
[17][TOP]
>UniRef100_Q6FKG9 DNA-directed RNA polymerase n=1 Tax=Candida glabrata
RepID=Q6FKG9_CANGA
Length = 1459
Score = 118 bits (296), Expect = 3e-25
Identities = 67/151 (44%), Positives = 94/151 (62%), Gaps = 8/151 (5%)
Frame = +1
Query: 124 NNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVG--GRPERLILRYLPVPPL 297
+N +LER++ R DDLNPL+TL LF+ + +ED L+ + A GRPE I RY+P PP+
Sbjct: 207 HNPELERYVKRATDDLNPLKTLNLFKQIASEDCELLGIDATNKAGRPETYIWRYIPAPPV 266
Query: 298 CIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARF 477
CIRP+V S S EDDLT+KLTEIV + + I G +M+ ++LQ+ A +
Sbjct: 267 CIRPSVMMQDSPASNEDDLTVKLTEIVWTSSLIKAGIEKGISINNMMEHWDYLQMTVAMY 326
Query: 478 MNSDATN--LPPLAST----AKPLRGISQRL 552
+NSD+ N + P +ST KP+RG QRL
Sbjct: 327 INSDSINPAMLPGSSTGGGKVKPIRGFCQRL 357
[18][TOP]
>UniRef100_Q6CMC7 DNA-directed RNA polymerase n=1 Tax=Kluyveromyces lactis
RepID=Q6CMC7_KLULA
Length = 1457
Score = 118 bits (296), Expect = 3e-25
Identities = 71/161 (44%), Positives = 96/161 (59%), Gaps = 9/161 (5%)
Frame = +1
Query: 97 ESAYGDAKR---NNADLERHLSRVGDDLNPLRTLALFEAMTAEDVAL--IDMRAVGGRPE 261
E GD K+ NN +LER++ R DDLNPL+ L LF+ + D L ID + GRPE
Sbjct: 195 EQWIGDWKQVLENNPELERYVKRCMDDLNPLKVLNLFKQIKPNDCELLGIDSTSKSGRPE 254
Query: 262 RLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMD 441
I RYLP PP+CIRP+V S S EDDLT+KLTEIV + + + G +M+
Sbjct: 255 TYIWRYLPAPPVCIRPSVMMQDSPASNEDDLTVKLTEIVWTSSLIKAGLEKGISINNMME 314
Query: 442 GXEWLQVEAARFMNSDATN---LPPLAST-AKPLRGISQRL 552
++LQ+ A ++NSD+ N LP + T +KP+RG QRL
Sbjct: 315 QWDYLQLAVAMYINSDSVNPSMLPGSSGTKSKPIRGFCQRL 355
[19][TOP]
>UniRef100_C7YT68 Putative uncharacterized protein n=1 Tax=Nectria haematococca mpVI
77-13-4 RepID=C7YT68_NECH7
Length = 1449
Score = 118 bits (296), Expect = 3e-25
Identities = 62/172 (36%), Positives = 97/172 (56%)
Frame = +1
Query: 37 NLYKKPTKTELREQAKSAAMESAYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAE 216
+ Y K T + ++++ +AKR N +L++HL + +DLNPLR L LF+ ++
Sbjct: 188 SFYNKSTSVKKVPPESKIKFDNSFTEAKRENPELDKHLRKAMEDLNPLRVLNLFKMISPT 247
Query: 217 DVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEAL 396
D L+ + GRPE I ++LP PP+CIRP+V D + S EDD+T KL +IV ++ +
Sbjct: 248 DCELLGLDPAEGRPEMFIWQFLPAPPVCIRPSVAQDNA--SNEDDITTKLADIVWVSGMI 305
Query: 397 AKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRL 552
++ G P +M+ E+LQ + A ++NSD L K RG QRL
Sbjct: 306 RSALQKGSPVQTIMEQWEYLQTQIAMYVNSDVPGLQQ-PGFGKATRGFCQRL 356
[20][TOP]
>UniRef100_C1GGI7 DNA-directed RNA polymerase n=1 Tax=Paracoccidioides brasiliensis
Pb18 RepID=C1GGI7_PARBD
Length = 1458
Score = 118 bits (296), Expect = 3e-25
Identities = 59/152 (38%), Positives = 94/152 (61%)
Frame = +1
Query: 97 ESAYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILR 276
+ ++ +AK++N ++E+H + DDL+PLR L LF ++ ED L+ + RPE + +
Sbjct: 211 DRSFEEAKKSNPEIEKHFKKAHDDLHPLRVLKLFRRISNEDCELLGLNPAEARPEVFLWQ 270
Query: 277 YLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWL 456
Y+P PP+CIRP+V + A STEDDLT KL +I+ N L ++N G P +++ + +
Sbjct: 271 YIPAPPVCIRPSVGQE--AASTEDDLTAKLGDIIQSNMNLKNALNKGAPVQTIIECWDHM 328
Query: 457 QVEAARFMNSDATNLPPLASTAKPLRGISQRL 552
Q++ A ++NSD L A KP+RG QRL
Sbjct: 329 QLQLAVYINSDVPGLQK-ADFGKPIRGFCQRL 359
[21][TOP]
>UniRef100_C4R7G6 DNA-directed RNA polymerase n=1 Tax=Pichia pastoris GS115
RepID=C4R7G6_PICPG
Length = 1460
Score = 118 bits (295), Expect = 3e-25
Identities = 67/152 (44%), Positives = 90/152 (59%), Gaps = 9/152 (5%)
Frame = +1
Query: 124 NNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAV-GGRPERLILRYLPVPPLC 300
NN DLE+ L R DDLNPL+ L LF+ + D L+ + GGRPE + RY+P PP+C
Sbjct: 207 NNPDLEKFLKRAYDDLNPLKVLNLFKQVDPSDCELLGIDTTRGGRPEMYLWRYVPAPPVC 266
Query: 301 IRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFM 480
IRP+V S S EDDLT+KLTEIV ++ + I G L++ ++LQ+ A ++
Sbjct: 267 IRPSVLMSDSNTSNEDDLTVKLTEIVWISSLIRAGIEKGISINNLIEQWDYLQLSVAMYI 326
Query: 481 NSDATNLPPLASTA--------KPLRGISQRL 552
NSDA N+ L S A KP+RG QRL
Sbjct: 327 NSDAGNMSMLPSAAGSAGSKSSKPIRGFCQRL 358
[22][TOP]
>UniRef100_UPI000155D900 PREDICTED: polymerase (RNA) III (DNA directed) polypeptide A,
155kDa n=1 Tax=Equus caballus RepID=UPI000155D900
Length = 1390
Score = 117 bits (294), Expect = 4e-25
Identities = 63/150 (42%), Positives = 94/150 (62%)
Frame = +1
Query: 103 AYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYL 282
++ A +N ++E L R ++LNPL L LF+ + AEDV L+ M G+P LIL L
Sbjct: 196 SFETAIEHNKEVEPLLGRAQENLNPLVVLNLFKRIPAEDVPLLLMNPEAGKPSDLILTRL 255
Query: 283 PVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQV 462
VPPLCIRP+V SD +G+ EDDLTMKLTEI+ +N+ + K G ++M+ ++LQ+
Sbjct: 256 LVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGAKTQMIMEDWDFLQL 315
Query: 463 EAARFMNSDATNLPPLASTAKPLRGISQRL 552
+ A ++NS+ + +P + K RG QRL
Sbjct: 316 QCALYINSELSGIPLNMAPKKWTRGFVQRL 345
[23][TOP]
>UniRef100_UPI0000DA3EBF PREDICTED: similar to polymerase (RNA) III (DNA directed)
polypeptide A, 155kDa n=1 Tax=Rattus norvegicus
RepID=UPI0000DA3EBF
Length = 1390
Score = 117 bits (294), Expect = 4e-25
Identities = 63/150 (42%), Positives = 94/150 (62%)
Frame = +1
Query: 103 AYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYL 282
++ A +N ++E L R ++LNPL L LF+ + AEDV L+ M G+P LIL L
Sbjct: 196 SFETAIEHNKEVEPLLGRAQENLNPLVVLNLFKRIPAEDVPLLLMNPEAGKPSDLILTRL 255
Query: 283 PVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQV 462
VPPLCIRP+V SD +G+ EDDLTMKLTEI+ +N+ + K G ++M+ ++LQ+
Sbjct: 256 LVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGAKTQMIMEDWDFLQL 315
Query: 463 EAARFMNSDATNLPPLASTAKPLRGISQRL 552
+ A ++NS+ + +P + K RG QRL
Sbjct: 316 QCALYINSELSGIPLNMAPKKWTRGFVQRL 345
[24][TOP]
>UniRef100_UPI0000DA3DE9 PREDICTED: similar to polymerase (RNA) III (DNA directed)
polypeptide A, 155kDa n=2 Tax=Rattus norvegicus
RepID=UPI0000DA3DE9
Length = 1362
Score = 117 bits (294), Expect = 4e-25
Identities = 63/150 (42%), Positives = 94/150 (62%)
Frame = +1
Query: 103 AYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYL 282
++ A +N ++E L R ++LNPL L LF+ + AEDV L+ M G+P LIL L
Sbjct: 196 SFETAIEHNKEVEPLLGRAQENLNPLVVLNLFKRIPAEDVPLLLMNPEAGKPSDLILTRL 255
Query: 283 PVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQV 462
VPPLCIRP+V SD +G+ EDDLTMKLTEI+ +N+ + K G ++M+ ++LQ+
Sbjct: 256 LVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGAKTQMIMEDWDFLQL 315
Query: 463 EAARFMNSDATNLPPLASTAKPLRGISQRL 552
+ A ++NS+ + +P + K RG QRL
Sbjct: 316 QCALYINSELSGIPLNMAPKKWTRGFVQRL 345
[25][TOP]
>UniRef100_UPI00004BFD05 PREDICTED: similar to polymerase (RNA) III (DNA directed)
polypeptide A, 155kDa n=1 Tax=Canis lupus familiaris
RepID=UPI00004BFD05
Length = 1390
Score = 117 bits (294), Expect = 4e-25
Identities = 63/150 (42%), Positives = 94/150 (62%)
Frame = +1
Query: 103 AYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYL 282
++ A +N ++E L R ++LNPL L LF+ + AEDV L+ M G+P LIL L
Sbjct: 196 SFETAIEHNKEVEPLLGRAQENLNPLVVLNLFKRIPAEDVPLLLMNPEAGKPSDLILTRL 255
Query: 283 PVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQV 462
VPPLCIRP+V SD +G+ EDDLTMKLTEI+ +N+ + K G ++M+ ++LQ+
Sbjct: 256 LVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGAKTQMIMEDWDFLQL 315
Query: 463 EAARFMNSDATNLPPLASTAKPLRGISQRL 552
+ A ++NS+ + +P + K RG QRL
Sbjct: 316 QCALYINSELSGIPLNMAPKKWTRGFVQRL 345
[26][TOP]
>UniRef100_UPI0000EB3E23 DNA-directed RNA polymerase III subunit RPC1 (EC 2.7.7.6) (RNA
polymerase III subunit C1) (DNA-directed RNA polymerase
III subunit A) (DNA-directed RNA polymerase III largest
subunit) (RPC155) (C160). n=1 Tax=Canis lupus familiaris
RepID=UPI0000EB3E23
Length = 1393
Score = 117 bits (294), Expect = 4e-25
Identities = 63/150 (42%), Positives = 94/150 (62%)
Frame = +1
Query: 103 AYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYL 282
++ A +N ++E L R ++LNPL L LF+ + AEDV L+ M G+P LIL L
Sbjct: 196 SFETAIEHNKEVEPLLGRAQENLNPLVVLNLFKRIPAEDVPLLLMNPEAGKPSDLILTRL 255
Query: 283 PVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQV 462
VPPLCIRP+V SD +G+ EDDLTMKLTEI+ +N+ + K G ++M+ ++LQ+
Sbjct: 256 LVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGAKTQMIMEDWDFLQL 315
Query: 463 EAARFMNSDATNLPPLASTAKPLRGISQRL 552
+ A ++NS+ + +P + K RG QRL
Sbjct: 316 QCALYINSELSGIPLNMAPKKWTRGFVQRL 345
[27][TOP]
>UniRef100_Q7TSI4 DNA-directed RNA polymerase n=1 Tax=Mus musculus RepID=Q7TSI4_MOUSE
Length = 649
Score = 117 bits (294), Expect = 4e-25
Identities = 63/150 (42%), Positives = 94/150 (62%)
Frame = +1
Query: 103 AYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYL 282
++ A +N ++E L R ++LNPL L LF+ + AEDV L+ M G+P LIL L
Sbjct: 196 SFETAIEHNKEVEPLLGRAQENLNPLVVLNLFKRIPAEDVPLLLMNPESGKPSDLILTRL 255
Query: 283 PVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQV 462
VPPLCIRP+V SD +G+ EDDLTMKLTEI+ +N+ + K G ++M+ ++LQ+
Sbjct: 256 LVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGAKTQMIMEDWDFLQL 315
Query: 463 EAARFMNSDATNLPPLASTAKPLRGISQRL 552
+ A ++NS+ + +P + K RG QRL
Sbjct: 316 QCALYINSELSGIPLNMAPKKWTRGFVQRL 345
[28][TOP]
>UniRef100_B2RXC6 DNA-directed RNA polymerase n=1 Tax=Mus musculus RepID=B2RXC6_MOUSE
Length = 1390
Score = 117 bits (294), Expect = 4e-25
Identities = 63/150 (42%), Positives = 94/150 (62%)
Frame = +1
Query: 103 AYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYL 282
++ A +N ++E L R ++LNPL L LF+ + AEDV L+ M G+P LIL L
Sbjct: 196 SFETAIEHNKEVEPLLGRAQENLNPLVVLNLFKRIPAEDVPLLLMNPESGKPSDLILTRL 255
Query: 283 PVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQV 462
VPPLCIRP+V SD +G+ EDDLTMKLTEI+ +N+ + K G ++M+ ++LQ+
Sbjct: 256 LVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGAKTQMIMEDWDFLQL 315
Query: 463 EAARFMNSDATNLPPLASTAKPLRGISQRL 552
+ A ++NS+ + +P + K RG QRL
Sbjct: 316 QCALYINSELSGIPLNMAPKKWTRGFVQRL 345
[29][TOP]
>UniRef100_B7Z6H4 DNA-directed RNA polymerase n=1 Tax=Homo sapiens RepID=B7Z6H4_HUMAN
Length = 1369
Score = 117 bits (294), Expect = 4e-25
Identities = 63/150 (42%), Positives = 94/150 (62%)
Frame = +1
Query: 103 AYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYL 282
++ A +N ++E L R ++LNPL L LF+ + AEDV L+ M G+P LIL L
Sbjct: 196 SFETAIEHNKEVEPLLGRAQENLNPLVVLNLFKRIPAEDVPLLLMNPEAGKPSDLILTRL 255
Query: 283 PVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQV 462
VPPLCIRP+V SD +G+ EDDLTMKLTEI+ +N+ + K G ++M+ ++LQ+
Sbjct: 256 LVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGAKTQMIMEDWDFLQL 315
Query: 463 EAARFMNSDATNLPPLASTAKPLRGISQRL 552
+ A ++NS+ + +P + K RG QRL
Sbjct: 316 QCALYINSELSGIPLNMAPKKWTRGFVQRL 345
[30][TOP]
>UniRef100_O14802 DNA-directed RNA polymerase III subunit RPC1 n=1 Tax=Homo sapiens
RepID=RPC1_HUMAN
Length = 1390
Score = 117 bits (294), Expect = 4e-25
Identities = 63/150 (42%), Positives = 94/150 (62%)
Frame = +1
Query: 103 AYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYL 282
++ A +N ++E L R ++LNPL L LF+ + AEDV L+ M G+P LIL L
Sbjct: 196 SFETAIEHNKEVEPLLGRAQENLNPLVVLNLFKRIPAEDVPLLLMNPEAGKPSDLILTRL 255
Query: 283 PVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQV 462
VPPLCIRP+V SD +G+ EDDLTMKLTEI+ +N+ + K G ++M+ ++LQ+
Sbjct: 256 LVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGAKTQMIMEDWDFLQL 315
Query: 463 EAARFMNSDATNLPPLASTAKPLRGISQRL 552
+ A ++NS+ + +P + K RG QRL
Sbjct: 316 QCALYINSELSGIPLNMAPKKWTRGFVQRL 345
[31][TOP]
>UniRef100_UPI00019259E0 PREDICTED: similar to predicted protein, partial n=1 Tax=Hydra
magnipapillata RepID=UPI00019259E0
Length = 534
Score = 117 bits (293), Expect = 6e-25
Identities = 61/171 (35%), Positives = 100/171 (58%)
Frame = +1
Query: 40 LYKKPTKTELREQAKSAAMESAYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAED 219
L++K T + ++++ +A N +L+ S++ LNPL+ +F+ +T ED
Sbjct: 175 LHEKYKTTRKVDDGIITDFKNSFNEAIVYNKELDGITSKMNLVLNPLKVFHIFQNITEED 234
Query: 220 VALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALA 399
L+ M GRPE LI+ +PVPP CIRP+V S+ AGS EDDLTMKLTE++ +N+ +
Sbjct: 235 CYLLGMVPASGRPEDLIITRVPVPPACIRPSVISELQAGSNEDDLTMKLTEMIFLNDVIR 294
Query: 400 KSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRL 552
K + G ++M+ ++LQ++ A ++N + + +P K RG QRL
Sbjct: 295 KHRSTGAKVQIIMEDWDFLQLQCALYINGEMSGIPMNMQPKKATRGFVQRL 345
[32][TOP]
>UniRef100_UPI00017EFF90 PREDICTED: similar to polymerase (RNA) III (DNA directed)
polypeptide A, 155kDa n=1 Tax=Sus scrofa
RepID=UPI00017EFF90
Length = 1390
Score = 117 bits (293), Expect = 6e-25
Identities = 62/150 (41%), Positives = 94/150 (62%)
Frame = +1
Query: 103 AYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYL 282
++ A +N ++E L R ++LNPL L LF+ + AED+ L+ M G+P LIL L
Sbjct: 196 SFETAIEHNKEVEPLLGRAQENLNPLVVLNLFKRIPAEDIPLLLMNPEAGKPSDLILTRL 255
Query: 283 PVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQV 462
VPPLCIRP+V SD +G+ EDDLTMKLTEI+ +N+ + K G ++M+ ++LQ+
Sbjct: 256 LVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGAKTQMIMEDWDFLQL 315
Query: 463 EAARFMNSDATNLPPLASTAKPLRGISQRL 552
+ A ++NS+ + +P + K RG QRL
Sbjct: 316 QCALYINSELSGIPLNMAPKKWTRGFVQRL 345
[33][TOP]
>UniRef100_UPI000151B46E DNA-directed RNA polymerase III largest subunit n=1 Tax=Pichia
guilliermondii ATCC 6260 RepID=UPI000151B46E
Length = 1379
Score = 117 bits (293), Expect = 6e-25
Identities = 70/161 (43%), Positives = 96/161 (59%), Gaps = 7/161 (4%)
Frame = +1
Query: 91 AMESAYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAV-GGRPERL 267
A + + + N ++E+ RV DDLNPL+ L LF+ +T +D L + A GGRPE
Sbjct: 126 AWDQEFDEVFARNPEVEKFAKRVHDDLNPLKVLNLFKQITPQDCELFGIDASRGGRPEMY 185
Query: 268 ILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGX 447
I RYLP PP+CIRP+V D A EDD+T+KLTEIV + + I G LM+
Sbjct: 186 IWRYLPAPPVCIRPSVMMD--AQLNEDDITVKLTEIVWTSSLIKAGIEKGISINNLMEQW 243
Query: 448 EWLQVEAARFMNSDATN---LPPL---ASTAKPLRGISQRL 552
++LQ+ A ++NSDA N LP + A +AKP+RG QRL
Sbjct: 244 DYLQLSVAMYINSDAANPALLPSMSGGAKSAKPIRGFCQRL 284
[34][TOP]
>UniRef100_UPI00003AE23E polymerase (RNA) III (DNA directed) polypeptide A, 155kDa n=1
Tax=Gallus gallus RepID=UPI00003AE23E
Length = 1390
Score = 117 bits (293), Expect = 6e-25
Identities = 62/150 (41%), Positives = 94/150 (62%)
Frame = +1
Query: 103 AYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYL 282
++ A +N ++E L R ++LNPL L LF+ + AED+ L+ M G+P LIL L
Sbjct: 196 SFETAIEHNKEVEPLLGRAQENLNPLVVLNLFKRIPAEDIPLLLMNPEAGKPSDLILTRL 255
Query: 283 PVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQV 462
VPPLCIRP+V SD +G+ EDDLTMKLTEI+ +N+ + K G ++M+ ++LQ+
Sbjct: 256 LVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGAKTQMIMEDWDFLQL 315
Query: 463 EAARFMNSDATNLPPLASTAKPLRGISQRL 552
+ A ++NS+ + +P + K RG QRL
Sbjct: 316 QCALYINSELSGIPLNMAPKKWTRGFVQRL 345
[35][TOP]
>UniRef100_C5DJG5 DNA-directed RNA polymerase n=1 Tax=Lachancea thermotolerans CBS
6340 RepID=C5DJG5_LACTC
Length = 1460
Score = 117 bits (293), Expect = 6e-25
Identities = 67/150 (44%), Positives = 91/150 (60%), Gaps = 7/150 (4%)
Frame = +1
Query: 124 NNADLERHLSRVGDDLNPLRTLALFEAMTAEDVAL--IDMRAVGGRPERLILRYLPVPPL 297
+N +LER++ + DDLNPL+TL LF+ + ED L ID GRPE I RYLP PP+
Sbjct: 207 HNPELERYVKKCMDDLNPLKTLNLFKQVAPEDCELLGIDSTVKSGRPETYIWRYLPAPPV 266
Query: 298 CIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARF 477
CIRP+V S S EDDLT+KLTEIV + + + G +M+ ++LQ+ A +
Sbjct: 267 CIRPSVMMQDSPASNEDDLTVKLTEIVWTSSLIKAGLEKGISINNMMEQWDYLQLAVAMY 326
Query: 478 MNSDATN--LPPLAST---AKPLRGISQRL 552
+NSD+ N + P ST KP+RG QRL
Sbjct: 327 INSDSVNPAMMPGGSTGGKTKPIRGFCQRL 356
[36][TOP]
>UniRef100_Q5ZL98 DNA-directed RNA polymerase III subunit RPC1 n=1 Tax=Gallus gallus
RepID=RPC1_CHICK
Length = 1390
Score = 117 bits (293), Expect = 6e-25
Identities = 62/150 (41%), Positives = 94/150 (62%)
Frame = +1
Query: 103 AYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYL 282
++ A +N ++E L R ++LNPL L LF+ + AED+ L+ M G+P LIL L
Sbjct: 196 SFETAIEHNKEVEPLLGRAQENLNPLVVLNLFKRIPAEDIPLLLMNPEAGKPSDLILTRL 255
Query: 283 PVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQV 462
VPPLCIRP+V SD +G+ EDDLTMKLTEI+ +N+ + K G ++M+ ++LQ+
Sbjct: 256 LVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGAKTQMIMEDWDFLQL 315
Query: 463 EAARFMNSDATNLPPLASTAKPLRGISQRL 552
+ A ++NS+ + +P + K RG QRL
Sbjct: 316 QCALYINSELSGIPLNMAPKKWTRGFVQRL 345
[37][TOP]
>UniRef100_UPI0001923A0F PREDICTED: similar to predicted protein, partial n=1 Tax=Hydra
magnipapillata RepID=UPI0001923A0F
Length = 391
Score = 117 bits (292), Expect = 7e-25
Identities = 61/171 (35%), Positives = 100/171 (58%)
Frame = +1
Query: 40 LYKKPTKTELREQAKSAAMESAYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAED 219
L++K T + ++++ +A N +L+ S++ LNPL+ +F+ +T ED
Sbjct: 121 LHEKYKTTRKVDDGIITDFKNSFNEAIVYNKELDGITSKMNLVLNPLKVFHIFQNITDED 180
Query: 220 VALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALA 399
L+ M GRPE LI+ +PVPP CIRP+V S+ AGS EDDLTMKLTE++ +N+ +
Sbjct: 181 CYLLGMVPASGRPEDLIITRVPVPPACIRPSVISELQAGSNEDDLTMKLTEMIFLNDVIR 240
Query: 400 KSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRL 552
K + G ++M+ ++LQ++ A ++N + + +P K RG QRL
Sbjct: 241 KHRSTGAKVQIIMEDWDFLQLQCALYINGEMSGIPMNMQPKKATRGFVQRL 291
[38][TOP]
>UniRef100_C1E5P6 DNA-directed RNA polymerase n=1 Tax=Micromonas sp. RCC299
RepID=C1E5P6_9CHLO
Length = 1479
Score = 117 bits (292), Expect = 7e-25
Identities = 72/185 (38%), Positives = 104/185 (56%), Gaps = 1/185 (0%)
Frame = +1
Query: 1 GAGGGRGAARSINLYKKPTKTELREQAKSAAMESAYGDAKRNNADLERHLSRVGDDLNPL 180
GA GA+ I K EL E A + +A ++N L+ +L+RV DDLNP+
Sbjct: 185 GAVKRTGASLKIVHEKYSKNPELME-----AYVKEFEEAVKHNDQLKANLARVQDDLNPI 239
Query: 181 RTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTM 360
R ++ ++ D L+D V RPE LIL +LPVPP+CIRP+V + AGS EDD+TM
Sbjct: 240 RVESILSKISPMDCELLD---VADRPEHLILTHLPVPPVCIRPSVEMEGQAGSNEDDITM 296
Query: 361 KLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNL-PPLASTAKPLRG 537
KL +I+ +N L + + G LM+ ++LQ++ A ++NS+ L KPLRG
Sbjct: 297 KLIQIIEVNNVLRQGLEKGLAINNLMENWDFLQIQCAMYINSELPGLSAQYQGPGKPLRG 356
Query: 538 ISQRL 552
QRL
Sbjct: 357 FVQRL 361
[39][TOP]
>UniRef100_C6HPI8 DNA-directed RNA polymerase n=1 Tax=Ajellomyces capsulatus H143
RepID=C6HPI8_AJECH
Length = 1333
Score = 117 bits (292), Expect = 7e-25
Identities = 58/152 (38%), Positives = 95/152 (62%)
Frame = +1
Query: 97 ESAYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILR 276
+ ++ +AK++N D+++H + DDL+PLR L LF +++ ED L+ + RPE + +
Sbjct: 178 DKSFEEAKKSNPDIDKHFKKAHDDLHPLRVLRLFRSVSNEDCELLSLNPEEARPEVFLWQ 237
Query: 277 YLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWL 456
Y+P PP+CIRP+V + A STEDDLT KL +I+ N L ++ G P +++ +++
Sbjct: 238 YVPAPPVCIRPSVGQE--AASTEDDLTAKLGDIIQSNINLKNALIKGAPVQTIIECWDYM 295
Query: 457 QVEAARFMNSDATNLPPLASTAKPLRGISQRL 552
Q++ A ++NSD L A KP+RG QRL
Sbjct: 296 QLQLAVYINSDVPGLQK-ADFGKPIRGFCQRL 326
[40][TOP]
>UniRef100_C5JRK1 DNA-directed RNA polymerase n=1 Tax=Ajellomyces dermatitidis
SLH14081 RepID=C5JRK1_AJEDS
Length = 1456
Score = 117 bits (292), Expect = 7e-25
Identities = 58/152 (38%), Positives = 95/152 (62%)
Frame = +1
Query: 97 ESAYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILR 276
+ ++ +AK++N D+E+H + DDL+PLR L LF +++ +D L+ + RPE + +
Sbjct: 211 DQSFEEAKKSNPDIEKHFKKAHDDLHPLRVLKLFRSVSDKDCELLGLNPEEARPEVFLWQ 270
Query: 277 YLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWL 456
Y+P PP+CIRP+V + A STEDDLT KL +I+ N L ++ G P +++ +++
Sbjct: 271 YIPAPPVCIRPSVGQE--AASTEDDLTAKLGDIIQSNINLKNALYKGAPVQTIIECWDYM 328
Query: 457 QVEAARFMNSDATNLPPLASTAKPLRGISQRL 552
Q++ A ++NSD L A KP+RG QRL
Sbjct: 329 QLQLAVYINSDVPGLQK-ADFGKPIRGFCQRL 359
[41][TOP]
>UniRef100_C5GRI8 DNA-directed RNA polymerase n=1 Tax=Ajellomyces dermatitidis ER-3
RepID=C5GRI8_AJEDR
Length = 1456
Score = 117 bits (292), Expect = 7e-25
Identities = 58/152 (38%), Positives = 95/152 (62%)
Frame = +1
Query: 97 ESAYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILR 276
+ ++ +AK++N D+E+H + DDL+PLR L LF +++ +D L+ + RPE + +
Sbjct: 211 DQSFEEAKKSNPDIEKHFKKAHDDLHPLRVLKLFRSVSDKDCELLGLNPEEARPEVFLWQ 270
Query: 277 YLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWL 456
Y+P PP+CIRP+V + A STEDDLT KL +I+ N L ++ G P +++ +++
Sbjct: 271 YIPAPPVCIRPSVGQE--AASTEDDLTAKLGDIIQSNINLKNALYKGAPVQTIIECWDYM 328
Query: 457 QVEAARFMNSDATNLPPLASTAKPLRGISQRL 552
Q++ A ++NSD L A KP+RG QRL
Sbjct: 329 QLQLAVYINSDVPGLQK-ADFGKPIRGFCQRL 359
[42][TOP]
>UniRef100_C0NZL8 DNA-directed RNA polymerase n=1 Tax=Ajellomyces capsulatus G186AR
RepID=C0NZL8_AJECG
Length = 1456
Score = 117 bits (292), Expect = 7e-25
Identities = 58/152 (38%), Positives = 95/152 (62%)
Frame = +1
Query: 97 ESAYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILR 276
+ ++ +AK++N D+++H + DDL+PLR L LF +++ ED L+ + RPE + +
Sbjct: 211 DKSFEEAKKSNPDIDKHFKKAHDDLHPLRVLRLFRSVSNEDCELLSLNPEEARPEVFLWQ 270
Query: 277 YLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWL 456
Y+P PP+CIRP+V + A STEDDLT KL +I+ N L ++ G P +++ +++
Sbjct: 271 YVPAPPVCIRPSVGQE--AASTEDDLTAKLGDIIQSNINLKNALIKGAPVQTIIECWDYM 328
Query: 457 QVEAARFMNSDATNLPPLASTAKPLRGISQRL 552
Q++ A ++NSD L A KP+RG QRL
Sbjct: 329 QLQLAVYINSDVPGLQK-ADFGKPIRGFCQRL 359
[43][TOP]
>UniRef100_A6RGX8 DNA-directed RNA polymerase n=1 Tax=Ajellomyces capsulatus NAm1
RepID=A6RGX8_AJECN
Length = 1439
Score = 117 bits (292), Expect = 7e-25
Identities = 58/152 (38%), Positives = 95/152 (62%)
Frame = +1
Query: 97 ESAYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILR 276
+ ++ +AK++N D+++H + DDL+PLR L LF +++ ED L+ + RPE + +
Sbjct: 211 DKSFEEAKKSNPDIDKHFKKAHDDLHPLRVLRLFRSVSNEDCELLSLNPEEARPEVFLWQ 270
Query: 277 YLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWL 456
Y+P PP+CIRP+V + A STEDDLT KL +I+ N L ++ G P +++ +++
Sbjct: 271 YVPAPPVCIRPSVGQE--AASTEDDLTAKLGDIIQSNINLKNALIKGAPVQTIIECWDYM 328
Query: 457 QVEAARFMNSDATNLPPLASTAKPLRGISQRL 552
Q++ A ++NSD L A KP+RG QRL
Sbjct: 329 QLQLAVYINSDVPGLQK-ADFGKPIRGFCQRL 359
[44][TOP]
>UniRef100_UPI0000612BF9 UPI0000612BF9 related cluster n=1 Tax=Bos taurus
RepID=UPI0000612BF9
Length = 1392
Score = 116 bits (291), Expect = 1e-24
Identities = 65/169 (38%), Positives = 103/169 (60%)
Frame = +1
Query: 46 KKPTKTELREQAKSAAMESAYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVA 225
K T ++ + S+ ++S + A +N ++E L + ++LNPL L LF+ + AED+
Sbjct: 178 KYKTNKKVVDPIVSSFLQS-FETAIEHNKEVEPLLGKAQENLNPLVVLNLFKRIPAEDIP 236
Query: 226 LIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKS 405
L+ M G+P LIL L VPPLCIRP+V SD +G+ EDDLTMKLTEI+ +N+ + K
Sbjct: 237 LLLMNPEAGKPSDLILTRLLVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKH 296
Query: 406 INLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRL 552
G ++M+ ++LQ++ A ++NS+ + +P + K RG QRL
Sbjct: 297 RISGAKTQMIMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRL 345
[45][TOP]
>UniRef100_A4IF62 DNA-directed RNA polymerase III subunit RPC1 n=1 Tax=Bos taurus
RepID=RPC1_BOVIN
Length = 1390
Score = 116 bits (291), Expect = 1e-24
Identities = 65/169 (38%), Positives = 103/169 (60%)
Frame = +1
Query: 46 KKPTKTELREQAKSAAMESAYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVA 225
K T ++ + S+ ++S + A +N ++E L + ++LNPL L LF+ + AED+
Sbjct: 178 KYKTNKKVVDPIVSSFLQS-FETAIEHNKEVEPLLGKAQENLNPLVVLNLFKRIPAEDIP 236
Query: 226 LIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKS 405
L+ M G+P LIL L VPPLCIRP+V SD +G+ EDDLTMKLTEI+ +N+ + K
Sbjct: 237 LLLMNPEAGKPSDLILTRLLVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKH 296
Query: 406 INLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRL 552
G ++M+ ++LQ++ A ++NS+ + +P + K RG QRL
Sbjct: 297 RISGAKTQMIMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRL 345
[46][TOP]
>UniRef100_UPI0001554E8D PREDICTED: similar to Polymerase (RNA) III (DNA directed)
polypeptide A, 155kDa n=1 Tax=Ornithorhynchus anatinus
RepID=UPI0001554E8D
Length = 1382
Score = 116 bits (290), Expect = 1e-24
Identities = 61/142 (42%), Positives = 90/142 (63%)
Frame = +1
Query: 127 NADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIR 306
N ++E L R ++LNPL L LF+ + AED+ L+ M G+P LIL L VPPLCIR
Sbjct: 196 NKEVEPLLGRAQENLNPLVVLNLFKRIPAEDIPLLLMNPEAGKPSDLILTRLLVPPLCIR 255
Query: 307 PTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNS 486
P+V SD +G+ EDDLTMKLTEI+ +N+ + K G ++M+ ++LQ++ A ++NS
Sbjct: 256 PSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGAKTQMIMEDWDFLQLQCALYINS 315
Query: 487 DATNLPPLASTAKPLRGISQRL 552
+ + +P + K RG QRL
Sbjct: 316 ELSGIPLNMAPKKWTRGFVQRL 337
[47][TOP]
>UniRef100_UPI0000F2AF25 PREDICTED: similar to Proteasome (prosome, macropain) subunit,
alpha type, 2 n=1 Tax=Monodelphis domestica
RepID=UPI0000F2AF25
Length = 1390
Score = 116 bits (290), Expect = 1e-24
Identities = 61/142 (42%), Positives = 90/142 (63%)
Frame = +1
Query: 127 NADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIR 306
N ++E L R ++LNPL L LF+ + AED+ L+ M G+P LIL L VPPLCIR
Sbjct: 204 NKEVEPLLGRAQENLNPLVVLNLFKRIPAEDIPLLLMNPEAGKPSDLILTRLLVPPLCIR 263
Query: 307 PTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNS 486
P+V SD +G+ EDDLTMKLTEI+ +N+ + K G ++M+ ++LQ++ A ++NS
Sbjct: 264 PSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGAKTQMIMEDWDFLQLQCALYINS 323
Query: 487 DATNLPPLASTAKPLRGISQRL 552
+ + +P + K RG QRL
Sbjct: 324 ELSGIPLNMAPKKWTRGFVQRL 345
[48][TOP]
>UniRef100_UPI000069FEE9 DNA-directed RNA polymerase III largest subunit (EC 2.7.7.6)
(RPC155) (RPC1). n=1 Tax=Xenopus (Silurana) tropicalis
RepID=UPI000069FEE9
Length = 477
Score = 116 bits (290), Expect = 1e-24
Identities = 61/150 (40%), Positives = 92/150 (61%)
Frame = +1
Query: 103 AYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYL 282
++ A +N ++E L R ++LNPL L L + AED+ L+ M G+P LIL L
Sbjct: 195 SFDTAIEHNKEVESLLGRAQENLNPLIVLNLLRQIPAEDIPLLLMNPEAGKPSDLILTRL 254
Query: 283 PVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQV 462
VPPLCIRP+V SD +G+ EDDLTMKLTEI+ +N+ + K G ++M+ ++LQ+
Sbjct: 255 LVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRITGAKTQMIMEDWDFLQL 314
Query: 463 EAARFMNSDATNLPPLASTAKPLRGISQRL 552
+ A ++NS+ + +P + K RG QRL
Sbjct: 315 QCALYINSELSGIPMNMAPKKWTRGFVQRL 344
[49][TOP]
>UniRef100_Q7ZXW5 DNA-directed RNA polymerase n=1 Tax=Xenopus laevis
RepID=Q7ZXW5_XENLA
Length = 489
Score = 116 bits (290), Expect = 1e-24
Identities = 61/150 (40%), Positives = 92/150 (61%)
Frame = +1
Query: 103 AYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYL 282
++ A +N ++E L R ++LNPL L L + AED+ L+ M G+P LIL L
Sbjct: 195 SFDTAIEHNKEVESLLGRAQENLNPLVVLNLLRRIPAEDIPLLLMNPEAGKPSDLILTRL 254
Query: 283 PVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQV 462
VPPLCIRP+V SD +G+ EDDLTMKLTEI+ +N+ + K G ++M+ ++LQ+
Sbjct: 255 LVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRITGAKTQMIMEDWDFLQL 314
Query: 463 EAARFMNSDATNLPPLASTAKPLRGISQRL 552
+ A ++NS+ + +P + K RG QRL
Sbjct: 315 QCALYINSELSGIPMNMAPKKWTRGFVQRL 344
[50][TOP]
>UniRef100_A4IHM8 DNA-directed RNA polymerase n=1 Tax=Xenopus (Silurana) tropicalis
RepID=A4IHM8_XENTR
Length = 1390
Score = 116 bits (290), Expect = 1e-24
Identities = 61/150 (40%), Positives = 92/150 (61%)
Frame = +1
Query: 103 AYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYL 282
++ A +N ++E L R ++LNPL L L + AED+ L+ M G+P LIL L
Sbjct: 195 SFDTAIEHNKEVESLLGRAQENLNPLIVLNLLRQIPAEDIPLLLMNPEAGKPSDLILTRL 254
Query: 283 PVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQV 462
VPPLCIRP+V SD +G+ EDDLTMKLTEI+ +N+ + K G ++M+ ++LQ+
Sbjct: 255 LVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRITGAKTQMIMEDWDFLQL 314
Query: 463 EAARFMNSDATNLPPLASTAKPLRGISQRL 552
+ A ++NS+ + +P + K RG QRL
Sbjct: 315 QCALYINSELSGIPMNMAPKKWTRGFVQRL 344
[51][TOP]
>UniRef100_Q5KFV9 DNA-directed RNA polymerase n=1 Tax=Filobasidiella neoformans
RepID=Q5KFV9_CRYNE
Length = 1466
Score = 115 bits (289), Expect = 2e-24
Identities = 69/162 (42%), Positives = 96/162 (59%), Gaps = 4/162 (2%)
Frame = +1
Query: 79 AKSAAME----SAYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAV 246
AK A+M+ + + +A N + HL++ DDLNPL+ L LFE +TAED L+ +
Sbjct: 192 AKMASMKDEWMATFKNAVAENQAVATHLAKAVDDLNPLKVLNLFERITAEDCELLSLHPE 251
Query: 247 GGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPA 426
GRPE I +Y+ VPP CIRP+V S+ AG+ EDDLT KL EIV+ N LA ++LG
Sbjct: 252 VGRPEDYIWQYISVPPPCIRPSVASE--AGNNEDDLTAKLAEIVNYNNTLALMMDLGRGI 309
Query: 427 VLLMDGXEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRL 552
++ E L A ++NS A + + S KP+RG QRL
Sbjct: 310 EMISSNWEVLGQAVALYINSQAPGMQTIGS--KPIRGFVQRL 349
[52][TOP]
>UniRef100_Q55QA7 DNA-directed RNA polymerase n=1 Tax=Filobasidiella neoformans
RepID=Q55QA7_CRYNE
Length = 1466
Score = 115 bits (289), Expect = 2e-24
Identities = 69/162 (42%), Positives = 96/162 (59%), Gaps = 4/162 (2%)
Frame = +1
Query: 79 AKSAAME----SAYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAV 246
AK A+M+ + + +A N + HL++ DDLNPL+ L LFE +TAED L+ +
Sbjct: 192 AKMASMKDEWMATFKNAVAENQAVATHLAKAVDDLNPLKVLNLFERITAEDCELLSLHPE 251
Query: 247 GGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPA 426
GRPE I +Y+ VPP CIRP+V S+ AG+ EDDLT KL EIV+ N LA ++LG
Sbjct: 252 VGRPEDYIWQYISVPPPCIRPSVASE--AGNNEDDLTAKLAEIVNYNNTLALMMDLGRGI 309
Query: 427 VLLMDGXEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRL 552
++ E L A ++NS A + + S KP+RG QRL
Sbjct: 310 EMISSNWEVLGQAVALYINSQAPGMQTIGS--KPIRGFVQRL 349
[53][TOP]
>UniRef100_C7GMM0 Rpo31p n=1 Tax=Saccharomyces cerevisiae JAY291 RepID=C7GMM0_YEAS2
Length = 1460
Score = 115 bits (289), Expect = 2e-24
Identities = 65/151 (43%), Positives = 91/151 (60%), Gaps = 8/151 (5%)
Frame = +1
Query: 124 NNADLERHLSRVGDDLNPLRTLALFEAMTAEDVAL--IDMRAVGGRPERLILRYLPVPPL 297
+N +LER++ R DDLNPL+TL LF+ + + D L ID GRPE I RYLP PP+
Sbjct: 207 HNPELERYVKRCMDDLNPLKTLNLFKQIKSADCELLGIDATVPSGRPETYIWRYLPAPPV 266
Query: 298 CIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARF 477
CIRP+V S S EDDLT+KLTEIV + + ++ G +M+ ++LQ+ A +
Sbjct: 267 CIRPSVMMQDSPASNEDDLTVKLTEIVWTSSLIKAGLDKGISINNMMEHWDYLQLTVAMY 326
Query: 478 MNSDATNLPPLASTA------KPLRGISQRL 552
+NSD+ N L ++ KP+RG QRL
Sbjct: 327 INSDSVNPAMLPGSSNGGGKVKPIRGFCQRL 357
[54][TOP]
>UniRef100_B3LJF9 DNA-directed RNA polymerase n=3 Tax=Saccharomyces cerevisiae
RepID=B3LJF9_YEAS1
Length = 1460
Score = 115 bits (289), Expect = 2e-24
Identities = 65/151 (43%), Positives = 91/151 (60%), Gaps = 8/151 (5%)
Frame = +1
Query: 124 NNADLERHLSRVGDDLNPLRTLALFEAMTAEDVAL--IDMRAVGGRPERLILRYLPVPPL 297
+N +LER++ R DDLNPL+TL LF+ + + D L ID GRPE I RYLP PP+
Sbjct: 207 HNPELERYVKRCMDDLNPLKTLNLFKQIKSADCELLGIDATVPSGRPETYIWRYLPAPPV 266
Query: 298 CIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARF 477
CIRP+V S S EDDLT+KLTEIV + + ++ G +M+ ++LQ+ A +
Sbjct: 267 CIRPSVMMQDSPASNEDDLTVKLTEIVWTSSLIKAGLDKGISINNMMEHWDYLQLTVAMY 326
Query: 478 MNSDATNLPPLASTA------KPLRGISQRL 552
+NSD+ N L ++ KP+RG QRL
Sbjct: 327 INSDSVNPAMLPGSSNGGGKVKPIRGFCQRL 357
[55][TOP]
>UniRef100_P04051 DNA-directed RNA polymerase III subunit RPC1 n=2 Tax=Saccharomyces
cerevisiae RepID=RPC1_YEAST
Length = 1460
Score = 115 bits (289), Expect = 2e-24
Identities = 65/151 (43%), Positives = 91/151 (60%), Gaps = 8/151 (5%)
Frame = +1
Query: 124 NNADLERHLSRVGDDLNPLRTLALFEAMTAEDVAL--IDMRAVGGRPERLILRYLPVPPL 297
+N +LER++ R DDLNPL+TL LF+ + + D L ID GRPE I RYLP PP+
Sbjct: 207 HNPELERYVKRCMDDLNPLKTLNLFKQIKSADCELLGIDATVPSGRPETYIWRYLPAPPV 266
Query: 298 CIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARF 477
CIRP+V S S EDDLT+KLTEIV + + ++ G +M+ ++LQ+ A +
Sbjct: 267 CIRPSVMMQDSPASNEDDLTVKLTEIVWTSSLIKAGLDKGISINNMMEHWDYLQLTVAMY 326
Query: 478 MNSDATNLPPLASTA------KPLRGISQRL 552
+NSD+ N L ++ KP+RG QRL
Sbjct: 327 INSDSVNPAMLPGSSNGGGKVKPIRGFCQRL 357
[56][TOP]
>UniRef100_UPI00018665E5 hypothetical protein BRAFLDRAFT_127993 n=1 Tax=Branchiostoma
floridae RepID=UPI00018665E5
Length = 1391
Score = 115 bits (288), Expect = 2e-24
Identities = 58/152 (38%), Positives = 95/152 (62%)
Frame = +1
Query: 97 ESAYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILR 276
+S++ A +N ++E + R ++LNP+ L +F + +D+ + M A GRP+ +IL
Sbjct: 194 QSSFQSAVEHNKEIEGLIPRAQENLNPMVALHMFSRIPHQDLPFLIMDAEHGRPQDMILT 253
Query: 277 YLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWL 456
L VPPLCIRP+V ++ AG+ EDD+TMKLTEI+ +N+ + K G A ++M+ ++L
Sbjct: 254 RLLVPPLCIRPSVSTELKAGTNEDDVTMKLTEILFLNDVIQKHRATGARAQMIMEDWDFL 313
Query: 457 QVEAARFMNSDATNLPPLASTAKPLRGISQRL 552
Q++ A ++NS+ +P KP RG QRL
Sbjct: 314 QLQCALYINSEQGGIPLNMQPKKPTRGFCQRL 345
[57][TOP]
>UniRef100_Q0V3B7 DNA-directed RNA polymerase n=1 Tax=Phaeosphaeria nodorum
RepID=Q0V3B7_PHANO
Length = 1473
Score = 115 bits (288), Expect = 2e-24
Identities = 62/170 (36%), Positives = 99/170 (58%)
Frame = +1
Query: 43 YKKPTKTELREQAKSAAMESAYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDV 222
+ + T + A + ++ AK N DL++HL + DD++PLRTL LF+ ++ ED
Sbjct: 193 FNRSTAKTKKPPAGKIEFDQSFETAKAANPDLDKHLKKAVDDMHPLRTLNLFKKISPEDC 252
Query: 223 ALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAK 402
L+ M RPE LI Y+PVPP+ +RP+V + G+TEDD+T K+ +I ++ +
Sbjct: 253 ELLAMIPEDARPEMLIWEYMPVPPVALRPSVMQE--GGATEDDVTNKIGDICQISSIIRA 310
Query: 403 SINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRL 552
+ G P +LM+ ++LQ++ A ++NSDA L K +RG SQRL
Sbjct: 311 GLARGFPLQILMEQWDFLQLQIAMYINSDAPGLKQ-QGLQKTMRGFSQRL 359
[58][TOP]
>UniRef100_C5DY31 DNA-directed RNA polymerase n=1 Tax=Zygosaccharomyces rouxii CBS
732 RepID=C5DY31_ZYGRC
Length = 1458
Score = 115 bits (288), Expect = 2e-24
Identities = 72/190 (37%), Positives = 105/190 (55%), Gaps = 7/190 (3%)
Frame = +1
Query: 4 AGGGRGAARSIN-LYKKPTKTELREQAKSAAMESAYGDAKRNNADLERHLSRVGDDLNPL 180
AGGG + + I+ ++ K + E+ K + ++ +LER++ R DDLNPL
Sbjct: 169 AGGGSASLKIIHDTFRWAGKKSVPEKEKWIG---DWDSVLAHSPELERYVKRCMDDLNPL 225
Query: 181 RTLALFEAMTAEDVAL--IDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDL 354
+TL LF+ + ED L ID GRPE I RYLP PP+CIRP+V S S EDDL
Sbjct: 226 KTLNLFKQVKPEDCELLGIDSTIKSGRPETYIWRYLPAPPVCIRPSVMMQDSPASNEDDL 285
Query: 355 TMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLA----STA 522
T+KLTE+V + + + G +M+ ++LQ+ A ++NSD+ N L+
Sbjct: 286 TVKLTEVVWTSSLIKAGLEKGISINNMMEHWDYLQLAVAMYINSDSVNPAILSGGTGGKV 345
Query: 523 KPLRGISQRL 552
KP+RG QRL
Sbjct: 346 KPIRGFCQRL 355
[59][TOP]
>UniRef100_A3GEY3 DNA-directed RNA polymerase n=1 Tax=Pichia stipitis
RepID=A3GEY3_PICST
Length = 1448
Score = 115 bits (288), Expect = 2e-24
Identities = 76/196 (38%), Positives = 105/196 (53%), Gaps = 13/196 (6%)
Frame = +1
Query: 4 AGGGRGAARSIN-----LYKKPTKTELREQAKSAAMESAYGDAKRNNADLERHLSRVGDD 168
+G G A + ++ + KKPT + + + N +LE+ RV DD
Sbjct: 169 SGAGPAALKIVHDTFRWIGKKPTP-------EKEYWDKEFDQVLSRNPELEKFAKRVYDD 221
Query: 169 LNPLRTLALFEAMTAEDVALIDMR-AVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTE 345
LNPL+TL LF+ +T D L + A GGRPE I RYLP PP+CIRP+V D S E
Sbjct: 222 LNPLKTLNLFKQITPSDCELFGLDPARGGRPEMYIWRYLPAPPVCIRPSVMMDSQ--SNE 279
Query: 346 DDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLAS--- 516
DDLT+KLTEIV + + I G LM+ ++LQ+ A ++NSD+ N L S
Sbjct: 280 DDLTVKLTEIVWTSSLIKAGIEKGISINNLMEQWDYLQLSVAMYINSDSANPALLPSSGG 339
Query: 517 ----TAKPLRGISQRL 552
++KP+RG QRL
Sbjct: 340 GGSKSSKPIRGFCQRL 355
[60][TOP]
>UniRef100_UPI00017B08B5 UPI00017B08B5 related cluster n=1 Tax=Tetraodon nigroviridis
RepID=UPI00017B08B5
Length = 1391
Score = 115 bits (287), Expect = 3e-24
Identities = 63/146 (43%), Positives = 91/146 (62%)
Frame = +1
Query: 115 AKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPP 294
A +N LE LSR ++LNPL L LF+ ++ ED+ L+ M G P LIL L VPP
Sbjct: 202 AIEHNKVLEPLLSRAQENLNPLVVLNLFKRISREDIPLLLMNPEAGIPADLILTRLLVPP 261
Query: 295 LCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAAR 474
LCIRP+V SD +G+ EDDLTMKLTEI+ +N+ + K G ++M+ ++LQ++ A
Sbjct: 262 LCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRMTGAKTQMIMEDWDFLQLQCAL 321
Query: 475 FMNSDATNLPPLASTAKPLRGISQRL 552
++NS+ + +P + K RG QRL
Sbjct: 322 YINSELSGIPLNMAPKKWTRGFVQRL 347
[61][TOP]
>UniRef100_Q4S3H6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Tetraodon
nigroviridis RepID=Q4S3H6_TETNG
Length = 1319
Score = 115 bits (287), Expect = 3e-24
Identities = 63/146 (43%), Positives = 91/146 (62%)
Frame = +1
Query: 115 AKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPP 294
A +N LE LSR ++LNPL L LF+ ++ ED+ L+ M G P LIL L VPP
Sbjct: 144 AIEHNKVLEPLLSRAQENLNPLVVLNLFKRISREDIPLLLMNPEAGIPADLILTRLLVPP 203
Query: 295 LCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAAR 474
LCIRP+V SD +G+ EDDLTMKLTEI+ +N+ + K G ++M+ ++LQ++ A
Sbjct: 204 LCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRMTGAKTQMIMEDWDFLQLQCAL 263
Query: 475 FMNSDATNLPPLASTAKPLRGISQRL 552
++NS+ + +P + K RG QRL
Sbjct: 264 YINSELSGIPLNMAPKKWTRGFVQRL 289
[62][TOP]
>UniRef100_C4YGE6 DNA-directed RNA polymerase n=1 Tax=Candida albicans
RepID=C4YGE6_CANAL
Length = 1448
Score = 115 bits (287), Expect = 3e-24
Identities = 69/149 (46%), Positives = 92/149 (61%), Gaps = 7/149 (4%)
Frame = +1
Query: 127 NADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMR-AVGGRPERLILRYLPVPPLCI 303
N +LE+ R+ DDLNPL+TL LF+ +T +D L + A GGRPE I RYLP PP+CI
Sbjct: 208 NPELEKFAKRIHDDLNPLKTLNLFKQITPQDCELFGLDPAKGGRPEMYIWRYLPAPPVCI 267
Query: 304 RPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMN 483
RP+V D A S EDDLT+KLTEIV + + I G LM+ ++LQ+ A ++N
Sbjct: 268 RPSVMMD--AQSNEDDLTVKLTEIVWTSSMIRAGIVKGISINNLMEQWDYLQLSVAMYIN 325
Query: 484 SDATNLPPL------ASTAKPLRGISQRL 552
SD+ N P L A ++KP+R QRL
Sbjct: 326 SDSAN-PALSTGGGGAKSSKPIRAFCQRL 353
[63][TOP]
>UniRef100_B9WF61 DNA-directed RNA polymerase n=1 Tax=Candida dubliniensis CD36
RepID=B9WF61_CANDC
Length = 1448
Score = 115 bits (287), Expect = 3e-24
Identities = 69/149 (46%), Positives = 92/149 (61%), Gaps = 7/149 (4%)
Frame = +1
Query: 127 NADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMR-AVGGRPERLILRYLPVPPLCI 303
N +LE+ R+ DDLNPL+TL LF+ +T +D L + A GGRPE I RYLP PP+CI
Sbjct: 208 NPELEKFAKRIHDDLNPLKTLNLFKQITPQDCELFGLDPAKGGRPEMYIWRYLPAPPVCI 267
Query: 304 RPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMN 483
RP+V D A S EDDLT+KLTEIV + + I G LM+ ++LQ+ A ++N
Sbjct: 268 RPSVMMD--AQSNEDDLTVKLTEIVWTSSMIRAGIVKGISINNLMEQWDYLQLSVAMYIN 325
Query: 484 SDATNLPPL------ASTAKPLRGISQRL 552
SD+ N P L A ++KP+R QRL
Sbjct: 326 SDSAN-PALSTGGGGAKSSKPIRAFCQRL 353
[64][TOP]
>UniRef100_B6H2R1 DNA-directed RNA polymerase n=1 Tax=Penicillium chrysogenum
Wisconsin 54-1255 RepID=B6H2R1_PENCW
Length = 1448
Score = 115 bits (287), Expect = 3e-24
Identities = 60/152 (39%), Positives = 92/152 (60%)
Frame = +1
Query: 97 ESAYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILR 276
++++ +A+ N ++E+H + DD+NPLR L LF+ M+ D LI M RPE + +
Sbjct: 211 DNSFLEARGANPEVEKHFKKAQDDMNPLRVLKLFKKMSDSDCELIGMNPKEARPEMFLWQ 270
Query: 277 YLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWL 456
++P PP+CIRP+V D STEDDLT KL +IV N L ++ G P +M+ +++
Sbjct: 271 FIPAPPVCIRPSVGQD--GASTEDDLTAKLGDIVQSNINLKNALLKGAPVQTIMECWDYM 328
Query: 457 QVEAARFMNSDATNLPPLASTAKPLRGISQRL 552
Q++ A ++NSD L A KP+RG QRL
Sbjct: 329 QLQIAVYINSDVPGLNK-ADLGKPIRGFVQRL 359
[65][TOP]
>UniRef100_Q6BI69 DNA-directed RNA polymerase III subunit RPC1 n=1 Tax=Debaryomyces
hansenii RepID=RPC1_DEBHA
Length = 1457
Score = 115 bits (287), Expect = 3e-24
Identities = 67/159 (42%), Positives = 95/159 (59%), Gaps = 7/159 (4%)
Frame = +1
Query: 97 ESAYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDM-RAVGGRPERLIL 273
+ + + N +LE+ + R+ DDLNPL+ L LF+ ++ D L+ + A GGRPE I
Sbjct: 198 DKEFDEVFSRNPELEKFVKRIHDDLNPLKVLNLFKQISPSDCELLGIDSARGGRPEMYIW 257
Query: 274 RYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEW 453
RYLP PP+CIRP+V D A S EDDLT+KLTEIV + + I G LM+ ++
Sbjct: 258 RYLPAPPVCIRPSVMMD--AQSNEDDLTIKLTEIVWTSSLIKAGIEKGISINNLMEQWDY 315
Query: 454 LQVEAARFMNSDATNLPPLAS------TAKPLRGISQRL 552
LQ+ A ++NSD+ N L S ++KP+RG QRL
Sbjct: 316 LQLSVAMYINSDSANPALLPSSGGGSKSSKPIRGFCQRL 354
[66][TOP]
>UniRef100_UPI000194C79C PREDICTED: polymerase (RNA) III (DNA directed) polypeptide A,
155kDa n=1 Tax=Taeniopygia guttata RepID=UPI000194C79C
Length = 1390
Score = 114 bits (286), Expect = 4e-24
Identities = 60/142 (42%), Positives = 89/142 (62%)
Frame = +1
Query: 127 NADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIR 306
N ++E L R ++LNPL L LF+ + ED+ L+ M G+P LIL L VPPLCIR
Sbjct: 204 NKEVEPLLGRAQENLNPLVVLNLFKRIPVEDIPLLLMNPQAGKPSDLILTRLLVPPLCIR 263
Query: 307 PTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNS 486
P+V SD +G+ EDDLTMKLTEI+ +N+ + K G ++M+ ++LQ++ A ++NS
Sbjct: 264 PSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGAKTQMIMEDWDFLQLQCALYINS 323
Query: 487 DATNLPPLASTAKPLRGISQRL 552
+ + +P + K RG QRL
Sbjct: 324 ELSGIPLNMAPKKWTRGFVQRL 345
[67][TOP]
>UniRef100_UPI00015A5DDB PREDICTED: im:7139382 n=1 Tax=Danio rerio RepID=UPI00015A5DDB
Length = 1390
Score = 114 bits (286), Expect = 4e-24
Identities = 69/178 (38%), Positives = 107/178 (60%)
Frame = +1
Query: 19 GAARSINLYKKPTKTELREQAKSAAMESAYGDAKRNNADLERHLSRVGDDLNPLRTLALF 198
G + I+ K TK ++ + A S ++S + A +N ++E L+R ++LNPL L LF
Sbjct: 170 GLLKIIHEKYKSTK-KVVDPAVSDFLQS-FDVAIEHNKEVESLLTRAQENLNPLVVLNLF 227
Query: 199 EAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIV 378
+ +DV L+ M G+P LIL L VPPLCIRP+V SD +G+ EDDLTMKLTEI+
Sbjct: 228 RRIPDKDVPLLLMNPESGKPADLILTRLLVPPLCIRPSVVSDLKSGTNEDDLTMKLTEII 287
Query: 379 HMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRL 552
+N+ + K G ++M+ ++LQ++ A ++NS+ + +P + K RG QRL
Sbjct: 288 FLNDVIKKHRMTGAKTQMIMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRL 345
[68][TOP]
>UniRef100_UPI00003BE6A5 hypothetical protein DEHA0G13849g n=1 Tax=Debaryomyces hansenii
CBS767 RepID=UPI00003BE6A5
Length = 1457
Score = 114 bits (286), Expect = 4e-24
Identities = 67/149 (44%), Positives = 92/149 (61%), Gaps = 7/149 (4%)
Frame = +1
Query: 127 NADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDM-RAVGGRPERLILRYLPVPPLCI 303
N +LE+ + R+ DDLNPL+ L LF+ ++ D L+ + A GGRPE I RYLP PP+CI
Sbjct: 208 NPELEKFVKRIHDDLNPLKVLNLFKQISPSDCELLGIDSARGGRPEMYIWRYLPAPPVCI 267
Query: 304 RPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMN 483
RP+V D A S EDDLT+KLTEIV + + I G LM+ ++LQ+ A ++N
Sbjct: 268 RPSVMMD--AQSNEDDLTIKLTEIVWTSSLIKAGIEKGISINNLMEQWDYLQLSVAMYIN 325
Query: 484 SDATNLPPLAS------TAKPLRGISQRL 552
SD+ N L S ++KP+RG QRL
Sbjct: 326 SDSANPALLPSSGGGSKSSKPIRGFCQRL 354
[69][TOP]
>UniRef100_Q01DV6 DNA-directed RNA polymerase n=1 Tax=Ostreococcus tauri
RepID=Q01DV6_OSTTA
Length = 1406
Score = 114 bits (285), Expect = 5e-24
Identities = 61/147 (41%), Positives = 89/147 (60%), Gaps = 1/147 (0%)
Frame = +1
Query: 115 AKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPP 294
A + N L L +V DDLNP+R L++ + +T +D L+D + RPE L+L +LPVPP
Sbjct: 217 ALKYNEQLRASLPKVQDDLNPIRVLSILQRITDQDCELLD---IADRPEHLLLTHLPVPP 273
Query: 295 LCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAAR 474
CIRP+V D +GS EDD+TMKL +I+ +N L + + G LM+ ++LQ++ A
Sbjct: 274 CCIRPSVEMDGVSGSNEDDITMKLIQIIEVNNVLRQGLEKGLTINNLMENWDFLQIQCAM 333
Query: 475 FMNSDATNLP-PLASTAKPLRGISQRL 552
++NS+ L KPLRG QRL
Sbjct: 334 YINSELPGLSLQYQGPGKPLRGFVQRL 360
[70][TOP]
>UniRef100_A1CLD8 DNA-directed RNA polymerase n=1 Tax=Aspergillus clavatus
RepID=A1CLD8_ASPCL
Length = 1449
Score = 114 bits (285), Expect = 5e-24
Identities = 59/152 (38%), Positives = 93/152 (61%)
Frame = +1
Query: 97 ESAYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILR 276
+ ++ +A+ +NA++E+H + DD+N LR L LF+ ++ D L+ + RPE + +
Sbjct: 211 DRSFDEARNSNAEVEKHYKKAQDDMNALRVLNLFKKISDTDCELLGLNPKEARPEMFLWQ 270
Query: 277 YLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWL 456
++P PP+CIRP+V D A STEDDLT KL +IV N L S+ G P +M+ +++
Sbjct: 271 FIPAPPVCIRPSVGQD--AASTEDDLTAKLGDIVQSNINLKNSLLKGAPVQTIMECWDYM 328
Query: 457 QVEAARFMNSDATNLPPLASTAKPLRGISQRL 552
Q++ A ++NSD L A KP+RG QRL
Sbjct: 329 QLQIAVYINSDVPGLNK-ADLGKPIRGFVQRL 359
[71][TOP]
>UniRef100_Q5A164 DNA-directed RNA polymerase n=1 Tax=Candida albicans
RepID=Q5A164_CANAL
Length = 1448
Score = 114 bits (284), Expect = 6e-24
Identities = 68/149 (45%), Positives = 92/149 (61%), Gaps = 7/149 (4%)
Frame = +1
Query: 127 NADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMR-AVGGRPERLILRYLPVPPLCI 303
N +LE+ R+ DDLNPL+TL LF+ +T +D L + A GGRPE I RYLP PP+CI
Sbjct: 208 NPELEKFAKRIHDDLNPLKTLNLFKQITPQDCELFGLDPAKGGRPEMYIWRYLPAPPVCI 267
Query: 304 RPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMN 483
RP+V D + S EDDLT+KLTEIV + + I G LM+ ++LQ+ A ++N
Sbjct: 268 RPSVMMD--SQSNEDDLTVKLTEIVWTSSMIRAGIVKGISINNLMEQWDYLQLSVAMYIN 325
Query: 484 SDATNLPPL------ASTAKPLRGISQRL 552
SD+ N P L A ++KP+R QRL
Sbjct: 326 SDSAN-PALSTGGGGAKSSKPIRAFCQRL 353
[72][TOP]
>UniRef100_Q5A0Z3 DNA-directed RNA polymerase n=1 Tax=Candida albicans
RepID=Q5A0Z3_CANAL
Length = 1448
Score = 114 bits (284), Expect = 6e-24
Identities = 68/149 (45%), Positives = 92/149 (61%), Gaps = 7/149 (4%)
Frame = +1
Query: 127 NADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMR-AVGGRPERLILRYLPVPPLCI 303
N +LE+ R+ DDLNPL+TL LF+ +T +D L + A GGRPE I RYLP PP+CI
Sbjct: 208 NPELEKFAKRIHDDLNPLKTLNLFKQITPQDCELFGLDPAKGGRPEMYIWRYLPAPPVCI 267
Query: 304 RPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMN 483
RP+V D + S EDDLT+KLTEIV + + I G LM+ ++LQ+ A ++N
Sbjct: 268 RPSVMMD--SQSNEDDLTVKLTEIVWTSSMIRAGIVKGISINNLMEQWDYLQLSVAMYIN 325
Query: 484 SDATNLPPL------ASTAKPLRGISQRL 552
SD+ N P L A ++KP+R QRL
Sbjct: 326 SDSAN-PALSTGGGGAKSSKPIRAFCQRL 353
[73][TOP]
>UniRef100_Q0CS43 DNA-directed RNA polymerase n=1 Tax=Aspergillus terreus NIH2624
RepID=Q0CS43_ASPTN
Length = 1450
Score = 114 bits (284), Expect = 6e-24
Identities = 64/170 (37%), Positives = 97/170 (57%)
Frame = +1
Query: 43 YKKPTKTELREQAKSAAMESAYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDV 222
Y T T+ A + + +A+R+N ++E+H + DDLN LR L LF+ ++ D
Sbjct: 193 YNISTSTKKVLPPGKGAFDDSLMEARRHNPEVEKHHKKAQDDLNALRVLNLFKRISDTDC 252
Query: 223 ALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAK 402
L+ + RPE + +++P PP+CIRP+V D A STEDDLT KL +IV N L
Sbjct: 253 ELLGLNPREARPEMFLWQFIPAPPVCIRPSVGQD--AASTEDDLTAKLGDIVQSNINLKN 310
Query: 403 SINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRL 552
S+ G P +M+ +++Q++ A ++NSD L A KP+RG QRL
Sbjct: 311 SLLKGAPVHTIMECWDYMQLQIAVYINSDVPGLNK-ADLGKPIRGFVQRL 359
[74][TOP]
>UniRef100_B2VYJ3 DNA-directed RNA polymerase n=1 Tax=Pyrenophora tritici-repentis
Pt-1C-BFP RepID=B2VYJ3_PYRTR
Length = 1471
Score = 114 bits (284), Expect = 6e-24
Identities = 64/175 (36%), Positives = 101/175 (57%)
Frame = +1
Query: 28 RSINLYKKPTKTELREQAKSAAMESAYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAM 207
RS KKP +L + ++ AK N D+++H+ + DD++PLR L LF+ +
Sbjct: 195 RSTAKTKKPPPGKLE-------FDQSFDTAKSANPDVDKHVKKAVDDMHPLRALNLFKKI 247
Query: 208 TAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMN 387
+ ED L+ M RPE LI Y+PVPP+ +RP+V + G+TEDD+T K+ +I H++
Sbjct: 248 SPEDCELLAMVPEDARPEMLIWEYMPVPPVALRPSVMQE--GGATEDDVTNKIGDICHIS 305
Query: 388 EALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRL 552
+ + G P +LM+ ++LQ++ A ++NSDA L K +RG SQRL
Sbjct: 306 SIIRAGLARGFPLQILMEQWDFLQLQIAMYINSDAPGLKQ-QGLQKTMRGFSQRL 359
[75][TOP]
>UniRef100_UPI00016E6B7B UPI00016E6B7B related cluster n=1 Tax=Takifugu rubripes
RepID=UPI00016E6B7B
Length = 649
Score = 113 bits (283), Expect = 8e-24
Identities = 62/146 (42%), Positives = 90/146 (61%)
Frame = +1
Query: 115 AKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPP 294
A +N LE LSR ++LNPL LF+ ++ ED+ L+ M G P LIL L VPP
Sbjct: 200 AIEHNKVLEPLLSRAQENLNPLVVRNLFKRISREDIPLLLMNPEAGTPADLILTRLLVPP 259
Query: 295 LCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAAR 474
LCIRP+V SD +G+ EDDLTMKLTEI+ +N+ + K G ++M+ ++LQ++ A
Sbjct: 260 LCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRMTGAKTQMIMEDWDFLQLQCAL 319
Query: 475 FMNSDATNLPPLASTAKPLRGISQRL 552
++NS+ + +P + K RG QRL
Sbjct: 320 YINSELSGIPLNMAPKKWTRGFVQRL 345
[76][TOP]
>UniRef100_UPI00016E6B7A UPI00016E6B7A related cluster n=1 Tax=Takifugu rubripes
RepID=UPI00016E6B7A
Length = 1320
Score = 113 bits (283), Expect = 8e-24
Identities = 62/146 (42%), Positives = 90/146 (61%)
Frame = +1
Query: 115 AKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPP 294
A +N LE LSR ++LNPL LF+ ++ ED+ L+ M G P LIL L VPP
Sbjct: 144 AIEHNKVLEPLLSRAQENLNPLVVRNLFKRISREDIPLLLMNPEAGTPADLILTRLLVPP 203
Query: 295 LCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAAR 474
LCIRP+V SD +G+ EDDLTMKLTEI+ +N+ + K G ++M+ ++LQ++ A
Sbjct: 204 LCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRMTGAKTQMIMEDWDFLQLQCAL 263
Query: 475 FMNSDATNLPPLASTAKPLRGISQRL 552
++NS+ + +P + K RG QRL
Sbjct: 264 YINSELSGIPLNMAPKKWTRGFVQRL 289
[77][TOP]
>UniRef100_UPI00016E6B79 UPI00016E6B79 related cluster n=1 Tax=Takifugu rubripes
RepID=UPI00016E6B79
Length = 1390
Score = 113 bits (283), Expect = 8e-24
Identities = 62/146 (42%), Positives = 90/146 (61%)
Frame = +1
Query: 115 AKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPP 294
A +N LE LSR ++LNPL LF+ ++ ED+ L+ M G P LIL L VPP
Sbjct: 200 AIEHNKVLEPLLSRAQENLNPLVVRNLFKRISREDIPLLLMNPEAGTPADLILTRLLVPP 259
Query: 295 LCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAAR 474
LCIRP+V SD +G+ EDDLTMKLTEI+ +N+ + K G ++M+ ++LQ++ A
Sbjct: 260 LCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRMTGAKTQMIMEDWDFLQLQCAL 319
Query: 475 FMNSDATNLPPLASTAKPLRGISQRL 552
++NS+ + +P + K RG QRL
Sbjct: 320 YINSELSGIPLNMAPKKWTRGFVQRL 345
[78][TOP]
>UniRef100_A4RTE2 DNA-directed RNA polymerase n=1 Tax=Ostreococcus lucimarinus
CCE9901 RepID=A4RTE2_OSTLU
Length = 1395
Score = 113 bits (283), Expect = 8e-24
Identities = 60/147 (40%), Positives = 88/147 (59%), Gaps = 1/147 (0%)
Frame = +1
Query: 115 AKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPP 294
A + N L L +V DDLNP+R L + + +T+ D L+D + RPE L+L +LPVPP
Sbjct: 216 ALKYNEQLRASLPKVQDDLNPIRVLGILQRVTSADCELLD---IADRPEHLLLTHLPVPP 272
Query: 295 LCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAAR 474
CIRP+V D +GS EDD+TMKL +I+ +N L + + G +M+ ++LQ++ A
Sbjct: 273 CCIRPSVEMDGVSGSNEDDITMKLIQIIEVNNVLRQGLEKGLAVNNMMENWDFLQIQCAM 332
Query: 475 FMNSDATNLP-PLASTAKPLRGISQRL 552
++NS+ L KPLRG QRL
Sbjct: 333 YINSELPGLSLQYQGPGKPLRGFVQRL 359
[79][TOP]
>UniRef100_C5FEK3 DNA-directed RNA polymerase n=1 Tax=Microsporum canis CBS 113480
RepID=C5FEK3_NANOT
Length = 1443
Score = 113 bits (282), Expect = 1e-23
Identities = 61/156 (39%), Positives = 98/156 (62%), Gaps = 2/156 (1%)
Frame = +1
Query: 91 AMESAYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLI 270
A + ++ +AK++N D+E+H RV DDLNPLR L LF ++ ED L+ + RPE +
Sbjct: 208 AFDRSFEEAKKSNPDIEKHYRRVFDDLNPLRVLKLFRRISDEDCELLSLNVDEARPEYFL 267
Query: 271 LRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXE 450
+++P PP+ IRP+V + STEDDLT KL +IV N L +++ G P +++ +
Sbjct: 268 WQFIPAPPVPIRPSVGQE--GASTEDDLTAKLGDIVQSNLNLKMALDKGAPVQTIIECWD 325
Query: 451 WLQVEAARFMNSDATNLPPLAST--AKPLRGISQRL 552
++Q++ A ++NSD +P L +T K +RG+ QRL
Sbjct: 326 YMQLQIAVYINSD---IPGLQNTDSKKSIRGLCQRL 358
[80][TOP]
>UniRef100_A5E7R0 DNA-directed RNA polymerase n=1 Tax=Lodderomyces elongisporus
RepID=A5E7R0_LODEL
Length = 1450
Score = 112 bits (281), Expect = 1e-23
Identities = 66/153 (43%), Positives = 93/153 (60%), Gaps = 11/153 (7%)
Frame = +1
Query: 127 NADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAV-GGRPERLILRYLPVPPLCI 303
N +LE++ R+ +D NPL+TL LF+ +T D L M + GGRPE I RYLP PP+CI
Sbjct: 209 NPELEKYAKRITEDFNPLKTLNLFKQITPSDCELFGMDPLRGGRPEMYIWRYLPAPPVCI 268
Query: 304 RPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMN 483
RP+V D A S EDDLT+KLTEIV + + I G LM+ ++LQ+ A ++N
Sbjct: 269 RPSVMMD--AQSNEDDLTVKLTEIVWTSSMIKAGIAKGISMNNLMEQWDYLQLSVAMYIN 326
Query: 484 SDATN---LPPL-------ASTAKPLRGISQRL 552
SD+ N +P + + ++KP+RG QRL
Sbjct: 327 SDSANPALIPSVGGGGGGGSKSSKPIRGFCQRL 359
[81][TOP]
>UniRef100_A2QU24 DNA-directed RNA polymerase n=1 Tax=Aspergillus niger CBS 513.88
RepID=A2QU24_ASPNC
Length = 1450
Score = 112 bits (281), Expect = 1e-23
Identities = 58/152 (38%), Positives = 93/152 (61%)
Frame = +1
Query: 97 ESAYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILR 276
+ ++ +A+ +NA++E+H + DD+N LR L LF+ ++ D L+ + RPE + +
Sbjct: 211 DRSFDEARTSNAEVEKHYKKAQDDMNALRVLNLFKKISDTDCELLGLNPKEARPEMFLWQ 270
Query: 277 YLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWL 456
++P PP+CIRP+V D A STEDDLT KL +IV N L ++ G P +M+ +++
Sbjct: 271 FIPAPPVCIRPSVGQD--AASTEDDLTAKLGDIVQSNINLKNALLKGAPVQTIMECWDYM 328
Query: 457 QVEAARFMNSDATNLPPLASTAKPLRGISQRL 552
Q++ A ++NSD L A KP+RG QRL
Sbjct: 329 QLQIAVYINSDVPGLNK-ADLGKPIRGFVQRL 359
[82][TOP]
>UniRef100_C5MI79 DNA-directed RNA polymerase (Fragment) n=1 Tax=Candida tropicalis
MYA-3404 RepID=C5MI79_CANTT
Length = 1159
Score = 112 bits (280), Expect = 2e-23
Identities = 67/151 (44%), Positives = 91/151 (60%), Gaps = 7/151 (4%)
Frame = +1
Query: 121 RNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMR-AVGGRPERLILRYLPVPPL 297
+ N +L + + R+ DDLNPL+TL LF+ +T D L + A GGRPE I RYLP PP+
Sbjct: 206 QRNPELSKFVKRIHDDLNPLKTLNLFKQITPSDCELFGLDPAKGGRPEMYIWRYLPAPPV 265
Query: 298 CIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARF 477
CIRP+V D A S EDDLT+KLTEIV + + I G LM+ +++Q+ A +
Sbjct: 266 CIRPSVMMD--AQSNEDDLTVKLTEIVWTSSMIKAGILKGISINNLMEQWDYMQLSVAMY 323
Query: 478 MNSDATNLPPL------ASTAKPLRGISQRL 552
+NSD+ N P L A +KP+R QRL
Sbjct: 324 INSDSAN-PALSAGGGGAKASKPIRAFCQRL 353
[83][TOP]
>UniRef100_A8Q6K6 DNA-directed RNA polymerase n=1 Tax=Malassezia globosa CBS 7966
RepID=A8Q6K6_MALGO
Length = 1376
Score = 112 bits (279), Expect = 2e-23
Identities = 66/172 (38%), Positives = 99/172 (57%), Gaps = 3/172 (1%)
Frame = +1
Query: 46 KKPTKTELREQAKSAAMESAYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVA 225
+K T+ E E K+ + + G N +L HL++ +DLNPLR L LF ++ ED
Sbjct: 158 QKKTEEEQLEFRKTFSTAVSMG-----NGELAPHLNKAQEDLNPLRVLDLFRRISDEDCE 212
Query: 226 LIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKS 405
L+ ++ GRPE I +Y+ VPP+CIRP+V D + EDDLT+KLTEIV N +
Sbjct: 213 LLALKPQFGRPEEYIWQYICVPPVCIRPSVAQD--GATNEDDLTVKLTEIVFTNNIIKSG 270
Query: 406 INLGGPAVL---LMDGXEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRL 552
+ G L++ ++LQ+ A ++NS+ +PP+ S KP+RG QRL
Sbjct: 271 LTKGSKGTTTAQLVEQWDFLQLSVALYINSEMPGVPPM-SGHKPIRGFCQRL 321
[84][TOP]
>UniRef100_Q756K2 DNA-directed RNA polymerase n=1 Tax=Eremothecium gossypii
RepID=Q756K2_ASHGO
Length = 1459
Score = 111 bits (278), Expect = 3e-23
Identities = 63/152 (41%), Positives = 91/152 (59%), Gaps = 8/152 (5%)
Frame = +1
Query: 121 RNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVAL--IDMRAVGGRPERLILRYLPVPP 294
+++ +LER++ R ++LNPL+TL LF+ ++ +D L ID GRPE I RYLP PP
Sbjct: 206 QHSPELERYMKRTMENLNPLKTLNLFKQISPQDCELLGIDSTVKAGRPETYIWRYLPAPP 265
Query: 295 LCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAAR 474
+CIRP+V S S EDDLT+KLTEIV + + + G +M+ ++LQ+ A
Sbjct: 266 VCIRPSVMMQDSPASNEDDLTVKLTEIVWTSSLIKAGLEKGISINNMMEQWDYLQMAVAM 325
Query: 475 FMNSDATNLPPL------ASTAKPLRGISQRL 552
++NSD+ N P L KP+RG QRL
Sbjct: 326 YINSDSVN-PALMPGGNGGGKTKPIRGFCQRL 356
[85][TOP]
>UniRef100_A1D5Y9 DNA-directed RNA polymerase n=1 Tax=Neosartorya fischeri NRRL 181
RepID=A1D5Y9_NEOFI
Length = 1453
Score = 111 bits (278), Expect = 3e-23
Identities = 57/152 (37%), Positives = 93/152 (61%)
Frame = +1
Query: 97 ESAYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILR 276
+ ++ +A+ +NA++E+H + DD+N LR L LF+ ++ D L+ + RPE + +
Sbjct: 211 DRSFDEARTSNAEVEKHYKKAQDDMNALRVLNLFKKVSDTDCELLGLNPKEARPEMFLWQ 270
Query: 277 YLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWL 456
++P PP+CIRP+V D A STEDDLT KL +IV N L ++ G P +++ +++
Sbjct: 271 FIPAPPVCIRPSVGQD--AASTEDDLTAKLGDIVQSNINLKNALMKGAPVQTIVECWDYM 328
Query: 457 QVEAARFMNSDATNLPPLASTAKPLRGISQRL 552
Q++ A ++NSD L A KP+RG QRL
Sbjct: 329 QLQIAVYINSDVPGLNK-ADLGKPIRGFVQRL 359
[86][TOP]
>UniRef100_C4Y380 DNA-directed RNA polymerase n=1 Tax=Clavispora lusitaniae ATCC
42720 RepID=C4Y380_CLAL4
Length = 1491
Score = 111 bits (277), Expect = 4e-23
Identities = 66/159 (41%), Positives = 92/159 (57%), Gaps = 10/159 (6%)
Frame = +1
Query: 106 YGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAV-GGRPERLILRYL 282
+ + N +LE+ RV +DLNPL+ L LF +T +D L + A GGRPE I RYL
Sbjct: 234 FDEVFHRNPELEKFAKRVHEDLNPLKVLNLFRQITPQDCELFGIDAARGGRPEMYIWRYL 293
Query: 283 PVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQV 462
P PP+CIRP+V D S EDDLT+KLTEIV + + I G +M+ ++LQ+
Sbjct: 294 PAPPVCIRPSVMMDNQ--SNEDDLTVKLTEIVWTSSLIKAGIEKGISINNMMEQWDYLQL 351
Query: 463 EAARFMNSDATNLPPL---------ASTAKPLRGISQRL 552
A ++NSD+ N P L + ++KP+RG QRL
Sbjct: 352 SVAMYINSDSAN-PALLPGGMGGSGSKSSKPIRGFCQRL 389
[87][TOP]
>UniRef100_Q6CB20 DNA-directed RNA polymerase n=1 Tax=Yarrowia lipolytica
RepID=Q6CB20_YARLI
Length = 1483
Score = 110 bits (275), Expect = 7e-23
Identities = 63/152 (41%), Positives = 89/152 (58%)
Frame = +1
Query: 97 ESAYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILR 276
++++ AK + D+ER + DDLNPL+ LF + D L+ M GRPE I R
Sbjct: 200 DNSFNTAKESIPDVERLQKKAMDDLNPLKVFNLFREILPMDCELLGMDPGKGRPETYIWR 259
Query: 277 YLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWL 456
Y+P PP+CIRP+V D + S EDDLT+KLTEIV + + + G LM+ E L
Sbjct: 260 YMPAPPVCIRPSVMQD--SASNEDDLTVKLTEIVWTSAIIEAGLKQGMAVASLMEQWELL 317
Query: 457 QVEAARFMNSDATNLPPLASTAKPLRGISQRL 552
Q+ A ++NSD T P S +KP+R ++QRL
Sbjct: 318 QLAVAVYINSD-TPQGPGQSASKPIRALTQRL 348
[88][TOP]
>UniRef100_Q2U3T5 DNA-directed RNA polymerase n=1 Tax=Aspergillus oryzae
RepID=Q2U3T5_ASPOR
Length = 1447
Score = 110 bits (275), Expect = 7e-23
Identities = 58/152 (38%), Positives = 92/152 (60%)
Frame = +1
Query: 97 ESAYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILR 276
+ ++ +A+ +N ++E+H + DD+N LR L LF+ ++ D L+ + RPE + +
Sbjct: 211 DRSFEEARSHNPEVEKHHKKAQDDMNALRVLNLFKRISDTDCELLGLDPKEARPEMFLWQ 270
Query: 277 YLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWL 456
Y+P PP+CIRP+V D A STEDDLT KL +IV N L ++ G P +M+ +++
Sbjct: 271 YIPAPPVCIRPSVGQD--ASSTEDDLTAKLGDIVQSNINLKNALLKGAPVQTIMECWDYM 328
Query: 457 QVEAARFMNSDATNLPPLASTAKPLRGISQRL 552
Q++ A ++NSD L A KP+RG QRL
Sbjct: 329 QLQIAVYINSDVPGLNK-ADLGKPIRGFVQRL 359
[89][TOP]
>UniRef100_B8NTG3 DNA-directed RNA polymerase n=1 Tax=Aspergillus flavus NRRL3357
RepID=B8NTG3_ASPFN
Length = 1436
Score = 110 bits (275), Expect = 7e-23
Identities = 58/152 (38%), Positives = 92/152 (60%)
Frame = +1
Query: 97 ESAYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILR 276
+ ++ +A+ +N ++E+H + DD+N LR L LF+ ++ D L+ + RPE + +
Sbjct: 211 DRSFEEARSHNPEVEKHHKKAQDDMNALRVLNLFKRISDTDCELLGLDPKEARPEMFLWQ 270
Query: 277 YLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWL 456
Y+P PP+CIRP+V D A STEDDLT KL +IV N L ++ G P +M+ +++
Sbjct: 271 YIPAPPVCIRPSVGQD--ASSTEDDLTAKLGDIVQSNINLKNALLKGAPVQTIMECWDYM 328
Query: 457 QVEAARFMNSDATNLPPLASTAKPLRGISQRL 552
Q++ A ++NSD L A KP+RG QRL
Sbjct: 329 QLQIAVYINSDVPGLNK-ADLGKPIRGFVQRL 359
[90][TOP]
>UniRef100_A8PGH2 DNA-directed RNA polymerase n=1 Tax=Coprinopsis cinerea
okayama7#130 RepID=A8PGH2_COPC7
Length = 1403
Score = 110 bits (275), Expect = 7e-23
Identities = 68/171 (39%), Positives = 100/171 (58%), Gaps = 3/171 (1%)
Frame = +1
Query: 49 KPTKTELREQAKS--AAMESAYGDAKRNNADLERHLSR-VGDDLNPLRTLALFEAMTAED 219
K T EL + K+ AA+E+ +L +L++ V +DLNPL+ L LF ++ ED
Sbjct: 179 KKTADELEKWKKTFVAAVEA--------QKELGMYLNKAVVEDLNPLKVLDLFRRISDED 230
Query: 220 VALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALA 399
L+ +R GRPE+ I +YL VPP+CIRP+V D S EDD+T+KLTEIV N +
Sbjct: 231 CELLGLRPEWGRPEQFIWQYLSVPPVCIRPSVAQD--GASNEDDITVKLTEIVFTNALIK 288
Query: 400 KSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRL 552
+ ++ G P M+ E+LQ+ A ++NS+ +P KP+RG QRL
Sbjct: 289 QGLSKGAPTPQFMEQWEFLQLSVAMYINSELPGVPSQMG-QKPIRGFVQRL 338
[91][TOP]
>UniRef100_A7SJ34 DNA-directed RNA polymerase n=1 Tax=Nematostella vectensis
RepID=A7SJ34_NEMVE
Length = 1398
Score = 109 bits (273), Expect = 1e-22
Identities = 56/152 (36%), Positives = 92/152 (60%)
Frame = +1
Query: 97 ESAYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILR 276
+S++ A NN +L L + + LNPLR L +F+ + +D L+ P LI+R
Sbjct: 194 QSSFDVALENNKELSPLLPKAQEVLNPLRVLDIFQQIPEQDYPLLMFSPGMSHPHDLIMR 253
Query: 277 YLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWL 456
+ PP+CIRP+V S+ ++GS EDD+TMKLTEIV +N+ + K ++G ++M+ ++L
Sbjct: 254 RILAPPVCIRPSVISELASGSNEDDVTMKLTEIVFLNDVIRKHRSVGAKVQMIMEDWDFL 313
Query: 457 QVEAARFMNSDATNLPPLASTAKPLRGISQRL 552
Q++ A ++NS+ + +P K RG QRL
Sbjct: 314 QLQCALYINSEMSGIPLNMQPKKGTRGFVQRL 345
[92][TOP]
>UniRef100_B0XZZ0 DNA-directed RNA polymerase n=2 Tax=Aspergillus fumigatus
RepID=B0XZZ0_ASPFC
Length = 1453
Score = 109 bits (273), Expect = 1e-22
Identities = 56/152 (36%), Positives = 92/152 (60%)
Frame = +1
Query: 97 ESAYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILR 276
+ ++ +A+ +N ++E+H + DD+N LR L LF+ ++ D L+ + RPE + +
Sbjct: 211 DRSFDEARTSNPEVEKHYKKAQDDMNALRVLNLFKKVSDTDCELLGLNPKEARPEMFLWQ 270
Query: 277 YLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWL 456
++P PP+CIRP+V D A STEDDLT KL +IV N L ++ G P +++ +++
Sbjct: 271 FIPAPPVCIRPSVGQD--AASTEDDLTAKLGDIVQSNINLKNALMKGAPVQTIVECWDYM 328
Query: 457 QVEAARFMNSDATNLPPLASTAKPLRGISQRL 552
Q++ A ++NSD L A KP+RG QRL
Sbjct: 329 QLQIAVYINSDVPGLNK-ADLGKPIRGFVQRL 359
[93][TOP]
>UniRef100_UPI0000E22532 PREDICTED: polymerase (RNA) III (DNA directed) polypeptide A,
155kDa n=1 Tax=Pan troglodytes RepID=UPI0000E22532
Length = 1349
Score = 109 bits (272), Expect = 2e-22
Identities = 61/150 (40%), Positives = 89/150 (59%)
Frame = +1
Query: 103 AYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYL 282
++ A +N ++E L R NPL L L + AEDV L+ M G+P LIL L
Sbjct: 155 SFETAIEHNKEVEPLLGRAQVYWNPLVVLNLLNEIPAEDVPLLLMNPEAGKPSDLILTRL 214
Query: 283 PVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQV 462
VPPLCIRP+V SD +G+ EDDLTMKLTEI+ +N+ + K G ++M+ ++LQ+
Sbjct: 215 LVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGAKTQMIMEDWDFLQL 274
Query: 463 EAARFMNSDATNLPPLASTAKPLRGISQRL 552
+ A ++NS+ + +P + K RG QRL
Sbjct: 275 QCALYINSELSGIPLNMAPKKWTRGFVQRL 304
[94][TOP]
>UniRef100_C1GX38 DNA-directed RNA polymerase n=1 Tax=Paracoccidioides brasiliensis
Pb01 RepID=C1GX38_PARBA
Length = 1425
Score = 109 bits (272), Expect = 2e-22
Identities = 56/139 (40%), Positives = 84/139 (60%)
Frame = +1
Query: 136 LERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTV 315
+E+H + DDL+PLR L LF ++ ED L+ + RPE + +Y+P PP+CIRP+V
Sbjct: 192 IEKHFKKAHDDLHPLRVLKLFRRISNEDCELLGLNPAEARPEVFLWQYIPAPPVCIRPSV 251
Query: 316 CSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDAT 495
+ A STEDDLT KL +I+ N L ++N G P +++ + +Q++ A ++NSD
Sbjct: 252 GQE--AASTEDDLTAKLGDIIQSNMNLKNALNKGAPVQTIIECWDHMQLQLAVYINSDVP 309
Query: 496 NLPPLASTAKPLRGISQRL 552
L A KP+RG QRL
Sbjct: 310 GLQK-ADFGKPIRGFCQRL 327
[95][TOP]
>UniRef100_C8VPJ2 Putative uncharacterized protein n=2 Tax=Emericella nidulans
RepID=C8VPJ2_EMENI
Length = 1445
Score = 108 bits (271), Expect = 2e-22
Identities = 58/147 (39%), Positives = 89/147 (60%)
Frame = +1
Query: 112 DAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVP 291
+A+ +N ++E+H + DDLN LR L LF+ ++ D L+ + RPE + +++P P
Sbjct: 216 EARSSNPEVEKHHKKAQDDLNALRVLNLFKRISDSDCELLGLDPKEARPEMFLWQFIPAP 275
Query: 292 PLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAA 471
P+CIRP+V D A STEDDLT KL +IV N L ++ G P +M+ +++Q++ A
Sbjct: 276 PVCIRPSVGQD--ASSTEDDLTAKLGDIVQSNINLKNALLKGAPVQTIMECWDYMQLQIA 333
Query: 472 RFMNSDATNLPPLASTAKPLRGISQRL 552
++NSD L A KP+RG QRL
Sbjct: 334 VYINSDVPGLNK-ADLGKPIRGFVQRL 359
[96][TOP]
>UniRef100_B2ADZ3 DNA-directed RNA polymerase n=1 Tax=Podospora anserina
RepID=B2ADZ3_PODAN
Length = 1521
Score = 108 bits (271), Expect = 2e-22
Identities = 62/170 (36%), Positives = 93/170 (54%)
Frame = +1
Query: 43 YKKPTKTELREQAKSAAMESAYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDV 222
Y K T + ++++ AK + A+L +H R DD++PL+ L LF+ + + D
Sbjct: 195 YNKSTAQKKVAPESKIEFDASFESAKAHFAELGKHTRRAMDDMHPLKVLNLFKEINSVDC 254
Query: 223 ALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAK 402
L+ + GRPE + RYLP PPLCIRP+V + + S EDD+T KL EIV + L +
Sbjct: 255 ELLGLDPAEGRPEMFLWRYLPAPPLCIRPSVAQE--SASNEDDITTKLAEIVIYSAHLRE 312
Query: 403 SINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRL 552
++ G P LM+ E+LQ++ ++NSD L K RG QRL
Sbjct: 313 AMLKGAPLPSLMEQWEFLQLQVGMYVNSDVPGLVQ-QGFGKVTRGFCQRL 361
[97][TOP]
>UniRef100_Q2GTS6 DNA-directed RNA polymerase n=1 Tax=Chaetomium globosum
RepID=Q2GTS6_CHAGB
Length = 1290
Score = 108 bits (270), Expect = 3e-22
Identities = 60/169 (35%), Positives = 98/169 (57%), Gaps = 2/169 (1%)
Frame = +1
Query: 52 PTKTELREQAKSAAME--SAYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVA 225
P L++ A + +E +++ AK+ +LE+H + +DLNPL+ L LF A++ D
Sbjct: 62 PLDPRLKKIAPESKVEFDASFNQAKKYTPELEKHTRKAMEDLNPLKVLNLFRAISQTDCE 121
Query: 226 LIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKS 405
L+ + GRP+ + +YLP PP+CIRP+V + + S EDD+T KL+EI+ L +S
Sbjct: 122 LLGLDPSEGRPDMFLWQYLPAPPICIRPSVAQENA--SNEDDITSKLSEIILYAGHLRES 179
Query: 406 INLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRL 552
+ G ++M+ E+LQ++ ++NSD L KP+RG QRL
Sbjct: 180 LKKGVALPVIMEQWEFLQLQVGMYVNSDVPGLYQ-PGFGKPIRGFCQRL 227
[98][TOP]
>UniRef100_Q4P157 DNA-directed RNA polymerase n=1 Tax=Ustilago maydis
RepID=Q4P157_USTMA
Length = 1400
Score = 107 bits (266), Expect = 8e-22
Identities = 60/148 (40%), Positives = 86/148 (58%), Gaps = 3/148 (2%)
Frame = +1
Query: 118 KRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPL 297
K N D+ HL++ +DLNPL+ L LF+ ++ ED L+ +R GRPE I +Y+ VPP+
Sbjct: 199 KMGNGDISPHLNKAQEDLNPLKALDLFKRISDEDCELLGLRPEFGRPEEYIWQYICVPPV 258
Query: 298 CIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVL---LMDGXEWLQVEA 468
CIRP+V D + EDD+T+KLTEI+ N L + GG L+ E+LQ+
Sbjct: 259 CIRPSVAQD--GATNEDDVTIKLTEIIFTNSLLKLGLVKGGKGTTTSQLVQQWEFLQLTV 316
Query: 469 ARFMNSDATNLPPLASTAKPLRGISQRL 552
A ++NS+ +P KP RG QRL
Sbjct: 317 ALYINSELPGVPTQPG-QKPSRGFCQRL 343
[99][TOP]
>UniRef100_B4L5G1 DNA-directed RNA polymerase n=1 Tax=Drosophila mojavensis
RepID=B4L5G1_DROMO
Length = 1382
Score = 106 bits (264), Expect = 1e-21
Identities = 63/184 (34%), Positives = 101/184 (54%), Gaps = 2/184 (1%)
Frame = +1
Query: 7 GGGRGAARSINLYKKPTKTELREQAKSAAMESAYGDAKRNNADLERHLSR--VGDDLNPL 180
GG + + + P K ++ ++ ME + N DL LS ++L PL
Sbjct: 162 GGVKKGPGLLKILHDPYKGRKKDATFTSHMEEMLRSTELNR-DLNLTLSNYSAAEELTPL 220
Query: 181 RTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTM 360
L LFE + D+AL+ M + G P+ LI+ + VPP CIRP+V S+ AG+TEDDLTM
Sbjct: 221 MVLDLFEQIPQSDIALLGMCSRGAHPKHLIVTRVFVPPACIRPSVLSEVKAGTTEDDLTM 280
Query: 361 KLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLASTAKPLRGI 540
K +EI+ +N+ + + + GG L+ + ++LQ+ A + +S+ + +P + K RGI
Sbjct: 281 KQSEILLINDVIQRHMATGGKIELIHEDWDFLQLHVALYFHSEISGIPLNMAPKKTTRGI 340
Query: 541 SQRL 552
QRL
Sbjct: 341 VQRL 344
[100][TOP]
>UniRef100_B4MT76 DNA-directed RNA polymerase n=1 Tax=Drosophila willistoni
RepID=B4MT76_DROWI
Length = 1381
Score = 105 bits (263), Expect = 2e-21
Identities = 58/144 (40%), Positives = 88/144 (61%), Gaps = 2/144 (1%)
Frame = +1
Query: 127 NADLERHLSR--VGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLC 300
N DL LS ++L PL L LFE + +DV L+ M + G P+ LI+ + VPP C
Sbjct: 201 NRDLNLTLSNYSTAEELTPLMVLDLFEQIPQKDVPLLGMCSRGAHPKHLIVTRVFVPPAC 260
Query: 301 IRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFM 480
IRP+V SD AG+TEDDLTMK +EI+ +N+ + + + GG L+ + ++LQ+ A +
Sbjct: 261 IRPSVLSDVKAGTTEDDLTMKQSEILLINDVIQRHMATGGKIELIHEDWDFLQLHVALYF 320
Query: 481 NSDATNLPPLASTAKPLRGISQRL 552
+S+ + +P + K +RGI QRL
Sbjct: 321 HSEISGIPLNMAPKKTMRGIVQRL 344
[101][TOP]
>UniRef100_B4JN80 DNA-directed RNA polymerase n=1 Tax=Drosophila grimshawi
RepID=B4JN80_DROGR
Length = 1303
Score = 105 bits (263), Expect = 2e-21
Identities = 58/144 (40%), Positives = 88/144 (61%), Gaps = 2/144 (1%)
Frame = +1
Query: 127 NADLERHLSR--VGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLC 300
N DL + LS ++L PL L LFE + DVAL+ M + G P+ LI+ + VPP C
Sbjct: 201 NRDLNQTLSNYSAAEELTPLMVLDLFEQIPQSDVALLGMCSRGAHPKHLIVTRVFVPPAC 260
Query: 301 IRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFM 480
IRP+V S+ AG+TEDDLTMK +EI+ +N+ + + + GG L+ + ++LQ+ A +
Sbjct: 261 IRPSVLSEVKAGTTEDDLTMKQSEILLINDVIQRHMATGGKIELIHEDWDFLQLHVALYF 320
Query: 481 NSDATNLPPLASTAKPLRGISQRL 552
+S+ + +P + K RGI QRL
Sbjct: 321 HSEISGIPLNMAPKKTTRGIVQRL 344
[102][TOP]
>UniRef100_C5KZ53 DNA-directed RNA polymerase n=1 Tax=Perkinsus marinus ATCC 50983
RepID=C5KZ53_9ALVE
Length = 1719
Score = 105 bits (262), Expect = 2e-21
Identities = 60/162 (37%), Positives = 93/162 (57%), Gaps = 1/162 (0%)
Frame = +1
Query: 70 REQAKSAAMESAYGDAKRNNADLERHLSRVG-DDLNPLRTLALFEAMTAEDVALIDMRAV 246
++QAK + Y DA NN ++ HLS+V +DL PL L L M D ++ +
Sbjct: 159 KDQAK-VEYQQQYSDAVNNNPEIGNHLSKVAYEDLTPLHLLPLLAKMPPSDQEMLKLPP- 216
Query: 247 GGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPA 426
+PERL++ ++PV P+CIRP+V AG+ EDDL+++ ++IV N + +++ GG
Sbjct: 217 --QPERLVVTHVPVSPVCIRPSV-QIGDAGTQEDDLSVQTSDIVATNNNIKATLSRGGTL 273
Query: 427 VLLMDGXEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRL 552
+ + +WL + A MNS+AT L A T KP+R I RL
Sbjct: 274 KQVAEQWQWLSAQVALMMNSEATGLAAAAPTTKPIRSICSRL 315
[103][TOP]
>UniRef100_B4MAW8 DNA-directed RNA polymerase n=1 Tax=Drosophila virilis
RepID=B4MAW8_DROVI
Length = 1044
Score = 105 bits (262), Expect = 2e-21
Identities = 63/184 (34%), Positives = 101/184 (54%), Gaps = 2/184 (1%)
Frame = +1
Query: 7 GGGRGAARSINLYKKPTKTELREQAKSAAMESAYGDAKRNNADLERHLSR--VGDDLNPL 180
GG + + + P K ++ ++ M+ + N DL LS ++L PL
Sbjct: 162 GGVKKGPGLLKILHDPYKGRKKDAVFTSHMDQMLRSTELNR-DLNLTLSNYSAAEELTPL 220
Query: 181 RTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTM 360
L LFE + DVAL+ M + G P+ LI+ + VPP CIRP+V S+ AG+TEDDLTM
Sbjct: 221 MVLDLFEQIPQSDVALLGMCSRGAHPKHLIVTRVFVPPACIRPSVLSEVKAGTTEDDLTM 280
Query: 361 KLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLASTAKPLRGI 540
K +EI+ +N+ + + + GG L+ + ++LQ+ A + +S+ + +P + K RGI
Sbjct: 281 KQSEILLINDVIQRHMATGGKIELIHEDWDFLQLHVALYFHSEISGIPLNMAPKKTTRGI 340
Query: 541 SQRL 552
QRL
Sbjct: 341 VQRL 344
[104][TOP]
>UniRef100_Q29CI9 DNA-directed RNA polymerase n=1 Tax=Drosophila pseudoobscura
pseudoobscura RepID=Q29CI9_DROPS
Length = 644
Score = 105 bits (261), Expect = 3e-21
Identities = 58/144 (40%), Positives = 87/144 (60%), Gaps = 2/144 (1%)
Frame = +1
Query: 127 NADLERHLSR--VGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLC 300
N DL LS ++L PL L LFE + DVAL+ M + G P+ LI+ + VPP C
Sbjct: 201 NRDLNLTLSNYSTAEELTPLMVLDLFEQIPQSDVALLGMCSRGAHPKHLIVTRVFVPPAC 260
Query: 301 IRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFM 480
IRP+V S+ AG+TEDDLTMK +EI+ +N+ + + + GG L+ + ++LQ+ A +
Sbjct: 261 IRPSVLSEVKAGTTEDDLTMKQSEILLINDVIQRHMATGGKIELIYEDWDFLQLHVALYF 320
Query: 481 NSDATNLPPLASTAKPLRGISQRL 552
+S+ + +P + K RGI QRL
Sbjct: 321 HSEISGIPINMAPKKTTRGIVQRL 344
[105][TOP]
>UniRef100_C5KF34 DNA-directed RNA polymerase (Fragment) n=1 Tax=Perkinsus marinus
ATCC 50983 RepID=C5KF34_9ALVE
Length = 465
Score = 105 bits (261), Expect = 3e-21
Identities = 60/162 (37%), Positives = 93/162 (57%), Gaps = 1/162 (0%)
Frame = +1
Query: 70 REQAKSAAMESAYGDAKRNNADLERHLSRVG-DDLNPLRTLALFEAMTAEDVALIDMRAV 246
++QAK + Y DA NN ++ HLS+V +DL PL L L M D ++ +
Sbjct: 68 KDQAK-VEYQQQYSDAVSNNPEIGNHLSKVAYEDLTPLHLLPLLAKMPPSDQEMLKLPP- 125
Query: 247 GGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPA 426
+PERL++ ++PV P+CIRP+V AG+ EDDL+++ ++IV N + +++ GG
Sbjct: 126 --QPERLVVTHVPVSPVCIRPSV-QIGDAGTQEDDLSVQTSDIVATNNNIKATLSRGGTL 182
Query: 427 VLLMDGXEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRL 552
+ + +WL + A MNS+AT L A T KP+R I RL
Sbjct: 183 KQVAEQWQWLSAQVALMMNSEATGLAAAAPTTKPIRSICSRL 224
[106][TOP]
>UniRef100_B4HCC5 DNA-directed RNA polymerase n=1 Tax=Drosophila persimilis
RepID=B4HCC5_DROPE
Length = 968
Score = 105 bits (261), Expect = 3e-21
Identities = 58/144 (40%), Positives = 87/144 (60%), Gaps = 2/144 (1%)
Frame = +1
Query: 127 NADLERHLSR--VGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLC 300
N DL LS ++L PL L LFE + DVAL+ M + G P+ LI+ + VPP C
Sbjct: 201 NRDLNLTLSNYSTAEELTPLMVLDLFEQIPQSDVALLGMCSRGAHPKHLIVTRVFVPPAC 260
Query: 301 IRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFM 480
IRP+V S+ AG+TEDDLTMK +EI+ +N+ + + + GG L+ + ++LQ+ A +
Sbjct: 261 IRPSVLSEVKAGTTEDDLTMKQSEILLINDVIQRHMATGGKIELIYEDWDFLQLHVALYF 320
Query: 481 NSDATNLPPLASTAKPLRGISQRL 552
+S+ + +P + K RGI QRL
Sbjct: 321 HSEISGIPINMAPKKTTRGIVQRL 344
[107][TOP]
>UniRef100_B0DK21 DNA-directed RNA polymerase n=1 Tax=Laccaria bicolor S238N-H82
RepID=B0DK21_LACBS
Length = 1397
Score = 105 bits (261), Expect = 3e-21
Identities = 64/169 (37%), Positives = 93/169 (55%), Gaps = 1/169 (0%)
Frame = +1
Query: 49 KPTKTELREQAKSAAMESAYGDAKRNNADLERHLSR-VGDDLNPLRTLALFEAMTAEDVA 225
K T EL K+ + A +L ++++ V +DLN L+ L LF ++ ED
Sbjct: 179 KKTADELERWKKT------FAPALEAQKELAMYINKAVHEDLNALKVLDLFRRISDEDCE 232
Query: 226 LIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKS 405
L+ + GRPE+ I +YL VPP+CIRP+V D S EDDLT+KLTEIV N + +
Sbjct: 233 LLGLHPDWGRPEQFIWQYLSVPPVCIRPSVAQD--GASNEDDLTVKLTEIVFTNALIRQG 290
Query: 406 INLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRL 552
+ G P M+ E+LQ+ A ++NS+ +P KP+RG QRL
Sbjct: 291 LAKGSPTPQFMEQWEFLQLSVAMYINSELPGVPSQPG-QKPIRGFVQRL 338
[108][TOP]
>UniRef100_B3MLS5 DNA-directed RNA polymerase n=1 Tax=Drosophila ananassae
RepID=B3MLS5_DROAN
Length = 1301
Score = 104 bits (260), Expect = 4e-21
Identities = 58/144 (40%), Positives = 87/144 (60%), Gaps = 2/144 (1%)
Frame = +1
Query: 127 NADLERHLSR--VGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLC 300
N DL LS ++L PL L LFE + DVAL+ M + G P+ LI+ + VPP C
Sbjct: 201 NRDLNATLSSYSTAEELTPLMVLDLFEQIPQSDVALLGMCSRGAHPKNLIVTRVFVPPAC 260
Query: 301 IRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFM 480
IRP+V S+ AG+TEDDLTMK +EI+ +N+ + + + GG L+ + ++LQ+ A +
Sbjct: 261 IRPSVLSEVKAGTTEDDLTMKQSEILLINDVIQRHMATGGKIELIHEDWDFLQLHVALYF 320
Query: 481 NSDATNLPPLASTAKPLRGISQRL 552
+S+ + +P + K RGI QRL
Sbjct: 321 HSEISGIPINMAPKKTTRGIVQRL 344
[109][TOP]
>UniRef100_Q16SE0 DNA-directed RNA polymerase n=1 Tax=Aedes aegypti
RepID=Q16SE0_AEDAE
Length = 1298
Score = 102 bits (255), Expect = 1e-20
Identities = 52/129 (40%), Positives = 81/129 (62%)
Frame = +1
Query: 166 DLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTE 345
+LNP+ L LF+ + D+ L+ M + P LI+ + VPP+CIRP+V S+ AG+TE
Sbjct: 219 ELNPVEVLDLFKNIPKSDIPLLGMTSPESNPADLIVTRVFVPPVCIRPSVVSEVKAGTTE 278
Query: 346 DDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLASTAK 525
DDLTMK +EI+ +++ +AK + GG L+ + ++LQ+ A + NS+ + +P K
Sbjct: 279 DDLTMKQSEILLISDVIAKHMMSGGKIELIQEDWDYLQLHCALYFNSELSGIPLSLMPKK 338
Query: 526 PLRGISQRL 552
P RGI QRL
Sbjct: 339 PTRGIVQRL 347
[110][TOP]
>UniRef100_Q16PD2 DNA-directed RNA polymerase n=1 Tax=Aedes aegypti
RepID=Q16PD2_AEDAE
Length = 1298
Score = 102 bits (255), Expect = 1e-20
Identities = 52/129 (40%), Positives = 81/129 (62%)
Frame = +1
Query: 166 DLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTE 345
+LNP+ L LF+ + D+ L+ M + P LI+ + VPP+CIRP+V S+ AG+TE
Sbjct: 219 ELNPVEVLDLFKNIPKSDIPLLGMTSPESNPADLIVTRVFVPPVCIRPSVVSEVKAGTTE 278
Query: 346 DDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLASTAK 525
DDLTMK +EI+ +++ +AK + GG L+ + ++LQ+ A + NS+ + +P K
Sbjct: 279 DDLTMKQSEILLISDVIAKHMMSGGKIELIQEDWDYLQLHCALYFNSELSGIPLSLMPKK 338
Query: 526 PLRGISQRL 552
P RGI QRL
Sbjct: 339 PTRGIVQRL 347
[111][TOP]
>UniRef100_B0WFY1 DNA-directed RNA polymerase n=1 Tax=Culex quinquefasciatus
RepID=B0WFY1_CULQU
Length = 1303
Score = 102 bits (254), Expect = 2e-20
Identities = 52/129 (40%), Positives = 80/129 (62%)
Frame = +1
Query: 166 DLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTE 345
+LNPL L LF+ + D+ L+ M + P LI+ + VPP+CIRP+V S+ AG+TE
Sbjct: 219 ELNPLEVLDLFKNIPKSDIPLLGMTSPESNPADLIVTRVFVPPVCIRPSVVSEVKAGTTE 278
Query: 346 DDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLASTAK 525
DDLTMK +EI+ +++ + K + GG L+ + ++LQ+ A + NS+ + +P K
Sbjct: 279 DDLTMKQSEILLISDVITKHMMSGGKIELIQEDWDYLQLHCALYFNSELSGIPLSLMPKK 338
Query: 526 PLRGISQRL 552
P RGI QRL
Sbjct: 339 PTRGIVQRL 347
[112][TOP]
>UniRef100_UPI000186E437 DNA-directed RNA polymerase III largest subunit, putative n=1
Tax=Pediculus humanus corporis RepID=UPI000186E437
Length = 1364
Score = 102 bits (253), Expect = 2e-20
Identities = 57/151 (37%), Positives = 86/151 (56%), Gaps = 1/151 (0%)
Frame = +1
Query: 103 AYGDAKRNNADLERHL-SRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRY 279
AY + + +LE + S V L PL L L E + +DV L+ M P L+L
Sbjct: 196 AYNNVLEYDRELESVIASGVAFILTPLDVLNLLERIPEDDVCLLCMNPAMVHPRDLMLTR 255
Query: 280 LPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQ 459
LPVPPLC+RP+V S+ +G+ EDDLTMKL+EI+ +N+ + K G ++ + ++LQ
Sbjct: 256 LPVPPLCVRPSVISELKSGTNEDDLTMKLSEIIFINDVIQKHRQSGAKVHMINEDWDFLQ 315
Query: 460 VEAARFMNSDATNLPPLASTAKPLRGISQRL 552
+ A ++NS+ T +P K RG+ QRL
Sbjct: 316 LHCALYINSETTGIPLSMQPKKATRGLVQRL 346
[113][TOP]
>UniRef100_B8C4M1 DNA-directed RNA polymerase n=1 Tax=Thalassiosira pseudonana
CCMP1335 RepID=B8C4M1_THAPS
Length = 1422
Score = 102 bits (253), Expect = 2e-20
Identities = 63/174 (36%), Positives = 93/174 (53%), Gaps = 7/174 (4%)
Frame = +1
Query: 52 PTKTELREQAKSAAMESAYGD-------AKRNNADLERHLSRVGDDLNPLRTLALFEAMT 210
PT + E+ K ME D A N ++ L +DL P R L LF+ MT
Sbjct: 195 PTLKIIHERYKGRHMEDEVEDLLQSLQGAMITNLEINHALRVAVEDLLPTRVLELFKGMT 254
Query: 211 AEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNE 390
+D ++ + GRPE LIL ++ VPP+ IRP+V D GS EDDLT+KL E++++N
Sbjct: 255 DDDCEVLWVAPWIGRPENLILEHILVPPVPIRPSVAMDVGGGSNEDDLTVKLLEVINVNV 314
Query: 391 ALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRL 552
AL ++ +M+G + LQ + A+++N D L KP+RG+ QRL
Sbjct: 315 ALELNMTRNPQTKTIMEGWDVLQSQVAQYINGDMPGLKK-EMGHKPIRGLCQRL 367
[114][TOP]
>UniRef100_A9UN86 DNA-directed RNA polymerase (Fragment) n=1 Tax=Drosophila
melanogaster RepID=A9UN86_DROME
Length = 1410
Score = 101 bits (251), Expect = 4e-20
Identities = 56/146 (38%), Positives = 86/146 (58%), Gaps = 2/146 (1%)
Frame = +1
Query: 121 RNNADLERHLSR--VGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPP 294
+ N DL L ++L PL L LFE + DVAL+ M + P+ LI+ + VPP
Sbjct: 226 QTNRDLNSTLGNYSTAEELTPLMVLDLFEQIPQRDVALLGMCSHDAHPKHLIVTRVFVPP 285
Query: 295 LCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAAR 474
CIRP+V S+ AG+TEDDLTMK +EI+ +N+ + + + GG L+ + ++LQ+ A
Sbjct: 286 ACIRPSVLSEVKAGTTEDDLTMKQSEILLINDVIQRHMATGGKIELIHEDWDFLQLHVAL 345
Query: 475 FMNSDATNLPPLASTAKPLRGISQRL 552
+ +S+ + +P + K RGI QRL
Sbjct: 346 YFHSEISGIPINMAPKKTTRGIVQRL 371
[115][TOP]
>UniRef100_A8PJK8 DNA-directed RNA polymerase n=1 Tax=Brugia malayi
RepID=A8PJK8_BRUMA
Length = 1404
Score = 101 bits (251), Expect = 4e-20
Identities = 57/154 (37%), Positives = 90/154 (58%), Gaps = 3/154 (1%)
Frame = +1
Query: 100 SAYGDAKRNNADLERHLSRVGDDL-NPLRTLALFEAMTAEDVALIDMRAVGG--RPERLI 270
S Y A + N +L+ L + L +PL+ LF + ED+ L+ +R+ P +I
Sbjct: 189 SEYVYAAQENKELQNLLPKTKFTLLDPLQVQILFNKIEKEDIPLLMVRSADTPKHPSDVI 248
Query: 271 LRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXE 450
L +PVPP CIRP+V S+ +G+TEDD+TMKL+EI+ +N+ + K G P + + +
Sbjct: 249 LTRIPVPPCCIRPSVVSEVKSGTTEDDITMKLSEIMLINDVIEKHKKEGSPTKTISETWD 308
Query: 451 WLQVEAARFMNSDATNLPPLASTAKPLRGISQRL 552
LQV+ A ++NS+ + LPP + RG +QRL
Sbjct: 309 HLQVQCALYINSELSGLPPDMQPKRTTRGFTQRL 342
[116][TOP]
>UniRef100_A8JUY3 DNA-directed RNA polymerase n=1 Tax=Drosophila melanogaster
RepID=A8JUY3_DROME
Length = 1376
Score = 101 bits (251), Expect = 4e-20
Identities = 56/146 (38%), Positives = 86/146 (58%), Gaps = 2/146 (1%)
Frame = +1
Query: 121 RNNADLERHLSR--VGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPP 294
+ N DL L ++L PL L LFE + DVAL+ M + P+ LI+ + VPP
Sbjct: 199 QTNRDLNSTLGNYSTAEELTPLMVLDLFEQIPQRDVALLGMCSHDAHPKHLIVTRVFVPP 258
Query: 295 LCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAAR 474
CIRP+V S+ AG+TEDDLTMK +EI+ +N+ + + + GG L+ + ++LQ+ A
Sbjct: 259 ACIRPSVLSEVKAGTTEDDLTMKQSEILLINDVIQRHMATGGKIELIHEDWDFLQLHVAL 318
Query: 475 FMNSDATNLPPLASTAKPLRGISQRL 552
+ +S+ + +P + K RGI QRL
Sbjct: 319 YFHSEISGIPINMAPKKTTRGIVQRL 344
[117][TOP]
>UniRef100_B4PX62 DNA-directed RNA polymerase n=1 Tax=Drosophila yakuba
RepID=B4PX62_DROYA
Length = 1383
Score = 100 bits (250), Expect = 6e-20
Identities = 56/144 (38%), Positives = 85/144 (59%), Gaps = 2/144 (1%)
Frame = +1
Query: 127 NADLERHLSR--VGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLC 300
N DL L ++L PL L LFE + DVAL+ M + P+ LI+ + VPP C
Sbjct: 201 NRDLNSTLGNYSTAEELTPLMVLDLFEQIPQRDVALLGMCSHDAHPKHLIVTRVFVPPAC 260
Query: 301 IRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFM 480
IRP+V S+ AG+TEDDLTMK +EI+ +N+ + + + GG L+ + ++LQ+ A +
Sbjct: 261 IRPSVLSEVKAGTTEDDLTMKQSEILLINDVIQRHMATGGKIELIHEDWDFLQLHVALYF 320
Query: 481 NSDATNLPPLASTAKPLRGISQRL 552
+S+ + +P + K RGI QRL
Sbjct: 321 HSEISGIPINMAPKKTTRGIVQRL 344
[118][TOP]
>UniRef100_B3NXK5 DNA-directed RNA polymerase n=1 Tax=Drosophila erecta
RepID=B3NXK5_DROER
Length = 1383
Score = 100 bits (250), Expect = 6e-20
Identities = 56/144 (38%), Positives = 85/144 (59%), Gaps = 2/144 (1%)
Frame = +1
Query: 127 NADLERHLSR--VGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLC 300
N DL L ++L PL L LFE + DVAL+ M + P+ LI+ + VPP C
Sbjct: 201 NRDLNSTLGNYSTAEELTPLMVLDLFEQIPQRDVALLGMCSHDAHPKHLIVTRVFVPPAC 260
Query: 301 IRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFM 480
IRP+V S+ AG+TEDDLTMK +EI+ +N+ + + + GG L+ + ++LQ+ A +
Sbjct: 261 IRPSVLSEVKAGTTEDDLTMKQSEILLINDVIQRHMATGGKIELIHEDWDFLQLHVALYF 320
Query: 481 NSDATNLPPLASTAKPLRGISQRL 552
+S+ + +P + K RGI QRL
Sbjct: 321 HSEISGIPINMAPKKTTRGIVQRL 344
[119][TOP]
>UniRef100_Q7RXJ6 DNA-directed RNA polymerase n=1 Tax=Neurospora crassa
RepID=Q7RXJ6_NEUCR
Length = 1474
Score = 100 bits (248), Expect = 9e-20
Identities = 53/141 (37%), Positives = 82/141 (58%)
Frame = +1
Query: 43 YKKPTKTELREQAKSAAMESAYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDV 222
+ K T + AA +S++ AK DLE+H + DD++PL+ L LF+ +TAED
Sbjct: 188 FNKSTAQKKVPPVAKAAFDSSFIQAKTFTPDLEKHSKKAMDDMDPLKVLKLFKKITAEDC 247
Query: 223 ALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAK 402
L+ + GRPE + +YLP PP+CIRP+V A S EDD+T KL+EI+ L +
Sbjct: 248 ELLGLNPSEGRPEMFLWQYLPAPPICIRPSV--QQEAASNEDDITSKLSEIILYAGHLRE 305
Query: 403 SINLGGPAVLLMDGXEWLQVE 465
S+ G +M+ E++Q++
Sbjct: 306 SLLKGAALNTIMEQWEFIQLQ 326
[120][TOP]
>UniRef100_Q7PMU6 DNA-directed RNA polymerase n=1 Tax=Anopheles gambiae
RepID=Q7PMU6_ANOGA
Length = 1379
Score = 97.8 bits (242), Expect = 5e-19
Identities = 51/134 (38%), Positives = 79/134 (58%)
Frame = +1
Query: 151 SRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPS 330
S + +LN + L LF + DV L+ M + P LI+ + VPP+CIRP+V S+
Sbjct: 215 SSLSKELNAVEVLDLFRNIPKSDVPLLGMTSTYSNPADLIVTRVFVPPVCIRPSVVSEVK 274
Query: 331 AGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPL 510
AG+TEDDLTMK +EI+ +++ + K + G L+ + ++LQ+ A + NS+ + +P
Sbjct: 275 AGTTEDDLTMKQSEILLISDVITKHMMTNGKIELIQEDWDYLQLHCALYFNSELSGIPLS 334
Query: 511 ASTAKPLRGISQRL 552
KP RGI QRL
Sbjct: 335 LMPKKPTRGIVQRL 348
[121][TOP]
>UniRef100_B8MLB5 DNA-directed RNA polymerase n=1 Tax=Talaromyces stipitatus ATCC
10500 RepID=B8MLB5_TALSN
Length = 1441
Score = 97.8 bits (242), Expect = 5e-19
Identities = 54/170 (31%), Positives = 87/170 (51%)
Frame = +1
Query: 43 YKKPTKTELREQAKSAAMESAYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDV 222
Y + T + +++ +A+ +N D++R + DDL+ LR + LF+ +T D
Sbjct: 192 YNQSTAMKKVAPISKIVFDNSLTEARASNPDVDRFYKKAQDDLHALRVMNLFKKITNADC 251
Query: 223 ALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAK 402
L+ + RPE + +Y+P PP CIRP+V D S EDDLT KL +IV N L
Sbjct: 252 ELLGLDPTEVRPETFLWQYIPAPPNCIRPSVSQD--GASNEDDLTAKLGDIVQSNITLRN 309
Query: 403 SINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRL 552
++ G P LM+ +++ ++ A ++N D L KP R + RL
Sbjct: 310 NLRKGAPVPTLMECWDYMTLQIAIYINGDVPGLK--GEAGKPTRSLVSRL 357
[122][TOP]
>UniRef100_B6QI35 DNA-directed RNA polymerase n=1 Tax=Penicillium marneffei ATCC
18224 RepID=B6QI35_PENMQ
Length = 1439
Score = 97.8 bits (242), Expect = 5e-19
Identities = 52/152 (34%), Positives = 83/152 (54%)
Frame = +1
Query: 97 ESAYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILR 276
+++ +A+ +N D++R + DDL+ LR + LF+ +T D L+ + RPE + +
Sbjct: 209 DNSLAEARASNPDVDRFYKKAQDDLHALRVMNLFKKITNADCELLGLDPTEVRPETFLWQ 268
Query: 277 YLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWL 456
Y+P PP CIRP+V D S EDDLT KL +IV N L ++ G P LM+ +++
Sbjct: 269 YIPAPPNCIRPSVSQD--GASNEDDLTAKLGDIVQSNITLRNNLRKGAPVPTLMECWDYM 326
Query: 457 QVEAARFMNSDATNLPPLASTAKPLRGISQRL 552
++ A ++N D L KP R + RL
Sbjct: 327 TLQIAIYINGDVPGLK--GEAGKPTRSLVSRL 356
[123][TOP]
>UniRef100_C4M626 DNA-directed RNA polymerase n=1 Tax=Entamoeba histolytica HM-1:IMSS
RepID=C4M626_ENTHI
Length = 1379
Score = 97.4 bits (241), Expect = 6e-19
Identities = 55/170 (32%), Positives = 88/170 (51%)
Frame = +1
Query: 43 YKKPTKTELREQAKSAAMESAYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDV 222
++ PT TE+ E + ++ + + D+ ++ +DL+P + L++F ++ ED+
Sbjct: 199 HRDPTITEMNE------FYDGFEESIKLDKDINAFINNAQEDLDPRKVLSIFRSLIREDI 252
Query: 223 ALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAK 402
+D PE +IL +PVPP+ IRP+V D S EDDLT +L EI+ N+ + +
Sbjct: 253 ETMDFDPDNAPPENMILTSVPVPPIAIRPSVAMDGGNASNEDDLTTQLKEIMECNDRIKE 312
Query: 403 SINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRL 552
I G D + L V + F+NS+ LP KPLR I QRL
Sbjct: 313 MIKRGASPYQYYDSWDQLTVAVSMFINSE---LPGCDDKGKPLRAICQRL 359
[124][TOP]
>UniRef100_UPI000022105F Hypothetical protein CBG05787 n=1 Tax=Caenorhabditis briggsae AF16
RepID=UPI000022105F
Length = 1402
Score = 97.1 bits (240), Expect = 8e-19
Identities = 52/129 (40%), Positives = 79/129 (61%), Gaps = 1/129 (0%)
Frame = +1
Query: 169 LNPLRTLALFEAMTAEDVALIDMRAVGGR-PERLILRYLPVPPLCIRPTVCSDPSAGSTE 345
LNPL LF + D+ ++ +R+ + P L+L +PVPP+CIRP+V S+ +G+TE
Sbjct: 213 LNPLFVQKLFANIKEADIPVLMVRSGEEKHPNDLLLTRMPVPPVCIRPSVVSEVKSGTTE 272
Query: 346 DDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLASTAK 525
DD+TMKL EI+ N+ L K G PA L + E LQ++ A ++NS+ + LPP +
Sbjct: 273 DDVTMKLMEIMLTNDVLKKHKRDGAPAKTLFETWEHLQIQCALYINSEMSGLPPDMQPKR 332
Query: 526 PLRGISQRL 552
+R +QRL
Sbjct: 333 AMRAFTQRL 341
[125][TOP]
>UniRef100_Q18566 DNA-directed RNA polymerase n=1 Tax=Caenorhabditis elegans
RepID=Q18566_CAEEL
Length = 1400
Score = 97.1 bits (240), Expect = 8e-19
Identities = 52/129 (40%), Positives = 79/129 (61%), Gaps = 1/129 (0%)
Frame = +1
Query: 169 LNPLRTLALFEAMTAEDVALIDMRAVGGR-PERLILRYLPVPPLCIRPTVCSDPSAGSTE 345
LNPL LF + D+ ++ +R+ + P L+L +PVPP+CIRP+V S+ AG+TE
Sbjct: 213 LNPLFVQKLFSNIKEGDIPVLMVRSGEEKHPNDLLLTRMPVPPVCIRPSVVSEVKAGTTE 272
Query: 346 DDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLASTAK 525
DD+TMKL EI+ N+ L K G P+ L + E LQ++ A ++NS+ + LPP +
Sbjct: 273 DDVTMKLMEIMLTNDVLKKHKRDGAPSKTLFETWEHLQIQCALYINSEMSGLPPDMQPKR 332
Query: 526 PLRGISQRL 552
+R +QRL
Sbjct: 333 AMRAFTQRL 341
[126][TOP]
>UniRef100_UPI00015B5AFA PREDICTED: hypothetical protein n=1 Tax=Nasonia vitripennis
RepID=UPI00015B5AFA
Length = 1372
Score = 95.9 bits (237), Expect = 2e-18
Identities = 60/170 (35%), Positives = 88/170 (51%)
Frame = +1
Query: 43 YKKPTKTELREQAKSAAMESAYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDV 222
YK ++ Q K A D K + L+ L + LNPL + L E + D+
Sbjct: 168 YKNKKPSDPIVQTKLAEYHKVVEDNKELESILQSGLISI---LNPLEVIGLLERIPERDI 224
Query: 223 ALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAK 402
L+ M P LIL +PVPP+ IRP++ SD AG+ ED+LTMKL+EI+ +NEA+
Sbjct: 225 PLLLMNPQCSVPRDLILTRIPVPPISIRPSIVSDLKAGTNEDNLTMKLSEILLINEAIQI 284
Query: 403 SINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRL 552
G + E+LQ+ A ++NS+ + +PP K RG+ QRL
Sbjct: 285 HRQRGLKIQNYTEDWEFLQLHVALYINSEMSGIPPSMQPQKAGRGLVQRL 334
[127][TOP]
>UniRef100_B4H9Z6 DNA-directed RNA polymerase n=1 Tax=Drosophila persimilis
RepID=B4H9Z6_DROPE
Length = 424
Score = 95.9 bits (237), Expect = 2e-18
Identities = 50/122 (40%), Positives = 77/122 (63%)
Frame = +1
Query: 187 LALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKL 366
L LFE + DVAL+ M + G P+ LI+ + VPP CIRP+V S+ AG+TEDDLTMK
Sbjct: 3 LDLFEQIPQSDVALLGMCSRGAHPKHLIVTRVFVPPACIRPSVLSEVKAGTTEDDLTMKQ 62
Query: 367 TEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLASTAKPLRGISQ 546
+EI+ +N+ + + + GG L+ + ++LQ+ A + +S+ + +P + K RGI Q
Sbjct: 63 SEILLINDVIQRHMATGGKIELIYEDWDFLQLHVALYFHSEISGIPINMAPKKTTRGIVQ 122
Query: 547 RL 552
RL
Sbjct: 123 RL 124
[128][TOP]
>UniRef100_UPI0000D57400 PREDICTED: similar to AGAP004703-PA n=1 Tax=Tribolium castaneum
RepID=UPI0000D57400
Length = 1390
Score = 95.1 bits (235), Expect = 3e-18
Identities = 50/134 (37%), Positives = 79/134 (58%)
Frame = +1
Query: 151 SRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPS 330
S V L P+ L LFE + D+ L+ M + +P+ LI + VPP+ IRP+V SD
Sbjct: 222 SAVSQILTPIDVLKLFERIPQSDIPLLAMDSRRSQPKDLIFTRMLVPPVSIRPSVVSDLK 281
Query: 331 AGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPL 510
AG+ EDDLTM+ +EI+ +N+ + K G + +G ++LQ++ A ++NS+ + +P
Sbjct: 282 AGTNEDDLTMRQSEIIFINDVIKKHKLSGASVNMYQEGWDFLQLQTALYINSELSGIPLA 341
Query: 511 ASTAKPLRGISQRL 552
KP RG+ QRL
Sbjct: 342 MMPKKPGRGLVQRL 355
[129][TOP]
>UniRef100_B7G2E6 DNA-directed RNA polymerase n=1 Tax=Phaeodactylum tricornutum CCAP
1055/1 RepID=B7G2E6_PHATR
Length = 1281
Score = 94.7 bits (234), Expect = 4e-18
Identities = 53/131 (40%), Positives = 83/131 (63%), Gaps = 1/131 (0%)
Frame = +1
Query: 163 DDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGST 342
+DL P R L +F ++ +D ++ + + GRPE LIL+ + VPP+ IRP+V D GS
Sbjct: 176 EDLLPTRALEIFTHISDDDCEVLWIDPLIGRPETLILQSILVPPVPIRPSVAMDVGGGSN 235
Query: 343 EDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLP-PLAST 519
EDDLT+KL EI+ +N AL ++ G +M+ ++LQV+ A+++N + L P+ S
Sbjct: 236 EDDLTVKLQEIIDVNVALELALMKGPQTRTIMEEWDFLQVQVAQYINGEMPGLQRPIGS- 294
Query: 520 AKPLRGISQRL 552
KP+RG+ QRL
Sbjct: 295 -KPMRGLCQRL 304
[130][TOP]
>UniRef100_B0EG66 DNA-directed RNA polymerase n=1 Tax=Entamoeba dispar SAW760
RepID=B0EG66_ENTDI
Length = 1379
Score = 94.7 bits (234), Expect = 4e-18
Identities = 54/170 (31%), Positives = 86/170 (50%)
Frame = +1
Query: 43 YKKPTKTELREQAKSAAMESAYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDV 222
++ T TE+ E + ++ + + D+ + +DL+P + L++F ++ ED+
Sbjct: 199 HRDATITEMNE------FYDGFEESIKLDKDINAFVDNAQEDLDPRKVLSIFRSLIREDI 252
Query: 223 ALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAK 402
+D PE +IL +PVPP+ IRP+V D S EDDLT +L EI+ N+ + +
Sbjct: 253 ETMDFDPDNAPPENMILTSVPVPPIAIRPSVAMDGGNASNEDDLTTQLKEIMECNDRIKE 312
Query: 403 SINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRL 552
I G D + L + + F+NSD LP KPLR I QRL
Sbjct: 313 MIKRGASPYQYYDSWDQLTIAVSMFINSD---LPGCDDKGKPLRSICQRL 359
[131][TOP]
>UniRef100_UPI00019836CE PREDICTED: hypothetical protein n=1 Tax=Vitis vinifera
RepID=UPI00019836CE
Length = 1383
Score = 94.0 bits (232), Expect = 7e-18
Identities = 50/132 (37%), Positives = 78/132 (59%)
Frame = +1
Query: 157 VGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAG 336
V D LNP++ L+LF+ M ED L+++ RPE+L+L + VPP+ IRP+V D
Sbjct: 216 VVDILNPVKVLSLFKRMMDEDCDLLNLAE---RPEKLVLTNIGVPPIAIRPSVFMDGGTQ 272
Query: 337 STEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLAS 516
S E+D+T +L I+ N +L + + G + G ++LQ+E A+++NSD +P
Sbjct: 273 SNENDVTERLKRIIQANASLHQELQDTGSTSKCLAGWDYLQIEVAQYINSDVRGVPLAMQ 332
Query: 517 TAKPLRGISQRL 552
A+PL G QRL
Sbjct: 333 AARPLSGFVQRL 344
[132][TOP]
>UniRef100_A7NZA4 DNA-directed RNA polymerase n=1 Tax=Vitis vinifera
RepID=A7NZA4_VITVI
Length = 1370
Score = 94.0 bits (232), Expect = 7e-18
Identities = 50/132 (37%), Positives = 78/132 (59%)
Frame = +1
Query: 157 VGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAG 336
V D LNP++ L+LF+ M ED L+++ RPE+L+L + VPP+ IRP+V D
Sbjct: 216 VVDILNPVKVLSLFKRMMDEDCDLLNLAE---RPEKLVLTNIGVPPIAIRPSVFMDGGTQ 272
Query: 337 STEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLAS 516
S E+D+T +L I+ N +L + + G + G ++LQ+E A+++NSD +P
Sbjct: 273 SNENDVTERLKRIIQANASLHQELQDTGSTSKCLAGWDYLQIEVAQYINSDVRGVPLAMQ 332
Query: 517 TAKPLRGISQRL 552
A+PL G QRL
Sbjct: 333 AARPLSGFVQRL 344
[133][TOP]
>UniRef100_A9RSV5 DNA-directed RNA polymerase n=1 Tax=Physcomitrella patens subsp.
patens RepID=A9RSV5_PHYPA
Length = 1397
Score = 93.6 bits (231), Expect = 9e-18
Identities = 56/149 (37%), Positives = 92/149 (61%), Gaps = 2/149 (1%)
Frame = +1
Query: 112 DAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVP 291
DA + +L+ ++RV D+L+P+R L LFE+M +D ++D+ RPE+LI+ +L VP
Sbjct: 209 DAMKCKPELKNCINRVYDNLDPMRVLQLFESMIEQDCEVLDLAE---RPEKLIVTHLIVP 265
Query: 292 PLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAA 471
P+ IRP+V + +AGS EDD+T++L I++ N +L + G A M+ E LQ + +
Sbjct: 266 PVAIRPSVEMESAAGSNEDDITVRLLGILNCNNSLRTCVEQGLAAEKTMETWELLQSQVS 325
Query: 472 RFMNSDATNLP--PLASTAKPLRGISQRL 552
+ +NS+ T +P ++ K RG QRL
Sbjct: 326 QLINSE-TPVPRSEQPTSGKQPRGFVQRL 353
[134][TOP]
>UniRef100_UPI00017927B1 PREDICTED: similar to AGAP004703-PA n=1 Tax=Acyrthosiphon pisum
RepID=UPI00017927B1
Length = 1355
Score = 93.2 bits (230), Expect = 1e-17
Identities = 57/171 (33%), Positives = 88/171 (51%), Gaps = 1/171 (0%)
Frame = +1
Query: 43 YKKPTKTELREQAKSAAMESAYGDAKRNNADLERHLSRV-GDDLNPLRTLALFEAMTAED 219
YKKP ESA D + N ++E + + ++LNP L L ++ ED
Sbjct: 186 YKKP----------GTEAESALNDVVKYNKEVESMRNYLFNENLNPQEVLRLLLSIPYED 235
Query: 220 VALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALA 399
+ L+ M P L++ + VPP CIRP+ SD +G+ EDDLT+KL+E++ +N+ +
Sbjct: 236 IILLGMNPEVSNPGWLLMTRMLVPPNCIRPSAVSDIRSGTNEDDLTLKLSEVLFINDVIV 295
Query: 400 KSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRL 552
K G LL + E+LQ+ A ++NSD + + K RG QRL
Sbjct: 296 KHKQSGAKPQLLHEDWEYLQLHCALYINSDLSGVSRTMMPKKIARGCVQRL 346
[135][TOP]
>UniRef100_Q8SRM3 DNA-directed RNA polymerase n=1 Tax=Encephalitozoon cuniculi
RepID=Q8SRM3_ENCCU
Length = 1349
Score = 90.9 bits (224), Expect = 6e-17
Identities = 51/130 (39%), Positives = 78/130 (60%)
Frame = +1
Query: 163 DDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGST 342
+++NPL L +F M +D L+ P RLI++ + VPP CIRP+V D G+
Sbjct: 232 EEINPLVALNVFNMMKEDDYELLGFLE---SPSRLIIQNVIVPPSCIRPSVSMDDE-GTN 287
Query: 343 EDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLASTA 522
EDD+T+K++EIVH N+ L + I G P L+ + + LQ++ A +NS+ LP +
Sbjct: 288 EDDITIKISEIVHTNKVLREGIEKGNPLNLINEDWDHLQLQCALLINSE---LPQIGIPG 344
Query: 523 KPLRGISQRL 552
+P+RGI QRL
Sbjct: 345 QPVRGIVQRL 354
[136][TOP]
>UniRef100_C4V991 DNA-directed RNA polymerase n=1 Tax=Nosema ceranae BRL01
RepID=C4V991_NOSCE
Length = 1335
Score = 88.6 bits (218), Expect = 3e-16
Identities = 48/129 (37%), Positives = 76/129 (58%)
Frame = +1
Query: 166 DLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTE 345
D+NP L +F + +ED + + P + I++ + VPP CIRP+V + E
Sbjct: 223 DINPQMALNIFSLIKSEDYEFLGLE---DSPVKFIIQNIIVPPACIRPSVGMAEKDSTNE 279
Query: 346 DDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLASTAK 525
DDLT+K++EI+H NE L +SI+ G ++ D E LQ++ A +NSD LP + ++
Sbjct: 280 DDLTIKISEIIHTNEVLKESIDRGNSINIINDDWESLQLQCALMVNSD---LPQINVQSQ 336
Query: 526 PLRGISQRL 552
P++GI QRL
Sbjct: 337 PIKGIVQRL 345
[137][TOP]
>UniRef100_B4IKC6 DNA-directed RNA polymerase n=1 Tax=Drosophila sechellia
RepID=B4IKC6_DROSE
Length = 1369
Score = 86.7 bits (213), Expect = 1e-15
Identities = 53/144 (36%), Positives = 78/144 (54%), Gaps = 2/144 (1%)
Frame = +1
Query: 127 NADLERHLSR--VGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLC 300
N DL L ++L PL L LFE + DVAL+ M + P+ LI+ + VPP C
Sbjct: 201 NRDLNSTLGNYSTAEELTPLMVLDLFEQIPQRDVALLGMCSHDAHPKHLIVTRVFVPPAC 260
Query: 301 IRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFM 480
IRP+V S+ AG+TEDDLTMK +EI+ +N+ + + + GG L+ + ++LQ+ A +
Sbjct: 261 IRPSVLSEVKAGTTEDDLTMKQSEILLINDVIQRHMATGGKIELIHEDWDFLQLHVALYS 320
Query: 481 NSDATNLPPLASTAKPLRGISQRL 552
+ RGI QRL
Sbjct: 321 TT--------------TRGIVQRL 330
[138][TOP]
>UniRef100_A9BK83 DNA-directed RNA polymerase n=1 Tax=Cryptophyta RepID=A9BK83_9CRYP
Length = 1323
Score = 85.9 bits (211), Expect = 2e-15
Identities = 47/111 (42%), Positives = 67/111 (60%)
Frame = +1
Query: 169 LNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTED 348
L+PL +F+ ++ ED L+D ++ P LIL YLPVPPL +RPTV + + ED
Sbjct: 200 LDPLGIFKIFQKISREDWELLDFDSIETHPTHLILYYLPVPPLGVRPTVFISETM-TNED 258
Query: 349 DLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNL 501
DLTMKLTEI +N L + G P + + D LQ+E +++NS+A NL
Sbjct: 259 DLTMKLTEIQFLNIQLKINFQTGIPFLAIKDTWSILQIECGKYLNSEAFNL 309
[139][TOP]
>UniRef100_UPI0001869927 hypothetical protein BRAFLDRAFT_246077 n=1 Tax=Branchiostoma
floridae RepID=UPI0001869927
Length = 313
Score = 85.5 bits (210), Expect = 2e-15
Identities = 42/96 (43%), Positives = 63/96 (65%)
Frame = +1
Query: 265 LILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDG 444
+IL L VPPLCIRP+V ++ AG+ EDD+TMKLTEI+ +N+ + K G A ++M+
Sbjct: 2 MILTRLLVPPLCIRPSVSTELKAGTNEDDVTMKLTEILFLNDVIQKHRATGARAQMIMED 61
Query: 445 XEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRL 552
++LQ++ A ++NS+ +P KP RG QRL
Sbjct: 62 WDFLQLQCALYINSEQGGIPLNMQPKKPTRGFCQRL 97
[140][TOP]
>UniRef100_C5YBD9 DNA-directed RNA polymerase n=1 Tax=Sorghum bicolor
RepID=C5YBD9_SORBI
Length = 1391
Score = 85.5 bits (210), Expect = 2e-15
Identities = 50/128 (39%), Positives = 74/128 (57%)
Frame = +1
Query: 169 LNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTED 348
L+P L+LF MT ED L+++ G RPE+LI+ + VPP+ IRP+V S S ED
Sbjct: 215 LDPATVLSLFRRMTDEDCELLNL---GDRPEKLIVSEIAVPPVPIRPSVVVGSSRTSNED 271
Query: 349 DLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLASTAKP 528
+T+ L IV+ N L ++++ GGP D ++LQ++ ++NSDA LP
Sbjct: 272 SITVILKSIVNTNSILKETLHTGGPFTKCFDCWQYLQLQVVEYVNSDAPCLPD-----SQ 326
Query: 529 LRGISQRL 552
RG+ QRL
Sbjct: 327 HRGLVQRL 334
[141][TOP]
>UniRef100_Q2PYS7 DNA-directed RNA polymerase (Fragment) n=1 Tax=Batrachochytrium
dendrobatidis RepID=Q2PYS7_BATDE
Length = 985
Score = 85.5 bits (210), Expect = 2e-15
Identities = 47/130 (36%), Positives = 76/130 (58%), Gaps = 1/130 (0%)
Frame = +1
Query: 166 DLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTE 345
++ P +TL L +++ +D + + A RPE +I+ LPVPP+ +RP++ D AG E
Sbjct: 115 EMTPEKTLTLLRSISDQDATDMGLSADWARPEWMIITTLPVPPMPVRPSISMD-GAGRGE 173
Query: 346 DDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLP-PLASTA 522
DDLT KL +I+ N +L + G PA ++ + LQ A +MN+D NLP + +
Sbjct: 174 DDLTHKLMDIIKANISLKRHETEGAPAHIVNEFENLLQFHVATYMNNDIANLPQAMQKSG 233
Query: 523 KPLRGISQRL 552
+PL+ I+ RL
Sbjct: 234 RPLKSIAARL 243
[142][TOP]
>UniRef100_Q8TRB7 DNA-directed RNA polymerase n=1 Tax=Methanosarcina acetivorans
RepID=Q8TRB7_METAC
Length = 880
Score = 85.5 bits (210), Expect = 2e-15
Identities = 46/132 (34%), Positives = 74/132 (56%), Gaps = 1/132 (0%)
Frame = +1
Query: 160 GDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGS 339
G+ L P FE + ED+ +I M RPE +IL LPVPP+ +RP++ + S
Sbjct: 172 GEKLTPTEIRDRFENVPDEDIRVIGMDPKNARPEWMILTVLPVPPVTVRPSITLE-SGQR 230
Query: 340 TEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLA-S 516
+EDDLT KL +I+ +N+ ++ G P +++ D E LQ F ++ + +PP
Sbjct: 231 SEDDLTHKLVDIIRINQRFQENREAGAPQLIIEDLWELLQYHVTTFFDNSVSGIPPARHR 290
Query: 517 TAKPLRGISQRL 552
+ +PL+ +SQRL
Sbjct: 291 SGRPLKTLSQRL 302
[143][TOP]
>UniRef100_Q8PUR1 DNA-directed RNA polymerase n=1 Tax=Methanosarcina mazei
RepID=Q8PUR1_METMA
Length = 880
Score = 85.1 bits (209), Expect = 3e-15
Identities = 45/132 (34%), Positives = 74/132 (56%), Gaps = 1/132 (0%)
Frame = +1
Query: 160 GDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGS 339
G+ L P FE + ED+ ++ M RPE +IL LPVPP+ +RP++ + S
Sbjct: 172 GEKLTPTEIRDRFENIPDEDIRVVGMDPKNARPEWMILTVLPVPPVTVRPSITLE-SGQR 230
Query: 340 TEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLA-S 516
+EDDLT KL +I+ +N+ ++ G P +++ D E LQ F ++ + +PP
Sbjct: 231 SEDDLTHKLVDIIRINQRFQENREAGAPQLIIEDLWELLQYHVTTFFDNSVSGIPPARHR 290
Query: 517 TAKPLRGISQRL 552
+ +PL+ +SQRL
Sbjct: 291 SGRPLKTLSQRL 302
[144][TOP]
>UniRef100_Q3IUN2 DNA-directed RNA polymerase n=1 Tax=Natronomonas pharaonis DSM 2160
RepID=Q3IUN2_NATPD
Length = 1059
Score = 84.7 bits (208), Expect = 4e-15
Identities = 51/151 (33%), Positives = 80/151 (52%), Gaps = 1/151 (0%)
Frame = +1
Query: 103 AYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYL 282
A+G N + LS GD L P FE + ED+ + + RPE +IL L
Sbjct: 307 AFGGRFENAPAPDFLLSYSGDKLMPSNVRDRFENIPDEDIETLGIDPERSRPEWMILTVL 366
Query: 283 PVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQV 462
PVPP+ RP++ D + +EDDLT KL +I+ +N+ ++ G P +++ D E LQ
Sbjct: 367 PVPPVTARPSITLD-NGQRSEDDLTHKLVDIIRINQRFMENREAGAPQLIIEDLWELLQY 425
Query: 463 EAARFMNSDATNLPPLA-STAKPLRGISQRL 552
FM+++ + PP + +PL+ +SQRL
Sbjct: 426 HVTTFMDNEISGTPPARHRSGRPLKTLSQRL 456
[145][TOP]
>UniRef100_A0B558 DNA-directed RNA polymerase n=1 Tax=Methanosaeta thermophila PT
RepID=A0B558_METTP
Length = 876
Score = 84.7 bits (208), Expect = 4e-15
Identities = 51/152 (33%), Positives = 82/152 (53%), Gaps = 3/152 (1%)
Frame = +1
Query: 106 YGDAKRNNADLERHLSRV--GDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRY 279
Y A + ER LS + G L P FE ++ ED+ ++ M RPE IL
Sbjct: 148 YCGAPQREIKFERPLSYIEDGHKLTPSDIRDRFERISDEDIMVMGMNPETARPEWTILTV 207
Query: 280 LPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQ 459
LPVPP+ +RP++ + S +EDDLT KL +I+ +N+ ++ G P +++ D E LQ
Sbjct: 208 LPVPPVTMRPSITLE-SGQRSEDDLTHKLVDIIRINQRFQENREAGAPQLIIEDLWELLQ 266
Query: 460 VEAARFMNSDATNLPPLA-STAKPLRGISQRL 552
F+++ + +PP + +PL+ +SQRL
Sbjct: 267 YHVTTFLDNTVSGVPPARHRSGRPLKTLSQRL 298
[146][TOP]
>UniRef100_Q6LXI8 DNA-directed RNA polymerase n=1 Tax=Methanococcus maripaludis
RepID=Q6LXI8_METMP
Length = 889
Score = 84.3 bits (207), Expect = 5e-15
Identities = 44/121 (36%), Positives = 75/121 (61%), Gaps = 1/121 (0%)
Frame = +1
Query: 193 LFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTE 372
+ E + AED L+ + A RPE ++L LPVPP+ +RP++ + S +EDDLT KL +
Sbjct: 186 ILEKIPAEDCKLLGINAKVARPEFMVLTVLPVPPVTVRPSITLE-SGERSEDDLTHKLVD 244
Query: 373 IVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLA-STAKPLRGISQR 549
I+ +N+ L ++IN G P +++ D + LQ + +++A +PP + +PLR ++QR
Sbjct: 245 IIRINQRLEENINGGAPNLIIEDLWDLLQYHINTYFDNEAPGIPPARHRSGRPLRTLAQR 304
Query: 550 L 552
L
Sbjct: 305 L 305
[147][TOP]
>UniRef100_Q464Y7 DNA-directed RNA polymerase n=1 Tax=Methanosarcina barkeri str.
Fusaro RepID=Q464Y7_METBF
Length = 880
Score = 84.3 bits (207), Expect = 5e-15
Identities = 45/132 (34%), Positives = 74/132 (56%), Gaps = 1/132 (0%)
Frame = +1
Query: 160 GDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGS 339
G+ L P FE + +D+ +I M RPE +IL LPVPP+ +RP++ + S
Sbjct: 172 GEKLTPTEIRDRFENIPDDDIRVIGMDPKNARPEWMILTVLPVPPVTVRPSITLE-SGQR 230
Query: 340 TEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLA-S 516
+EDDLT KL +I+ +N+ ++ G P +++ D E LQ F ++ + +PP
Sbjct: 231 SEDDLTHKLVDIIRINQRFQENREAGAPQLIIEDLWELLQYHVTTFFDNSVSGIPPARHR 290
Query: 517 TAKPLRGISQRL 552
+ +PL+ +SQRL
Sbjct: 291 SGRPLKTLSQRL 302
[148][TOP]
>UniRef100_A4FWF6 DNA-directed RNA polymerase n=1 Tax=Methanococcus maripaludis C5
RepID=A4FWF6_METM5
Length = 889
Score = 84.3 bits (207), Expect = 5e-15
Identities = 44/121 (36%), Positives = 75/121 (61%), Gaps = 1/121 (0%)
Frame = +1
Query: 193 LFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTE 372
+ E + AED L+ + A RPE ++L LPVPP+ +RP++ + S +EDDLT KL +
Sbjct: 186 ILEKIPAEDCRLLGINAKVARPEFMVLTVLPVPPVTVRPSITLE-SGERSEDDLTHKLVD 244
Query: 373 IVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLA-STAKPLRGISQR 549
I+ +N+ L ++IN G P +++ D + LQ + +++A +PP + +PLR ++QR
Sbjct: 245 IIRINQRLEENINGGAPNLIIEDLWDLLQYHINTYFDNEAPGIPPARHRSGRPLRTLAQR 304
Query: 550 L 552
L
Sbjct: 305 L 305
[149][TOP]
>UniRef100_P11512 DNA-directed RNA polymerase subunit A' n=1 Tax=Sulfolobus
acidocaldarius RepID=RPOA1_SULAC
Length = 880
Score = 84.0 bits (206), Expect = 7e-15
Identities = 54/146 (36%), Positives = 80/146 (54%), Gaps = 1/146 (0%)
Frame = +1
Query: 118 KRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPL 297
K N + ER+ S V L+P E + DV L+ RPE +IL LPVPP+
Sbjct: 160 KPYNFNEERNGSIV--KLSPSEIRDRLERIPDSDVELLGYDPKSSRPEWMILTVLPVPPI 217
Query: 298 CIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARF 477
IRP++ + S EDDLT KL +I+ +NE L +SI G P +++ D + LQ A +
Sbjct: 218 TIRPSITIE-SGIRAEDDLTHKLVDIIRLNERLKESIEAGAPQLIIEDLWDLLQYHVATY 276
Query: 478 MNSDATNLPPLA-STAKPLRGISQRL 552
+++ LPP + +PLR ++QRL
Sbjct: 277 FDNEIPGLPPAKHRSGRPLRTLAQRL 302
[150][TOP]
>UniRef100_Q980R2 DNA-directed RNA polymerase subunit A' n=2 Tax=Sulfolobus
solfataricus RepID=RPOA1_SULSO
Length = 880
Score = 83.6 bits (205), Expect = 9e-15
Identities = 58/178 (32%), Positives = 86/178 (48%), Gaps = 1/178 (0%)
Frame = +1
Query: 22 AARSINLYKKPTKTELREQAKSAAMESAYGDAKRNNADLERHLSRVGDDLNPLRTLALFE 201
AAR + Y K KT ++ Q E Y + L P E
Sbjct: 128 AARRLTEYVK--KTAMKAQVCPHCNEKQYKIKLEKPYNFYEERKEGVAKLTPSDIRERLE 185
Query: 202 AMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVH 381
+ DV ++ RPE +IL LPVPP+ IRP++ + S EDDLT KL +IV
Sbjct: 186 KIPDSDVEILGYDPTTSRPEWMILTVLPVPPITIRPSIMIE-SGIRAEDDLTHKLVDIVR 244
Query: 382 MNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLA-STAKPLRGISQRL 552
+NE L +SI+ G P +++ D + LQ A + +++ LPP + +PLR ++QRL
Sbjct: 245 INERLKESIDAGAPQLIIEDLWDLLQYHVATYFDNEIPGLPPSKHRSGRPLRTLAQRL 302
[151][TOP]
>UniRef100_C0SHD3 DNA-directed RNA polymerase n=1 Tax=Paracoccidioides brasiliensis
Pb03 RepID=C0SHD3_PARBP
Length = 1449
Score = 83.2 bits (204), Expect = 1e-14
Identities = 52/154 (33%), Positives = 82/154 (53%), Gaps = 2/154 (1%)
Frame = +1
Query: 97 ESAYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILR 276
+ ++ +AK++N ++E+H + DDL+PLR L LF ++ ED L+ + LR
Sbjct: 211 DRSFEEAKKSNPEIEKHFKKAHDDLHPLRVLKLFRRISNEDCELLGLN----------LR 260
Query: 277 YLP--VPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXE 450
L V + C A STEDDLT KL +I+ N L ++N G P +++ +
Sbjct: 261 KLDRGVSVAVYSRSACE---AASTEDDLTAKLGDIIQSNMNLKNALNKGAPVQTIIECWD 317
Query: 451 WLQVEAARFMNSDATNLPPLASTAKPLRGISQRL 552
+Q++ A ++NSD L A KP+RG QRL
Sbjct: 318 HMQLQLAVYINSDVPGLQK-ADFGKPIRGFCQRL 350
[152][TOP]
>UniRef100_Q5UZR4 DNA-directed RNA polymerase n=1 Tax=Haloarcula marismortui
RepID=Q5UZR4_HALMA
Length = 969
Score = 83.2 bits (204), Expect = 1e-14
Identities = 58/175 (33%), Positives = 91/175 (52%), Gaps = 12/175 (6%)
Frame = +1
Query: 64 ELREQA---KSAAMESAYGDAKRNNAD---LERHLS--RVGDDLNPLRTLAL---FEAMT 210
EL E+ S E G+ + D LE+ LS +D+N L + FE +
Sbjct: 197 ELSEETGIDSSRVQEILSGEFRPRQEDRKALEKALSVDLTEEDMNKLMPSDIRDWFEDIP 256
Query: 211 AEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNE 390
ED+ ++ M+ RPE +IL LPVPP+ RP++ D S EDDLT KL +I+ +N+
Sbjct: 257 DEDIEVLGMKPARSRPEWMILTVLPVPPVTARPSITLDNGQRS-EDDLTHKLVDIIRINQ 315
Query: 391 ALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLA-STAKPLRGISQRL 552
++ G P +++ D E LQ FM+++ + PP + +PL+ +SQRL
Sbjct: 316 RFMENREAGAPQLIIEDLWELLQYHVTTFMDNEISGTPPARHRSGRPLKTLSQRL 370
[153][TOP]
>UniRef100_A6VGU9 DNA-directed RNA polymerase n=1 Tax=Methanococcus maripaludis C7
RepID=A6VGU9_METM7
Length = 889
Score = 83.2 bits (204), Expect = 1e-14
Identities = 43/121 (35%), Positives = 74/121 (61%), Gaps = 1/121 (0%)
Frame = +1
Query: 193 LFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTE 372
+ E + ED L+ + A RPE ++L LPVPP+ +RP++ + S +EDDLT KL +
Sbjct: 186 ILEKIPGEDCKLLGINAKVARPEYMVLTVLPVPPVTVRPSITLE-SGERSEDDLTHKLVD 244
Query: 373 IVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLA-STAKPLRGISQR 549
I+ +N+ L ++IN G P +++ D + LQ + +++A +PP + +PLR ++QR
Sbjct: 245 IIRINQRLEENINGGAPNLIIEDLWDLLQYHINTYFDNEAPGIPPARHRSGRPLRTLAQR 304
Query: 550 L 552
L
Sbjct: 305 L 305
[154][TOP]
>UniRef100_P09846 DNA-directed RNA polymerase subunit A' n=1 Tax=Methanothermobacter
thermautotrophicus str. Winter RepID=RPOA1_METTW
Length = 865
Score = 83.2 bits (204), Expect = 1e-14
Identities = 51/174 (29%), Positives = 93/174 (53%), Gaps = 13/174 (7%)
Frame = +1
Query: 70 REQAKSAAMESAYGDAKRNNAD----------LERHLSRVGDD--LNPLRTLALFEAMTA 213
RE++ + ++ Y +A+R+ L++ +S V D L P E +T
Sbjct: 126 REESLTPIIKEIYAEARRDRCPHCEEEQEEIKLDKPVSIVEGDYKLTPSEVRERLERITD 185
Query: 214 EDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEA 393
D L+ + RPE ++L LPVPP+ +RP++ + S EDDLT KL +I+ +N+
Sbjct: 186 NDSLLLGVNPEVARPEWMVLTVLPVPPVTVRPSITLETGERS-EDDLTHKLVDILRINQR 244
Query: 394 LAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLA-STAKPLRGISQRL 552
L +++ G P +++ D E LQ + +++A+ +PP + +PL+ ++QRL
Sbjct: 245 LKENMEAGAPQLIVEDLWELLQYHVTTYFDNEASGVPPARHRSGRPLKTLAQRL 298
[155][TOP]
>UniRef100_B6AIF4 DNA-directed RNA polymerase n=1 Tax=Cryptosporidium muris RN66
RepID=B6AIF4_9CRYT
Length = 1803
Score = 82.8 bits (203), Expect = 2e-14
Identities = 50/133 (37%), Positives = 77/133 (57%), Gaps = 3/133 (2%)
Frame = +1
Query: 163 DDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGST 342
+DL PL L + + ED+ +++M +P+RL+L LPVPP CIRP+V AGS
Sbjct: 215 EDLTPLFVQTLLQKVPYEDLDILEMF----KPDRLLLSRLPVPPNCIRPSVTMG-EAGSN 269
Query: 343 EDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLAST- 519
EDDLT+ L+EI +N + + G + L+ E+LQ++ R +N++A + L ++
Sbjct: 270 EDDLTVILSEITDLNNMIKSQMKSGFQTLQLLGNWEFLQLQCTRLINAEAPGVNQLLASK 329
Query: 520 --AKPLRGISQRL 552
K RGI QRL
Sbjct: 330 NIPKAGRGICQRL 342
[156][TOP]
>UniRef100_A3DMP4 DNA-directed RNA polymerase n=1 Tax=Staphylothermus marinus F1
RepID=A3DMP4_STAMF
Length = 886
Score = 82.8 bits (203), Expect = 2e-14
Identities = 46/129 (35%), Positives = 71/129 (55%), Gaps = 1/129 (0%)
Frame = +1
Query: 169 LNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTED 348
LNP+ A E + EDV L+ + RPE ++L LPVPP +RP++ + S ED
Sbjct: 180 LNPIEVRARLEKILDEDVRLLGGDPIDARPEWMVLTVLPVPPRSVRPSILLETGIRS-ED 238
Query: 349 DLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLA-STAK 525
DLT KL +I+ +N L + I G P ++ D E LQ + +++A +P + K
Sbjct: 239 DLTHKLVDIIRINNRLREHIESGAPNAIIEDEWELLQYHVTTYFDNEAPGIPVARHRSGK 298
Query: 526 PLRGISQRL 552
L+G++QRL
Sbjct: 299 VLKGLAQRL 307
[157][TOP]
>UniRef100_C7NYI6 DNA-directed RNA polymerase subunit A' n=1 Tax=Halomicrobium
mukohataei DSM 12286 RepID=C7NYI6_HALMD
Length = 972
Score = 82.8 bits (203), Expect = 2e-14
Identities = 44/120 (36%), Positives = 71/120 (59%), Gaps = 1/120 (0%)
Frame = +1
Query: 196 FEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEI 375
FE + EDV ++ M+ RPE +IL LPVPP+ RP++ D + +EDDLT KL +I
Sbjct: 256 FEDIPDEDVEVLGMKPARSRPEWMILTVLPVPPVTARPSITLD-NGQRSEDDLTHKLVDI 314
Query: 376 VHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLA-STAKPLRGISQRL 552
+ +N+ ++ G P +++ D E LQ FM+++ + PP + +PL+ +SQRL
Sbjct: 315 IRINQRFMENREAGAPQLIIEDLWELLQYHVTTFMDNEISGTPPARHRSGRPLKTLSQRL 374
[158][TOP]
>UniRef100_A8TEB8 DNA-directed RNA polymerase n=1 Tax=Methanococcus voltae A3
RepID=A8TEB8_METVO
Length = 888
Score = 82.8 bits (203), Expect = 2e-14
Identities = 43/121 (35%), Positives = 74/121 (61%), Gaps = 1/121 (0%)
Frame = +1
Query: 193 LFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTE 372
+ E + A D L+ + + RPE +IL LPVPP+ +RP++ + S +EDDLT KL +
Sbjct: 186 ILEKIPANDCKLLGINHIVARPEYMILTVLPVPPVTVRPSITLE-SGERSEDDLTHKLVD 244
Query: 373 IVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLA-STAKPLRGISQR 549
I+ +N+ L ++IN G P +++ D + LQ + +++A +PP + +PLR ++QR
Sbjct: 245 IIRINQRLEENINGGAPNLIIEDLWDLLQYHINTYFDNEAPGIPPARHRSGRPLRTLAQR 304
Query: 550 L 552
L
Sbjct: 305 L 305
[159][TOP]
>UniRef100_C4KIV8 DNA-directed RNA polymerase n=1 Tax=Sulfolobus islandicus M.16.4
RepID=C4KIV8_SULIK
Length = 880
Score = 82.4 bits (202), Expect = 2e-14
Identities = 48/129 (37%), Positives = 72/129 (55%), Gaps = 1/129 (0%)
Frame = +1
Query: 169 LNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTED 348
L P E + DV ++ RPE +IL LPVPP+ IRP++ + S ED
Sbjct: 175 LTPSDIRERLEKVPESDVEILGYDPTTSRPEWMILTVLPVPPITIRPSIMIE-SGIRAED 233
Query: 349 DLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLA-STAK 525
DLT KL +IV +NE L +SI+ G P +++ D + LQ A + +++ LPP + +
Sbjct: 234 DLTHKLVDIVRINERLKESIDAGAPQLIIEDLWDLLQYHVATYFDNEIPGLPPSKHRSGR 293
Query: 526 PLRGISQRL 552
PLR ++QRL
Sbjct: 294 PLRTLAQRL 302
[160][TOP]
>UniRef100_C3MY99 DNA-directed RNA polymerase n=2 Tax=Sulfolobus islandicus
RepID=C3MY99_SULIM
Length = 880
Score = 82.4 bits (202), Expect = 2e-14
Identities = 48/129 (37%), Positives = 72/129 (55%), Gaps = 1/129 (0%)
Frame = +1
Query: 169 LNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTED 348
L P E + DV ++ RPE +IL LPVPP+ IRP++ + S ED
Sbjct: 175 LTPSDIRERLEKVPESDVEILGYDPTTSRPEWMILTVLPVPPITIRPSIMIE-SGIRAED 233
Query: 349 DLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLA-STAK 525
DLT KL +IV +NE L +SI+ G P +++ D + LQ A + +++ LPP + +
Sbjct: 234 DLTHKLVDIVRINERLKESIDAGAPQLIIEDLWDLLQYHVATYFDNEIPGLPPSKHRSGR 293
Query: 526 PLRGISQRL 552
PLR ++QRL
Sbjct: 294 PLRTLAQRL 302
[161][TOP]
>UniRef100_C3MRK3 DNA-directed RNA polymerase n=3 Tax=Sulfolobus islandicus
RepID=C3MRK3_SULIL
Length = 880
Score = 82.4 bits (202), Expect = 2e-14
Identities = 48/129 (37%), Positives = 72/129 (55%), Gaps = 1/129 (0%)
Frame = +1
Query: 169 LNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTED 348
L P E + DV ++ RPE +IL LPVPP+ IRP++ + S ED
Sbjct: 175 LTPSDIRERLEKVPESDVEILGYDPTTSRPEWMILTVLPVPPITIRPSIMIE-SGIRAED 233
Query: 349 DLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLA-STAK 525
DLT KL +IV +NE L +SI+ G P +++ D + LQ A + +++ LPP + +
Sbjct: 234 DLTHKLVDIVRINERLKESIDAGAPQLIIEDLWDLLQYHVATYFDNEIPGLPPSKHRSGR 293
Query: 526 PLRGISQRL 552
PLR ++QRL
Sbjct: 294 PLRTLAQRL 302
[162][TOP]
>UniRef100_B8YB53 DNA-directed RNA polymerase n=1 Tax=Sulfolobus shibatae B12
RepID=B8YB53_SULSH
Length = 880
Score = 82.4 bits (202), Expect = 2e-14
Identities = 48/129 (37%), Positives = 72/129 (55%), Gaps = 1/129 (0%)
Frame = +1
Query: 169 LNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTED 348
L P E + DV ++ RPE +IL LPVPP+ IRP++ + S ED
Sbjct: 175 LTPSDIRERLEKVPESDVEILGYDPTTSRPEWMILTVLPVPPITIRPSIMIE-SGIRAED 233
Query: 349 DLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLA-STAK 525
DLT KL +IV +NE L +SI+ G P +++ D + LQ A + +++ LPP + +
Sbjct: 234 DLTHKLVDIVRINERLKESIDAGAPQLIIEDLWDLLQYHVATYFDNEIPGLPPSKHRSGR 293
Query: 526 PLRGISQRL 552
PLR ++QRL
Sbjct: 294 PLRTLAQRL 302
[163][TOP]
>UniRef100_A9A9V0 DNA-directed RNA polymerase n=1 Tax=Methanococcus maripaludis C6
RepID=A9A9V0_METM6
Length = 889
Score = 82.0 bits (201), Expect = 3e-14
Identities = 42/121 (34%), Positives = 74/121 (61%), Gaps = 1/121 (0%)
Frame = +1
Query: 193 LFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTE 372
+ E + ED L+ + + RPE ++L LPVPP+ +RP++ + S +EDDLT KL +
Sbjct: 186 ILEKIPGEDCKLLGINSKVARPEYMVLTVLPVPPVTVRPSITLE-SGERSEDDLTHKLVD 244
Query: 373 IVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLA-STAKPLRGISQR 549
I+ +N+ L ++IN G P +++ D + LQ + +++A +PP + +PLR ++QR
Sbjct: 245 IIRINQRLEENINGGAPNLIIEDLWDLLQYHINTYFDNEAPGIPPARHRSGRPLRTLAQR 304
Query: 550 L 552
L
Sbjct: 305 L 305
[164][TOP]
>UniRef100_B3A009 DNA-directed RNA polymerase n=1 Tax=Haloarcula japonica
RepID=B3A009_HALJP
Length = 969
Score = 81.6 bits (200), Expect = 3e-14
Identities = 46/134 (34%), Positives = 76/134 (56%), Gaps = 4/134 (2%)
Frame = +1
Query: 163 DDLNPLRTLAL---FEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSA 333
+D+N L + FE + +D+ ++ M+ RPE +IL LPVPP+ RP++ D
Sbjct: 238 EDMNKLMPSDIRDWFEDIPDQDIEVLGMKPARSRPEWMILTVLPVPPVTARPSITLDNGQ 297
Query: 334 GSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLA 513
S EDDLT KL +I+ +N+ ++ G P +++ D E LQ FM+++ + PP
Sbjct: 298 RS-EDDLTHKLVDIIRINQRFMENREAGAPQLIIEDLWELLQYHVTTFMDNEISGTPPAR 356
Query: 514 -STAKPLRGISQRL 552
+ +PL+ +SQRL
Sbjct: 357 HRSGRPLKTLSQRL 370
[165][TOP]
>UniRef100_O27125 DNA-directed RNA polymerase subunit A' n=1 Tax=Methanothermobacter
thermautotrophicus str. Delta H RepID=RPOA1_METTH
Length = 870
Score = 81.3 bits (199), Expect = 5e-14
Identities = 48/174 (27%), Positives = 94/174 (54%), Gaps = 13/174 (7%)
Frame = +1
Query: 70 REQAKSAAMESAYGDAKRNNAD----------LERHLSRVGDD--LNPLRTLALFEAMTA 213
+E++ + ++ Y +A+R+ L++ +S V D L P E ++
Sbjct: 126 KEESLTPIIKEIYAEARRDKCPHCEEEQEEIKLDKPVSIVEGDYKLTPSEVRERLERISD 185
Query: 214 EDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEA 393
+D ++ + RPE ++L LPVPP+ +RP++ + S EDDLT KL +I+ +N+
Sbjct: 186 DDALILGVNPEVARPEWMVLTVLPVPPVTVRPSITLETGERS-EDDLTHKLVDILRINQR 244
Query: 394 LAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLA-STAKPLRGISQRL 552
L +++ G P +++ D E LQ + +++A+ +PP + +PL+ ++QRL
Sbjct: 245 LKENMEAGAPQLIVEDLWELLQYHVTTYFDNEASGVPPARHRSGRPLKTLAQRL 298
[166][TOP]
>UniRef100_Q27900 DNA-directed RNA polymerase (Fragment) n=1 Tax=Euplotes
octocarinatus RepID=Q27900_EUPOC
Length = 511
Score = 80.9 bits (198), Expect = 6e-14
Identities = 51/143 (35%), Positives = 78/143 (54%), Gaps = 1/143 (0%)
Frame = +1
Query: 127 NADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIR 306
N D+E L+++ D+NPL L + + +D+ L DM P +I+ Y+ VPP+C+R
Sbjct: 214 NKDVEWGLNKMQQDINPLIAYNLLKNIRKDDIPLFDMNGKNINPCDMIVYYIIVPPVCLR 273
Query: 307 PTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAV-LLMDGXEWLQVEAARFMN 483
P+V + EDDLT+KL+EI+ +N + KS +GGP L LQ A+++N
Sbjct: 274 PSVAVTETK-RNEDDLTVKLSEILQLN-MIIKSFIVGGPNYSKLATTWNQLQYTLAQYIN 331
Query: 484 SDATNLPPLASTAKPLRGISQRL 552
+D LP K +R QRL
Sbjct: 332 ADTPGLPLNMVGNKAIRAFCQRL 354
[167][TOP]
>UniRef100_P41556 DNA-directed RNA polymerase subunit A' n=1 Tax=Methanococcus
vannielii SB RepID=RPOA1_METVS
Length = 889
Score = 80.9 bits (198), Expect = 6e-14
Identities = 42/121 (34%), Positives = 74/121 (61%), Gaps = 1/121 (0%)
Frame = +1
Query: 193 LFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTE 372
+ E + ED L+ + + RPE ++L LPVPP+ +RP++ + S +EDDLT KL +
Sbjct: 186 ILEKIPNEDCKLLGINSRVARPEYMVLTVLPVPPVTVRPSITLE-SGERSEDDLTHKLVD 244
Query: 373 IVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLA-STAKPLRGISQR 549
I+ +N+ L ++IN G P +++ D + LQ + +++A +PP + +PLR ++QR
Sbjct: 245 IIRINQRLEENINGGAPNLIIEDLWDLLQYHINTYFDNEAPGIPPARHRSGRPLRTLAQR 304
Query: 550 L 552
L
Sbjct: 305 L 305
[168][TOP]
>UniRef100_A2DEX5 DNA-directed RNA polymerase n=1 Tax=Trichomonas vaginalis G3
RepID=A2DEX5_TRIVA
Length = 1657
Score = 80.5 bits (197), Expect = 8e-14
Identities = 47/141 (33%), Positives = 75/141 (53%), Gaps = 1/141 (0%)
Frame = +1
Query: 133 DLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPT 312
D +++L + DD+ PLR L LF+A+ + L+ P +I+ + +PP CIRP
Sbjct: 181 DYKKYLDNICDDITPLRALQLFKAIPTRQIPLLLSGFSVSSPADMIITSIVIPPNCIRPA 240
Query: 313 VCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDA 492
V + G+ +DDLT++L + VH N+ + KSI +G A M+ LQ +NS+A
Sbjct: 241 VIA-AGEGTNQDDLTVRLVDSVHFNDEIRKSIEVGRQASSTMELWSSLQQNVNSSINSEA 299
Query: 493 TNLPPLASTA-KPLRGISQRL 552
+ KP+ G+ QRL
Sbjct: 300 ADTAAKTKKKNKPVIGVIQRL 320
[169][TOP]
>UniRef100_Q12WS6 DNA-directed RNA polymerase n=1 Tax=Methanococcoides burtonii DSM
6242 RepID=Q12WS6_METBU
Length = 883
Score = 80.5 bits (197), Expect = 8e-14
Identities = 42/132 (31%), Positives = 76/132 (57%), Gaps = 1/132 (0%)
Frame = +1
Query: 160 GDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGS 339
G L P FE ++ +D+ ++ M RPE +IL LPVPP+ +RP++ + S
Sbjct: 175 GHKLTPTEIRDRFENISDDDIRVMGMNPDTARPEWMILTVLPVPPVTVRPSITLE-SGQR 233
Query: 340 TEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLA-S 516
+EDDLT KL +I+ +N+ ++ + G P +++ D E LQ + +++ + +PP
Sbjct: 234 SEDDLTHKLVDIIRINQRFQENRDAGAPQLIIEDLWELLQYHLTTYFDNEVSGVPPARHR 293
Query: 517 TAKPLRGISQRL 552
+ +PL+ ++QRL
Sbjct: 294 SGRPLKTLTQRL 305
[170][TOP]
>UniRef100_Q9HM79 DNA-directed RNA polymerase subunit A' n=2 Tax=Halobacterium
salinarum RepID=RPOA1_HALSA
Length = 971
Score = 80.5 bits (197), Expect = 8e-14
Identities = 56/175 (32%), Positives = 86/175 (49%), Gaps = 12/175 (6%)
Frame = +1
Query: 64 ELREQAK---SAAMESAYGDAKRNNADLERHLSRVGDDLN--------PLRTLALFEAMT 210
EL EQ S E G+ + D E + +G DL P FE +
Sbjct: 201 ELAEQTDIDISRINEILSGEFRPRREDREAIETAIGADLTTEDMNKLMPSDIRDWFEDIP 260
Query: 211 AEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNE 390
ED+ + + + RPE +IL LPVPP+ RP++ D S EDDLT KL +I+ +N+
Sbjct: 261 GEDLEALGVNSDRSRPEWMILTVLPVPPVTARPSITLDNGQRS-EDDLTHKLVDIIRINQ 319
Query: 391 ALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLA-STAKPLRGISQRL 552
++ G P +++ D E LQ FM+++ + PP + +PL+ +SQRL
Sbjct: 320 RFMENREAGAPQLIIEDLWELLQYHVTTFMDNEISGTPPARHRSGRPLKTLSQRL 374
[171][TOP]
>UniRef100_B9Z9B0 DNA-directed RNA polymerase n=1 Tax=Natrialba magadii ATCC 43099
RepID=B9Z9B0_NATMA
Length = 976
Score = 80.1 bits (196), Expect = 1e-13
Identities = 44/120 (36%), Positives = 70/120 (58%), Gaps = 1/120 (0%)
Frame = +1
Query: 196 FEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEI 375
FE + ED+ ++ + A RPE +IL LPVPP+ RP++ D S EDDLT KL +I
Sbjct: 255 FENIPDEDIEVLGIDADRSRPEWMILTVLPVPPVTARPSITLDNGQRS-EDDLTHKLVDI 313
Query: 376 VHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLA-STAKPLRGISQRL 552
+ +N+ ++ G P +++ D E LQ FM+++ + PP + +PL+ +SQRL
Sbjct: 314 IRINQRFMENREAGAPQLIIEDLWELLQYHVTTFMDNEISGTPPARHRSGRPLKTLSQRL 373
[172][TOP]
>UniRef100_P31813 DNA-directed RNA polymerase subunit A' n=1 Tax=Thermococcus celer
RepID=RPOA1_THECE
Length = 905
Score = 80.1 bits (196), Expect = 1e-13
Identities = 42/119 (35%), Positives = 70/119 (58%), Gaps = 1/119 (0%)
Frame = +1
Query: 199 EAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIV 378
E + D+ LI + A RPE ++L LPVPP+ +RP++ + S EDDLT KL +I+
Sbjct: 191 EKIPDRDLPLIGLDAEKARPEWMVLTVLPVPPVTMRPSITLE-SGIRAEDDLTHKLVDII 249
Query: 379 HMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLA-STAKPLRGISQRL 552
+N L +I G P +++ D + LQ ++N++ + +PP + +PL+ +SQRL
Sbjct: 250 RINNRLKSNIEAGAPQLIIEDLWDLLQYHVTTYINNETSGIPPAKHKSGRPLKTLSQRL 308
[173][TOP]
>UniRef100_A5K7T9 DNA-directed RNA polymerase n=1 Tax=Plasmodium vivax
RepID=A5K7T9_PLAVI
Length = 1946
Score = 79.7 bits (195), Expect = 1e-13
Identities = 52/133 (39%), Positives = 75/133 (56%), Gaps = 3/133 (2%)
Frame = +1
Query: 163 DDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGST 342
DDLN L L LF+ M V L+++ + PE+L++ L VPP IRP+V D G+
Sbjct: 238 DDLNSLYVLNLFKNMNPYHVKLLNVES----PEKLLITALLVPPNTIRPSVVIDEH-GTA 292
Query: 343 EDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLAST- 519
EDDLT L+EI +N + + G + E+LQ++ RF+NSD+ + L +T
Sbjct: 293 EDDLTCILSEITQLNNTINNQCSNGYQTNQFLGNVEFLQLQITRFINSDSPAVSQLLATQ 352
Query: 520 --AKPLRGISQRL 552
+KP RGI QRL
Sbjct: 353 NISKPGRGICQRL 365
[174][TOP]
>UniRef100_Q2PYS6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Polychytrium
aggregatum RepID=Q2PYS6_9FUNG
Length = 1016
Score = 79.7 bits (195), Expect = 1e-13
Identities = 46/158 (29%), Positives = 85/158 (53%), Gaps = 1/158 (0%)
Frame = +1
Query: 82 KSAAMESAYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPE 261
+ A++ +Y R++ D + +V DL + +++F++++ ED+ + + RPE
Sbjct: 111 RKLALDLSYTVVLRDDNDQTKETKKV--DLTAEKVVSIFKSISEEDINNMGLSQDWARPE 168
Query: 262 RLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMD 441
+ + L VPP+ +RP V + G ++DDLT K+ +IV N L K G PA ++ +
Sbjct: 169 WMCITVLAVPPMPVRPAVNMNNGGGVSQDDLTYKIADIVKTNNLLRKHEAEGSPAHVINE 228
Query: 442 GXEWLQVEAARFMNSDATNLPPL-ASTAKPLRGISQRL 552
+ LQ A +MN+D + +P + +PL+ I RL
Sbjct: 229 FEKLLQYHVATYMNNDISGIPKAQQKSGRPLKSIRARL 266
[175][TOP]
>UniRef100_B5IH61 DNA-directed RNA polymerase (Fragment) n=1 Tax=Aciduliprofundum
boonei T469 RepID=B5IH61_9EURY
Length = 661
Score = 79.7 bits (195), Expect = 1e-13
Identities = 46/148 (31%), Positives = 76/148 (51%), Gaps = 1/148 (0%)
Frame = +1
Query: 112 DAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVP 291
+ K+ D G L P E + ED+ L+ M RPE ++L LPVP
Sbjct: 103 EQKKITLDKPTTFREEGRKLTPKEIRERLERIPDEDLPLLGMNPETARPEWMVLTVLPVP 162
Query: 292 PLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAA 471
P+ +RPT+ + S EDDLT KL +I+ +N+ L ++ + G P +++ D E LQ
Sbjct: 163 PVNVRPTITLETGERS-EDDLTHKLVDIIRINQRLRENRDSGAPQLIIEDLWELLQYHVT 221
Query: 472 RFMNSDATNLPPLA-STAKPLRGISQRL 552
+ ++ + +PP + +PL+ + QRL
Sbjct: 222 TYFDNQTSGIPPARHRSGRPLKTLVQRL 249
[176][TOP]
>UniRef100_B5IGJ6 DNA-directed RNA polymerase n=1 Tax=Aciduliprofundum boonei T469
RepID=B5IGJ6_9EURY
Length = 895
Score = 79.7 bits (195), Expect = 1e-13
Identities = 46/148 (31%), Positives = 76/148 (51%), Gaps = 1/148 (0%)
Frame = +1
Query: 112 DAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVP 291
+ K+ D G L P E + ED+ L+ M RPE ++L LPVP
Sbjct: 160 EQKKITLDKPTTFREEGRKLTPKEIRERLERIPDEDLPLLGMNPETARPEWMVLTVLPVP 219
Query: 292 PLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAA 471
P+ +RPT+ + S EDDLT KL +I+ +N+ L ++ + G P +++ D E LQ
Sbjct: 220 PVNVRPTITLETGERS-EDDLTHKLVDIIRINQRLRENRDSGAPQLIIEDLWELLQYHVT 278
Query: 472 RFMNSDATNLPPLA-STAKPLRGISQRL 552
+ ++ + +PP + +PL+ + QRL
Sbjct: 279 TYFDNQTSGIPPARHRSGRPLKTLVQRL 306
[177][TOP]
>UniRef100_B3L8U1 DNA-directed RNA polymerase n=1 Tax=Plasmodium knowlesi strain H
RepID=B3L8U1_PLAKH
Length = 1970
Score = 79.3 bits (194), Expect = 2e-13
Identities = 52/133 (39%), Positives = 74/133 (55%), Gaps = 3/133 (2%)
Frame = +1
Query: 163 DDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGST 342
DDLN L L LF+ M V L+++ PE+L++ L VPP IRP+V D G+
Sbjct: 218 DDLNSLYVLNLFKNMNPYHVKLLNVE----NPEKLLITALLVPPNTIRPSVIIDEH-GTA 272
Query: 343 EDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLAST- 519
EDDLT L+EI +N + + G + E+LQ++ RF+NSD+ + L +T
Sbjct: 273 EDDLTCILSEITQLNNTINNQCSNGYQTNQFLGNVEFLQLQITRFINSDSPAVSQLLATQ 332
Query: 520 --AKPLRGISQRL 552
+KP RGI QRL
Sbjct: 333 NISKPGRGICQRL 345
[178][TOP]
>UniRef100_Q2PYR6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Coemansia reversa
RepID=Q2PYR6_9FUNG
Length = 1013
Score = 79.3 bits (194), Expect = 2e-13
Identities = 45/131 (34%), Positives = 73/131 (55%), Gaps = 1/131 (0%)
Frame = +1
Query: 163 DDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGST 342
D+++ R L +T D + + RPE ++L +PVPP+ +RP++ D S
Sbjct: 132 DEVSVERVLQTLRKITDRDAETLGIDPYFARPEWMVLHVMPVPPMTVRPSIQMDAMRPS- 190
Query: 343 EDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLP-PLAST 519
EDDLT KL++I+ NE L + I G PA ++ + LQ A FMN++A+ +P L +
Sbjct: 191 EDDLTYKLSDILKANERLQRCIVEGAPAHVINEFVTLLQFHTAAFMNNEASGMPQALQKS 250
Query: 520 AKPLRGISQRL 552
+P++ I RL
Sbjct: 251 GRPIKSIRARL 261
[179][TOP]
>UniRef100_B9LQV9 DNA-directed RNA polymerase n=1 Tax=Halorubrum lacusprofundi ATCC
49239 RepID=B9LQV9_HALLT
Length = 975
Score = 79.3 bits (194), Expect = 2e-13
Identities = 51/171 (29%), Positives = 90/171 (52%), Gaps = 6/171 (3%)
Frame = +1
Query: 58 KTELREQAKSAAMESAYGDAKRNNADLERHLS--RVGDDLNPLRTLAL---FEAMTAEDV 222
KT++ + + M + K + +E+ L +D+N L + FE + ED+
Sbjct: 204 KTDIDLERINEIMAGEFRPRKEDRRAIEKALDIDLTEEDMNKLMPSDIRDWFEDIPDEDL 263
Query: 223 ALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAK 402
++ + + RPE +IL LPVPP+ RP++ D S EDDLT KL +I+ +N+ +
Sbjct: 264 EVLGIDSEHSRPEWMILTVLPVPPVTTRPSITLDNGQRS-EDDLTHKLVDIIRINQRFME 322
Query: 403 SINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLA-STAKPLRGISQRL 552
+ G P +++ D E LQ F++++ + PP + +PL+ +SQRL
Sbjct: 323 NREAGAPQLIIEDLWELLQYHVTTFVDNEISGTPPARHRSGRPLKTLSQRL 373
[180][TOP]
>UniRef100_A4YCQ9 DNA-directed RNA polymerase n=1 Tax=Metallosphaera sedula DSM 5348
RepID=A4YCQ9_METS5
Length = 886
Score = 79.3 bits (194), Expect = 2e-13
Identities = 48/129 (37%), Positives = 71/129 (55%), Gaps = 1/129 (0%)
Frame = +1
Query: 169 LNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTED 348
L P E + DV L+ RPE +IL LPVPP+ IRP++ + S ED
Sbjct: 181 LTPSDIRERLERIPDSDVELLGYDPTTSRPEWIILTVLPVPPITIRPSIMIE-SGIRAED 239
Query: 349 DLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLA-STAK 525
DLT KL +IV +NE L +SI+ G P +++ D + LQ A + +++ LP + +
Sbjct: 240 DLTHKLVDIVRINERLKESIDAGAPQLIVEDLWDLLQYHVATYFDNEIPGLPTSKHRSGR 299
Query: 526 PLRGISQRL 552
PLR ++QRL
Sbjct: 300 PLRTLAQRL 308
[181][TOP]
>UniRef100_Q8MX30 DNA-directed RNA polymerase (Fragment) n=1 Tax=Naegleria gruberi
RepID=Q8MX30_NAEGR
Length = 1590
Score = 79.0 bits (193), Expect = 2e-13
Identities = 49/146 (33%), Positives = 81/146 (55%), Gaps = 1/146 (0%)
Frame = +1
Query: 118 KRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPL 297
K +A+ ++ L++ +L R L +F+ + AED+ L+ RPE +IL LP+PP
Sbjct: 118 KDTSAEAKQELTK--QELTAERALQIFKRIPAEDLELLGFDKDNARPEWMILTCLPIPPP 175
Query: 298 CIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARF 477
+RP+V SA +EDDLT KL +I+ N A+ K+ G P + + LQ A +
Sbjct: 176 QVRPSV-HHGSADRSEDDLTHKLADIIKANAAIQKNEKSGTPLHQMEEMVRMLQYHCATY 234
Query: 478 MNSDATNLPPLAS-TAKPLRGISQRL 552
+N++ +P + + +PL+ I QRL
Sbjct: 235 VNNEYPGVPTATTKSGRPLKSIRQRL 260
[182][TOP]
>UniRef100_Q0W8G9 DNA-directed RNA polymerase n=1 Tax=uncultured methanogenic
archaeon RC-I RepID=Q0W8G9_UNCMA
Length = 877
Score = 79.0 bits (193), Expect = 2e-13
Identities = 43/132 (32%), Positives = 73/132 (55%), Gaps = 1/132 (0%)
Frame = +1
Query: 160 GDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGS 339
G L P E + ED+ + M RPE ++L LPVPP+ +RP++ + S
Sbjct: 167 GHKLMPTDVRDRLEMIPDEDIEVFGMDPRNARPEWMVLTVLPVPPVTVRPSITLE-SGQR 225
Query: 340 TEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLA-S 516
+EDDLT KL +I+ +N+ ++ + G P +++ D E LQ +M++ + +PP
Sbjct: 226 SEDDLTHKLVDIIRINQRFQENRDAGAPQLIIEDLWELLQYHVTTYMDNAVSGVPPARHR 285
Query: 517 TAKPLRGISQRL 552
+ +PL+ +SQRL
Sbjct: 286 SGRPLKTLSQRL 297
[183][TOP]
>UniRef100_A5ULN6 DNA-directed RNA polymerase n=1 Tax=Methanobrevibacter smithii ATCC
35061 RepID=A5ULN6_METS3
Length = 894
Score = 79.0 bits (193), Expect = 2e-13
Identities = 41/119 (34%), Positives = 72/119 (60%), Gaps = 1/119 (0%)
Frame = +1
Query: 199 EAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIV 378
E ++ ED ++ + RPE L+L LPVPP+ +RP++ D S EDDLT KL +I+
Sbjct: 185 ERISDEDAFVLGVNPEVARPEWLVLTVLPVPPVTVRPSITLDTGERS-EDDLTHKLVDIL 243
Query: 379 HMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLA-STAKPLRGISQRL 552
+N+ L +++ G P +++ D E LQ + +++A+ +PP + +PL+ ++QRL
Sbjct: 244 RINQRLIENMEAGAPQLIVEDLWELLQYHVTTYFDNEASGVPPARHRSGRPLKTLAQRL 302
[184][TOP]
>UniRef100_C7NTX8 DNA-directed RNA polymerase subunit A' n=1 Tax=Halorhabdus
utahensis DSM 12940 RepID=C7NTX8_HALUD
Length = 1013
Score = 79.0 bits (193), Expect = 2e-13
Identities = 46/131 (35%), Positives = 71/131 (54%), Gaps = 1/131 (0%)
Frame = +1
Query: 163 DDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGST 342
D L P FE + +D+ I + RPE +IL LPVPP+ RP++ D S
Sbjct: 287 DKLMPSDIRDWFEEIPDDDLEAIGVNPETSRPEWMILTVLPVPPVTARPSITLDNGQRS- 345
Query: 343 EDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLA-ST 519
EDDLT KL +I+ +N+ ++ G P +++ D E LQ FM+++ + PP +
Sbjct: 346 EDDLTHKLVDIIRINQRFMENREAGAPQLIIEDLWELLQYHVTTFMDNEISGTPPARHRS 405
Query: 520 AKPLRGISQRL 552
+PL+ +SQRL
Sbjct: 406 GRPLKTLSQRL 416
[185][TOP]
>UniRef100_B9AEP6 DNA-directed RNA polymerase n=1 Tax=Methanobrevibacter smithii DSM
2375 RepID=B9AEP6_METSM
Length = 894
Score = 79.0 bits (193), Expect = 2e-13
Identities = 41/119 (34%), Positives = 72/119 (60%), Gaps = 1/119 (0%)
Frame = +1
Query: 199 EAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIV 378
E ++ ED ++ + RPE L+L LPVPP+ +RP++ D S EDDLT KL +I+
Sbjct: 185 ERISDEDAFVLGVNPEVARPEWLVLTVLPVPPVTVRPSITLDTGERS-EDDLTHKLVDIL 243
Query: 379 HMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLA-STAKPLRGISQRL 552
+N+ L +++ G P +++ D E LQ + +++A+ +PP + +PL+ ++QRL
Sbjct: 244 RINQRLIENMEAGAPQLIVEDLWELLQYHVTTYFDNEASGVPPARHRSGRPLKTLAQRL 302
[186][TOP]
>UniRef100_B9PZ91 DNA-directed RNA polymerase n=1 Tax=Toxoplasma gondii GT1
RepID=B9PZ91_TOXGO
Length = 1747
Score = 78.2 bits (191), Expect = 4e-13
Identities = 50/135 (37%), Positives = 75/135 (55%), Gaps = 3/135 (2%)
Frame = +1
Query: 157 VGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAG 336
V DDL+PL L E + + ++D+ + PE+L+L L VPP CIRP+V G
Sbjct: 291 VEDDLDPLYVKNLLERIRPSECEILDIVS----PEKLLLSRLLVPPSCIRPSVTIGEQ-G 345
Query: 337 STEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLAS 516
+TEDDLT L++I +N L + G + E+LQ++ R +N+DA + L +
Sbjct: 346 TTEDDLTCVLSDIAELNNVLQSHVQAGFHTNQFLGIWEFLQLQCTRLINADAPAVSQLLA 405
Query: 517 T---AKPLRGISQRL 552
+ +KP RGI QRL
Sbjct: 406 SKNISKPGRGICQRL 420
[187][TOP]
>UniRef100_B6KRB8 DNA-directed RNA polymerase n=2 Tax=Toxoplasma gondii
RepID=B6KRB8_TOXGO
Length = 1746
Score = 78.2 bits (191), Expect = 4e-13
Identities = 50/135 (37%), Positives = 75/135 (55%), Gaps = 3/135 (2%)
Frame = +1
Query: 157 VGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAG 336
V DDL+PL L E + + ++D+ + PE+L+L L VPP CIRP+V G
Sbjct: 290 VEDDLDPLYVKNLLERIRPSECEILDIVS----PEKLLLSRLLVPPSCIRPSVTIGEQ-G 344
Query: 337 STEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLAS 516
+TEDDLT L++I +N L + G + E+LQ++ R +N+DA + L +
Sbjct: 345 TTEDDLTCVLSDIAELNNVLQSHVKAGFHTNQFLGIWEFLQLQCTRLINADAPAVSQLLA 404
Query: 517 T---AKPLRGISQRL 552
+ +KP RGI QRL
Sbjct: 405 SKNISKPGRGICQRL 419
[188][TOP]
>UniRef100_A2BN34 DNA-directed RNA polymerase n=1 Tax=Hyperthermus butylicus DSM 5456
RepID=A2BN34_HYPBU
Length = 881
Score = 78.2 bits (191), Expect = 4e-13
Identities = 44/129 (34%), Positives = 69/129 (53%), Gaps = 1/129 (0%)
Frame = +1
Query: 169 LNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTED 348
LNPL + E + +D L+ RPE ++L LPVPP+ +RP++ + ED
Sbjct: 177 LNPLEIRSRLERVPNDDARLLGFDPESARPEWMVLTVLPVPPIHVRPSIVLETGI-RAED 235
Query: 349 DLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLAST-AK 525
DLT KL +IV NE L + I+ G P L+ + LQ A + +++ +P +
Sbjct: 236 DLTHKLADIVRTNERLRELIDSGAPQTLIDEHWTLLQYHVATYFDNELPRIPVARHRGGR 295
Query: 526 PLRGISQRL 552
PL+G++QRL
Sbjct: 296 PLKGLAQRL 304
[189][TOP]
>UniRef100_C7DHC4 DNA-directed RNA polymerase n=1 Tax=Candidatus Micrarchaeum
acidiphilum ARMAN-2 RepID=C7DHC4_9EURY
Length = 844
Score = 78.2 bits (191), Expect = 4e-13
Identities = 44/132 (33%), Positives = 73/132 (55%), Gaps = 1/132 (0%)
Frame = +1
Query: 160 GDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGS 339
G+ + P +T ED+ + +M A RPE +L L VPP+ +RP++ + S
Sbjct: 174 GNKMKPDEIRDWLSGITDEDLKMFNMDAKAARPEWFVLTALLVPPVNVRPSITLE-SGER 232
Query: 340 TEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLA-S 516
+EDDLT KL EI+ +N+ L + I+ G P +++ D E LQ + N++ +P
Sbjct: 233 SEDDLTHKLVEIMRINQRLEQDIDAGAPQIIIDDLWELLQYHVTTYFNNETPGVPVARHR 292
Query: 517 TAKPLRGISQRL 552
+ +PL+ I+QRL
Sbjct: 293 STRPLKTIAQRL 304
[190][TOP]
>UniRef100_UPI00016E658E UPI00016E658E related cluster n=1 Tax=Takifugu rubripes
RepID=UPI00016E658E
Length = 1628
Score = 77.8 bits (190), Expect = 5e-13
Identities = 51/189 (26%), Positives = 92/189 (48%), Gaps = 8/189 (4%)
Frame = +1
Query: 10 GGRGAARSINLYKKPTKTELREQAKSAAMESAYGDAKRNNADLERHLSRVGDD------- 168
GG + ++ T+ ++ ++ +R+ +L V +D
Sbjct: 154 GGEEMDNKFGMEQQETEEDITKEKGHGGCGRYQPRIRRSGLELYAEWKHVNEDSQEKKIL 213
Query: 169 LNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTED 348
L+P R +F+ ++ E+ ++ M + RPE +I+ LPVPPL +RP V SA +D
Sbjct: 214 LSPERVHEIFKRISDEEDIILGMDSKFARPEWMIVTVLPVPPLAVRPAVVMQGSA-RNQD 272
Query: 349 DLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLP-PLASTAK 525
DLT KL +IV +N L ++ G A ++ + + LQ A ++++ LP + + +
Sbjct: 273 DLTHKLADIVKINNQLRRNEQSGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGR 332
Query: 526 PLRGISQRL 552
PL+ I QRL
Sbjct: 333 PLKSIKQRL 341
[191][TOP]
>UniRef100_Q976A5 DNA-directed RNA polymerase n=1 Tax=Sulfolobus tokodaii
RepID=Q976A5_SULTO
Length = 884
Score = 77.8 bits (190), Expect = 5e-13
Identities = 45/129 (34%), Positives = 71/129 (55%), Gaps = 1/129 (0%)
Frame = +1
Query: 169 LNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTED 348
L P E + D L+ RPE +IL LPVPP+ IRP++ + S ED
Sbjct: 179 LTPSDIRERLERIPDSDYELLGYDPKYSRPEWMILTVLPVPPITIRPSITIE-SGIRAED 237
Query: 349 DLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLA-STAK 525
DLT KL +I+ +NE L +SI+ G P +++ D + LQ + + +++ +PP + +
Sbjct: 238 DLTHKLVDIIRINERLKESIDAGAPQLIIEDLWDLLQYHVSTYFDNEIPGIPPAKHRSGR 297
Query: 526 PLRGISQRL 552
PLR ++QRL
Sbjct: 298 PLRTLAQRL 306
[192][TOP]
>UniRef100_C5A208 DNA-directed RNA polymerase n=1 Tax=Thermococcus gammatolerans EJ3
RepID=C5A208_THEGJ
Length = 905
Score = 77.8 bits (190), Expect = 5e-13
Identities = 40/119 (33%), Positives = 70/119 (58%), Gaps = 1/119 (0%)
Frame = +1
Query: 199 EAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIV 378
E + +D+ L+ + RPE +IL LPVPP+ +RP++ + S EDDLT KL +I+
Sbjct: 191 ERIPDKDLPLLGLHPEKSRPEWMILTVLPVPPVTMRPSITLE-SGIRAEDDLTHKLVDII 249
Query: 379 HMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLA-STAKPLRGISQRL 552
+N L +I G P +++ D + LQ ++N++ + +PP + +PL+ ++QRL
Sbjct: 250 RINNRLKSNIEAGAPQLIIEDLWDLLQYHVTTYINNETSGIPPAKHKSGRPLKTLAQRL 308
[193][TOP]
>UniRef100_A6UV50 DNA-directed RNA polymerase n=1 Tax=Methanococcus aeolicus Nankai-3
RepID=A6UV50_META3
Length = 888
Score = 77.8 bits (190), Expect = 5e-13
Identities = 44/121 (36%), Positives = 71/121 (58%), Gaps = 1/121 (0%)
Frame = +1
Query: 193 LFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTE 372
+ E + ED LI + RPE +IL LPVPP+ +RP++ + S +EDDLT KL +
Sbjct: 186 ILEKIPDEDCMLIGVNPEVARPEWMILTSLPVPPVTVRPSITLE-SGERSEDDLTHKLVD 244
Query: 373 IVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLA-STAKPLRGISQR 549
I+ +N+ L ++I G P +++ D + LQ + +++A PP + +PLR I+QR
Sbjct: 245 IIRINQRLDENIEGGAPNLIIEDLWDLLQYHINTYFDNEAPGTPPARHRSGRPLRTIAQR 304
Query: 550 L 552
L
Sbjct: 305 L 305
[194][TOP]
>UniRef100_UPI0001B119CD RNA polymerase alpha subunit n=1 Tax=Methanocaldococcus vulcanius
M7 RepID=UPI0001B119CD
Length = 1234
Score = 77.4 bits (189), Expect = 7e-13
Identities = 43/129 (33%), Positives = 71/129 (55%), Gaps = 1/129 (0%)
Frame = +1
Query: 169 LNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTED 348
L P + E + ED L+ + RPE ++L LPVPP+ +RP++ D S ED
Sbjct: 71 LTPSDVREILEKIPDEDCILLGINPEVARPEWMVLTVLPVPPVTVRPSITLDTGERS-ED 129
Query: 349 DLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLA-STAK 525
DLT KL +I+ +N L ++I G P +++ D LQ + +++A +PP + +
Sbjct: 130 DLTHKLVDIIRINNRLEENIEGGAPNLIIEDLWNLLQYHINTYFDNEAPGIPPAKHRSGR 189
Query: 526 PLRGISQRL 552
PL+ ++QRL
Sbjct: 190 PLKTLAQRL 198
[195][TOP]
>UniRef100_B9FFW1 DNA-directed RNA polymerase n=1 Tax=Oryza sativa Japonica Group
RepID=B9FFW1_ORYSJ
Length = 1321
Score = 77.4 bits (189), Expect = 7e-13
Identities = 47/128 (36%), Positives = 72/128 (56%)
Frame = +1
Query: 169 LNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTED 348
L+P L+LF+ MT ED L+++ G RPE+LI+ + VPP+ IRP+V S ED
Sbjct: 216 LDPAIVLSLFKRMTDEDCELLNL---GDRPEKLIVTEIAVPPVPIRPSVFVAGGRMSNED 272
Query: 349 DLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLASTAKP 528
+T+ L I + N L +++ GG + D + LQ++ ++NSDA +LP
Sbjct: 273 SITVILKSIANTNSILKENLQTGGQFMKCFDCWQHLQLQVVEYINSDAPSLP-----ESQ 327
Query: 529 LRGISQRL 552
RG+ QRL
Sbjct: 328 HRGLVQRL 335
[196][TOP]
>UniRef100_Q7X881 DNA-directed RNA polymerase n=3 Tax=Oryza sativa RepID=Q7X881_ORYSJ
Length = 1383
Score = 77.4 bits (189), Expect = 7e-13
Identities = 47/128 (36%), Positives = 72/128 (56%)
Frame = +1
Query: 169 LNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTED 348
L+P L+LF+ MT ED L+++ G RPE+LI+ + VPP+ IRP+V S ED
Sbjct: 215 LDPAIVLSLFKRMTDEDCELLNL---GDRPEKLIVTEIAVPPVPIRPSVFVAGGRMSNED 271
Query: 349 DLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLASTAKP 528
+T+ L I + N L +++ GG + D + LQ++ ++NSDA +LP
Sbjct: 272 SITVILKSIANTNSILKENLQTGGQFMKCFDCWQHLQLQVVEYINSDAPSLP-----ESQ 326
Query: 529 LRGISQRL 552
RG+ QRL
Sbjct: 327 HRGLVQRL 334
[197][TOP]
>UniRef100_A8X1M6 DNA-directed RNA polymerase n=1 Tax=Caenorhabditis briggsae
RepID=A8X1M6_CAEBR
Length = 1435
Score = 77.4 bits (189), Expect = 7e-13
Identities = 44/104 (42%), Positives = 63/104 (60%), Gaps = 1/104 (0%)
Frame = +1
Query: 169 LNPLRTLALFEAMTAEDVALIDMRAVGGR-PERLILRYLPVPPLCIRPTVCSDPSAGSTE 345
LNPL LF + D+ ++ +R+ + P L+L +PVPP+CIRP+V S+ +G+TE
Sbjct: 225 LNPLFVQKLFANIKEADIPVLMVRSGEEKHPNDLLLTRMPVPPVCIRPSVVSEVKSGTTE 284
Query: 346 DDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARF 477
DD+TMKL EI+ N+ L K G PA L + E LQV + F
Sbjct: 285 DDVTMKLMEIMLTNDVLKKHKRDGAPAKTLFETWEHLQVWSLSF 328
[198][TOP]
>UniRef100_Q2PYS4 DNA-directed RNA polymerase (Fragment) n=1 Tax=Spizellomyces
punctatus RepID=Q2PYS4_SPIPN
Length = 792
Score = 77.4 bits (189), Expect = 7e-13
Identities = 45/121 (37%), Positives = 68/121 (56%), Gaps = 1/121 (0%)
Frame = +1
Query: 193 LFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTE 372
LF+ ++ +D + + RPE +I+ LPVPP+ +RP V D A + +DDLT KL +
Sbjct: 139 LFQKISEDDCMSLGLNPDWARPEWMIITVLPVPPMAVRPAVSMDGVA-TNQDDLTHKLRD 197
Query: 373 IVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPP-LASTAKPLRGISQR 549
IV N L K G PA ++ + + LQ A +M++D LPP L + +PL+ I R
Sbjct: 198 IVLANSFLRKHETEGSPAHVINEFEKLLQYHIATYMDNDIAGLPPSLQKSGRPLKSIRAR 257
Query: 550 L 552
L
Sbjct: 258 L 258
[199][TOP]
>UniRef100_O59227 DNA-directed RNA polymerase n=1 Tax=Pyrococcus horikoshii
RepID=O59227_PYRHO
Length = 907
Score = 77.4 bits (189), Expect = 7e-13
Identities = 38/119 (31%), Positives = 71/119 (59%), Gaps = 1/119 (0%)
Frame = +1
Query: 199 EAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIV 378
E + +D+ L+ + RPE ++L LPVPP+ +RP++ + + EDDLT KL +I+
Sbjct: 191 EKIPDKDLPLLGLHPEKSRPEWMVLTVLPVPPVTVRPSITLETGIRA-EDDLTHKLVDII 249
Query: 379 HMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLA-STAKPLRGISQRL 552
+N L ++I G P +++ D + LQ ++N++ + +PP + +PL+ ++QRL
Sbjct: 250 RINNRLRQNIEAGAPQLIIEDLWDLLQYHVTTYINNETSGVPPAKHKSGRPLKTLAQRL 308
[200][TOP]
>UniRef100_B6YT16 DNA-directed RNA polymerase n=1 Tax=Thermococcus onnurineus NA1
RepID=B6YT16_THEON
Length = 905
Score = 77.4 bits (189), Expect = 7e-13
Identities = 39/119 (32%), Positives = 70/119 (58%), Gaps = 1/119 (0%)
Frame = +1
Query: 199 EAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIV 378
E + +D+ L+ + RPE ++L LPVPP+ +RP++ + S EDDLT KL +I+
Sbjct: 191 EKIPDKDLPLLGLHPEKARPEWMVLTVLPVPPVTMRPSITLE-SGIRAEDDLTHKLVDII 249
Query: 379 HMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLA-STAKPLRGISQRL 552
+N L +I G P +++ D + LQ ++N++ + +PP + +PL+ ++QRL
Sbjct: 250 RINNRLKSNIEAGAPQLIIEDLWDLLQYHVTTYINNETSGIPPAKHKSGRPLKTLAQRL 308
[201][TOP]
>UniRef100_C9RDK8 DNA-directed RNA polymerase subunit A' n=1 Tax=Methanocaldococcus
vulcanius M7 RepID=C9RDK8_9EURY
Length = 1343
Score = 77.4 bits (189), Expect = 7e-13
Identities = 43/129 (33%), Positives = 71/129 (55%), Gaps = 1/129 (0%)
Frame = +1
Query: 169 LNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTED 348
L P + E + ED L+ + RPE ++L LPVPP+ +RP++ D S ED
Sbjct: 180 LTPSDVREILEKIPDEDCILLGINPEVARPEWMVLTVLPVPPVTVRPSITLDTGERS-ED 238
Query: 349 DLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLA-STAK 525
DLT KL +I+ +N L ++I G P +++ D LQ + +++A +PP + +
Sbjct: 239 DLTHKLVDIIRINNRLEENIEGGAPNLIIEDLWNLLQYHINTYFDNEAPGIPPAKHRSGR 298
Query: 526 PLRGISQRL 552
PL+ ++QRL
Sbjct: 299 PLKTLAQRL 307
[202][TOP]
>UniRef100_B7R289 DNA-directed RNA polymerase n=1 Tax=Thermococcus sp. AM4
RepID=B7R289_9EURY
Length = 905
Score = 77.4 bits (189), Expect = 7e-13
Identities = 40/119 (33%), Positives = 70/119 (58%), Gaps = 1/119 (0%)
Frame = +1
Query: 199 EAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIV 378
E + +D+ L+ + RPE +IL LPVPP+ +RP++ + S EDDLT KL +I+
Sbjct: 191 ERIPDKDLPLLGLHPEKSRPEWMILTVLPVPPVTMRPSITLE-SGIRAEDDLTHKLVDII 249
Query: 379 HMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLA-STAKPLRGISQRL 552
+N L +I G P +++ D + LQ ++N++ + +PP + +PL+ ++QRL
Sbjct: 250 RINNRLKSNIEAGAPQLIIEDLWDLLQYHVTTYINNETSGVPPAKHKSGRPLKTLAQRL 308
[203][TOP]
>UniRef100_UPI00017B0A92 UPI00017B0A92 related cluster n=1 Tax=Tetraodon nigroviridis
RepID=UPI00017B0A92
Length = 1714
Score = 77.0 bits (188), Expect = 9e-13
Identities = 51/189 (26%), Positives = 91/189 (48%), Gaps = 8/189 (4%)
Frame = +1
Query: 10 GGRGAARSINLYKKPTKTELREQAKSAAMESAYGDAKRNNADLERHLSRVGDD------- 168
GG + ++ T+ ++ ++ +R+ +L V +D
Sbjct: 134 GGEEMDNKFGMEQQETEEDITKEKGHGGCGRYQPRIRRSGLELYAEWKHVNEDSQEKKIL 193
Query: 169 LNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTED 348
L+P R +F+ ++ E+ ++ M RPE +I+ LPVPPL +RP V SA +D
Sbjct: 194 LSPERVHEIFKRISDEEDMILGMDPKFARPEWMIVTVLPVPPLAVRPAVVMQGSA-RNQD 252
Query: 349 DLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLP-PLASTAK 525
DLT KL +IV +N L ++ G A ++ + + LQ A ++++ LP + + +
Sbjct: 253 DLTHKLADIVKINNQLRRNEQSGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGR 312
Query: 526 PLRGISQRL 552
PL+ I QRL
Sbjct: 313 PLKSIKQRL 321
[204][TOP]
>UniRef100_B8BQ02 DNA-directed RNA polymerase n=1 Tax=Thalassiosira pseudonana
CCMP1335 RepID=B8BQ02_THAPS
Length = 1627
Score = 77.0 bits (188), Expect = 9e-13
Identities = 45/144 (31%), Positives = 79/144 (54%), Gaps = 4/144 (2%)
Frame = +1
Query: 133 DLERHLSRVGDD---LNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCI 303
++ER GD ++ + + +F+ M ++V + + RPE + + +PVPPL +
Sbjct: 191 EMERVPGSSGDKKQFMSAQKAVDIFKKMRDDEVKALGLDVTWARPEWMCVSVMPVPPLHV 250
Query: 304 RPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMN 483
RP+V A S+EDDLT +L IV N AL +I G P +++ + LQ A F+N
Sbjct: 251 RPSVVMGGGAQSSEDDLTHQLVNIVKSNIALKTAIQNGEPNIIVEQFEQALQHNVAAFVN 310
Query: 484 SDATNLPPLAS-TAKPLRGISQRL 552
++ +P + + +PL+ ++QRL
Sbjct: 311 NEMRGMPQITQRSGRPLKTLAQRL 334
[205][TOP]
>UniRef100_Q8IE49 DNA-directed RNA polymerase n=1 Tax=Plasmodium falciparum 3D7
RepID=Q8IE49_PLAF7
Length = 2356
Score = 77.0 bits (188), Expect = 9e-13
Identities = 51/133 (38%), Positives = 73/133 (54%), Gaps = 3/133 (2%)
Frame = +1
Query: 163 DDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGST 342
+DLN L L LF+ + V L+++ PE+LI+ L VPP IRP+V D G+
Sbjct: 216 EDLNSLYVLKLFKNINPYHVKLLNIE----NPEKLIITALLVPPNTIRPSVIIDEH-GTA 270
Query: 343 EDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLAST- 519
EDDLT L+EI +N + G + E+LQ++ RF+NSD+ + L +T
Sbjct: 271 EDDLTCILSEITQLNNTIYNQCTNGYQTNQFLGNVEFLQLQITRFINSDSPAVSQLLATQ 330
Query: 520 --AKPLRGISQRL 552
+KP RGI QRL
Sbjct: 331 NISKPGRGICQRL 343
[206][TOP]
>UniRef100_Q25151 DNA-directed RNA polymerase (Fragment) n=1 Tax=Helobdella stagnalis
RepID=Q25151_9ANNE
Length = 1337
Score = 77.0 bits (188), Expect = 9e-13
Identities = 51/153 (33%), Positives = 78/153 (50%), Gaps = 8/153 (5%)
Frame = +1
Query: 118 KRNNADLERHLSRVGDD-------LNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILR 276
+RN +L ++ DD L R L +F+A+T E ++ M RP+ LI
Sbjct: 99 RRNLLELTAEWKQINDDNQEKKMILTAERVLEIFKAITDETCTILGMDPKYARPDWLIAT 158
Query: 277 YLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWL 456
LPVPPL +RP V SA +DDLT KL +I+ +N L ++ G A +L + + L
Sbjct: 159 MLPVPPLPVRPAVVMFGSA-KNQDDLTHKLADIIKINNQLKRNEMNGAAAHILAEDTKML 217
Query: 457 QVEAARFMNSDATNLP-PLASTAKPLRGISQRL 552
Q A ++++ LP + +PL+ I QRL
Sbjct: 218 QFHVATMIDNEMPGLPRATQKSGRPLKSIKQRL 250
[207][TOP]
>UniRef100_Q0U9K8 DNA-directed RNA polymerase n=1 Tax=Phaeosphaeria nodorum
RepID=Q0U9K8_PHANO
Length = 1720
Score = 77.0 bits (188), Expect = 9e-13
Identities = 53/184 (28%), Positives = 86/184 (46%), Gaps = 3/184 (1%)
Frame = +1
Query: 10 GGRGAARSINLYKKPTKTELREQAKSAAMESAYGDAKRNNADLERHLSRVGDDLNPLRTL 189
GG G + K+ K + K GD K + L P L
Sbjct: 175 GGCGNTNPDTIRKEGVKLTATYKPKKGEDSDGQGDRK--------------EVLTPQHAL 220
Query: 190 ALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGST--EDDLTMK 363
+F+ ++ +AL+ + A RPE +I+ LPVPP +RP++ D + EDDLT K
Sbjct: 221 NVFKLLSDNTLALLGLNADYARPEWMIMTVLPVPPPPVRPSISVDGTGQGMRGEDDLTYK 280
Query: 364 LTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPL-ASTAKPLRGI 540
L +I+ N+ + + I+ G P +L + +Q A +M++DA +PP + +PL+ I
Sbjct: 281 LGDIIRANQRVQECISEGAPQHILNEFEALVQYHVATYMDNDANGIPPSNQKSGRPLKTI 340
Query: 541 SQRL 552
RL
Sbjct: 341 RGRL 344
[208][TOP]
>UniRef100_Q5JE33 DNA-directed RNA polymerase n=1 Tax=Thermococcus kodakarensis
RepID=Q5JE33_PYRKO
Length = 906
Score = 77.0 bits (188), Expect = 9e-13
Identities = 39/119 (32%), Positives = 70/119 (58%), Gaps = 1/119 (0%)
Frame = +1
Query: 199 EAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIV 378
E + +D+ L+ + RPE ++L LPVPP+ +RP++ + S EDDLT KL +I+
Sbjct: 191 EKIPDKDLPLLGLHPEKSRPEWMVLTVLPVPPVTMRPSITLE-SGIRAEDDLTHKLVDII 249
Query: 379 HMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLA-STAKPLRGISQRL 552
+N L +I G P +++ D + LQ ++N++ + +PP + +PL+ ++QRL
Sbjct: 250 RINNRLKSNIEAGAPQLIIEDLWDLLQYHVTTYINNETSGVPPAKHKSGRPLKTLAQRL 308
[209][TOP]
>UniRef100_Q18EX6 DNA-directed RNA polymerase n=1 Tax=Haloquadratum walsbyi DSM 16790
RepID=Q18EX6_HALWD
Length = 978
Score = 77.0 bits (188), Expect = 9e-13
Identities = 43/134 (32%), Positives = 75/134 (55%), Gaps = 4/134 (2%)
Frame = +1
Query: 163 DDLNPLRTLAL---FEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSA 333
+D+N L + FE++ ED+ + + RPE +++ LPVPP+ RP++ D
Sbjct: 242 EDMNKLMASDIRDWFESIPDEDIRTLGIDPSRARPEWMVMTVLPVPPVTARPSITLDNGQ 301
Query: 334 GSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLA 513
S EDDLT KL +I+ +N+ ++ G P +++ D E LQ F++++ + PP
Sbjct: 302 RS-EDDLTHKLVDIIRINQRFMENREAGAPQLIIEDLWELLQYHVTTFIDNEISGTPPAR 360
Query: 514 -STAKPLRGISQRL 552
+ +PL+ +SQRL
Sbjct: 361 HRSGRPLKTLSQRL 374
[210][TOP]
>UniRef100_A0RXW9 DNA-directed RNA polymerase n=1 Tax=Cenarchaeum symbiosum
RepID=A0RXW9_CENSY
Length = 1260
Score = 77.0 bits (188), Expect = 9e-13
Identities = 43/136 (31%), Positives = 78/136 (57%), Gaps = 2/136 (1%)
Frame = +1
Query: 151 SRVGDD-LNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDP 327
+ +G++ L P+ F +T ED+ L+ RPE IL+ LPVPP+ +RP++ +
Sbjct: 171 TEIGENRLLPITIREKFSQITNEDLVLLGYDPATARPEWFILQALPVPPVTVRPSIILET 230
Query: 328 SAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPP 507
S EDDLT K+ +I+ +N+ L +S G P +++ D + LQ A + +++ + +P
Sbjct: 231 GIRS-EDDLTHKMVDIIRVNQRLKESKEAGTPPLIVQDLVDLLQYHATTYFDNEISGIPQ 289
Query: 508 L-ASTAKPLRGISQRL 552
+ +PL+ ++QRL
Sbjct: 290 AHHRSGRPLKTLTQRL 305
[211][TOP]
>UniRef100_C1V769 DNA-directed RNA polymerase n=1 Tax=Halogeometricum borinquense DSM
11551 RepID=C1V769_9EURY
Length = 978
Score = 77.0 bits (188), Expect = 9e-13
Identities = 45/134 (33%), Positives = 74/134 (55%), Gaps = 4/134 (2%)
Frame = +1
Query: 163 DDLNPLRTLAL---FEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSA 333
+D+N L + FE + ED+ + + RPE +IL LPVPP+ RP++ D
Sbjct: 242 EDMNKLMPSDIRDWFEDIPDEDIVTLGIDPSRARPEWMILTVLPVPPVTARPSITLDNGQ 301
Query: 334 GSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLA 513
S EDDLT KL +I+ +N+ ++ G P +++ D E LQ F++++ + PP
Sbjct: 302 RS-EDDLTHKLVDIIRINQRFMENREAGAPQLIIEDLWELLQYHVTTFIDNEISGTPPAR 360
Query: 514 -STAKPLRGISQRL 552
+ +PL+ +SQRL
Sbjct: 361 HRSGRPLKTLSQRL 374
[212][TOP]
>UniRef100_P27625 DNA-directed RNA polymerase III subunit RPC1 n=1 Tax=Plasmodium
falciparum RepID=RPC1_PLAFA
Length = 2339
Score = 77.0 bits (188), Expect = 9e-13
Identities = 51/133 (38%), Positives = 73/133 (54%), Gaps = 3/133 (2%)
Frame = +1
Query: 163 DDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGST 342
+DLN L L LF+ + V L+++ PE+LI+ L VPP IRP+V D G+
Sbjct: 216 EDLNSLYVLKLFKNINPYHVKLLNIE----NPEKLIITALLVPPNTIRPSVIIDEH-GTA 270
Query: 343 EDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLAST- 519
EDDLT L+EI +N + G + E+LQ++ RF+NSD+ + L +T
Sbjct: 271 EDDLTCILSEITQLNNTIYNQCTNGYQTNQFLGNVEFLQLQITRFINSDSPAVSQLLATQ 330
Query: 520 --AKPLRGISQRL 552
+KP RGI QRL
Sbjct: 331 NISKPGRGICQRL 343
[213][TOP]
>UniRef100_Q8U0M4 DNA-directed RNA polymerase n=1 Tax=Pyrococcus furiosus
RepID=Q8U0M4_PYRFU
Length = 907
Score = 76.6 bits (187), Expect = 1e-12
Identities = 41/129 (31%), Positives = 72/129 (55%), Gaps = 1/129 (0%)
Frame = +1
Query: 169 LNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTED 348
L P E + +D+ L+ + RPE ++L LPVPP+ RP++ + + ED
Sbjct: 178 LMPTEVRDWLEKIPDKDLPLLGLDPEKSRPEWMVLTVLPVPPVTARPSITLETGIRA-ED 236
Query: 349 DLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLA-STAK 525
DLT KL +I+ +N L ++I G P +++ D + LQ ++N++A +PP + +
Sbjct: 237 DLTHKLVDIIRINNRLKQNIEAGAPQLIIEDLWDLLQYHVTTYINNEAPGVPPAKHKSGR 296
Query: 526 PLRGISQRL 552
PL+ ++QRL
Sbjct: 297 PLKTLAQRL 305
[214][TOP]
>UniRef100_Q2NEK4 DNA-directed RNA polymerase n=1 Tax=Methanosphaera stadtmanae DSM
3091 RepID=Q2NEK4_METST
Length = 873
Score = 76.6 bits (187), Expect = 1e-12
Identities = 40/119 (33%), Positives = 70/119 (58%), Gaps = 1/119 (0%)
Frame = +1
Query: 199 EAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIV 378
E + ED I + RPE ++L LPVPP+ +RP++ + S EDDLT KL +I+
Sbjct: 181 EMIPEEDYIFIGINPKVARPEWMVLTVLPVPPVTVRPSITLETGERS-EDDLTHKLVDIL 239
Query: 379 HMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLA-STAKPLRGISQRL 552
+N+ L +++ G P +++ D E LQ + +++A+ +PP + +PL+ ++QRL
Sbjct: 240 RINQRLKENMEAGAPQLIVEDLWELLQYHVTTYFDNEASGVPPARHRSGRPLKTLAQRL 298
[215][TOP]
>UniRef100_C6A1G0 DNA-directed RNA polymerase n=1 Tax=Thermococcus sibiricus MM 739
RepID=C6A1G0_THESM
Length = 905
Score = 76.6 bits (187), Expect = 1e-12
Identities = 38/119 (31%), Positives = 70/119 (58%), Gaps = 1/119 (0%)
Frame = +1
Query: 199 EAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIV 378
E + +D+ L+ + RPE ++L LPVPP+ +RP++ + S EDDLT KL +I+
Sbjct: 191 EKIPDKDLPLLGLNPENSRPEWMVLTVLPVPPVSVRPSITLE-SGIRAEDDLTHKLVDII 249
Query: 379 HMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLA-STAKPLRGISQRL 552
+N L ++I G P +++ D + LQ + +++ + +PP + +PL+ ++QRL
Sbjct: 250 RINARLKQNIEAGAPQLIIEDLWDLLQYHVTTYFDNETSGIPPAKHKSGRPLKTLAQRL 308
[216][TOP]
>UniRef100_C7P941 DNA-directed RNA polymerase subunit A' n=1 Tax=Methanocaldococcus
fervens AG86 RepID=C7P941_METFA
Length = 891
Score = 76.6 bits (187), Expect = 1e-12
Identities = 42/129 (32%), Positives = 71/129 (55%), Gaps = 1/129 (0%)
Frame = +1
Query: 169 LNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTED 348
L P + E + ED L+ + RPE ++L LPVPP+ +RP++ + S ED
Sbjct: 180 LTPSDVREILEKIPDEDCILLGLNPEVARPEWMVLTVLPVPPVTVRPSITLETGERS-ED 238
Query: 349 DLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLA-STAK 525
DLT KL +I+ +N L ++I G P +++ D LQ + +++A +PP + +
Sbjct: 239 DLTHKLVDIIRINNRLEENIEGGAPNLIIEDLWNLLQYHVNTYFDNEAPGIPPAKHRSGR 298
Query: 526 PLRGISQRL 552
PL+ ++QRL
Sbjct: 299 PLKTLAQRL 307
[217][TOP]
>UniRef100_Q58445 Mja rpoA1 intein n=1 Tax=Methanocaldococcus jannaschii
RepID=RPOA1_METJA
Length = 1341
Score = 76.6 bits (187), Expect = 1e-12
Identities = 42/129 (32%), Positives = 71/129 (55%), Gaps = 1/129 (0%)
Frame = +1
Query: 169 LNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTED 348
L P + E + ED L+ + RPE ++L LPVPP+ +RP++ + S ED
Sbjct: 178 LTPSDVREILEKIPDEDCILLGLNPEVARPEWMVLTVLPVPPVTVRPSITLETGERS-ED 236
Query: 349 DLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLA-STAK 525
DLT KL +I+ +N L ++I G P +++ D LQ + +++A +PP + +
Sbjct: 237 DLTHKLVDIIRINNRLEENIEGGAPNLIIEDLWNLLQYHVNTYFDNEAPGIPPAKHRSGR 296
Query: 526 PLRGISQRL 552
PL+ ++QRL
Sbjct: 297 PLKTLAQRL 305
[218][TOP]
>UniRef100_P16356 DNA-directed RNA polymerase II subunit RPB1 n=1 Tax=Caenorhabditis
elegans RepID=RPB1_CAEEL
Length = 1852
Score = 76.6 bits (187), Expect = 1e-12
Identities = 47/125 (37%), Positives = 68/125 (54%), Gaps = 1/125 (0%)
Frame = +1
Query: 181 RTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTM 360
R L +F+ +T ED+ +I M RPE +I LPVPPL +RP V + SA +DDLT
Sbjct: 214 RVLEVFQQITDEDILVIGMDPQFARPEWMICTVLPVPPLAVRPAVVTFGSA-KNQDDLTH 272
Query: 361 KLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLAST-AKPLRG 537
KL++I+ N+ L ++ G A +L D LQ A +++ LP +PL+
Sbjct: 273 KLSDIIKTNQQLQRNEANGAAAHVLTDDVRLLQFHVATLVDNCIPGLPTATQKGGRPLKS 332
Query: 538 ISQRL 552
I QRL
Sbjct: 333 IKQRL 337
[219][TOP]
>UniRef100_Q84KP6 DNA-directed RNA polymerase n=1 Tax=Cyanidioschyzon merolae
RepID=Q84KP6_CYAME
Length = 1819
Score = 76.3 bits (186), Expect = 1e-12
Identities = 48/141 (34%), Positives = 72/141 (51%), Gaps = 1/141 (0%)
Frame = +1
Query: 133 DLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPT 312
D E + +L R +F + ED+ L+ RPE ++L LPVPP +RP+
Sbjct: 199 DAEAFAAERKQELAAERVQQIFRHIRDEDLELLGFHPRFSRPEWMVLSVLPVPPPHVRPS 258
Query: 313 VCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDA 492
+ D + EDDLT KL +I+ N AL + G PA ++ + LQ A FMN+D
Sbjct: 259 IQMD-AVSRGEDDLTFKLGDIIKANNALQRLEAEGAPAHVIREQYVLLQFHVATFMNNDL 317
Query: 493 TNLP-PLASTAKPLRGISQRL 552
+P + +PL+ I+QRL
Sbjct: 318 PGMPRATLRSGRPLKSIAQRL 338
[220][TOP]
>UniRef100_Q70GL5 DNA-directed RNA polymerase (Fragment) n=1 Tax=Cercomonas sp. ATCC
50318 RepID=Q70GL5_9EUKA
Length = 417
Score = 76.3 bits (186), Expect = 1e-12
Identities = 46/129 (35%), Positives = 69/129 (53%), Gaps = 1/129 (0%)
Frame = +1
Query: 169 LNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTED 348
L+P + +F ++ ED + + V RP+ +L LPVPP +RP+V D SA D
Sbjct: 132 LSPSKIYDIFRNISDEDCRALGLDPVNARPDWFLLTVLPVPPPPVRPSVMFD-SATRASD 190
Query: 349 DLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLP-PLASTAK 525
DLT KL++IV +NE L K G +L D + LQ A +++ + LP + K
Sbjct: 191 DLTYKLSDIVKVNEQLKKQEAQGAAEHILQDSADVLQFHVATLFDNEISGLPRSTQRSGK 250
Query: 526 PLRGISQRL 552
P++ I QRL
Sbjct: 251 PIKSIRQRL 259
[221][TOP]
>UniRef100_B6JYP8 DNA-directed RNA polymerase n=1 Tax=Schizosaccharomyces japonicus
yFS275 RepID=B6JYP8_SCHJY
Length = 1748
Score = 76.3 bits (186), Expect = 1e-12
Identities = 46/150 (30%), Positives = 81/150 (54%), Gaps = 1/150 (0%)
Frame = +1
Query: 106 YGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLP 285
+G K+ D + R+ LNPL +F+ +++ED+ + + RP+ +I+ LP
Sbjct: 190 WGSWKKGKDDSDLPEKRL---LNPLEVHTIFKHISSEDLVYMGLNEQYARPDWMIITVLP 246
Query: 286 VPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVE 465
VPP +RP++ D S+ EDDLT KL++I+ N + + G PA ++ + + LQ
Sbjct: 247 VPPPSVRPSISVDGSSRG-EDDLTHKLSDIIKANANVRRCEQEGAPAHIVSEYEQLLQFH 305
Query: 466 AARFMNSDATNLP-PLASTAKPLRGISQRL 552
A +M+++ P L + +PL+ I RL
Sbjct: 306 VATYMDNEIAGQPQALQKSGRPLKSIRARL 335
[222][TOP]
>UniRef100_A5H290 DNA-directed RNA polymerase (Fragment) n=1 Tax=Physconia muscigena
RepID=A5H290_9LECA
Length = 391
Score = 76.3 bits (186), Expect = 1e-12
Identities = 45/130 (34%), Positives = 70/130 (53%), Gaps = 2/130 (1%)
Frame = +1
Query: 169 LNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGST-E 345
+ P LA+F M+ ED+ ++ M RPE +I+ LPVPP +RP++ D G T E
Sbjct: 141 ITPAMALAIFLQMSPEDIKIMGMSNDYARPEWMIITVLPVPPPPVRPSIKVDSGDGPTGE 200
Query: 346 DDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLP-PLASTA 522
DDLT KL +I+ N + + G PA ++ + LQ A +M++D P L +
Sbjct: 201 DDLTYKLGDIIRANGNVRRGETEGTPAHIIEEFETLLQFHVATYMSNDTAGQPQALQKSG 260
Query: 523 KPLRGISQRL 552
+P++ I RL
Sbjct: 261 RPVKAIRARL 270
[223][TOP]
>UniRef100_A2SSM4 DNA-directed RNA polymerase n=1 Tax=Methanocorpusculum labreanum Z
RepID=A2SSM4_METLZ
Length = 889
Score = 76.3 bits (186), Expect = 1e-12
Identities = 51/176 (28%), Positives = 86/176 (48%), Gaps = 6/176 (3%)
Frame = +1
Query: 43 YKKPTK-----TELREQAKSAAMESAYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAM 207
++KPT TE+ E K E K +AD+ L ++ DD
Sbjct: 151 FEKPTSFVEIVTEMGEDGKVHKSER-----KLTSADIRERLEKIPDD------------- 192
Query: 208 TAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMN 387
D+ L+ + RPE +L LPVPP+ +RP++ + S EDDLT KL +I+ +N
Sbjct: 193 ---DLRLLGIDPEVARPEWTVLTVLPVPPVTVRPSIILENGQRS-EDDLTHKLVDIIRIN 248
Query: 388 EALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLA-STAKPLRGISQRL 552
+ ++ + G P +++ D E LQ +++++ PP + +PL+ +SQRL
Sbjct: 249 QRFKENQDAGAPQLIIEDLWELLQYHVTTYLDNEVAGCPPARHRSGRPLKTLSQRL 304
[224][TOP]
>UniRef100_P35074 DNA-directed RNA polymerase II subunit RPB1 n=1 Tax=Caenorhabditis
briggsae RepID=RPB1_CAEBR
Length = 1853
Score = 76.3 bits (186), Expect = 1e-12
Identities = 47/125 (37%), Positives = 68/125 (54%), Gaps = 1/125 (0%)
Frame = +1
Query: 181 RTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTM 360
R L +F+ +T ED+ +I M RPE +I LPVPPL +RP V + SA +DDLT
Sbjct: 214 RVLEVFKQITDEDILVIGMDPQFARPEWMICTVLPVPPLAVRPAVVTFGSA-KNQDDLTH 272
Query: 361 KLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLAST-AKPLRG 537
KL++I+ N+ L ++ G A +L D LQ A +++ LP +PL+
Sbjct: 273 KLSDIIKTNQQLQRNEANGAAAHVLTDDVRLLQYHVATLVDNCIPGLPTATQKGGRPLKS 332
Query: 538 ISQRL 552
I QRL
Sbjct: 333 IKQRL 337
[225][TOP]
>UniRef100_Q4SF83 DNA-directed RNA polymerase (Fragment) n=1 Tax=Tetraodon
nigroviridis RepID=Q4SF83_TETNG
Length = 1745
Score = 75.9 bits (185), Expect = 2e-12
Identities = 48/153 (31%), Positives = 80/153 (52%), Gaps = 8/153 (5%)
Frame = +1
Query: 118 KRNNADLERHLSRVGDD-------LNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILR 276
+R+ +L V +D L+P R +F+ ++ E+ ++ M RPE +I+
Sbjct: 13 RRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEEDMILGMDPKFARPEWMIVT 72
Query: 277 YLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWL 456
LPVPPL +RP V SA +DDLT KL +IV +N L ++ G A ++ + + L
Sbjct: 73 VLPVPPLAVRPAVVMQGSA-RNQDDLTHKLADIVKINNQLRRNEQSGAAAHVIAEDVKLL 131
Query: 457 QVEAARFMNSDATNLP-PLASTAKPLRGISQRL 552
Q A ++++ LP + + +PL+ I QRL
Sbjct: 132 QFHVATMVDNELPGLPRAMQKSGRPLKSIKQRL 164
[226][TOP]
>UniRef100_B7G9I2 DNA-directed RNA polymerase (Fragment) n=1 Tax=Phaeodactylum
tricornutum CCAP 1055/1 RepID=B7G9I2_PHATR
Length = 1706
Score = 75.9 bits (185), Expect = 2e-12
Identities = 39/121 (32%), Positives = 72/121 (59%), Gaps = 1/121 (0%)
Frame = +1
Query: 193 LFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTE 372
+F+ + ED+ L+ + RP+ L+++ LPVPPL +RP+V S+EDDLT +L
Sbjct: 145 IFKQIREEDIVLLGLDVQHARPDWLLVQVLPVPPLHVRPSVTVGGGTQSSEDDLTHQLVN 204
Query: 373 IVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLAS-TAKPLRGISQR 549
++ N +L ++++ G P +++ LQ A FM+++ +P + + +PL+ I+QR
Sbjct: 205 VIKSNLSLQQAVSNGEPQIVVEQFELALQHNVAAFMDNELRGMPQVTQRSGRPLKTITQR 264
Query: 550 L 552
L
Sbjct: 265 L 265
[227][TOP]
>UniRef100_Q7RQQ6 DNA-directed RNA polymerase n=1 Tax=Plasmodium yoelii yoelii
RepID=Q7RQQ6_PLAYO
Length = 2020
Score = 75.9 bits (185), Expect = 2e-12
Identities = 50/133 (37%), Positives = 74/133 (55%), Gaps = 3/133 (2%)
Frame = +1
Query: 163 DDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGST 342
+DLN L L LF+ + + L+++ PE+LI+ L VPP IRP+V D G+
Sbjct: 216 EDLNSLYVLKLFKNINPFYIKLLNIE----NPEKLIITTLIVPPNTIRPSVIIDEH-GTA 270
Query: 343 EDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLAST- 519
EDDLT L+EI +N + + G + E+LQ++ RF+NSD+ + L +T
Sbjct: 271 EDDLTCILSEIAQLNNTINSQSSNGYQTNQFLGNIEFLQLQVTRFINSDSPAVSQLLATQ 330
Query: 520 --AKPLRGISQRL 552
+KP RGI QRL
Sbjct: 331 NISKPGRGICQRL 343
[228][TOP]
>UniRef100_A5H2F1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Tornabea
scutellifera RepID=A5H2F1_9LECA
Length = 993
Score = 75.9 bits (185), Expect = 2e-12
Identities = 44/130 (33%), Positives = 71/130 (54%), Gaps = 2/130 (1%)
Frame = +1
Query: 169 LNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGST-E 345
+ P LA+F+AM+ +D+ + + RPE +I+ LPVPP +RP++ D G T E
Sbjct: 115 ITPKMALAVFQAMSTDDIKKLGLSNDYARPEWMIITVLPVPPPPVRPSIKVDGGDGPTGE 174
Query: 346 DDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLP-PLASTA 522
DDLT KL +I+ N + + G PA ++ + LQ A +M++D P L +
Sbjct: 175 DDLTYKLGDIIRANGNVRRGETEGTPAHIIEEFETLLQFHVATYMSNDTAGQPQALQKSG 234
Query: 523 KPLRGISQRL 552
+P++ I RL
Sbjct: 235 RPVKAIRARL 244
[229][TOP]
>UniRef100_Q9V114 DNA-directed RNA polymerase n=1 Tax=Pyrococcus abyssi
RepID=Q9V114_PYRAB
Length = 907
Score = 75.9 bits (185), Expect = 2e-12
Identities = 38/119 (31%), Positives = 70/119 (58%), Gaps = 1/119 (0%)
Frame = +1
Query: 199 EAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIV 378
E + +D+ L+ + RPE ++L LPVPP+ RP++ + + EDDLT KL +I+
Sbjct: 191 EKIPDKDLPLLGLHPEKSRPEWMVLTVLPVPPVTARPSITLETGIRA-EDDLTHKLVDII 249
Query: 379 HMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLA-STAKPLRGISQRL 552
+N L ++I G P +++ D + LQ ++N++ + +PP + +PL+ ++QRL
Sbjct: 250 RINNRLKQNIEAGAPQLIIEDLWDLLQYHVTTYINNETSGVPPAKHKSGRPLKTLAQRL 308
[230][TOP]
>UniRef100_UPI0000546D90 PREDICTED: im:7136071 isoform 1 n=1 Tax=Danio rerio
RepID=UPI0000546D90
Length = 1972
Score = 75.5 bits (184), Expect = 2e-12
Identities = 48/153 (31%), Positives = 79/153 (51%), Gaps = 8/153 (5%)
Frame = +1
Query: 118 KRNNADLERHLSRVGDD-------LNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILR 276
+R+ +L V +D L+P R +F+ + E+ ++ M RPE +I+
Sbjct: 189 RRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRIADEEDIILGMDPKYARPEWMIVT 248
Query: 277 YLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWL 456
LPVPPL +RP V SA +DDLT KL +IV +N L ++ G A ++ + + L
Sbjct: 249 VLPVPPLAVRPAVVMQGSA-RNQDDLTHKLADIVKINNQLKRNEQSGAAAHVIAEDVKLL 307
Query: 457 QVEAARFMNSDATNLP-PLASTAKPLRGISQRL 552
Q A ++++ LP + + +PL+ I QRL
Sbjct: 308 QFHVATMVDNELPGLPRAMQKSGRPLKSIKQRL 340
[231][TOP]
>UniRef100_UPI0001A2D831 POLR2A protein n=1 Tax=Danio rerio RepID=UPI0001A2D831
Length = 563
Score = 75.5 bits (184), Expect = 2e-12
Identities = 48/153 (31%), Positives = 79/153 (51%), Gaps = 8/153 (5%)
Frame = +1
Query: 118 KRNNADLERHLSRVGDD-------LNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILR 276
+R+ +L V +D L+P R +F+ + E+ ++ M RPE +I+
Sbjct: 189 RRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRIADEEDIILGMDPKYARPEWMIVT 248
Query: 277 YLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWL 456
LPVPPL +RP V SA +DDLT KL +IV +N L ++ G A ++ + + L
Sbjct: 249 VLPVPPLAVRPAVVMQGSA-RNQDDLTHKLADIVKINNQLKRNEQSGAAAHVIAEDVKLL 307
Query: 457 QVEAARFMNSDATNLP-PLASTAKPLRGISQRL 552
Q A ++++ LP + + +PL+ I QRL
Sbjct: 308 QFHVATMVDNELPGLPRAMQKSGRPLKSIKQRL 340
[232][TOP]
>UniRef100_Q9AXN0 DNA-directed RNA polymerase n=1 Tax=Glaucosphaera vacuolata
RepID=Q9AXN0_9RHOD
Length = 1746
Score = 75.5 bits (184), Expect = 2e-12
Identities = 46/125 (36%), Positives = 67/125 (53%), Gaps = 1/125 (0%)
Frame = +1
Query: 181 RTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTM 360
+ L++F+ ++ +D+ ++ + RPE IL PVPP IRP+V D S EDDLT
Sbjct: 192 KVLSIFKHISDDDIEIMGLSPQHSRPEWFILTLFPVPPPHIRPSVMMDASMRG-EDDLTY 250
Query: 361 KLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPL-ASTAKPLRG 537
KL +IV N AL + G PA L + LQ MN+D +P + +P++
Sbjct: 251 KLGDIVRNNNALREMERTGAPAHRLNEQIHVLQAHIITIMNNDLPGMPRAHQKSGRPIKS 310
Query: 538 ISQRL 552
ISQRL
Sbjct: 311 ISQRL 315
[233][TOP]
>UniRef100_Q5CWY0 DNA-directed RNA polymerase n=2 Tax=Cryptosporidium parvum
RepID=Q5CWY0_CRYPV
Length = 1871
Score = 75.5 bits (184), Expect = 2e-12
Identities = 46/133 (34%), Positives = 73/133 (54%), Gaps = 3/133 (2%)
Frame = +1
Query: 163 DDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGST 342
+DL P+ L E + +D+ +++ +P L++ LPVPP CIRP+V S GS
Sbjct: 214 EDLTPIFVQTLLERVPYQDLDILETF----KPGNLLISRLPVPPNCIRPSVTMGES-GSN 268
Query: 343 EDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLAST- 519
EDDLT+ L+EI +N + + G L+ E+LQ++ R +N+DA + L ++
Sbjct: 269 EDDLTVILSEITDLNNIIKSQMKSGFQTFQLLGNWEFLQLQCTRLINADAPGVNQLLASK 328
Query: 520 --AKPLRGISQRL 552
K RG+ QRL
Sbjct: 329 NIPKAGRGVCQRL 341
[234][TOP]
>UniRef100_Q5CK97 DNA-directed RNA polymerase n=1 Tax=Cryptosporidium hominis
RepID=Q5CK97_CRYHO
Length = 1869
Score = 75.5 bits (184), Expect = 2e-12
Identities = 46/133 (34%), Positives = 73/133 (54%), Gaps = 3/133 (2%)
Frame = +1
Query: 163 DDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGST 342
+DL P+ L E + +D+ +++ +P L++ LPVPP CIRP+V S GS
Sbjct: 214 EDLTPIFVQTLLERVPYQDLDILETF----KPGNLLISRLPVPPNCIRPSVTMGES-GSN 268
Query: 343 EDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLAST- 519
EDDLT+ L+EI +N + + G L+ E+LQ++ R +N+DA + L ++
Sbjct: 269 EDDLTVILSEITDLNNIIKSQMKSGFQTFQLLGNWEFLQLQCTRLINADAPGVNQLLASK 328
Query: 520 --AKPLRGISQRL 552
K RG+ QRL
Sbjct: 329 NIPKAGRGVCQRL 341
[235][TOP]
>UniRef100_B3RM26 DNA-directed RNA polymerase n=1 Tax=Trichoplax adhaerens
RepID=B3RM26_TRIAD
Length = 1784
Score = 75.5 bits (184), Expect = 2e-12
Identities = 46/153 (30%), Positives = 79/153 (51%), Gaps = 8/153 (5%)
Frame = +1
Query: 118 KRNNADLERHLSRVGDD-------LNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILR 276
+RN +L ++ +D L R +F+ ++ ED ++ M RP+ +I+
Sbjct: 180 RRNGLELTAEWKKINEDSQERKINLTAERVYEIFKRISDEDSEVLGMDPRFARPDWMIIT 239
Query: 277 YLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWL 456
LPVPPL +RP+V SA S +DDLT KL +I+ N L ++ + G PA ++ + L
Sbjct: 240 CLPVPPLHVRPSVVMHGSARS-QDDLTHKLADIIKANNNLQRNESCGAPAHVITEDTRML 298
Query: 457 QVEAARFMNSDATNLP-PLASTAKPLRGISQRL 552
Q +++ +P + + +PL+ I QRL
Sbjct: 299 QFHVTTLTDNEVPGMPKAMQKSGRPLKSIKQRL 331
[236][TOP]
>UniRef100_Q2PYS3 DNA-directed RNA polymerase (Fragment) n=1 Tax=Cladochytrium
replicatum RepID=Q2PYS3_9FUNG
Length = 981
Score = 75.5 bits (184), Expect = 2e-12
Identities = 45/125 (36%), Positives = 69/125 (55%), Gaps = 1/125 (0%)
Frame = +1
Query: 181 RTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTM 360
+ LALFE+++ D + + RPE +I++ L VPPL +RP+V D G +EDDLT
Sbjct: 112 KVLALFESISESDQEAMGLSPEWARPEWMIIQVLLVPPLSVRPSVHMD-GMGRSEDDLTH 170
Query: 361 KLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLA-STAKPLRG 537
KL +I+ N L K G P L+ D LQ A +MN++ + +P + +P++
Sbjct: 171 KLMDIIKANNNLRKHEADGSPPHLVTDLESILQYHVATYMNNELSGVPTATQKSGRPIKS 230
Query: 538 ISQRL 552
I RL
Sbjct: 231 IRDRL 235
[237][TOP]
>UniRef100_Q1W1U5 DNA-directed RNA polymerase (Fragment) n=1 Tax=Fistulina antarctica
RepID=Q1W1U5_9APHY
Length = 411
Score = 75.5 bits (184), Expect = 2e-12
Identities = 39/129 (30%), Positives = 72/129 (55%), Gaps = 1/129 (0%)
Frame = +1
Query: 169 LNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTED 348
L+P A+F+ ++ +D++++ + RPE +IL LPVPP +RP++ D +ED
Sbjct: 129 LSPSEVYAIFKKISDDDLSMLGLSEEYARPEWMILTVLPVPPPPVRPSIAVDGGVMRSED 188
Query: 349 DLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLP-PLASTAK 525
DLT KL +I+ + + + G P ++ + + LQ A +M++D +P L + +
Sbjct: 189 DLTYKLGDIIKASANVRRCEQEGAPGHIITEFEQLLQFHVATYMDNDIAGIPQALQKSGR 248
Query: 526 PLRGISQRL 552
P++ I RL
Sbjct: 249 PVKAIRARL 257
[238][TOP]
>UniRef100_A1YIB1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Phragmidium sp. MB
RepID=A1YIB1_9BASI
Length = 1013
Score = 75.5 bits (184), Expect = 2e-12
Identities = 39/114 (34%), Positives = 64/114 (56%), Gaps = 1/114 (0%)
Frame = +1
Query: 214 EDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEA 393
ED+ ++ + RPE ++L LP+PP +RP++ D A EDDLT KL E++ N+A
Sbjct: 153 EDLRIMGLHTEEARPEWMVLTALPIPPPPVRPSIAMDGGATRGEDDLTYKLAEVIKTNKA 212
Query: 394 LAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLP-PLASTAKPLRGISQRL 552
L + I G PA ++ + LQ A +M++D P + + +P++ I RL
Sbjct: 213 LGEHILAGSPAHIITEFETLLQWHIATYMDNDLPGQPQAMQKSGRPIKSIRARL 266
[239][TOP]
>UniRef100_Q1W1V4 DNA-directed RNA polymerase (Fragment) n=1 Tax=Clavulinopsis
laeticolor RepID=Q1W1V4_CLALA
Length = 413
Score = 75.1 bits (183), Expect = 3e-12
Identities = 48/152 (31%), Positives = 76/152 (50%), Gaps = 3/152 (1%)
Frame = +1
Query: 106 YGDAKRNNADLERHLSRVGDD--LNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRY 279
Y KR D E S + D P LF+ +T D+ L+ + RPE IL
Sbjct: 110 YVQYKRPKDDDEEVKSALADKRLFTPADIYVLFKKITDTDLDLLGLSGEYARPEWXILTI 169
Query: 280 LPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQ 459
LPVPP +RP++ D +EDDLT KL +I+ + + + G PA ++M+ + LQ
Sbjct: 170 LPVPPPPVRPSIAVDGGVMRSEDDLTYKLGDIIKASANVRRCEQEGAPAHVIMEFEQLLQ 229
Query: 460 VEAARFMNSDATNLP-PLASTAKPLRGISQRL 552
A +M+++ +P L + +P++ I RL
Sbjct: 230 FHVATYMDNNIAGIPQALQKSGRPVKAIRARL 261
[240][TOP]
>UniRef100_A9CTM9 DNA-directed RNA polymerase n=1 Tax=Enterocytozoon bieneusi H348
RepID=A9CTM9_ENTBH
Length = 1174
Score = 75.1 bits (183), Expect = 3e-12
Identities = 40/113 (35%), Positives = 67/113 (59%)
Frame = +1
Query: 163 DDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGST 342
D+LNPL LF+ + D+ + + P L+++ L VPP CIRP+V D G
Sbjct: 170 DELNPLTVYNLFKNIKETDLLFLSCK----NPCNLLIKTLLVPPCCIRPSVDMDQD-GFN 224
Query: 343 EDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNL 501
EDDLT+KL+EI++ N + ++I G + L + ++LQ++ A ++NSD ++
Sbjct: 225 EDDLTVKLSEIINCNNLIEENIKKGASLITLNEDWDYLQLQIALYINSDLPSI 277
[241][TOP]
>UniRef100_A7J591 DNA-directed RNA polymerase (Fragment) n=1 Tax=Anaptychia palmatula
RepID=A7J591_9LECA
Length = 1020
Score = 75.1 bits (183), Expect = 3e-12
Identities = 45/130 (34%), Positives = 69/130 (53%), Gaps = 2/130 (1%)
Frame = +1
Query: 169 LNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGST-E 345
+ P LA+F M+ ED+ + M RPE +I+ LPVPP +RP++ D G T E
Sbjct: 140 ITPAMALAIFLQMSPEDIKTMGMSNDYARPEWMIITVLPVPPPPVRPSIKVDSGDGPTGE 199
Query: 346 DDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLP-PLASTA 522
DDLT KL +I+ N + + G PA ++ + LQ A +M++D P L +
Sbjct: 200 DDLTYKLGDIIRANGNVRRGETEGTPAHIIEEFETLLQFHVATYMSNDTAGQPQALQKSG 259
Query: 523 KPLRGISQRL 552
+P++ I RL
Sbjct: 260 RPVKAIRARL 269
[242][TOP]
>UniRef100_A1YIB2 DNA-directed RNA polymerase (Fragment) n=2 Tax=Smittium culisetae
RepID=A1YIB2_SMICU
Length = 1025
Score = 75.1 bits (183), Expect = 3e-12
Identities = 44/129 (34%), Positives = 70/129 (54%), Gaps = 1/129 (0%)
Frame = +1
Query: 169 LNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTED 348
L L+ L + + ++ DV I M RPE LI+ +PVPP+C+RP++ D + S ED
Sbjct: 142 LTVLQVLQVLKKISDTDVRAIGMNPEYARPEWLIISVMPVPPMCVRPSIQMDATRHS-ED 200
Query: 349 DLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLP-PLASTAK 525
DLT KL +I+ N + G P ++ + LQ A F+N+D + +P L + +
Sbjct: 201 DLTYKLNDILKANARVRSCEVEGAPQHIIDEFETLLQFHVATFINNDISGIPQALQKSGR 260
Query: 526 PLRGISQRL 552
P++ I RL
Sbjct: 261 PIKSIRARL 269
[243][TOP]
>UniRef100_A1RWW5 DNA-directed RNA polymerase n=1 Tax=Thermofilum pendens Hrk 5
RepID=A1RWW5_THEPD
Length = 888
Score = 75.1 bits (183), Expect = 3e-12
Identities = 40/129 (31%), Positives = 73/129 (56%), Gaps = 1/129 (0%)
Frame = +1
Query: 169 LNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTED 348
L PL + D+ ++ + RPE ++LR +PV P +RP++ + S +ED
Sbjct: 179 LTPLEIWERLSRIPEGDLRVVGIDPKEARPEWMVLRVIPVVPPSVRPSITLE-SGDRSED 237
Query: 349 DLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLA-STAK 525
DLT KL +I+ +N+ L ++I+ G P++++ D LQ A + +++ +PP + +
Sbjct: 238 DLTHKLVDIIRVNQRLKENIDAGSPSLVIEDLWNLLQFHVATYFDNELPGIPPARHRSGR 297
Query: 526 PLRGISQRL 552
PLR ++QRL
Sbjct: 298 PLRTLAQRL 306
[244][TOP]
>UniRef100_B3T7L4 DNA-directed RNA polymerase n=1 Tax=uncultured marine crenarchaeote
HF4000_APKG3E18 RepID=B3T7L4_9ARCH
Length = 1273
Score = 75.1 bits (183), Expect = 3e-12
Identities = 41/136 (30%), Positives = 80/136 (58%), Gaps = 2/136 (1%)
Frame = +1
Query: 151 SRVGDD-LNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDP 327
+++G++ L P+ F +T +D+ L++ RPE IL+ LPVPP+ +RP++ +
Sbjct: 176 TKLGENRLLPITIRERFSQITDDDLRLLNYNVDTARPEWFILQALPVPPVTVRPSIILE- 234
Query: 328 SAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPP 507
S +EDDLT K+ +I+ +N+ L +S G P +++ D + LQ + +++ + +P
Sbjct: 235 SGIRSEDDLTHKMVDIIRVNQRLKESKEAGTPPLIVQDLVDLLQYHCTTYFDNEVSGIPQ 294
Query: 508 L-ASTAKPLRGISQRL 552
+ +PL+ ++QRL
Sbjct: 295 AHHRSGRPLKTLTQRL 310
[245][TOP]
>UniRef100_B3T303 DNA-directed RNA polymerase n=1 Tax=uncultured marine crenarchaeote
HF4000_ANIW93I24 RepID=B3T303_9ARCH
Length = 1264
Score = 75.1 bits (183), Expect = 3e-12
Identities = 40/129 (31%), Positives = 74/129 (57%), Gaps = 1/129 (0%)
Frame = +1
Query: 169 LNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTED 348
L P+ F +T +D+ L++ RPE IL+ LPVPP+ +RP++ + S +ED
Sbjct: 178 LLPITIRERFLQITDDDLELVNYNTATARPEWFILQALPVPPVTVRPSIILE-SGIRSED 236
Query: 349 DLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPL-ASTAK 525
DLT K+ +I+ +N+ L +S G P +++ D + LQ + +++ + +P + +
Sbjct: 237 DLTHKMVDIIRVNQRLKESKEAGTPPLIVQDLVDLLQYHCTTYFDNEVSGIPQAHHRSGR 296
Query: 526 PLRGISQRL 552
PL+ ++QRL
Sbjct: 297 PLKTLTQRL 305
[246][TOP]
>UniRef100_UPI0001796DD3 PREDICTED: similar to DNA-directed RNA polymerase II subunit RPB1
(RNA polymerase II subunit B1) (DNA-directed RNA
polymerase II subunit A) (DNA-directed RNA polymerase
III largest subunit) n=1 Tax=Equus caballus
RepID=UPI0001796DD3
Length = 1834
Score = 74.7 bits (182), Expect = 4e-12
Identities = 47/153 (30%), Positives = 80/153 (52%), Gaps = 8/153 (5%)
Frame = +1
Query: 118 KRNNADLERHLSRVGDD-------LNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILR 276
+R+ +L V +D L+P R +F+ ++ E+ ++ M RPE +I+
Sbjct: 192 RRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEECFVLGMEPRYARPEWMIVT 251
Query: 277 YLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWL 456
LPVPPL +RP V SA +DDLT KL +IV +N L ++ G A ++ + + L
Sbjct: 252 VLPVPPLSVRPAVVMQGSA-RNQDDLTHKLADIVKINNQLRRNEQNGAAAHVIAEDVKLL 310
Query: 457 QVEAARFMNSDATNLP-PLASTAKPLRGISQRL 552
Q A ++++ LP + + +PL+ + QRL
Sbjct: 311 QFHVATMVDNELPGLPRAMQKSGRPLKSLKQRL 343
[247][TOP]
>UniRef100_UPI0000EBDCD2 PREDICTED: polymerase (RNA) II (DNA directed) polypeptide A, 220kDa
isoform 4 n=1 Tax=Bos taurus RepID=UPI0000EBDCD2
Length = 1970
Score = 74.7 bits (182), Expect = 4e-12
Identities = 47/153 (30%), Positives = 80/153 (52%), Gaps = 8/153 (5%)
Frame = +1
Query: 118 KRNNADLERHLSRVGDD-------LNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILR 276
+R+ +L V +D L+P R +F+ ++ E+ ++ M RPE +I+
Sbjct: 192 RRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEECFVLGMEPRYARPEWMIVT 251
Query: 277 YLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWL 456
LPVPPL +RP V SA +DDLT KL +IV +N L ++ G A ++ + + L
Sbjct: 252 VLPVPPLSVRPAVVMQGSA-RNQDDLTHKLADIVKINNQLRRNEQNGAAAHVIAEDVKLL 310
Query: 457 QVEAARFMNSDATNLP-PLASTAKPLRGISQRL 552
Q A ++++ LP + + +PL+ + QRL
Sbjct: 311 QFHVATMVDNELPGLPRAMQKSGRPLKSLKQRL 343
[248][TOP]
>UniRef100_UPI0000E24648 PREDICTED: similar to DNA-directed RNA polymerase II largest
subunit (RPB1) n=1 Tax=Pan troglodytes
RepID=UPI0000E24648
Length = 1913
Score = 74.7 bits (182), Expect = 4e-12
Identities = 47/153 (30%), Positives = 80/153 (52%), Gaps = 8/153 (5%)
Frame = +1
Query: 118 KRNNADLERHLSRVGDD-------LNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILR 276
+R+ +L V +D L+P R +F+ ++ E+ ++ M RPE +I+
Sbjct: 192 RRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEECFVLGMEPRYARPEWMIVT 251
Query: 277 YLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWL 456
LPVPPL +RP V SA +DDLT KL +IV +N L ++ G A ++ + + L
Sbjct: 252 VLPVPPLSVRPAVVMQGSA-RNQDDLTHKLADIVKINNQLRRNEQNGAAAHVIAEDVKLL 310
Query: 457 QVEAARFMNSDATNLP-PLASTAKPLRGISQRL 552
Q A ++++ LP + + +PL+ + QRL
Sbjct: 311 QFHVATMVDNELPGLPRAMQKSGRPLKSLKQRL 343
[249][TOP]
>UniRef100_UPI0000D9E16B PREDICTED: similar to DNA-directed RNA polymerase II largest
subunit (RPB1) n=1 Tax=Macaca mulatta
RepID=UPI0000D9E16B
Length = 1193
Score = 74.7 bits (182), Expect = 4e-12
Identities = 47/153 (30%), Positives = 80/153 (52%), Gaps = 8/153 (5%)
Frame = +1
Query: 118 KRNNADLERHLSRVGDD-------LNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILR 276
+R+ +L V +D L+P R +F+ ++ E+ ++ M RPE +I+
Sbjct: 192 RRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEECFVLGMEPRYARPEWMIVT 251
Query: 277 YLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWL 456
LPVPPL +RP V SA +DDLT KL +IV +N L ++ G A ++ + + L
Sbjct: 252 VLPVPPLSVRPAVVMQGSA-RNQDDLTHKLADIVKINNQLRRNEQNGAAAHVIAEDVKLL 310
Query: 457 QVEAARFMNSDATNLP-PLASTAKPLRGISQRL 552
Q A ++++ LP + + +PL+ + QRL
Sbjct: 311 QFHVATMVDNELPGLPRAMQKSGRPLKSLKQRL 343
[250][TOP]
>UniRef100_UPI00005A0B2C PREDICTED: similar to DNA-directed RNA polymerase II largest
subunit (RPB1) isoform 23 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B2C
Length = 1888
Score = 74.7 bits (182), Expect = 4e-12
Identities = 47/153 (30%), Positives = 80/153 (52%), Gaps = 8/153 (5%)
Frame = +1
Query: 118 KRNNADLERHLSRVGDD-------LNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILR 276
+R+ +L V +D L+P R +F+ ++ E+ ++ M RPE +I+
Sbjct: 192 RRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEECFVLGMEPRYARPEWMIVT 251
Query: 277 YLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWL 456
LPVPPL +RP V SA +DDLT KL +IV +N L ++ G A ++ + + L
Sbjct: 252 VLPVPPLSVRPAVVMQGSA-RNQDDLTHKLADIVKINNQLRRNEQNGAAAHVIAEDVKLL 310
Query: 457 QVEAARFMNSDATNLP-PLASTAKPLRGISQRL 552
Q A ++++ LP + + +PL+ + QRL
Sbjct: 311 QFHVATMVDNELPGLPRAMQKSGRPLKSLKQRL 343