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[1][TOP]
>UniRef100_O04142 DNA-directed RNA polymerase (Fragment) n=1 Tax=Porphyra yezoensis
RepID=O04142_PORYE
Length = 1685
Score = 351 bits (901), Expect = 2e-95
Identities = 172/175 (98%), Positives = 172/175 (98%)
Frame = +2
Query: 2 INATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGG 181
INATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGL GG
Sbjct: 1511 INATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLCGG 1570
Query: 182 PAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSPGYSPTSPSVGARGGPAAGYA 361
PAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSPGYSPTSPSVGARGGPAAGYA
Sbjct: 1571 PAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSPGYSPTSPSVGARGGPAAGYA 1630
Query: 362 SPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPSRR 526
SPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSP SPNYAAASSPAYQPP RR
Sbjct: 1631 SPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPSSPNYAAASSPAYQPPPRR 1685
[2][TOP]
>UniRef100_A9U396 DNA-directed RNA polymerase n=1 Tax=Physcomitrella patens subsp.
patens RepID=A9U396_PHYPA
Length = 1742
Score = 115 bits (288), Expect = 2e-24
Identities = 73/175 (41%), Positives = 98/175 (56%), Gaps = 9/175 (5%)
Frame = +2
Query: 23 SPIMSSADAAGRATPGRMTP--GRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGA 196
S ++S + A + + +P G P +P SP+SPGY+ +SP + G
Sbjct: 1510 SYLLSPSLRASPLSDAQFSPYVGNMPFSPSSPGYSPSSPGYSPLSPGYSPTSPGYSPTSP 1569
Query: 197 GAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARG---GPAAGY 358
G Y+P SP Y TSPG YSP++P+ + +SPGYSP YSPTSPS P +
Sbjct: 1570 G-YSPTSPGYSPTSPG--YSPTSPSYSPTSPGYSPTSPSYSPTSPSYAPTSPSYSPTSPS 1626
Query: 359 ASPQSPGYVPTSPAYARPGTVVAAANV-YSPSSPAYSPFSPNYAAASSPAYQPPS 520
SP SP Y PTSP+Y+ + + YSP+SPAYSP SP+Y A +SPAY P S
Sbjct: 1627 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPSY-APTSPAYSPTS 1680
Score = 110 bits (275), Expect = 6e-23
Identities = 71/162 (43%), Positives = 92/162 (56%), Gaps = 12/162 (7%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+PG SP +P SP SPGY+ SP + + + +YAP SP+Y TSP YS
Sbjct: 1582 SPGYSPT---SPSYSPTSPGYSPTSPSY--------SPTSPSYAPTSPSYSPTSPS--YS 1628
Query: 257 PSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYA------- 406
P++P+ + +SP YSP YSPTSPS P + SP SP Y PTSPAY+
Sbjct: 1629 PTSPSYSPTSPSYSPTSPSYSPTSPSYS----PTSPAYSPTSPSYAPTSPAYSPTSPSYS 1684
Query: 407 --RPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPSRR 526
PG + + YSPSSP+YSP SP+Y + +SPAY P S R
Sbjct: 1685 PTSPGYSPTSPS-YSPSSPSYSPTSPSY-SPTSPAYSPTSPR 1724
Score = 99.8 bits (247), Expect = 1e-19
Identities = 61/139 (43%), Positives = 80/139 (57%), Gaps = 3/139 (2%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP +P SP SP Y+ SP + + + +Y+P SPAY TSP Y+
Sbjct: 1624 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPAYSPTSPS--YA 1670
Query: 257 PSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVA 427
P++PA + +SP YSP GYSPTSPS P++ SP SP Y PTSPAY+
Sbjct: 1671 PTSPAYSPTSPSYSPTSPGYSPTSPSYS----PSSPSYSPTSPSYSPTSPAYS------P 1720
Query: 428 AANVYSPSSPAYSPFSPNY 484
+ YSPSSP+YSP SP+Y
Sbjct: 1721 TSPRYSPSSPSYSPTSPSY 1739
[3][TOP]
>UniRef100_A7S8F9 DNA-directed RNA polymerase n=1 Tax=Nematostella vectensis
RepID=A7S8F9_NEMVE
Length = 1929
Score = 114 bits (286), Expect = 3e-24
Identities = 75/185 (40%), Positives = 103/185 (55%), Gaps = 16/185 (8%)
Frame = +2
Query: 14 ASFSPIMSSADAAGRATPG------RMTPGR----SPAGRFTPRMSPASPGYAAMSPRFG 163
ASFSP +S DA+G + G TPG P + P + ASPGY+ SP F
Sbjct: 1542 ASFSPSAAS-DASGMSPGGFSPSWMSPTPGSPVSPGPTSPYIPSPAAASPGYSPSSPAF- 1599
Query: 164 GGLGGGPA--GGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPSV 328
+ P+ + +Y+P SP Y +SP GYSP++P+ + +SP Y SP YSPTSPS
Sbjct: 1600 --MPSSPSMSPASPSYSPTSPGYSPSSPSSGYSPASPSYSPTSPSYSPTSPSYSPTSPSY 1657
Query: 329 GARGGPAAGYASPQSPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPA 505
P + SP SP Y PTSP+Y+ + + YSP+SP+YSP SP+Y + +SP+
Sbjct: 1658 ----SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPS 1712
Query: 506 YQPPS 520
Y P S
Sbjct: 1713 YSPTS 1717
Score = 108 bits (270), Expect = 2e-22
Identities = 71/196 (36%), Positives = 98/196 (50%), Gaps = 30/196 (15%)
Frame = +2
Query: 23 SPIMSSADAAGRATPGRMTPGRSPAGRF----TPRMSPASPGYAAMSPRFGGGLGGGPAG 190
SP+ + +P +PG SP+ +P MSPASP Y+ SP G P+
Sbjct: 1571 SPVSPGPTSPYIPSPAAASPGYSPSSPAFMPSSPSMSPASPSYSPTSP------GYSPSS 1624
Query: 191 GAGAYAPASPAYMATSPGMG-------------------YSPSTPALAVSSPGYSP---G 304
+ Y+PASP+Y TSP YSP++P+ + +SP YSP
Sbjct: 1625 PSSGYSPASPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1684
Query: 305 YSPTSPSVGARG---GPAAGYASPQSPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPF 472
YSPTSPS P + SP SP Y PTSP+Y+ + + YSP+SP+YSP
Sbjct: 1685 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1744
Query: 473 SPNYAAASSPAYQPPS 520
SP+Y + +SP+Y P S
Sbjct: 1745 SPSY-SPTSPSYSPTS 1759
Score = 106 bits (264), Expect = 1e-21
Identities = 73/194 (37%), Positives = 97/194 (50%), Gaps = 28/194 (14%)
Frame = +2
Query: 23 SPIMSSADAAGRAT-----PGRMTPGRSPAGRF----TPRMSPASPGYAAMSPRFGGGLG 175
SP MS A + T P + G SPA +P SP SP Y+ SP +
Sbjct: 1603 SPSMSPASPSYSPTSPGYSPSSPSSGYSPASPSYSPTSPSYSPTSPSYSPTSPSYSP-TS 1661
Query: 176 GGPAGGAGAYAPASPAYMATSPGMG-----YSPSTPALAVSSPGYSP---GYSPTSPSVG 331
+ + +Y+P SP+Y TSP YSP++P+ + +SP YSP YSPTSPS
Sbjct: 1662 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1721
Query: 332 ARG----------GPAAGYASPQSPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSP 478
P + SP SP Y PTSP+Y+ + ++ YSPSSP+YSP SP
Sbjct: 1722 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYSPSSPSYSPQSP 1781
Query: 479 NYAAASSPAYQPPS 520
+YA+ SSP Y P S
Sbjct: 1782 SYASPSSPKYSPAS 1795
Score = 102 bits (255), Expect = 1e-20
Identities = 68/179 (37%), Positives = 98/179 (54%), Gaps = 6/179 (3%)
Frame = +2
Query: 2 INATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASP--GYAAMSPRFGGGLG 175
I + A+ SP S + A + M+P +P SP+SP GY+ SP +
Sbjct: 1582 IPSPAAASPGYSPSSPAFMPSSPSMSPASPSYSPTSPGYSPSSPSSGYSPASPSY----- 1636
Query: 176 GGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPSVGARGGP 346
+ + +Y+P SP+Y TSP YSP++P+ + +SP Y SP YSPTSPS P
Sbjct: 1637 ---SPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSYSPTSPSYSPTSPSY----SP 1687
Query: 347 AAGYASPQSPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
+ SP SP Y PTSP+Y+ + + YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1688 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 1745
Score = 102 bits (253), Expect = 2e-20
Identities = 63/152 (41%), Positives = 86/152 (56%), Gaps = 4/152 (2%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP +P SP+SP Y+ SP + + + Y+PASP+Y TSP YS
Sbjct: 1752 SPSYSPT---SPSYSPSSPSYSPSSPSYSPQSPSYASPSSPKYSPASPSYSPTSP--KYS 1806
Query: 257 PSTPALAVSSPGYSPG---YSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPG-TVV 424
P++P + +SP YSP YSPTSPS PA+ SP SP Y P+SP+Y+
Sbjct: 1807 PTSPNYSPASPSYSPSSPKYSPTSPSY----TPASPSYSPASPSYSPSSPSYSPSSPRYT 1862
Query: 425 AAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
+ YSP+SP YSP SPNY + ++P+Y P S
Sbjct: 1863 PTSPQYSPTSPKYSPASPNY-SPTTPSYTPMS 1893
Score = 100 bits (250), Expect = 5e-20
Identities = 64/159 (40%), Positives = 87/159 (54%), Gaps = 11/159 (6%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP +P SP SP Y+ SP + + + +Y+P SP+Y TSP YS
Sbjct: 1703 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 1749
Query: 257 PSTPALAVSSPGYSPG---YSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVA 427
P++P+ + +SP YSP YSP+SPS + + YASP SP Y P SP+Y+ +
Sbjct: 1750 PTSPSYSPTSPSYSPSSPSYSPSSPSYSPQ---SPSYASPSSPKYSPASPSYSPTSPKYS 1806
Query: 428 --------AANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
A+ YSPSSP YSP SP+Y A SP+Y P S
Sbjct: 1807 PTSPNYSPASPSYSPSSPKYSPTSPSYTPA-SPSYSPAS 1844
Score = 93.6 bits (231), Expect = 8e-18
Identities = 72/195 (36%), Positives = 99/195 (50%), Gaps = 37/195 (18%)
Frame = +2
Query: 47 AAGRATPGRMTPGRSPAGRFTPRMSPASPGYA-AMSPRFGGGLGGGPAGGAGAYAPA--- 214
AAG +P M+P + TP A+P Y A SP G+G G GA +++P+
Sbjct: 1503 AAG--SPSAMSP------QMTPWNMGATPAYMEAWSP----GMGSGMTPGAASFSPSAAS 1550
Query: 215 ----------SPAYMATSPGM-------------------GYSPSTPALAVSSPGY---S 298
SP++M+ +PG GYSPS+PA SSP S
Sbjct: 1551 DASGMSPGGFSPSWMSPTPGSPVSPGPTSPYIPSPAAASPGYSPSSPAFMPSSPSMSPAS 1610
Query: 299 PGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFS 475
P YSPTSP + P++GY SP SP Y PTSP+Y+ + + YSP+SP+YSP S
Sbjct: 1611 PSYSPTSPGY-SPSSPSSGY-SPASPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1668
Query: 476 PNYAAASSPAYQPPS 520
P+Y + +SP+Y P S
Sbjct: 1669 PSY-SPTSPSYSPTS 1682
Score = 69.7 bits (169), Expect = 1e-10
Identities = 48/130 (36%), Positives = 61/130 (46%), Gaps = 3/130 (2%)
Frame = +2
Query: 23 SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
SP S A + T + +P +P SP+SP Y+ SP +
Sbjct: 1788 SPKYSPASPSYSPTSPKYSPTSPNYSPASPSYSPSSPKYSPTSP---------------S 1832
Query: 203 YAPASPAYMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYASPQS 373
Y PASP+Y SP YSPS+P+ + SSP Y SP YSPTSP SP S
Sbjct: 1833 YTPASPSYSPASP--SYSPSSPSYSPSSPRYTPTSPQYSPTSPKY-----------SPAS 1879
Query: 374 PGYVPTSPAY 403
P Y PT+P+Y
Sbjct: 1880 PNYSPTTPSY 1889
Score = 58.5 bits (140), Expect = 3e-07
Identities = 41/126 (32%), Positives = 58/126 (46%), Gaps = 14/126 (11%)
Frame = +2
Query: 8 ATASFSPIMSSADAAGRATPGRMTPGRSPAGR----FTPRMSPASPGYAAMSPRFGGGLG 175
++ S+SP S + +P SP +P SPASP Y+ SP++
Sbjct: 1772 SSPSYSPQSPSYASPSSPKYSPASPSYSPTSPKYSPTSPNYSPASPSYSPSSPKYSP-TS 1830
Query: 176 GGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP----------GYSPTSPS 325
+ +Y+PASP+Y +SP YSPS+P +SP YSP YSPT+PS
Sbjct: 1831 PSYTPASPSYSPASPSYSPSSPS--YSPSSPRYTPTSPQYSPTSPKYSPASPNYSPTTPS 1888
Query: 326 VGARGG 343
G
Sbjct: 1889 YTPMSG 1894
[4][TOP]
>UniRef100_UPI00019270E9 PREDICTED: similar to DNA-directed RNA polymerase II subunit RPB1
isoform 2 n=1 Tax=Hydra magnipapillata
RepID=UPI00019270E9
Length = 2014
Score = 114 bits (285), Expect = 4e-24
Identities = 76/185 (41%), Positives = 100/185 (54%), Gaps = 16/185 (8%)
Frame = +2
Query: 14 ASFSPIMSSADAAGRATPGRMTPGRSPAGRF-------------TPRMSPASPGYAAMSP 154
ASFSP S DA+G + G +P SP +P MSP+SPGY+ SP
Sbjct: 1541 ASFSPSAHS-DASGFSPAGGFSPAWSPQDSIPSYSPNSPAFNPQSPAMSPSSPGYSPTSP 1599
Query: 155 RFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPS 325
+ G Y+P SP+Y TSPG YSP++P+ + +SP YSP YSPTSPS
Sbjct: 1600 LYSPTSPG--------YSPTSPSYSPTSPG--YSPTSPSYSPTSPSYSPTSPSYSPTSPS 1649
Query: 326 VGARGGPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPA 505
P + SP SP Y PTSP+Y+ + YSP+SP+YSP SP+Y + +SP+
Sbjct: 1650 Y----SPTSPSYSPTSPSYSPTSPSYS------PTSPSYSPTSPSYSPTSPSY-SPTSPS 1698
Query: 506 YQPPS 520
Y P S
Sbjct: 1699 YSPTS 1703
Score = 104 bits (260), Expect = 3e-21
Identities = 65/152 (42%), Positives = 86/152 (56%), Gaps = 4/152 (2%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP+ +P+ SP SP Y+ SP + + + Y+P SP Y TSP YS
Sbjct: 1745 SPSYSPS---SPQYSPTSPAYSPQSPSYSPS-SPSYSPTSPKYSPTSPKYSPTSPK--YS 1798
Query: 257 PSTPALAVSSPGYSPG---YSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVA 427
P++P+ + SSP YSP YSPTSP+ P + SP SP Y PTSPAY+ +
Sbjct: 1799 PTSPSYSPSSPSYSPSSPNYSPTSPTYS----PTSPTYSPTSPAYSPTSPAYSPTSPAYS 1854
Query: 428 AAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
+ VYSP+SPAYSP SP Y + +SP Y P S
Sbjct: 1855 PTSPVYSPTSPAYSPTSPKY-SPTSPKYSPTS 1885
Score = 103 bits (258), Expect = 6e-21
Identities = 69/179 (38%), Positives = 88/179 (49%), Gaps = 13/179 (7%)
Frame = +2
Query: 23 SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
SPI S + T +P +P+ SP SP Y+ SP + + +
Sbjct: 1703 SPIYSPTSPSYSPTSPSYSPTSPSYSPTSPKYSPTSPSYSPTSPSY--------SPSSPQ 1754
Query: 203 YAPASPAYMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPSVGARG---GPAAGYAS 364
Y+P SPAY SP YSPS+P+ + +SP Y SP YSPTSP P++ S
Sbjct: 1755 YSPTSPAYSPQSP--SYSPSSPSYSPTSPKYSPTSPKYSPTSPKYSPTSPSYSPSSPSYS 1812
Query: 365 PQSPGYVPTSPAYARPG-TVVAAANVYSPSSPAYSPFSPNYAAAS------SPAYQPPS 520
P SP Y PTSP Y+ T + YSP+SPAYSP SP Y+ S SPAY P S
Sbjct: 1813 PSSPNYSPTSPTYSPTSPTYSPTSPAYSPTSPAYSPTSPAYSPTSPVYSPTSPAYSPTS 1871
Score = 100 bits (248), Expect = 8e-20
Identities = 63/155 (40%), Positives = 87/155 (56%), Gaps = 7/155 (4%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP +P SP SP Y+ SP + + + +Y+P SP+Y TSP YS
Sbjct: 1682 SPSYSPT---SPSYSPTSPSYSPTSPIYSP-TSPSYSPTSPSYSPTSPSYSPTSPK--YS 1735
Query: 257 PSTPALAVSSPGYSPG---YSPTSPSVGARG---GPAAGYASPQSPGYVPTSPAYARPGT 418
P++P+ + +SP YSP YSPTSP+ + P++ SP SP Y PTSP Y+
Sbjct: 1736 PTSPSYSPTSPSYSPSSPQYSPTSPAYSPQSPSYSPSSPSYSPTSPKYSPTSPKYSPTSP 1795
Query: 419 VVAAANV-YSPSSPAYSPFSPNYAAASSPAYQPPS 520
+ + YSPSSP+YSP SPNY + +SP Y P S
Sbjct: 1796 KYSPTSPSYSPSSPSYSPSSPNY-SPTSPTYSPTS 1829
Score = 93.6 bits (231), Expect = 8e-18
Identities = 63/159 (39%), Positives = 79/159 (49%), Gaps = 10/159 (6%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP +P SP SP Y+ SP + + + AY+P SP Y TSP YS
Sbjct: 1836 SPAYSPT---SPAYSPTSPAYSPTSPVY--------SPTSPAYSPTSPKYSPTSPK--YS 1882
Query: 257 PSTPALAVSSPGYSP---GYSPTSPSVGARG---GPAAGYASPQSPGYVPTSPAYARPGT 418
P++P + +SP YSP GYSPTSP P SP SP Y P SP Y+ P T
Sbjct: 1883 PTSPIYSPTSPAYSPTSTGYSPTSPEYSPSSPKYSPTTPQYSPTSPKYSPASPTYS-PST 1941
Query: 419 V----VAAANVYSPSSPAYSPFSPNYAAASSPAYQPPSR 523
V + N YSP P YSP +P Y+ +P Y P R
Sbjct: 1942 PTDKSVGSIN-YSPLEPDYSPGTPTYSPDGTPTYSPDGR 1979
Score = 69.3 bits (168), Expect = 2e-10
Identities = 56/164 (34%), Positives = 77/164 (46%), Gaps = 18/164 (10%)
Frame = +2
Query: 23 SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
SP+ S A T + +P +P+ SP SP Y+ SP + G
Sbjct: 1857 SPVYSPTSPAYSPTSPKYSPT-------SPKYSPTSPIYSPTSPAYSPTSTG-------- 1901
Query: 203 YAPASPAYMATSPGMGYSPSTPALAVSSPGYSPG---YSPTSPSVGARGGPAAGYASPQS 373
Y+P SP Y +SP YSP+TP + +SP YSP YSP++P+ + G + Y SP
Sbjct: 1902 YSPTSPEYSPSSPK--YSPTTPQYSPTSPKYSPASPTYSPSTPTDKSVG--SINY-SPLE 1956
Query: 374 PGYVPTSPAYARPGTV-----------VAAANV----YSPSSPA 460
P Y P +P Y+ GT AA N+ YSPSSP+
Sbjct: 1957 PDYSPGTPTYSPDGTPTYSPDGRGFSGTAAKNISPMDYSPSSPS 2000
Score = 60.8 bits (146), Expect = 5e-08
Identities = 49/149 (32%), Positives = 68/149 (45%), Gaps = 29/149 (19%)
Frame = +2
Query: 161 GGGLGGGPAGGAGAYAPA-SPAYMATSPGMGYSPSTPALAVSSPGYSPGYSPTSPSVGAR 337
GG G A + A +P +P +PG G S PAL + +SP++ S +
Sbjct: 1495 GGVFFGSAASPSNAMSPQMTPWNQGHTPGYGDGWS-PALGSGMTPGAASFSPSAHSDASG 1553
Query: 338 GGPAAGYA--------------------------SPQSPGYVPTSPAYA--RPGTVVAAA 433
PA G++ SP SPGY PTSP Y+ PG +
Sbjct: 1554 FSPAGGFSPAWSPQDSIPSYSPNSPAFNPQSPAMSPSSPGYSPTSPLYSPTSPGYSPTSP 1613
Query: 434 NVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
+ YSP+SP YSP SP+Y + +SP+Y P S
Sbjct: 1614 S-YSPTSPGYSPTSPSY-SPTSPSYSPTS 1640
[5][TOP]
>UniRef100_B9SXC0 DNA-directed RNA polymerase n=1 Tax=Ricinus communis
RepID=B9SXC0_RICCO
Length = 1855
Score = 114 bits (285), Expect = 4e-24
Identities = 73/174 (41%), Positives = 98/174 (56%), Gaps = 5/174 (2%)
Frame = +2
Query: 14 ASFSPIMSSADAAGRATPGRM--TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPA 187
A FSP +S + +PG +PG SP+ +P SP SPGY+ SP + G +
Sbjct: 1524 AQFSPYVSGMPFSPTLSPGYSPSSPGYSPS---SPGYSPTSPGYSPTSPGYSP-TSPGYS 1579
Query: 188 GGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGY 358
+ Y+P+SP Y TSP YSP++P+ + +SP YSP YSPTSPS P +
Sbjct: 1580 PTSPTYSPSSPGYSPTSPA--YSPTSPSYSPTSPSYSPTSPSYSPTSPSY----SPTSPS 1633
Query: 359 ASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
SP SP Y PTSP Y+ + YSP+SPAYSP SP+Y + +SP+Y P S
Sbjct: 1634 YSPTSPSYSPTSPVYS------PTSPAYSPTSPAYSPTSPSY-SPTSPSYSPTS 1680
Score = 99.8 bits (247), Expect = 1e-19
Identities = 68/167 (40%), Positives = 88/167 (52%), Gaps = 19/167 (11%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP +P SP SP Y+ SP + + + AY+P SPAY TSP YS
Sbjct: 1624 SPSYSPT---SPSYSPTSPSYSPTSPVY--------SPTSPAYSPTSPAYSPTSPS--YS 1670
Query: 257 PSTPALAVSSPGYSP---GYSPTSPSVG----ARGGPAAGYA------SPQSPGYVPTSP 397
P++P+ + +SP YSP YSPTSPS A + GY+ SP SP Y PTSP
Sbjct: 1671 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSP 1730
Query: 398 AYARPGTVVAAANVYSPSSP------AYSPFSPNYAAASSPAYQPPS 520
+Y + + YSPSSP YSP SPNY + +SP+Y P S
Sbjct: 1731 SYNPQSAKYSPSLAYSPSSPRLSPSSPYSPTSPNY-SPTSPSYSPTS 1776
Score = 96.3 bits (238), Expect = 1e-18
Identities = 67/182 (36%), Positives = 88/182 (48%), Gaps = 16/182 (8%)
Frame = +2
Query: 23 SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
SP+ S A T +P +P SP SP Y+ SP + + + +
Sbjct: 1645 SPVYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSY--------SPTSPS 1696
Query: 203 YAPASPAYMATSPGMGYSPSTPALAVSSPGYSP----------------GYSPTSPSVGA 334
Y+P SPAY TSP GYSP++P+ + +SP YSP YSP+SP
Sbjct: 1697 YSPTSPAYSPTSP--GYSPTSPSYSPTSPSYSPTSPSYNPQSAKYSPSLAYSPSSP---- 1750
Query: 335 RGGPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQP 514
R P++ Y SP SP Y PTSP+Y+ + YSPSSP YSP SP Y + P Y P
Sbjct: 1751 RLSPSSPY-SPTSPNYSPTSPSYS------PTSPSYSPSSPTYSPSSP-YNSGVGPDYSP 1802
Query: 515 PS 520
S
Sbjct: 1803 SS 1804
Score = 94.4 bits (233), Expect = 4e-18
Identities = 65/158 (41%), Positives = 80/158 (50%), Gaps = 9/158 (5%)
Frame = +2
Query: 74 MTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGA--GAYAPASPAYMATSPGM 247
MTP RSP ++P G + S L P A Y P SPG
Sbjct: 1489 MTPARSPVS-----VTPYHDGMMSPSYLLSPSLRLSPTTDAQFSPYVSGMPFSPTLSPG- 1542
Query: 248 GYSPSTPALAVSSPGY---SPGYSPTSPSVGARG---GPAAGYASPQSPGYVPTSPAYAR 409
YSPS+P + SSPGY SPGYSPTSP P + SP SPGY PTSPAY+
Sbjct: 1543 -YSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSP 1601
Query: 410 PGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
+ + YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1602 TSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 1638
Score = 87.0 bits (214), Expect = 7e-16
Identities = 63/154 (40%), Positives = 80/154 (51%), Gaps = 6/154 (3%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATS----PG 244
+P SP +P SP SPGY+ SP + + + +Y+P SP+Y S P
Sbjct: 1694 SPSYSPT---SPAYSPTSPGYSPTSPSY--------SPTSPSYSPTSPSYNPQSAKYSPS 1742
Query: 245 MGYSPSTPALAVSSP--GYSPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGT 418
+ YSPS+P L+ SSP SP YSPTSPS P + SP SP Y P+SP + G
Sbjct: 1743 LAYSPSSPRLSPSSPYSPTSPNYSPTSPSYS----PTSPSYSPSSPTYSPSSPYNSGVGP 1798
Query: 419 VVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
YSPSSP YSP S Y + S+P Y P S
Sbjct: 1799 ------DYSPSSPQYSP-SAGY-SPSAPGYSPSS 1824
Score = 77.0 bits (188), Expect = 7e-13
Identities = 57/164 (34%), Positives = 80/164 (48%), Gaps = 3/164 (1%)
Frame = +2
Query: 17 SFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGA 196
S+SP S A +PG SP +P SP SP Y+ SP + +
Sbjct: 1689 SYSPTSPSYSPTSPAY-SPTSPGYSPT---SPSYSPTSPSYSPTSPSYNPQ--SAKYSPS 1742
Query: 197 GAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASP 367
AY+P+SP +SP YSP++P + +SP YSP YSP+SP+ P++ Y S
Sbjct: 1743 LAYSPSSPRLSPSSP---YSPTSPNYSPTSPSYSPTSPSYSPSSPTY----SPSSPYNSG 1795
Query: 368 QSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASS 499
P Y P+SP Y + + YSPS+P YSP S + +S
Sbjct: 1796 VGPDYSPSSPQY-------SPSAGYSPSAPGYSPSSTSQYTQTS 1832
[6][TOP]
>UniRef100_O77165 DNA-directed RNA polymerase (Fragment) n=1 Tax=Breviata anathema
RepID=O77165_9EUKA
Length = 1690
Score = 114 bits (285), Expect = 4e-24
Identities = 77/171 (45%), Positives = 97/171 (56%), Gaps = 4/171 (2%)
Frame = +2
Query: 20 FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAG 199
+ P+ S AAG + +P SPA +P SPASP Y+ SP + PA +
Sbjct: 1494 YIPVPGSPAAAGYSPA---SPAYSPA---SPAYSPASPAYSPASPAYS------PA--SP 1539
Query: 200 AYAPASPAYMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYASPQ 370
AY+PASPAY SP YSP++PA + +SP Y SP YSP SP+ PA+ SP
Sbjct: 1540 AYSPASPAYSPASPA--YSPASPAYSPASPAYSPASPAYSPASPAY----SPASPAYSPA 1593
Query: 371 SPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
SP Y P SPAY+ + A+ YSP+SPAYSP SP Y+ A SPAY P S
Sbjct: 1594 SPAYSPASPAYSPASPAYSPASPAYSPASPAYSPASPAYSPA-SPAYSPAS 1643
Score = 113 bits (283), Expect = 7e-24
Identities = 79/181 (43%), Positives = 98/181 (54%), Gaps = 10/181 (5%)
Frame = +2
Query: 8 ATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPA 187
A A +SP + A A +P SPA +P SPASP Y+ SP + PA
Sbjct: 1502 AAAGYSPASPAYSPASPAY-SPASPAYSPA---SPAYSPASPAYSPASPAYS------PA 1551
Query: 188 GGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSPG---YSPTSPSVGARGGPAAGY 358
+ AY+PASPAY SP YSP++PA + +SP YSP YSP SP+ PA+
Sbjct: 1552 --SPAYSPASPAYSPASPA--YSPASPAYSPASPAYSPASPAYSPASPAYS----PASPA 1603
Query: 359 ASPQSPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAAS------SPAYQPP 517
SP SP Y P SPAY+ + A+ YSP+SPAYSP SP Y+ AS SPAY P
Sbjct: 1604 YSPASPAYSPASPAYSPASPAYSPASPAYSPASPAYSPASPAYSPASPAYGPASPAYSPA 1663
Query: 518 S 520
S
Sbjct: 1664 S 1664
Score = 111 bits (277), Expect = 4e-23
Identities = 76/173 (43%), Positives = 96/173 (55%), Gaps = 4/173 (2%)
Frame = +2
Query: 8 ATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPA 187
A+ ++SP + A A +P SPA +P SPASP Y+ SP + PA
Sbjct: 1530 ASPAYSPASPAYSPASPAY-SPASPAYSPA---SPAYSPASPAYSPASPAYS------PA 1579
Query: 188 GGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSPG---YSPTSPSVGARGGPAAGY 358
+ AY+PASPAY SP YSP++PA + +SP YSP YSP SP+ PA+
Sbjct: 1580 --SPAYSPASPAYSPASPA--YSPASPAYSPASPAYSPASPAYSPASPAYS----PASPA 1631
Query: 359 ASPQSPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQP 514
SP SP Y P SPAY+ A+ YSP+SPAYSP SP Y+ A SPAY P
Sbjct: 1632 YSPASPAYSPASPAYSPASPAYGPASPAYSPASPAYSPASPAYSPA-SPAYDP 1683
Score = 106 bits (264), Expect = 1e-21
Identities = 71/171 (41%), Positives = 90/171 (52%), Gaps = 4/171 (2%)
Frame = +2
Query: 20 FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAG 199
FSP ++ + + G M G P P+SPG P G G + +
Sbjct: 1460 FSPSVTMSPSGGFGMGMGMGMGDIPV--------PSSPGPFGYIPVPGSPAAAGYSPASP 1511
Query: 200 AYAPASPAYMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYASPQ 370
AY+PASPAY SP YSP++PA + +SP Y SP YSP SP+ PA+ SP
Sbjct: 1512 AYSPASPAYSPASP--AYSPASPAYSPASPAYSPASPAYSPASPAY----SPASPAYSPA 1565
Query: 371 SPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
SP Y P SPAY+ + A+ YSP+SPAYSP SP Y+ A SPAY P S
Sbjct: 1566 SPAYSPASPAYSPASPAYSPASPAYSPASPAYSPASPAYSPA-SPAYSPAS 1615
Score = 103 bits (257), Expect = 7e-21
Identities = 71/166 (42%), Positives = 90/166 (54%), Gaps = 4/166 (2%)
Frame = +2
Query: 8 ATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPA 187
A+ ++SP + A A +P SPA +P SPASP Y+ SP + PA
Sbjct: 1537 ASPAYSPASPAYSPASPAY-SPASPAYSPA---SPAYSPASPAYSPASPAYS------PA 1586
Query: 188 GGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSPG---YSPTSPSVGARGGPAAGY 358
+ AY+PASPAY SP YSP++PA + +SP YSP YSP SP+ PA+
Sbjct: 1587 --SPAYSPASPAYSPASPA--YSPASPAYSPASPAYSPASPAYSPASPAYS----PASPA 1638
Query: 359 ASPQSPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAA 493
SP SP Y P SPAY + A+ YSP+SPAYSP SP Y A
Sbjct: 1639 YSPASPAYSPASPAYGPASPAYSPASPAYSPASPAYSPASPAYDPA 1684
Score = 93.2 bits (230), Expect = 1e-17
Identities = 65/160 (40%), Positives = 83/160 (51%), Gaps = 3/160 (1%)
Frame = +2
Query: 8 ATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPA 187
A+ ++SP + A A +P SPA +P SPASP Y+ SP + PA
Sbjct: 1558 ASPAYSPASPAYSPASPAY-SPASPAYSPA---SPAYSPASPAYSPASPAYS------PA 1607
Query: 188 GGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGY 358
+ AY+PASPAY SP YSP++PA + +SP Y SP YSP SP+ G
Sbjct: 1608 --SPAYSPASPAYSPASPA--YSPASPAYSPASPAYSPASPAYSPASPAYG--------- 1654
Query: 359 ASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSP 478
P SP Y P SPAY+ A+ YSP+SPAY P P
Sbjct: 1655 --PASPAYSPASPAYS------PASPAYSPASPAYDPAEP 1686
[7][TOP]
>UniRef100_B0XAQ9 DNA-directed RNA polymerase n=1 Tax=Culex quinquefasciatus
RepID=B0XAQ9_CULQU
Length = 1874
Score = 114 bits (285), Expect = 4e-24
Identities = 74/171 (43%), Positives = 97/171 (56%), Gaps = 3/171 (1%)
Frame = +2
Query: 17 SFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGA 196
S+SP+ S + G + M+P + +P SP+SP YAA SP GG G + +
Sbjct: 1531 SWSPMPGSPSSPGPS----MSPYFPSSPSASPSYSPSSPNYAAASP---GGASPGYSPTS 1583
Query: 197 GAYAPASPAYMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYASP 367
+Y+P SP Y TSP YSP++P + +SP Y SP YSPTSP P A YA P
Sbjct: 1584 PSYSPTSPNYSPTSP--RYSPTSPNYSPTSPNYSPTSPSYSPTSPLY----SPTATYA-P 1636
Query: 368 QSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
SP Y PTSP+Y+ + YSP+SPAYSP SP+Y + SSP+Y P S
Sbjct: 1637 SSPAYSPTSPSYSPTSPYSPTSPSYSPTSPAYSPTSPSY-SPSSPSYSPTS 1686
Score = 107 bits (266), Expect = 7e-22
Identities = 73/179 (40%), Positives = 94/179 (52%), Gaps = 11/179 (6%)
Frame = +2
Query: 17 SFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGA 196
SFSP S DA+G + PG SP+SPG +MSP F P+
Sbjct: 1516 SFSPSAQS-DASGMSPSWSPMPG-----------SPSSPG-PSMSPYFPSSPSASPS--- 1559
Query: 197 GAYAPASPAYMATSPG---MGYSPSTPALAVSSPGYSPG---YSPTSPSVGARGGPAAGY 358
Y+P+SP Y A SPG GYSP++P+ + +SP YSP YSPTSP+
Sbjct: 1560 --YSPSSPNYAAASPGGASPGYSPTSPSYSPTSPNYSPTSPRYSPTSPNY---------- 1607
Query: 359 ASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAAS-----SPAYQPPS 520
SP SP Y PTSP+Y+ + + Y+PSSPAYSP SP+Y+ S SP+Y P S
Sbjct: 1608 -SPTSPNYSPTSPSYSPTSPLYSPTATYAPSSPAYSPTSPSYSPTSPYSPTSPSYSPTS 1665
Score = 106 bits (264), Expect = 1e-21
Identities = 67/173 (38%), Positives = 95/173 (54%), Gaps = 6/173 (3%)
Frame = +2
Query: 20 FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRM---SPASPGYAAMSPRFGGGLGGGPAG 190
+SP + A ++ +P +P SP ++P SP SP Y+ SP + +
Sbjct: 1628 YSPTATYAPSSPAYSP--TSPSYSPTSPYSPTSPSYSPTSPAYSPTSPSYSPS-SPSYSP 1684
Query: 191 GAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSPG---YSPTSPSVGARGGPAAGYA 361
+ +Y+P SP+Y TSP Y+P+TP+ + +SP YSP YSPTSPS P++
Sbjct: 1685 TSPSYSPTSPSYSPTSPN--YTPATPSYSPTSPNYSPSSPHYSPTSPSYS----PSSPKY 1738
Query: 362 SPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
SP SP Y PTSP+Y A+ YSP+SP YSP SP+Y + SSP + P S
Sbjct: 1739 SPTSPSYSPTSPSYGGSPQYTPASPQYSPTSPKYSPTSPSY-SPSSPQHSPGS 1790
Score = 95.9 bits (237), Expect = 2e-18
Identities = 70/182 (38%), Positives = 91/182 (50%), Gaps = 11/182 (6%)
Frame = +2
Query: 8 ATASFSPIMSS-ADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGP 184
AT S+SP + + ++ +P +P SP+ +P+ SP SP Y+ SP +GG
Sbjct: 1706 ATPSYSPTSPNYSPSSPHYSP--TSPSYSPS---SPKYSPTSPSYSPTSPSYGG------ 1754
Query: 185 AGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSPGYS--------PTSPSVGARG 340
+ Y PASP Y TSP YSP++P+ + SSP +SPG S PT AR
Sbjct: 1755 ---SPQYTPASPQYSPTSPK--YSPTSPSYSPSSPQHSPGSSGSNFMVNSPTYSPTTARY 1809
Query: 341 GPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAAS--SPAYQP 514
P SP S Y PTSP Y + YSPSSPAYSP Y+ +S SP Y P
Sbjct: 1810 SPNMSSYSPGSQKYSPTSPVYT------PTSPHYSPSSPAYSPTGQGYSPSSPASPTYSP 1863
Query: 515 PS 520
S
Sbjct: 1864 TS 1865
Score = 94.4 bits (233), Expect = 4e-18
Identities = 72/200 (36%), Positives = 93/200 (46%), Gaps = 36/200 (18%)
Frame = +2
Query: 23 SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
SP S A T +P +P SP SP Y+ SP + PA +
Sbjct: 1658 SPSYSPTSPAYSPTSPSYSPSSPSYSPTSPSYSPTSPSYSPTSPNYT------PA--TPS 1709
Query: 203 YAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGA--RGGPAAGYASP 367
Y+P SP Y +SP YSP++P+ + SSP YSP YSPTSPS G + PA+ SP
Sbjct: 1710 YSPTSPNYSPSSPH--YSPTSPSYSPSSPKYSPTSPSYSPTSPSYGGSPQYTPASPQYSP 1767
Query: 368 QSPGYVPTSPAYA----------------------RPGTVVAAANV---------YSPSS 454
SP Y PTSP+Y+ P T + N+ YSP+S
Sbjct: 1768 TSPKYSPTSPSYSPSSPQHSPGSSGSNFMVNSPTYSPTTARYSPNMSSYSPGSQKYSPTS 1827
Query: 455 PAYSPFSPNYAAASSPAYQP 514
P Y+P SP+Y + SSPAY P
Sbjct: 1828 PVYTPTSPHY-SPSSPAYSP 1846
Score = 72.4 bits (176), Expect = 2e-11
Identities = 55/144 (38%), Positives = 74/144 (51%), Gaps = 6/144 (4%)
Frame = +2
Query: 107 TPRMSPA-SPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVS 283
TP MSPA +P + +P G G ++P+ P T G +SPS +
Sbjct: 1480 TPSMSPAMTPWQQSQTP------------GYGEWSPSGPPSGMTPGGPSFSPSAQS---D 1524
Query: 284 SPGYSPGYSPTSPSVGARGGPAAGY--ASPQ-SPGYVPTSPAY--ARPGTVVAAANVYSP 448
+ G SP +SP S + G + Y +SP SP Y P+SP Y A PG A+ YSP
Sbjct: 1525 ASGMSPSWSPMPGSPSSPGPSMSPYFPSSPSASPSYSPSSPNYAAASPG---GASPGYSP 1581
Query: 449 SSPAYSPFSPNYAAASSPAYQPPS 520
+SP+YSP SPNY + +SP Y P S
Sbjct: 1582 TSPSYSPTSPNY-SPTSPRYSPTS 1604
[8][TOP]
>UniRef100_UPI00005A0B1A PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
(RPB1) isoform 6 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B1A
Length = 1767
Score = 113 bits (283), Expect = 7e-24
Identities = 69/172 (40%), Positives = 95/172 (55%), Gaps = 4/172 (2%)
Frame = +2
Query: 17 SFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGA 196
++SP S + G ++P +PG G +P SP SP Y SP GG +
Sbjct: 1538 AWSPTPGSPGSPGPSSPYIPSPGELSCGAMSPSYSPTSPAYEPRSP-------GGYTPQS 1590
Query: 197 GAYAPASPAYMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYASP 367
+Y+P SP+Y TSP YSP++P + +SP Y SP YSPTSPS P + SP
Sbjct: 1591 PSYSPTSPSYSPTSP--SYSPTSPNYSPTSPSYSPTSPSYSPTSPSY----SPTSPSYSP 1644
Query: 368 QSPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
SP Y PTSP+Y+ + + YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1645 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 1695
Score = 101 bits (251), Expect = 4e-20
Identities = 65/153 (42%), Positives = 85/153 (55%), Gaps = 5/153 (3%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP +P SP SP Y+ SP + + + +Y+P SP+Y TSP YS
Sbjct: 1632 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 1678
Query: 257 PSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYA--RPGTV 421
P++P+ + +SP YSP YSPTSPS P + SP SP Y PTSP Y+ RP
Sbjct: 1679 PTSPSYSPTSPSYSPTSPSYSPTSPSYS----PTSPSYSPTSPSYSPTSPNYSPSRPNYT 1734
Query: 422 VAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
+ + YSP+SP+YSP SPNY SP Y P S
Sbjct: 1735 PTSPS-YSPTSPSYSPTSPNY-TPMSPNYSPTS 1765
Score = 98.6 bits (244), Expect = 2e-19
Identities = 74/190 (38%), Positives = 93/190 (48%), Gaps = 38/190 (20%)
Frame = +2
Query: 65 PGRMTPGRSPAGRFTPRMSP----ASPGYAAMSPRFG---GGLGGGP--AGGAGAYAPA- 214
PG GR P G +P M+P A+P Y A SPR G G G P A A ++P
Sbjct: 1476 PGLGAAGRDPMGGISPAMTPWNQGATPAYGAWSPRSGMTPGAAGFSPSAASDASGFSPGY 1535
Query: 215 SPAYMAT--SPGM---------------------GYSPSTPALAVSSPG----YSPGYSP 313
SPA+ T SPG YSP++PA SPG SP YSP
Sbjct: 1536 SPAWSPTPGSPGSPGPSSPYIPSPGELSCGAMSPSYSPTSPAYEPRSPGGYTPQSPSYSP 1595
Query: 314 TSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAA 490
TSPS P + SP SP Y PTSP+Y+ + + YSP+SP+YSP SP+Y +
Sbjct: 1596 TSPSYS----PTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-S 1650
Query: 491 ASSPAYQPPS 520
+SP+Y P S
Sbjct: 1651 PTSPSYSPTS 1660
Score = 90.1 bits (222), Expect = 8e-17
Identities = 57/140 (40%), Positives = 76/140 (54%), Gaps = 5/140 (3%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP +P SP SP Y+ SP + + + +Y+P SP+Y TSP YS
Sbjct: 1646 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 1692
Query: 257 PSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYA--RPGTV 421
P++P+ + +SP YSP YSPTSPS P + SP P Y PTSP+Y+ P
Sbjct: 1693 PTSPSYSPTSPSYSPTSPSYSPTSPSYS----PTSPNYSPSRPNYTPTSPSYSPTSPSYS 1748
Query: 422 VAAANVYSPSSPAYSPFSPN 481
+ N Y+P SP YSP SPN
Sbjct: 1749 PTSPN-YTPMSPNYSPTSPN 1767
[9][TOP]
>UniRef100_P18616 DNA-directed RNA polymerase II subunit RPB1 n=1 Tax=Arabidopsis
thaliana RepID=RPB1_ARATH
Length = 1840
Score = 113 bits (283), Expect = 7e-24
Identities = 76/180 (42%), Positives = 101/180 (56%), Gaps = 12/180 (6%)
Frame = +2
Query: 17 SFSPIMSSADAAGRATPGRM--TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAG 190
+FSP SS+ ++PG +PG SP +P SP SPGY+ SP + G +
Sbjct: 1536 AFSP--SSSPGYSPSSPGYSPTSPGYSPT---SPGYSPTSPGYSPTSPTYSPS-SPGYSP 1589
Query: 191 GAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYA 361
+ AY+P SP+Y TSP YSP++P+ + +SP YSP YSPTSPS P +
Sbjct: 1590 TSPAYSPTSPSYSPTSPS--YSPTSPSYSPTSPSYSPTSPSYSPTSPSY----SPTSPAY 1643
Query: 362 SPQSPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAAS------SPAYQPPS 520
SP SP Y PTSPAY+ + + YSP+SP+YSP SP+Y+ S SPAY P S
Sbjct: 1644 SPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTS 1703
Score = 113 bits (282), Expect = 9e-24
Identities = 73/175 (41%), Positives = 97/175 (55%), Gaps = 6/175 (3%)
Frame = +2
Query: 14 ASFSPIMSSADAAGRATPGRM--TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPA 187
A FSP + + ++PG +PG SP +P SP SPGY+ SP +
Sbjct: 1526 AQFSPYVGGMAFSPSSSPGYSPSSPGYSPT---SPGYSPTSPGYSPTSPGYSPTSPTYSP 1582
Query: 188 GGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGY 358
G Y+P SPAY TSP YSP++P+ + +SP YSP YSPTSPS P +
Sbjct: 1583 SSPG-YSPTSPAYSPTSPS--YSPTSPSYSPTSPSYSPTSPSYSPTSPSYS----PTSPS 1635
Query: 359 ASPQSPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
SP SP Y PTSPAY+ + + YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1636 YSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 1689
Score = 102 bits (254), Expect = 2e-20
Identities = 72/173 (41%), Positives = 92/173 (53%), Gaps = 24/173 (13%)
Frame = +2
Query: 74 MTPGRSPA-------GRFTP--------RMSPASPGYAAMSPRFGGGLGGGPAGGAGAYA 208
MTP RSP G +P R+SP S A SP + GG+ P+ G Y+
Sbjct: 1491 MTPARSPVSGTPYHEGMMSPNYLLSPNMRLSPMSD--AQFSP-YVGGMAFSPSSSPG-YS 1546
Query: 209 PASPAYMATSPGMGYSPSTPALAVSSPGYSPG---YSPTSPSVGARGGPAAGYASPQSPG 379
P+SP Y TSPG YSP++P + +SPGYSP YSP+SP P + SP SP
Sbjct: 1547 PSSPGYSPTSPG--YSPTSPGYSPTSPGYSPTSPTYSPSSPGYS----PTSPAYSPTSPS 1600
Query: 380 YVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAAS------SPAYQPPS 520
Y PTSP+Y+ + YSP+SP+YSP SP+Y+ S SPAY P S
Sbjct: 1601 YSPTSPSYS------PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTS 1647
Score = 98.6 bits (244), Expect = 2e-19
Identities = 68/174 (39%), Positives = 91/174 (52%), Gaps = 26/174 (14%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP +P SP SP Y+ SP + + + AY+P SPAY TSP YS
Sbjct: 1619 SPSYSPT---SPSYSPTSPSYSPTSPAY--------SPTSPAYSPTSPAYSPTSPS--YS 1665
Query: 257 PSTPALAVSSPGYSP---GYSPTSPSVG----ARGGPAAGYA------SPQSPGYVPTSP 397
P++P+ + +SP YSP YSPTSPS A + GY+ SP SP Y PTSP
Sbjct: 1666 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYGPTSP 1725
Query: 398 -------------AYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
AY+ ++ A+ YSP+SP YSP SP+Y + +SP+Y P S
Sbjct: 1726 SYNPQSAKYSPSIAYSPSNARLSPASPYSPTSPNYSPTSPSY-SPTSPSYSPSS 1778
Score = 87.8 bits (216), Expect = 4e-16
Identities = 70/206 (33%), Positives = 94/206 (45%), Gaps = 40/206 (19%)
Frame = +2
Query: 17 SFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGA 196
S+SP S A +P SP +P SP SP Y+ SP + + +
Sbjct: 1628 SYSPTSPSYSPTSPAY-SPTSPAYSPT---SPAYSPTSPSYSPTSPSY--------SPTS 1675
Query: 197 GAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVG------------ 331
+Y+P SP+Y TSP YSP++PA + +SPGYSP YSPTSPS G
Sbjct: 1676 PSYSPTSPSYSPTSPS--YSPTSPAYSPTSPGYSPTSPSYSPTSPSYGPTSPSYNPQSAK 1733
Query: 332 -----------ARGGPAAGYA-------------SPQSPGYVPTSPAYARPGTVVAAANV 439
AR PA+ Y+ SP SP Y P+SP Y+ + A+
Sbjct: 1734 YSPSIAYSPSNARLSPASPYSPTSPNYSPTSPSYSPTSPSYSPSSPTYSPSSPYSSGASP 1793
Query: 440 -YSPSSPAYSPFSPNYAAASSPAYQP 514
YSPS+ YSP P Y+ +S+ Y P
Sbjct: 1794 DYSPSA-GYSPTLPGYSPSSTGQYTP 1818
[10][TOP]
>UniRef100_UPI0000E48673 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
(RPB1) isoform 1 n=1 Tax=Strongylocentrotus purpuratus
RepID=UPI0000E48673
Length = 1880
Score = 113 bits (282), Expect = 9e-24
Identities = 71/182 (39%), Positives = 99/182 (54%), Gaps = 12/182 (6%)
Frame = +2
Query: 11 TASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAG 190
+ FSP S A + +PG +PG SP +P SP SPGY+ SP + +
Sbjct: 1545 STGFSPAYSPAWSPQPQSPGSPSPGYSPT---SPSYSPTSPGYSPASPSYSP-TSPSYSP 1600
Query: 191 GAGAYAPASPAYMATSPGMG-----YSPSTPALAVSSPGYSP---GYSPTSPSVGARG-- 340
+ +Y+P SP+Y TSP YSP++P+ + +SP YSP YSPTSPS
Sbjct: 1601 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1660
Query: 341 -GPAAGYASPQSPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQP 514
P + SP SP Y PTSP+Y+ + + YSP+SP+YSP SP+Y + +SP+Y P
Sbjct: 1661 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSP 1719
Query: 515 PS 520
S
Sbjct: 1720 SS 1721
Score = 105 bits (261), Expect = 3e-21
Identities = 70/173 (40%), Positives = 95/173 (54%), Gaps = 4/173 (2%)
Frame = +2
Query: 14 ASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGG 193
AS+SP+M S TPG PG SPA + SPA + P+ G G +
Sbjct: 1521 ASWSPMMGSG-----MTPGG--PGFSPANSESTGFSPAYSPAWSPQPQSPGSPSPGYSPT 1573
Query: 194 AGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYAS 364
+ +Y+P SP Y SP YSP++P+ + +SP Y SP YSPTSPS P + S
Sbjct: 1574 SPSYSPTSPGYSPASP--SYSPTSPSYSPTSPSYSPTSPSYSPTSPSY----SPTSPSYS 1627
Query: 365 PQSPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
P SP Y PTSP+Y+ + + YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1628 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 1679
Score = 102 bits (253), Expect = 2e-20
Identities = 63/152 (41%), Positives = 86/152 (56%), Gaps = 4/152 (2%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP +P SP SP Y+ SP + + + +Y+P SP+Y TSP YS
Sbjct: 1658 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 1704
Query: 257 PSTPALAVSSPGYSPG---YSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVA 427
P++P+ + +SP YSP YSPTSPS P + SPQSP Y P SP+Y+ +
Sbjct: 1705 PTSPSYSPTSPSYSPSSPKYSPTSPSY----SPTSPSYSPQSPSYSPGSPSYSPSSPKYS 1760
Query: 428 AAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
+ YSP+SP+YSP SPN+ + SSP Y P S
Sbjct: 1761 PTSPSYSPTSPSYSPTSPNF-SPSSPTYSPAS 1791
Score = 100 bits (249), Expect = 6e-20
Identities = 65/156 (41%), Positives = 87/156 (55%), Gaps = 8/156 (5%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP +P SP SP Y+ SP + + + +Y+P SP+Y TSP YS
Sbjct: 1665 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 1711
Query: 257 PSTPALAVSSPGYSP---GYSPTSPSVGARG---GPAAGYASPQSPGYVPTSPAYA--RP 412
P++P+ + SSP YSP YSPTSPS + P + SP SP Y PTSP+Y+ P
Sbjct: 1712 PTSPSYSPSSPKYSPTSPSYSPTSPSYSPQSPSYSPGSPSYSPSSPKYSPTSPSYSPTSP 1771
Query: 413 GTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
+ N +SPSSP YSP SP+Y + +SP Y P S
Sbjct: 1772 SYSPTSPN-FSPSSPTYSPASPSY-SPTSPKYSPSS 1805
Score = 99.4 bits (246), Expect = 1e-19
Identities = 63/154 (40%), Positives = 83/154 (53%), Gaps = 6/154 (3%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP +P SP SP Y+ SP++ + + +Y+P SP+Y SP YS
Sbjct: 1700 SPSYSPT---SPSYSPTSPSYSPSSPKY--------SPTSPSYSPTSPSYSPQSP--SYS 1746
Query: 257 PSTPALAVSSPGY---SPGYSPTSPSVGARG---GPAAGYASPQSPGYVPTSPAYARPGT 418
P +P+ + SSP Y SP YSPTSPS P++ SP SP Y PTSP Y+
Sbjct: 1747 PGSPSYSPSSPKYSPTSPSYSPTSPSYSPTSPNFSPSSPTYSPASPSYSPTSPKYS---- 1802
Query: 419 VVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
++ YSP+SP YSP SP Y+ A SP Y P S
Sbjct: 1803 --PSSPKYSPTSPTYSPTSPKYSPA-SPTYSPTS 1833
Score = 93.6 bits (231), Expect = 8e-18
Identities = 60/175 (34%), Positives = 84/175 (48%), Gaps = 17/175 (9%)
Frame = +2
Query: 23 SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGG--- 193
SP S + T +P +P SP SP Y+ SP + G
Sbjct: 1700 SPSYSPTSPSYSPTSPSYSPSSPKYSPTSPSYSPTSPSYSPQSPSYSPGSPSYSPSSPKY 1759
Query: 194 ---AGAYAPASPAYMATSPGMG-----YSPSTPALAVSSPGYSPG---YSPTSPS---VG 331
+ +Y+P SP+Y TSP YSP++P+ + +SP YSP YSPTSP+
Sbjct: 1760 SPTSPSYSPTSPSYSPTSPNFSPSSPTYSPASPSYSPTSPKYSPSSPKYSPTSPTYSPTS 1819
Query: 332 ARGGPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAAS 496
+ PA+ SP SP Y P+SP Y+ + YSP+SP+YSP SP+Y+ S
Sbjct: 1820 PKYSPASPTYSPTSPKYSPSSPTYSPTSP---KGSTYSPTSPSYSPTSPSYSPTS 1871
Score = 81.6 bits (200), Expect = 3e-14
Identities = 55/144 (38%), Positives = 74/144 (51%)
Frame = +2
Query: 89 SPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTP 268
SP+ +P+M+P + G M G P G+G T G G+SP+
Sbjct: 1499 SPSQSMSPQMTPWNQGATPMH-----GASWSPMMGSGM----------TPGGPGFSPANS 1543
Query: 269 ALAVSSPGYSPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSP 448
SP YSP +SP S G+ P+ GY SP SP Y PTSP Y+ A+ YSP
Sbjct: 1544 ESTGFSPAYSPAWSPQPQSPGS---PSPGY-SPTSPSYSPTSPGYS------PASPSYSP 1593
Query: 449 SSPAYSPFSPNYAAASSPAYQPPS 520
+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1594 TSPSYSPTSPSY-SPTSPSYSPTS 1616
Score = 74.7 bits (182), Expect = 4e-12
Identities = 46/110 (41%), Positives = 61/110 (55%), Gaps = 3/110 (2%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP+ +P SPASP Y+ SP++ + + Y+P SP Y TSP YS
Sbjct: 1777 SPNFSPS---SPTYSPASPSYSPTSPKY--------SPSSPKYSPTSPTYSPTSPK--YS 1823
Query: 257 PSTPALAVSSPGYSPG---YSPTSPSVGARGGPAAGYASPQSPGYVPTSP 397
P++P + +SP YSP YSPTSP G+ P + SP SP Y PTSP
Sbjct: 1824 PASPTYSPTSPKYSPSSPTYSPTSPK-GSTYSPTSPSYSPTSPSYSPTSP 1872
Score = 57.4 bits (137), Expect = 6e-07
Identities = 36/104 (34%), Positives = 52/104 (50%), Gaps = 1/104 (0%)
Frame = +2
Query: 23 SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
SP S A + T + +P +P SP SP Y+ SP + + +
Sbjct: 1784 SPTYSPASPSYSPTSPKYSPSSPKYSPTSPTYSPTSPKYSPASPTY--------SPTSPK 1835
Query: 203 YAPASPAYMATSP-GMGYSPSTPALAVSSPGYSPGYSPTSPSVG 331
Y+P+SP Y TSP G YSP++P+ + +SP YSP TSP +G
Sbjct: 1836 YSPSSPTYSPTSPKGSTYSPTSPSYSPTSPSYSP----TSPGMG 1875
[11][TOP]
>UniRef100_A7NVN7 DNA-directed RNA polymerase n=1 Tax=Vitis vinifera RepID=A7NVN7_VITVI
Length = 1010
Score = 112 bits (281), Expect = 1e-23
Identities = 74/184 (40%), Positives = 100/184 (54%), Gaps = 15/184 (8%)
Frame = +2
Query: 14 ASFSPIMSSADAAGRATPGRM--TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGG-GP 184
A FSP + + ++PG +PG SP+ +P SP SPGY+ SP + G P
Sbjct: 761 AQFSPYVGGMAFSPTSSPGYSPSSPGYSPS---SPGYSPTSPGYSPTSPGYSPTSPGYSP 817
Query: 185 AG-----GAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARG 340
+ Y+P SPAY TSP YSP++P+ + +SP YSP YSPTSPS
Sbjct: 818 TSPTYSPSSPGYSPTSPAYSPTSPS--YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 875
Query: 341 ---GPAAGYASPQSPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAY 508
P + SP SP Y PTSPAY+ + + YSP+SP+YSP SP+Y + +SP+Y
Sbjct: 876 PSYSPTSPVYSPTSPSYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSY-SPTSPSY 934
Query: 509 QPPS 520
P S
Sbjct: 935 SPTS 938
Score = 92.8 bits (229), Expect = 1e-17
Identities = 67/161 (41%), Positives = 82/161 (50%), Gaps = 12/161 (7%)
Frame = +2
Query: 74 MTPGRSPAGRFTPRMSPASPGYAA-----MSPRFGGGLGGGPAGGAGAYAPASPAYMATS 238
MTP RSP SP Y +SP P G A++P S S
Sbjct: 726 MTPSRSPITGTPYHDGMMSPNYLLSPNLRLSPITDAQFS--PYVGGMAFSPTS------S 777
Query: 239 PGMGYSPSTPALAVSSPGY---SPGYSPTSPSVGARG---GPAAGYASPQSPGYVPTSPA 400
PG YSPS+P + SSPGY SPGYSPTSP P + SP SPGY PTSPA
Sbjct: 778 PG--YSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPA 835
Query: 401 YARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
Y+ + + YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 836 YSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 875
Score = 92.4 bits (228), Expect = 2e-17
Identities = 59/145 (40%), Positives = 76/145 (52%), Gaps = 9/145 (6%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP +P SP SP Y+ SP + + + +Y+P SP+Y TSP YS
Sbjct: 889 SPSYSPT---SPAYSPTSPAYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 935
Query: 257 PSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVA 427
P++P+ + +SP YSP GYSPTSPS SP SP Y PTSP+Y +
Sbjct: 936 PTSPSYSPTSPAYSPTSPGYSPTSPSY-----------SPTSPSYSPTSPSYNPSSAKYS 984
Query: 428 AANVYSPSSP------AYSPFSPNY 484
+ YSPSSP YSP SPNY
Sbjct: 985 PSLAYSPSSPRLSPSSPYSPTSPNY 1009
Score = 90.1 bits (222), Expect = 8e-17
Identities = 62/156 (39%), Positives = 80/156 (51%), Gaps = 6/156 (3%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP +P SP SP Y+ SP + + + AY+P SPAY TSP YS
Sbjct: 868 SPSYSPT---SPSYSPTSPVYSPTSPSY--------SPTSPAYSPTSPAYSPTSPS--YS 914
Query: 257 PSTPALAVSSPGYSP---GYSPTSPSVGARG---GPAAGYASPQSPGYVPTSPAYARPGT 418
P++P+ + +SP YSP YSPTSPS P + SP SP Y PTSP+
Sbjct: 915 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPS------ 968
Query: 419 VVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPSRR 526
YSP+SP+Y+P S Y + S AY P S R
Sbjct: 969 -------YSPTSPSYNPSSAKY--SPSLAYSPSSPR 995
[12][TOP]
>UniRef100_UPI0001985649 PREDICTED: similar to NRPB1 (RNA POLYMERASE II LARGE SUBUNIT); DNA
binding / DNA-directed RNA polymerase n=1 Tax=Vitis
vinifera RepID=UPI0001985649
Length = 1848
Score = 112 bits (280), Expect = 2e-23
Identities = 74/173 (42%), Positives = 93/173 (53%), Gaps = 4/173 (2%)
Frame = +2
Query: 14 ASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGG 193
A FSP + G A +PG SP+ +P SP+SPGY+ SP
Sbjct: 1524 AQFSPYVG-----GMAFSPTSSPGYSPS---SPGYSPSSPGYSPTSP------------- 1562
Query: 194 AGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYAS 364
Y+P SP Y TSPG YSP++P + SSPGYSP YSPTSPS P + S
Sbjct: 1563 --GYSPTSPGYSPTSPG--YSPTSPTYSPSSPGYSPTSPAYSPTSPSYS----PTSPSYS 1614
Query: 365 PQSPGYVPTSPAYARPGTVVAAANV-YSPSSPAYSPFSPNYAAASSPAYQPPS 520
P SP Y PTSP+Y+ + + YSP+SP YSP SP+Y + +SPAY P S
Sbjct: 1615 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPVYSPTSPSY-SPTSPAYSPTS 1666
Score = 111 bits (277), Expect = 4e-23
Identities = 76/188 (40%), Positives = 101/188 (53%), Gaps = 20/188 (10%)
Frame = +2
Query: 17 SFSPIMS-----SADAAGRATPGRM--TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLG 175
+FSP S S+ ++PG +PG SP +P SP SPGY+ SP +
Sbjct: 1534 AFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPT---SPGYSPTSPGYSPTSPTYSPS-S 1589
Query: 176 GGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARG-- 340
G + + AY+P SP+Y TSP YSP++P+ + +SP YSP YSPTSPS
Sbjct: 1590 PGYSPTSPAYSPTSPSYSPTSPS--YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPV 1647
Query: 341 -GPAAGYASPQSPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAAS------ 496
P + SP SP Y PTSPAY+ + + YSP+SP+YSP SP+Y+ S
Sbjct: 1648 YSPTSPSYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1707
Query: 497 SPAYQPPS 520
SPAY P S
Sbjct: 1708 SPAYSPTS 1715
Score = 99.4 bits (246), Expect = 1e-19
Identities = 64/157 (40%), Positives = 84/157 (53%), Gaps = 9/157 (5%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP +P SP SP Y+ SP + + + +Y+P SP+Y TSP YS
Sbjct: 1652 SPSYSPT---SPAYSPTSPAYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 1698
Query: 257 PSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVA 427
P++P+ + +SP YSP GYSPTSPS SP SP Y PTSP+Y +
Sbjct: 1699 PTSPSYSPTSPAYSPTSPGYSPTSPSY-----------SPTSPSYSPTSPSYNPSSAKYS 1747
Query: 428 AANVYSPSSP------AYSPFSPNYAAASSPAYQPPS 520
+ YSPSSP YSP SPNY + +SP+Y P S
Sbjct: 1748 PSLAYSPSSPRLSPSSPYSPTSPNY-SPTSPSYSPTS 1783
Score = 96.7 bits (239), Expect = 9e-19
Identities = 66/184 (35%), Positives = 89/184 (48%), Gaps = 18/184 (9%)
Frame = +2
Query: 23 SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
SP+ S + T +P +P SP SP Y+ SP + + + +
Sbjct: 1645 SPVYSPTSPSYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSY--------SPTSPS 1696
Query: 203 YAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVG---ARGGPAAGYA- 361
Y+P SP+Y TSP YSP++P + +SP YSP YSPTSPS A+ P+ Y+
Sbjct: 1697 YSPTSPSYSPTSPA--YSPTSPGYSPTSPSYSPTSPSYSPTSPSYNPSSAKYSPSLAYSP 1754
Query: 362 -----------SPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAY 508
SP SP Y PTSP+Y+ + YSP+SP YSP SP Y + SP Y
Sbjct: 1755 SSPRLSPSSPYSPTSPNYSPTSPSYS------PTSPSYSPASPTYSPTSP-YNSGVSPDY 1807
Query: 509 QPPS 520
P S
Sbjct: 1808 SPSS 1811
Score = 92.8 bits (229), Expect = 1e-17
Identities = 67/161 (41%), Positives = 82/161 (50%), Gaps = 12/161 (7%)
Frame = +2
Query: 74 MTPGRSPAGRFTPRMSPASPGYAA-----MSPRFGGGLGGGPAGGAGAYAPASPAYMATS 238
MTP RSP SP Y +SP P G A++P S S
Sbjct: 1489 MTPSRSPITGTPYHDGMMSPNYLLSPNLRLSPITDAQFS--PYVGGMAFSPTS------S 1540
Query: 239 PGMGYSPSTPALAVSSPGY---SPGYSPTSPSVGARG---GPAAGYASPQSPGYVPTSPA 400
PG YSPS+P + SSPGY SPGYSPTSP P + SP SPGY PTSPA
Sbjct: 1541 PG--YSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPA 1598
Query: 401 YARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
Y+ + + YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1599 YSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 1638
Score = 86.7 bits (213), Expect = 9e-16
Identities = 60/153 (39%), Positives = 80/153 (52%), Gaps = 5/153 (3%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATS----PG 244
+P SP +P SP SPGY+ SP + + + +Y+P SP+Y +S P
Sbjct: 1701 SPSYSPT---SPAYSPTSPGYSPTSPSY--------SPTSPSYSPTSPSYNPSSAKYSPS 1749
Query: 245 MGYSPSTPALAVSSPGYSPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVV 424
+ YSPS+P L+ SSP YSPTSP+ P + SP SP Y P SP Y+
Sbjct: 1750 LAYSPSSPRLSPSSP-----YSPTSPNY----SPTSPSYSPTSPSYSPASPTYSPTSPYN 1800
Query: 425 AAANV-YSPSSPAYSPFSPNYAAASSPAYQPPS 520
+ + YSPSSP YSP S Y + S+P Y P S
Sbjct: 1801 SGVSPDYSPSSPQYSP-SAGY-SPSAPGYSPSS 1831
Score = 78.2 bits (191), Expect = 3e-13
Identities = 57/156 (36%), Positives = 76/156 (48%), Gaps = 3/156 (1%)
Frame = +2
Query: 17 SFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGA 196
S+SP S A +PG SP +P SP SP Y+ SP + +
Sbjct: 1696 SYSPTSPSYSPTSPAY-SPTSPGYSPT---SPSYSPTSPSYSPTSPSYNPS--SAKYSPS 1749
Query: 197 GAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASP 367
AY+P+SP +SP YSP++P + +SP YSP YSP SP+ P + Y S
Sbjct: 1750 LAYSPSSPRLSPSSP---YSPTSPNYSPTSPSYSPTSPSYSPASPTY----SPTSPYNSG 1802
Query: 368 QSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFS 475
SP Y P+SP Y + + YSPS+P YSP S
Sbjct: 1803 VSPDYSPSSPQY-------SPSAGYSPSAPGYSPSS 1831
Score = 71.2 bits (173), Expect = 4e-11
Identities = 52/146 (35%), Positives = 72/146 (49%), Gaps = 14/146 (9%)
Frame = +2
Query: 17 SFSPIMSSADAAGRATPGRM--TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAG 190
S+SP ++ A +PG +P SP +P SP SP Y S ++ L P+
Sbjct: 1703 SYSP---TSPAYSPTSPGYSPTSPSYSPT---SPSYSPTSPSYNPSSAKYSPSLAYSPSS 1756
Query: 191 G----AGAYAPASPAYMATSPGMG-----YSPSTPALAVSSP---GYSPGYSPTSPSVGA 334
+ Y+P SP Y TSP YSP++P + +SP G SP YSP+SP
Sbjct: 1757 PRLSPSSPYSPTSPNYSPTSPSYSPTSPSYSPASPTYSPTSPYNSGVSPDYSPSSPQYS- 1815
Query: 335 RGGPAAGYASPQSPGYVPTSPAYARP 412
P+AGY SP +PGY P+S + P
Sbjct: 1816 ---PSAGY-SPSAPGYSPSSTSQYTP 1837
Score = 56.2 bits (134), Expect = 1e-06
Identities = 40/114 (35%), Positives = 57/114 (50%), Gaps = 8/114 (7%)
Frame = +2
Query: 8 ATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPA 187
++A +SP ++ + ++ R +P SP +P SP SP Y+ SP
Sbjct: 1742 SSAKYSPSLAYSPSSPRLSPS------SPYSPTSPNYSPTSPSYSPTSP----------- 1784
Query: 188 GGAGAYAPASPAYMATSP-----GMGYSPSTPALAVSSPGYSP---GYSPTSPS 325
+Y+PASP Y TSP YSPS+P + S+ GYSP GYSP+S S
Sbjct: 1785 ----SYSPASPTYSPTSPYNSGVSPDYSPSSPQYSPSA-GYSPSAPGYSPSSTS 1833
[13][TOP]
>UniRef100_UPI0000E48671 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
(RPB1) isoform 3 n=1 Tax=Strongylocentrotus purpuratus
RepID=UPI0000E48671
Length = 1921
Score = 112 bits (280), Expect = 2e-23
Identities = 78/184 (42%), Positives = 103/184 (55%), Gaps = 15/184 (8%)
Frame = +2
Query: 14 ASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPA------SPGYAAMSPRFGGGLG 175
AS+SP+M S G PG +P S + F+P SPA SPG A SP
Sbjct: 1529 ASWSPMMGSGMTPGG--PG-FSPANSESTGFSPAYSPAWSPQPQSPGSPANSPYIPS--- 1582
Query: 176 GGPAGGAG-AYAPASPAYMATSPGM----GYSPSTPALAVSSPGYSPG---YSPTSPSVG 331
PAG +Y+PASP+Y+ SP GYSP++P+ + +SPGYSP YSPTSPS
Sbjct: 1583 --PAGPMSPSYSPASPSYLPASPATPQSPGYSPTSPSYSPTSPGYSPASPSYSPTSPSY- 1639
Query: 332 ARGGPAAGYASPQSPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAY 508
P + SP SP Y PTSP+Y+ + + YSP+SP+YSP SP+Y + +SP+Y
Sbjct: 1640 ---SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSY 1695
Query: 509 QPPS 520
P S
Sbjct: 1696 SPTS 1699
Score = 111 bits (278), Expect = 3e-23
Identities = 73/177 (41%), Positives = 95/177 (53%), Gaps = 7/177 (3%)
Frame = +2
Query: 11 TASFSPIMSSADAAGRATPGRMTPGR---SPAGRFTPRMSPASPGYAAMSPRFGGGLGGG 181
+ FSP S A + +PG SPAG +P SPASP Y SP G
Sbjct: 1553 STGFSPAYSPAWSPQPQSPGSPANSPYIPSPAGPMSPSYSPASPSYLPASPATPQSPG-- 1610
Query: 182 PAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAA 352
Y+P SP+Y TSPG YSP++P+ + +SP YSP YSPTSPS P +
Sbjct: 1611 -------YSPTSPSYSPTSPG--YSPASPSYSPTSPSYSPTSPSYSPTSPSYS----PTS 1657
Query: 353 GYASPQSPGYVPTSPAYARPGTVVAAANV-YSPSSPAYSPFSPNYAAASSPAYQPPS 520
SP SP Y PTSP+Y+ + + YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1658 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 1713
Score = 111 bits (278), Expect = 3e-23
Identities = 72/175 (41%), Positives = 98/175 (56%), Gaps = 7/175 (4%)
Frame = +2
Query: 17 SFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGA 196
S+SP S A ATP +PG SP +P SP SPGY+ SP + + +
Sbjct: 1590 SYSPASPSYLPASPATP--QSPGYSPT---SPSYSPTSPGYSPASPSYSP-TSPSYSPTS 1643
Query: 197 GAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARG---GPAAGY 358
+Y+P SP+Y TSP YSP++P+ + +SP YSP YSPTSPS P +
Sbjct: 1644 PSYSPTSPSYSPTSPS--YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1701
Query: 359 ASPQSPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
SP SP Y PTSP+Y+ + + YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1702 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 1755
Score = 102 bits (253), Expect = 2e-20
Identities = 63/152 (41%), Positives = 86/152 (56%), Gaps = 4/152 (2%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP +P SP SP Y+ SP + + + +Y+P SP+Y TSP YS
Sbjct: 1699 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 1745
Query: 257 PSTPALAVSSPGYSPG---YSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVA 427
P++P+ + +SP YSP YSPTSPS P + SPQSP Y P SP+Y+ +
Sbjct: 1746 PTSPSYSPTSPSYSPSSPKYSPTSPSY----SPTSPSYSPQSPSYSPGSPSYSPSSPKYS 1801
Query: 428 AAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
+ YSP+SP+YSP SPN+ + SSP Y P S
Sbjct: 1802 PTSPSYSPTSPSYSPTSPNF-SPSSPTYSPAS 1832
Score = 100 bits (249), Expect = 6e-20
Identities = 65/156 (41%), Positives = 87/156 (55%), Gaps = 8/156 (5%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP +P SP SP Y+ SP + + + +Y+P SP+Y TSP YS
Sbjct: 1706 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 1752
Query: 257 PSTPALAVSSPGYSP---GYSPTSPSVGARG---GPAAGYASPQSPGYVPTSPAYA--RP 412
P++P+ + SSP YSP YSPTSPS + P + SP SP Y PTSP+Y+ P
Sbjct: 1753 PTSPSYSPSSPKYSPTSPSYSPTSPSYSPQSPSYSPGSPSYSPSSPKYSPTSPSYSPTSP 1812
Query: 413 GTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
+ N +SPSSP YSP SP+Y + +SP Y P S
Sbjct: 1813 SYSPTSPN-FSPSSPTYSPASPSY-SPTSPKYSPSS 1846
Score = 99.4 bits (246), Expect = 1e-19
Identities = 63/154 (40%), Positives = 83/154 (53%), Gaps = 6/154 (3%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP +P SP SP Y+ SP++ + + +Y+P SP+Y SP YS
Sbjct: 1741 SPSYSPT---SPSYSPTSPSYSPSSPKY--------SPTSPSYSPTSPSYSPQSP--SYS 1787
Query: 257 PSTPALAVSSPGY---SPGYSPTSPSVGARG---GPAAGYASPQSPGYVPTSPAYARPGT 418
P +P+ + SSP Y SP YSPTSPS P++ SP SP Y PTSP Y+
Sbjct: 1788 PGSPSYSPSSPKYSPTSPSYSPTSPSYSPTSPNFSPSSPTYSPASPSYSPTSPKYS---- 1843
Query: 419 VVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
++ YSP+SP YSP SP Y+ A SP Y P S
Sbjct: 1844 --PSSPKYSPTSPTYSPTSPKYSPA-SPTYSPTS 1874
Score = 93.6 bits (231), Expect = 8e-18
Identities = 60/175 (34%), Positives = 84/175 (48%), Gaps = 17/175 (9%)
Frame = +2
Query: 23 SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGG--- 193
SP S + T +P +P SP SP Y+ SP + G
Sbjct: 1741 SPSYSPTSPSYSPTSPSYSPSSPKYSPTSPSYSPTSPSYSPQSPSYSPGSPSYSPSSPKY 1800
Query: 194 ---AGAYAPASPAYMATSPGMG-----YSPSTPALAVSSPGYSPG---YSPTSPS---VG 331
+ +Y+P SP+Y TSP YSP++P+ + +SP YSP YSPTSP+
Sbjct: 1801 SPTSPSYSPTSPSYSPTSPNFSPSSPTYSPASPSYSPTSPKYSPSSPKYSPTSPTYSPTS 1860
Query: 332 ARGGPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAAS 496
+ PA+ SP SP Y P+SP Y+ + YSP+SP+YSP SP+Y+ S
Sbjct: 1861 PKYSPASPTYSPTSPKYSPSSPTYSPTSP---KGSTYSPTSPSYSPTSPSYSPTS 1912
Score = 81.3 bits (199), Expect = 4e-14
Identities = 57/156 (36%), Positives = 76/156 (48%), Gaps = 12/156 (7%)
Frame = +2
Query: 89 SPAGRFTPRMSPASPGYAAM-----SPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGY 253
SP+ +P+M+P + G M SP G G+ G G + A + ++ A SP
Sbjct: 1507 SPSQSMSPQMTPWNQGATPMHGASWSPMMGSGMTPGGPGFSPANSESTGFSPAYSPAWSP 1566
Query: 254 SPSTPALAVSSP-------GYSPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARP 412
P +P +SP SP YSP SPS A A+PQSPGY PTSP+Y
Sbjct: 1567 QPQSPGSPANSPYIPSPAGPMSPSYSPASPSY-----LPASPATPQSPGYSPTSPSY--- 1618
Query: 413 GTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
SP+SP YSP SP+Y + +SP+Y P S
Sbjct: 1619 ----------SPTSPGYSPASPSY-SPTSPSYSPTS 1643
Score = 74.7 bits (182), Expect = 4e-12
Identities = 46/110 (41%), Positives = 61/110 (55%), Gaps = 3/110 (2%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP+ +P SPASP Y+ SP++ + + Y+P SP Y TSP YS
Sbjct: 1818 SPNFSPS---SPTYSPASPSYSPTSPKY--------SPSSPKYSPTSPTYSPTSPK--YS 1864
Query: 257 PSTPALAVSSPGYSPG---YSPTSPSVGARGGPAAGYASPQSPGYVPTSP 397
P++P + +SP YSP YSPTSP G+ P + SP SP Y PTSP
Sbjct: 1865 PASPTYSPTSPKYSPSSPTYSPTSPK-GSTYSPTSPSYSPTSPSYSPTSP 1913
Score = 57.4 bits (137), Expect = 6e-07
Identities = 36/104 (34%), Positives = 52/104 (50%), Gaps = 1/104 (0%)
Frame = +2
Query: 23 SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
SP S A + T + +P +P SP SP Y+ SP + + +
Sbjct: 1825 SPTYSPASPSYSPTSPKYSPSSPKYSPTSPTYSPTSPKYSPASPTY--------SPTSPK 1876
Query: 203 YAPASPAYMATSP-GMGYSPSTPALAVSSPGYSPGYSPTSPSVG 331
Y+P+SP Y TSP G YSP++P+ + +SP YSP TSP +G
Sbjct: 1877 YSPSSPTYSPTSPKGSTYSPTSPSYSPTSPSYSP----TSPGMG 1916
[14][TOP]
>UniRef100_UPI00005A0B2A PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
(RPB1) isoform 21 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B2A
Length = 1896
Score = 112 bits (280), Expect = 2e-23
Identities = 76/180 (42%), Positives = 98/180 (54%), Gaps = 11/180 (6%)
Frame = +2
Query: 14 ASFSPIMSSADAAGRATPGRM-----TPGR--SPAGRFTPRMSPASPGYAAMSPRFGGGL 172
A FSP S+A A +PG TPG SP G +P SP SP Y SP
Sbjct: 1543 AGFSP--SAASDASGFSPGYSPAWSPTPGSPGSPGGAMSPSYSPTSPAYEPRSP------ 1594
Query: 173 GGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPSVGARGG 343
GG + +Y+P SP+Y TSP YSP++P + +SP Y SP YSPTSPS
Sbjct: 1595 -GGYTPQSPSYSPTSPSYSPTSP--SYSPTSPNYSPTSPSYSPTSPSYSPTSPSY----S 1647
Query: 344 PAAGYASPQSPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
P + SP SP Y PTSP+Y+ + + YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1648 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 1706
Score = 105 bits (262), Expect = 2e-21
Identities = 68/181 (37%), Positives = 96/181 (53%), Gaps = 13/181 (7%)
Frame = +2
Query: 17 SFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGA 196
S+SP ++ A +PG TP +P SP SP Y+ SP + + +
Sbjct: 1581 SYSP---TSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNYSP-TSPSYSPTS 1636
Query: 197 GAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARG---GPAAGY 358
+Y+P SP+Y TSP YSP++P+ + +SP YSP YSPTSPS P +
Sbjct: 1637 PSYSPTSPSYSPTSPS--YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1694
Query: 359 ASPQSPGYVPTSPAYARPGTVVAAANV-YSPSSPAYSPFSPNYAAA------SSPAYQPP 517
SP SP Y PTSP+Y+ + + YSP+SP+YSP SPNY+ + +SP+Y P
Sbjct: 1695 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPSRPNYTPTSPSYSPT 1754
Query: 518 S 520
S
Sbjct: 1755 S 1755
Score = 103 bits (256), Expect = 1e-20
Identities = 77/205 (37%), Positives = 100/205 (48%), Gaps = 41/205 (20%)
Frame = +2
Query: 29 IMSSADAAGRATPGRMTPGR--SPAGRFTPRMSP----ASPGYAAMSPRFG---GGLG-- 175
I ++ G A P M G SP G +P M+P A+P Y A SPR G G G
Sbjct: 1487 IPTNIPGLGAAGPTGMFFGSAPSPMGGISPAMTPWNQGATPAYGAWSPRSGMTPGAAGFS 1546
Query: 176 ----------------------GGPAGGAGA----YAPASPAYMATSPGMGYSPSTPALA 277
G P GA Y+P SPAY SPG GY+P +P+ +
Sbjct: 1547 PSAASDASGFSPGYSPAWSPTPGSPGSPGGAMSPSYSPTSPAYEPRSPG-GYTPQSPSYS 1605
Query: 278 VSSPGY---SPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVAAAN-VYS 445
+SP Y SP YSPTSP+ P + SP SP Y PTSP+Y+ + + YS
Sbjct: 1606 PTSPSYSPTSPSYSPTSPNY----SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1661
Query: 446 PSSPAYSPFSPNYAAASSPAYQPPS 520
P+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1662 PTSPSYSPTSPSY-SPTSPSYSPTS 1685
Score = 99.4 bits (246), Expect = 1e-19
Identities = 64/159 (40%), Positives = 88/159 (55%), Gaps = 11/159 (6%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP +P SP SP Y+ SP + + + +Y+P SP+Y TSP YS
Sbjct: 1636 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 1682
Query: 257 PSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYA--RPGTV 421
P++P+ + +SP YSP YSPTSPS P + SP SP Y PTSP+Y+ P
Sbjct: 1683 PTSPSYSPTSPSYSPTSPSYSPTSPSYS----PTSPSYSPTSPSYSPTSPSYSPTSPNYS 1738
Query: 422 VAAANVYSPSSPAYSPFSPNYAAAS------SPAYQPPS 520
+ N Y+P+SP+YSP SP+Y+ S SP+Y P S
Sbjct: 1739 PSRPN-YTPTSPSYSPTSPSYSPTSPKYTPTSPSYSPSS 1776
Score = 94.0 bits (232), Expect = 6e-18
Identities = 64/178 (35%), Positives = 85/178 (47%), Gaps = 12/178 (6%)
Frame = +2
Query: 23 SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
SP S + T +P R +P SP SP Y+ SP++ + +
Sbjct: 1720 SPSYSPTSPSYSPTSPNYSPSRPNYTPTSPSYSPTSPSYSPTSPKY--------TPTSPS 1771
Query: 203 YAPASPAYMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYASPQS 373
Y+P+SP Y TSP YSP++P + +SP Y SP YSPT+P + P + SP S
Sbjct: 1772 YSPSSPEYTPTSP--KYSPTSPKYSPTSPKYSPTSPTYSPTTP----KYSPTSPTYSPTS 1825
Query: 374 PGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAAS---------SPAYQPPS 520
P Y PTSP Y+ + YSP+SP YSP SP Y+ S SP Y P S
Sbjct: 1826 PVYTPTSPKYS------PTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTS 1877
Score = 91.7 bits (226), Expect = 3e-17
Identities = 62/167 (37%), Positives = 80/167 (47%), Gaps = 3/167 (1%)
Frame = +2
Query: 23 SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
SP S + T + TP +P +P SP Y+ SP+
Sbjct: 1748 SPSYSPTSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYSPTSPK--------------- 1792
Query: 203 YAPASPAYMATSPGMGYSPSTPALAVSSPGYSPG---YSPTSPSVGARGGPAAGYASPQS 373
Y+P SP Y TSP YSP+TP + +SP YSP Y+PTSP + P + SP S
Sbjct: 1793 YSPTSPKYSPTSPT--YSPTTPKYSPTSPTYSPTSPVYTPTSP----KYSPTSPTYSPTS 1846
Query: 374 PGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQP 514
P Y PTSP Y+ + YSP+SP YSP SP Y + +SPA P
Sbjct: 1847 PKYSPTSPTYS---PTSPKGSTYSPTSPGYSPTSPTY-SLTSPAISP 1889
[15][TOP]
>UniRef100_UPI00003BD271 hypothetical protein DEHA0A14036g n=1 Tax=Debaryomyces hansenii
CBS767 RepID=UPI00003BD271
Length = 1749
Score = 112 bits (280), Expect = 2e-23
Identities = 75/176 (42%), Positives = 99/176 (56%), Gaps = 7/176 (3%)
Frame = +2
Query: 14 ASFSPIMSS--ADAAGRATPGRMTPGRSPAGRFTPRMSPASP-GYAAMSPRFGGGLGGGP 184
A FSPI ++ +D +G T S G +P SP SP Y A SP FGG G
Sbjct: 1502 AGFSPIHTAPVSDGSGALT--------SYGGATSP--SPTSPFSYGATSPSFGGVTSPGY 1551
Query: 185 AGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAG 355
G + Y+P SP+Y TSP YSP++P+ + +SP Y SP YSPTSPS P +
Sbjct: 1552 GGTSPTYSPTSPSYSPTSP--SYSPTSPSYSPTSPSYSPTSPSYSPTSPSY----SPTSP 1605
Query: 356 YASPQSPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
SP SP Y PTSP+Y+ + + YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1606 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 1660
Score = 100 bits (249), Expect = 6e-20
Identities = 62/152 (40%), Positives = 86/152 (56%), Gaps = 4/152 (2%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP +P SP SP Y+ SP + + + +Y+P SP+Y TSP YS
Sbjct: 1583 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 1629
Query: 257 PSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVA 427
P++P+ + +SP YSP YSPTSPS P + SP SP Y PTSP+Y+ +
Sbjct: 1630 PTSPSYSPTSPSYSPTSPSYSPTSPSYS----PTSPSYSPTSPSYSPTSPSYSPTSPQYS 1685
Query: 428 AANV-YSPSSPAYSPFSPNYAAASSPAYQPPS 520
+ YSP+SP+YSP SP+Y + +SP Y P S
Sbjct: 1686 PTSPQYSPTSPSYSPTSPSY-SPTSPQYSPTS 1716
Score = 98.2 bits (243), Expect = 3e-19
Identities = 62/151 (41%), Positives = 83/151 (54%), Gaps = 3/151 (1%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP +P SP SP Y+ SP + + + +Y+P SP+Y TSP YS
Sbjct: 1604 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 1650
Query: 257 PSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVA 427
P++P+ + +SP YSP YSPTSPS P + SP SP Y PTSP+Y+
Sbjct: 1651 PTSPSYSPTSPSYSPTSPSYSPTSPSYS----PTSPQYSPTSPQYSPTSPSYS------P 1700
Query: 428 AANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
+ YSP+SP YSP SP Y + +SP Y P S
Sbjct: 1701 TSPSYSPTSPQYSPTSPQY-SPTSPQYSPGS 1730
Score = 74.3 bits (181), Expect = 5e-12
Identities = 52/136 (38%), Positives = 65/136 (47%), Gaps = 3/136 (2%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP +P SP SP Y+ SP + + + +Y+P SP+Y TSP YS
Sbjct: 1639 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPQ--YS 1685
Query: 257 PSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVA 427
P++P + +SP YSP YSPTSP SP SP Y PTSP
Sbjct: 1686 PTSPQYSPTSPSYSPTSPSYSPTSPQY-----------SPTSPQYSPTSPQ--------- 1725
Query: 428 AANVYSPSSPAYSPFS 475
YSP SP YSP S
Sbjct: 1726 ----YSPGSPLYSPES 1737
Score = 70.9 bits (172), Expect = 5e-11
Identities = 45/116 (38%), Positives = 60/116 (51%), Gaps = 6/116 (5%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP +P SP SP Y+ SP + + + +Y+P SP+Y TSP YS
Sbjct: 1632 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 1678
Query: 257 PSTPALAVSSPGYSP---GYSPTSPSVGARG---GPAAGYASPQSPGYVPTSPAYA 406
P++P + +SP YSP YSPTSPS P + SP SP Y P SP Y+
Sbjct: 1679 PTSPQYSPTSPQYSPTSPSYSPTSPSYSPTSPQYSPTSPQYSPTSPQYSPGSPLYS 1734
Score = 54.3 bits (129), Expect = 5e-06
Identities = 34/86 (39%), Positives = 48/86 (55%), Gaps = 3/86 (3%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP +P SP SP Y+ SP++ + + +Y+P SP+Y TSP YS
Sbjct: 1667 SPSYSPT---SPSYSPTSPQYSPTSPQY--------SPTSPSYSPTSPSYSPTSPQ--YS 1713
Query: 257 PSTPALAVSSPGYSPG---YSPTSPS 325
P++P + +SP YSPG YSP S S
Sbjct: 1714 PTSPQYSPTSPQYSPGSPLYSPESES 1739
[16][TOP]
>UniRef100_B7G9I2 DNA-directed RNA polymerase (Fragment) n=1 Tax=Phaeodactylum
tricornutum CCAP 1055/1 RepID=B7G9I2_PHATR
Length = 1706
Score = 112 bits (280), Expect = 2e-23
Identities = 79/178 (44%), Positives = 96/178 (53%), Gaps = 9/178 (5%)
Frame = +2
Query: 14 ASFSPIMS--SADAAGRATPGRMTPGRSPAGRFT-PRMSPASPGYAAMSPRFGGGLGGGP 184
ASFSP S S G G SPA T P+ SP SP Y+ SP + P
Sbjct: 1487 ASFSPAYSPDSGSYGSGFASGSYGAGDSPAYSPTSPQYSPTSPAYSPTSPAYSPT---SP 1543
Query: 185 AGG--AGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPA 349
A + AY+P SPAY TSP YSP++PA + +SP YSP YSPTSP+ P
Sbjct: 1544 AYSPTSPAYSPTSPAYSPTSPA--YSPTSPAYSPTSPAYSPTSPAYSPTSPAYS----PT 1597
Query: 350 AGYASPQSPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
+ SP SP Y PTSPAY+ + + YSP+SPAYSP SP Y + +SPAY P S
Sbjct: 1598 SPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAY-SPTSPAYSPTS 1654
Score = 109 bits (273), Expect = 1e-22
Identities = 76/189 (40%), Positives = 95/189 (50%), Gaps = 26/189 (13%)
Frame = +2
Query: 32 MSSADAAGRATPGRMTP-----------GRSP----AGRFTPRMSPAS--PGYAAMSPRF 160
M+ G ATP TP SP F+P + AS P Y+ S +
Sbjct: 1441 MAGVGGVGGATPYATTPFAASPMVGDGAAASPFVDGGAAFSPAVGAASFSPAYSPDSGSY 1500
Query: 161 GGGLGGGP--AGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPS 325
G G G AG + AY+P SP Y TSP YSP++PA + +SP YSP YSPTSP+
Sbjct: 1501 GSGFASGSYGAGDSPAYSPTSPQYSPTSPA--YSPTSPAYSPTSPAYSPTSPAYSPTSPA 1558
Query: 326 VGARG---GPAAGYASPQSPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAA 493
P + SP SP Y PTSPAY+ + + YSP+SPAYSP SP Y +
Sbjct: 1559 YSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAY-SP 1617
Query: 494 SSPAYQPPS 520
+SPAY P S
Sbjct: 1618 TSPAYSPTS 1626
Score = 108 bits (271), Expect = 2e-22
Identities = 70/170 (41%), Positives = 89/170 (52%), Gaps = 4/170 (2%)
Frame = +2
Query: 23 SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
SP S A T +P +P SP SP Y+ SP + + + A
Sbjct: 1528 SPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAY--------SPTSPA 1579
Query: 203 YAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQS 373
Y+P SPAY TSP YSP++PA + +SP YSP YSPTSP+ P + SP S
Sbjct: 1580 YSPTSPAYSPTSPA--YSPTSPAYSPTSPAYSPTSPAYSPTSPAYS----PTSPAYSPTS 1633
Query: 374 PGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
P Y PTSPAY+ + + YSP+SPAYSP SP Y + +SPAY P S
Sbjct: 1634 PAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAY-SPTSPAYSPTS 1682
Score = 107 bits (268), Expect = 4e-22
Identities = 69/168 (41%), Positives = 88/168 (52%), Gaps = 4/168 (2%)
Frame = +2
Query: 23 SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
SP S A T +P +P SP SP Y+ SP + + + A
Sbjct: 1542 SPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAY--------SPTSPA 1593
Query: 203 YAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQS 373
Y+P SPAY TSP YSP++PA + +SP YSP YSPTSP+ P + SP S
Sbjct: 1594 YSPTSPAYSPTSPA--YSPTSPAYSPTSPAYSPTSPAYSPTSPAYS----PTSPAYSPTS 1647
Query: 374 PGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQP 514
P Y PTSPAY+ + + YSP+SPAYSP SP Y + +SPAY P
Sbjct: 1648 PAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAY-SPTSPAYSP 1694
Score = 82.8 bits (203), Expect = 1e-14
Identities = 53/134 (39%), Positives = 67/134 (50%), Gaps = 3/134 (2%)
Frame = +2
Query: 23 SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
SP S A T +P +P SP SP Y+ SP + + + A
Sbjct: 1577 SPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAY--------SPTSPA 1628
Query: 203 YAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQS 373
Y+P SPAY TSP YSP++PA + +SP YSP YSPTSP+ P + SP S
Sbjct: 1629 YSPTSPAYSPTSPA--YSPTSPAYSPTSPAYSPTSPAYSPTSPAYS----PTSPAYSPTS 1682
Query: 374 PGYVPTSPAYARPG 415
P Y PTSPAY+ G
Sbjct: 1683 PAYSPTSPAYSPSG 1696
Score = 75.9 bits (185), Expect = 2e-12
Identities = 56/133 (42%), Positives = 65/133 (48%), Gaps = 16/133 (12%)
Frame = +2
Query: 170 LGGGPAGGAGAYAPASPAYMATSP----GMGYSPSTPALAVSSP-----GYSPGYSPTSP 322
LG GG G P + A SP G SP A SP +SP YSP S
Sbjct: 1439 LGMAGVGGVGGATPYATTPFAASPMVGDGAAASPFVDGGAAFSPAVGAASFSPAYSPDSG 1498
Query: 323 SVG---ARGGPAAGYA---SPQSPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPN 481
S G A G AG + SP SP Y PTSPAY+ + + YSP+SPAYSP SP
Sbjct: 1499 SYGSGFASGSYGAGDSPAYSPTSPQYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPA 1558
Query: 482 YAAASSPAYQPPS 520
Y + +SPAY P S
Sbjct: 1559 Y-SPTSPAYSPTS 1570
Score = 59.7 bits (143), Expect = 1e-07
Identities = 39/107 (36%), Positives = 51/107 (47%)
Frame = +2
Query: 23 SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
SP S A T +P +P SP SP Y+ SP + + + A
Sbjct: 1605 SPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAY--------SPTSPA 1656
Query: 203 YAPASPAYMATSPGMGYSPSTPALAVSSPGYSPGYSPTSPSVGARGG 343
Y+P SPAY TSP YSP++PA + + SP YSPTSP+ GG
Sbjct: 1657 YSPTSPAYSPTSPA--YSPTSPAYSPT----SPAYSPTSPAYSPSGG 1697
[17][TOP]
>UniRef100_A8PU11 DNA-directed RNA polymerase n=1 Tax=Brugia malayi RepID=A8PU11_BRUMA
Length = 1943
Score = 112 bits (280), Expect = 2e-23
Identities = 78/176 (44%), Positives = 91/176 (51%), Gaps = 20/176 (11%)
Frame = +2
Query: 59 ATPGRMTPGR---SPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPA----- 214
AT MTPG SP+G SP G + GG LGG GAGAY+PA
Sbjct: 1597 ATGSGMTPGGAGFSPSGHSEGGFSPYGGGGSWSPGSPGGSLGGMSPSGAGAYSPAASDYG 1656
Query: 215 -------SPAYMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYAS 364
SP Y TSP Y S+PA V SP Y SP YSPTSPS P + S
Sbjct: 1657 SGLEGLSSPGYSPTSPASPYGASSPAYGVMSPRYSPTSPSYSPTSPSY----SPTSPSYS 1712
Query: 365 PQSPGYVPTSPAYA--RPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPSRR 526
P SP Y PTSP+Y+ PG + + YSP+SP+YSP SP+Y+ A SP Y P S R
Sbjct: 1713 PTSPSYSPTSPSYSPTSPGYSPTSPS-YSPTSPSYSPTSPSYSPA-SPGYSPSSPR 1766
Score = 111 bits (278), Expect = 3e-23
Identities = 74/188 (39%), Positives = 98/188 (52%), Gaps = 14/188 (7%)
Frame = +2
Query: 5 NATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGP 184
+ ++SP +A G G +PG SP +P +SP Y MSPR+
Sbjct: 1643 SGAGAYSP---AASDYGSGLEGLSSPGYSPTSPASP-YGASSPAYGVMSPRY-------- 1690
Query: 185 AGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARG----- 340
+ + +Y+P SP+Y TSP YSP++P+ + +SP YSP GYSPTSPS
Sbjct: 1691 SPTSPSYSPTSPSYSPTSPS--YSPTSPSYSPTSPSYSPTSPGYSPTSPSYSPTSPSYSP 1748
Query: 341 -----GPAAGYASPQSPGYVPTSPAYARPG-TVVAAANVYSPSSPAYSPFSPNYAAASSP 502
PA+ SP SP Y PTSPAY+ T + YSP+SP YSP SP+Y+ A SP
Sbjct: 1749 TSPSYSPASPGYSPSSPRYSPTSPAYSPTSPTYSPTSPAYSPTSPTYSPTSPSYSPA-SP 1807
Query: 503 AYQPPSRR 526
Y P S R
Sbjct: 1808 GYSPSSPR 1815
Score = 110 bits (274), Expect = 8e-23
Identities = 69/156 (44%), Positives = 87/156 (55%), Gaps = 8/156 (5%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGG--AGAYAPASPAYMATSPGMG 250
+P SP +P SPASPGY+ SPR+ PA + Y+P SPAY TSP
Sbjct: 1743 SPSYSPT---SPSYSPASPGYSPSSPRYSPT---SPAYSPTSPTYSPTSPAYSPTSPT-- 1794
Query: 251 YSPSTPALAVSSPGYSPG---YSPTSPSVGARG---GPAAGYASPQSPGYVPTSPAYARP 412
YSP++P+ + +SPGYSP YSPTSP+ P++ SP SP Y P+SP Y
Sbjct: 1795 YSPTSPSYSPASPGYSPSSPRYSPTSPTYSPTSPAYSPSSPQYSPSSPQYSPSSPQYTPS 1854
Query: 413 GTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
A+ YSP+SP YSP SP Y + SSP Y P S
Sbjct: 1855 SPAGDASPAYSPTSPQYSPSSPRY-SPSSPQYSPTS 1889
Score = 103 bits (258), Expect = 6e-21
Identities = 71/175 (40%), Positives = 86/175 (49%), Gaps = 9/175 (5%)
Frame = +2
Query: 23 SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
SP S T +P +P SPASPGY+ SPR+ + +
Sbjct: 1771 SPAYSPTSPTYSPTSPAYSPTSPTYSPTSPSYSPASPGYSPSSPRY--------SPTSPT 1822
Query: 203 YAPASPAYMATSPGMGYSPSTPALAVSSPGY---------SPGYSPTSPSVGARGGPAAG 355
Y+P SPAY +SP YSPS+P + SSP Y SP YSPTSP P++
Sbjct: 1823 YSPTSPAYSPSSP--QYSPSSPQYSPSSPQYTPSSPAGDASPAYSPTSPQY----SPSSP 1876
Query: 356 YASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
SP SP Y PTSP Y+ P + A YS SSP YSP SP Y + SSP Y P S
Sbjct: 1877 RYSPSSPQYSPTSPQYS-PSSPGGAGTSYSRSSPQYSPSSPQY-SPSSPQYSPSS 1929
Score = 87.4 bits (215), Expect = 5e-16
Identities = 65/149 (43%), Positives = 79/149 (53%), Gaps = 3/149 (2%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP+ +P+ SP+SP Y+ SP++ P+ AG ASPAY TSP YS
Sbjct: 1827 SPAYSPS---SPQYSPSSPQYSPSSPQYT------PSSPAG---DASPAYSPTSPQ--YS 1872
Query: 257 PSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVA 427
PS+P + SSP Y SP YSP+SP GG Y S SP Y P+SP
Sbjct: 1873 PSSPRYSPSSPQYSPTSPQYSPSSP-----GGAGTSY-SRSSPQYSPSSPQ--------- 1917
Query: 428 AANVYSPSSPAYSPFSPNYAAASSPAYQP 514
YSPSSP YSP SP Y + SSP Y P
Sbjct: 1918 ----YSPSSPQYSPSSPQY-SPSSPQYSP 1941
Score = 66.6 bits (161), Expect = 1e-09
Identities = 53/139 (38%), Positives = 66/139 (47%), Gaps = 8/139 (5%)
Frame = +2
Query: 23 SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
SP S + + + TP SPAG +P SP SP Y+ SPR
Sbjct: 1834 SPQYSPSSPQYSPSSPQYTPS-SPAGDASPAYSPTSPQYSPSSPR--------------- 1877
Query: 203 YAPASPAYMATSPGMGYSPSTP-----ALAVSSPGYSPG---YSPTSPSVGARGGPAAGY 358
Y+P+SP Y TSP YSPS+P + + SSP YSP YSP+SP
Sbjct: 1878 YSPSSPQYSPTSPQ--YSPSSPGGAGTSYSRSSPQYSPSSPQYSPSSPQY---------- 1925
Query: 359 ASPQSPGYVPTSPAYARPG 415
SP SP Y P+SP Y+ PG
Sbjct: 1926 -SPSSPQYSPSSPQYS-PG 1942
[18][TOP]
>UniRef100_B5RSM9 DNA-directed RNA polymerase n=1 Tax=Debaryomyces hansenii
RepID=B5RSM9_DEBHA
Length = 1749
Score = 112 bits (280), Expect = 2e-23
Identities = 75/176 (42%), Positives = 99/176 (56%), Gaps = 7/176 (3%)
Frame = +2
Query: 14 ASFSPIMSS--ADAAGRATPGRMTPGRSPAGRFTPRMSPASP-GYAAMSPRFGGGLGGGP 184
A FSPI ++ +D +G T S G +P SP SP Y A SP FGG G
Sbjct: 1502 AGFSPIHTAPVSDGSGALT--------SYGGATSP--SPTSPFSYGATSPSFGGVTSPGY 1551
Query: 185 AGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAG 355
G + Y+P SP+Y TSP YSP++P+ + +SP Y SP YSPTSPS P +
Sbjct: 1552 GGTSPTYSPTSPSYSPTSP--SYSPTSPSYSPTSPSYSPTSPSYSPTSPSY----SPTSP 1605
Query: 356 YASPQSPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
SP SP Y PTSP+Y+ + + YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1606 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 1660
Score = 100 bits (249), Expect = 6e-20
Identities = 62/152 (40%), Positives = 86/152 (56%), Gaps = 4/152 (2%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP +P SP SP Y+ SP + + + +Y+P SP+Y TSP YS
Sbjct: 1583 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 1629
Query: 257 PSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVA 427
P++P+ + +SP YSP YSPTSPS P + SP SP Y PTSP+Y+ +
Sbjct: 1630 PTSPSYSPTSPSYSPTSPSYSPTSPSYS----PTSPSYSPTSPSYSPTSPSYSPTSPQYS 1685
Query: 428 AANV-YSPSSPAYSPFSPNYAAASSPAYQPPS 520
+ YSP+SP+YSP SP+Y + +SP Y P S
Sbjct: 1686 PTSPQYSPTSPSYSPTSPSY-SPTSPQYSPTS 1716
Score = 98.6 bits (244), Expect = 2e-19
Identities = 63/157 (40%), Positives = 84/157 (53%), Gaps = 9/157 (5%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP +P SP SP Y+ SP + + + +Y+P SP+Y TSP YS
Sbjct: 1604 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 1650
Query: 257 PSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVA 427
P++P+ + +SP YSP YSPTSPS P + SP SP Y PTSP+Y+
Sbjct: 1651 PTSPSYSPTSPSYSPTSPSYSPTSPSYS----PTSPQYSPTSPQYSPTSPSYS------P 1700
Query: 428 AANVYSPSSPAYSPFSPNYAAAS------SPAYQPPS 520
+ YSP+SP YSP SP Y+ S SP+Y P S
Sbjct: 1701 TSPSYSPTSPQYSPTSPQYSPTSPQYSPGSPSYSPES 1737
Score = 54.3 bits (129), Expect = 5e-06
Identities = 34/86 (39%), Positives = 48/86 (55%), Gaps = 3/86 (3%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP +P SP SP Y+ SP++ + + +Y+P SP+Y TSP YS
Sbjct: 1667 SPSYSPT---SPSYSPTSPQYSPTSPQY--------SPTSPSYSPTSPSYSPTSP--QYS 1713
Query: 257 PSTPALAVSSPGYSPG---YSPTSPS 325
P++P + +SP YSPG YSP S S
Sbjct: 1714 PTSPQYSPTSPQYSPGSPSYSPESES 1739
[19][TOP]
>UniRef100_C4YN85 DNA-directed RNA polymerase n=1 Tax=Candida albicans
RepID=C4YN85_CANAL
Length = 1742
Score = 112 bits (279), Expect = 2e-23
Identities = 75/174 (43%), Positives = 97/174 (55%), Gaps = 3/174 (1%)
Frame = +2
Query: 8 ATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPA 187
AT+ FS +S + G +PG G SP +P SP SP YA SP + A
Sbjct: 1520 ATSPFSYGYNSITSPGYTSPGY---GYSPT---SPSYSPTSPSYAPTSPAYSP-TSPSYA 1572
Query: 188 GGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGY 358
+ AY+P SP+Y TSP YSP++P+ A +SP YSP YSPTSPS P +
Sbjct: 1573 PTSPAYSPTSPSYAPTSPA--YSPTSPSYAPTSPAYSPTSPAYSPTSPSYS----PTSPQ 1626
Query: 359 ASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
SP SP Y PTSP+Y+ + YSP+SPAYSP SP+Y + +SP+Y P S
Sbjct: 1627 YSPTSPSYSPTSPSYS------PTSPSYSPTSPAYSPTSPSY-SPTSPSYSPTS 1673
Score = 102 bits (254), Expect = 2e-20
Identities = 68/173 (39%), Positives = 86/173 (49%), Gaps = 7/173 (4%)
Frame = +2
Query: 23 SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
SP S + T +P +P SP SP YA SP + A + A
Sbjct: 1547 SPSYSPTSPSYAPTSPAYSPTSPSYAPTSPAYSPTSPSYAPTSPAYSP-TSPSYAPTSPA 1605
Query: 203 YAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARG---GPAAGYAS 364
Y+P SPAY TSP YSP++P + +SP YSP YSPTSPS P + S
Sbjct: 1606 YSPTSPAYSPTSPS--YSPTSPQYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPSYS 1663
Query: 365 PQSPGYVPTSPAYARPGTVVAAANV-YSPSSPAYSPFSPNYAAASSPAYQPPS 520
P SP Y PTSP Y+ + + YSP+SP+YSP SP Y + +SP Y P S
Sbjct: 1664 PTSPSYSPTSPQYSPTSPSYSPTSPQYSPTSPSYSPTSPQY-SPTSPQYSPTS 1715
Score = 98.6 bits (244), Expect = 2e-19
Identities = 61/150 (40%), Positives = 83/150 (55%), Gaps = 4/150 (2%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP +P SP SP Y+ SP++ + + +Y+P SP+Y TSP YS
Sbjct: 1603 SPAYSPT---SPAYSPTSPSYSPTSPQY--------SPTSPSYSPTSPSYSPTSPS--YS 1649
Query: 257 PSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVA 427
P++PA + +SP YSP YSPTSP P + SP SP Y PTSP+Y+ +
Sbjct: 1650 PTSPAYSPTSPSYSPTSPSYSPTSPQYS----PTSPSYSPTSPQYSPTSPSYSPTSPQYS 1705
Query: 428 AANV-YSPSSPAYSPFSPNYAAASSPAYQP 514
+ YSP+SP YSP SP Y + SP Y+P
Sbjct: 1706 PTSPQYSPTSPQYSPTSPQY-SPGSPGYEP 1734
Score = 95.1 bits (235), Expect = 3e-18
Identities = 71/181 (39%), Positives = 90/181 (49%), Gaps = 8/181 (4%)
Frame = +2
Query: 2 INATASFSPI----MSSADAAGRATPGRMTPGRSPAGRFTPRM-SPASPGYAAMSPRFGG 166
I+A A FSPI M+ + G + G + F+ S SPGY SP +G
Sbjct: 1486 IDAGAGFSPIHIAQMNEGNIGGLTSYGGQPTSPAATSPFSYGYNSITSPGYT--SPGYG- 1542
Query: 167 GLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPSVGAR 337
Y+P SP+Y TSP Y+P++PA + +SP Y SP YSPTSPS
Sbjct: 1543 ------------YSPTSPSYSPTSPS--YAPTSPAYSPTSPSYAPTSPAYSPTSPSYA-- 1586
Query: 338 GGPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPP 517
P + SP SP Y PTSPAY SP+SPAYSP SP+Y + +SP Y P
Sbjct: 1587 --PTSPAYSPTSPSYAPTSPAY-------------SPTSPAYSPTSPSY-SPTSPQYSPT 1630
Query: 518 S 520
S
Sbjct: 1631 S 1631
Score = 86.7 bits (213), Expect = 9e-16
Identities = 59/158 (37%), Positives = 74/158 (46%), Gaps = 3/158 (1%)
Frame = +2
Query: 14 ASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGG 193
A SP S A T +P +P SP SP Y+ SP + +
Sbjct: 1600 APTSPAYSPTSPAYSPTSPSYSPTSPQYSPTSPSYSPTSPSYSPTSPSY--------SPT 1651
Query: 194 AGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSPG---YSPTSPSVGARGGPAAGYAS 364
+ AY+P SP+Y TSP YSP++P + +SP YSP YSPTSPS P + S
Sbjct: 1652 SPAYSPTSPSYSPTSPS--YSPTSPQYSPTSPSYSPTSPQYSPTSPSYS----PTSPQYS 1705
Query: 365 PQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSP 478
P SP Y PTSP Y+ + YSP SP Y P P
Sbjct: 1706 PTSPQYSPTSPQYS------PTSPQYSPGSPGYEPEPP 1737
[20][TOP]
>UniRef100_UPI0000E48672 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
(RPB1) isoform 2 n=1 Tax=Strongylocentrotus purpuratus
RepID=UPI0000E48672
Length = 1913
Score = 111 bits (278), Expect = 3e-23
Identities = 73/177 (41%), Positives = 95/177 (53%), Gaps = 7/177 (3%)
Frame = +2
Query: 11 TASFSPIMSSADAAGRATPGRMTPGR---SPAGRFTPRMSPASPGYAAMSPRFGGGLGGG 181
+ FSP S A + +PG SPAG +P SPASP Y SP G
Sbjct: 1545 STGFSPAYSPAWSPQPQSPGSPANSPYIPSPAGPMSPSYSPASPSYLPASPATPQSPG-- 1602
Query: 182 PAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAA 352
Y+P SP+Y TSPG YSP++P+ + +SP YSP YSPTSPS P +
Sbjct: 1603 -------YSPTSPSYSPTSPG--YSPASPSYSPTSPSYSPTSPSYSPTSPSYS----PTS 1649
Query: 353 GYASPQSPGYVPTSPAYARPGTVVAAANV-YSPSSPAYSPFSPNYAAASSPAYQPPS 520
SP SP Y PTSP+Y+ + + YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1650 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 1705
Score = 111 bits (278), Expect = 3e-23
Identities = 72/175 (41%), Positives = 98/175 (56%), Gaps = 7/175 (4%)
Frame = +2
Query: 17 SFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGA 196
S+SP S A ATP +PG SP +P SP SPGY+ SP + + +
Sbjct: 1582 SYSPASPSYLPASPATP--QSPGYSPT---SPSYSPTSPGYSPASPSYSP-TSPSYSPTS 1635
Query: 197 GAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARG---GPAAGY 358
+Y+P SP+Y TSP YSP++P+ + +SP YSP YSPTSPS P +
Sbjct: 1636 PSYSPTSPSYSPTSPS--YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1693
Query: 359 ASPQSPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
SP SP Y PTSP+Y+ + + YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1694 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 1747
Score = 107 bits (266), Expect = 7e-22
Identities = 75/172 (43%), Positives = 96/172 (55%), Gaps = 19/172 (11%)
Frame = +2
Query: 62 TPGRMTPGRSPAGR----FTPRMSPA------SPGYAAMSPRFGGGLGGGPAGGAG-AYA 208
TPG PG SPA F+P SPA SPG A SP PAG +Y+
Sbjct: 1532 TPGG--PGFSPANSESTGFSPAYSPAWSPQPQSPGSPANSPYIPS-----PAGPMSPSYS 1584
Query: 209 PASPAYMATSPGM----GYSPSTPALAVSSPGYSPG---YSPTSPSVGARGGPAAGYASP 367
PASP+Y+ SP GYSP++P+ + +SPGYSP YSPTSPS P + SP
Sbjct: 1585 PASPSYLPASPATPQSPGYSPTSPSYSPTSPGYSPASPSYSPTSPSY----SPTSPSYSP 1640
Query: 368 QSPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
SP Y PTSP+Y+ + + YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1641 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 1691
Score = 102 bits (253), Expect = 2e-20
Identities = 63/152 (41%), Positives = 86/152 (56%), Gaps = 4/152 (2%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP +P SP SP Y+ SP + + + +Y+P SP+Y TSP YS
Sbjct: 1691 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 1737
Query: 257 PSTPALAVSSPGYSPG---YSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVA 427
P++P+ + +SP YSP YSPTSPS P + SPQSP Y P SP+Y+ +
Sbjct: 1738 PTSPSYSPTSPSYSPSSPKYSPTSPSY----SPTSPSYSPQSPSYSPGSPSYSPSSPKYS 1793
Query: 428 AAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
+ YSP+SP+YSP SPN+ + SSP Y P S
Sbjct: 1794 PTSPSYSPTSPSYSPTSPNF-SPSSPTYSPAS 1824
Score = 100 bits (249), Expect = 6e-20
Identities = 65/156 (41%), Positives = 87/156 (55%), Gaps = 8/156 (5%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP +P SP SP Y+ SP + + + +Y+P SP+Y TSP YS
Sbjct: 1698 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 1744
Query: 257 PSTPALAVSSPGYSP---GYSPTSPSVGARG---GPAAGYASPQSPGYVPTSPAYA--RP 412
P++P+ + SSP YSP YSPTSPS + P + SP SP Y PTSP+Y+ P
Sbjct: 1745 PTSPSYSPSSPKYSPTSPSYSPTSPSYSPQSPSYSPGSPSYSPSSPKYSPTSPSYSPTSP 1804
Query: 413 GTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
+ N +SPSSP YSP SP+Y + +SP Y P S
Sbjct: 1805 SYSPTSPN-FSPSSPTYSPASPSY-SPTSPKYSPSS 1838
Score = 99.4 bits (246), Expect = 1e-19
Identities = 63/154 (40%), Positives = 83/154 (53%), Gaps = 6/154 (3%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP +P SP SP Y+ SP++ + + +Y+P SP+Y SP YS
Sbjct: 1733 SPSYSPT---SPSYSPTSPSYSPSSPKY--------SPTSPSYSPTSPSYSPQSP--SYS 1779
Query: 257 PSTPALAVSSPGY---SPGYSPTSPSVGARG---GPAAGYASPQSPGYVPTSPAYARPGT 418
P +P+ + SSP Y SP YSPTSPS P++ SP SP Y PTSP Y+
Sbjct: 1780 PGSPSYSPSSPKYSPTSPSYSPTSPSYSPTSPNFSPSSPTYSPASPSYSPTSPKYS---- 1835
Query: 419 VVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
++ YSP+SP YSP SP Y+ A SP Y P S
Sbjct: 1836 --PSSPKYSPTSPTYSPTSPKYSPA-SPTYSPTS 1866
Score = 93.6 bits (231), Expect = 8e-18
Identities = 60/175 (34%), Positives = 84/175 (48%), Gaps = 17/175 (9%)
Frame = +2
Query: 23 SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGG--- 193
SP S + T +P +P SP SP Y+ SP + G
Sbjct: 1733 SPSYSPTSPSYSPTSPSYSPSSPKYSPTSPSYSPTSPSYSPQSPSYSPGSPSYSPSSPKY 1792
Query: 194 ---AGAYAPASPAYMATSPGMG-----YSPSTPALAVSSPGYSPG---YSPTSPS---VG 331
+ +Y+P SP+Y TSP YSP++P+ + +SP YSP YSPTSP+
Sbjct: 1793 SPTSPSYSPTSPSYSPTSPNFSPSSPTYSPASPSYSPTSPKYSPSSPKYSPTSPTYSPTS 1852
Query: 332 ARGGPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAAS 496
+ PA+ SP SP Y P+SP Y+ + YSP+SP+YSP SP+Y+ S
Sbjct: 1853 PKYSPASPTYSPTSPKYSPSSPTYSPTSP---KGSTYSPTSPSYSPTSPSYSPTS 1904
Score = 86.7 bits (213), Expect = 9e-16
Identities = 59/153 (38%), Positives = 83/153 (54%), Gaps = 9/153 (5%)
Frame = +2
Query: 89 SPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTP 268
SP+ +P+M+P + G +P G G+ G G + A + ++ A SP P +P
Sbjct: 1507 SPSQSMSPQMTPWNQG---ATPMHGSGMTPGGPGFSPANSESTGFSPAYSPAWSPQPQSP 1563
Query: 269 ALAVSSP-------GYSPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYA--RPGTV 421
+SP SP YSP SPS A A+PQSPGY PTSP+Y+ PG
Sbjct: 1564 GSPANSPYIPSPAGPMSPSYSPASPSY-----LPASPATPQSPGYSPTSPSYSPTSPGYS 1618
Query: 422 VAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
A+ + YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1619 PASPS-YSPTSPSYSPTSPSY-SPTSPSYSPTS 1649
Score = 74.7 bits (182), Expect = 4e-12
Identities = 46/110 (41%), Positives = 61/110 (55%), Gaps = 3/110 (2%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP+ +P SPASP Y+ SP++ + + Y+P SP Y TSP YS
Sbjct: 1810 SPNFSPS---SPTYSPASPSYSPTSPKY--------SPSSPKYSPTSPTYSPTSPK--YS 1856
Query: 257 PSTPALAVSSPGYSPG---YSPTSPSVGARGGPAAGYASPQSPGYVPTSP 397
P++P + +SP YSP YSPTSP G+ P + SP SP Y PTSP
Sbjct: 1857 PASPTYSPTSPKYSPSSPTYSPTSPK-GSTYSPTSPSYSPTSPSYSPTSP 1905
Score = 57.4 bits (137), Expect = 6e-07
Identities = 36/104 (34%), Positives = 52/104 (50%), Gaps = 1/104 (0%)
Frame = +2
Query: 23 SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
SP S A + T + +P +P SP SP Y+ SP + + +
Sbjct: 1817 SPTYSPASPSYSPTSPKYSPSSPKYSPTSPTYSPTSPKYSPASPTY--------SPTSPK 1868
Query: 203 YAPASPAYMATSP-GMGYSPSTPALAVSSPGYSPGYSPTSPSVG 331
Y+P+SP Y TSP G YSP++P+ + +SP YSP TSP +G
Sbjct: 1869 YSPSSPTYSPTSPKGSTYSPTSPSYSPTSPSYSP----TSPGMG 1908
[21][TOP]
>UniRef100_Q9BMP3 DNA-directed RNA polymerase (Fragment) n=1 Tax=Monosiga brevicollis
RepID=Q9BMP3_MONBE
Length = 1743
Score = 111 bits (278), Expect = 3e-23
Identities = 75/183 (40%), Positives = 101/183 (55%), Gaps = 11/183 (6%)
Frame = +2
Query: 5 NATASFSPIMSSADAAGRATPGRM--TPGRSPAGR--FTP---RMSPASPGYAAMSPRFG 163
++ A +SP S +PG +PG SPA FTP SP SP Y+ SP G
Sbjct: 1507 SSPAGYSPTSPSYSPT---SPGMSPTSPGFSPASPAGFTPTSPHYSPTSPSYSPTSPNVG 1563
Query: 164 GGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY----SPGYSPTSPSVG 331
G + + +Y+P+SPAY A SP YSP++P+ + +SP SPGYSPTSP
Sbjct: 1564 GAQSPSYSPTSPSYSPSSPAYNAQSPA--YSPTSPSYSPTSPNVKSPTSPGYSPTSPGYS 1621
Query: 332 ARGGPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQ 511
P++ SP SP Y PTSP+Y+ + YSP+SP+YSP SPNY + +SP+Y
Sbjct: 1622 ----PSSPSYSPTSPNYSPTSPSYS------PTSPNYSPTSPSYSPTSPNY-SPTSPSYS 1670
Query: 512 PPS 520
P S
Sbjct: 1671 PTS 1673
Score = 111 bits (277), Expect = 4e-23
Identities = 80/210 (38%), Positives = 105/210 (50%), Gaps = 43/210 (20%)
Frame = +2
Query: 20 FSPIMSSADAAG---------RATPGRMTPG----------------RSPAGRF--TPRM 118
FSP+++ A + G ++ G M+PG SPAG +P
Sbjct: 1460 FSPVVAGAFSPGGMLSPGGIAQSPGGAMSPGGAMSPGVVSASPFYDPSSPAGYSPTSPSY 1519
Query: 119 SPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMG-------------YSP 259
SP SPG + SP F G + Y+P SP+Y TSP +G YSP
Sbjct: 1520 SPTSPGMSPTSPGFSPASPAGFTPTSPHYSPTSPSYSPTSPNVGGAQSPSYSPTSPSYSP 1579
Query: 260 STPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVAA 430
S+PA SP YSP YSPTSP+V + P GY SP SPGY P+SP+Y+
Sbjct: 1580 SSPAYNAQSPAYSPTSPSYSPTSPNVKSPTSP--GY-SPTSPGYSPSSPSYS------PT 1630
Query: 431 ANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
+ YSP+SP+YSP SPNY + +SP+Y P S
Sbjct: 1631 SPNYSPTSPSYSPTSPNY-SPTSPSYSPTS 1659
Score = 107 bits (267), Expect = 5e-22
Identities = 69/173 (39%), Positives = 88/173 (50%), Gaps = 8/173 (4%)
Frame = +2
Query: 20 FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAG 199
+SP S G +P SP +P SP+SP Y A SP +
Sbjct: 1548 YSPTSPSYSPTSPNVGGAQSPSYSPT---SPSYSPSSPAYNAQSPAYSPTSPSYSPTSPN 1604
Query: 200 AYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARG---GPAAGYA 361
+P SP Y TSPG YSPS+P+ + +SP YSP YSPTSP+ P +
Sbjct: 1605 VKSPTSPGYSPTSPG--YSPSSPSYSPTSPNYSPTSPSYSPTSPNYSPTSPSYSPTSPNY 1662
Query: 362 SPQSPGYVPTSPAYA--RPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQP 514
SP SP Y PTSP Y+ P + N YSP+SP+YSP SPNY + +SP+Y P
Sbjct: 1663 SPTSPSYSPTSPNYSPTSPSYSPTSPN-YSPTSPSYSPTSPNY-SPTSPSYSP 1713
Score = 101 bits (252), Expect = 3e-20
Identities = 65/180 (36%), Positives = 91/180 (50%), Gaps = 12/180 (6%)
Frame = +2
Query: 17 SFSPIMSSADAAGRATPGRMTPGRSPAGRF----TPRMSPASPGYAAMSPRFGGGLGGGP 184
S+SP + A + +P SP+ +P SP SP Y+ SP G
Sbjct: 1554 SYSPTSPNVGGAQSPSYSPTSPSYSPSSPAYNAQSPAYSPTSPSYSPTSPNVKSPTSPGY 1613
Query: 185 AGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARG---GP 346
+ + Y+P+SP+Y TSP YSP++P+ + +SP YSP YSPTSP+ P
Sbjct: 1614 SPTSPGYSPSSPSYSPTSPN--YSPTSPSYSPTSPNYSPTSPSYSPTSPNYSPTSPSYSP 1671
Query: 347 AAGYASPQSPGYVPTSPAYA--RPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
+ SP SP Y PTSP Y+ P + N YSP+SP+YSP + + +SP Y P S
Sbjct: 1672 TSPNYSPTSPSYSPTSPNYSPTSPSYSPTSPN-YSPTSPSYSPTANGTSGPTSPGYSPTS 1730
Score = 98.6 bits (244), Expect = 2e-19
Identities = 65/171 (38%), Positives = 85/171 (49%), Gaps = 5/171 (2%)
Frame = +2
Query: 17 SFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGA 196
++SP S +PG SP +P SP+SP Y+ SP + + +
Sbjct: 1590 AYSPTSPSYSPTSPNVKSPTSPGYSPT---SPGYSPSSPSYSPTSPNY--------SPTS 1638
Query: 197 GAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASP 367
+Y+P SP Y TSP YSP++P + +SP YSP YSPTSPS P + SP
Sbjct: 1639 PSYSPTSPNYSPTSPS--YSPTSPNYSPTSPSYSPTSPNYSPTSPSYS----PTSPNYSP 1692
Query: 368 QSPGYVPTSPAYA--RPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQP 514
SP Y PTSP Y+ P A P+SP YSP SP Y + +SP Y P
Sbjct: 1693 TSPSYSPTSPNYSPTSPSYSPTANGTSGPTSPGYSPTSPGY-SPTSPGYSP 1742
Score = 98.2 bits (243), Expect = 3e-19
Identities = 76/179 (42%), Positives = 95/179 (53%), Gaps = 23/179 (12%)
Frame = +2
Query: 53 GRATP---GRMTP----------GRSPAGRFTPRMSPA-------SPGYAAMSPRFGGGL 172
G ATP G MTP G++P G F+P ++ A SPG A SP GG +
Sbjct: 1430 GNATPFGMGGMTPQNASSPYFGAGQTPIGGFSPVVAGAFSPGGMLSPGGIAQSP--GGAM 1487
Query: 173 GGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARGG 343
G A G + ASP Y +SP GYSP++P+ + +SPG SP G+SP SP A
Sbjct: 1488 SPGGAMSPGVVS-ASPFYDPSSPA-GYSPTSPSYSPTSPGMSPTSPGFSPASP---AGFT 1542
Query: 344 PAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
P + + SP SP Y PTSP A + YSP+SP+YSP SP Y A SPAY P S
Sbjct: 1543 PTSPHYSPTSPSYSPTSPNVGG-----AQSPSYSPTSPSYSPSSPAY-NAQSPAYSPTS 1595
[22][TOP]
>UniRef100_A9V5W6 DNA-directed RNA polymerase n=1 Tax=Monosiga brevicollis
RepID=A9V5W6_MONBE
Length = 1307
Score = 111 bits (278), Expect = 3e-23
Identities = 75/183 (40%), Positives = 101/183 (55%), Gaps = 11/183 (6%)
Frame = +2
Query: 5 NATASFSPIMSSADAAGRATPGRM--TPGRSPAGR--FTP---RMSPASPGYAAMSPRFG 163
++ A +SP S +PG +PG SPA FTP SP SP Y+ SP G
Sbjct: 1071 SSPAGYSPTSPSYSPT---SPGMSPTSPGFSPASPAGFTPTSPHYSPTSPSYSPTSPNVG 1127
Query: 164 GGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY----SPGYSPTSPSVG 331
G + + +Y+P+SPAY A SP YSP++P+ + +SP SPGYSPTSP
Sbjct: 1128 GAQSPSYSPTSPSYSPSSPAYNAQSPA--YSPTSPSYSPTSPNVKSPTSPGYSPTSPGYS 1185
Query: 332 ARGGPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQ 511
P++ SP SP Y PTSP+Y+ + YSP+SP+YSP SPNY + +SP+Y
Sbjct: 1186 ----PSSPSYSPTSPNYSPTSPSYS------PTSPNYSPTSPSYSPTSPNY-SPTSPSYS 1234
Query: 512 PPS 520
P S
Sbjct: 1235 PTS 1237
Score = 111 bits (277), Expect = 4e-23
Identities = 80/210 (38%), Positives = 105/210 (50%), Gaps = 43/210 (20%)
Frame = +2
Query: 20 FSPIMSSADAAG---------RATPGRMTPG----------------RSPAGRF--TPRM 118
FSP+++ A + G ++ G M+PG SPAG +P
Sbjct: 1024 FSPVVAGAFSPGGMLSPGGIAQSPGGAMSPGGAMSPGVVSASPFYDPSSPAGYSPTSPSY 1083
Query: 119 SPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMG-------------YSP 259
SP SPG + SP F G + Y+P SP+Y TSP +G YSP
Sbjct: 1084 SPTSPGMSPTSPGFSPASPAGFTPTSPHYSPTSPSYSPTSPNVGGAQSPSYSPTSPSYSP 1143
Query: 260 STPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVAA 430
S+PA SP YSP YSPTSP+V + P GY SP SPGY P+SP+Y+
Sbjct: 1144 SSPAYNAQSPAYSPTSPSYSPTSPNVKSPTSP--GY-SPTSPGYSPSSPSYS------PT 1194
Query: 431 ANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
+ YSP+SP+YSP SPNY + +SP+Y P S
Sbjct: 1195 SPNYSPTSPSYSPTSPNY-SPTSPSYSPTS 1223
Score = 107 bits (267), Expect = 5e-22
Identities = 69/173 (39%), Positives = 88/173 (50%), Gaps = 8/173 (4%)
Frame = +2
Query: 20 FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAG 199
+SP S G +P SP +P SP+SP Y A SP +
Sbjct: 1112 YSPTSPSYSPTSPNVGGAQSPSYSPT---SPSYSPSSPAYNAQSPAYSPTSPSYSPTSPN 1168
Query: 200 AYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARG---GPAAGYA 361
+P SP Y TSPG YSPS+P+ + +SP YSP YSPTSP+ P +
Sbjct: 1169 VKSPTSPGYSPTSPG--YSPSSPSYSPTSPNYSPTSPSYSPTSPNYSPTSPSYSPTSPNY 1226
Query: 362 SPQSPGYVPTSPAYA--RPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQP 514
SP SP Y PTSP Y+ P + N YSP+SP+YSP SPNY + +SP+Y P
Sbjct: 1227 SPTSPSYSPTSPNYSPTSPSYSPTSPN-YSPTSPSYSPTSPNY-SPTSPSYSP 1277
Score = 101 bits (252), Expect = 3e-20
Identities = 65/180 (36%), Positives = 91/180 (50%), Gaps = 12/180 (6%)
Frame = +2
Query: 17 SFSPIMSSADAAGRATPGRMTPGRSPAGRF----TPRMSPASPGYAAMSPRFGGGLGGGP 184
S+SP + A + +P SP+ +P SP SP Y+ SP G
Sbjct: 1118 SYSPTSPNVGGAQSPSYSPTSPSYSPSSPAYNAQSPAYSPTSPSYSPTSPNVKSPTSPGY 1177
Query: 185 AGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARG---GP 346
+ + Y+P+SP+Y TSP YSP++P+ + +SP YSP YSPTSP+ P
Sbjct: 1178 SPTSPGYSPSSPSYSPTSPN--YSPTSPSYSPTSPNYSPTSPSYSPTSPNYSPTSPSYSP 1235
Query: 347 AAGYASPQSPGYVPTSPAYA--RPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
+ SP SP Y PTSP Y+ P + N YSP+SP+YSP + + +SP Y P S
Sbjct: 1236 TSPNYSPTSPSYSPTSPNYSPTSPSYSPTSPN-YSPTSPSYSPTANGTSGPTSPGYSPTS 1294
Score = 98.6 bits (244), Expect = 2e-19
Identities = 65/171 (38%), Positives = 85/171 (49%), Gaps = 5/171 (2%)
Frame = +2
Query: 17 SFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGA 196
++SP S +PG SP +P SP+SP Y+ SP + + +
Sbjct: 1154 AYSPTSPSYSPTSPNVKSPTSPGYSPT---SPGYSPSSPSYSPTSPNY--------SPTS 1202
Query: 197 GAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASP 367
+Y+P SP Y TSP YSP++P + +SP YSP YSPTSPS P + SP
Sbjct: 1203 PSYSPTSPNYSPTSPS--YSPTSPNYSPTSPSYSPTSPNYSPTSPSYS----PTSPNYSP 1256
Query: 368 QSPGYVPTSPAYA--RPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQP 514
SP Y PTSP Y+ P A P+SP YSP SP Y + +SP Y P
Sbjct: 1257 TSPSYSPTSPNYSPTSPSYSPTANGTSGPTSPGYSPTSPGY-SPTSPGYSP 1306
Score = 98.2 bits (243), Expect = 3e-19
Identities = 76/179 (42%), Positives = 95/179 (53%), Gaps = 23/179 (12%)
Frame = +2
Query: 53 GRATP---GRMTP----------GRSPAGRFTPRMSPA-------SPGYAAMSPRFGGGL 172
G ATP G MTP G++P G F+P ++ A SPG A SP GG +
Sbjct: 994 GNATPFGMGGMTPQNASSPYLGAGQTPIGGFSPVVAGAFSPGGMLSPGGIAQSP--GGAM 1051
Query: 173 GGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARGG 343
G A G + ASP Y +SP GYSP++P+ + +SPG SP G+SP SP A
Sbjct: 1052 SPGGAMSPGVVS-ASPFYDPSSPA-GYSPTSPSYSPTSPGMSPTSPGFSPASP---AGFT 1106
Query: 344 PAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
P + + SP SP Y PTSP A + YSP+SP+YSP SP Y A SPAY P S
Sbjct: 1107 PTSPHYSPTSPSYSPTSPNVGG-----AQSPSYSPTSPSYSPSSPAY-NAQSPAYSPTS 1159
[23][TOP]
>UniRef100_UPI000186501C hypothetical protein BRAFLDRAFT_115025 n=1 Tax=Branchiostoma floridae
RepID=UPI000186501C
Length = 1956
Score = 111 bits (277), Expect = 4e-23
Identities = 74/183 (40%), Positives = 103/183 (56%), Gaps = 15/183 (8%)
Frame = +2
Query: 17 SFSPIMSSADAAGRATP------GRMTPGRSPAG-RFTPR----MSPASPGYAAMSPRFG 163
++SP S + G A+P G M+P SPA + PR M+P SPGY+ SP +
Sbjct: 1564 AWSPTPGSPGSPGPASPYIPSPGGPMSPSYSPASPAYMPRSPGGMTPQSPGYSPTSPSY- 1622
Query: 164 GGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGA 334
+ + +Y+PASP Y TSP YSP++P+ + +SP YSP YSPTSPS
Sbjct: 1623 -------SPTSPSYSPASPNYSPTSPS--YSPTSPSYSPTSPSYSPTSPSYSPTSPSY-- 1671
Query: 335 RGGPAAGYASPQSPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQ 511
P + SP SP Y PTSP+Y+ + + YSP+SP+YSP SP+Y + +SP+Y
Sbjct: 1672 --SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYS 1728
Query: 512 PPS 520
P S
Sbjct: 1729 PTS 1731
Score = 102 bits (255), Expect = 1e-20
Identities = 64/154 (41%), Positives = 86/154 (55%), Gaps = 6/154 (3%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP +P SP SP Y+ SP + + + +Y+P SP+Y TSP YS
Sbjct: 1668 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 1714
Query: 257 PSTPALAVSSPGYSP---GYSPTSPSVGARGG---PAAGYASPQSPGYVPTSPAYARPGT 418
P++P+ + +SP YSP YSPTSPS P + SP SP Y PTSP+Y+
Sbjct: 1715 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYTPTSPKYSPTSPSYSPTSPSYS---- 1770
Query: 419 VVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
A+ YSP+SP+YSP SPNY + SP+Y P S
Sbjct: 1771 --PASPSYSPTSPSYSPSSPNY-SPQSPSYSPSS 1801
Score = 101 bits (252), Expect = 3e-20
Identities = 63/151 (41%), Positives = 87/151 (57%), Gaps = 3/151 (1%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP +P SP SP Y+ SP + + + +Y+P SP Y TSP YS
Sbjct: 1710 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPNYTPTSPK--YS 1756
Query: 257 PSTPALAVSSPGYSPG---YSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVA 427
P++P+ + +SP YSP YSPTSPS P++ SPQSP Y P+SP+Y+ P +
Sbjct: 1757 PTSPSYSPTSPSYSPASPSYSPTSPSY----SPSSPNYSPQSPSYSPSSPSYS-PSSPNP 1811
Query: 428 AANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
++ Y+P+SP YSP SP Y + SSP Y P S
Sbjct: 1812 SSPKYTPTSPKYSPSSPKY-SPSSPKYSPTS 1841
Score = 97.8 bits (242), Expect = 4e-19
Identities = 63/160 (39%), Positives = 85/160 (53%), Gaps = 12/160 (7%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP +P SP SP Y SP++ + + +Y+PASP+Y TSP YS
Sbjct: 1731 SPSYSPT---SPSYSPTSPNYTPTSPKY-SPTSPSYSPTSPSYSPASPSYSPTSP--SYS 1784
Query: 257 PSTPALAVSSPGY---SPGYSPTSPS--------VGARGGPAAGYASPQSPGYVPTSPAY 403
PS+P + SP Y SP YSP+SP+ + P++ SP SP Y PTSP Y
Sbjct: 1785 PSSPNYSPQSPSYSPSSPSYSPSSPNPSSPKYTPTSPKYSPSSPKYSPSSPKYSPTSPTY 1844
Query: 404 ARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
+ + A+ YSPS+P Y+P SP Y+ A SP Y P S
Sbjct: 1845 SPSSAKYSPASPSYSPSTPKYTPTSPKYSPA-SPTYTPTS 1883
Score = 97.8 bits (242), Expect = 4e-19
Identities = 61/158 (38%), Positives = 88/158 (55%), Gaps = 10/158 (6%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMG-- 250
+P SPA +P SP SP Y+ SP + + + +Y+P+SP+Y +SP
Sbjct: 1766 SPSYSPA---SPSYSPTSPSYSPSSPNY--------SPQSPSYSPSSPSYSPSSPNPSSP 1814
Query: 251 -YSPSTPALAVSSPGYSPG---YSPTSPSVG---ARGGPAAGYASPQSPGYVPTSPAYAR 409
Y+P++P + SSP YSP YSPTSP+ A+ PA+ SP +P Y PTSP Y+
Sbjct: 1815 KYTPTSPKYSPSSPKYSPSSPKYSPTSPTYSPSSAKYSPASPSYSPSTPKYTPTSPKYSP 1874
Query: 410 PG-TVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
T + YSP+SP+Y+P +P Y + +SP Y P S
Sbjct: 1875 ASPTYTPTSPKYSPTSPSYTPDTPKY-SPTSPKYSPTS 1911
Score = 96.3 bits (238), Expect = 1e-18
Identities = 77/171 (45%), Positives = 95/171 (55%), Gaps = 2/171 (1%)
Frame = +2
Query: 14 ASFSPIMSSADAAGRATPGRMTP-GRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAG 190
A FSP +S DA+G M+P G SPA TP SP SPG A SP GGP
Sbjct: 1543 AGFSPSAAS-DASG------MSPAGYSPAWSPTPG-SPGSPGPA--SPYIPSP--GGPM- 1589
Query: 191 GAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSPGYSPTSPSVGARGGPAAGYASPQ 370
+ +Y+PASPAYM SPG G +P SPGYSPTSPS P + SP
Sbjct: 1590 -SPSYSPASPAYMPRSPG-GMTPQ-----------SPGYSPTSPSYS----PTSPSYSPA 1632
Query: 371 SPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
SP Y PTSP+Y+ + + YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1633 SPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 1682
Score = 92.0 bits (227), Expect = 2e-17
Identities = 67/184 (36%), Positives = 86/184 (46%), Gaps = 16/184 (8%)
Frame = +2
Query: 17 SFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGA 196
S+SP S A + +P SP+ +P SP SP Y+ SP + P +
Sbjct: 1761 SYSPTSPSYSPASPSY-SPTSPSYSPS---SPNYSPQSPSYSPSSPSYSPS---SPNPSS 1813
Query: 197 GAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSPG---YSPTSPSVGA---RGGPAAGY 358
Y P SP Y +SP YSPS+P + +SP YSP YSP SPS + P +
Sbjct: 1814 PKYTPTSPKYSPSSPK--YSPSSPKYSPTSPTYSPSSAKYSPASPSYSPSTPKYTPTSPK 1871
Query: 359 ASPQSPGYVPTSPAYARPG-TVVAAANVYSPSSPAYSPFSPNYAAAS---------SPAY 508
SP SP Y PTSP Y+ + YSP+SP YSP SP Y+ S +P Y
Sbjct: 1872 YSPASPTYTPTSPKYSPTSPSYTPDTPKYSPTSPKYSPTSPTYSPTSPKGSTYSPTTPGY 1931
Query: 509 QPPS 520
P S
Sbjct: 1932 SPAS 1935
Score = 91.3 bits (225), Expect = 4e-17
Identities = 67/164 (40%), Positives = 88/164 (53%), Gaps = 22/164 (13%)
Frame = +2
Query: 95 AGRFTPRMSP-ASPGYAAMSPRFGG----GLGGGPAGGAGAYAPA-------------SP 220
AG T MSP +P +P +GG GLG G GA ++P+ SP
Sbjct: 1504 AGSPTASMSPQMTPWQQVGTPAYGGAWSPGLGSGMTPGAAGFSPSAASDASGMSPAGYSP 1563
Query: 221 AYMATSPGMGYSPSTPALAVSSPG--YSPGYSPTSPSVGARGGPAAGYASPQSPGYVPTS 394
A+ T PG SP + + SPG SP YSP SP+ R + G +PQSPGY PTS
Sbjct: 1564 AWSPT-PGSPGSPGPASPYIPSPGGPMSPSYSPASPAYMPR---SPGGMTPQSPGYSPTS 1619
Query: 395 PAYA--RPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
P+Y+ P A+ N YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1620 PSYSPTSPSYSPASPN-YSPTSPSYSPTSPSY-SPTSPSYSPTS 1661
Score = 89.7 bits (221), Expect = 1e-16
Identities = 59/163 (36%), Positives = 88/163 (53%), Gaps = 3/163 (1%)
Frame = +2
Query: 17 SFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGA 196
S+SP S+ + ++P +P +P +P+ SP+SP Y+ SP++ + +
Sbjct: 1796 SYSP---SSPSYSPSSPNPSSPKYTPT---SPKYSPSSPKYSPSSPKYSP-TSPTYSPSS 1848
Query: 197 GAYAPASPAYMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYASP 367
Y+PASP+Y ++P Y+P++P + +SP Y SP YSPTSPS P SP
Sbjct: 1849 AKYSPASPSYSPSTPK--YTPTSPKYSPASPTYTPTSPKYSPTSPSYT----PDTPKYSP 1902
Query: 368 QSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAAS 496
SP Y PTSP Y+ + YSP++P YSP SP Y+ S
Sbjct: 1903 TSPKYSPTSPTYSPTSP---KGSTYSPTTPGYSPASPTYSPES 1942
[24][TOP]
>UniRef100_UPI00005A0B2C PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
(RPB1) isoform 23 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B2C
Length = 1888
Score = 111 bits (277), Expect = 4e-23
Identities = 72/182 (39%), Positives = 96/182 (52%), Gaps = 13/182 (7%)
Frame = +2
Query: 14 ASFSPIMSSADAAGRATPGRMTPGR----SPAGRFTPRMSPASPGYAAMSPRFGGGLGGG 181
+ FSP S A + +PG P SP G +P SP SP Y SP GG
Sbjct: 1554 SGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSP-------GG 1606
Query: 182 PAGGAGAYAPASPAYMATSPGMG-----YSPSTPALAVSSPGYSP---GYSPTSPSVGAR 337
+ +Y+P SP+Y TSP YSP++P+ + +SP YSP YSPTSPS
Sbjct: 1607 YTPQSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSY--- 1663
Query: 338 GGPAAGYASPQSPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQP 514
P + SP SP Y PTSP+Y+ + + YSP+SP+YSP SP+Y + +SP+Y P
Sbjct: 1664 -SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSP 1721
Query: 515 PS 520
S
Sbjct: 1722 TS 1723
Score = 107 bits (268), Expect = 4e-22
Identities = 76/182 (41%), Positives = 98/182 (53%), Gaps = 13/182 (7%)
Frame = +2
Query: 14 ASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYA---------AMSPRFGG 166
A FSP +S DA+G +PG SPA TP SP SPG + AMSP +
Sbjct: 1543 AGFSPSAAS-DASG------FSPGYSPAWSPTPG-SPGSPGPSSPYIPSPGGAMSPSYSP 1594
Query: 167 GLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPSVGAR 337
G Y P SP+Y TSP YSP++P+ + +SP Y SP YSPTSPS
Sbjct: 1595 TSPAYEPRSPGGYTPQSPSYSPTSP--SYSPTSPSYSPTSPNYSPTSPSYSPTSPSY--- 1649
Query: 338 GGPAAGYASPQSPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQP 514
P + SP SP Y PTSP+Y+ + + YSP+SP+YSP SP+Y + +SP+Y P
Sbjct: 1650 -SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSP 1707
Query: 515 PS 520
S
Sbjct: 1708 TS 1709
Score = 97.4 bits (241), Expect = 5e-19
Identities = 62/151 (41%), Positives = 84/151 (55%), Gaps = 3/151 (1%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP +P SP SP Y+ SP + + + +Y+P SP+Y TSP YS
Sbjct: 1653 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 1699
Query: 257 PSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVA 427
P++P+ + +SP YSP YSPTSPS P + SP SP Y PTSP Y+ P + +
Sbjct: 1700 PTSPSYSPTSPSYSPTSPSYSPTSPSY----SPTSPSYSPTSPSYSPTSPNYS-PSSPTS 1754
Query: 428 AANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
Y+P+SP+YSP SP Y +SP Y P S
Sbjct: 1755 PK--YTPTSPSYSPSSPEY-TPTSPKYSPTS 1782
Score = 94.0 bits (232), Expect = 6e-18
Identities = 59/149 (39%), Positives = 80/149 (53%), Gaps = 3/149 (2%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP+ +P+ +P SP Y+ SP + + + Y+P SP Y TSP YS
Sbjct: 1744 SPNYSPSSPTSPKYTPTSPSYSPSSPEYTP-TSPKYSPTSPKYSPTSPKYSPTSPT--YS 1800
Query: 257 PSTPALAVSSPGYSPG---YSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVA 427
P+TP + +SP YSP Y+PTSP + P + SP SP Y PTSP Y+
Sbjct: 1801 PTTPKYSPTSPTYSPTSPVYTPTSP----KYSPTSPTYSPTSPKYSPTSPTYS---PTSP 1853
Query: 428 AANVYSPSSPAYSPFSPNYAAASSPAYQP 514
+ YSP+SP YSP SP Y + +SPA P
Sbjct: 1854 KGSTYSPTSPGYSPTSPTY-SLTSPAISP 1881
Score = 93.2 bits (230), Expect = 1e-17
Identities = 76/216 (35%), Positives = 101/216 (46%), Gaps = 52/216 (24%)
Frame = +2
Query: 29 IMSSADAAGRATPGRMTPGR--SPAGRFTPRMSP-------------------------- 124
I ++ G A P M G SP G +P M+P
Sbjct: 1486 IPTNIPGLGAAGPTGMFFGSAPSPMGGISPAMTPWNQGATPAYDPDPGAGSGMTPGAAGF 1545
Query: 125 ----------ASPGYA-AMSPRFGGGLGGGPA-------GGA--GAYAPASPAYMATSPG 244
SPGY+ A SP G GP+ GGA +Y+P SPAY SPG
Sbjct: 1546 SPSAASDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPG 1605
Query: 245 MGYSPSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPG 415
GY+P +P+ + +SP Y SP YSPTSP+ P + SP SP Y PTSP+Y+
Sbjct: 1606 -GYTPQSPSYSPTSPSYSPTSPSYSPTSPNY----SPTSPSYSPTSPSYSPTSPSYSPTS 1660
Query: 416 TVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
+ + YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1661 PSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 1695
Score = 91.7 bits (226), Expect = 3e-17
Identities = 59/156 (37%), Positives = 81/156 (51%), Gaps = 8/156 (5%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMG-Y 253
+P SP +P SP SP Y+ SP + + + +Y+P SP+Y TSP
Sbjct: 1702 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPNYSPS 1750
Query: 254 SPSTPALAVSSPGYSPG---YSPTSPS---VGARGGPAAGYASPQSPGYVPTSPAYARPG 415
SP++P +SP YSP Y+PTSP + P + SP SP Y PT+P Y+
Sbjct: 1751 SPTSPKYTPTSPSYSPSSPEYTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTS 1810
Query: 416 -TVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
T + VY+P+SP YSP SP Y + +SP Y P S
Sbjct: 1811 PTYSPTSPVYTPTSPKYSPTSPTY-SPTSPKYSPTS 1845
Score = 72.4 bits (176), Expect = 2e-11
Identities = 52/152 (34%), Positives = 69/152 (45%), Gaps = 3/152 (1%)
Frame = +2
Query: 23 SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
SP S + T + +P +P+ SP SP Y+ +P+
Sbjct: 1761 SPSYSPSSPEYTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPK--------------- 1805
Query: 203 YAPASPAYMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYASPQS 373
Y+P SP Y TSP Y+P++P + +SP Y SP YSPTSP+ + Y SP S
Sbjct: 1806 YSPTSPTYSPTSP--VYTPTSPKYSPTSPTYSPTSPKYSPTSPTYSPTSPKGSTY-SPTS 1862
Query: 374 PGYVPTSPAYARPGTVVAAANVYSPSSPAYSP 469
PGY PTSP YS +SPA SP
Sbjct: 1863 PGYSPTSP-------------TYSLTSPAISP 1881
[25][TOP]
>UniRef100_UPI00005A0B1C PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide
A isoform 8 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B1C
Length = 1719
Score = 111 bits (277), Expect = 4e-23
Identities = 72/182 (39%), Positives = 96/182 (52%), Gaps = 13/182 (7%)
Frame = +2
Query: 14 ASFSPIMSSADAAGRATPGRMTPGR----SPAGRFTPRMSPASPGYAAMSPRFGGGLGGG 181
+ FSP S A + +PG P SP G +P SP SP Y SP GG
Sbjct: 1485 SGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSP-------GG 1537
Query: 182 PAGGAGAYAPASPAYMATSPGMG-----YSPSTPALAVSSPGYSP---GYSPTSPSVGAR 337
+ +Y+P SP+Y TSP YSP++P+ + +SP YSP YSPTSPS
Sbjct: 1538 YTPQSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSY--- 1594
Query: 338 GGPAAGYASPQSPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQP 514
P + SP SP Y PTSP+Y+ + + YSP+SP+YSP SP+Y + +SP+Y P
Sbjct: 1595 -SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSP 1652
Query: 515 PS 520
S
Sbjct: 1653 TS 1654
Score = 101 bits (251), Expect = 4e-20
Identities = 65/153 (42%), Positives = 85/153 (55%), Gaps = 5/153 (3%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP +P SP SP Y+ SP + + + +Y+P SP+Y TSP YS
Sbjct: 1584 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 1630
Query: 257 PSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYA--RPGTV 421
P++P+ + +SP YSP YSPTSPS P + SP SP Y PTSP Y+ RP
Sbjct: 1631 PTSPSYSPTSPSYSPTSPSYSPTSPSYS----PTSPSYSPTSPSYSPTSPNYSPSRPNYT 1686
Query: 422 VAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
+ + YSP+SP+YSP SPNY SP Y P S
Sbjct: 1687 PTSPS-YSPTSPSYSPTSPNY-TPMSPNYSPTS 1717
Score = 90.1 bits (222), Expect = 8e-17
Identities = 57/140 (40%), Positives = 76/140 (54%), Gaps = 5/140 (3%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP +P SP SP Y+ SP + + + +Y+P SP+Y TSP YS
Sbjct: 1598 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 1644
Query: 257 PSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYA--RPGTV 421
P++P+ + +SP YSP YSPTSPS P + SP P Y PTSP+Y+ P
Sbjct: 1645 PTSPSYSPTSPSYSPTSPSYSPTSPSYS----PTSPNYSPSRPNYTPTSPSYSPTSPSYS 1700
Query: 422 VAAANVYSPSSPAYSPFSPN 481
+ N Y+P SP YSP SPN
Sbjct: 1701 PTSPN-YTPMSPNYSPTSPN 1719
Score = 70.5 bits (171), Expect = 7e-11
Identities = 44/105 (41%), Positives = 56/105 (53%), Gaps = 15/105 (14%)
Frame = +2
Query: 251 YSPSTPALAVSSPGYSPGYSPT-SPSVGARG--GPAAGY----ASPQSPGYVPTSPAY-- 403
Y P + G+SPGYSP SP+ G+ G GP++ Y SP Y PTSPAY
Sbjct: 1473 YGMEIPTNIPDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEP 1532
Query: 404 ARPGTVVAAANVYSPSSPAYSPFSPNYAAAS------SPAYQPPS 520
PG + YSP+SP+YSP SP+Y+ S SP+Y P S
Sbjct: 1533 RSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTS 1577
[26][TOP]
>UniRef100_UPI00005A0B1B PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide
A isoform 7 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B1B
Length = 1858
Score = 111 bits (277), Expect = 4e-23
Identities = 72/182 (39%), Positives = 96/182 (52%), Gaps = 13/182 (7%)
Frame = +2
Query: 14 ASFSPIMSSADAAGRATPGRMTPGR----SPAGRFTPRMSPASPGYAAMSPRFGGGLGGG 181
+ FSP S A + +PG P SP G +P SP SP Y SP GG
Sbjct: 1485 SGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSP-------GG 1537
Query: 182 PAGGAGAYAPASPAYMATSPGMG-----YSPSTPALAVSSPGYSP---GYSPTSPSVGAR 337
+ +Y+P SP+Y TSP YSP++P+ + +SP YSP YSPTSPS
Sbjct: 1538 YTPQSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSY--- 1594
Query: 338 GGPAAGYASPQSPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQP 514
P + SP SP Y PTSP+Y+ + + YSP+SP+YSP SP+Y + +SP+Y P
Sbjct: 1595 -SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSP 1652
Query: 515 PS 520
S
Sbjct: 1653 TS 1654
Score = 102 bits (253), Expect = 2e-20
Identities = 66/159 (41%), Positives = 87/159 (54%), Gaps = 11/159 (6%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP +P SP SP Y+ SP + + + +Y+P SP+Y TSP YS
Sbjct: 1584 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 1630
Query: 257 PSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYA--RPGTV 421
P++P+ + +SP YSP YSPTSPS P + SP SP Y PTSP Y+ RP
Sbjct: 1631 PTSPSYSPTSPSYSPTSPSYSPTSPSYS----PTSPSYSPTSPSYSPTSPNYSPSRPNYT 1686
Query: 422 VAAANVYSPSSPAYSPFSPNYAAAS------SPAYQPPS 520
+ + YSP+SP+YSP SPNY S SP+Y P S
Sbjct: 1687 PTSPS-YSPTSPSYSPTSPNYTPMSPNYSPTSPSYSPTS 1724
Score = 98.6 bits (244), Expect = 2e-19
Identities = 65/170 (38%), Positives = 85/170 (50%), Gaps = 4/170 (2%)
Frame = +2
Query: 23 SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
SP S + T +P R +P SP SP Y+ SP + + + + +
Sbjct: 1661 SPSYSPTSPSYSPTSPNYSPSRPNYTPTSPSYSPTSPSYSPTSPNY-TPMSPNYSPTSPS 1719
Query: 203 YAPASPAYMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYASPQS 373
Y+P SP Y TSP YSPS+P +SP Y SP YSPTSP + P + SP +
Sbjct: 1720 YSPTSPKYTPTSP--SYSPSSPEYTPTSPKYSPTSPKYSPTSP----KYSPTSPTYSPTT 1773
Query: 374 PGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
P Y PTSP Y+ V + YSP+SP YSP SP Y + +SP Y P S
Sbjct: 1774 PKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTSPKY-SPTSPTYSPTS 1822
Score = 95.5 bits (236), Expect = 2e-18
Identities = 61/153 (39%), Positives = 80/153 (52%), Gaps = 7/153 (4%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP +P SP SP Y+ SP + + + +Y+P SP+Y TSP YS
Sbjct: 1633 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPN--YS 1679
Query: 257 PSTPALAVSSPGYSP---GYSPTSPS---VGARGGPAAGYASPQSPGYVPTSPAYARPG- 415
PS P +SP YSP YSPTSP+ + P + SP SP Y PTSP+Y+
Sbjct: 1680 PSRPNYTPTSPSYSPTSPSYSPTSPNYTPMSPNYSPTSPSYSPTSPKYTPTSPSYSPSSP 1739
Query: 416 TVVAAANVYSPSSPAYSPFSPNYAAASSPAYQP 514
+ YSP+SP YSP SP Y + +SP Y P
Sbjct: 1740 EYTPTSPKYSPTSPKYSPTSPKY-SPTSPTYSP 1771
Score = 91.3 bits (225), Expect = 4e-17
Identities = 62/167 (37%), Positives = 80/167 (47%), Gaps = 3/167 (1%)
Frame = +2
Query: 23 SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
SP S + T + TP +P +P SP Y+ SP+
Sbjct: 1710 SPNYSPTSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYSPTSPK--------------- 1754
Query: 203 YAPASPAYMATSPGMGYSPSTPALAVSSPGYSPG---YSPTSPSVGARGGPAAGYASPQS 373
Y+P SP Y TSP YSP+TP + +SP YSP Y+PTSP + P + SP S
Sbjct: 1755 YSPTSPKYSPTSPT--YSPTTPKYSPTSPTYSPTSPVYTPTSP----KYSPTSPTYSPTS 1808
Query: 374 PGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQP 514
P Y PTSP Y+ + YSP+SP YSP SP Y + +SPA P
Sbjct: 1809 PKYSPTSPTYS---PTSPKGSTYSPTSPGYSPTSPTY-SLTSPAISP 1851
Score = 70.5 bits (171), Expect = 7e-11
Identities = 44/105 (41%), Positives = 56/105 (53%), Gaps = 15/105 (14%)
Frame = +2
Query: 251 YSPSTPALAVSSPGYSPGYSPT-SPSVGARG--GPAAGY----ASPQSPGYVPTSPAY-- 403
Y P + G+SPGYSP SP+ G+ G GP++ Y SP Y PTSPAY
Sbjct: 1473 YGMEIPTNIPDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEP 1532
Query: 404 ARPGTVVAAANVYSPSSPAYSPFSPNYAAAS------SPAYQPPS 520
PG + YSP+SP+YSP SP+Y+ S SP+Y P S
Sbjct: 1533 RSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTS 1577
[27][TOP]
>UniRef100_UPI00005A0B17 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
(RPB1) isoform 3 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B17
Length = 1788
Score = 111 bits (277), Expect = 4e-23
Identities = 72/182 (39%), Positives = 96/182 (52%), Gaps = 13/182 (7%)
Frame = +2
Query: 14 ASFSPIMSSADAAGRATPGRMTPGR----SPAGRFTPRMSPASPGYAAMSPRFGGGLGGG 181
+ FSP S A + +PG P SP G +P SP SP Y SP GG
Sbjct: 1554 SGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSP-------GG 1606
Query: 182 PAGGAGAYAPASPAYMATSPGMG-----YSPSTPALAVSSPGYSP---GYSPTSPSVGAR 337
+ +Y+P SP+Y TSP YSP++P+ + +SP YSP YSPTSPS
Sbjct: 1607 YTPQSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSY--- 1663
Query: 338 GGPAAGYASPQSPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQP 514
P + SP SP Y PTSP+Y+ + + YSP+SP+YSP SP+Y + +SP+Y P
Sbjct: 1664 -SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSP 1721
Query: 515 PS 520
S
Sbjct: 1722 TS 1723
Score = 107 bits (268), Expect = 4e-22
Identities = 76/182 (41%), Positives = 98/182 (53%), Gaps = 13/182 (7%)
Frame = +2
Query: 14 ASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYA---------AMSPRFGG 166
A FSP +S DA+G +PG SPA TP SP SPG + AMSP +
Sbjct: 1543 AGFSPSAAS-DASG------FSPGYSPAWSPTPG-SPGSPGPSSPYIPSPGGAMSPSYSP 1594
Query: 167 GLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPSVGAR 337
G Y P SP+Y TSP YSP++P+ + +SP Y SP YSPTSPS
Sbjct: 1595 TSPAYEPRSPGGYTPQSPSYSPTSP--SYSPTSPSYSPTSPNYSPTSPSYSPTSPSY--- 1649
Query: 338 GGPAAGYASPQSPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQP 514
P + SP SP Y PTSP+Y+ + + YSP+SP+YSP SP+Y + +SP+Y P
Sbjct: 1650 -SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSP 1707
Query: 515 PS 520
S
Sbjct: 1708 TS 1709
Score = 101 bits (251), Expect = 4e-20
Identities = 65/153 (42%), Positives = 85/153 (55%), Gaps = 5/153 (3%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP +P SP SP Y+ SP + + + +Y+P SP+Y TSP YS
Sbjct: 1653 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 1699
Query: 257 PSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYA--RPGTV 421
P++P+ + +SP YSP YSPTSPS P + SP SP Y PTSP Y+ RP
Sbjct: 1700 PTSPSYSPTSPSYSPTSPSYSPTSPSYS----PTSPSYSPTSPSYSPTSPNYSPSRPNYT 1755
Query: 422 VAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
+ + YSP+SP+YSP SPNY SP Y P S
Sbjct: 1756 PTSPS-YSPTSPSYSPTSPNY-TPMSPNYSPTS 1786
Score = 93.2 bits (230), Expect = 1e-17
Identities = 76/216 (35%), Positives = 101/216 (46%), Gaps = 52/216 (24%)
Frame = +2
Query: 29 IMSSADAAGRATPGRMTPGR--SPAGRFTPRMSP-------------------------- 124
I ++ G A P M G SP G +P M+P
Sbjct: 1486 IPTNIPGLGAAGPTGMFFGSAPSPMGGISPAMTPWNQGATPAYDPDPGAGSGMTPGAAGF 1545
Query: 125 ----------ASPGYA-AMSPRFGGGLGGGPA-------GGA--GAYAPASPAYMATSPG 244
SPGY+ A SP G GP+ GGA +Y+P SPAY SPG
Sbjct: 1546 SPSAASDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPG 1605
Query: 245 MGYSPSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPG 415
GY+P +P+ + +SP Y SP YSPTSP+ P + SP SP Y PTSP+Y+
Sbjct: 1606 -GYTPQSPSYSPTSPSYSPTSPSYSPTSPNY----SPTSPSYSPTSPSYSPTSPSYSPTS 1660
Query: 416 TVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
+ + YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1661 PSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 1695
Score = 90.1 bits (222), Expect = 8e-17
Identities = 57/140 (40%), Positives = 76/140 (54%), Gaps = 5/140 (3%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP +P SP SP Y+ SP + + + +Y+P SP+Y TSP YS
Sbjct: 1667 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 1713
Query: 257 PSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYA--RPGTV 421
P++P+ + +SP YSP YSPTSPS P + SP P Y PTSP+Y+ P
Sbjct: 1714 PTSPSYSPTSPSYSPTSPSYSPTSPSYS----PTSPNYSPSRPNYTPTSPSYSPTSPSYS 1769
Query: 422 VAAANVYSPSSPAYSPFSPN 481
+ N Y+P SP YSP SPN
Sbjct: 1770 PTSPN-YTPMSPNYSPTSPN 1788
[28][TOP]
>UniRef100_B4E3V7 DNA-directed RNA polymerase n=1 Tax=Homo sapiens RepID=B4E3V7_HUMAN
Length = 1935
Score = 111 bits (277), Expect = 4e-23
Identities = 72/182 (39%), Positives = 96/182 (52%), Gaps = 13/182 (7%)
Frame = +2
Query: 14 ASFSPIMSSADAAGRATPGRMTPGR----SPAGRFTPRMSPASPGYAAMSPRFGGGLGGG 181
+ FSP S A + +PG P SP G +P SP SP Y SP GG
Sbjct: 1520 SGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSP-------GG 1572
Query: 182 PAGGAGAYAPASPAYMATSPGMG-----YSPSTPALAVSSPGYSP---GYSPTSPSVGAR 337
+ +Y+P SP+Y TSP YSP++P+ + +SP YSP YSPTSPS
Sbjct: 1573 YTPQSPSYSPTSPSYSPTSPSYSPTSSNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS-- 1630
Query: 338 GGPAAGYASPQSPGYVPTSPAYARPGTVVAAANV-YSPSSPAYSPFSPNYAAASSPAYQP 514
P + SP SP Y PTSP+Y+ + + YSP+SP+YSP SP+Y + +SP+Y P
Sbjct: 1631 --PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSP 1687
Query: 515 PS 520
S
Sbjct: 1688 TS 1689
Score = 104 bits (259), Expect = 4e-21
Identities = 75/180 (41%), Positives = 99/180 (55%), Gaps = 11/180 (6%)
Frame = +2
Query: 14 ASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAA-MSPRFGGGLGGGPAG 190
A FSP +S DA+G +PG SPA TP SP SPG ++ P GG +
Sbjct: 1509 AGFSPSAAS-DASG------FSPGYSPAWSPTPG-SPGSPGPSSPYIPSPGGAM------ 1554
Query: 191 GAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP----------GYSPTSPSVGARG 340
+ +Y+P SPAY SPG GY+P +P+ + +SP YSP YSPTSPS
Sbjct: 1555 -SPSYSPTSPAYEPRSPG-GYTPQSPSYSPTSPSYSPTSPSYSPTSSNYSPTSPSYS--- 1609
Query: 341 GPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
P + SP SP Y PTSP+Y+ + YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1610 -PTSPSYSPTSPSYSPTSPSYS------PTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 1661
Score = 103 bits (257), Expect = 7e-21
Identities = 67/175 (38%), Positives = 90/175 (51%), Gaps = 9/175 (5%)
Frame = +2
Query: 23 SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
SP S + T +P S +P SP SP Y+ SP + + + +
Sbjct: 1577 SPSYSPTSPSYSPTSPSYSPTSSNYSPTSPSYSPTSPSYSPTSPSY--------SPTSPS 1628
Query: 203 YAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQS 373
Y+P SP+Y TSP YSP++P+ + +SP YSP YSPTSPS P + SP S
Sbjct: 1629 YSPTSPSYSPTSPS--YSPTSPSYSPTSPSYSPTSPSYSPTSPSYS----PTSPSYSPTS 1682
Query: 374 PGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAAS------SPAYQPPS 520
P Y PTSP+Y+ + YSP+SP+YSP SPNY+ S SP+Y P S
Sbjct: 1683 PSYSPTSPSYS------PTSPSYSPTSPSYSPTSPNYSPTSPNYTPTSPSYSPTS 1731
Score = 100 bits (248), Expect = 8e-20
Identities = 74/182 (40%), Positives = 98/182 (53%), Gaps = 18/182 (9%)
Frame = +2
Query: 29 IMSSADAAGRATPGRMTPGR--SPAGRFTPRMSP----ASPGYAAMSPRFGGGLGGGPAG 190
I ++ G A P M G SP G +P M+P A+P Y A SP G G+ G AG
Sbjct: 1451 IPTNIPGLGAAGPTGMFFGSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGSGMTPGAAG 1510
Query: 191 -------GAGAYAPA-SPAYMATSPGMGYSPSTPALAVSSPG--YSPGYSPTSPSVGARG 340
A ++P SPA+ T PG SP + + SPG SP YSPTSP+ R
Sbjct: 1511 FSPSAASDASGFSPGYSPAWSPT-PGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPR- 1568
Query: 341 GPAAGYASPQSPGYVPTSPAYA--RPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQP 514
+ G +PQSP Y PTSP+Y+ P ++N YSP+SP+YSP SP+Y + +SP+Y P
Sbjct: 1569 --SPGGYTPQSPSYSPTSPSYSPTSPSYSPTSSN-YSPTSPSYSPTSPSY-SPTSPSYSP 1624
Query: 515 PS 520
S
Sbjct: 1625 TS 1626
Score = 98.6 bits (244), Expect = 2e-19
Identities = 63/152 (41%), Positives = 82/152 (53%), Gaps = 4/152 (2%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP +P SP SP Y+ SP + + + Y+P SP Y TSP YS
Sbjct: 1682 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPNYSPTSPNYTPTSPS--YS 1728
Query: 257 PSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYA-RPGTVV 424
P++P+ + +SP Y SP YSPTSPS P + SP SP Y P+SP Y + T
Sbjct: 1729 PTSPSYSPTSPNYTPTSPNYSPTSPSYS----PTSPSYSPTSPSYSPSSPRYTPQSPTYT 1784
Query: 425 AAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
++ YSPSSP+YSP SP Y +SP Y P S
Sbjct: 1785 PSSPSYSPSSPSYSPTSPKY-TPTSPPYSPSS 1815
Score = 94.4 bits (233), Expect = 4e-18
Identities = 62/154 (40%), Positives = 78/154 (50%), Gaps = 6/154 (3%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP+ +PR +P SP Y SP + + + +Y+P SP Y TSP YS
Sbjct: 1766 SPSYSPS---SPRYTPQSPTYTPSSPSY--------SPSSPSYSPTSPKYTPTSP--PYS 1812
Query: 257 PSTPALAVSSPGY---SPGYSPTSPSVGARG---GPAAGYASPQSPGYVPTSPAYARPGT 418
PS+P +SP + SP YSPTSP G P SP SP Y PTSP Y
Sbjct: 1813 PSSPEYTPTSPKFSPTSPKYSPTSPKYSPTGPTYSPTTPKYSPTSPTYSPTSPVY----- 1867
Query: 419 VVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
+ YSP+SP YSP SP Y + +SP Y P S
Sbjct: 1868 -TPTSPKYSPTSPTYSPTSPQY-SPTSPTYSPTS 1899
Score = 92.0 bits (227), Expect = 2e-17
Identities = 61/167 (36%), Positives = 81/167 (48%), Gaps = 3/167 (1%)
Frame = +2
Query: 23 SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
SP S + + T + TP P +P +P SP ++ SP+
Sbjct: 1787 SPSYSPSSPSYSPTSPKYTPTSPPYSPSSPEYTPTSPKFSPTSPK--------------- 1831
Query: 203 YAPASPAYMATSPGMGYSPSTPALAVSSPGYSPG---YSPTSPSVGARGGPAAGYASPQS 373
Y+P SP Y T P YSP+TP + +SP YSP Y+PTSP + P + SP S
Sbjct: 1832 YSPTSPKYSPTGPT--YSPTTPKYSPTSPTYSPTSPVYTPTSP----KYSPTSPTYSPTS 1885
Query: 374 PGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQP 514
P Y PTSP Y+ + YSP+SP YSP SP Y + +SPA P
Sbjct: 1886 PQYSPTSPTYS---PTSPKGSTYSPTSPGYSPTSPTY-SLTSPAISP 1928
Score = 91.7 bits (226), Expect = 3e-17
Identities = 66/181 (36%), Positives = 93/181 (51%), Gaps = 13/181 (7%)
Frame = +2
Query: 17 SFSPIMSS-ADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGG 193
S+SP S + ++ R TP +P +P+ +P SP+SP Y+ SP++
Sbjct: 1761 SYSPTSPSYSPSSPRYTP--QSPTYTPS---SPSYSPSSPSYSPTSPKY--------TPT 1807
Query: 194 AGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYS---PGYSPTSPSVGARGGPAAGYAS 364
+ Y+P+SP Y TSP +SP++P + +SP YS P YSPT+P + P + S
Sbjct: 1808 SPPYSPSSPEYTPTSP--KFSPTSPKYSPTSPKYSPTGPTYSPTTP----KYSPTSPTYS 1861
Query: 365 PQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAAS---------SPAYQPP 517
P SP Y PTSP Y+ + YSP+SP YSP SP Y+ S SP Y P
Sbjct: 1862 PTSPVYTPTSPKYS------PTSPTYSPTSPQYSPTSPTYSPTSPKGSTYSPTSPGYSPT 1915
Query: 518 S 520
S
Sbjct: 1916 S 1916
[29][TOP]
>UniRef100_C5YGY9 DNA-directed RNA polymerase n=1 Tax=Sorghum bicolor
RepID=C5YGY9_SORBI
Length = 1857
Score = 110 bits (275), Expect = 6e-23
Identities = 76/195 (38%), Positives = 101/195 (51%), Gaps = 22/195 (11%)
Frame = +2
Query: 2 INATASFSPIMSSADAAGRATPGRMTP---GRSPAGR----------FTPRMSPASPGYA 142
IN ASFSP + + +PG +P G SP+ +P SPASP Y+
Sbjct: 1520 INTDASFSPYVGHMAFSPFPSPGGYSPSSGGYSPSSPVFTPEKGYSPLSPSYSPASPSYS 1579
Query: 143 AMSPRFGGGLGGGPAGGAGA--YAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GY 307
SP + G P + Y+P SP Y TSP YSP++P+ + +SP YSP Y
Sbjct: 1580 PTSPSY---TPGSPTYSPTSPNYSPTSPTYSPTSPS--YSPTSPSYSPTSPSYSPTSPSY 1634
Query: 308 SPTSPSVGARG---GPAAGYASPQSPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFS 475
SPTSPS P + SP SP Y PTSPAY+ + + YSP+SP+YSP S
Sbjct: 1635 SPTSPSYSPTSPSYSPTSPVYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTS 1694
Query: 476 PNYAAASSPAYQPPS 520
P+Y + +SP+Y P S
Sbjct: 1695 PSY-SPTSPSYSPTS 1708
Score = 105 bits (263), Expect = 1e-21
Identities = 67/173 (38%), Positives = 92/173 (53%), Gaps = 7/173 (4%)
Frame = +2
Query: 23 SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
SP S A + T TPG +P SP SP Y+ SP + + + +
Sbjct: 1568 SPSYSPASPSYSPTSPSYTPGSPTYSPTSPNYSPTSPTYSPTSPSY--------SPTSPS 1619
Query: 203 YAPASPAYMATSPGMGYSPSTPALAVSSPGYSPG---YSPTSPSVGARG---GPAAGYAS 364
Y+P SP+Y TSP YSP++P+ + +SP YSP YSPTSP+ P + S
Sbjct: 1620 YSPTSPSYSPTSPS--YSPTSPSYSPTSPSYSPTSPVYSPTSPAYSPTSPAYSPTSPSYS 1677
Query: 365 PQSPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
P SP Y PTSP+Y+ + + YSP+SP+YSP SP+Y + +SPAY P S
Sbjct: 1678 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPAYSPTS 1729
Score = 99.4 bits (246), Expect = 1e-19
Identities = 68/179 (37%), Positives = 91/179 (50%), Gaps = 13/179 (7%)
Frame = +2
Query: 23 SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
SP+ S A T +P SP +P SP SP Y+ SP + + + +
Sbjct: 1652 SPVYSPTSPAYSPT----SPAYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPS 1696
Query: 203 YAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQS 373
Y+P SP+Y TSP YSP++P+ + +SP YSP GYSPTSPS SP S
Sbjct: 1697 YSPTSPSYSPTSPS--YSPTSPSYSPTSPAYSPTSPGYSPTSPSY-----------SPTS 1743
Query: 374 PGYVPTSPAYARPGTVVAAANVYSPS----------SPAYSPFSPNYAAASSPAYQPPS 520
P Y PTSP+Y + ++ YSPS SP+YSP SP Y + +SP+Y PS
Sbjct: 1744 PSYSPTSPSYNPSSAKYSPSHAYSPSSPRMTPYSQTSPSYSPTSPTY-SPTSPSYSQPS 1801
Score = 86.7 bits (213), Expect = 9e-16
Identities = 62/168 (36%), Positives = 82/168 (48%), Gaps = 19/168 (11%)
Frame = +2
Query: 74 MTPGRSPAGRFTPRMSPASPGY--------------AAMSPRFGGGLGGGPAGGAGAYAP 211
MTP RSP SP Y A+ SP + G + P G Y+P
Sbjct: 1488 MTPARSPISGTPYHEGMMSPSYLLSPNIRASPINTDASFSP-YVGHMAFSPFPSPGGYSP 1546
Query: 212 ASPAYMATSPGM----GYSPSTPALAVSSPGYSPGYSPTSPSVGARGGPAAGYASPQSPG 379
+S Y +SP GYSP +P+ + +SP YS PTSPS P + SP SP
Sbjct: 1547 SSGGYSPSSPVFTPEKGYSPLSPSYSPASPSYS----PTSPSY----TPGSPTYSPTSPN 1598
Query: 380 YVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
Y PTSP Y+ + + YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1599 YSPTSPTYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 1645
Score = 80.9 bits (198), Expect = 5e-14
Identities = 61/159 (38%), Positives = 77/159 (48%), Gaps = 6/159 (3%)
Frame = +2
Query: 17 SFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGA 196
S+SP S A +PG SP +P SP SP Y+ SP + +
Sbjct: 1710 SYSPTSPSYSPTSPAY-SPTSPGYSPT---SPSYSPTSPSYSPTSPSYNPS--SAKYSPS 1763
Query: 197 GAYAPASPA---YMATSPGMGYSPSTPALAVSSPGYS---PGYSPTSPSVGARGGPAAGY 358
AY+P+SP Y TSP YSP++P + +SP YS P YSPTSP GGP
Sbjct: 1764 HAYSPSSPRMTPYSQTSPS--YSPTSPTYSPTSPSYSQPSPSYSPTSP-FNTSGGP---- 1816
Query: 359 ASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFS 475
SP Y PTSP Y+ G+ YSP++P YSP S
Sbjct: 1817 ----SPDYSPTSPNYSPSGS-------YSPTAPGYSPSS 1844
[30][TOP]
>UniRef100_A4S3M0 DNA-directed RNA polymerase n=1 Tax=Ostreococcus lucimarinus CCE9901
RepID=A4S3M0_OSTLU
Length = 1646
Score = 110 bits (275), Expect = 6e-23
Identities = 79/183 (43%), Positives = 95/183 (51%), Gaps = 27/183 (14%)
Frame = +2
Query: 53 GRATPGR---MTPGR---------------SPAGRFTP-----RMSPASPGYAAMSPRFG 163
G TPG MTPGR SP G +P SP S G A SP
Sbjct: 1458 GSRTPGHGGMMTPGRDGTPGWGSKSPSFLLSPGGHQSPFDTSMAFSPYSDGMA-FSPGMS 1516
Query: 164 GGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGA 334
G GG + + AY+P SPAY TSP YSP++PA + +SP YSP YSPTSP+
Sbjct: 1517 PGGFGGYSPTSPAYSPTSPAYSPTSPA--YSPTSPAYSPTSPAYSPTSPAYSPTSPAY-- 1572
Query: 335 RGGPAAGYASPQSPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQ 511
P + SP SP Y PTSPAY+ + + YSP+SPAYSP SP Y + +SPAY
Sbjct: 1573 --SPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAY-SPTSPAYS 1629
Query: 512 PPS 520
P S
Sbjct: 1630 PTS 1632
Score = 101 bits (251), Expect = 4e-20
Identities = 63/145 (43%), Positives = 80/145 (55%), Gaps = 8/145 (5%)
Frame = +2
Query: 77 TPGRSPAG-----RFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSP 241
+PG SP G +P SP SP Y+ SP + + + AY+P SPAY TSP
Sbjct: 1512 SPGMSPGGFGGYSPTSPAYSPTSPAYSPTSPAY--------SPTSPAYSPTSPAYSPTSP 1563
Query: 242 GMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARP 412
YSP++PA + +SP YSP YSPTSP+ P + SP SP Y PTSPAY+
Sbjct: 1564 A--YSPTSPAYSPTSPAYSPTSPAYSPTSPAYS----PTSPAYSPTSPAYSPTSPAYS-- 1615
Query: 413 GTVVAAANVYSPSSPAYSPFSPNYA 487
+ YSP+SPAYSP SP Y+
Sbjct: 1616 ----PTSPAYSPTSPAYSPTSPAYS 1636
Score = 57.0 bits (136), Expect = 8e-07
Identities = 37/100 (37%), Positives = 48/100 (48%), Gaps = 3/100 (3%)
Frame = +2
Query: 23 SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
SP S A T +P +P SP SP Y+ SP + + + A
Sbjct: 1548 SPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAY--------SPTSPA 1599
Query: 203 YAPASPAYMATSPGMGYSPSTPALAVSSPGY---SPGYSP 313
Y+P SPAY TSP YSP++PA + +SP Y SP YSP
Sbjct: 1600 YSPTSPAYSPTSPA--YSPTSPAYSPTSPAYSPTSPAYSP 1637
[31][TOP]
>UniRef100_Q5ACI7 DNA-directed RNA polymerase n=1 Tax=Candida albicans
RepID=Q5ACI7_CANAL
Length = 1728
Score = 110 bits (275), Expect = 6e-23
Identities = 75/174 (43%), Positives = 96/174 (55%), Gaps = 3/174 (1%)
Frame = +2
Query: 8 ATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPA 187
AT+ FS +S + G +PG G SP +P SP SP YA SP + A
Sbjct: 1520 ATSPFSYGYNSITSPGYTSPGY---GYSPT---SPSYSPTSPSYAPTSPAYSP-TSPSYA 1572
Query: 188 GGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSPG---YSPTSPSVGARGGPAAGY 358
+ AY+P SP+Y TSP YSP++PA + +SP YSP YSPTSPS P +
Sbjct: 1573 PTSPAYSPTSPSYAPTSPA--YSPTSPAYSPTSPSYSPTSPQYSPTSPSYS----PTSPS 1626
Query: 359 ASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
SP SP Y PTSPAY+ + YSP+SP+YSP SP Y + +SP+Y P S
Sbjct: 1627 YSPTSPSYSPTSPAYS------PTSPSYSPTSPSYSPTSPQY-SPTSPSYSPTS 1673
Score = 98.6 bits (244), Expect = 2e-19
Identities = 61/150 (40%), Positives = 83/150 (55%), Gaps = 4/150 (2%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP +P SP SP Y+ SP++ + + +Y+P SP+Y TSP YS
Sbjct: 1589 SPAYSPT---SPAYSPTSPSYSPTSPQY--------SPTSPSYSPTSPSYSPTSPS--YS 1635
Query: 257 PSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVA 427
P++PA + +SP YSP YSPTSP P + SP SP Y PTSP+Y+ +
Sbjct: 1636 PTSPAYSPTSPSYSPTSPSYSPTSPQYS----PTSPSYSPTSPQYSPTSPSYSPTSPQYS 1691
Query: 428 AAN-VYSPSSPAYSPFSPNYAAASSPAYQP 514
+ YSP+SP YSP SP Y + SP Y+P
Sbjct: 1692 PTSPQYSPTSPQYSPTSPQY-SPGSPGYEP 1720
Score = 88.6 bits (218), Expect = 2e-16
Identities = 70/180 (38%), Positives = 87/180 (48%), Gaps = 7/180 (3%)
Frame = +2
Query: 2 INATASFSPI----MSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGG 169
I+A A FSPI M+ + G + G SPA SP S GY +++
Sbjct: 1486 IDAGAGFSPIHIAQMNEGNIGGLTSYGGQPT--SPAAT-----SPFSYGYNSIT------ 1532
Query: 170 LGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPSVGARG 340
SP Y TSPG GYSP++P+ + +SP Y SP YSPTSPS
Sbjct: 1533 ---------------SPGY--TSPGYGYSPTSPSYSPTSPSYAPTSPAYSPTSPSYA--- 1572
Query: 341 GPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
P + SP SP Y PTSPAY SP+SPAYSP SP+Y + +SP Y P S
Sbjct: 1573 -PTSPAYSPTSPSYAPTSPAY-------------SPTSPAYSPTSPSY-SPTSPQYSPTS 1617
Score = 86.7 bits (213), Expect = 9e-16
Identities = 59/158 (37%), Positives = 74/158 (46%), Gaps = 3/158 (1%)
Frame = +2
Query: 14 ASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGG 193
A SP S A T +P +P SP SP Y+ SP + +
Sbjct: 1586 APTSPAYSPTSPAYSPTSPSYSPTSPQYSPTSPSYSPTSPSYSPTSPSY--------SPT 1637
Query: 194 AGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSPG---YSPTSPSVGARGGPAAGYAS 364
+ AY+P SP+Y TSP YSP++P + +SP YSP YSPTSPS P + S
Sbjct: 1638 SPAYSPTSPSYSPTSPS--YSPTSPQYSPTSPSYSPTSPQYSPTSPSYS----PTSPQYS 1691
Query: 365 PQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSP 478
P SP Y PTSP Y+ + YSP SP Y P P
Sbjct: 1692 PTSPQYSPTSPQYS------PTSPQYSPGSPGYEPEPP 1723
[32][TOP]
>UniRef100_Q4QZ03 DNA-directed RNA polymerase (Fragment) n=1 Tax=Solanum tuberosum
RepID=Q4QZ03_SOLTU
Length = 361
Score = 110 bits (274), Expect = 8e-23
Identities = 73/170 (42%), Positives = 91/170 (53%), Gaps = 3/170 (1%)
Frame = +2
Query: 14 ASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGG 193
A FSP + G A +PG SP+ +P SP+SPGY+ SP
Sbjct: 104 AQFSPYVG-----GMAFSPTSSPGYSPS---SPGYSPSSPGYSPTSP------------- 142
Query: 194 AGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYAS 364
Y+P SP Y TSPG YSP++P + SSPGYSP YSPTSPS P + S
Sbjct: 143 --GYSPTSPGYSPTSPG--YSPTSPTYSPSSPGYSPTSPAYSPTSPSY----SPTSPSYS 194
Query: 365 PQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQP 514
P S Y PTSP+Y+ + +YSP+SPAYSP SP Y + +SPAY P
Sbjct: 195 PTSSSYSPTSPSYS------PTSPIYSPTSPAYSPTSPAY-SPTSPAYSP 237
Score = 95.1 bits (235), Expect = 3e-18
Identities = 68/179 (37%), Positives = 88/179 (49%), Gaps = 13/179 (7%)
Frame = +2
Query: 23 SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
SP S + T +P S +P SP SP Y+ SP + + + A
Sbjct: 176 SPAYSPTSPSYSPTSPSYSPTSSSYSPTSPSYSPTSPIYSPTSPAY--------SPTSPA 227
Query: 203 YAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVG----ARGGPAAGYA 361
Y+P SPAY T P YSP+ P+ + +SP YSP YSPTSPS A + GY+
Sbjct: 228 YSPTSPAYSPTLPS--YSPTLPSYSPTSPSYSPTSPSYSPTSPSYSPTFPAYSPTSPGYS 285
Query: 362 ------SPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
SP SP Y PTSP+Y P + + YSP+SP SP SP + SSP+Y P S
Sbjct: 286 PTSPSYSPTSPSYSPTSPSY-NPSARYSPSLAYSPTSPKLSPSSP--YSPSSPSYSPTS 341
Score = 94.7 bits (234), Expect = 3e-18
Identities = 70/168 (41%), Positives = 83/168 (49%), Gaps = 19/168 (11%)
Frame = +2
Query: 74 MTPGRSPAGRFTPRMSPASPGYAA-----MSPRFGGGLGGGPAGGAGAYAPASPAYMATS 238
MTPGRSP SP Y MSP P G A++P S S
Sbjct: 69 MTPGRSPISGTPYHDGMMSPNYLLSPNMRMSPITDAQFS--PYVGGMAFSPTS------S 120
Query: 239 PGMGYSPSTPALAVSSPGY---SPGYSPTSPSVGARG---GPAAGYASPQSPGYVPTSPA 400
PG YSPS+P + SSPGY SPGYSPTSP P + SP SPGY PTSPA
Sbjct: 121 PG--YSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPA 178
Query: 401 YARPG--------TVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
Y+ + ++ YSP+SP+YSP SP Y + +SPAY P S
Sbjct: 179 YSPTSPSYSPTSPSYSPTSSSYSPTSPSYSPTSPIY-SPTSPAYSPTS 225
Score = 94.7 bits (234), Expect = 3e-18
Identities = 65/176 (36%), Positives = 88/176 (50%), Gaps = 12/176 (6%)
Frame = +2
Query: 23 SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGG------GP 184
SP S ++ T +P +P SP SP Y+ SP + L
Sbjct: 190 SPSYSPTSSSYSPTSPSYSPTSPIYSPTSPAYSPTSPAYSPTSPAYSPTLPSYSPTLPSY 249
Query: 185 AGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARG---GP 346
+ + +Y+P SP+Y TSP YSP+ PA + +SPGYSP YSPTSPS P
Sbjct: 250 SPTSPSYSPTSPSYSPTSPS--YSPTFPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYNP 307
Query: 347 AAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQP 514
+A Y+ S Y PTSP + ++ YSP+SP+YSP SP+Y + SSP Y P
Sbjct: 308 SARYSP--SLAYSPTSPKLSPSSPYSPSSPSYSPTSPSYSPTSPSY-SPSSPTYSP 360
[33][TOP]
>UniRef100_A6SI63 DNA-directed RNA polymerase n=1 Tax=Botryotinia fuckeliana B05.10
RepID=A6SI63_BOTFB
Length = 1742
Score = 110 bits (274), Expect = 8e-23
Identities = 81/207 (39%), Positives = 110/207 (53%), Gaps = 38/207 (18%)
Frame = +2
Query: 14 ASFSPIMSSAD--AAGRATP----GRMTP----GRSPAGRFTP-----------RMSPAS 130
A FSPI S+ +G AT G M+P RSP G ++P SP+S
Sbjct: 1521 AQFSPIQSAGSDTPSGFATEYSGLGGMSPYAAGSRSPGGGYSPTSPFNASPSSPNFSPSS 1580
Query: 131 PGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPA-LAVSSPGYSP-- 301
PGY+ SP GGG G A ++P SPA+ TSP YSP++P+ ++ +SP YSP
Sbjct: 1581 PGYSPTSPMMGGGASPGYAVSP-RFSPVSPAFTPTSPA--YSPTSPSFVSPTSPSYSPTS 1637
Query: 302 -GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYA-----------RPGTVVAAAN-VY 442
YSPTSP++ G P + SP SP Y PTSP Y+ PG+ ++ + VY
Sbjct: 1638 PNYSPTSPNI--HGSPTSPSYSPTSPSYSPTSPNYSPTSPNYAGNKVSPGSGLSPTSPVY 1695
Query: 443 SPSSPAYSPFSPNYAA-ASSPAYQPPS 520
SP+SP +SP SP + ++SP Y P S
Sbjct: 1696 SPTSPNWSPSSPQHQGNSTSPKYSPTS 1722
Score = 102 bits (253), Expect = 2e-20
Identities = 67/172 (38%), Positives = 92/172 (53%), Gaps = 8/172 (4%)
Frame = +2
Query: 5 NATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGP 184
NA+ S SP S + T M G SP +PR SP SP + SP +
Sbjct: 1568 NASPS-SPNFSPSSPGYSPTSPMMGGGASPGYAVSPRFSPVSPAFTPTSPAYSPTSPSFV 1626
Query: 185 AGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPS-VGARGGPAA 352
+ + +Y+P SP Y TSP + SP++P+ + +SP Y SP YSPTSP+ G + P +
Sbjct: 1627 SPTSPSYSPTSPNYSPTSPNIHGSPTSPSYSPTSPSYSPTSPNYSPTSPNYAGNKVSPGS 1686
Query: 353 GYASPQSPGYVPTSPAYARPGTVVAAAN----VYSPSSPAYSPFSPNYAAAS 496
G SP SP Y PTSP ++ P + N YSP+SP+YSP SPN++ S
Sbjct: 1687 G-LSPTSPVYSPTSPNWS-PSSPQHQGNSTSPKYSPTSPSYSPTSPNFSPTS 1736
Score = 53.9 bits (128), Expect = 7e-06
Identities = 37/112 (33%), Positives = 53/112 (47%), Gaps = 7/112 (6%)
Frame = +2
Query: 17 SFSPIMSSADAAGRATPGRMT-PGRSPAGRFTPRMSPASPGYAAMSPRFGGGL---GGGP 184
S+SP + G T P SP +P SP SP Y+ SP + G G G
Sbjct: 1632 SYSPTSPNYSPTSPNIHGSPTSPSYSPT---SPSYSPTSPNYSPTSPNYAGNKVSPGSGL 1688
Query: 185 AGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVG 331
+ + Y+P SP + +SP + ++P + +SP YSP +SPTSP G
Sbjct: 1689 SPTSPVYSPTSPNWSPSSPQHQGNSTSPKYSPTSPSYSPTSPNFSPTSPRGG 1740
[34][TOP]
>UniRef100_Q99368 DNA-directed RNA polymerase (Fragment) n=1 Tax=Glycine max
RepID=Q99368_SOYBN
Length = 977
Score = 109 bits (273), Expect = 1e-22
Identities = 76/209 (36%), Positives = 103/209 (49%), Gaps = 37/209 (17%)
Frame = +2
Query: 5 NATASFSPIMSSADAAGRATPGRM--TPGRSPAGR----FTPRMSPASPGYAAMSPRFGG 166
++ A FSP + + ++PG +PG SP+ +P SP SPGY+ SP +
Sbjct: 709 SSDAQFSPYVGGMAFSPSSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPTYSP 768
Query: 167 GLGG----GPAGG---------AGAYAPASPAYMATSPGMG------------YSPSTPA 271
G PA + AY+P SPAY +TSP YSP++P+
Sbjct: 769 SSPGYSPTSPAYSPTSPSYSPTSPAYSPTSPAYSSTSPAYSPTSPSYSPTSPAYSPTSPS 828
Query: 272 LAVSSPGYSP---GYSPTSPSVGARG---GPAAGYASPQSPGYVPTSPAYARPGTVVAAA 433
+++SP YSP YSPTSPS P + SP SP Y PTSP+Y + +
Sbjct: 829 YSLTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPSYSPTSPSYSPTSPSYNPQSAKYSPS 888
Query: 434 NVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
YSPSSP SP SPNY + +SP+Y P S
Sbjct: 889 LAYSPSSPRLSPTSPNY-SPTSPSYSPTS 916
Score = 85.1 bits (209), Expect = 3e-15
Identities = 62/175 (35%), Positives = 81/175 (46%), Gaps = 19/175 (10%)
Frame = +2
Query: 8 ATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPA 187
A +S SP S + T +P +P SP SP Y+ SP + PA
Sbjct: 800 AYSSTSPAYSPTSPSYSPTSPAYSPTSPSYSLTSPSYSPTSPSYSPTSPSYSPT---SPA 856
Query: 188 GG--AGAYAPASPAYMAT-----------SPGMGYSPSTPALAVSSPGY---SPGYSPTS 319
+ +Y+P SP+Y T SP + YSPS+P L+ +SP Y SP YSPTS
Sbjct: 857 YSPTSPSYSPTSPSYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPTSPNYSPTSPSYSPTS 916
Query: 320 PSVGARG---GPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFS 475
PS P++ Y S SP Y PTSP + + + YSPS P YSP S
Sbjct: 917 PSYSPSSPTYSPSSPYNSGVSPDYSPTSPQF-------SPSAGYSPSQPGYSPSS 964
Score = 76.6 bits (187), Expect = 1e-12
Identities = 55/142 (38%), Positives = 69/142 (48%), Gaps = 8/142 (5%)
Frame = +2
Query: 17 SFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGG- 193
S+SP S A +P SP +P SP SP Y S ++ L P+
Sbjct: 842 SYSPTSPSYSPTSPAY-SPTSPSYSPT---SPSYSPTSPSYNPQSAKYSPSLAYSPSSPR 897
Query: 194 ----AGAYAPASPAYMATSPGMGYSPSTPALAVSSP---GYSPGYSPTSPSVGARGGPAA 352
+ Y+P SP+Y TSP YSPS+P + SSP G SP YSPTSP P+A
Sbjct: 898 LSPTSPNYSPTSPSYSPTSPS--YSPSSPTYSPSSPYNSGVSPDYSPTSPQFS----PSA 951
Query: 353 GYASPQSPGYVPTSPAYARPGT 418
GY SP PGY P+S + P T
Sbjct: 952 GY-SPSQPGYSPSSTSQDTPQT 972
Score = 58.2 bits (139), Expect = 4e-07
Identities = 47/128 (36%), Positives = 59/128 (46%), Gaps = 5/128 (3%)
Frame = +2
Query: 152 PRFGGGLGGGPAGGAGAYAPA---SPAYMATSPGMGYSPSTPALAVSSPGYSPGYSPTSP 322
P + GL G GA Y SP+Y+ SP + SPS+ A SP
Sbjct: 671 PSYTDGLDFGIMSGATPYHEGTMMSPSYLL-SPNLRLSPSSDA-------------QFSP 716
Query: 323 SVGARGGPAAGYASPQSPGYVPTSPAY--ARPGTVVAAANVYSPSSPAYSPFSPNYAAAS 496
VG ++ SPGY P+SP Y + PG + YSP+SP YSP SP Y + S
Sbjct: 717 YVGGMA-----FSPSSSPGYSPSSPGYSPSSPGYSPTSPG-YSPTSPGYSPTSPTY-SPS 769
Query: 497 SPAYQPPS 520
SP Y P S
Sbjct: 770 SPGYSPTS 777
[35][TOP]
>UniRef100_B9WN64 DNA-directed RNA polymerase n=1 Tax=Candida dubliniensis CD36
RepID=B9WN64_CANDC
Length = 1735
Score = 109 bits (273), Expect = 1e-22
Identities = 72/174 (41%), Positives = 99/174 (56%), Gaps = 3/174 (1%)
Frame = +2
Query: 8 ATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPA 187
AT+ FS ++A + G A+PG G SP +P SP SP Y+ SP + +
Sbjct: 1520 ATSPFSFGYNTATSPGYASPGY---GYSPT---SPSYSPTSPSYSPTSPSY--------S 1565
Query: 188 GGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGY 358
+ +Y+P SP+Y TSP YSP++P+ + +SP YSP YSPTSPS P +
Sbjct: 1566 PTSPSYSPTSPSYSPTSPS--YSPTSPSYSPTSPSYSPTSPSYSPTSPSYS----PTSPS 1619
Query: 359 ASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
SP SPGY PTSP+Y+ + YSP+SP+YSP SP+Y + +SP Y P S
Sbjct: 1620 YSPTSPGYSPTSPSYS------PTSPSYSPTSPSYSPTSPSY-SPTSPQYSPTS 1666
Score = 100 bits (250), Expect = 5e-20
Identities = 64/161 (39%), Positives = 86/161 (53%), Gaps = 13/161 (8%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP +P SP SP Y+ SP + + + +Y+P SP+Y TSPG YS
Sbjct: 1582 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPG--YS 1628
Query: 257 PSTPALAVSSPGYSP---GYSPTSPSVGARG---GPAAGYASPQSPGYVPTSPAYARPGT 418
P++P+ + +SP YSP YSPTSPS P + SP SP Y PTSP+Y+
Sbjct: 1629 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPQYSPTSPSYSPTSPQYSPTSPSYSPTSP 1688
Query: 419 VVAAANV-YSPSSPAYSPFSPNYAAAS------SPAYQPPS 520
+ + YSP+SP YSP SP Y+ S SP Y+P S
Sbjct: 1689 QYSPTSPSYSPTSPQYSPTSPQYSPTSPRYSPGSPGYEPKS 1729
Score = 93.2 bits (230), Expect = 1e-17
Identities = 71/177 (40%), Positives = 90/177 (50%), Gaps = 4/177 (2%)
Frame = +2
Query: 2 INATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGY-AAMSPRFGGGLGG 178
I+A A FSPI ++ G G + G P SP S GY A SP
Sbjct: 1486 IDAGAGFSPIHTAQVNEG-IVGGLTSYGGQPTS--PAATSPFSFGYNTATSP-------- 1534
Query: 179 GPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPA 349
G A Y+P SP+Y TSP YSP++P+ + +SP YSP YSPTSPS
Sbjct: 1535 GYASPGYGYSPTSPSYSPTSPS--YSPTSPSYSPTSPSYSPTSPSYSPTSPSY------- 1585
Query: 350 AGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
SP SP Y PTSP+Y+ + YSP+SP+YSP SP+Y + +SP Y P S
Sbjct: 1586 ----SPTSPSYSPTSPSYS------PTSPSYSPTSPSYSPTSPSY-SPTSPGYSPTS 1631
Score = 89.0 bits (219), Expect = 2e-16
Identities = 56/138 (40%), Positives = 73/138 (52%), Gaps = 4/138 (2%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP +P SP SPGY+ SP + + + +Y+P SP+Y TSP YS
Sbjct: 1610 SPSYSPT---SPSYSPTSPGYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 1656
Query: 257 PSTPALAVSSPGYSPG---YSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVA 427
P++P + +SP YSP YSPTSPS P + SP SP Y PTSP Y+ +
Sbjct: 1657 PTSPQYSPTSPSYSPTSPQYSPTSPSYS----PTSPQYSPTSPSYSPTSPQYSPTSPQYS 1712
Query: 428 AANV-YSPSSPAYSPFSP 478
+ YSP SP Y P SP
Sbjct: 1713 PTSPRYSPGSPGYEPKSP 1730
Score = 53.9 bits (128), Expect = 7e-06
Identities = 35/103 (33%), Positives = 48/103 (46%), Gaps = 3/103 (2%)
Frame = +2
Query: 23 SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
SP S + T + +P +P+ SP SP Y+ SP+
Sbjct: 1645 SPSYSPTSPSYSPTSPQYSPTSPSYSPTSPQYSPTSPSYSPTSPQ--------------- 1689
Query: 203 YAPASPAYMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSP 322
Y+P SP+Y TSP YSP++P + +SP Y SPGY P SP
Sbjct: 1690 YSPTSPSYSPTSP--QYSPTSPQYSPTSPRYSPGSPGYEPKSP 1730
[36][TOP]
>UniRef100_UPI0000F24379 DNA-directed RNA polymerase II largest subunit (RNA polymerase II
subunit 1) (B220) n=1 Tax=Pichia stipitis CBS 6054
RepID=UPI0000F24379
Length = 1739
Score = 109 bits (272), Expect = 1e-22
Identities = 70/175 (40%), Positives = 98/175 (56%), Gaps = 6/175 (3%)
Frame = +2
Query: 14 ASFSPIMSSA--DAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPA 187
A FSPI ++ D +G T S G+ T + + Y + SP FGG + G
Sbjct: 1493 AGFSPIHTAQVQDVSGGLT--------SYGGQPTSPSATSPFSYGSTSPSFGGSVSPGYG 1544
Query: 188 GGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGY 358
G + +Y+P SP+Y TSP YSP++P+ + +SP Y SP YSPTSPS P +
Sbjct: 1545 GTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPAYSPTSPSYSPTSPSY----SPTSPS 1598
Query: 359 ASPQSPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
SP SP Y PTSP+Y+ + + YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1599 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 1652
Score = 108 bits (270), Expect = 2e-22
Identities = 71/177 (40%), Positives = 98/177 (55%), Gaps = 5/177 (2%)
Frame = +2
Query: 5 NATASFSPIMSSADAAGRATPGR--MTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGG 178
+AT+ FS +S G +PG +P SP +P SP SP Y+ SP +
Sbjct: 1521 SATSPFSYGSTSPSFGGSVSPGYGGTSPSYSPT---SPSYSPTSPSYSPTSPSY------ 1571
Query: 179 GPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPA 349
+ + AY+P SP+Y TSP YSP++P+ + +SP YSP YSPTSPS P
Sbjct: 1572 --SPTSPAYSPTSPSYSPTSPS--YSPTSPSYSPTSPSYSPTSPSYSPTSPSYS----PT 1623
Query: 350 AGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
+ SP SP Y PTSP+Y+ + YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1624 SPSYSPTSPSYSPTSPSYS------PTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 1673
Score = 99.8 bits (247), Expect = 1e-19
Identities = 65/170 (38%), Positives = 86/170 (50%), Gaps = 4/170 (2%)
Frame = +2
Query: 23 SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
SP S A T +P +P SP SP Y+ SP + + + +
Sbjct: 1568 SPSYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP-TSPSYSPTSPS 1626
Query: 203 YAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQS 373
Y+P SP+Y TSP YSP++P+ + +SP YSP YSPTSPS P + SP S
Sbjct: 1627 YSPTSPSYSPTSPS--YSPTSPSYSPTSPSYSPTSPSYSPTSPSYS----PTSPSYSPTS 1680
Query: 374 PGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
P Y PTSP Y+ + + +YSP+SP YSP SP Y + SP Y P S
Sbjct: 1681 PSYSPTSPQYSPTSPQYSPTSPLYSPTSPQYSPTSPQY-SPGSPEYSPNS 1729
Score = 88.6 bits (218), Expect = 2e-16
Identities = 56/138 (40%), Positives = 74/138 (53%), Gaps = 4/138 (2%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP +P SP SP Y+ SP + + + +Y+P SP+Y TSP YS
Sbjct: 1610 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 1656
Query: 257 PSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVA 427
P++P+ + +SP YSP YSPTSPS P + SP SP Y PTSP Y+ +
Sbjct: 1657 PTSPSYSPTSPSYSPTSPSYSPTSPSYS----PTSPQYSPTSPQYSPTSPLYSPTSPQYS 1712
Query: 428 AANV-YSPSSPAYSPFSP 478
+ YSP SP YSP SP
Sbjct: 1713 PTSPQYSPGSPEYSPNSP 1730
[37][TOP]
>UniRef100_UPI0001951285 220 kDa DNA-directed RNA polymerase polypeptide A n=1 Tax=Canis lupus
familiaris RepID=UPI0001951285
Length = 1969
Score = 109 bits (272), Expect = 1e-22
Identities = 73/187 (39%), Positives = 98/187 (52%), Gaps = 18/187 (9%)
Frame = +2
Query: 14 ASFSPIMSSADAAGRATPGRMTPGR----SPAGRFTPRMSPASPGYAAMSPRFGGGLGGG 181
+ FSP S A + +PG P SP G +P SP SP Y SP GG
Sbjct: 1555 SGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSP--GGYTPQS 1612
Query: 182 PAGG--AGAYAPASPAYMATSPGMG-----YSPSTPALAVSSPGYSP---GYSPTSPSVG 331
P+ + +Y+P SP+Y TSP YSP++P+ + +SP YSP YSPTSPS
Sbjct: 1613 PSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1672
Query: 332 ARG---GPAAGYASPQSPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASS 499
P + SP SP Y PTSP+Y+ + + YSP+SP+YSP SP+Y + +S
Sbjct: 1673 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTS 1731
Query: 500 PAYQPPS 520
P+Y P S
Sbjct: 1732 PSYSPTS 1738
Score = 106 bits (264), Expect = 1e-21
Identities = 74/174 (42%), Positives = 100/174 (57%), Gaps = 5/174 (2%)
Frame = +2
Query: 14 ASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAA-MSPRFGGGLGGGPAG 190
A FSP +S DA+G +PG SPA TP SP SPG ++ P GG +
Sbjct: 1544 AGFSPSAAS-DASG------FSPGYSPAWSPTPG-SPGSPGPSSPYIPSPGGAM------ 1589
Query: 191 GAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYA 361
+ +Y+P SPAY SPG GY+P +P+ + +SP YSP YSPTSP+ P +
Sbjct: 1590 -SPSYSPTSPAYEPRSPG-GYTPQSPSYSPTSPSYSPTSPSYSPTSPNYS----PTSPSY 1643
Query: 362 SPQSPGYVPTSPAYARPGTVVAAANV-YSPSSPAYSPFSPNYAAASSPAYQPPS 520
SP SP Y PTSP+Y+ + + YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1644 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 1696
Score = 105 bits (263), Expect = 1e-21
Identities = 67/172 (38%), Positives = 95/172 (55%), Gaps = 4/172 (2%)
Frame = +2
Query: 17 SFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGA 196
S+SP ++ A +PG TP +P SP SP Y+ SP + + +
Sbjct: 1592 SYSP---TSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNY--------SPTS 1640
Query: 197 GAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASP 367
+Y+P SP+Y TSP YSP++P+ + +SP YSP YSPTSPS P + SP
Sbjct: 1641 PSYSPTSPSYSPTSPS--YSPTSPSYSPTSPSYSPTSPSYSPTSPSY----SPTSPSYSP 1694
Query: 368 QSPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
SP Y PTSP+Y+ + + YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1695 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 1745
Score = 99.4 bits (246), Expect = 1e-19
Identities = 74/182 (40%), Positives = 97/182 (53%), Gaps = 18/182 (9%)
Frame = +2
Query: 29 IMSSADAAGRATPGRMTPGR--SPAGRFTPRMSP----ASPGYAAMSPRFGGGLGGGPAG 190
I ++ G A P M G SP G +P M+P A+P Y A SP G G+ G AG
Sbjct: 1486 IPTNIPGLGAAGPTGMFFGSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGSGMTPGAAG 1545
Query: 191 -------GAGAYAPA-SPAYMATSPGMGYSPSTPALAVSSPG--YSPGYSPTSPSVGARG 340
A ++P SPA+ T PG SP + + SPG SP YSPTSP+ R
Sbjct: 1546 FSPSAASDASGFSPGYSPAWSPT-PGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPR- 1603
Query: 341 GPAAGYASPQSPGYVPTSPAYA--RPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQP 514
+ G +PQSP Y PTSP+Y+ P + N YSP+SP+YSP SP+Y + +SP+Y P
Sbjct: 1604 --SPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPN-YSPTSPSYSPTSPSY-SPTSPSYSP 1659
Query: 515 PS 520
S
Sbjct: 1660 TS 1661
Score = 97.1 bits (240), Expect = 7e-19
Identities = 61/154 (39%), Positives = 83/154 (53%), Gaps = 6/154 (3%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP +P SP SP Y+ SP + + + +Y+P SP+Y TSP YS
Sbjct: 1675 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 1721
Query: 257 PSTPALAVSSPGYSP---GYSPTSPSVGARGG---PAAGYASPQSPGYVPTSPAYARPGT 418
P++P+ + +SP YSP YSPTSP+ P + SP SP Y PTSP Y
Sbjct: 1722 PTSPSYSPTSPSYSPTSPSYSPTSPNYSPSRPNYTPTSPSYSPTSPSYSPTSPNYTPMSP 1781
Query: 419 VVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
+ + SP+SP+YSP SP+Y + SSP Y P S
Sbjct: 1782 NYSPTSPNSPTSPSYSPTSPSY-SPSSPRYTPQS 1814
Score = 97.1 bits (240), Expect = 7e-19
Identities = 64/161 (39%), Positives = 83/161 (51%), Gaps = 13/161 (8%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP +P SP SP Y+ SP + + + +Y+P SP+Y TSP YS
Sbjct: 1703 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPN--YS 1749
Query: 257 PSTPALAVSSPGYSP---GYSPTSP---------SVGARGGPAAGYASPQSPGYVPTSPA 400
PS P +SP YSP YSPTSP S + P + SP SP Y P+SP
Sbjct: 1750 PSRPNYTPTSPSYSPTSPSYSPTSPNYTPMSPNYSPTSPNSPTSPSYSPTSPSYSPSSPR 1809
Query: 401 YA-RPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
Y + T ++ YSPSSP+YSP SP Y +SP+Y P S
Sbjct: 1810 YTPQSPTYTPSSPSYSPSSPSYSPTSPKY-TPTSPSYSPSS 1849
Score = 96.7 bits (239), Expect = 9e-19
Identities = 60/154 (38%), Positives = 81/154 (52%), Gaps = 6/154 (3%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP +P SP SP Y+ SP + + + +Y+P SP+Y TSP YS
Sbjct: 1689 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 1735
Query: 257 PSTPALAVSSPGYSPG---YSPTSPSVGARG---GPAAGYASPQSPGYVPTSPAYARPGT 418
P++P+ + +SP YSP Y+PTSPS P + +P SP Y PTSP +
Sbjct: 1736 PTSPSYSPTSPNYSPSRPNYTPTSPSYSPTSPSYSPTSPNYTPMSPNYSPTSPNSPTSPS 1795
Query: 419 VVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
+ YSPSSP Y+P SP Y SSP+Y P S
Sbjct: 1796 YSPTSPSYSPSSPRYTPQSPTY-TPSSPSYSPSS 1828
Score = 94.0 bits (232), Expect = 6e-18
Identities = 64/177 (36%), Positives = 85/177 (48%), Gaps = 11/177 (6%)
Frame = +2
Query: 23 SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYA-------AMSPRFGGGLGGG 181
SP S + T +P R +P SP SP Y+ MSP +
Sbjct: 1731 SPSYSPTSPSYSPTSPNYSPSRPNYTPTSPSYSPTSPSYSPTSPNYTPMSPNYSPTSPNS 1790
Query: 182 PAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPSVGARGGPAA 352
P + +Y+P SP+Y +SP Y+P +P SSP Y SP YSPTSP + P +
Sbjct: 1791 PT--SPSYSPTSPSYSPSSP--RYTPQSPTYTPSSPSYSPSSPSYSPTSP----KYTPTS 1842
Query: 353 GYASPQSPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
SP SP Y PTSP Y+ + + YSP+SP YSP +P Y + +SP Y P S
Sbjct: 1843 PSYSPSSPEYTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKY-SPTSPTYSPTS 1898
Score = 94.0 bits (232), Expect = 6e-18
Identities = 67/181 (37%), Positives = 94/181 (51%), Gaps = 13/181 (7%)
Frame = +2
Query: 17 SFSPIMSS-ADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGG 193
S+SP S + ++ R TP +P +P+ +P SP+SP Y+ SP++
Sbjct: 1795 SYSPTSPSYSPSSPRYTP--QSPTYTPS---SPSYSPSSPSYSPTSPKY--------TPT 1841
Query: 194 AGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYAS 364
+ +Y+P+SP Y TSP YSP++P + +SP Y SP YSPT+P + P + S
Sbjct: 1842 SPSYSPSSPEYTPTSP--KYSPTSPKYSPTSPKYSPTSPTYSPTTP----KYSPTSPTYS 1895
Query: 365 PQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAAS---------SPAYQPP 517
P SP Y PTSP Y+ + YSP+SP YSP SP Y+ S SP Y P
Sbjct: 1896 PTSPVYTPTSPKYS------PTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPT 1949
Query: 518 S 520
S
Sbjct: 1950 S 1950
Score = 92.0 bits (227), Expect = 2e-17
Identities = 62/167 (37%), Positives = 81/167 (48%), Gaps = 3/167 (1%)
Frame = +2
Query: 23 SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
SP S + + T + TP +P +P SP Y+ SP+
Sbjct: 1821 SPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYSPTSPK--------------- 1865
Query: 203 YAPASPAYMATSPGMGYSPSTPALAVSSPGYSPG---YSPTSPSVGARGGPAAGYASPQS 373
Y+P SP Y TSP YSP+TP + +SP YSP Y+PTSP + P + SP S
Sbjct: 1866 YSPTSPKYSPTSPT--YSPTTPKYSPTSPTYSPTSPVYTPTSP----KYSPTSPTYSPTS 1919
Query: 374 PGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQP 514
P Y PTSP Y+ + YSP+SP YSP SP Y + +SPA P
Sbjct: 1920 PKYSPTSPTYS---PTSPKGSTYSPTSPGYSPTSPTY-SLTSPAISP 1962
Score = 86.3 bits (212), Expect = 1e-15
Identities = 60/159 (37%), Positives = 79/159 (49%), Gaps = 11/159 (6%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGM--- 247
+P SP +P SP SP Y+ SP + +Y+P SP+Y TSP
Sbjct: 1724 SPSYSPT---SPSYSPTSPSYSPTSPNYSPSRPNYTPTSP-SYSPTSPSYSPTSPNYTPM 1779
Query: 248 --GYSPSTPALAVSSPGYSP---GYSPTSPSVGARG---GPAAGYASPQSPGYVPTSPAY 403
YSP++P + +SP YSP YSP+SP + P++ SP SP Y PTSP Y
Sbjct: 1780 SPNYSPTSPN-SPTSPSYSPTSPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKY 1838
Query: 404 ARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
+ YSPSSP Y+P SP Y + +SP Y P S
Sbjct: 1839 ------TPTSPSYSPSSPEYTPTSPKY-SPTSPKYSPTS 1870
[38][TOP]
>UniRef100_C1EA31 DNA-directed RNA polymerase n=1 Tax=Micromonas sp. RCC299
RepID=C1EA31_9CHLO
Length = 1720
Score = 109 bits (272), Expect = 1e-22
Identities = 76/193 (39%), Positives = 98/193 (50%), Gaps = 20/193 (10%)
Frame = +2
Query: 2 INATASFSPIMSSADAAGRATP------GRMTPGRSPAGRFTPRMSPASPGYAAMSPRFG 163
++ TA SP S + + T G +PG SP +P SP SP Y+ SP +
Sbjct: 1493 LSPTAHMSPFDDSMRFSPQGTDYGSHAGGGQSPGYSPT---SPAYSPTSPAYSPTSPAYS 1549
Query: 164 GGLGGGPAGG--AGAYAPASPAYMATSPGMG-----YSPSTPALAVSSPGYSP---GYSP 313
PA + AY+P SPAY TSP YSP++PA + +SP YSP YSP
Sbjct: 1550 PT---SPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSP 1606
Query: 314 TSPSVGARG---GPAAGYASPQSPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPN 481
TSP+ P + SP SP Y PTSPAY+ + + YSP+SPAYSP SP
Sbjct: 1607 TSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPQ 1666
Query: 482 YAAASSPAYQPPS 520
Y + +SP Y P S
Sbjct: 1667 Y-SPTSPQYSPTS 1678
Score = 105 bits (261), Expect = 3e-21
Identities = 68/170 (40%), Positives = 87/170 (51%), Gaps = 4/170 (2%)
Frame = +2
Query: 23 SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
SP S A T +P +P SP SP Y+ SP + + + A
Sbjct: 1538 SPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAY--------SPTSPA 1589
Query: 203 YAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQS 373
Y+P SPAY TSP YSP++PA + +SP YSP YSPTSP+ P + SP S
Sbjct: 1590 YSPTSPAYSPTSPA--YSPTSPAYSPTSPAYSPTSPAYSPTSPAYS----PTSPAYSPTS 1643
Query: 374 PGYVPTSPAYARPGTVVAAANV-YSPSSPAYSPFSPNYAAASSPAYQPPS 520
P Y PTSPAY+ + + YSP+SP YSP SP Y + +SP Y P S
Sbjct: 1644 PAYSPTSPAYSPTSPAYSPTSPQYSPTSPQYSPTSPQY-SPTSPQYSPTS 1692
Score = 96.7 bits (239), Expect = 9e-19
Identities = 64/170 (37%), Positives = 83/170 (48%), Gaps = 4/170 (2%)
Frame = +2
Query: 23 SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
SP S A T +P +P SP SP Y+ SP + + + A
Sbjct: 1552 SPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAY--------SPTSPA 1603
Query: 203 YAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQS 373
Y+P SPAY TSP YSP++PA + +SP YSP YSPTSP+ P + SP S
Sbjct: 1604 YSPTSPAYSPTSPA--YSPTSPAYSPTSPAYSPTSPAYSPTSPAYS----PTSPAYSPTS 1657
Query: 374 PGYVPTSPAYARPGTVVAAANV-YSPSSPAYSPFSPNYAAASSPAYQPPS 520
P Y PTSP Y+ + + YSP+SP YSP S + A +P P S
Sbjct: 1658 PAYSPTSPQYSPTSPQYSPTSPQYSPTSPQYSPTSLGLSDADAPTRSPTS 1707
Score = 91.3 bits (225), Expect = 4e-17
Identities = 69/161 (42%), Positives = 86/161 (53%), Gaps = 8/161 (4%)
Frame = +2
Query: 62 TPGR-MTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAG---GAGAYAPASPAYM 229
TPGR +TPGR A + +SP A MSP F + P G G+ A SP
Sbjct: 1474 TPGRGITPGREGAMSPSFLLSPT----AHMSP-FDDSMRFSPQGTDYGSHAGGGQSP--- 1525
Query: 230 ATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPA 400
GYSP++PA + +SP Y SP YSPTSP+ P + SP SP Y PTSPA
Sbjct: 1526 ------GYSPTSPAYSPTSPAYSPTSPAYSPTSPAY----SPTSPAYSPTSPAYSPTSPA 1575
Query: 401 YARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
Y+ + + YSP+SPAYSP SP Y + +SPAY P S
Sbjct: 1576 YSPTSPAYSPTSPAYSPTSPAYSPTSPAY-SPTSPAYSPTS 1615
Score = 89.0 bits (219), Expect = 2e-16
Identities = 61/154 (39%), Positives = 75/154 (48%), Gaps = 5/154 (3%)
Frame = +2
Query: 23 SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
SP S A T +P +P SP SP Y+ SP + + + A
Sbjct: 1573 SPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAY--------SPTSPA 1624
Query: 203 YAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQS 373
Y+P SPAY TSP YSP++PA + +SP YSP YSPTSP P + SP S
Sbjct: 1625 YSPTSPAYSPTSPA--YSPTSPAYSPTSPAYSPTSPAYSPTSPQYS----PTSPQYSPTS 1678
Query: 374 PGYVPTSPAYARP--GTVVAAANVYSPSSPAYSP 469
P Y PTSP Y+ G A A SP+SP YSP
Sbjct: 1679 PQYSPTSPQYSPTSLGLSDADAPTRSPTSPQYSP 1712
Score = 65.5 bits (158), Expect = 2e-09
Identities = 49/134 (36%), Positives = 63/134 (47%), Gaps = 8/134 (5%)
Frame = +2
Query: 23 SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
SP S A T +P +P SP SP Y+ SP + + + A
Sbjct: 1594 SPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAY--------SPTSPA 1645
Query: 203 YAPASPAYMATSPGMGYSPSTPALAVSSPGYSPG---YSPTSP-----SVGARGGPAAGY 358
Y+P SPAY TSP YSP++P + +SP YSP YSPTSP S+G A
Sbjct: 1646 YSPTSPAYSPTSPA--YSPTSPQYSPTSPQYSPTSPQYSPTSPQYSPTSLGLSDADAPT- 1702
Query: 359 ASPQSPGYVPTSPA 400
SP SP Y P++ A
Sbjct: 1703 RSPTSPQYSPSTEA 1716
[39][TOP]
>UniRef100_A3GID7 DNA-directed RNA polymerase n=1 Tax=Pichia stipitis
RepID=A3GID7_PICST
Length = 1739
Score = 109 bits (272), Expect = 1e-22
Identities = 70/175 (40%), Positives = 98/175 (56%), Gaps = 6/175 (3%)
Frame = +2
Query: 14 ASFSPIMSSA--DAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPA 187
A FSPI ++ D +G T S G+ T + + Y + SP FGG + G
Sbjct: 1493 AGFSPIHTAQVQDVSGGLT--------SYGGQPTSPSATSPFSYGSTSPSFGGSVSPGYG 1544
Query: 188 GGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGY 358
G + +Y+P SP+Y TSP YSP++P+ + +SP Y SP YSPTSPS P +
Sbjct: 1545 GTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPAYSPTSPSYSPTSPSY----SPTSPS 1598
Query: 359 ASPQSPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
SP SP Y PTSP+Y+ + + YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1599 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 1652
Score = 108 bits (270), Expect = 2e-22
Identities = 71/177 (40%), Positives = 98/177 (55%), Gaps = 5/177 (2%)
Frame = +2
Query: 5 NATASFSPIMSSADAAGRATPGR--MTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGG 178
+AT+ FS +S G +PG +P SP +P SP SP Y+ SP +
Sbjct: 1521 SATSPFSYGSTSPSFGGSVSPGYGGTSPSYSPT---SPSYSPTSPSYSPTSPSY------ 1571
Query: 179 GPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPA 349
+ + AY+P SP+Y TSP YSP++P+ + +SP YSP YSPTSPS P
Sbjct: 1572 --SPTSPAYSPTSPSYSPTSPS--YSPTSPSYSPTSPSYSPTSPSYSPTSPSYS----PT 1623
Query: 350 AGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
+ SP SP Y PTSP+Y+ + YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1624 SPSYSPTSPSYSPTSPSYS------PTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 1673
Score = 100 bits (250), Expect = 5e-20
Identities = 65/170 (38%), Positives = 88/170 (51%), Gaps = 4/170 (2%)
Frame = +2
Query: 23 SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
SP S A T +P +P SP SP Y+ SP + + + +
Sbjct: 1568 SPSYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY--------SPTSPS 1619
Query: 203 YAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQS 373
Y+P SP+Y TSP YSP++P+ + +SP YSP YSPTSPS P + SP S
Sbjct: 1620 YSPTSPSYSPTSPS--YSPTSPSYSPTSPSYSPTSPSYSPTSPSYS----PTSPSYSPTS 1673
Query: 374 PGYVPTSPAYARPGTVVAAANV-YSPSSPAYSPFSPNYAAASSPAYQPPS 520
P Y PTSP+Y+ + + YSP+SP+YSP SP Y + +SP Y P S
Sbjct: 1674 PSYSPTSPSYSPTSPQYSPTSPQYSPTSPSYSPTSPQY-SPTSPQYSPGS 1722
Score = 92.8 bits (229), Expect = 1e-17
Identities = 58/143 (40%), Positives = 78/143 (54%), Gaps = 3/143 (2%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP +P SP SP Y+ SP + + + +Y+P SP+Y TSP YS
Sbjct: 1610 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 1656
Query: 257 PSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVA 427
P++P+ + +SP YSP YSPTSPS P + SP SP Y PTSP+Y+
Sbjct: 1657 PTSPSYSPTSPSYSPTSPSYSPTSPSYS----PTSPQYSPTSPQYSPTSPSYS------P 1706
Query: 428 AANVYSPSSPAYSPFSPNYAAAS 496
+ YSP+SP YSP SP Y+ S
Sbjct: 1707 TSPQYSPTSPQYSPGSPEYSPNS 1729
Score = 68.6 bits (166), Expect = 3e-10
Identities = 44/113 (38%), Positives = 59/113 (52%), Gaps = 6/113 (5%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP +P SP SP Y+ SP + + + +Y+P SP+Y TSP YS
Sbjct: 1631 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 1677
Query: 257 PSTPALAVSSPGYSPG---YSPTSPSVGARG---GPAAGYASPQSPGYVPTSP 397
P++P+ + +SP YSP YSPTSPS P + SP SP Y P SP
Sbjct: 1678 PTSPSYSPTSPQYSPTSPQYSPTSPSYSPTSPQYSPTSPQYSPGSPEYSPNSP 1730
[40][TOP]
>UniRef100_UPI000051AA8E PREDICTED: similar to DNA-directed RNA polymerase II largest
subunit (RPB1) n=1 Tax=Apis mellifera
RepID=UPI000051AA8E
Length = 452
Score = 108 bits (271), Expect = 2e-22
Identities = 81/201 (40%), Positives = 104/201 (51%), Gaps = 30/201 (14%)
Frame = +2
Query: 8 ATASFSPIMS---------SADAAGRATPGRMTPGR---SPAGRFTPRMSPASPGYAAMS 151
AT S SP M+ A + A MTPG SP+G S SP Y+A S
Sbjct: 47 ATPSMSPQMTPWMGATPGYGASSMSPALGSGMTPGGACFSPSG--ASDASGLSPAYSAYS 104
Query: 152 PRFGGGLGGGP---------AGGAG-AYAPASPAYMATSPGM-----GYSPSTPALAVSS 286
P+ G GP AGGA +Y+P SPAY+ TSP + YSP++P + +S
Sbjct: 105 PQPGSPGSPGPSMSPYPMSPAGGASPSYSPTSPAYLPTSPSITPSSPNYSPTSPTYSPTS 164
Query: 287 PGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSP 457
P YSP YSPTSPS P + SP SP Y PTSP+Y+ + YSP+SP
Sbjct: 165 PNYSPTSPSYSPTSPSYS----PTSPSYSPTSPSYSPTSPSYS------PTSPSYSPTSP 214
Query: 458 AYSPFSPNYAAASSPAYQPPS 520
+YSP SP+Y + +SP+Y P S
Sbjct: 215 SYSPTSPSY-SPTSPSYSPTS 234
Score = 105 bits (262), Expect = 2e-21
Identities = 68/175 (38%), Positives = 90/175 (51%), Gaps = 9/175 (5%)
Frame = +2
Query: 23 SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
SP S A T +TP +P SP SP Y+ SP + + + +
Sbjct: 129 SPSYSPTSPAYLPTSPSITPSSPNYSPTSPTYSPTSPNYSPTSPSYSP-TSPSYSPTSPS 187
Query: 203 YAPASPAYMATSPGMG-----YSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGY 358
Y+P SP+Y TSP YSP++P+ + +SP YSP YSPTSPS P +
Sbjct: 188 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY----SPTSPS 243
Query: 359 ASPQSPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
SP SP Y PTSP+Y+ + + YSP+SP+YSP SPNY A SP+Y P S
Sbjct: 244 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPNYTPA-SPSYSPTS 297
Score = 100 bits (248), Expect = 8e-20
Identities = 64/169 (37%), Positives = 85/169 (50%), Gaps = 21/169 (12%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP +P SP SP Y+ SP + + + +Y+P SP+Y TSP YS
Sbjct: 227 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 273
Query: 257 PSTPALAVSSPGY---SPGYSPTSPSVGARG---GPAAGYASPQSPGYVPTSPAYARPGT 418
P++P+ + SSP Y SP YSPTSPS PA+ SP SP Y PTSP+Y+
Sbjct: 274 PTSPSYSPSSPNYTPASPSYSPTSPSYSPSSPQYSPASPSYSPSSPKYSPTSPSYSPTSP 333
Query: 419 VVAAAN---------------VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
A + YSP+SP+YSP SP + A+ S Y P S
Sbjct: 334 SFAGTSPQYTPASPTYSPTSPTYSPTSPSYSPSSPQHTASGSTRYSPSS 382
Score = 99.4 bits (246), Expect = 1e-19
Identities = 70/183 (38%), Positives = 96/183 (52%), Gaps = 15/183 (8%)
Frame = +2
Query: 8 ATASFSPIMSS-ADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGP 184
A+ S+SP S + ++ + +P +P SP+ +P+ SP SP Y+ SP F
Sbjct: 289 ASPSYSPTSPSYSPSSPQYSPA--SPSYSPS---SPKYSPTSPSYSPTSPSF-------- 335
Query: 185 AGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY-----------SPGYSPTSPSVG 331
AG + Y PASP Y TSP YSP++P+ + SSP + SP YSPTSP+
Sbjct: 336 AGTSPQYTPASPTYSPTSPT--YSPTSPSYSPSSPQHTASGSTRYSPSSPNYSPTSPTYS 393
Query: 332 ARG---GPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSP 502
P++ SP SP Y PTSP+Y+ + YSP P YSP SP Y+ A SP
Sbjct: 394 PTSPQYSPSSTKYSPTSPTYTPTSPSYS------PTSPTYSPPVPGYSPTSPTYSPA-SP 446
Query: 503 AYQ 511
AY+
Sbjct: 447 AYE 449
Score = 99.4 bits (246), Expect = 1e-19
Identities = 61/154 (39%), Positives = 88/154 (57%), Gaps = 7/154 (4%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP+ +P+ SPASP Y+ SP++ + + +Y+P SP++ TSP Y+
Sbjct: 297 SPSYSPS---SPQYSPASPSYSPSSPKY--------SPTSPSYSPTSPSFAGTSPQ--YT 343
Query: 257 PSTPALAVSSPGYSP---GYSPTSPSVGARGG----PAAGYASPQSPGYVPTSPAYARPG 415
P++P + +SP YSP YSP+SP A G P++ SP SP Y PTSP Y+
Sbjct: 344 PASPTYSPTSPTYSPTSPSYSPSSPQHTASGSTRYSPSSPNYSPTSPTYSPTSPQYSPSS 403
Query: 416 TVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPP 517
T YSP+SP Y+P SP+Y + +SP Y PP
Sbjct: 404 T------KYSPTSPTYTPTSPSY-SPTSPTYSPP 430
Score = 94.7 bits (234), Expect = 3e-18
Identities = 66/162 (40%), Positives = 82/162 (50%), Gaps = 14/162 (8%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP +P SP SP Y+ SP + + + Y PASP+Y TSP YS
Sbjct: 255 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPSSPNYTPASPSYSPTSPS--YS 301
Query: 257 PSTPALAVSSPGYSPG---YSPTSPSVGARGGPAAGYA---SPQSPGYVPTSPAYARPGT 418
PS+P + +SP YSP YSPTSPS AG + +P SP Y PTSP Y+
Sbjct: 302 PSSPQYSPASPSYSPSSPKYSPTSPSYSPTSPSFAGTSPQYTPASPTYSPTSPTYS---- 357
Query: 419 VVAAANVYSPSSP--------AYSPFSPNYAAASSPAYQPPS 520
+ YSPSSP YSP SPNY + +SP Y P S
Sbjct: 358 --PTSPSYSPSSPQHTASGSTRYSPSSPNY-SPTSPTYSPTS 396
[41][TOP]
>UniRef100_B9FZ51 DNA-directed RNA polymerase n=1 Tax=Oryza sativa Japonica Group
RepID=B9FZ51_ORYSJ
Length = 1526
Score = 108 bits (271), Expect = 2e-22
Identities = 72/182 (39%), Positives = 98/182 (53%), Gaps = 14/182 (7%)
Frame = +2
Query: 17 SFSPIMS---SADAAGRATPGRMT----PGRSPAGRFTPRMSPASPGYAAMSPRFGGGLG 175
+FSP+ S + + G +P PG SP +P SPASP Y+ SP +
Sbjct: 1205 AFSPVPSPGYTPSSGGGYSPSSPVYSPGPGYSPT---SPSYSPASPSYSPTSPSY----- 1256
Query: 176 GGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARG-- 340
G+ Y+P SP+Y TSP YSP++P+ + +SP YSP YSPTSPS
Sbjct: 1257 ---TPGSPTYSPTSPSYSPTSPS--YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1311
Query: 341 -GPAAGYASPQSPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQP 514
P + SP SP Y PTSPAY+ + + YSP+SP+YSP SP+Y + +SP+Y P
Sbjct: 1312 YSPTSPVYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSP 1370
Query: 515 PS 520
S
Sbjct: 1371 TS 1372
Score = 104 bits (259), Expect = 4e-21
Identities = 67/173 (38%), Positives = 89/173 (51%), Gaps = 7/173 (4%)
Frame = +2
Query: 23 SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
SP S A + T TPG +P SP SP Y+ SP +
Sbjct: 1239 SPSYSPASPSYSPTSPSYTPGSPTYSPTSPSYSPTSPSYSPTSP---------------S 1283
Query: 203 YAPASPAYMATSPGMGYSPSTPALAVSSPGYSPG---YSPTSPSVGARG---GPAAGYAS 364
Y+P SP+Y TSP YSP++P+ + +SP YSP YSPTSP+ P + S
Sbjct: 1284 YSPTSPSYSPTSPS--YSPTSPSYSPTSPSYSPTSPVYSPTSPAYSPTSPAYSPTSPSYS 1341
Query: 365 PQSPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
P SP Y PTSP+Y+ + + YSP+SP+YSP SP+Y + +SPAY P S
Sbjct: 1342 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPAYSPTS 1393
Score = 102 bits (253), Expect = 2e-20
Identities = 68/172 (39%), Positives = 90/172 (52%), Gaps = 6/172 (3%)
Frame = +2
Query: 23 SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
SP+ S A T +P SP +P SP SP Y+ SP + + + +
Sbjct: 1316 SPVYSPTSPAYSPT----SPAYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPS 1360
Query: 203 YAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQS 373
Y+P SP+Y TSP YSP++P+ + +SP YSP GYSPTSPS SP S
Sbjct: 1361 YSPTSPSYSPTSPS--YSPTSPSYSPTSPAYSPTSPGYSPTSPSY-----------SPTS 1407
Query: 374 PGYVPTSPAYARPGTVVAAANVYSPSSPAYSPF---SPNYAAASSPAYQPPS 520
P Y PTSP+Y + ++ YSPSSP SP+ SPNY + +SP Y P S
Sbjct: 1408 PNYSPTSPSYNPSSAKYSPSHAYSPSSPRLSPYSQTSPNY-SPTSPTYSPTS 1458
Score = 94.0 bits (232), Expect = 6e-18
Identities = 67/170 (39%), Positives = 86/170 (50%), Gaps = 21/170 (12%)
Frame = +2
Query: 74 MTPGRSPAGRFTPRMSPASPGY-------------AAMSPRFGG-------GLGGGPAGG 193
MTP RSP SP Y A SP GG G P+ G
Sbjct: 1160 MTPARSPISGTPYHEGMMSPSYLLSPNIRASPITDAQFSPYVGGMAFSPVPSPGYTPSSG 1219
Query: 194 AGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSPGYSPTSPSVGARGGPAAGYASPQS 373
G Y+P+SP Y SPG GYSP++P+ + +SP YS PTSPS P + SP S
Sbjct: 1220 GG-YSPSSPVY---SPGPGYSPTSPSYSPASPSYS----PTSPSY----TPGSPTYSPTS 1267
Query: 374 PGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
P Y PTSP+Y+ + + YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1268 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 1316
Score = 80.5 bits (197), Expect = 7e-14
Identities = 61/159 (38%), Positives = 78/159 (49%), Gaps = 6/159 (3%)
Frame = +2
Query: 17 SFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGA 196
S+SP S A +PG SP +P SP SP Y+ SP + +
Sbjct: 1374 SYSPTSPSYSPTSPAY-SPTSPGYSPT---SPSYSPTSPNYSPTSPSYNPS--SAKYSPS 1427
Query: 197 GAYAPASPA---YMATSPGMGYSPSTPALAVSSPGYS---PGYSPTSPSVGARGGPAAGY 358
AY+P+SP Y TSP YSP++P + +SP YS P YSPTSP + GGP
Sbjct: 1428 HAYSPSSPRLSPYSQTSPN--YSPTSPTYSPTSPSYSQPSPSYSPTSPYTTS-GGP---- 1480
Query: 359 ASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFS 475
SP Y PTSP Y+ G+ YSP++P YSP S
Sbjct: 1481 ----SPDYSPTSPNYSPSGS-------YSPTAPGYSPSS 1508
[42][TOP]
>UniRef100_O00820 DNA-directed RNA polymerase (Fragment) n=1 Tax=Acanthamoeba
castellanii RepID=O00820_ACACA
Length = 1569
Score = 108 bits (271), Expect = 2e-22
Identities = 70/165 (42%), Positives = 90/165 (54%), Gaps = 17/165 (10%)
Frame = +2
Query: 71 RMTPGRSPAGRFTPRM--------------SPASPGYAAMSPRFGGGLGGGPAGGAGAYA 208
RM+PG +PA ++P + SP+SP Y+ SP G PAG Y+
Sbjct: 1432 RMSPGATPAASYSPYVDFGEFSPGRGSFSPSPSSPSYSPASP------GYSPAGAG--YS 1483
Query: 209 PASPAYMATSPGMGYSPSTPALAVSSPGYSPG---YSPTSPSVGARGGPAAGYASPQSPG 379
P+SP Y +SPG YSPS+P + +SPGYSP YSPTSP SP SP
Sbjct: 1484 PSSPGYSPSSPG--YSPSSPGYSPASPGYSPSSPAYSPTSPKY-----------SPASPS 1530
Query: 380 YVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQP 514
Y PTSPAY+ + YSPSSP+YSP SP+Y + +SP+Y P
Sbjct: 1531 YSPTSPAYS------PTSPSYSPSSPSYSPTSPSY-SPTSPSYSP 1568
Score = 108 bits (270), Expect = 2e-22
Identities = 75/174 (43%), Positives = 92/174 (52%), Gaps = 18/174 (10%)
Frame = +2
Query: 53 GRATPGRMTPGRSPAGRFTP---------RMSPASPGYAAMSP-----RFGGGLGG-GPA 187
G +PG TP R+ P RMSP + A+ SP F G G P+
Sbjct: 1403 GATSPGSATPYMGSDERYLPNFFHTTPMYRMSPGATPAASYSPYVDFGEFSPGRGSFSPS 1462
Query: 188 GGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGY 358
+ +Y+PASP Y + G GYSPS+P + SSPGYSP GYSP SP GY
Sbjct: 1463 PSSPSYSPASPGY--SPAGAGYSPSSPGYSPSSPGYSPSSPGYSPASP----------GY 1510
Query: 359 ASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
SP SP Y PTSP Y+ A+ YSP+SPAYSP SP+Y + SSP+Y P S
Sbjct: 1511 -SPSSPAYSPTSPKYS------PASPSYSPTSPAYSPTSPSY-SPSSPSYSPTS 1556
Score = 70.5 bits (171), Expect = 7e-11
Identities = 52/139 (37%), Positives = 69/139 (49%), Gaps = 6/139 (4%)
Frame = +2
Query: 8 ATASFSPIMSSADAAGR----ATPGRM--TPGRSPAGRFTPRMSPASPGYAAMSPRFGGG 169
++ S+SP AG ++PG +PG SP+ +P SPASPGY+ SP
Sbjct: 1464 SSPSYSPASPGYSPAGAGYSPSSPGYSPSSPGYSPS---SPGYSPASPGYSPSSP----- 1515
Query: 170 LGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSPGYSPTSPSVGARGGPA 349
AY+P SP Y SP YSP++PA + + SP YSP+SPS
Sbjct: 1516 ----------AYSPTSPKYSPASP--SYSPTSPAYSPT----SPSYSPSSPSY------- 1552
Query: 350 AGYASPQSPGYVPTSPAYA 406
SP SP Y PTSP+Y+
Sbjct: 1553 ----SPTSPSYSPTSPSYS 1567
Score = 63.5 bits (153), Expect = 8e-09
Identities = 44/108 (40%), Positives = 61/108 (56%), Gaps = 2/108 (1%)
Frame = +2
Query: 8 ATASFSPIMSSADAAGRATPGRM--TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGG 181
A A +SP S+ ++PG +PG SPA +P SP+SP Y+ SP++
Sbjct: 1478 AGAGYSP---SSPGYSPSSPGYSPSSPGYSPA---SPGYSPSSPAYSPTSPKYS------ 1525
Query: 182 PAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSPGYSPTSPS 325
PA + +Y+P SPAY TSP YSPS+P+ + +SP YSP SPS
Sbjct: 1526 PA--SPSYSPTSPAYSPTSPS--YSPSSPSYSPTSPSYSPTSPSYSPS 1569
[43][TOP]
>UniRef100_P16356 DNA-directed RNA polymerase II subunit RPB1 n=1 Tax=Caenorhabditis
elegans RepID=RPB1_CAEEL
Length = 1852
Score = 108 bits (271), Expect = 2e-22
Identities = 70/172 (40%), Positives = 92/172 (53%), Gaps = 6/172 (3%)
Frame = +2
Query: 23 SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
SP S A +P ++P SP +P SP SP Y+ SP + + + +
Sbjct: 1593 SPSYSPTSPAAGQSP--VSPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPS 1639
Query: 203 YAPASPAYMATSPGMGYSPSTPALAVSSPGYSPG---YSPTSPSVGARG---GPAAGYAS 364
Y+P SP+Y TSP YSPS+P+ + SSP YSP YSPTSP+ P + S
Sbjct: 1640 YSPTSPSYSPTSPS--YSPSSPSYSPSSPSYSPSSPRYSPTSPTYSPTSPTYSPTSPTYS 1697
Query: 365 PQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
P SP Y PTSP+Y G ++ YSPSSP YSP SP+Y + +SP Y P S
Sbjct: 1698 PTSPTYSPTSPSYESGGGYSPSSPKYSPSSPTYSPTSPSY-SPTSPQYSPTS 1748
Score = 105 bits (261), Expect = 3e-21
Identities = 77/185 (41%), Positives = 95/185 (51%), Gaps = 25/185 (13%)
Frame = +2
Query: 41 ADAAGRATPGRMTPGR--SPAGRFTPRMSP--------ASPG--YAAMSPRFG--GGLGG 178
A AA T G M+PG SPAG SP ASPG A+SPR GG+
Sbjct: 1513 AGAAWSPTTGGMSPGAGFSPAGNTDGGASPFNEGGWSPASPGDPLGALSPRTPSYGGMSP 1572
Query: 179 GPAGGAGA--------YAPASPAYMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPS 325
G + Y+P SP+Y TSP G SP +P+ + +SP Y SP YSPTSPS
Sbjct: 1573 GVYSPSSPQFSMTSPHYSPTSPSYSPTSPAAGQSPVSPSYSPTSPSYSPTSPSYSPTSPS 1632
Query: 326 VGARGGPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPA 505
P + SP SP Y PTSP+Y+ ++ YSPSSP+YSP SP Y + +SP
Sbjct: 1633 Y----SPTSPSYSPTSPSYSPTSPSYS------PSSPSYSPSSPSYSPSSPRY-SPTSPT 1681
Query: 506 YQPPS 520
Y P S
Sbjct: 1682 YSPTS 1686
Score = 98.2 bits (243), Expect = 3e-19
Identities = 73/196 (37%), Positives = 92/196 (46%), Gaps = 30/196 (15%)
Frame = +2
Query: 23 SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
SP S + T +P +P SP SP Y+ SP + G GG + +
Sbjct: 1665 SPSYSPSSPRYSPTSPTYSPTSPTYSPTSPTYSPTSPTYSPTSPSYESG--GGYSPSSPK 1722
Query: 203 YAPASPAYMATSPGMG-----YSPSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGY 358
Y+P+SP Y TSP YSP++P + SSP Y SP Y+PTSP RG + Y
Sbjct: 1723 YSPSSPTYSPTSPSYSPTSPQYSPTSPQYSPSSPTYTPSSPTYNPTSP----RGFSSPQY 1778
Query: 359 ASPQSPGYVPTSPAYA-------------------RPGTVV---AAANVYSPSSPAYSPF 472
SP SP Y PTSP+Y +PGT + YSPSSP YSP
Sbjct: 1779 -SPTSPTYSPTSPSYTPSSPQYSPTSPTYTPSPSEQPGTSAQYSPTSPTYSPSSPTYSPA 1837
Query: 473 SPNYAAASSPAYQPPS 520
SP+Y + SSP Y P S
Sbjct: 1838 SPSY-SPSSPTYDPNS 1852
[44][TOP]
>UniRef100_UPI00005A0B27 PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide
A isoform 18 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B27
Length = 1831
Score = 108 bits (270), Expect = 2e-22
Identities = 70/162 (43%), Positives = 92/162 (56%), Gaps = 4/162 (2%)
Frame = +2
Query: 47 AAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAY 226
AAGR+ MTPG + G +P SP SP Y SP GG + +Y+P SP+Y
Sbjct: 1492 AAGRSG---MTPGAA-GGAMSPSYSPTSPAYEPRSP-------GGYTPQSPSYSPTSPSY 1540
Query: 227 MATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSP 397
TSP YSP++P + +SP Y SP YSPTSPS P + SP SP Y PTSP
Sbjct: 1541 SPTSP--SYSPTSPNYSPTSPSYSPTSPSYSPTSPSY----SPTSPSYSPTSPSYSPTSP 1594
Query: 398 AYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
+Y+ + + YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1595 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 1635
Score = 105 bits (263), Expect = 1e-21
Identities = 67/172 (38%), Positives = 95/172 (55%), Gaps = 4/172 (2%)
Frame = +2
Query: 17 SFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGA 196
S+SP ++ A +PG TP +P SP SP Y+ SP + + +
Sbjct: 1510 SYSP---TSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNY--------SPTS 1558
Query: 197 GAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASP 367
+Y+P SP+Y TSP YSP++P+ + +SP YSP YSPTSPS P + SP
Sbjct: 1559 PSYSPTSPSYSPTSPS--YSPTSPSYSPTSPSYSPTSPSYSPTSPSY----SPTSPSYSP 1612
Query: 368 QSPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
SP Y PTSP+Y+ + + YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1613 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 1663
Score = 97.4 bits (241), Expect = 5e-19
Identities = 61/154 (39%), Positives = 81/154 (52%), Gaps = 6/154 (3%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP +P SP SP Y+ SP + + + +Y+P SP+Y TSP YS
Sbjct: 1593 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 1639
Query: 257 PSTPALAVSSPGYSP---GYSPTSPSVGARGG---PAAGYASPQSPGYVPTSPAYARPGT 418
P++P+ + +SP YSP YSPTSP+ P + SP SP Y PTSP Y
Sbjct: 1640 PTSPSYSPTSPSYSPTSPSYSPTSPNYSPSRPNYTPTSPSYSPTSPSYSPTSPNYTPMSP 1699
Query: 419 VVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
+ YSPSSP Y+P SP Y + +SP Y P S
Sbjct: 1700 NYSPTPSYSPSSPEYTPTSPKY-SPTSPKYSPTS 1732
Score = 95.9 bits (237), Expect = 2e-18
Identities = 68/170 (40%), Positives = 89/170 (52%), Gaps = 4/170 (2%)
Frame = +2
Query: 17 SFSPIMSS-ADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGG 193
S+SP S + + TP M+P SP TP SP+SP Y SP++ +
Sbjct: 1679 SYSPTSPSYSPTSPNYTP--MSPNYSP----TPSYSPSSPEYTPTSPKY--------SPT 1724
Query: 194 AGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSPG---YSPTSPSVGARGGPAAGYAS 364
+ Y+P SP Y TSP YSP+TP + +SP YSP Y+PTSP + P + S
Sbjct: 1725 SPKYSPTSPKYSPTSPT--YSPTTPKYSPTSPTYSPTSPVYTPTSP----KYSPTSPTYS 1778
Query: 365 PQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQP 514
P SP Y PTSP Y+ + YSP+SP YSP SP Y + +SPA P
Sbjct: 1779 PTSPKYSPTSPTYS---PTSPKGSTYSPTSPGYSPTSPTY-SLTSPAISP 1824
Score = 91.7 bits (226), Expect = 3e-17
Identities = 64/170 (37%), Positives = 78/170 (45%), Gaps = 4/170 (2%)
Frame = +2
Query: 23 SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
SP S + T +P R +P SP SP Y+ SP
Sbjct: 1649 SPSYSPTSPSYSPTSPNYSPSRPNYTPTSPSYSPTSPSYSPTSPN--------------- 1693
Query: 203 YAPASPAYMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYASPQS 373
Y P SP Y SP YSPS+P +SP Y SP YSPTSP + P + SP +
Sbjct: 1694 YTPMSPNY---SPTPSYSPSSPEYTPTSPKYSPTSPKYSPTSP----KYSPTSPTYSPTT 1746
Query: 374 PGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
P Y PTSP Y+ V + YSP+SP YSP SP Y + +SP Y P S
Sbjct: 1747 PKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTSPKY-SPTSPTYSPTS 1795
Score = 55.1 bits (131), Expect = 3e-06
Identities = 37/82 (45%), Positives = 45/82 (54%), Gaps = 12/82 (14%)
Frame = +2
Query: 311 PTS-PSVGARG--GPAAGYAS-PQSPGYVPTSPAY--ARPGTVVAAANVYSPSSPAYSPF 472
PT+ P +GA G G G A SP Y PTSPAY PG + YSP+SP+YSP
Sbjct: 1484 PTNIPGLGAAGRSGMTPGAAGGAMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSPSYSPT 1543
Query: 473 SPNYAAAS------SPAYQPPS 520
SP+Y+ S SP+Y P S
Sbjct: 1544 SPSYSPTSPNYSPTSPSYSPTS 1565
[45][TOP]
>UniRef100_UPI00005A0B19 PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide
A isoform 5 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B19
Length = 1693
Score = 108 bits (270), Expect = 2e-22
Identities = 70/162 (43%), Positives = 92/162 (56%), Gaps = 4/162 (2%)
Frame = +2
Query: 47 AAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAY 226
AAGR+ MTPG + G +P SP SP Y SP GG + +Y+P SP+Y
Sbjct: 1478 AAGRSG---MTPGAA-GGAMSPSYSPTSPAYEPRSP-------GGYTPQSPSYSPTSPSY 1526
Query: 227 MATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSP 397
TSP YSP++P + +SP Y SP YSPTSPS P + SP SP Y PTSP
Sbjct: 1527 SPTSP--SYSPTSPNYSPTSPSYSPTSPSYSPTSPSY----SPTSPSYSPTSPSYSPTSP 1580
Query: 398 AYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
+Y+ + + YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1581 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 1621
Score = 101 bits (251), Expect = 4e-20
Identities = 65/153 (42%), Positives = 85/153 (55%), Gaps = 5/153 (3%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP +P SP SP Y+ SP + + + +Y+P SP+Y TSP YS
Sbjct: 1558 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 1604
Query: 257 PSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYA--RPGTV 421
P++P+ + +SP YSP YSPTSPS P + SP SP Y PTSP Y+ RP
Sbjct: 1605 PTSPSYSPTSPSYSPTSPSYSPTSPSYS----PTSPSYSPTSPSYSPTSPNYSPSRPNYT 1660
Query: 422 VAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
+ + YSP+SP+YSP SPNY SP Y P S
Sbjct: 1661 PTSPS-YSPTSPSYSPTSPNY-TPMSPNYSPTS 1691
Score = 90.1 bits (222), Expect = 8e-17
Identities = 57/140 (40%), Positives = 76/140 (54%), Gaps = 5/140 (3%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP +P SP SP Y+ SP + + + +Y+P SP+Y TSP YS
Sbjct: 1572 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 1618
Query: 257 PSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYA--RPGTV 421
P++P+ + +SP YSP YSPTSPS P + SP P Y PTSP+Y+ P
Sbjct: 1619 PTSPSYSPTSPSYSPTSPSYSPTSPSYS----PTSPNYSPSRPNYTPTSPSYSPTSPSYS 1674
Query: 422 VAAANVYSPSSPAYSPFSPN 481
+ N Y+P SP YSP SPN
Sbjct: 1675 PTSPN-YTPMSPNYSPTSPN 1693
Score = 55.1 bits (131), Expect = 3e-06
Identities = 37/82 (45%), Positives = 45/82 (54%), Gaps = 12/82 (14%)
Frame = +2
Query: 311 PTS-PSVGARG--GPAAGYAS-PQSPGYVPTSPAY--ARPGTVVAAANVYSPSSPAYSPF 472
PT+ P +GA G G G A SP Y PTSPAY PG + YSP+SP+YSP
Sbjct: 1470 PTNIPGLGAAGRSGMTPGAAGGAMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSPSYSPT 1529
Query: 473 SPNYAAAS------SPAYQPPS 520
SP+Y+ S SP+Y P S
Sbjct: 1530 SPSYSPTSPNYSPTSPSYSPTS 1551
[46][TOP]
>UniRef100_C4Y5N3 Putative uncharacterized protein n=1 Tax=Clavispora lusitaniae ATCC
42720 RepID=C4Y5N3_CLAL4
Length = 281
Score = 108 bits (270), Expect = 2e-22
Identities = 63/139 (45%), Positives = 82/139 (58%), Gaps = 5/139 (3%)
Frame = +2
Query: 119 SPASP-GYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 295
SP SP Y SP FGG G G + Y+P SP+Y TSP YSP++P+ + +SP Y
Sbjct: 54 SPTSPFSYGGASPAFGGATSPGYGGTSPTYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 111
Query: 296 ---SPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVAAAN-VYSPSSPAY 463
SP YSPTSPS P + SP SP Y PTSP+Y+ + + YSP+SP+Y
Sbjct: 112 SPTSPSYSPTSPSY----SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 167
Query: 464 SPFSPNYAAASSPAYQPPS 520
SP SP+Y + +SP+Y P S
Sbjct: 168 SPTSPSY-SPTSPSYSPTS 185
Score = 103 bits (257), Expect = 7e-21
Identities = 69/176 (39%), Positives = 97/176 (55%), Gaps = 6/176 (3%)
Frame = +2
Query: 11 TASFSPIMSSADAAGRATPGR--MTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGP 184
T+ FS +S G +PG +P SP +P SP SP Y+ SP +
Sbjct: 56 TSPFSYGGASPAFGGATSPGYGGTSPTYSPT---SPSYSPTSPSYSPTSPSY-------- 104
Query: 185 AGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAG 355
+ + +Y+P SP+Y TSP YSP++P+ + +SP YSP YSPTSPS P +
Sbjct: 105 SPTSPSYSPTSPSYSPTSPS--YSPTSPSYSPTSPSYSPTSPSYSPTSPSYS----PTSP 158
Query: 356 YASPQSPGYVPTSPAYARPGTVVAAANV-YSPSSPAYSPFSPNYAAASSPAYQPPS 520
SP SP Y PTSP+Y+ + + YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 159 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 213
Score = 101 bits (252), Expect = 3e-20
Identities = 64/170 (37%), Positives = 90/170 (52%), Gaps = 4/170 (2%)
Frame = +2
Query: 23 SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
SP S + T +P +P SP SP Y+ SP + + + +
Sbjct: 80 SPTYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY--------SPTSPS 131
Query: 203 YAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQS 373
Y+P SP+Y TSP YSP++P+ + +SP YSP YSPTSPS P + SP S
Sbjct: 132 YSPTSPSYSPTSPS--YSPTSPSYSPTSPSYSPTSPSYSPTSPSYS----PTSPSYSPTS 185
Query: 374 PGYVPTSPAYARPGTVVAAANV-YSPSSPAYSPFSPNYAAASSPAYQPPS 520
P Y PTSP+Y+ + + YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 186 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 234
Score = 101 bits (251), Expect = 4e-20
Identities = 62/152 (40%), Positives = 87/152 (57%), Gaps = 4/152 (2%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP +P SP SP Y+ SP + + + +Y+P SP+Y TSP YS
Sbjct: 115 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 161
Query: 257 PSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVA 427
P++P+ + +SP YSP YSPTSPS P + SP SP Y PTSP+Y+ +
Sbjct: 162 PTSPSYSPTSPSYSPTSPSYSPTSPSYS----PTSPSYSPTSPSYSPTSPSYSPTSPSYS 217
Query: 428 AANV-YSPSSPAYSPFSPNYAAASSPAYQPPS 520
+ YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 218 PTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 248
Score = 99.8 bits (247), Expect = 1e-19
Identities = 62/152 (40%), Positives = 85/152 (55%), Gaps = 4/152 (2%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP +P SP SP Y+ SP + + + +Y+P SP+Y TSP YS
Sbjct: 129 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 175
Query: 257 PSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVA 427
P++P+ + +SP YSP YSPTSPS P + SP SP Y PTSP+Y+ +
Sbjct: 176 PTSPSYSPTSPSYSPTSPSYSPTSPSYS----PTSPSYSPTSPSYSPTSPSYSPTSPSYS 231
Query: 428 AANV-YSPSSPAYSPFSPNYAAASSPAYQPPS 520
+ YSP+SP+YSP SP Y + +SP Y P S
Sbjct: 232 PTSPSYSPTSPSYSPTSPQY-SPTSPQYSPGS 262
Score = 95.5 bits (236), Expect = 2e-18
Identities = 60/148 (40%), Positives = 83/148 (56%), Gaps = 4/148 (2%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP +P SP SP Y+ SP + + + +Y+P SP+Y TSP YS
Sbjct: 143 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 189
Query: 257 PSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVA 427
P++P+ + +SP YSP YSPTSPS P + SP SP Y PTSP+Y+ +
Sbjct: 190 PTSPSYSPTSPSYSPTSPSYSPTSPSYS----PTSPSYSPTSPSYSPTSPSYSPTSPSYS 245
Query: 428 AANV-YSPSSPAYSPFSPNYAAASSPAY 508
+ YSP+SP YSP SP+Y + SP+Y
Sbjct: 246 PTSPQYSPTSPQYSPGSPSY-SPRSPSY 272
Score = 74.3 bits (181), Expect = 5e-12
Identities = 55/141 (39%), Positives = 71/141 (50%), Gaps = 2/141 (1%)
Frame = +2
Query: 104 FTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYM-ATSPGMGYSPSTPALAV 280
FT +S AS + +GG +Y ASPA+ ATSPG G
Sbjct: 32 FTANVSDASGSLTS----YGGQPSMTSPTSPFSYGGASPAFGGATSPGYG---------- 77
Query: 281 SSPGYSPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVAAAN-VYSPSSP 457
G SP YSPTSPS P + SP SP Y PTSP+Y+ + + YSP+SP
Sbjct: 78 ---GTSPTYSPTSPSYS----PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 130
Query: 458 AYSPFSPNYAAASSPAYQPPS 520
+YSP SP+Y + +SP+Y P S
Sbjct: 131 SYSPTSPSY-SPTSPSYSPTS 150
Score = 60.1 bits (144), Expect = 9e-08
Identities = 36/88 (40%), Positives = 49/88 (55%), Gaps = 3/88 (3%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP +P SP SP Y+ SP + + + +Y+P SP+Y TSP YS
Sbjct: 199 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 245
Query: 257 PSTPALAVSSPGYSPG---YSPTSPSVG 331
P++P + +SP YSPG YSP SPS G
Sbjct: 246 PTSPQYSPTSPQYSPGSPSYSPRSPSYG 273
[47][TOP]
>UniRef100_C1H3Q4 DNA-directed RNA polymerase n=1 Tax=Paracoccidioides brasiliensis
Pb01 RepID=C1H3Q4_PARBA
Length = 1748
Score = 108 bits (270), Expect = 2e-22
Identities = 78/203 (38%), Positives = 98/203 (48%), Gaps = 34/203 (16%)
Frame = +2
Query: 14 ASFSPIMSSADAAGRATPGRMT----PG----------RSPAGRFTPRM----------- 118
++FSPI AG TP T PG RSP G ++P
Sbjct: 1530 SAFSPIRQ----AGSETPAGFTEYQAPGFSGGFSPHGARSPGGGYSPSSPFNTSPTSPRY 1585
Query: 119 ------SPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAV 280
SP SPG + SPRF G PA + +AP SPAY TSPG SP++P+ +
Sbjct: 1586 SPSSGYSPTSPGMSITSPRFMSSPGFSPA--SPVFAPTSPAYSPTSPGYQQSPTSPSYSP 1643
Query: 281 SSPGY---SPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPS 451
+SPG+ SP YSPTSPS PA+ SP SP Y PTSPA G+ + SP+
Sbjct: 1644 TSPGFSPTSPNYSPTSPSF----SPASPAFSPTSPSYSPTSPALG--GSTGRHLSPTSPT 1697
Query: 452 SPAYSPFSPNYAAASSPAYQPPS 520
SP Y+P SP ++ S Y P S
Sbjct: 1698 SPKYTPTSPGWSPTSPETYSPTS 1720
Score = 72.8 bits (177), Expect = 1e-11
Identities = 53/143 (37%), Positives = 69/143 (48%), Gaps = 15/143 (10%)
Frame = +2
Query: 23 SPIMSSADAAGRAT-PGRMTPGRSPAGRFT-PRMSPASPGYAAMSPRFGGGLGGGPAGGA 196
SP+ + A T PG SP+ T P SP SP Y+ SP F PA +
Sbjct: 1615 SPVFAPTSPAYSPTSPGYQQSPTSPSYSPTSPGFSPTSPNYSPTSPSFS------PA--S 1666
Query: 197 GAYAPASPAYMATSPGMG---------YSPSTPALAVSSPGYSPG----YSPTSPSVGAR 337
A++P SP+Y TSP +G SP++P +SPG+SP YSPTSP+
Sbjct: 1667 PAFSPTSPSYSPTSPALGGSTGRHLSPTSPTSPKYTPTSPGWSPTSPETYSPTSPNFS-- 1724
Query: 338 GGPAAGYASPQSPGYVPTSPAYA 406
G P SPGY PTSP ++
Sbjct: 1725 -GSPTSPGGPTSPGYSPTSPTFS 1746
[48][TOP]
>UniRef100_C1GHL1 DNA-directed RNA polymerase n=1 Tax=Paracoccidioides brasiliensis
Pb18 RepID=C1GHL1_PARBD
Length = 1746
Score = 108 bits (270), Expect = 2e-22
Identities = 78/203 (38%), Positives = 98/203 (48%), Gaps = 34/203 (16%)
Frame = +2
Query: 14 ASFSPIMSSADAAGRATPGRMT----PG----------RSPAGRFTPRM----------- 118
++FSPI AG TP T PG RSP G ++P
Sbjct: 1525 SAFSPIRQ----AGSETPAGFTEYQAPGFSGGFSPHGARSPGGGYSPSSPFNTSPTSPRY 1580
Query: 119 ------SPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAV 280
SP SPG + SPRF G PA + +AP SPAY TSPG SP++P+ +
Sbjct: 1581 SPSSGYSPTSPGMSITSPRFMSSPGFSPA--SPVFAPTSPAYSPTSPGYQQSPTSPSYSP 1638
Query: 281 SSPGY---SPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPS 451
+SPG+ SP YSPTSPS PA+ SP SP Y PTSPA G+ + SP+
Sbjct: 1639 TSPGFSPTSPSYSPTSPSF----SPASPAFSPTSPSYSPTSPALG--GSTGRHLSPTSPT 1692
Query: 452 SPAYSPFSPNYAAASSPAYQPPS 520
SP Y+P SP ++ S Y P S
Sbjct: 1693 SPKYTPTSPGWSPTSPETYSPTS 1715
Score = 72.8 bits (177), Expect = 1e-11
Identities = 53/143 (37%), Positives = 69/143 (48%), Gaps = 15/143 (10%)
Frame = +2
Query: 23 SPIMSSADAAGRAT-PGRMTPGRSPAGRFT-PRMSPASPGYAAMSPRFGGGLGGGPAGGA 196
SP+ + A T PG SP+ T P SP SP Y+ SP F PA +
Sbjct: 1610 SPVFAPTSPAYSPTSPGYQQSPTSPSYSPTSPGFSPTSPSYSPTSPSFS------PA--S 1661
Query: 197 GAYAPASPAYMATSPGMG---------YSPSTPALAVSSPGYSPG----YSPTSPSVGAR 337
A++P SP+Y TSP +G SP++P +SPG+SP YSPTSP+
Sbjct: 1662 PAFSPTSPSYSPTSPALGGSTGRHLSPTSPTSPKYTPTSPGWSPTSPETYSPTSPNFS-- 1719
Query: 338 GGPAAGYASPQSPGYVPTSPAYA 406
G P SPGY PTSP ++
Sbjct: 1720 -GSPTSPGGPTSPGYSPTSPTFS 1741
[49][TOP]
>UniRef100_C0SE75 DNA-directed RNA polymerase n=1 Tax=Paracoccidioides brasiliensis
Pb03 RepID=C0SE75_PARBP
Length = 2106
Score = 108 bits (270), Expect = 2e-22
Identities = 78/203 (38%), Positives = 98/203 (48%), Gaps = 34/203 (16%)
Frame = +2
Query: 14 ASFSPIMSSADAAGRATPGRMT----PG----------RSPAGRFTPRM----------- 118
++FSPI AG TP T PG RSP G ++P
Sbjct: 1525 SAFSPIRQ----AGSETPAGFTEYQAPGFSGGFSPHGARSPGGGYSPSSPFNTSPTSPRY 1580
Query: 119 ------SPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAV 280
SP SPG + SPRF G PA + +AP SPAY TSPG SP++P+ +
Sbjct: 1581 SPSSGYSPTSPGMSITSPRFMSSPGFSPA--SPVFAPTSPAYSPTSPGYQQSPTSPSYSP 1638
Query: 281 SSPGY---SPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPS 451
+SPG+ SP YSPTSPS PA+ SP SP Y PTSPA G+ + SP+
Sbjct: 1639 TSPGFSPTSPSYSPTSPSF----SPASPAFSPTSPSYSPTSPALG--GSTGRHLSPTSPT 1692
Query: 452 SPAYSPFSPNYAAASSPAYQPPS 520
SP Y+P SP ++ S Y P S
Sbjct: 1693 SPKYTPTSPGWSPTSPETYSPTS 1715
Score = 72.8 bits (177), Expect = 1e-11
Identities = 53/143 (37%), Positives = 69/143 (48%), Gaps = 15/143 (10%)
Frame = +2
Query: 23 SPIMSSADAAGRAT-PGRMTPGRSPAGRFT-PRMSPASPGYAAMSPRFGGGLGGGPAGGA 196
SP+ + A T PG SP+ T P SP SP Y+ SP F PA +
Sbjct: 1610 SPVFAPTSPAYSPTSPGYQQSPTSPSYSPTSPGFSPTSPSYSPTSPSFS------PA--S 1661
Query: 197 GAYAPASPAYMATSPGMG---------YSPSTPALAVSSPGYSPG----YSPTSPSVGAR 337
A++P SP+Y TSP +G SP++P +SPG+SP YSPTSP+
Sbjct: 1662 PAFSPTSPSYSPTSPALGGSTGRHLSPTSPTSPKYTPTSPGWSPTSPETYSPTSPNFS-- 1719
Query: 338 GGPAAGYASPQSPGYVPTSPAYA 406
G P SPGY PTSP ++
Sbjct: 1720 -GSPTSPGGPTSPGYSPTSPTFS 1741
[50][TOP]
>UniRef100_B6JYP8 DNA-directed RNA polymerase n=1 Tax=Schizosaccharomyces japonicus
yFS275 RepID=B6JYP8_SCHJY
Length = 1748
Score = 108 bits (270), Expect = 2e-22
Identities = 69/172 (40%), Positives = 99/172 (57%), Gaps = 6/172 (3%)
Frame = +2
Query: 23 SPIMSSADAAGRATP--GRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGA 196
SP + A + G +P G +PG SP+ +P SP+SP Y+ SP + + +
Sbjct: 1525 SPYGADARSPGYMSPFSGASSPGFSPS---SPSYSPSSPAYSPTSPSY--------SPTS 1573
Query: 197 GAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASP 367
+Y+P SP+Y TSP YSP++P+ + +SP YSP YSPTSPS P + SP
Sbjct: 1574 PSYSPTSPSYSPTSPS--YSPTSPSYSPTSPSYSPTSPSYSPTSPSY----SPTSPSYSP 1627
Query: 368 QSPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
SP Y PTSP+Y+ + + YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1628 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 1678
Score = 108 bits (269), Expect = 3e-22
Identities = 67/168 (39%), Positives = 97/168 (57%), Gaps = 4/168 (2%)
Frame = +2
Query: 29 IMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYA 208
+M+S A +PG M+P +G +P SP+SP Y+ SP + + + +Y+
Sbjct: 1522 MMASPYGADARSPGYMSPF---SGASSPGFSPSSPSYSPSSPAY--------SPTSPSYS 1570
Query: 209 PASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPG 379
P SP+Y TSP YSP++P+ + +SP YSP YSPTSPS P + SP SP
Sbjct: 1571 PTSPSYSPTSPS--YSPTSPSYSPTSPSYSPTSPSYSPTSPSY----SPTSPSYSPTSPS 1624
Query: 380 YVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
Y PTSP+Y+ + + YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1625 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 1671
Score = 103 bits (258), Expect = 6e-21
Identities = 71/173 (41%), Positives = 97/173 (56%), Gaps = 4/173 (2%)
Frame = +2
Query: 14 ASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGG 193
A+FSP++ ++ G M SP G SPGY MSP F G G +
Sbjct: 1503 AAFSPLIQTSQDTHDDDYGMMA---SPYGA-----DARSPGY--MSP-FSGASSPGFSPS 1551
Query: 194 AGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYAS 364
+ +Y+P+SPAY TSP YSP++P+ + +SP YSP YSPTSPS P + S
Sbjct: 1552 SPSYSPSSPAYSPTSPS--YSPTSPSYSPTSPSYSPTSPSYSPTSPSY----SPTSPSYS 1605
Query: 365 PQSPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
P SP Y PTSP+Y+ + + YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1606 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 1657
Score = 102 bits (254), Expect = 2e-20
Identities = 63/153 (41%), Positives = 85/153 (55%), Gaps = 3/153 (1%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP +P SP SP Y+ SP + + + +Y+P SP+Y TSP YS
Sbjct: 1608 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 1654
Query: 257 PSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVA 427
P++P+ + +SP YSP YSPTSPS P + SP SP Y PTSP+Y+ +
Sbjct: 1655 PTSPSYSPTSPSYSPTSPSYSPTSPSYS----PTSPSYSPTSPSYSPTSPSYSPGHSAQN 1710
Query: 428 AANVYSPSSPAYSPFSPNYAAASSPAYQPPSRR 526
A SP SP YSP SP+Y + +SP+Y P S R
Sbjct: 1711 AQGRMSPRSPVYSPTSPSY-SPTSPSYSPTSPR 1742
Score = 91.3 bits (225), Expect = 4e-17
Identities = 58/142 (40%), Positives = 77/142 (54%), Gaps = 5/142 (3%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP +P SP SP Y+ SP + + + +Y+P SP+Y TSP YS
Sbjct: 1629 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 1675
Query: 257 PSTPALAVSSPGYSP---GYSPTSPSV--GARGGPAAGYASPQSPGYVPTSPAYARPGTV 421
P++P+ + +SP YSP YSPTSPS G A G SP+SP Y PTSP+Y
Sbjct: 1676 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPGHSAQNAQGRMSPRSPVYSPTSPSY------ 1729
Query: 422 VAAANVYSPSSPAYSPFSPNYA 487
SP+SP+YSP SP Y+
Sbjct: 1730 -------SPTSPSYSPTSPRYS 1744
Score = 86.3 bits (212), Expect = 1e-15
Identities = 73/189 (38%), Positives = 96/189 (50%), Gaps = 25/189 (13%)
Frame = +2
Query: 29 IMSSADAAGRATPGRMTPGRS--PAGRFTP-RMSP-------ASPGYAAMSPRFGG---- 166
++S +AG T G++ P G TP SP SP AA SP
Sbjct: 1456 LLSEVPSAGMPTLVGTGMGKAILPEGSATPYERSPLADSGYMGSPDDAAFSPLIQTSQDT 1515
Query: 167 -----GLGGGPAGGAGAYAPA--SPAYMATSPGMGYSPSTPALAVSSPGY---SPGYSPT 316
G+ P G A A +P SP A+SPG +SPS+P+ + SSP Y SP YSPT
Sbjct: 1516 HDDDYGMMASPYG-ADARSPGYMSPFSGASSPG--FSPSSPSYSPSSPAYSPTSPSYSPT 1572
Query: 317 SPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAA 493
SPS P + SP SP Y PTSP+Y+ + + YSP+SP+YSP SP+Y +
Sbjct: 1573 SPSY----SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SP 1627
Query: 494 SSPAYQPPS 520
+SP+Y P S
Sbjct: 1628 TSPSYSPTS 1636
[51][TOP]
>UniRef100_UPI00019270BB PREDICTED: similar to DNA-directed RNA polymerase II subunit RPB1
isoform 1 n=1 Tax=Hydra magnipapillata
RepID=UPI00019270BB
Length = 2041
Score = 108 bits (269), Expect = 3e-22
Identities = 74/185 (40%), Positives = 97/185 (52%), Gaps = 16/185 (8%)
Frame = +2
Query: 14 ASFSPIMSSADAAGRATPGRMTPGRSPAGRFT------------PRMSPASPGYAAMSPR 157
ASFSP S DA+G + G +P SP + P + SP Y+ SP
Sbjct: 1548 ASFSPSAHS-DASGFSPAGGFSPAWSPQDSMSLGSPDSSPYIPSPSRNVMSPSYSPNSPA 1606
Query: 158 FGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPSV 328
F G Y+P SP Y TSPG YSP++P+ + +SPGY SP YSPTSPS
Sbjct: 1607 FNPQSPAMSPSSPG-YSPTSPLYSPTSPG--YSPTSPSYSPTSPGYSPTSPSYSPTSPSY 1663
Query: 329 GARGGPAAGYASPQSPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPA 505
P + SP SP Y PTSP+Y+ + + YSP+SP+YSP SP+Y + +SP+
Sbjct: 1664 ----SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPS 1718
Query: 506 YQPPS 520
Y P S
Sbjct: 1719 YSPTS 1723
Score = 107 bits (267), Expect = 5e-22
Identities = 72/185 (38%), Positives = 97/185 (52%), Gaps = 18/185 (9%)
Frame = +2
Query: 20 FSPIMSSADAAGRATPGR-----------MTPGRSPAGRF----TPRMSPASPGYAAMSP 154
FSP S D+ +P M+P SP +P MSP+SPGY+ SP
Sbjct: 1567 FSPAWSPQDSMSLGSPDSSPYIPSPSRNVMSPSYSPNSPAFNPQSPAMSPSSPGYSPTSP 1626
Query: 155 RFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPS 325
+ G + + +Y+P SP Y TSP YSP++P+ + +SP YSP YSPTSPS
Sbjct: 1627 LYSP-TSPGYSPTSPSYSPTSPGYSPTSPS--YSPTSPSYSPTSPSYSPTSPSYSPTSPS 1683
Query: 326 VGARGGPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPA 505
P + SP SP Y PTSP+Y+ + YSP+SP+YSP SP+Y + +SP
Sbjct: 1684 Y----SPTSPSYSPTSPSYSPTSPSYS------PTSPSYSPTSPSYSPTSPSY-SPTSPI 1732
Query: 506 YQPPS 520
Y P S
Sbjct: 1733 YSPTS 1737
Score = 104 bits (260), Expect = 3e-21
Identities = 65/152 (42%), Positives = 86/152 (56%), Gaps = 4/152 (2%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP+ +P+ SP SP Y+ SP + + + Y+P SP Y TSP YS
Sbjct: 1772 SPSYSPS---SPQYSPTSPAYSPQSPSYSPS-SPSYSPTSPKYSPTSPKYSPTSPK--YS 1825
Query: 257 PSTPALAVSSPGYSPG---YSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVA 427
P++P+ + SSP YSP YSPTSP+ P + SP SP Y PTSPAY+ +
Sbjct: 1826 PTSPSYSPSSPSYSPSSPNYSPTSPTYS----PTSPTYSPTSPAYSPTSPAYSPTSPAYS 1881
Query: 428 AAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
+ VYSP+SPAYSP SP Y + +SP Y P S
Sbjct: 1882 PTSPVYSPTSPAYSPTSPKY-SPTSPKYSPTS 1912
Score = 103 bits (258), Expect = 6e-21
Identities = 69/179 (38%), Positives = 88/179 (49%), Gaps = 13/179 (7%)
Frame = +2
Query: 23 SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
SPI S + T +P +P+ SP SP Y+ SP + + +
Sbjct: 1730 SPIYSPTSPSYSPTSPSYSPTSPSYSPTSPKYSPTSPSYSPTSPSY--------SPSSPQ 1781
Query: 203 YAPASPAYMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPSVGARG---GPAAGYAS 364
Y+P SPAY SP YSPS+P+ + +SP Y SP YSPTSP P++ S
Sbjct: 1782 YSPTSPAYSPQSP--SYSPSSPSYSPTSPKYSPTSPKYSPTSPKYSPTSPSYSPSSPSYS 1839
Query: 365 PQSPGYVPTSPAYARPG-TVVAAANVYSPSSPAYSPFSPNYAAAS------SPAYQPPS 520
P SP Y PTSP Y+ T + YSP+SPAYSP SP Y+ S SPAY P S
Sbjct: 1840 PSSPNYSPTSPTYSPTSPTYSPTSPAYSPTSPAYSPTSPAYSPTSPVYSPTSPAYSPTS 1898
Score = 100 bits (248), Expect = 8e-20
Identities = 63/155 (40%), Positives = 87/155 (56%), Gaps = 7/155 (4%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP +P SP SP Y+ SP + + + +Y+P SP+Y TSP YS
Sbjct: 1709 SPSYSPT---SPSYSPTSPSYSPTSPIYSP-TSPSYSPTSPSYSPTSPSYSPTSPK--YS 1762
Query: 257 PSTPALAVSSPGYSPG---YSPTSPSVGARG---GPAAGYASPQSPGYVPTSPAYARPGT 418
P++P+ + +SP YSP YSPTSP+ + P++ SP SP Y PTSP Y+
Sbjct: 1763 PTSPSYSPTSPSYSPSSPQYSPTSPAYSPQSPSYSPSSPSYSPTSPKYSPTSPKYSPTSP 1822
Query: 419 VVAAANV-YSPSSPAYSPFSPNYAAASSPAYQPPS 520
+ + YSPSSP+YSP SPNY + +SP Y P S
Sbjct: 1823 KYSPTSPSYSPSSPSYSPSSPNY-SPTSPTYSPTS 1856
Score = 93.6 bits (231), Expect = 8e-18
Identities = 63/159 (39%), Positives = 79/159 (49%), Gaps = 10/159 (6%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP +P SP SP Y+ SP + + + AY+P SP Y TSP YS
Sbjct: 1863 SPAYSPT---SPAYSPTSPAYSPTSPVY--------SPTSPAYSPTSPKYSPTSPK--YS 1909
Query: 257 PSTPALAVSSPGYSP---GYSPTSPSVGARG---GPAAGYASPQSPGYVPTSPAYARPGT 418
P++P + +SP YSP GYSPTSP P SP SP Y P SP Y+ P T
Sbjct: 1910 PTSPIYSPTSPAYSPTSTGYSPTSPEYSPSSPKYSPTTPQYSPTSPKYSPASPTYS-PST 1968
Query: 419 V----VAAANVYSPSSPAYSPFSPNYAAASSPAYQPPSR 523
V + N YSP P YSP +P Y+ +P Y P R
Sbjct: 1969 PTDKSVGSIN-YSPLEPDYSPGTPTYSPDGTPTYSPDGR 2006
Score = 69.3 bits (168), Expect = 2e-10
Identities = 56/164 (34%), Positives = 77/164 (46%), Gaps = 18/164 (10%)
Frame = +2
Query: 23 SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
SP+ S A T + +P +P+ SP SP Y+ SP + G
Sbjct: 1884 SPVYSPTSPAYSPTSPKYSPT-------SPKYSPTSPIYSPTSPAYSPTSTG-------- 1928
Query: 203 YAPASPAYMATSPGMGYSPSTPALAVSSPGYSPG---YSPTSPSVGARGGPAAGYASPQS 373
Y+P SP Y +SP YSP+TP + +SP YSP YSP++P+ + G + Y SP
Sbjct: 1929 YSPTSPEYSPSSPK--YSPTTPQYSPTSPKYSPASPTYSPSTPTDKSVG--SINY-SPLE 1983
Query: 374 PGYVPTSPAYARPGTV-----------VAAANV----YSPSSPA 460
P Y P +P Y+ GT AA N+ YSPSSP+
Sbjct: 1984 PDYSPGTPTYSPDGTPTYSPDGRGFSGTAAKNISPMDYSPSSPS 2027
Score = 56.2 bits (134), Expect = 1e-06
Identities = 50/156 (32%), Positives = 71/156 (45%), Gaps = 36/156 (23%)
Frame = +2
Query: 161 GGGLGGGPAGGAGAYAPASPAYMATSPGM-----GYSPS-----TPALAVSSPGYSPGYS 310
G G G P GG + ASP+ A SP M G++P +PAL + +S
Sbjct: 1493 GEGHGMMPGGGVFFGSAASPSN-AMSPQMTPWNQGHTPGYGDGWSPALGSGMTPGAASFS 1551
Query: 311 PTSPSVGARGGPAAGYA---SPQ----------------------SPGYVPTSPAYARPG 415
P++ S + PA G++ SPQ SP Y P SPA+
Sbjct: 1552 PSAHSDASGFSPAGGFSPAWSPQDSMSLGSPDSSPYIPSPSRNVMSPSYSPNSPAFNPQS 1611
Query: 416 TVVAAANV-YSPSSPAYSPFSPNYAAASSPAYQPPS 520
++ ++ YSP+SP YSP SP Y + +SP+Y P S
Sbjct: 1612 PAMSPSSPGYSPTSPLYSPTSPGY-SPTSPSYSPTS 1646
[52][TOP]
>UniRef100_C1MI48 DNA-directed RNA polymerase n=1 Tax=Micromonas pusilla CCMP1545
RepID=C1MI48_9CHLO
Length = 1694
Score = 108 bits (269), Expect = 3e-22
Identities = 81/177 (45%), Positives = 98/177 (55%), Gaps = 16/177 (9%)
Frame = +2
Query: 38 SADAAGRAT-PGR-MTPG----RSPAGRFTPRMSPASPGYAAM--SPRFGGGLGGGPAGG 193
SADA G T P R TPG SP+ +P+ + ASP M SP GG GGG G
Sbjct: 1467 SADALGAGTTPARGTTPGGVGSASPSFLLSPQ-AHASPFDDTMRFSPYTEGGGGGGGGDG 1525
Query: 194 AG------AYAPASPAYMATSPGMGYSPSTPALAVSSPG-YSPGYSPTSPSVGARGGPAA 352
G Y+P SPAY TSP YSP++PA + +SP SP YSPTSP+ P +
Sbjct: 1526 MGFSPTSPGYSPTSPAYSPTSPA--YSPTSPAYSPTSPAPTSPAYSPTSPAY----SPTS 1579
Query: 353 GYASPQSPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
SP SP Y PTSPAY+ + + YSP+SPAYSP SP Y + +SPAY P S
Sbjct: 1580 PAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAY-SPTSPAYSPTS 1635
Score = 107 bits (267), Expect = 5e-22
Identities = 70/168 (41%), Positives = 86/168 (51%), Gaps = 6/168 (3%)
Frame = +2
Query: 11 TASFSPIMSSADAAGRATP---GRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGG 181
T FSP G +PG SP +P SP SP Y+ SP +
Sbjct: 1507 TMRFSPYTEGGGGGGGGDGMGFSPTSPGYSPT---SPAYSPTSPAYSPTSPAYSPT---S 1560
Query: 182 PAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAA 352
PA + AY+P SPAY TSP YSP++PA + +SP YSP YSPTSP+ P +
Sbjct: 1561 PAPTSPAYSPTSPAYSPTSPA--YSPTSPAYSPTSPAYSPTSPAYSPTSPAYS----PTS 1614
Query: 353 GYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAAS 496
SP SP Y PTSPAY+ + YSP+SPAYSP SP Y+ S
Sbjct: 1615 PAYSPTSPAYSPTSPAYS------PTSPAYSPTSPAYSPTSPQYSPTS 1656
Score = 73.9 bits (180), Expect = 6e-12
Identities = 57/144 (39%), Positives = 69/144 (47%), Gaps = 16/144 (11%)
Frame = +2
Query: 23 SPIMSSADAAGRAT-PGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGG-- 193
SP S A T P +P SP +P SP SP Y+ SP + PA
Sbjct: 1546 SPAYSPTSPAYSPTSPAPTSPAYSPT---SPAYSPTSPAYSPTSPAYSPT---SPAYSPT 1599
Query: 194 AGAYAPASPAYMATSPGMG-----YSPSTPALAVSSPGYSP---GYSPTSP-----SVGA 334
+ AY+P SPAY TSP YSP++PA + +SP YSP YSPTSP SVG
Sbjct: 1600 SPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPQYSPTSVGL 1659
Query: 335 RGGPAAGYASPQSPGYVPTSPAYA 406
A SP SP Y PT A++
Sbjct: 1660 SDVENAPTRSPTSPQYSPTEGAFS 1683
[53][TOP]
>UniRef100_B7PJA3 DNA-directed RNA polymerase (Fragment) n=1 Tax=Ixodes scapularis
RepID=B7PJA3_IXOSC
Length = 1937
Score = 108 bits (269), Expect = 3e-22
Identities = 68/169 (40%), Positives = 90/169 (53%), Gaps = 3/169 (1%)
Frame = +2
Query: 23 SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
SP S + A + MTP +P SP SP Y+ SP + + + +
Sbjct: 1590 SPNYSPSSPAYAPSSPSMTPASPTYSPTSPSYSPTSPSYSPTSPNY--------SPTSPS 1641
Query: 203 YAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQS 373
Y+P SP+Y TSP YSP++P+ + +SP YSP YSPTSPS P + SP S
Sbjct: 1642 YSPTSPSYSPTSPS--YSPTSPSYSPTSPSYSPTSPSYSPTSPSYS----PTSPSYSPTS 1695
Query: 374 PGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
P Y PTSP+Y+ + YSP+SP+YSP SPNY A SP+Y P S
Sbjct: 1696 PSYSPTSPSYS------PTSPSYSPTSPSYSPSSPNYTPA-SPSYSPTS 1737
Score = 103 bits (256), Expect = 1e-20
Identities = 67/183 (36%), Positives = 93/183 (50%), Gaps = 12/183 (6%)
Frame = +2
Query: 8 ATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPA 187
A A SP M+ A T +P +P SP SP Y+ SP + +
Sbjct: 1599 AYAPSSPSMTPASPTYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSP-TSPSYS 1657
Query: 188 GGAGAYAPASPAYMATSPGMG-----YSPSTPALAVSSPGYSP---GYSPTSPSVGARG- 340
+ +Y+P SP+Y TSP YSP++P+ + +SP YSP YSPTSPS
Sbjct: 1658 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1717
Query: 341 --GPAAGYASPQSPGYVPTSPAYARPGTVVAAANV-YSPSSPAYSPFSPNYAAASSPAYQ 511
P++ +P SP Y PTSP+Y+ + + YSP+SP+YSP SPNY + SP+Y
Sbjct: 1718 SYSPSSPNYTPASPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPNY-SPQSPSYS 1776
Query: 512 PPS 520
P S
Sbjct: 1777 PGS 1779
Score = 99.8 bits (247), Expect = 1e-19
Identities = 64/153 (41%), Positives = 86/153 (56%), Gaps = 5/153 (3%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP+ +P +PASP Y+ SP + + + +Y+P SP+Y TSP YS
Sbjct: 1716 SPSYSPS---SPNYTPASPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 1762
Query: 257 PSTPALAVSSPGYSPG---YSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGT--V 421
PS+P + SP YSPG YSP+SP SP SP Y PTSP+Y+ PG+
Sbjct: 1763 PSSPNYSPQSPSYSPGSPSYSPSSPKY-----------SPTSPSYSPTSPSYS-PGSPQY 1810
Query: 422 VAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
++ YSP+SP YSP SP+Y + SSP Y P S
Sbjct: 1811 TPSSPKYSPTSPTYSPTSPSY-SPSSPKYSPTS 1842
Score = 97.8 bits (242), Expect = 4e-19
Identities = 62/152 (40%), Positives = 84/152 (55%), Gaps = 4/152 (2%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP +P SP SP Y+ SP + + + +Y+P+SP Y SP YS
Sbjct: 1688 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPSSPNYTPASPS--YS 1734
Query: 257 PSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVA 427
P++P+ + +SP YSP YSPTSPS P++ SPQSP Y P SP+Y+ +
Sbjct: 1735 PTSPSYSPTSPSYSPTSPSYSPTSPSY----SPSSPNYSPQSPSYSPGSPSYSPSSPKYS 1790
Query: 428 AAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
+ YSP+SP+YSP SP Y SSP Y P S
Sbjct: 1791 PTSPSYSPTSPSYSPGSPQY-TPSSPKYSPTS 1821
Score = 96.3 bits (238), Expect = 1e-18
Identities = 65/178 (36%), Positives = 86/178 (48%), Gaps = 12/178 (6%)
Frame = +2
Query: 23 SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFG------GGLGGGP 184
SP S + T +P +P SP SP Y+ SP++
Sbjct: 1744 SPSYSPTSPSYSPTSPSYSPSSPNYSPQSPSYSPGSPSYSPSSPKYSPTSPSYSPTSPSY 1803
Query: 185 AGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPSV---GARGGP 346
+ G+ Y P+SP Y TSP YSP++P+ + SSP Y SP YSPTSP+ + P
Sbjct: 1804 SPGSPQYTPSSPKYSPTSP--TYSPTSPSYSPSSPKYSPTSPKYSPTSPTYTPSSPKYSP 1861
Query: 347 AAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
+ SP SP Y PTSP Y+ + YSP+SP YSP SP Y + +SP Y P S
Sbjct: 1862 TSPQYSPTSPQYSPTSPKYS------PTSPKYSPTSPTYSPTSPKY-SPTSPTYSPTS 1912
Score = 90.9 bits (224), Expect = 5e-17
Identities = 60/164 (36%), Positives = 79/164 (48%), Gaps = 6/164 (3%)
Frame = +2
Query: 23 SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
SP S + T +PG +P+ SP SP Y+ SP + + +
Sbjct: 1786 SPKYSPTSPSYSPTSPSYSPGSPQYTPSSPKYSPTSPTYSPTSPSY--------SPSSPK 1837
Query: 203 YAPASPAYMATSPGMGYSPSTPALAVSSPGYSPG---YSPTSPS---VGARGGPAAGYAS 364
Y+P SP Y TSP Y+PS+P + +SP YSP YSPTSP + P + S
Sbjct: 1838 YSPTSPKYSPTSPT--YTPSSPKYSPTSPQYSPTSPQYSPTSPKYSPTSPKYSPTSPTYS 1895
Query: 365 PQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAAS 496
P SP Y PTSP Y+ + YSP+SP YSP SP Y+ S
Sbjct: 1896 PTSPKYSPTSPTYSPTSP---KGSSYSPTSPGYSPSSPTYSPTS 1936
Score = 89.0 bits (219), Expect = 2e-16
Identities = 64/179 (35%), Positives = 90/179 (50%), Gaps = 27/179 (15%)
Frame = +2
Query: 65 PGRMTP---------GRSPAGRFTPRMSPASPGYAAMSPRFGGG----LGGGPAGGAGAY 205
PG M P +P +P+M+P G +P +G G LG G GA +
Sbjct: 1491 PGMMGPLGPGVFFGSAATPLAGMSPQMTPWGQG---ATPSYGSGWSPGLGSGMTPGAAGF 1547
Query: 206 APA--------SPAYMATSPGMGYSPSTPALAVSSP----GYSPGYSPTSPSVGARGGPA 349
+P+ SPA SPG P +PA + +SP SP YSP+SP+ P+
Sbjct: 1548 SPSAASDASGYSPASAGLSPGWSPQPGSPASSPASPYIPSPVSPNYSPSSPAYA----PS 1603
Query: 350 AGYASPQSPGYVPTSPAYA--RPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
+ +P SP Y PTSP+Y+ P + N YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1604 SPSMTPASPTYSPTSPSYSPTSPSYSPTSPN-YSPTSPSYSPTSPSY-SPTSPSYSPTS 1660
Score = 70.1 bits (170), Expect = 9e-11
Identities = 47/128 (36%), Positives = 61/128 (47%), Gaps = 3/128 (2%)
Frame = +2
Query: 23 SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
SP S T +P +P+ SP SP Y SP++ + +
Sbjct: 1814 SPKYSPTSPTYSPTSPSYSPSSPKYSPTSPKYSPTSPTYTPSSPKYSP-TSPQYSPTSPQ 1872
Query: 203 YAPASPAYMATSPGMGYSPSTPALAVSSPGYSPG---YSPTSPSVGARGGPAAGYASPQS 373
Y+P SP Y TSP YSP++P + +SP YSP YSPTSP + + GY SP S
Sbjct: 1873 YSPTSPKYSPTSPK--YSPTSPTYSPTSPKYSPTSPTYSPTSPKGSSYSPTSPGY-SPSS 1929
Query: 374 PGYVPTSP 397
P Y PTSP
Sbjct: 1930 PTYSPTSP 1937
[54][TOP]
>UniRef100_UPI00005A0B29 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
(RPB1) isoform 20 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B29
Length = 1891
Score = 107 bits (268), Expect = 4e-22
Identities = 76/182 (41%), Positives = 98/182 (53%), Gaps = 13/182 (7%)
Frame = +2
Query: 14 ASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYA---------AMSPRFGG 166
A FSP +S DA+G +PG SPA TP SP SPG + AMSP +
Sbjct: 1512 AGFSPSAAS-DASG------FSPGYSPAWSPTPG-SPGSPGPSSPYIPSPGGAMSPSYSP 1563
Query: 167 GLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPSVGAR 337
G Y P SP+Y TSP YSP++P+ + +SP Y SP YSPTSPS
Sbjct: 1564 TSPAYEPRSPGGYTPQSPSYSPTSP--SYSPTSPSYSPTSPNYSPTSPSYSPTSPSY--- 1618
Query: 338 GGPAAGYASPQSPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQP 514
P + SP SP Y PTSP+Y+ + + YSP+SP+YSP SP+Y + +SP+Y P
Sbjct: 1619 -SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSP 1676
Query: 515 PS 520
S
Sbjct: 1677 TS 1678
Score = 105 bits (262), Expect = 2e-21
Identities = 68/181 (37%), Positives = 96/181 (53%), Gaps = 13/181 (7%)
Frame = +2
Query: 17 SFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGA 196
S+SP ++ A +PG TP +P SP SP Y+ SP + + +
Sbjct: 1560 SYSP---TSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNYSP-TSPSYSPTS 1615
Query: 197 GAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARG---GPAAGY 358
+Y+P SP+Y TSP YSP++P+ + +SP YSP YSPTSPS P +
Sbjct: 1616 PSYSPTSPSYSPTSPS--YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1673
Query: 359 ASPQSPGYVPTSPAYARPGTVVAAANV-YSPSSPAYSPFSPNYAAA------SSPAYQPP 517
SP SP Y PTSP+Y+ + + YSP+SP+YSP SPNY+ + +SP+Y P
Sbjct: 1674 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPSRPNYTPTSPSYSPT 1733
Query: 518 S 520
S
Sbjct: 1734 S 1734
Score = 95.5 bits (236), Expect = 2e-18
Identities = 65/170 (38%), Positives = 81/170 (47%), Gaps = 4/170 (2%)
Frame = +2
Query: 23 SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
SP S + T +P R +P SP SP Y+ SP + P +
Sbjct: 1699 SPSYSPTSPSYSPTSPNYSPSRPNYTPTSPSYSPTSPSYSPTSPNY------TPMSPNYS 1752
Query: 203 YAPASPAYMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYASPQS 373
P SP Y TSP YSPS+P +SP Y SP YSPTSP + P + SP +
Sbjct: 1753 PTPTSPKYTPTSP--SYSPSSPEYTPTSPKYSPTSPKYSPTSP----KYSPTSPTYSPTT 1806
Query: 374 PGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
P Y PTSP Y+ V + YSP+SP YSP SP Y + +SP Y P S
Sbjct: 1807 PKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTSPKY-SPTSPTYSPTS 1855
Score = 93.2 bits (230), Expect = 1e-17
Identities = 76/216 (35%), Positives = 101/216 (46%), Gaps = 52/216 (24%)
Frame = +2
Query: 29 IMSSADAAGRATPGRMTPGR--SPAGRFTPRMSP-------------------------- 124
I ++ G A P M G SP G +P M+P
Sbjct: 1455 IPTNIPGLGAAGPTGMFFGSAPSPMGGISPAMTPWNQGATPAYDPDPGAGSGMTPGAAGF 1514
Query: 125 ----------ASPGYA-AMSPRFGGGLGGGPA-------GGA--GAYAPASPAYMATSPG 244
SPGY+ A SP G GP+ GGA +Y+P SPAY SPG
Sbjct: 1515 SPSAASDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPG 1574
Query: 245 MGYSPSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPG 415
GY+P +P+ + +SP Y SP YSPTSP+ P + SP SP Y PTSP+Y+
Sbjct: 1575 -GYTPQSPSYSPTSPSYSPTSPSYSPTSPNY----SPTSPSYSPTSPSYSPTSPSYSPTS 1629
Query: 416 TVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
+ + YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1630 PSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 1664
Score = 92.4 bits (228), Expect = 2e-17
Identities = 66/170 (38%), Positives = 89/170 (52%), Gaps = 4/170 (2%)
Frame = +2
Query: 17 SFSPIMSS-ADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGG 193
S+SP S + + TP M+P SP +P+ +P SP Y+ SP + +
Sbjct: 1729 SYSPTSPSYSPTSPNYTP--MSPNYSPTPT-SPKYTPTSPSYSPSSPEYTP-TSPKYSPT 1784
Query: 194 AGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSPG---YSPTSPSVGARGGPAAGYAS 364
+ Y+P SP Y TSP YSP+TP + +SP YSP Y+PTSP + P + S
Sbjct: 1785 SPKYSPTSPKYSPTSPT--YSPTTPKYSPTSPTYSPTSPVYTPTSP----KYSPTSPTYS 1838
Query: 365 PQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQP 514
P SP Y PTSP Y+ + YSP+SP YSP SP Y + +SPA P
Sbjct: 1839 PTSPKYSPTSPTYS---PTSPKGSTYSPTSPGYSPTSPTY-SLTSPAISP 1884
[55][TOP]
>UniRef100_UPI00005A0B28 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
(RPB1) isoform 19 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B28
Length = 1908
Score = 107 bits (268), Expect = 4e-22
Identities = 76/182 (41%), Positives = 98/182 (53%), Gaps = 13/182 (7%)
Frame = +2
Query: 14 ASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYA---------AMSPRFGG 166
A FSP +S DA+G +PG SPA TP SP SPG + AMSP +
Sbjct: 1529 AGFSPSAAS-DASG------FSPGYSPAWSPTPG-SPGSPGPSSPYIPSPGGAMSPSYSP 1580
Query: 167 GLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPSVGAR 337
G Y P SP+Y TSP YSP++P+ + +SP Y SP YSPTSPS
Sbjct: 1581 TSPAYEPRSPGGYTPQSPSYSPTSP--SYSPTSPSYSPTSPNYSPTSPSYSPTSPSY--- 1635
Query: 338 GGPAAGYASPQSPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQP 514
P + SP SP Y PTSP+Y+ + + YSP+SP+YSP SP+Y + +SP+Y P
Sbjct: 1636 -SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSP 1693
Query: 515 PS 520
S
Sbjct: 1694 TS 1695
Score = 105 bits (262), Expect = 2e-21
Identities = 68/181 (37%), Positives = 96/181 (53%), Gaps = 13/181 (7%)
Frame = +2
Query: 17 SFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGA 196
S+SP ++ A +PG TP +P SP SP Y+ SP + + +
Sbjct: 1577 SYSP---TSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNYSP-TSPSYSPTS 1632
Query: 197 GAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARG---GPAAGY 358
+Y+P SP+Y TSP YSP++P+ + +SP YSP YSPTSPS P +
Sbjct: 1633 PSYSPTSPSYSPTSPS--YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1690
Query: 359 ASPQSPGYVPTSPAYARPGTVVAAANV-YSPSSPAYSPFSPNYAAA------SSPAYQPP 517
SP SP Y PTSP+Y+ + + YSP+SP+YSP SPNY+ + +SP+Y P
Sbjct: 1691 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPSRPNYTPTSPSYSPT 1750
Query: 518 S 520
S
Sbjct: 1751 S 1751
Score = 95.5 bits (236), Expect = 2e-18
Identities = 65/170 (38%), Positives = 81/170 (47%), Gaps = 4/170 (2%)
Frame = +2
Query: 23 SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
SP S + T +P R +P SP SP Y+ SP + P +
Sbjct: 1716 SPSYSPTSPSYSPTSPNYSPSRPNYTPTSPSYSPTSPSYSPTSPNY------TPMSPNYS 1769
Query: 203 YAPASPAYMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYASPQS 373
P SP Y TSP YSPS+P +SP Y SP YSPTSP + P + SP +
Sbjct: 1770 PTPTSPKYTPTSP--SYSPSSPEYTPTSPKYSPTSPKYSPTSP----KYSPTSPTYSPTT 1823
Query: 374 PGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
P Y PTSP Y+ V + YSP+SP YSP SP Y + +SP Y P S
Sbjct: 1824 PKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTSPKY-SPTSPTYSPTS 1872
Score = 93.2 bits (230), Expect = 1e-17
Identities = 76/216 (35%), Positives = 101/216 (46%), Gaps = 52/216 (24%)
Frame = +2
Query: 29 IMSSADAAGRATPGRMTPGR--SPAGRFTPRMSP-------------------------- 124
I ++ G A P M G SP G +P M+P
Sbjct: 1472 IPTNIPGLGAAGPTGMFFGSAPSPMGGISPAMTPWNQGATPAYDPDPGAGSGMTPGAAGF 1531
Query: 125 ----------ASPGYA-AMSPRFGGGLGGGPA-------GGA--GAYAPASPAYMATSPG 244
SPGY+ A SP G GP+ GGA +Y+P SPAY SPG
Sbjct: 1532 SPSAASDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPG 1591
Query: 245 MGYSPSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPG 415
GY+P +P+ + +SP Y SP YSPTSP+ P + SP SP Y PTSP+Y+
Sbjct: 1592 -GYTPQSPSYSPTSPSYSPTSPSYSPTSPNY----SPTSPSYSPTSPSYSPTSPSYSPTS 1646
Query: 416 TVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
+ + YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1647 PSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 1681
Score = 92.4 bits (228), Expect = 2e-17
Identities = 66/170 (38%), Positives = 89/170 (52%), Gaps = 4/170 (2%)
Frame = +2
Query: 17 SFSPIMSS-ADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGG 193
S+SP S + + TP M+P SP +P+ +P SP Y+ SP + +
Sbjct: 1746 SYSPTSPSYSPTSPNYTP--MSPNYSPTPT-SPKYTPTSPSYSPSSPEYTP-TSPKYSPT 1801
Query: 194 AGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSPG---YSPTSPSVGARGGPAAGYAS 364
+ Y+P SP Y TSP YSP+TP + +SP YSP Y+PTSP + P + S
Sbjct: 1802 SPKYSPTSPKYSPTSPT--YSPTTPKYSPTSPTYSPTSPVYTPTSP----KYSPTSPTYS 1855
Query: 365 PQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQP 514
P SP Y PTSP Y+ + YSP+SP YSP SP Y + +SPA P
Sbjct: 1856 PTSPKYSPTSPTYS---PTSPKGSTYSPTSPGYSPTSPTY-SLTSPAISP 1901
[56][TOP]
>UniRef100_UPI00005A0B24 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
(RPB1) isoform 15 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B24
Length = 1924
Score = 107 bits (268), Expect = 4e-22
Identities = 76/182 (41%), Positives = 98/182 (53%), Gaps = 13/182 (7%)
Frame = +2
Query: 14 ASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYA---------AMSPRFGG 166
A FSP +S DA+G +PG SPA TP SP SPG + AMSP +
Sbjct: 1545 AGFSPSAAS-DASG------FSPGYSPAWSPTPG-SPGSPGPSSPYIPSPGGAMSPSYSP 1596
Query: 167 GLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPSVGAR 337
G Y P SP+Y TSP YSP++P+ + +SP Y SP YSPTSPS
Sbjct: 1597 TSPAYEPRSPGGYTPQSPSYSPTSP--SYSPTSPSYSPTSPNYSPTSPSYSPTSPSY--- 1651
Query: 338 GGPAAGYASPQSPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQP 514
P + SP SP Y PTSP+Y+ + + YSP+SP+YSP SP+Y + +SP+Y P
Sbjct: 1652 -SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSP 1709
Query: 515 PS 520
S
Sbjct: 1710 TS 1711
Score = 105 bits (262), Expect = 2e-21
Identities = 68/181 (37%), Positives = 96/181 (53%), Gaps = 13/181 (7%)
Frame = +2
Query: 17 SFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGA 196
S+SP ++ A +PG TP +P SP SP Y+ SP + + +
Sbjct: 1593 SYSP---TSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNYSP-TSPSYSPTS 1648
Query: 197 GAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARG---GPAAGY 358
+Y+P SP+Y TSP YSP++P+ + +SP YSP YSPTSPS P +
Sbjct: 1649 PSYSPTSPSYSPTSPS--YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1706
Query: 359 ASPQSPGYVPTSPAYARPGTVVAAANV-YSPSSPAYSPFSPNYAAA------SSPAYQPP 517
SP SP Y PTSP+Y+ + + YSP+SP+YSP SPNY+ + +SP+Y P
Sbjct: 1707 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPSRPNYTPTSPSYSPT 1766
Query: 518 S 520
S
Sbjct: 1767 S 1767
Score = 95.5 bits (236), Expect = 2e-18
Identities = 65/170 (38%), Positives = 81/170 (47%), Gaps = 4/170 (2%)
Frame = +2
Query: 23 SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
SP S + T +P R +P SP SP Y+ SP + P +
Sbjct: 1732 SPSYSPTSPSYSPTSPNYSPSRPNYTPTSPSYSPTSPSYSPTSPNY------TPMSPNYS 1785
Query: 203 YAPASPAYMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYASPQS 373
P SP Y TSP YSPS+P +SP Y SP YSPTSP + P + SP +
Sbjct: 1786 PTPTSPKYTPTSP--SYSPSSPEYTPTSPKYSPTSPKYSPTSP----KYSPTSPTYSPTT 1839
Query: 374 PGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
P Y PTSP Y+ V + YSP+SP YSP SP Y + +SP Y P S
Sbjct: 1840 PKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTSPKY-SPTSPTYSPTS 1888
Score = 93.2 bits (230), Expect = 1e-17
Identities = 76/216 (35%), Positives = 101/216 (46%), Gaps = 52/216 (24%)
Frame = +2
Query: 29 IMSSADAAGRATPGRMTPGR--SPAGRFTPRMSP-------------------------- 124
I ++ G A P M G SP G +P M+P
Sbjct: 1488 IPTNIPGLGAAGPTGMFFGSAPSPMGGISPAMTPWNQGATPAYDPDPGAGSGMTPGAAGF 1547
Query: 125 ----------ASPGYA-AMSPRFGGGLGGGPA-------GGA--GAYAPASPAYMATSPG 244
SPGY+ A SP G GP+ GGA +Y+P SPAY SPG
Sbjct: 1548 SPSAASDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPG 1607
Query: 245 MGYSPSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPG 415
GY+P +P+ + +SP Y SP YSPTSP+ P + SP SP Y PTSP+Y+
Sbjct: 1608 -GYTPQSPSYSPTSPSYSPTSPSYSPTSPNY----SPTSPSYSPTSPSYSPTSPSYSPTS 1662
Query: 416 TVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
+ + YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1663 PSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 1697
Score = 92.4 bits (228), Expect = 2e-17
Identities = 66/170 (38%), Positives = 89/170 (52%), Gaps = 4/170 (2%)
Frame = +2
Query: 17 SFSPIMSS-ADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGG 193
S+SP S + + TP M+P SP +P+ +P SP Y+ SP + +
Sbjct: 1762 SYSPTSPSYSPTSPNYTP--MSPNYSPTPT-SPKYTPTSPSYSPSSPEYTP-TSPKYSPT 1817
Query: 194 AGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSPG---YSPTSPSVGARGGPAAGYAS 364
+ Y+P SP Y TSP YSP+TP + +SP YSP Y+PTSP + P + S
Sbjct: 1818 SPKYSPTSPKYSPTSPT--YSPTTPKYSPTSPTYSPTSPVYTPTSP----KYSPTSPTYS 1871
Query: 365 PQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQP 514
P SP Y PTSP Y+ + YSP+SP YSP SP Y + +SPA P
Sbjct: 1872 PTSPKYSPTSPTYS---PTSPKGSTYSPTSPGYSPTSPTY-SLTSPAISP 1917
[57][TOP]
>UniRef100_UPI00005A0B21 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
(RPB1) isoform 12 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B21
Length = 1922
Score = 107 bits (268), Expect = 4e-22
Identities = 76/182 (41%), Positives = 98/182 (53%), Gaps = 13/182 (7%)
Frame = +2
Query: 14 ASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYA---------AMSPRFGG 166
A FSP +S DA+G +PG SPA TP SP SPG + AMSP +
Sbjct: 1543 AGFSPSAAS-DASG------FSPGYSPAWSPTPG-SPGSPGPSSPYIPSPGGAMSPSYSP 1594
Query: 167 GLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPSVGAR 337
G Y P SP+Y TSP YSP++P+ + +SP Y SP YSPTSPS
Sbjct: 1595 TSPAYEPRSPGGYTPQSPSYSPTSP--SYSPTSPSYSPTSPNYSPTSPSYSPTSPSY--- 1649
Query: 338 GGPAAGYASPQSPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQP 514
P + SP SP Y PTSP+Y+ + + YSP+SP+YSP SP+Y + +SP+Y P
Sbjct: 1650 -SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSP 1707
Query: 515 PS 520
S
Sbjct: 1708 TS 1709
Score = 105 bits (262), Expect = 2e-21
Identities = 68/181 (37%), Positives = 96/181 (53%), Gaps = 13/181 (7%)
Frame = +2
Query: 17 SFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGA 196
S+SP ++ A +PG TP +P SP SP Y+ SP + + +
Sbjct: 1591 SYSP---TSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNYSP-TSPSYSPTS 1646
Query: 197 GAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARG---GPAAGY 358
+Y+P SP+Y TSP YSP++P+ + +SP YSP YSPTSPS P +
Sbjct: 1647 PSYSPTSPSYSPTSPS--YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1704
Query: 359 ASPQSPGYVPTSPAYARPGTVVAAANV-YSPSSPAYSPFSPNYAAA------SSPAYQPP 517
SP SP Y PTSP+Y+ + + YSP+SP+YSP SPNY+ + +SP+Y P
Sbjct: 1705 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPSRPNYTPTSPSYSPT 1764
Query: 518 S 520
S
Sbjct: 1765 S 1765
Score = 95.5 bits (236), Expect = 2e-18
Identities = 65/170 (38%), Positives = 81/170 (47%), Gaps = 4/170 (2%)
Frame = +2
Query: 23 SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
SP S + T +P R +P SP SP Y+ SP + P +
Sbjct: 1730 SPSYSPTSPSYSPTSPNYSPSRPNYTPTSPSYSPTSPSYSPTSPNY------TPMSPNYS 1783
Query: 203 YAPASPAYMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYASPQS 373
P SP Y TSP YSPS+P +SP Y SP YSPTSP + P + SP +
Sbjct: 1784 PTPTSPKYTPTSP--SYSPSSPEYTPTSPKYSPTSPKYSPTSP----KYSPTSPTYSPTT 1837
Query: 374 PGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
P Y PTSP Y+ V + YSP+SP YSP SP Y + +SP Y P S
Sbjct: 1838 PKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTSPKY-SPTSPTYSPTS 1886
Score = 93.2 bits (230), Expect = 1e-17
Identities = 76/216 (35%), Positives = 101/216 (46%), Gaps = 52/216 (24%)
Frame = +2
Query: 29 IMSSADAAGRATPGRMTPGR--SPAGRFTPRMSP-------------------------- 124
I ++ G A P M G SP G +P M+P
Sbjct: 1486 IPTNIPGLGAAGPTGMFFGSAPSPMGGISPAMTPWNQGATPAYDPDPGAGSGMTPGAAGF 1545
Query: 125 ----------ASPGYA-AMSPRFGGGLGGGPA-------GGA--GAYAPASPAYMATSPG 244
SPGY+ A SP G GP+ GGA +Y+P SPAY SPG
Sbjct: 1546 SPSAASDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPG 1605
Query: 245 MGYSPSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPG 415
GY+P +P+ + +SP Y SP YSPTSP+ P + SP SP Y PTSP+Y+
Sbjct: 1606 -GYTPQSPSYSPTSPSYSPTSPSYSPTSPNY----SPTSPSYSPTSPSYSPTSPSYSPTS 1660
Query: 416 TVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
+ + YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1661 PSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 1695
Score = 92.4 bits (228), Expect = 2e-17
Identities = 66/170 (38%), Positives = 89/170 (52%), Gaps = 4/170 (2%)
Frame = +2
Query: 17 SFSPIMSS-ADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGG 193
S+SP S + + TP M+P SP +P+ +P SP Y+ SP + +
Sbjct: 1760 SYSPTSPSYSPTSPNYTP--MSPNYSPTPT-SPKYTPTSPSYSPSSPEYTP-TSPKYSPT 1815
Query: 194 AGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSPG---YSPTSPSVGARGGPAAGYAS 364
+ Y+P SP Y TSP YSP+TP + +SP YSP Y+PTSP + P + S
Sbjct: 1816 SPKYSPTSPKYSPTSPT--YSPTTPKYSPTSPTYSPTSPVYTPTSP----KYSPTSPTYS 1869
Query: 365 PQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQP 514
P SP Y PTSP Y+ + YSP+SP YSP SP Y + +SPA P
Sbjct: 1870 PTSPKYSPTSPTYS---PTSPKGSTYSPTSPGYSPTSPTY-SLTSPAISP 1915
[58][TOP]
>UniRef100_UPI00005A0B20 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
(RPB1) isoform 11 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B20
Length = 1923
Score = 107 bits (268), Expect = 4e-22
Identities = 76/182 (41%), Positives = 98/182 (53%), Gaps = 13/182 (7%)
Frame = +2
Query: 14 ASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYA---------AMSPRFGG 166
A FSP +S DA+G +PG SPA TP SP SPG + AMSP +
Sbjct: 1544 AGFSPSAAS-DASG------FSPGYSPAWSPTPG-SPGSPGPSSPYIPSPGGAMSPSYSP 1595
Query: 167 GLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPSVGAR 337
G Y P SP+Y TSP YSP++P+ + +SP Y SP YSPTSPS
Sbjct: 1596 TSPAYEPRSPGGYTPQSPSYSPTSP--SYSPTSPSYSPTSPNYSPTSPSYSPTSPSY--- 1650
Query: 338 GGPAAGYASPQSPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQP 514
P + SP SP Y PTSP+Y+ + + YSP+SP+YSP SP+Y + +SP+Y P
Sbjct: 1651 -SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSP 1708
Query: 515 PS 520
S
Sbjct: 1709 TS 1710
Score = 105 bits (262), Expect = 2e-21
Identities = 68/181 (37%), Positives = 96/181 (53%), Gaps = 13/181 (7%)
Frame = +2
Query: 17 SFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGA 196
S+SP ++ A +PG TP +P SP SP Y+ SP + + +
Sbjct: 1592 SYSP---TSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNYSP-TSPSYSPTS 1647
Query: 197 GAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARG---GPAAGY 358
+Y+P SP+Y TSP YSP++P+ + +SP YSP YSPTSPS P +
Sbjct: 1648 PSYSPTSPSYSPTSPS--YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1705
Query: 359 ASPQSPGYVPTSPAYARPGTVVAAANV-YSPSSPAYSPFSPNYAAA------SSPAYQPP 517
SP SP Y PTSP+Y+ + + YSP+SP+YSP SPNY+ + +SP+Y P
Sbjct: 1706 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPSRPNYTPTSPSYSPT 1765
Query: 518 S 520
S
Sbjct: 1766 S 1766
Score = 95.5 bits (236), Expect = 2e-18
Identities = 65/170 (38%), Positives = 81/170 (47%), Gaps = 4/170 (2%)
Frame = +2
Query: 23 SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
SP S + T +P R +P SP SP Y+ SP + P +
Sbjct: 1731 SPSYSPTSPSYSPTSPNYSPSRPNYTPTSPSYSPTSPSYSPTSPNY------TPMSPNYS 1784
Query: 203 YAPASPAYMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYASPQS 373
P SP Y TSP YSPS+P +SP Y SP YSPTSP + P + SP +
Sbjct: 1785 PTPTSPKYTPTSP--SYSPSSPEYTPTSPKYSPTSPKYSPTSP----KYSPTSPTYSPTT 1838
Query: 374 PGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
P Y PTSP Y+ V + YSP+SP YSP SP Y + +SP Y P S
Sbjct: 1839 PKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTSPKY-SPTSPTYSPTS 1887
Score = 93.2 bits (230), Expect = 1e-17
Identities = 76/216 (35%), Positives = 101/216 (46%), Gaps = 52/216 (24%)
Frame = +2
Query: 29 IMSSADAAGRATPGRMTPGR--SPAGRFTPRMSP-------------------------- 124
I ++ G A P M G SP G +P M+P
Sbjct: 1487 IPTNIPGLGAAGPTGMFFGSAPSPMGGISPAMTPWNQGATPAYDPDPGAGSGMTPGAAGF 1546
Query: 125 ----------ASPGYA-AMSPRFGGGLGGGPA-------GGA--GAYAPASPAYMATSPG 244
SPGY+ A SP G GP+ GGA +Y+P SPAY SPG
Sbjct: 1547 SPSAASDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPG 1606
Query: 245 MGYSPSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPG 415
GY+P +P+ + +SP Y SP YSPTSP+ P + SP SP Y PTSP+Y+
Sbjct: 1607 -GYTPQSPSYSPTSPSYSPTSPSYSPTSPNY----SPTSPSYSPTSPSYSPTSPSYSPTS 1661
Query: 416 TVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
+ + YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1662 PSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 1696
Score = 92.4 bits (228), Expect = 2e-17
Identities = 66/170 (38%), Positives = 89/170 (52%), Gaps = 4/170 (2%)
Frame = +2
Query: 17 SFSPIMSS-ADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGG 193
S+SP S + + TP M+P SP +P+ +P SP Y+ SP + +
Sbjct: 1761 SYSPTSPSYSPTSPNYTP--MSPNYSPTPT-SPKYTPTSPSYSPSSPEYTP-TSPKYSPT 1816
Query: 194 AGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSPG---YSPTSPSVGARGGPAAGYAS 364
+ Y+P SP Y TSP YSP+TP + +SP YSP Y+PTSP + P + S
Sbjct: 1817 SPKYSPTSPKYSPTSPT--YSPTTPKYSPTSPTYSPTSPVYTPTSP----KYSPTSPTYS 1870
Query: 365 PQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQP 514
P SP Y PTSP Y+ + YSP+SP YSP SP Y + +SPA P
Sbjct: 1871 PTSPKYSPTSPTYS---PTSPKGSTYSPTSPGYSPTSPTY-SLTSPAISP 1916
[59][TOP]
>UniRef100_UPI00005A0B16 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
(RPB1) isoform 2 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B16
Length = 1922
Score = 107 bits (268), Expect = 4e-22
Identities = 76/182 (41%), Positives = 98/182 (53%), Gaps = 13/182 (7%)
Frame = +2
Query: 14 ASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYA---------AMSPRFGG 166
A FSP +S DA+G +PG SPA TP SP SPG + AMSP +
Sbjct: 1543 AGFSPSAAS-DASG------FSPGYSPAWSPTPG-SPGSPGPSSPYIPSPGGAMSPSYSP 1594
Query: 167 GLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPSVGAR 337
G Y P SP+Y TSP YSP++P+ + +SP Y SP YSPTSPS
Sbjct: 1595 TSPAYEPRSPGGYTPQSPSYSPTSP--SYSPTSPSYSPTSPNYSPTSPSYSPTSPSY--- 1649
Query: 338 GGPAAGYASPQSPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQP 514
P + SP SP Y PTSP+Y+ + + YSP+SP+YSP SP+Y + +SP+Y P
Sbjct: 1650 -SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSP 1707
Query: 515 PS 520
S
Sbjct: 1708 TS 1709
Score = 105 bits (262), Expect = 2e-21
Identities = 68/181 (37%), Positives = 96/181 (53%), Gaps = 13/181 (7%)
Frame = +2
Query: 17 SFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGA 196
S+SP ++ A +PG TP +P SP SP Y+ SP + + +
Sbjct: 1591 SYSP---TSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNYSP-TSPSYSPTS 1646
Query: 197 GAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARG---GPAAGY 358
+Y+P SP+Y TSP YSP++P+ + +SP YSP YSPTSPS P +
Sbjct: 1647 PSYSPTSPSYSPTSPS--YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1704
Query: 359 ASPQSPGYVPTSPAYARPGTVVAAANV-YSPSSPAYSPFSPNYAAA------SSPAYQPP 517
SP SP Y PTSP+Y+ + + YSP+SP+YSP SPNY+ + +SP+Y P
Sbjct: 1705 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPSRPNYTPTSPSYSPT 1764
Query: 518 S 520
S
Sbjct: 1765 S 1765
Score = 95.5 bits (236), Expect = 2e-18
Identities = 65/170 (38%), Positives = 81/170 (47%), Gaps = 4/170 (2%)
Frame = +2
Query: 23 SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
SP S + T +P R +P SP SP Y+ SP + P +
Sbjct: 1730 SPSYSPTSPSYSPTSPNYSPSRPNYTPTSPSYSPTSPSYSPTSPNY------TPMSPNYS 1783
Query: 203 YAPASPAYMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYASPQS 373
P SP Y TSP YSPS+P +SP Y SP YSPTSP + P + SP +
Sbjct: 1784 PTPTSPKYTPTSP--SYSPSSPEYTPTSPKYSPTSPKYSPTSP----KYSPTSPTYSPTT 1837
Query: 374 PGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
P Y PTSP Y+ V + YSP+SP YSP SP Y + +SP Y P S
Sbjct: 1838 PKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTSPKY-SPTSPTYSPTS 1886
Score = 93.2 bits (230), Expect = 1e-17
Identities = 76/216 (35%), Positives = 101/216 (46%), Gaps = 52/216 (24%)
Frame = +2
Query: 29 IMSSADAAGRATPGRMTPGR--SPAGRFTPRMSP-------------------------- 124
I ++ G A P M G SP G +P M+P
Sbjct: 1486 IPTNIPGLGAAGPTGMFFGSAPSPMGGISPAMTPWNQGATPAYDPDPGAGSGMTPGAAGF 1545
Query: 125 ----------ASPGYA-AMSPRFGGGLGGGPA-------GGA--GAYAPASPAYMATSPG 244
SPGY+ A SP G GP+ GGA +Y+P SPAY SPG
Sbjct: 1546 SPSAASDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPG 1605
Query: 245 MGYSPSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPG 415
GY+P +P+ + +SP Y SP YSPTSP+ P + SP SP Y PTSP+Y+
Sbjct: 1606 -GYTPQSPSYSPTSPSYSPTSPSYSPTSPNY----SPTSPSYSPTSPSYSPTSPSYSPTS 1660
Query: 416 TVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
+ + YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1661 PSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 1695
Score = 92.4 bits (228), Expect = 2e-17
Identities = 66/170 (38%), Positives = 89/170 (52%), Gaps = 4/170 (2%)
Frame = +2
Query: 17 SFSPIMSS-ADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGG 193
S+SP S + + TP M+P SP +P+ +P SP Y+ SP + +
Sbjct: 1760 SYSPTSPSYSPTSPNYTP--MSPNYSPTPT-SPKYTPTSPSYSPSSPEYTP-TSPKYSPT 1815
Query: 194 AGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSPG---YSPTSPSVGARGGPAAGYAS 364
+ Y+P SP Y TSP YSP+TP + +SP YSP Y+PTSP + P + S
Sbjct: 1816 SPKYSPTSPKYSPTSPT--YSPTTPKYSPTSPTYSPTSPVYTPTSP----KYSPTSPTYS 1869
Query: 365 PQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQP 514
P SP Y PTSP Y+ + YSP+SP YSP SP Y + +SPA P
Sbjct: 1870 PTSPKYSPTSPTYS---PTSPKGSTYSPTSPGYSPTSPTY-SLTSPAISP 1915
[60][TOP]
>UniRef100_Q30BD9 DNA-directed RNA polymerase n=1 Tax=Glaucocystis nostochinearum
RepID=Q30BD9_9EUKA
Length = 1852
Score = 107 bits (268), Expect = 4e-22
Identities = 73/175 (41%), Positives = 100/175 (57%), Gaps = 4/175 (2%)
Frame = +2
Query: 8 ATASFSPIMSSADAAG-RATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGP 184
A+ S+SP S AA R +P +PG S + +P SP SP Y+ SP +
Sbjct: 1556 ASPSYSPASPSYSAASPRYSP--TSPGYSAS---SPSYSPTSPSYSPTSPSYSP-TSPSY 1609
Query: 185 AGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAG 355
+ + AY+P SP+Y TSPG YSP++P+ + +SP Y SP YSPTSPS P +
Sbjct: 1610 SPTSPAYSPTSPSYSPTSPG--YSPTSPSYSPTSPRYSPTSPSYSPTSPSY----SPTSP 1663
Query: 356 YASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
SP SP Y PTSP+Y+ + YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1664 GYSPTSPSYSPTSPSYS------PTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 1711
Score = 105 bits (261), Expect = 3e-21
Identities = 72/189 (38%), Positives = 96/189 (50%), Gaps = 21/189 (11%)
Frame = +2
Query: 17 SFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGA 196
S+SP S A +P SP +P SP SP Y+ SPR+ + +
Sbjct: 1601 SYSPTSPSYSPTSPAY-SPTSPSYSPT---SPGYSPTSPSYSPTSPRY--------SPTS 1648
Query: 197 GAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARG--------- 340
+Y+P SP+Y TSPG YSP++P+ + +SP YSP YSPTSPS
Sbjct: 1649 PSYSPTSPSYSPTSPG--YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1706
Query: 341 -GPAAGYASPQSPGYVPTSPAYARPG--------TVVAAANVYSPSSPAYSPFSPNYAAA 493
P + SP SP Y PTSP+Y+ + A+ YSPSSP+YSP SP+Y +
Sbjct: 1707 YSPTSPSCSPTSPSYSPTSPSYSPTSPSYSPSSPSCSPASPTYSPSSPSYSPSSPSY-SP 1765
Query: 494 SSPAYQPPS 520
SSP+Y P S
Sbjct: 1766 SSPSYSPSS 1774
Score = 89.0 bits (219), Expect = 2e-16
Identities = 61/169 (36%), Positives = 86/169 (50%), Gaps = 19/169 (11%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP +P SP SP Y+ SP + + + +Y+P SP+Y TSP YS
Sbjct: 1683 SPSYSPT---SPSYSPTSPSYSPTSPSYSP-TSPSCSPTSPSYSPTSPSYSPTSPS--YS 1736
Query: 257 PSTPALAVSSPGYSPG---YSPTSPSVGARG---GPAAGYASPQSPGYVPTSPAYARPGT 418
PS+P+ + +SP YSP YSP+SPS P++ SP SP Y P S Y+ P
Sbjct: 1737 PSSPSCSPASPTYSPSSPSYSPSSPSYSPSSPSYSPSSPSYSPSSPQYTPASANYSPPSP 1796
Query: 419 VVAA-----ANVYSPSSPAYSPFSPNY--------AAASSPAYQPPSRR 526
+ ++ + YSP+SPAY SP Y A+ SPA P S++
Sbjct: 1797 LHSSPAYSPTSQYSPTSPAYGASSPAYTPQSNLSPASLPSPALSPVSQK 1845
Score = 86.3 bits (212), Expect = 1e-15
Identities = 64/187 (34%), Positives = 89/187 (47%), Gaps = 17/187 (9%)
Frame = +2
Query: 17 SFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGA 196
+FS ++ + P + G G +P+M+P M+P GG P
Sbjct: 1462 AFSTPLNRSTGGVDGQPNLVGEGSPTIG--SPQMTPYD---THMTPALQQSPGGTPFLDG 1516
Query: 197 GAYAPASPAYMAT---SPGMGYSPSTPALAVSSPGY----SPGYSPTSPSVGA---RGGP 346
++P + + SP GYSPS+P + SPG+ SP YSP SPS A R P
Sbjct: 1517 ATFSPYAESPFVDGSFSPHRGYSPSSPPYSPRSPGFDYAASPSYSPASPSYSAASPRYSP 1576
Query: 347 AAGYASPQSPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAAS------SPA 505
+ S SP Y PTSP+Y+ + + YSP+SPAYSP SP+Y+ S SP+
Sbjct: 1577 TSPGYSASSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPSYSPTSPGYSPTSPS 1636
Query: 506 YQPPSRR 526
Y P S R
Sbjct: 1637 YSPTSPR 1643
Score = 82.4 bits (202), Expect = 2e-14
Identities = 61/169 (36%), Positives = 79/169 (46%), Gaps = 3/169 (1%)
Frame = +2
Query: 23 SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
SP S + T +P +P SP SP Y+ SP + + + +
Sbjct: 1690 SPSYSPTSPSYSPTSPSYSPTSPSCSPTSPSYSPTSPSYSPTSPSY--------SPSSPS 1741
Query: 203 YAPASPAYMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYASPQS 373
+PASP Y +SP YSPS+P+ + SSP Y SP YSP+SP +P S
Sbjct: 1742 CSPASPTYSPSSPS--YSPSSPSYSPSSPSYSPSSPSYSPSSPQY-----------TPAS 1788
Query: 374 PGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
Y P SP ++ P YSP+S YSP SP Y ASSPAY P S
Sbjct: 1789 ANYSPPSPLHSSP--------AYSPTS-QYSPTSPAY-GASSPAYTPQS 1827
[61][TOP]
>UniRef100_C3ZES3 DNA-directed RNA polymerase n=1 Tax=Branchiostoma floridae
RepID=C3ZES3_BRAFL
Length = 1934
Score = 107 bits (268), Expect = 4e-22
Identities = 76/197 (38%), Positives = 102/197 (51%), Gaps = 29/197 (14%)
Frame = +2
Query: 17 SFSPIMSSADAAGRATP------GRMTPGRSPAG-RFTPR----MSPASPGYAAMSPRFG 163
++SP S + G A+P G M+P SPA + PR M+P SPGY+ SP +
Sbjct: 1564 AWSPTPGSPGSPGPASPYIPSPGGPMSPSYSPASPAYMPRSPGGMTPQSPGYSPTSPSYS 1623
Query: 164 GGLGG-GPAGG-----AGAYAPASPAYMATSPGMG-----YSPSTPALAVSSPGYSP--- 301
PA + +Y+P SP+Y TSP YSP++P+ + +SP YSP
Sbjct: 1624 PTSPSYSPASPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1683
Query: 302 GYSPTSPSVGARG---GPAAGYASPQSPGYVPTSPAYARPGTVVAAANV-YSPSSPAYSP 469
YSPTSPS P + SP SP Y PTSP+Y+ + + YSP+SP+YSP
Sbjct: 1684 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1743
Query: 470 FSPNYAAASSPAYQPPS 520
SPNY +SP Y P S
Sbjct: 1744 TSPNY-TPTSPKYSPTS 1759
Score = 102 bits (253), Expect = 2e-20
Identities = 75/191 (39%), Positives = 98/191 (51%), Gaps = 27/191 (14%)
Frame = +2
Query: 23 SPIMSSADAAGRA-TPGRMTP---GRSPAGRF----TPRMSPASPGYAAMSPRFGGGLGG 178
SP S A A +PG MTP G SP +P SPASP Y+ SP +
Sbjct: 1590 SPSYSPASPAYMPRSPGGMTPQSPGYSPTSPSYSPTSPSYSPASPNYSPTSPSYSP-TSP 1648
Query: 179 GPAGGAGAYAPASPAYMATSPGMG-----YSPSTPALAVSSPGYSP---GYSPTSPSVGA 334
+ + +Y+P SP+Y TSP YSP++P+ + +SP YSP YSPTSPS
Sbjct: 1649 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1708
Query: 335 RG---GPAAGYASPQSPGYVPTSPAYA--RPGTVVAAANV------YSPSSPAYSPFSPN 481
P + SP SP Y PTSP+Y+ P + N YSP+SP+YSP SP+
Sbjct: 1709 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYTPTSPKYSPTSPSYSPTSPS 1768
Query: 482 YAAASSPAYQP 514
Y+ A SP+Y P
Sbjct: 1769 YSPA-SPSYSP 1778
Score = 96.3 bits (238), Expect = 1e-18
Identities = 77/171 (45%), Positives = 95/171 (55%), Gaps = 2/171 (1%)
Frame = +2
Query: 14 ASFSPIMSSADAAGRATPGRMTP-GRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAG 190
A FSP +S DA+G M+P G SPA TP SP SPG A SP GGP
Sbjct: 1543 AGFSPSAAS-DASG------MSPAGYSPAWSPTPG-SPGSPGPA--SPYIPSP--GGPM- 1589
Query: 191 GAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSPGYSPTSPSVGARGGPAAGYASPQ 370
+ +Y+PASPAYM SPG G +P SPGYSPTSPS P + SP
Sbjct: 1590 -SPSYSPASPAYMPRSPG-GMTPQ-----------SPGYSPTSPSYS----PTSPSYSPA 1632
Query: 371 SPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
SP Y PTSP+Y+ + + YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1633 SPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 1682
Score = 91.3 bits (225), Expect = 4e-17
Identities = 67/164 (40%), Positives = 88/164 (53%), Gaps = 22/164 (13%)
Frame = +2
Query: 95 AGRFTPRMSP-ASPGYAAMSPRFGG----GLGGGPAGGAGAYAPA-------------SP 220
AG T MSP +P +P +GG GLG G GA ++P+ SP
Sbjct: 1504 AGSPTASMSPQMTPWQQVGTPAYGGAWSPGLGSGMTPGAAGFSPSAASDASGMSPAGYSP 1563
Query: 221 AYMATSPGMGYSPSTPALAVSSPG--YSPGYSPTSPSVGARGGPAAGYASPQSPGYVPTS 394
A+ T PG SP + + SPG SP YSP SP+ R + G +PQSPGY PTS
Sbjct: 1564 AWSPT-PGSPGSPGPASPYIPSPGGPMSPSYSPASPAYMPR---SPGGMTPQSPGYSPTS 1619
Query: 395 PAYA--RPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
P+Y+ P A+ N YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1620 PSYSPTSPSYSPASPN-YSPTSPSYSPTSPSY-SPTSPSYSPTS 1661
Score = 88.2 bits (217), Expect = 3e-16
Identities = 57/163 (34%), Positives = 83/163 (50%), Gaps = 3/163 (1%)
Frame = +2
Query: 17 SFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGA 196
S+SP S + ++ P +P + SP+SP Y+ SP++ + +
Sbjct: 1768 SYSPASPSYSPTILSNLTQLQPHLTPVHSHVTQYSPSSPKYSPSSPKYSP-TSPTYSPSS 1826
Query: 197 GAYAPASPAYMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYASP 367
Y+PASP+Y ++P Y+P++P + +SP Y SP YSPTSPS P SP
Sbjct: 1827 AKYSPASPSYSPSTPK--YTPTSPKYSPASPTYTPTSPKYSPTSPSYT----PDTPKYSP 1880
Query: 368 QSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAAS 496
SP Y PTSP Y+ + YSP++P YSP SP Y+ S
Sbjct: 1881 TSPKYSPTSPTYSPTSP---KGSTYSPTTPGYSPASPTYSPES 1920
Score = 87.4 bits (215), Expect = 5e-16
Identities = 60/165 (36%), Positives = 82/165 (49%), Gaps = 17/165 (10%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMAT------- 235
+P SP +P SP SP Y SP++ + + +Y+PASP+Y T
Sbjct: 1731 SPSYSPT---SPSYSPTSPNYTPTSPKYSP-TSPSYSPTSPSYSPASPSYSPTILSNLTQ 1786
Query: 236 ---------SPGMGYSPSTPALAVSSPGYSPGYSPTSPSVGARGGPAAGYASPQSPGYVP 388
S YSPS+P + SSP YSP SPT A+ PA+ SP +P Y P
Sbjct: 1787 LQPHLTPVHSHVTQYSPSSPKYSPSSPKYSPT-SPTYSPSSAKYSPASPSYSPSTPKYTP 1845
Query: 389 TSPAYARPG-TVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
TSP Y+ T + YSP+SP+Y+P +P Y + +SP Y P S
Sbjct: 1846 TSPKYSPASPTYTPTSPKYSPTSPSYTPDTPKY-SPTSPKYSPTS 1889
Score = 84.0 bits (206), Expect = 6e-15
Identities = 65/195 (33%), Positives = 84/195 (43%), Gaps = 29/195 (14%)
Frame = +2
Query: 23 SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGP------ 184
SP S + T TP +P SP SP Y+ SP + +
Sbjct: 1731 SPSYSPTSPSYSPTSPNYTPTSPKYSPTSPSYSPTSPSYSPASPSYSPTILSNLTQLQPH 1790
Query: 185 -----------AGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSPG---YSPTSP 322
+ + Y+P+SP Y TSP YSPS+ + +SP YSP Y+PTSP
Sbjct: 1791 LTPVHSHVTQYSPSSPKYSPSSPKYSPTSPT--YSPSSAKYSPASPSYSPSTPKYTPTSP 1848
Query: 323 SVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAAS-- 496
PA+ +P SP Y PTSP+Y P T YSP+SP YSP SP Y+ S
Sbjct: 1849 KYS----PASPTYTPTSPKYSPTSPSYT-PDTPK-----YSPTSPKYSPTSPTYSPTSPK 1898
Query: 497 -------SPAYQPPS 520
+P Y P S
Sbjct: 1899 GSTYSPTTPGYSPAS 1913
[62][TOP]
>UniRef100_UPI00005A0B1D PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
(RPB1) isoform 1 n=2 Tax=Canis lupus familiaris
RepID=UPI00005A0B1D
Length = 1764
Score = 107 bits (267), Expect = 5e-22
Identities = 66/159 (41%), Positives = 89/159 (55%), Gaps = 15/159 (9%)
Frame = +2
Query: 89 SPAGRFTPRMSP----ASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
SP G +P M+P A+P Y A SP GG + + +Y+P SPAY SPG GY+
Sbjct: 1533 SPMGGISPAMTPWNQGATPAYGAWSPSVGGAM-------SPSYSPTSPAYEPRSPG-GYT 1584
Query: 257 PSTPALAVSSPGYSP----------GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYA 406
P +P+ + +SP YSP YSPTSPS P + SP SP Y PTSP+Y+
Sbjct: 1585 PQSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSY----SPTSPSYSPTSPSYSPTSPSYS 1640
Query: 407 RPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
+ + YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1641 PTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 1678
Score = 103 bits (258), Expect = 6e-21
Identities = 69/177 (38%), Positives = 94/177 (53%), Gaps = 11/177 (6%)
Frame = +2
Query: 23 SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGG--A 196
SP M+ + G +P S G +P SP SP Y SP GG P+ +
Sbjct: 1539 SPAMTPWNQGATPAYGAWSP--SVGGAMSPSYSPTSPAYEPRSP--GGYTPQSPSYSPTS 1594
Query: 197 GAYAPASPAYMATSPGMG-----YSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAA 352
+Y+P SP+Y TSP YSP++P+ + +SP YSP YSPTSPS P +
Sbjct: 1595 PSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY----SPTS 1650
Query: 353 GYASPQSPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
SP SP Y PTSP+Y+ + + YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1651 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 1706
Score = 101 bits (251), Expect = 4e-20
Identities = 65/153 (42%), Positives = 85/153 (55%), Gaps = 5/153 (3%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP +P SP SP Y+ SP + + + +Y+P SP+Y TSP YS
Sbjct: 1629 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 1675
Query: 257 PSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYA--RPGTV 421
P++P+ + +SP YSP YSPTSPS P + SP SP Y PTSP Y+ RP
Sbjct: 1676 PTSPSYSPTSPSYSPTSPSYSPTSPSYS----PTSPSYSPTSPSYSPTSPNYSPSRPNYT 1731
Query: 422 VAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
+ + YSP+SP+YSP SPNY SP Y P S
Sbjct: 1732 PTSPS-YSPTSPSYSPTSPNY-TPMSPNYSPTS 1762
Score = 90.1 bits (222), Expect = 8e-17
Identities = 57/140 (40%), Positives = 76/140 (54%), Gaps = 5/140 (3%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP +P SP SP Y+ SP + + + +Y+P SP+Y TSP YS
Sbjct: 1643 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 1689
Query: 257 PSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYA--RPGTV 421
P++P+ + +SP YSP YSPTSPS P + SP P Y PTSP+Y+ P
Sbjct: 1690 PTSPSYSPTSPSYSPTSPSYSPTSPSYS----PTSPNYSPSRPNYTPTSPSYSPTSPSYS 1745
Query: 422 VAAANVYSPSSPAYSPFSPN 481
+ N Y+P SP YSP SPN
Sbjct: 1746 PTSPN-YTPMSPNYSPTSPN 1764
Score = 58.5 bits (140), Expect = 3e-07
Identities = 41/104 (39%), Positives = 52/104 (50%), Gaps = 7/104 (6%)
Frame = +2
Query: 230 ATSPGMGYSPS-----TPALAVSSPGYSPGYSPTSPSVGARGGPAAGYASPQSPGYVPTS 394
AT G +PS +PA+ + G +P Y SPSVG SP Y PTS
Sbjct: 1523 ATGMFFGSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGGA----------MSPSYSPTS 1572
Query: 395 PAYA--RPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
PAY PG Y+P SP+YSP SP+Y + +SP+Y P S
Sbjct: 1573 PAYEPRSPGG-------YTPQSPSYSPTSPSY-SPTSPSYSPTS 1608
[63][TOP]
>UniRef100_A7EKT1 DNA-directed RNA polymerase n=2 Tax=Sclerotinia sclerotiorum
RepID=A7EKT1_SCLS1
Length = 1746
Score = 107 bits (267), Expect = 5e-22
Identities = 81/211 (38%), Positives = 111/211 (52%), Gaps = 42/211 (19%)
Frame = +2
Query: 14 ASFSPIMS--SADAAGRATP--------GRMTP----GRSPAGRFTP-----------RM 118
A+FSPI S S +G AT G M+P RSP G ++P +
Sbjct: 1521 AAFSPIQSAGSETPSGFATEYGGSLGFGGGMSPYGAGSRSPGGGYSPTSPFNASPTSPQF 1580
Query: 119 SPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPA-LAVSSPGY 295
SP+SPGY+ SP GGG G + ++P SPA+ TSP YSP++P+ ++ +SP Y
Sbjct: 1581 SPSSPGYSPTSPMMGGGASPGYSVSP-RFSPVSPAFTPTSPA--YSPTSPSFVSPTSPSY 1637
Query: 296 SP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYA-----------RPGTVVAAA 433
SP YSPTSP++ G P + SP SP Y PTSP Y+ PG+ ++
Sbjct: 1638 SPTSPNYSPTSPNI--HGSPTSPSYSPTSPSYSPTSPNYSPTSPNYAGNKVSPGSGLSPT 1695
Query: 434 N-VYSPSSPAYSPFSPNYAA-ASSPAYQPPS 520
+ VYSP+SP +SP SP + +SP Y P S
Sbjct: 1696 SPVYSPTSPNWSPSSPQHQGNNTSPKYSPTS 1726
Score = 102 bits (253), Expect = 2e-20
Identities = 63/165 (38%), Positives = 86/165 (52%), Gaps = 7/165 (4%)
Frame = +2
Query: 23 SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
SP S + T M G SP +PR SP SP + SP + + + +
Sbjct: 1577 SPQFSPSSPGYSPTSPMMGGGASPGYSVSPRFSPVSPAFTPTSPAYSPTSPSFVSPTSPS 1636
Query: 203 YAPASPAYMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPS-VGARGGPAAGYASPQ 370
Y+P SP Y TSP + SP++P+ + +SP Y SP YSPTSP+ G + P +G SP
Sbjct: 1637 YSPTSPNYSPTSPNIHGSPTSPSYSPTSPSYSPTSPNYSPTSPNYAGNKVSPGSG-LSPT 1695
Query: 371 SPGYVPTSPAYARPGTVVAAANV---YSPSSPAYSPFSPNYAAAS 496
SP Y PTSP ++ N YSP+SP+YSP SPN++ S
Sbjct: 1696 SPVYSPTSPNWSPSSPQHQGNNTSPKYSPTSPSYSPTSPNFSPTS 1740
Score = 56.2 bits (134), Expect = 1e-06
Identities = 44/123 (35%), Positives = 56/123 (45%), Gaps = 7/123 (5%)
Frame = +2
Query: 176 GGPAGGAGAYAPASP----AYMATSP-GMGYSPSTPALAVSSPGYSPGYSPTSPSVGARG 340
GG G A Y SP Y+ T G +SP A + + G++ Y S+G G
Sbjct: 1493 GGEGGAATPYDGQSPLNEGGYLGTPDYGAAFSPIQSAGSETPSGFATEYGG---SLGFGG 1549
Query: 341 GPAAGYASPQSPG--YVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQP 514
G + A +SPG Y PTSP A P + +SPSSP YSP SP +SP Y
Sbjct: 1550 GMSPYGAGSRSPGGGYSPTSPFNASP-----TSPQFSPSSPGYSPTSPMMGGGASPGYSV 1604
Query: 515 PSR 523
R
Sbjct: 1605 SPR 1607
Score = 53.5 bits (127), Expect = 9e-06
Identities = 37/112 (33%), Positives = 53/112 (47%), Gaps = 7/112 (6%)
Frame = +2
Query: 17 SFSPIMSSADAAGRATPGRMT-PGRSPAGRFTPRMSPASPGYAAMSPRFGGGL---GGGP 184
S+SP + G T P SP +P SP SP Y+ SP + G G G
Sbjct: 1636 SYSPTSPNYSPTSPNIHGSPTSPSYSPT---SPSYSPTSPNYSPTSPNYAGNKVSPGSGL 1692
Query: 185 AGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVG 331
+ + Y+P SP + +SP + ++P + +SP YSP +SPTSP G
Sbjct: 1693 SPTSPVYSPTSPNWSPSSPQHQGNNTSPKYSPTSPSYSPTSPNFSPTSPRGG 1744
[64][TOP]
>UniRef100_A9TK89 DNA-directed RNA polymerase n=1 Tax=Physcomitrella patens subsp.
patens RepID=A9TK89_PHYPA
Length = 1646
Score = 107 bits (266), Expect = 7e-22
Identities = 68/168 (40%), Positives = 94/168 (55%), Gaps = 5/168 (2%)
Frame = +2
Query: 23 SPIMSSADAAGRATPGRMTP--GRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGA 196
S ++S + A + + +P G P +P SP+SPGY+ +SP + G
Sbjct: 1495 SYLLSPSLRASPLSEAQFSPYVGSMPFSPSSPGYSPSSPGYSPLSPGYSPTSPG------ 1548
Query: 197 GAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASP 367
Y+P SP Y TSPG YSP++P+ + +SPGYSP GYSPTSPS SP
Sbjct: 1549 --YSPTSPGYSPTSPG--YSPTSPSYSPTSPGYSPTSPGYSPTSPSY-----------SP 1593
Query: 368 QSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQ 511
SP Y PTSP+Y+ + YSP+SP+YSP SP+Y + +SPAY+
Sbjct: 1594 TSPSYAPTSPSYS------PTSPSYSPTSPSYSPTSPSY-SPTSPAYK 1634
Score = 103 bits (258), Expect = 6e-21
Identities = 68/163 (41%), Positives = 91/163 (55%), Gaps = 14/163 (8%)
Frame = +2
Query: 74 MTPGRSPA-------GRFTPR--MSPASPGYAAMSPRFGGGLGGGP-AGGAGAYAPASPA 223
MTP RSP G +P +SP+ +F +G P + + Y+P+SP
Sbjct: 1475 MTPSRSPMIGTPHNEGMMSPSYLLSPSLRASPLSEAQFSPYVGSMPFSPSSPGYSPSSPG 1534
Query: 224 YMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYASPQSPGYVPTS 394
Y SPG YSP++P + +SPGY SPGYSPTSPS P + SP SPGY PTS
Sbjct: 1535 YSPLSPG--YSPTSPGYSPTSPGYSPTSPGYSPTSPSY----SPTSPGYSPTSPGYSPTS 1588
Query: 395 PAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
P+Y+ A + YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1589 PSYSPTSPSYAPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 1630
Score = 88.2 bits (217), Expect = 3e-16
Identities = 59/140 (42%), Positives = 77/140 (55%), Gaps = 5/140 (3%)
Frame = +2
Query: 14 ASFSPIMSSADAAGRATPGRM--TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPA 187
A FSP + S + ++PG +PG SP +P SP SPGY+ SP + G +
Sbjct: 1510 AQFSPYVGSMPFSP-SSPGYSPSSPGYSP---LSPGYSPTSPGYSPTSPGYSP-TSPGYS 1564
Query: 188 GGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGY 358
+ +Y+P SP Y TSPG YSP++P+ + +SP Y SP YSPTSPS P +
Sbjct: 1565 PTSPSYSPTSPGYSPTSPG--YSPTSPSYSPTSPSYAPTSPSYSPTSPSYS----PTSPS 1618
Query: 359 ASPQSPGYVPTSPAYARPGT 418
SP SP Y PTSPAY T
Sbjct: 1619 YSPTSPSYSPTSPAYKHKPT 1638
[65][TOP]
>UniRef100_C5GKA7 DNA-directed RNA polymerase n=2 Tax=Ajellomyces dermatitidis
RepID=C5GKA7_AJEDR
Length = 1746
Score = 107 bits (266), Expect = 7e-22
Identities = 74/185 (40%), Positives = 96/185 (51%), Gaps = 16/185 (8%)
Frame = +2
Query: 14 ASFSPIMSSADAAGRATPGRMTPGR--SPAGRF-----TPRMSPAS------PGYAAMSP 154
A F+ S + G + G +PG SP F +PR SP+S PG + SP
Sbjct: 1538 AGFTEYQPSGFSGGFSPHGARSPGGGYSPTSPFNTSPTSPRYSPSSGYSPTSPGMSITSP 1597
Query: 155 RFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPS 325
RF G PA + A+AP SPAY TSPG SP++P+ + +SPG+ SP YSPTSPS
Sbjct: 1598 RFMSSPGFSPA--SPAFAPTSPAYSPTSPGYQQSPTSPSYSPTSPGFSPTSPSYSPTSPS 1655
Query: 326 VGARGGPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPA 505
PA+ SP SP Y PTSPA + + SP+SP Y+P SP ++ S
Sbjct: 1656 F----SPASPAFSPTSPSYSPTSPALGI--STGRHLSPTSPTSPKYTPTSPGWSPTSPET 1709
Query: 506 YQPPS 520
Y P S
Sbjct: 1710 YSPTS 1714
Score = 73.6 bits (179), Expect = 8e-12
Identities = 53/146 (36%), Positives = 72/146 (49%), Gaps = 14/146 (9%)
Frame = +2
Query: 8 ATASFSPIMSSADAAGRATPGRMTPGRSPAGRFT-PRMSPASPGYAAMSPRFGGGLGGGP 184
A+ +F+P ++ A +PG SP+ T P SP SP Y+ SP F P
Sbjct: 1608 ASPAFAP---TSPAYSPTSPGYQQSPTSPSYSPTSPGFSPTSPSYSPTSPSFS------P 1658
Query: 185 AGGAGAYAPASPAYMATSPGMGYS---------PSTPALAVSSPGYSPG----YSPTSPS 325
A + A++P SP+Y TSP +G S P++P +SPG+SP YSPTSP+
Sbjct: 1659 A--SPAFSPTSPSYSPTSPALGISTGRHLSPTSPTSPKYTPTSPGWSPTSPETYSPTSPN 1716
Query: 326 VGARGGPAAGYASPQSPGYVPTSPAY 403
G P SPGY PTSP +
Sbjct: 1717 FS---GSPTSPGGPTSPGYSPTSPTF 1739
[66][TOP]
>UniRef100_UPI0000546D90 PREDICTED: im:7136071 isoform 1 n=1 Tax=Danio rerio
RepID=UPI0000546D90
Length = 1972
Score = 106 bits (265), Expect = 9e-22
Identities = 73/173 (42%), Positives = 96/173 (55%), Gaps = 4/173 (2%)
Frame = +2
Query: 14 ASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGG 193
A FSP +S DA+G +PG SPA TP SP SPG A+ G +
Sbjct: 1541 AGFSPSAAS-DASG------FSPGYSPAWSPTPG-SPGSPGPASPYIPSPGYITLHFGAL 1592
Query: 194 AGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYAS 364
+ Y+P SPAY SPG GY+P +P + +SP Y SP YSPTSP+ P + S
Sbjct: 1593 SPNYSPTSPAYEPRSPGGGYTPQSPGYSPTSPSYSPTSPSYSPTSPNY----SPTSPSYS 1648
Query: 365 PQSPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
P SP Y PTSP+Y+ + + YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1649 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 1700
Score = 105 bits (263), Expect = 1e-21
Identities = 69/178 (38%), Positives = 92/178 (51%), Gaps = 12/178 (6%)
Frame = +2
Query: 23 SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
SP G TP +PG SP +P SP SP Y+ SP + + + +
Sbjct: 1600 SPAYEPRSPGGGYTP--QSPGYSPT---SPSYSPTSPSYSPTSPNYSP-TSPSYSPTSPS 1653
Query: 203 YAPASPAYMATSPGMG-----YSPSTPALAVSSPGYSP---GYSPTSPSVGARG---GPA 349
Y+P SP+Y TSP YSP++P+ + +SP YSP YSPTSPS P
Sbjct: 1654 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1713
Query: 350 AGYASPQSPGYVPTSPAYARPGTVVAAANV-YSPSSPAYSPFSPNYAAASSPAYQPPS 520
+ SP SP Y PTSP+Y+ + + YSP+SP+YSP SPNY +SP+Y P S
Sbjct: 1714 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNY-TPTSPSYSPTS 1770
Score = 102 bits (255), Expect = 1e-20
Identities = 71/166 (42%), Positives = 91/166 (54%), Gaps = 22/166 (13%)
Frame = +2
Query: 89 SPAGRFTPRMSP----ASPGYAAMSPRFGGGLGGGPAG-------GAGAYAPA-SPAYMA 232
SP +P M+P A+P Y A SP G G+ G AG A ++P SPA+
Sbjct: 1505 SPMSGMSPAMTPWNTGATPAYGAWSPSVGSGMTPGAAGFSPSAASDASGFSPGYSPAWSP 1564
Query: 233 TSPGMGYSPSTPALAVSSPGY--------SPGYSPTSPSVGARGGPAAGYASPQSPGYVP 388
T PG SP + + SPGY SP YSPTSP+ R P GY +PQSPGY P
Sbjct: 1565 T-PGSPGSPGPASPYIPSPGYITLHFGALSPNYSPTSPAYEPR-SPGGGY-TPQSPGYSP 1621
Query: 389 TSPAYA--RPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
TSP+Y+ P + N YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1622 TSPSYSPTSPSYSPTSPN-YSPTSPSYSPTSPSY-SPTSPSYSPTS 1665
Score = 102 bits (254), Expect = 2e-20
Identities = 64/157 (40%), Positives = 85/157 (54%), Gaps = 9/157 (5%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP +P SP SP Y+ SP + + + +Y+P SP+Y TSP YS
Sbjct: 1672 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 1718
Query: 257 PSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVA 427
P++P+ + +SP YSP YSPTSPS P + SP SP Y PTSP+Y+
Sbjct: 1719 PTSPSYSPTSPSYSPTSPSYSPTSPSYS----PTSPSYSPTSPNYTPTSPSYS------P 1768
Query: 428 AANVYSPSSPAYSPFSPNYAAAS------SPAYQPPS 520
+ YSP+SP+YSP SPNY S SP+Y P S
Sbjct: 1769 TSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTS 1805
Score = 99.0 bits (245), Expect = 2e-19
Identities = 64/162 (39%), Positives = 85/162 (52%), Gaps = 14/162 (8%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP +P SP SP Y+ SP + + + +Y+P SP+Y TSP YS
Sbjct: 1707 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 1753
Query: 257 PSTPALAVSSPGYSP---GYSPTSPSVGARGG---PAAGYASPQSPGYVPTSPAYA---- 406
P++P +SP YSP YSPTSPS P + SP SP Y PTSP+Y+
Sbjct: 1754 PTSPNYTPTSPSYSPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSYSPSSP 1813
Query: 407 ----RPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
+ T ++ YSPSSP+YSP SP Y +SP+Y P S
Sbjct: 1814 RYTPQSPTYTPSSPSYSPSSPSYSPTSPKY-TPTSPSYSPSS 1854
Score = 98.2 bits (243), Expect = 3e-19
Identities = 65/173 (37%), Positives = 87/173 (50%), Gaps = 7/173 (4%)
Frame = +2
Query: 23 SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
SP S + T TP +P SP SP Y+ SPR+ + +
Sbjct: 1770 SPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSYSPSSPRY-TPQSPTYTPSSPS 1828
Query: 203 YAPASPAYMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPS---VGARGGPAAGYAS 364
Y+P+SP+Y TSP Y+P++P+ + SSP Y SP YSPTSP + P + S
Sbjct: 1829 YSPSSPSYSPTSP--KYTPTSPSYSPSSPEYTPTSPKYSPTSPKYSPTSPKYSPTSPTYS 1886
Query: 365 PQSPGYVPTSPAYARPG-TVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
P +P Y PTSP Y+ T + YSP+SP YSP SP Y + +SP Y P S
Sbjct: 1887 PTTPKYSPTSPTYSPTSPTYTPTSPKYSPTSPTYSPTSPKY-SPTSPTYSPTS 1938
Score = 93.2 bits (230), Expect = 1e-17
Identities = 61/163 (37%), Positives = 78/163 (47%), Gaps = 3/163 (1%)
Frame = +2
Query: 23 SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
SP S + + T + TP +P +P SP Y+ SP+
Sbjct: 1826 SPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYSPTSPK--------------- 1870
Query: 203 YAPASPAYMATSPGMGYSPSTPALAVSSPGYSPG---YSPTSPSVGARGGPAAGYASPQS 373
Y+P SP Y TSP YSP+TP + +SP YSP Y+PTSP P + SP S
Sbjct: 1871 YSPTSPKYSPTSPT--YSPTTPKYSPTSPTYSPTSPTYTPTSPKYS----PTSPTYSPTS 1924
Query: 374 PGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSP 502
P Y PTSP Y+ + YSP+SP YSP SP Y+ A SP
Sbjct: 1925 PKYSPTSPTYSPTSP---KGSTYSPTSPGYSPTSPTYSPAISP 1964
Score = 63.5 bits (153), Expect = 8e-09
Identities = 55/158 (34%), Positives = 72/158 (45%), Gaps = 44/158 (27%)
Frame = +2
Query: 179 GPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSP----------------------G 292
GP G AP+ + M+ + + +TPA SP G
Sbjct: 1494 GPTGMFFGSAPSPMSGMSPAMTPWNTGATPAYGAWSPSVGSGMTPGAAGFSPSAASDASG 1553
Query: 293 YSPGYSPT-SPSVGARG--GPAAGY-ASP---------QSPGYVPTSPAY---ARPGTVV 424
+SPGYSP SP+ G+ G GPA+ Y SP SP Y PTSPAY + G
Sbjct: 1554 FSPGYSPAWSPTPGSPGSPGPASPYIPSPGYITLHFGALSPNYSPTSPAYEPRSPGGGYT 1613
Query: 425 AAANVYSPSSPAYSPFSPNYAAAS------SPAYQPPS 520
+ YSP+SP+YSP SP+Y+ S SP+Y P S
Sbjct: 1614 PQSPGYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTS 1651
[67][TOP]
>UniRef100_Q1E2G9 DNA-directed RNA polymerase n=1 Tax=Coccidioides immitis
RepID=Q1E2G9_COCIM
Length = 1750
Score = 106 bits (265), Expect = 9e-22
Identities = 67/153 (43%), Positives = 86/153 (56%), Gaps = 5/153 (3%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMG-- 250
+PG SP+ + SP SPG + SPR+ G PA + +AP SPAY TSPG G
Sbjct: 1578 SPGYSPSSGY----SPTSPGMSITSPRYMTSPGFSPA--SPTFAPTSPAYSPTSPGYGQA 1631
Query: 251 YSPSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTV 421
SP++P+ + +SPG+ SP YSPTSPS PA+ SP SP Y PTSPA G
Sbjct: 1632 QSPTSPSYSPTSPGFSPTSPSYSPTSPSF----SPASPAFSPTSPSYSPTSPALG--GAT 1685
Query: 422 VAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
+ SP+SP Y+P SP ++ S AY P S
Sbjct: 1686 GRHLSPTSPTSPKYTPTSPGWSPTSPEAYSPTS 1718
Score = 95.1 bits (235), Expect = 3e-18
Identities = 63/180 (35%), Positives = 85/180 (47%), Gaps = 17/180 (9%)
Frame = +2
Query: 32 MSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAP 211
+SS D + +P T +PAG FT P G+ SP GG +P
Sbjct: 1521 ISSPDPDSQFSPIGQTGSETPAG-FTEYQPP---GFGGFSPAGARSPGGYSPTSPFNTSP 1576
Query: 212 ASPAYMATSPGMGYSPSTPALAVSSPGY----------------SPGYSPTSPSVGARGG 343
SP Y SP GYSP++P ++++SP Y SP YSPTSP G
Sbjct: 1577 TSPGY---SPSSGYSPTSPGMSITSPRYMTSPGFSPASPTFAPTSPAYSPTSPGYGQAQS 1633
Query: 344 PAAGYASPQSPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
P + SP SPG+ PTSP+Y+ + A+ +SP+SP+YSP SP A+ P S
Sbjct: 1634 PTSPSYSPTSPGFSPTSPSYSPTSPSFSPASPAFSPTSPSYSPTSPALGGATGRHLSPTS 1693
Score = 72.4 bits (176), Expect = 2e-11
Identities = 51/143 (35%), Positives = 65/143 (45%), Gaps = 13/143 (9%)
Frame = +2
Query: 14 ASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGG 193
A SP S +P SP +P SP SP Y+ SP F PA
Sbjct: 1615 APTSPAYSPTSPGYGQAQSPTSPSYSPT---SPGFSPTSPSYSPTSPSFS------PA-- 1663
Query: 194 AGAYAPASPAYMATSPGMG---------YSPSTPALAVSSPGYSP----GYSPTSPSVGA 334
+ A++P SP+Y TSP +G SP++P +SPG+SP YSPTSP+
Sbjct: 1664 SPAFSPTSPSYSPTSPALGGATGRHLSPTSPTSPKYTPTSPGWSPTSPEAYSPTSPNFA- 1722
Query: 335 RGGPAAGYASPQSPGYVPTSPAY 403
G P SPGY PTSP +
Sbjct: 1723 --GSPTSPGGPTSPGYSPTSPTF 1743
Score = 71.2 bits (173), Expect = 4e-11
Identities = 57/189 (30%), Positives = 81/189 (42%), Gaps = 33/189 (17%)
Frame = +2
Query: 11 TASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGG---GLGGG 181
T+ SP S + +PG SP +P SPASP +A SP + G G
Sbjct: 1574 TSPTSPGYSPSSGYSPTSPGMSIT--SPRYMTSPGFSPASPTFAPTSPAYSPTSPGYGQA 1631
Query: 182 PAGGAGAYAPASPAYMATSPGMG-----YSPSTPALAVSSPGYSPG-------------- 304
+ + +Y+P SP + TSP +SP++PA + +SP YSP
Sbjct: 1632 QSPTSPSYSPTSPGFSPTSPSYSPTSPSFSPASPAFSPTSPSYSPTSPALGGATGRHLSP 1691
Query: 305 -------YSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYA----RPGTVVAAANVYSPS 451
Y+PTSP G++ Y PTSP +A PG + YSP+
Sbjct: 1692 TSPTSPKYTPTSP----------GWSPTSPEAYSPTSPNFAGSPTSPGGPTSPG--YSPT 1739
Query: 452 SPAYSPFSP 478
SP ++P SP
Sbjct: 1740 SPTFNPTSP 1748
[68][TOP]
>UniRef100_C5PAJ4 DNA-directed RNA polymerase n=1 Tax=Coccidioides posadasii C735 delta
SOWgp RepID=C5PAJ4_COCP7
Length = 1746
Score = 106 bits (265), Expect = 9e-22
Identities = 67/153 (43%), Positives = 86/153 (56%), Gaps = 5/153 (3%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMG-- 250
+PG SP+ + SP SPG + SPR+ G PA + +AP SPAY TSPG G
Sbjct: 1578 SPGYSPSSGY----SPTSPGMSITSPRYMTSPGFSPA--SPTFAPTSPAYSPTSPGYGQA 1631
Query: 251 YSPSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTV 421
SP++P+ + +SPG+ SP YSPTSPS PA+ SP SP Y PTSPA G
Sbjct: 1632 QSPTSPSYSPTSPGFSPTSPSYSPTSPSF----SPASPAFSPTSPSYSPTSPALG--GAT 1685
Query: 422 VAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
+ SP+SP Y+P SP ++ S AY P S
Sbjct: 1686 GRHLSPTSPTSPKYTPTSPGWSPTSPEAYSPTS 1718
Score = 95.1 bits (235), Expect = 3e-18
Identities = 63/180 (35%), Positives = 85/180 (47%), Gaps = 17/180 (9%)
Frame = +2
Query: 32 MSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAP 211
+SS D + +P T +PAG FT P G+ SP GG +P
Sbjct: 1521 ISSPDPDSQFSPIGQTGSETPAG-FTEYQPP---GFGGFSPAGARSPGGYSPTSPFNTSP 1576
Query: 212 ASPAYMATSPGMGYSPSTPALAVSSPGY----------------SPGYSPTSPSVGARGG 343
SP Y SP GYSP++P ++++SP Y SP YSPTSP G
Sbjct: 1577 TSPGY---SPSSGYSPTSPGMSITSPRYMTSPGFSPASPTFAPTSPAYSPTSPGYGQAQS 1633
Query: 344 PAAGYASPQSPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
P + SP SPG+ PTSP+Y+ + A+ +SP+SP+YSP SP A+ P S
Sbjct: 1634 PTSPSYSPTSPGFSPTSPSYSPTSPSFSPASPAFSPTSPSYSPTSPALGGATGRHLSPTS 1693
Score = 72.4 bits (176), Expect = 2e-11
Identities = 51/143 (35%), Positives = 65/143 (45%), Gaps = 13/143 (9%)
Frame = +2
Query: 14 ASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGG 193
A SP S +P SP +P SP SP Y+ SP F PA
Sbjct: 1615 APTSPAYSPTSPGYGQAQSPTSPSYSPT---SPGFSPTSPSYSPTSPSFS------PA-- 1663
Query: 194 AGAYAPASPAYMATSPGMG---------YSPSTPALAVSSPGYSP----GYSPTSPSVGA 334
+ A++P SP+Y TSP +G SP++P +SPG+SP YSPTSP+
Sbjct: 1664 SPAFSPTSPSYSPTSPALGGATGRHLSPTSPTSPKYTPTSPGWSPTSPEAYSPTSPNFA- 1722
Query: 335 RGGPAAGYASPQSPGYVPTSPAY 403
G P SPGY PTSP +
Sbjct: 1723 --GSPTSPGGPTSPGYSPTSPTF 1743
Score = 70.9 bits (172), Expect = 5e-11
Identities = 56/187 (29%), Positives = 79/187 (42%), Gaps = 29/187 (15%)
Frame = +2
Query: 11 TASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGG---GLGGG 181
T+ SP S + +PG SP +P SPASP +A SP + G G
Sbjct: 1574 TSPTSPGYSPSSGYSPTSPGMSIT--SPRYMTSPGFSPASPTFAPTSPAYSPTSPGYGQA 1631
Query: 182 PAGGAGAYAPASPAYMATSPGMG-----YSPSTPALAVSSPGYSPG-------------- 304
+ + +Y+P SP + TSP +SP++PA + +SP YSP
Sbjct: 1632 QSPTSPSYSPTSPGFSPTSPSYSPTSPSFSPASPAFSPTSPSYSPTSPALGGATGRHLSP 1691
Query: 305 -------YSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAY 463
Y+PTSP G++ Y PTSP +A T + P+SP Y
Sbjct: 1692 TSPTSPKYTPTSP----------GWSPTSPEAYSPTSPNFAGSPT-----SPGGPTSPGY 1736
Query: 464 SPFSPNY 484
SP SP +
Sbjct: 1737 SPTSPTF 1743
[69][TOP]
>UniRef100_UPI0001796DD3 PREDICTED: similar to DNA-directed RNA polymerase II subunit RPB1
(RNA polymerase II subunit B1) (DNA-directed RNA
polymerase II subunit A) (DNA-directed RNA polymerase III
largest subunit) n=1 Tax=Equus caballus
RepID=UPI0001796DD3
Length = 1834
Score = 106 bits (264), Expect = 1e-21
Identities = 69/181 (38%), Positives = 95/181 (52%), Gaps = 13/181 (7%)
Frame = +2
Query: 17 SFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGA 196
S+SP ++ A +PG TP +P SP SP Y+ SP + + +
Sbjct: 1592 SYSP---TSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNYSP-TSPSYSPTS 1647
Query: 197 GAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARG---GPAAGY 358
+Y+P SP+Y TSP YSP++P+ + +SP YSP YSPTSPS P +
Sbjct: 1648 PSYSPTSPSYSPTSPS--YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1705
Query: 359 ASPQSPGYVPTSPAYARPGTVVAAANV-YSPSSPAYSPFSPNYAAAS------SPAYQPP 517
SP SP Y PTSP+Y+ + + YSP+SP+YSP SPNY+ S SP+Y P
Sbjct: 1706 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPNYTPTSPSYSPT 1765
Query: 518 S 520
S
Sbjct: 1766 S 1766
Score = 100 bits (249), Expect = 6e-20
Identities = 63/152 (41%), Positives = 83/152 (54%), Gaps = 4/152 (2%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP +P SP SP Y+ SP + + + +Y+P SP+Y TSP YS
Sbjct: 1654 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 1700
Query: 257 PSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPG-TVV 424
P++P+ + +SP YSP YSPTSPS P + SP SP Y PTSP Y+
Sbjct: 1701 PTSPSYSPTSPSYSPTSPSYSPTSPSYS----PTSPSYSPTSPSYSPTSPNYSPTSPNYT 1756
Query: 425 AAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
+ YSP+SP+YSP SPNY +SP Y P S
Sbjct: 1757 PTSPSYSPTSPSYSPTSPNY-TPTSPNYSPTS 1787
Score = 99.4 bits (246), Expect = 1e-19
Identities = 74/182 (40%), Positives = 97/182 (53%), Gaps = 18/182 (9%)
Frame = +2
Query: 29 IMSSADAAGRATPGRMTPGR--SPAGRFTPRMSP----ASPGYAAMSPRFGGGLGGGPAG 190
I ++ G A P M G SP G +P M+P A+P Y A SP G G+ G AG
Sbjct: 1486 IPTNIPGLGAAGPTGMFFGSAPSPMGGISPAMTPWNVGATPAYGAWSPSVGSGMTPGAAG 1545
Query: 191 -------GAGAYAPA-SPAYMATSPGMGYSPSTPALAVSSPG--YSPGYSPTSPSVGARG 340
A ++P SPA+ T PG SP + + SPG SP YSPTSP+ R
Sbjct: 1546 FSPSAASDASGFSPGYSPAWSPT-PGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPR- 1603
Query: 341 GPAAGYASPQSPGYVPTSPAYA--RPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQP 514
+ G +PQSP Y PTSP+Y+ P + N YSP+SP+YSP SP+Y + +SP+Y P
Sbjct: 1604 --SPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPN-YSPTSPSYSPTSPSY-SPTSPSYSP 1659
Query: 515 PS 520
S
Sbjct: 1660 TS 1661
Score = 95.1 bits (235), Expect = 3e-18
Identities = 61/156 (39%), Positives = 82/156 (52%), Gaps = 10/156 (6%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP +P SP SP Y+ SP + + + +Y+P SP+Y TSP YS
Sbjct: 1689 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 1735
Query: 257 PSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVA 427
P++P+ + +SP YSP Y+PTSPS P + SP SP Y PTSP Y+ +
Sbjct: 1736 PTSPSYSPTSPNYSPTSPNYTPTSPSYS----PTSPSYSPTSPNYTPTSPNYSPTSPSYS 1791
Query: 428 AANV-YSPSSPAYSPFSPNYAAAS------SPAYQP 514
YSP+SP+YSP SP Y+ S SPA P
Sbjct: 1792 PTTPSYSPTSPSYSPTSPGYSPTSPTYSLTSPAISP 1827
[70][TOP]
>UniRef100_UPI0000F2BF13 PREDICTED: similar to RNA polymerase II isoform 2 n=1 Tax=Monodelphis
domestica RepID=UPI0000F2BF13
Length = 1932
Score = 106 bits (264), Expect = 1e-21
Identities = 69/181 (38%), Positives = 95/181 (52%), Gaps = 13/181 (7%)
Frame = +2
Query: 17 SFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGA 196
S+SP ++ A +PG TP +P SP SP Y+ SP + + +
Sbjct: 1554 SYSP---TSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNYSP-TSPSYSPTS 1609
Query: 197 GAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARG---GPAAGY 358
+Y+P SP+Y TSP YSP++P+ + +SP YSP YSPTSPS P +
Sbjct: 1610 PSYSPTSPSYSPTSPS--YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1667
Query: 359 ASPQSPGYVPTSPAYARPGTVVAAANV-YSPSSPAYSPFSPNYAAAS------SPAYQPP 517
SP SP Y PTSP+Y+ + + YSP+SP+YSP SPNY+ S SP+Y P
Sbjct: 1668 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPNYTPTSPSYSPT 1727
Query: 518 S 520
S
Sbjct: 1728 S 1728
Score = 100 bits (250), Expect = 5e-20
Identities = 64/158 (40%), Positives = 84/158 (53%), Gaps = 10/158 (6%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP +P SP SP Y+ SP + + + +Y+P SP+Y TSP YS
Sbjct: 1616 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 1662
Query: 257 PSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPG-TVV 424
P++P+ + +SP YSP YSPTSPS P + SP SP Y PTSP Y+
Sbjct: 1663 PTSPSYSPTSPSYSPTSPSYSPTSPSYS----PTSPSYSPTSPSYSPTSPNYSPTSPNYT 1718
Query: 425 AAANVYSPSSPAYSPFSPNYAAAS------SPAYQPPS 520
+ YSP+SP+YSP SPNY S SP+Y P S
Sbjct: 1719 PTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTS 1756
Score = 99.4 bits (246), Expect = 1e-19
Identities = 63/152 (41%), Positives = 83/152 (54%), Gaps = 4/152 (2%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP +P SP SP Y+ SP + + + Y+P SP Y TSP YS
Sbjct: 1679 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPNYSPTSPNYTPTSPS--YS 1725
Query: 257 PSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYA-RPGTVV 424
P++P+ + +SP Y SP YSPTSPS P + SP SP Y P+SP Y + T
Sbjct: 1726 PTSPSYSPTSPNYTPTSPNYSPTSPSYS----PTSPSYSPTSPSYSPSSPRYTPQSPTYT 1781
Query: 425 AAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
++ YSPSSP+YSP SP Y +SP+Y P S
Sbjct: 1782 PSSPSYSPSSPSYSPTSPKY-TPTSPSYSPSS 1812
Score = 96.7 bits (239), Expect = 9e-19
Identities = 71/171 (41%), Positives = 95/171 (55%), Gaps = 2/171 (1%)
Frame = +2
Query: 14 ASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAA-MSPRFGGGLGGGPAG 190
A FSP +S DA+G +PG SPA TP SP SPG ++ P GG +
Sbjct: 1506 AGFSPSAAS-DASG------FSPGYSPAWSPTPG-SPGSPGPSSPYIPSPGGAM------ 1551
Query: 191 GAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSPGYSPTSPSVGARGGPAAGYASPQ 370
+ +Y+P SPAY SPG GY+P +P+ + +SP YSP TSPS SP
Sbjct: 1552 -SPSYSPTSPAYEPRSPG-GYTPQSPSYSPTSPSYSP----TSPSY-----------SPT 1594
Query: 371 SPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
SP Y PTSP+Y+ + + YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1595 SPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 1644
Score = 96.7 bits (239), Expect = 9e-19
Identities = 62/152 (40%), Positives = 81/152 (53%), Gaps = 4/152 (2%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP+ +PR +P SP Y SP + + + +Y+P SP Y TSP YS
Sbjct: 1763 SPSYSPS---SPRYTPQSPTYTPSSPSY--------SPSSPSYSPTSPKYTPTSP--SYS 1809
Query: 257 PSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVA 427
PS+P +SP Y SP YSPTSP + P + SP +P Y PTSP Y+ V
Sbjct: 1810 PSSPEYTPTSPKYSPTSPKYSPTSP----KYSPTSPTYSPTTPKYSPTSPTYSPTSPVYT 1865
Query: 428 AAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
+ YSP+SP YSP SP Y + +SP Y P S
Sbjct: 1866 PTSPKYSPTSPTYSPTSPKY-SPTSPTYSPTS 1896
Score = 94.0 bits (232), Expect = 6e-18
Identities = 67/181 (37%), Positives = 94/181 (51%), Gaps = 13/181 (7%)
Frame = +2
Query: 17 SFSPIMSS-ADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGG 193
S+SP S + ++ R TP +P +P+ +P SP+SP Y+ SP++
Sbjct: 1758 SYSPTSPSYSPSSPRYTP--QSPTYTPS---SPSYSPSSPSYSPTSPKY--------TPT 1804
Query: 194 AGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYAS 364
+ +Y+P+SP Y TSP YSP++P + +SP Y SP YSPT+P + P + S
Sbjct: 1805 SPSYSPSSPEYTPTSP--KYSPTSPKYSPTSPKYSPTSPTYSPTTP----KYSPTSPTYS 1858
Query: 365 PQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAAS---------SPAYQPP 517
P SP Y PTSP Y+ + YSP+SP YSP SP Y+ S SP Y P
Sbjct: 1859 PTSPVYTPTSPKYS------PTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPT 1912
Query: 518 S 520
S
Sbjct: 1913 S 1913
Score = 92.0 bits (227), Expect = 2e-17
Identities = 62/167 (37%), Positives = 81/167 (48%), Gaps = 3/167 (1%)
Frame = +2
Query: 23 SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
SP S + + T + TP +P +P SP Y+ SP+
Sbjct: 1784 SPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYSPTSPK--------------- 1828
Query: 203 YAPASPAYMATSPGMGYSPSTPALAVSSPGYSPG---YSPTSPSVGARGGPAAGYASPQS 373
Y+P SP Y TSP YSP+TP + +SP YSP Y+PTSP + P + SP S
Sbjct: 1829 YSPTSPKYSPTSPT--YSPTTPKYSPTSPTYSPTSPVYTPTSP----KYSPTSPTYSPTS 1882
Query: 374 PGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQP 514
P Y PTSP Y+ + YSP+SP YSP SP Y + +SPA P
Sbjct: 1883 PKYSPTSPTYS---PTSPKGSTYSPTSPGYSPTSPTY-SLTSPAISP 1925
Score = 73.6 bits (179), Expect = 8e-12
Identities = 49/111 (44%), Positives = 63/111 (56%), Gaps = 16/111 (14%)
Frame = +2
Query: 236 SPGM-GYSPSTPALAVSSPGYSPGYSPT-SPSVGARG--GPAAGY----ASPQSPGYVPT 391
+PG G+SPS A + G+SPGYSP SP+ G+ G GP++ Y SP Y PT
Sbjct: 1502 TPGAAGFSPSA---ASDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPT 1558
Query: 392 SPAY--ARPGTVVAAANVYSPSSPAYSPFSPNYAAAS------SPAYQPPS 520
SPAY PG + YSP+SP+YSP SP+Y+ S SP+Y P S
Sbjct: 1559 SPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTS 1609
Score = 70.1 bits (170), Expect = 9e-11
Identities = 55/140 (39%), Positives = 72/140 (51%), Gaps = 17/140 (12%)
Frame = +2
Query: 152 PRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPS---TPALAVSSPGYSP------- 301
P G G GA ++P S A A+ GYSP+ TP + SPG S
Sbjct: 1491 PGLGAAGRSGMTPGAAGFSP-SAASDASGFSPGYSPAWSPTPG-SPGSPGPSSPYIPSPG 1548
Query: 302 -----GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYA--RPGTVVAAANVYSPSSPA 460
YSPTSP+ R + G +PQSP Y PTSP+Y+ P + N YSP+SP+
Sbjct: 1549 GAMSPSYSPTSPAYEPR---SPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPN-YSPTSPS 1604
Query: 461 YSPFSPNYAAASSPAYQPPS 520
YSP SP+Y + +SP+Y P S
Sbjct: 1605 YSPTSPSY-SPTSPSYSPTS 1623
[71][TOP]
>UniRef100_UPI0000F2BF12 PREDICTED: similar to RNA polymerase II isoform 1 n=1 Tax=Monodelphis
domestica RepID=UPI0000F2BF12
Length = 1970
Score = 106 bits (264), Expect = 1e-21
Identities = 69/181 (38%), Positives = 95/181 (52%), Gaps = 13/181 (7%)
Frame = +2
Query: 17 SFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGA 196
S+SP ++ A +PG TP +P SP SP Y+ SP + + +
Sbjct: 1592 SYSP---TSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNYSP-TSPSYSPTS 1647
Query: 197 GAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARG---GPAAGY 358
+Y+P SP+Y TSP YSP++P+ + +SP YSP YSPTSPS P +
Sbjct: 1648 PSYSPTSPSYSPTSPS--YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1705
Query: 359 ASPQSPGYVPTSPAYARPGTVVAAANV-YSPSSPAYSPFSPNYAAAS------SPAYQPP 517
SP SP Y PTSP+Y+ + + YSP+SP+YSP SPNY+ S SP+Y P
Sbjct: 1706 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPNYTPTSPSYSPT 1765
Query: 518 S 520
S
Sbjct: 1766 S 1766
Score = 100 bits (250), Expect = 5e-20
Identities = 64/158 (40%), Positives = 84/158 (53%), Gaps = 10/158 (6%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP +P SP SP Y+ SP + + + +Y+P SP+Y TSP YS
Sbjct: 1654 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 1700
Query: 257 PSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPG-TVV 424
P++P+ + +SP YSP YSPTSPS P + SP SP Y PTSP Y+
Sbjct: 1701 PTSPSYSPTSPSYSPTSPSYSPTSPSYS----PTSPSYSPTSPSYSPTSPNYSPTSPNYT 1756
Query: 425 AAANVYSPSSPAYSPFSPNYAAAS------SPAYQPPS 520
+ YSP+SP+YSP SPNY S SP+Y P S
Sbjct: 1757 PTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTS 1794
Score = 99.4 bits (246), Expect = 1e-19
Identities = 74/182 (40%), Positives = 97/182 (53%), Gaps = 18/182 (9%)
Frame = +2
Query: 29 IMSSADAAGRATPGRMTPGR--SPAGRFTPRMSP----ASPGYAAMSPRFGGGLGGGPAG 190
I ++ G A P M G SP G +P M+P A+P Y A SP G G+ G AG
Sbjct: 1486 IPTNIPGLGAAGPTGMFFGSAPSPMGGMSPAMTPWNQGATPAYGAWSPSVGSGMTPGAAG 1545
Query: 191 -------GAGAYAPA-SPAYMATSPGMGYSPSTPALAVSSPG--YSPGYSPTSPSVGARG 340
A ++P SPA+ T PG SP + + SPG SP YSPTSP+ R
Sbjct: 1546 FSPSAASDASGFSPGYSPAWSPT-PGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPR- 1603
Query: 341 GPAAGYASPQSPGYVPTSPAYA--RPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQP 514
+ G +PQSP Y PTSP+Y+ P + N YSP+SP+YSP SP+Y + +SP+Y P
Sbjct: 1604 --SPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPN-YSPTSPSYSPTSPSY-SPTSPSYSP 1659
Query: 515 PS 520
S
Sbjct: 1660 TS 1661
Score = 99.4 bits (246), Expect = 1e-19
Identities = 63/152 (41%), Positives = 83/152 (54%), Gaps = 4/152 (2%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP +P SP SP Y+ SP + + + Y+P SP Y TSP YS
Sbjct: 1717 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPNYSPTSPNYTPTSPS--YS 1763
Query: 257 PSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYA-RPGTVV 424
P++P+ + +SP Y SP YSPTSPS P + SP SP Y P+SP Y + T
Sbjct: 1764 PTSPSYSPTSPNYTPTSPNYSPTSPSYS----PTSPSYSPTSPSYSPSSPRYTPQSPTYT 1819
Query: 425 AAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
++ YSPSSP+YSP SP Y +SP+Y P S
Sbjct: 1820 PSSPSYSPSSPSYSPTSPKY-TPTSPSYSPSS 1850
Score = 96.7 bits (239), Expect = 9e-19
Identities = 62/152 (40%), Positives = 81/152 (53%), Gaps = 4/152 (2%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP+ +PR +P SP Y SP + + + +Y+P SP Y TSP YS
Sbjct: 1801 SPSYSPS---SPRYTPQSPTYTPSSPSY--------SPSSPSYSPTSPKYTPTSP--SYS 1847
Query: 257 PSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVA 427
PS+P +SP Y SP YSPTSP + P + SP +P Y PTSP Y+ V
Sbjct: 1848 PSSPEYTPTSPKYSPTSPKYSPTSP----KYSPTSPTYSPTTPKYSPTSPTYSPTSPVYT 1903
Query: 428 AAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
+ YSP+SP YSP SP Y + +SP Y P S
Sbjct: 1904 PTSPKYSPTSPTYSPTSPKY-SPTSPTYSPTS 1934
Score = 94.0 bits (232), Expect = 6e-18
Identities = 67/181 (37%), Positives = 94/181 (51%), Gaps = 13/181 (7%)
Frame = +2
Query: 17 SFSPIMSS-ADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGG 193
S+SP S + ++ R TP +P +P+ +P SP+SP Y+ SP++
Sbjct: 1796 SYSPTSPSYSPSSPRYTP--QSPTYTPS---SPSYSPSSPSYSPTSPKY--------TPT 1842
Query: 194 AGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYAS 364
+ +Y+P+SP Y TSP YSP++P + +SP Y SP YSPT+P + P + S
Sbjct: 1843 SPSYSPSSPEYTPTSP--KYSPTSPKYSPTSPKYSPTSPTYSPTTP----KYSPTSPTYS 1896
Query: 365 PQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAAS---------SPAYQPP 517
P SP Y PTSP Y+ + YSP+SP YSP SP Y+ S SP Y P
Sbjct: 1897 PTSPVYTPTSPKYS------PTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPT 1950
Query: 518 S 520
S
Sbjct: 1951 S 1951
Score = 92.0 bits (227), Expect = 2e-17
Identities = 62/167 (37%), Positives = 81/167 (48%), Gaps = 3/167 (1%)
Frame = +2
Query: 23 SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
SP S + + T + TP +P +P SP Y+ SP+
Sbjct: 1822 SPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYSPTSPK--------------- 1866
Query: 203 YAPASPAYMATSPGMGYSPSTPALAVSSPGYSPG---YSPTSPSVGARGGPAAGYASPQS 373
Y+P SP Y TSP YSP+TP + +SP YSP Y+PTSP + P + SP S
Sbjct: 1867 YSPTSPKYSPTSPT--YSPTTPKYSPTSPTYSPTSPVYTPTSP----KYSPTSPTYSPTS 1920
Query: 374 PGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQP 514
P Y PTSP Y+ + YSP+SP YSP SP Y + +SPA P
Sbjct: 1921 PKYSPTSPTYS---PTSPKGSTYSPTSPGYSPTSPTY-SLTSPAISP 1963
[72][TOP]
>UniRef100_UPI0000EBDCD2 PREDICTED: polymerase (RNA) II (DNA directed) polypeptide A, 220kDa
isoform 4 n=1 Tax=Bos taurus RepID=UPI0000EBDCD2
Length = 1970
Score = 106 bits (264), Expect = 1e-21
Identities = 69/181 (38%), Positives = 95/181 (52%), Gaps = 13/181 (7%)
Frame = +2
Query: 17 SFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGA 196
S+SP ++ A +PG TP +P SP SP Y+ SP + + +
Sbjct: 1592 SYSP---TSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNYSP-TSPSYSPTS 1647
Query: 197 GAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARG---GPAAGY 358
+Y+P SP+Y TSP YSP++P+ + +SP YSP YSPTSPS P +
Sbjct: 1648 PSYSPTSPSYSPTSPS--YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1705
Query: 359 ASPQSPGYVPTSPAYARPGTVVAAANV-YSPSSPAYSPFSPNYAAAS------SPAYQPP 517
SP SP Y PTSP+Y+ + + YSP+SP+YSP SPNY+ S SP+Y P
Sbjct: 1706 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPNYTPTSPSYSPT 1765
Query: 518 S 520
S
Sbjct: 1766 S 1766
Score = 100 bits (250), Expect = 5e-20
Identities = 64/158 (40%), Positives = 84/158 (53%), Gaps = 10/158 (6%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP +P SP SP Y+ SP + + + +Y+P SP+Y TSP YS
Sbjct: 1654 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 1700
Query: 257 PSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPG-TVV 424
P++P+ + +SP YSP YSPTSPS P + SP SP Y PTSP Y+
Sbjct: 1701 PTSPSYSPTSPSYSPTSPSYSPTSPSYS----PTSPSYSPTSPSYSPTSPNYSPTSPNYT 1756
Query: 425 AAANVYSPSSPAYSPFSPNYAAAS------SPAYQPPS 520
+ YSP+SP+YSP SPNY S SP+Y P S
Sbjct: 1757 PTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTS 1794
Score = 99.4 bits (246), Expect = 1e-19
Identities = 74/182 (40%), Positives = 97/182 (53%), Gaps = 18/182 (9%)
Frame = +2
Query: 29 IMSSADAAGRATPGRMTPGR--SPAGRFTPRMSP----ASPGYAAMSPRFGGGLGGGPAG 190
I ++ G A P M G SP G +P M+P A+P Y A SP G G+ G AG
Sbjct: 1486 IPTNIPGLGAAGPTGMFFGSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGSGMTPGAAG 1545
Query: 191 -------GAGAYAPA-SPAYMATSPGMGYSPSTPALAVSSPG--YSPGYSPTSPSVGARG 340
A ++P SPA+ T PG SP + + SPG SP YSPTSP+ R
Sbjct: 1546 FSPSAASDASGFSPGYSPAWSPT-PGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPR- 1603
Query: 341 GPAAGYASPQSPGYVPTSPAYA--RPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQP 514
+ G +PQSP Y PTSP+Y+ P + N YSP+SP+YSP SP+Y + +SP+Y P
Sbjct: 1604 --SPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPN-YSPTSPSYSPTSPSY-SPTSPSYSP 1659
Query: 515 PS 520
S
Sbjct: 1660 TS 1661
Score = 99.4 bits (246), Expect = 1e-19
Identities = 63/152 (41%), Positives = 83/152 (54%), Gaps = 4/152 (2%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP +P SP SP Y+ SP + + + Y+P SP Y TSP YS
Sbjct: 1717 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPNYSPTSPNYTPTSPS--YS 1763
Query: 257 PSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYA-RPGTVV 424
P++P+ + +SP Y SP YSPTSPS P + SP SP Y P+SP Y + T
Sbjct: 1764 PTSPSYSPTSPNYTPTSPNYSPTSPSYS----PTSPSYSPTSPSYSPSSPRYTPQSPTYT 1819
Query: 425 AAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
++ YSPSSP+YSP SP Y +SP+Y P S
Sbjct: 1820 PSSPSYSPSSPSYSPTSPKY-TPTSPSYSPSS 1850
Score = 96.7 bits (239), Expect = 9e-19
Identities = 62/152 (40%), Positives = 81/152 (53%), Gaps = 4/152 (2%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP+ +PR +P SP Y SP + + + +Y+P SP Y TSP YS
Sbjct: 1801 SPSYSPS---SPRYTPQSPTYTPSSPSY--------SPSSPSYSPTSPKYTPTSP--SYS 1847
Query: 257 PSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVA 427
PS+P +SP Y SP YSPTSP + P + SP +P Y PTSP Y+ V
Sbjct: 1848 PSSPEYTPTSPKYSPTSPKYSPTSP----KYSPTSPTYSPTTPKYSPTSPTYSPTSPVYT 1903
Query: 428 AAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
+ YSP+SP YSP SP Y + +SP Y P S
Sbjct: 1904 PTSPKYSPTSPTYSPTSPKY-SPTSPTYSPTS 1934
Score = 94.0 bits (232), Expect = 6e-18
Identities = 67/181 (37%), Positives = 94/181 (51%), Gaps = 13/181 (7%)
Frame = +2
Query: 17 SFSPIMSS-ADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGG 193
S+SP S + ++ R TP +P +P+ +P SP+SP Y+ SP++
Sbjct: 1796 SYSPTSPSYSPSSPRYTP--QSPTYTPS---SPSYSPSSPSYSPTSPKY--------TPT 1842
Query: 194 AGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYAS 364
+ +Y+P+SP Y TSP YSP++P + +SP Y SP YSPT+P + P + S
Sbjct: 1843 SPSYSPSSPEYTPTSP--KYSPTSPKYSPTSPKYSPTSPTYSPTTP----KYSPTSPTYS 1896
Query: 365 PQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAAS---------SPAYQPP 517
P SP Y PTSP Y+ + YSP+SP YSP SP Y+ S SP Y P
Sbjct: 1897 PTSPVYTPTSPKYS------PTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPT 1950
Query: 518 S 520
S
Sbjct: 1951 S 1951
Score = 92.0 bits (227), Expect = 2e-17
Identities = 62/167 (37%), Positives = 81/167 (48%), Gaps = 3/167 (1%)
Frame = +2
Query: 23 SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
SP S + + T + TP +P +P SP Y+ SP+
Sbjct: 1822 SPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYSPTSPK--------------- 1866
Query: 203 YAPASPAYMATSPGMGYSPSTPALAVSSPGYSPG---YSPTSPSVGARGGPAAGYASPQS 373
Y+P SP Y TSP YSP+TP + +SP YSP Y+PTSP + P + SP S
Sbjct: 1867 YSPTSPKYSPTSPT--YSPTTPKYSPTSPTYSPTSPVYTPTSP----KYSPTSPTYSPTS 1920
Query: 374 PGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQP 514
P Y PTSP Y+ + YSP+SP YSP SP Y + +SPA P
Sbjct: 1921 PKYSPTSPTYS---PTSPKGSTYSPTSPGYSPTSPTY-SLTSPAISP 1963
[73][TOP]
>UniRef100_UPI00005A0B22 PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide
A isoform 13 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B22
Length = 1722
Score = 106 bits (264), Expect = 1e-21
Identities = 69/177 (38%), Positives = 94/177 (53%), Gaps = 9/177 (5%)
Frame = +2
Query: 17 SFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGA 196
S+SP ++ A +PG TP +P SP SP Y+ SP + + +
Sbjct: 1456 SYSP---TSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNYSP-TSPSYSPTS 1511
Query: 197 GAYAPASPAYMATSPGMG-----YSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAA 352
+Y+P SP+Y TSP YSP++P+ + +SP YSP YSPTSPS P +
Sbjct: 1512 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY----SPTS 1567
Query: 353 GYASPQSPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
SP SP Y PTSP+Y+ + + YSP+SP+YSP SPNY + SSP Y P S
Sbjct: 1568 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNY-SPSSPKYSPTS 1623
Score = 102 bits (255), Expect = 1e-20
Identities = 62/145 (42%), Positives = 82/145 (56%), Gaps = 4/145 (2%)
Frame = +2
Query: 98 GRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALA 277
G +P SP SP Y SP GG + +Y+P SP+Y TSP YSP++P +
Sbjct: 1451 GAMSPSYSPTSPAYEPRSP-------GGYTPQSPSYSPTSPSYSPTSP--SYSPTSPNYS 1501
Query: 278 VSSPGY---SPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVAAAN-VYS 445
+SP Y SP YSPTSPS P + SP SP Y PTSP+Y+ + + YS
Sbjct: 1502 PTSPSYSPTSPSYSPTSPSY----SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1557
Query: 446 PSSPAYSPFSPNYAAASSPAYQPPS 520
P+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1558 PTSPSYSPTSPSY-SPTSPSYSPTS 1581
Score = 92.4 bits (228), Expect = 2e-17
Identities = 60/149 (40%), Positives = 78/149 (52%), Gaps = 3/149 (2%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP +P SP SP Y+ SP + + + Y+P SP Y TSP YS
Sbjct: 1588 SPSYSPT---SPSYSPTSPSYSPTSPNY--------SPSSPKYSPTSPKYSPTSPT--YS 1634
Query: 257 PSTPALAVSSPGYSPG---YSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVA 427
P+TP + +SP YSP Y+PTSP + P + SP SP Y PTSP Y+
Sbjct: 1635 PTTPKYSPTSPTYSPTSPVYTPTSP----KYSPTSPTYSPTSPKYSPTSPTYS---PTSP 1687
Query: 428 AANVYSPSSPAYSPFSPNYAAASSPAYQP 514
+ YSP+SP YSP SP Y + +SPA P
Sbjct: 1688 KGSTYSPTSPGYSPTSPTY-SLTSPAISP 1715
Score = 72.8 bits (177), Expect = 1e-11
Identities = 52/152 (34%), Positives = 68/152 (44%), Gaps = 3/152 (1%)
Frame = +2
Query: 23 SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
SP S + T +P +P+ SP SP Y+ +P+
Sbjct: 1595 SPSYSPTSPSYSPTSPNYSPSSPKYSPTSPKYSPTSPTYSPTTPK--------------- 1639
Query: 203 YAPASPAYMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYASPQS 373
Y+P SP Y TSP Y+P++P + +SP Y SP YSPTSP+ + Y SP S
Sbjct: 1640 YSPTSPTYSPTSP--VYTPTSPKYSPTSPTYSPTSPKYSPTSPTYSPTSPKGSTY-SPTS 1696
Query: 374 PGYVPTSPAYARPGTVVAAANVYSPSSPAYSP 469
PGY PTSP YS +SPA SP
Sbjct: 1697 PGYSPTSP-------------TYSLTSPAISP 1715
Score = 68.6 bits (166), Expect = 3e-10
Identities = 45/118 (38%), Positives = 60/118 (50%), Gaps = 1/118 (0%)
Frame = +2
Query: 170 LGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSPGYSPTSPSVGARGGPA 349
LG G G + A + YSP++PA SPG GY+P SPS
Sbjct: 1430 LGQLAPAGTGCFDLLLDAEKCGAMSPSYSPTSPAYEPRSPG---GYTPQSPSY------- 1479
Query: 350 AGYASPQSPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
SP SP Y PTSP+Y+ + + YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1480 ----SPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 1532
[74][TOP]
>UniRef100_UPI0001B7A25C UPI0001B7A25C related cluster n=1 Tax=Rattus norvegicus
RepID=UPI0001B7A25C
Length = 1968
Score = 106 bits (264), Expect = 1e-21
Identities = 69/181 (38%), Positives = 95/181 (52%), Gaps = 13/181 (7%)
Frame = +2
Query: 17 SFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGA 196
S+SP ++ A +PG TP +P SP SP Y+ SP + + +
Sbjct: 1594 SYSP---TSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNYSP-TSPSYSPTS 1649
Query: 197 GAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARG---GPAAGY 358
+Y+P SP+Y TSP YSP++P+ + +SP YSP YSPTSPS P +
Sbjct: 1650 PSYSPTSPSYSPTSPS--YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1707
Query: 359 ASPQSPGYVPTSPAYARPGTVVAAANV-YSPSSPAYSPFSPNYAAAS------SPAYQPP 517
SP SP Y PTSP+Y+ + + YSP+SP+YSP SPNY+ S SP+Y P
Sbjct: 1708 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPNYTPTSPSYSPT 1767
Query: 518 S 520
S
Sbjct: 1768 S 1768
Score = 100 bits (250), Expect = 5e-20
Identities = 64/158 (40%), Positives = 84/158 (53%), Gaps = 10/158 (6%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP +P SP SP Y+ SP + + + +Y+P SP+Y TSP YS
Sbjct: 1656 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 1702
Query: 257 PSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPG-TVV 424
P++P+ + +SP YSP YSPTSPS P + SP SP Y PTSP Y+
Sbjct: 1703 PTSPSYSPTSPSYSPTSPSYSPTSPSYS----PTSPSYSPTSPSYSPTSPNYSPTSPNYT 1758
Query: 425 AAANVYSPSSPAYSPFSPNYAAAS------SPAYQPPS 520
+ YSP+SP+YSP SPNY S SP+Y P S
Sbjct: 1759 PTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTS 1796
Score = 99.4 bits (246), Expect = 1e-19
Identities = 63/152 (41%), Positives = 83/152 (54%), Gaps = 4/152 (2%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP +P SP SP Y+ SP + + + Y+P SP Y TSP YS
Sbjct: 1719 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPNYSPTSPNYTPTSPS--YS 1765
Query: 257 PSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYA-RPGTVV 424
P++P+ + +SP Y SP YSPTSPS P + SP SP Y P+SP Y + T
Sbjct: 1766 PTSPSYSPTSPNYTPTSPNYSPTSPSYS----PTSPSYSPTSPSYSPSSPRYTPQSPTYT 1821
Query: 425 AAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
++ YSPSSP+YSP SP Y +SP+Y P S
Sbjct: 1822 PSSPSYSPSSPSYSPTSPKY-TPTSPSYSPSS 1852
Score = 99.0 bits (245), Expect = 2e-19
Identities = 74/182 (40%), Positives = 97/182 (53%), Gaps = 18/182 (9%)
Frame = +2
Query: 29 IMSSADAAGRATPGRMTPGR--SPAGRFTPRMSP----ASPGYAAMSPRFGGGLGGGPAG 190
I ++ G A P M G SP G +P M+P A+P Y A SP G G+ G AG
Sbjct: 1488 IPTNIPGLGAAGPTGMFFGSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGDGMTPGAAG 1547
Query: 191 -------GAGAYAPA-SPAYMATSPGMGYSPSTPALAVSSPG--YSPGYSPTSPSVGARG 340
A ++P SPA+ T PG SP + + SPG SP YSPTSP+ R
Sbjct: 1548 FSPSAASDASGFSPGYSPAWSPT-PGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPR- 1605
Query: 341 GPAAGYASPQSPGYVPTSPAYA--RPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQP 514
+ G +PQSP Y PTSP+Y+ P + N YSP+SP+YSP SP+Y + +SP+Y P
Sbjct: 1606 --SPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPN-YSPTSPSYSPTSPSY-SPTSPSYSP 1661
Query: 515 PS 520
S
Sbjct: 1662 TS 1663
Score = 96.7 bits (239), Expect = 9e-19
Identities = 62/152 (40%), Positives = 81/152 (53%), Gaps = 4/152 (2%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP+ +PR +P SP Y SP + + + +Y+P SP Y TSP YS
Sbjct: 1803 SPSYSPS---SPRYTPQSPTYTPSSPSY--------SPSSPSYSPTSPKYTPTSP--SYS 1849
Query: 257 PSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVA 427
PS+P +SP Y SP YSPTSP + P + SP +P Y PTSP Y+ V
Sbjct: 1850 PSSPEYTPTSPKYSPTSPKYSPTSP----KYSPTSPTYSPTTPKYSPTSPTYSPTSPVYT 1905
Query: 428 AAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
+ YSP+SP YSP SP Y + +SP Y P S
Sbjct: 1906 PTSPKYSPTSPTYSPTSPKY-SPTSPTYSPTS 1936
Score = 94.0 bits (232), Expect = 6e-18
Identities = 67/181 (37%), Positives = 94/181 (51%), Gaps = 13/181 (7%)
Frame = +2
Query: 17 SFSPIMSS-ADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGG 193
S+SP S + ++ R TP +P +P+ +P SP+SP Y+ SP++
Sbjct: 1798 SYSPTSPSYSPSSPRYTP--QSPTYTPS---SPSYSPSSPSYSPTSPKY--------TPT 1844
Query: 194 AGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYAS 364
+ +Y+P+SP Y TSP YSP++P + +SP Y SP YSPT+P + P + S
Sbjct: 1845 SPSYSPSSPEYTPTSP--KYSPTSPKYSPTSPKYSPTSPTYSPTTP----KYSPTSPTYS 1898
Query: 365 PQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAAS---------SPAYQPP 517
P SP Y PTSP Y+ + YSP+SP YSP SP Y+ S SP Y P
Sbjct: 1899 PTSPVYTPTSPKYS------PTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPT 1952
Query: 518 S 520
S
Sbjct: 1953 S 1953
Score = 92.0 bits (227), Expect = 2e-17
Identities = 62/167 (37%), Positives = 81/167 (48%), Gaps = 3/167 (1%)
Frame = +2
Query: 23 SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
SP S + + T + TP +P +P SP Y+ SP+
Sbjct: 1824 SPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYSPTSPK--------------- 1868
Query: 203 YAPASPAYMATSPGMGYSPSTPALAVSSPGYSPG---YSPTSPSVGARGGPAAGYASPQS 373
Y+P SP Y TSP YSP+TP + +SP YSP Y+PTSP + P + SP S
Sbjct: 1869 YSPTSPKYSPTSPT--YSPTTPKYSPTSPTYSPTSPVYTPTSP----KYSPTSPTYSPTS 1922
Query: 374 PGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQP 514
P Y PTSP Y+ + YSP+SP YSP SP Y + +SPA P
Sbjct: 1923 PKYSPTSPTYS---PTSPKGSTYSPTSPGYSPTSPTY-SLTSPAISP 1965
[75][TOP]
>UniRef100_UPI0001B7A25B UPI0001B7A25B related cluster n=1 Tax=Rattus norvegicus
RepID=UPI0001B7A25B
Length = 1932
Score = 106 bits (264), Expect = 1e-21
Identities = 69/181 (38%), Positives = 95/181 (52%), Gaps = 13/181 (7%)
Frame = +2
Query: 17 SFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGA 196
S+SP ++ A +PG TP +P SP SP Y+ SP + + +
Sbjct: 1554 SYSP---TSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNYSP-TSPSYSPTS 1609
Query: 197 GAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARG---GPAAGY 358
+Y+P SP+Y TSP YSP++P+ + +SP YSP YSPTSPS P +
Sbjct: 1610 PSYSPTSPSYSPTSPS--YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1667
Query: 359 ASPQSPGYVPTSPAYARPGTVVAAANV-YSPSSPAYSPFSPNYAAAS------SPAYQPP 517
SP SP Y PTSP+Y+ + + YSP+SP+YSP SPNY+ S SP+Y P
Sbjct: 1668 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPNYTPTSPSYSPT 1727
Query: 518 S 520
S
Sbjct: 1728 S 1728
Score = 100 bits (250), Expect = 5e-20
Identities = 64/158 (40%), Positives = 84/158 (53%), Gaps = 10/158 (6%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP +P SP SP Y+ SP + + + +Y+P SP+Y TSP YS
Sbjct: 1616 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 1662
Query: 257 PSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPG-TVV 424
P++P+ + +SP YSP YSPTSPS P + SP SP Y PTSP Y+
Sbjct: 1663 PTSPSYSPTSPSYSPTSPSYSPTSPSYS----PTSPSYSPTSPSYSPTSPNYSPTSPNYT 1718
Query: 425 AAANVYSPSSPAYSPFSPNYAAAS------SPAYQPPS 520
+ YSP+SP+YSP SPNY S SP+Y P S
Sbjct: 1719 PTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTS 1756
Score = 99.4 bits (246), Expect = 1e-19
Identities = 63/152 (41%), Positives = 83/152 (54%), Gaps = 4/152 (2%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP +P SP SP Y+ SP + + + Y+P SP Y TSP YS
Sbjct: 1679 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPNYSPTSPNYTPTSPS--YS 1725
Query: 257 PSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYA-RPGTVV 424
P++P+ + +SP Y SP YSPTSPS P + SP SP Y P+SP Y + T
Sbjct: 1726 PTSPSYSPTSPNYTPTSPNYSPTSPSYS----PTSPSYSPTSPSYSPSSPRYTPQSPTYT 1781
Query: 425 AAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
++ YSPSSP+YSP SP Y +SP+Y P S
Sbjct: 1782 PSSPSYSPSSPSYSPTSPKY-TPTSPSYSPSS 1812
Score = 96.7 bits (239), Expect = 9e-19
Identities = 71/171 (41%), Positives = 95/171 (55%), Gaps = 2/171 (1%)
Frame = +2
Query: 14 ASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAA-MSPRFGGGLGGGPAG 190
A FSP +S DA+G +PG SPA TP SP SPG ++ P GG +
Sbjct: 1506 AGFSPSAAS-DASG------FSPGYSPAWSPTPG-SPGSPGPSSPYIPSPGGAM------ 1551
Query: 191 GAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSPGYSPTSPSVGARGGPAAGYASPQ 370
+ +Y+P SPAY SPG GY+P +P+ + +SP YSP TSPS SP
Sbjct: 1552 -SPSYSPTSPAYEPRSPG-GYTPQSPSYSPTSPSYSP----TSPSY-----------SPT 1594
Query: 371 SPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
SP Y PTSP+Y+ + + YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1595 SPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 1644
Score = 96.7 bits (239), Expect = 9e-19
Identities = 62/152 (40%), Positives = 81/152 (53%), Gaps = 4/152 (2%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP+ +PR +P SP Y SP + + + +Y+P SP Y TSP YS
Sbjct: 1763 SPSYSPS---SPRYTPQSPTYTPSSPSY--------SPSSPSYSPTSPKYTPTSP--SYS 1809
Query: 257 PSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVA 427
PS+P +SP Y SP YSPTSP + P + SP +P Y PTSP Y+ V
Sbjct: 1810 PSSPEYTPTSPKYSPTSPKYSPTSP----KYSPTSPTYSPTTPKYSPTSPTYSPTSPVYT 1865
Query: 428 AAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
+ YSP+SP YSP SP Y + +SP Y P S
Sbjct: 1866 PTSPKYSPTSPTYSPTSPKY-SPTSPTYSPTS 1896
Score = 94.0 bits (232), Expect = 6e-18
Identities = 67/181 (37%), Positives = 94/181 (51%), Gaps = 13/181 (7%)
Frame = +2
Query: 17 SFSPIMSS-ADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGG 193
S+SP S + ++ R TP +P +P+ +P SP+SP Y+ SP++
Sbjct: 1758 SYSPTSPSYSPSSPRYTP--QSPTYTPS---SPSYSPSSPSYSPTSPKY--------TPT 1804
Query: 194 AGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYAS 364
+ +Y+P+SP Y TSP YSP++P + +SP Y SP YSPT+P + P + S
Sbjct: 1805 SPSYSPSSPEYTPTSP--KYSPTSPKYSPTSPKYSPTSPTYSPTTP----KYSPTSPTYS 1858
Query: 365 PQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAAS---------SPAYQPP 517
P SP Y PTSP Y+ + YSP+SP YSP SP Y+ S SP Y P
Sbjct: 1859 PTSPVYTPTSPKYS------PTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPT 1912
Query: 518 S 520
S
Sbjct: 1913 S 1913
Score = 92.0 bits (227), Expect = 2e-17
Identities = 62/167 (37%), Positives = 81/167 (48%), Gaps = 3/167 (1%)
Frame = +2
Query: 23 SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
SP S + + T + TP +P +P SP Y+ SP+
Sbjct: 1784 SPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYSPTSPK--------------- 1828
Query: 203 YAPASPAYMATSPGMGYSPSTPALAVSSPGYSPG---YSPTSPSVGARGGPAAGYASPQS 373
Y+P SP Y TSP YSP+TP + +SP YSP Y+PTSP + P + SP S
Sbjct: 1829 YSPTSPKYSPTSPT--YSPTTPKYSPTSPTYSPTSPVYTPTSP----KYSPTSPTYSPTS 1882
Query: 374 PGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQP 514
P Y PTSP Y+ + YSP+SP YSP SP Y + +SPA P
Sbjct: 1883 PKYSPTSPTYS---PTSPKGSTYSPTSPGYSPTSPTY-SLTSPAISP 1925
Score = 73.6 bits (179), Expect = 8e-12
Identities = 49/111 (44%), Positives = 63/111 (56%), Gaps = 16/111 (14%)
Frame = +2
Query: 236 SPGM-GYSPSTPALAVSSPGYSPGYSPT-SPSVGARG--GPAAGY----ASPQSPGYVPT 391
+PG G+SPS A + G+SPGYSP SP+ G+ G GP++ Y SP Y PT
Sbjct: 1502 TPGAAGFSPSA---ASDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPT 1558
Query: 392 SPAY--ARPGTVVAAANVYSPSSPAYSPFSPNYAAAS------SPAYQPPS 520
SPAY PG + YSP+SP+YSP SP+Y+ S SP+Y P S
Sbjct: 1559 SPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTS 1609
Score = 70.1 bits (170), Expect = 9e-11
Identities = 55/140 (39%), Positives = 72/140 (51%), Gaps = 17/140 (12%)
Frame = +2
Query: 152 PRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPS---TPALAVSSPGYSP------- 301
P G G GA ++P S A A+ GYSP+ TP + SPG S
Sbjct: 1491 PGLGAAGRSGMTPGAAGFSP-SAASDASGFSPGYSPAWSPTPG-SPGSPGPSSPYIPSPG 1548
Query: 302 -----GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYA--RPGTVVAAANVYSPSSPA 460
YSPTSP+ R + G +PQSP Y PTSP+Y+ P + N YSP+SP+
Sbjct: 1549 GAMSPSYSPTSPAYEPR---SPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPN-YSPTSPS 1604
Query: 461 YSPFSPNYAAASSPAYQPPS 520
YSP SP+Y + +SP+Y P S
Sbjct: 1605 YSPTSPSY-SPTSPSYSPTS 1623
[76][TOP]
>UniRef100_UPI0000DA33D8 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
(RPB1) n=1 Tax=Rattus norvegicus RepID=UPI0000DA33D8
Length = 1970
Score = 106 bits (264), Expect = 1e-21
Identities = 69/181 (38%), Positives = 95/181 (52%), Gaps = 13/181 (7%)
Frame = +2
Query: 17 SFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGA 196
S+SP ++ A +PG TP +P SP SP Y+ SP + + +
Sbjct: 1592 SYSP---TSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNYSP-TSPSYSPTS 1647
Query: 197 GAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARG---GPAAGY 358
+Y+P SP+Y TSP YSP++P+ + +SP YSP YSPTSPS P +
Sbjct: 1648 PSYSPTSPSYSPTSPS--YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1705
Query: 359 ASPQSPGYVPTSPAYARPGTVVAAANV-YSPSSPAYSPFSPNYAAAS------SPAYQPP 517
SP SP Y PTSP+Y+ + + YSP+SP+YSP SPNY+ S SP+Y P
Sbjct: 1706 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPNYTPTSPSYSPT 1765
Query: 518 S 520
S
Sbjct: 1766 S 1766
Score = 100 bits (250), Expect = 5e-20
Identities = 64/158 (40%), Positives = 84/158 (53%), Gaps = 10/158 (6%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP +P SP SP Y+ SP + + + +Y+P SP+Y TSP YS
Sbjct: 1654 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 1700
Query: 257 PSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPG-TVV 424
P++P+ + +SP YSP YSPTSPS P + SP SP Y PTSP Y+
Sbjct: 1701 PTSPSYSPTSPSYSPTSPSYSPTSPSYS----PTSPSYSPTSPSYSPTSPNYSPTSPNYT 1756
Query: 425 AAANVYSPSSPAYSPFSPNYAAAS------SPAYQPPS 520
+ YSP+SP+YSP SPNY S SP+Y P S
Sbjct: 1757 PTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTS 1794
Score = 99.4 bits (246), Expect = 1e-19
Identities = 74/182 (40%), Positives = 97/182 (53%), Gaps = 18/182 (9%)
Frame = +2
Query: 29 IMSSADAAGRATPGRMTPGR--SPAGRFTPRMSP----ASPGYAAMSPRFGGGLGGGPAG 190
I ++ G A P M G SP G +P M+P A+P Y A SP G G+ G AG
Sbjct: 1486 IPTNIPGLGAAGPTGMFFGSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGSGMTPGAAG 1545
Query: 191 -------GAGAYAPA-SPAYMATSPGMGYSPSTPALAVSSPG--YSPGYSPTSPSVGARG 340
A ++P SPA+ T PG SP + + SPG SP YSPTSP+ R
Sbjct: 1546 FSPSAASDASGFSPGYSPAWSPT-PGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPR- 1603
Query: 341 GPAAGYASPQSPGYVPTSPAYA--RPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQP 514
+ G +PQSP Y PTSP+Y+ P + N YSP+SP+YSP SP+Y + +SP+Y P
Sbjct: 1604 --SPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPN-YSPTSPSYSPTSPSY-SPTSPSYSP 1659
Query: 515 PS 520
S
Sbjct: 1660 TS 1661
Score = 99.4 bits (246), Expect = 1e-19
Identities = 63/152 (41%), Positives = 83/152 (54%), Gaps = 4/152 (2%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP +P SP SP Y+ SP + + + Y+P SP Y TSP YS
Sbjct: 1717 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPNYSPTSPNYTPTSPS--YS 1763
Query: 257 PSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYA-RPGTVV 424
P++P+ + +SP Y SP YSPTSPS P + SP SP Y P+SP Y + T
Sbjct: 1764 PTSPSYSPTSPNYTPTSPNYSPTSPSYS----PTSPSYSPTSPSYSPSSPRYTPQSPTYT 1819
Query: 425 AAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
++ YSPSSP+YSP SP Y +SP+Y P S
Sbjct: 1820 PSSPSYSPSSPSYSPTSPKY-TPTSPSYSPSS 1850
Score = 96.7 bits (239), Expect = 9e-19
Identities = 62/152 (40%), Positives = 81/152 (53%), Gaps = 4/152 (2%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP+ +PR +P SP Y SP + + + +Y+P SP Y TSP YS
Sbjct: 1801 SPSYSPS---SPRYTPQSPTYTPSSPSY--------SPSSPSYSPTSPKYTPTSP--SYS 1847
Query: 257 PSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVA 427
PS+P +SP Y SP YSPTSP + P + SP +P Y PTSP Y+ V
Sbjct: 1848 PSSPEYTPTSPKYSPTSPKYSPTSP----KYSPTSPTYSPTTPKYSPTSPTYSPTSPVYT 1903
Query: 428 AAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
+ YSP+SP YSP SP Y + +SP Y P S
Sbjct: 1904 PTSPKYSPTSPTYSPTSPKY-SPTSPTYSPTS 1934
Score = 94.0 bits (232), Expect = 6e-18
Identities = 67/181 (37%), Positives = 94/181 (51%), Gaps = 13/181 (7%)
Frame = +2
Query: 17 SFSPIMSS-ADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGG 193
S+SP S + ++ R TP +P +P+ +P SP+SP Y+ SP++
Sbjct: 1796 SYSPTSPSYSPSSPRYTP--QSPTYTPS---SPSYSPSSPSYSPTSPKY--------TPT 1842
Query: 194 AGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYAS 364
+ +Y+P+SP Y TSP YSP++P + +SP Y SP YSPT+P + P + S
Sbjct: 1843 SPSYSPSSPEYTPTSP--KYSPTSPKYSPTSPKYSPTSPTYSPTTP----KYSPTSPTYS 1896
Query: 365 PQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAAS---------SPAYQPP 517
P SP Y PTSP Y+ + YSP+SP YSP SP Y+ S SP Y P
Sbjct: 1897 PTSPVYTPTSPKYS------PTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPT 1950
Query: 518 S 520
S
Sbjct: 1951 S 1951
Score = 92.0 bits (227), Expect = 2e-17
Identities = 62/167 (37%), Positives = 81/167 (48%), Gaps = 3/167 (1%)
Frame = +2
Query: 23 SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
SP S + + T + TP +P +P SP Y+ SP+
Sbjct: 1822 SPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYSPTSPK--------------- 1866
Query: 203 YAPASPAYMATSPGMGYSPSTPALAVSSPGYSPG---YSPTSPSVGARGGPAAGYASPQS 373
Y+P SP Y TSP YSP+TP + +SP YSP Y+PTSP + P + SP S
Sbjct: 1867 YSPTSPKYSPTSPT--YSPTTPKYSPTSPTYSPTSPVYTPTSP----KYSPTSPTYSPTS 1920
Query: 374 PGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQP 514
P Y PTSP Y+ + YSP+SP YSP SP Y + +SPA P
Sbjct: 1921 PKYSPTSPTYS---PTSPKGSTYSPTSPGYSPTSPTY-SLTSPAISP 1963
[77][TOP]
>UniRef100_O35559 DNA-directed RNA polymerase n=1 Tax=Cricetulus griseus
RepID=O35559_CRIGR
Length = 1970
Score = 106 bits (264), Expect = 1e-21
Identities = 69/181 (38%), Positives = 95/181 (52%), Gaps = 13/181 (7%)
Frame = +2
Query: 17 SFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGA 196
S+SP ++ A +PG TP +P SP SP Y+ SP + + +
Sbjct: 1592 SYSP---TSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNYSP-TSPSYSPTS 1647
Query: 197 GAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARG---GPAAGY 358
+Y+P SP+Y TSP YSP++P+ + +SP YSP YSPTSPS P +
Sbjct: 1648 PSYSPTSPSYSPTSPS--YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1705
Query: 359 ASPQSPGYVPTSPAYARPGTVVAAANV-YSPSSPAYSPFSPNYAAAS------SPAYQPP 517
SP SP Y PTSP+Y+ + + YSP+SP+YSP SPNY+ S SP+Y P
Sbjct: 1706 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPNYTPTSPSYSPT 1765
Query: 518 S 520
S
Sbjct: 1766 S 1766
Score = 100 bits (250), Expect = 5e-20
Identities = 64/158 (40%), Positives = 84/158 (53%), Gaps = 10/158 (6%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP +P SP SP Y+ SP + + + +Y+P SP+Y TSP YS
Sbjct: 1654 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 1700
Query: 257 PSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPG-TVV 424
P++P+ + +SP YSP YSPTSPS P + SP SP Y PTSP Y+
Sbjct: 1701 PTSPSYSPTSPSYSPTSPSYSPTSPSYS----PTSPSYSPTSPSYSPTSPNYSPTSPNYT 1756
Query: 425 AAANVYSPSSPAYSPFSPNYAAAS------SPAYQPPS 520
+ YSP+SP+YSP SPNY S SP+Y P S
Sbjct: 1757 PTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTS 1794
Score = 99.4 bits (246), Expect = 1e-19
Identities = 74/182 (40%), Positives = 97/182 (53%), Gaps = 18/182 (9%)
Frame = +2
Query: 29 IMSSADAAGRATPGRMTPGR--SPAGRFTPRMSP----ASPGYAAMSPRFGGGLGGGPAG 190
I ++ G A P M G SP G +P M+P A+P Y A SP G G+ G AG
Sbjct: 1486 IPTNIPGLGAAGPTGMFFGSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGSGMTPGAAG 1545
Query: 191 -------GAGAYAPA-SPAYMATSPGMGYSPSTPALAVSSPG--YSPGYSPTSPSVGARG 340
A ++P SPA+ T PG SP + + SPG SP YSPTSP+ R
Sbjct: 1546 FSPSAASDASGFSPGYSPAWSPT-PGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPR- 1603
Query: 341 GPAAGYASPQSPGYVPTSPAYA--RPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQP 514
+ G +PQSP Y PTSP+Y+ P + N YSP+SP+YSP SP+Y + +SP+Y P
Sbjct: 1604 --SPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPN-YSPTSPSYSPTSPSY-SPTSPSYSP 1659
Query: 515 PS 520
S
Sbjct: 1660 TS 1661
Score = 99.4 bits (246), Expect = 1e-19
Identities = 63/152 (41%), Positives = 83/152 (54%), Gaps = 4/152 (2%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP +P SP SP Y+ SP + + + Y+P SP Y TSP YS
Sbjct: 1717 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPNYSPTSPNYTPTSPS--YS 1763
Query: 257 PSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYA-RPGTVV 424
P++P+ + +SP Y SP YSPTSPS P + SP SP Y P+SP Y + T
Sbjct: 1764 PTSPSYSPTSPNYTPTSPNYSPTSPSYS----PTSPSYSPTSPSYSPSSPRYTPQSPTYT 1819
Query: 425 AAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
++ YSPSSP+YSP SP Y +SP+Y P S
Sbjct: 1820 PSSPSYSPSSPSYSPTSPKY-TPTSPSYSPSS 1850
Score = 96.7 bits (239), Expect = 9e-19
Identities = 62/152 (40%), Positives = 81/152 (53%), Gaps = 4/152 (2%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP+ +PR +P SP Y SP + + + +Y+P SP Y TSP YS
Sbjct: 1801 SPSYSPS---SPRYTPQSPTYTPSSPSY--------SPSSPSYSPTSPKYTPTSP--SYS 1847
Query: 257 PSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVA 427
PS+P +SP Y SP YSPTSP + P + SP +P Y PTSP Y+ V
Sbjct: 1848 PSSPEYTPTSPKYSPTSPKYSPTSP----KYSPTSPTYSPTTPKYSPTSPTYSPTSPVYT 1903
Query: 428 AAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
+ YSP+SP YSP SP Y + +SP Y P S
Sbjct: 1904 PTSPKYSPTSPTYSPTSPKY-SPTSPTYSPTS 1934
Score = 94.0 bits (232), Expect = 6e-18
Identities = 67/181 (37%), Positives = 94/181 (51%), Gaps = 13/181 (7%)
Frame = +2
Query: 17 SFSPIMSS-ADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGG 193
S+SP S + ++ R TP +P +P+ +P SP+SP Y+ SP++
Sbjct: 1796 SYSPTSPSYSPSSPRYTP--QSPTYTPS---SPSYSPSSPSYSPTSPKY--------TPT 1842
Query: 194 AGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYAS 364
+ +Y+P+SP Y TSP YSP++P + +SP Y SP YSPT+P + P + S
Sbjct: 1843 SPSYSPSSPEYTPTSP--KYSPTSPKYSPTSPKYSPTSPTYSPTTP----KYSPTSPTYS 1896
Query: 365 PQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAAS---------SPAYQPP 517
P SP Y PTSP Y+ + YSP+SP YSP SP Y+ S SP Y P
Sbjct: 1897 PTSPVYTPTSPKYS------PTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPT 1950
Query: 518 S 520
S
Sbjct: 1951 S 1951
Score = 92.0 bits (227), Expect = 2e-17
Identities = 62/167 (37%), Positives = 81/167 (48%), Gaps = 3/167 (1%)
Frame = +2
Query: 23 SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
SP S + + T + TP +P +P SP Y+ SP+
Sbjct: 1822 SPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYSPTSPK--------------- 1866
Query: 203 YAPASPAYMATSPGMGYSPSTPALAVSSPGYSPG---YSPTSPSVGARGGPAAGYASPQS 373
Y+P SP Y TSP YSP+TP + +SP YSP Y+PTSP + P + SP S
Sbjct: 1867 YSPTSPKYSPTSPT--YSPTTPKYSPTSPTYSPTSPVYTPTSP----KYSPTSPTYSPTS 1920
Query: 374 PGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQP 514
P Y PTSP Y+ + YSP+SP YSP SP Y + +SPA P
Sbjct: 1921 PKYSPTSPTYS---PTSPKGSTYSPTSPGYSPTSPTY-SLTSPAISP 1963
[78][TOP]
>UniRef100_O08847 DNA-directed RNA polymerase n=1 Tax=Mus musculus RepID=O08847_MOUSE
Length = 1966
Score = 106 bits (264), Expect = 1e-21
Identities = 69/181 (38%), Positives = 95/181 (52%), Gaps = 13/181 (7%)
Frame = +2
Query: 17 SFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGA 196
S+SP ++ A +PG TP +P SP SP Y+ SP + + +
Sbjct: 1592 SYSP---TSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNYSP-TSPSYSPTS 1647
Query: 197 GAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARG---GPAAGY 358
+Y+P SP+Y TSP YSP++P+ + +SP YSP YSPTSPS P +
Sbjct: 1648 PSYSPTSPSYSPTSPS--YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1705
Query: 359 ASPQSPGYVPTSPAYARPGTVVAAANV-YSPSSPAYSPFSPNYAAAS------SPAYQPP 517
SP SP Y PTSP+Y+ + + YSP+SP+YSP SPNY+ S SP+Y P
Sbjct: 1706 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPNYTPTSPSYSPT 1765
Query: 518 S 520
S
Sbjct: 1766 S 1766
Score = 100 bits (250), Expect = 5e-20
Identities = 64/158 (40%), Positives = 84/158 (53%), Gaps = 10/158 (6%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP +P SP SP Y+ SP + + + +Y+P SP+Y TSP YS
Sbjct: 1654 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 1700
Query: 257 PSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPG-TVV 424
P++P+ + +SP YSP YSPTSPS P + SP SP Y PTSP Y+
Sbjct: 1701 PTSPSYSPTSPSYSPTSPSYSPTSPSYS----PTSPSYSPTSPSYSPTSPNYSPTSPNYT 1756
Query: 425 AAANVYSPSSPAYSPFSPNYAAAS------SPAYQPPS 520
+ YSP+SP+YSP SPNY S SP+Y P S
Sbjct: 1757 PTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTS 1794
Score = 99.4 bits (246), Expect = 1e-19
Identities = 74/182 (40%), Positives = 97/182 (53%), Gaps = 18/182 (9%)
Frame = +2
Query: 29 IMSSADAAGRATPGRMTPGR--SPAGRFTPRMSP----ASPGYAAMSPRFGGGLGGGPAG 190
I ++ G A P M G SP G +P M+P A+P Y A SP G G+ G AG
Sbjct: 1486 IPTNIPGLGAAGPTGMFFGSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGSGMTPGAAG 1545
Query: 191 -------GAGAYAPA-SPAYMATSPGMGYSPSTPALAVSSPG--YSPGYSPTSPSVGARG 340
A ++P SPA+ T PG SP + + SPG SP YSPTSP+ R
Sbjct: 1546 FSPSAASDASGFSPGYSPAWSPT-PGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPR- 1603
Query: 341 GPAAGYASPQSPGYVPTSPAYA--RPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQP 514
+ G +PQSP Y PTSP+Y+ P + N YSP+SP+YSP SP+Y + +SP+Y P
Sbjct: 1604 --SPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPN-YSPTSPSYSPTSPSY-SPTSPSYSP 1659
Query: 515 PS 520
S
Sbjct: 1660 TS 1661
Score = 99.4 bits (246), Expect = 1e-19
Identities = 63/152 (41%), Positives = 83/152 (54%), Gaps = 4/152 (2%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP +P SP SP Y+ SP + + + Y+P SP Y TSP YS
Sbjct: 1717 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPNYSPTSPNYTPTSPS--YS 1763
Query: 257 PSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYA-RPGTVV 424
P++P+ + +SP Y SP YSPTSPS P + SP SP Y P+SP Y + T
Sbjct: 1764 PTSPSYSPTSPNYTPTSPNYSPTSPSYS----PTSPSYSPTSPSYSPSSPRYTPQSPTYT 1819
Query: 425 AAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
++ YSPSSP+YSP SP Y +SP+Y P S
Sbjct: 1820 PSSPSYSPSSPSYSPTSPKY-TPTSPSYSPSS 1850
Score = 96.7 bits (239), Expect = 9e-19
Identities = 62/152 (40%), Positives = 81/152 (53%), Gaps = 4/152 (2%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP+ +PR +P SP Y SP + + + +Y+P SP Y TSP YS
Sbjct: 1801 SPSYSPS---SPRYTPQSPTYTPSSPSY--------SPSSPSYSPTSPKYTPTSP--SYS 1847
Query: 257 PSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVA 427
PS+P +SP Y SP YSPTSP + P + SP +P Y PTSP Y+ V
Sbjct: 1848 PSSPEYTPASPKYSPTSPKYSPTSP----KYSPTSPTYSPTTPKYSPTSPTYSPTSPVYT 1903
Query: 428 AAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
+ YSP+SP YSP SP Y + +SP Y P S
Sbjct: 1904 PTSPKYSPTSPTYSPTSPKY-SPTSPTYSPTS 1934
Score = 92.8 bits (229), Expect = 1e-17
Identities = 67/174 (38%), Positives = 92/174 (52%), Gaps = 6/174 (3%)
Frame = +2
Query: 17 SFSPIMSS-ADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGG 193
S+SP S + ++ R TP +P +P+ +P SP+SP Y+ SP++ +
Sbjct: 1796 SYSPTSPSYSPSSPRYTP--QSPTYTPS---SPSYSPSSPSYSPTSPKY-TPTSPSYSPS 1849
Query: 194 AGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYS---PGYSPTSPSVGARGGPAAGYAS 364
+ Y PASP Y TSP YSP++P + +SP YS P YSPTSP+ P + +
Sbjct: 1850 SPEYTPASPKYSPTSP--KYSPTSPKYSPTSPTYSPTTPKYSPTSPTY----SPTSPVYT 1903
Query: 365 PQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAAS--SPAYQPPS 520
P SP Y PTSP Y+ + YSP+SP YSP SP + S SP Y P S
Sbjct: 1904 PTSPKYSPTSPTYS------PTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTS 1951
Score = 91.3 bits (225), Expect = 4e-17
Identities = 60/161 (37%), Positives = 78/161 (48%), Gaps = 3/161 (1%)
Frame = +2
Query: 23 SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
SP S + + T + TP +P +PASP Y+ SP+
Sbjct: 1822 SPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPASPKYSPTSPK--------------- 1866
Query: 203 YAPASPAYMATSPGMGYSPSTPALAVSSPGYSPG---YSPTSPSVGARGGPAAGYASPQS 373
Y+P SP Y TSP YSP+TP + +SP YSP Y+PTSP + P + SP S
Sbjct: 1867 YSPTSPKYSPTSPT--YSPTTPKYSPTSPTYSPTSPVYTPTSP----KYSPTSPTYSPTS 1920
Query: 374 PGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAAS 496
P Y PTSP Y+ + YSP+SP YSP SP Y+ S
Sbjct: 1921 PKYSPTSPTYS---PTSPKGSTYSPTSPGYSPTSPTYSLTS 1958
Score = 67.4 bits (163), Expect = 6e-10
Identities = 44/111 (39%), Positives = 59/111 (53%), Gaps = 3/111 (2%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP +P+ SP SP Y+ +P++ + + Y+P SP Y TSP YS
Sbjct: 1864 SPKYSPT---SPKYSPTSPTYSPTTPKY--------SPTSPTYSPTSPVYTPTSPK--YS 1910
Query: 257 PSTPALAVSSPGYSPG---YSPTSPSVGARGGPAAGYASPQSPGYVPTSPA 400
P++P + +SP YSP YSPTSP + GY SP SP Y TSPA
Sbjct: 1911 PTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGY-SPTSPTYSLTSPA 1960
[79][TOP]
>UniRef100_B4DET1 cDNA FLJ53860, highly similar to DNA-directed RNA polymerase II
largest subunit (EC 2.7.7.6) n=1 Tax=Homo sapiens
RepID=B4DET1_HUMAN
Length = 855
Score = 106 bits (264), Expect = 1e-21
Identities = 69/181 (38%), Positives = 95/181 (52%), Gaps = 13/181 (7%)
Frame = +2
Query: 17 SFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGA 196
S+SP ++ A +PG TP +P SP SP Y+ SP + + +
Sbjct: 491 SYSP---TSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNYSP-TSPSYSPTS 546
Query: 197 GAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARG---GPAAGY 358
+Y+P SP+Y TSP YSP++P+ + +SP YSP YSPTSPS P +
Sbjct: 547 PSYSPTSPSYSPTSPS--YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 604
Query: 359 ASPQSPGYVPTSPAYARPGTVVAAANV-YSPSSPAYSPFSPNYAAAS------SPAYQPP 517
SP SP Y PTSP+Y+ + + YSP+SP+YSP SPNY+ S SP+Y P
Sbjct: 605 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPNYTPTSPSYSPT 664
Query: 518 S 520
S
Sbjct: 665 S 665
Score = 100 bits (250), Expect = 5e-20
Identities = 64/158 (40%), Positives = 84/158 (53%), Gaps = 10/158 (6%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP +P SP SP Y+ SP + + + +Y+P SP+Y TSP YS
Sbjct: 553 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 599
Query: 257 PSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPG-TVV 424
P++P+ + +SP YSP YSPTSPS P + SP SP Y PTSP Y+
Sbjct: 600 PTSPSYSPTSPSYSPTSPSYSPTSPSYS----PTSPSYSPTSPSYSPTSPNYSPTSPNYT 655
Query: 425 AAANVYSPSSPAYSPFSPNYAAAS------SPAYQPPS 520
+ YSP+SP+YSP SPNY S SP+Y P S
Sbjct: 656 PTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTS 693
Score = 99.4 bits (246), Expect = 1e-19
Identities = 74/182 (40%), Positives = 97/182 (53%), Gaps = 18/182 (9%)
Frame = +2
Query: 29 IMSSADAAGRATPGRMTPGR--SPAGRFTPRMSP----ASPGYAAMSPRFGGGLGGGPAG 190
I ++ G A P M G SP G +P M+P A+P Y A SP G G+ G AG
Sbjct: 385 IPTNIPGLGAAGPTGMFFGSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGSGMTPGAAG 444
Query: 191 -------GAGAYAPA-SPAYMATSPGMGYSPSTPALAVSSPG--YSPGYSPTSPSVGARG 340
A ++P SPA+ T PG SP + + SPG SP YSPTSP+ R
Sbjct: 445 FSPSAASDASGFSPGYSPAWSPT-PGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPR- 502
Query: 341 GPAAGYASPQSPGYVPTSPAYA--RPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQP 514
+ G +PQSP Y PTSP+Y+ P + N YSP+SP+YSP SP+Y + +SP+Y P
Sbjct: 503 --SPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPN-YSPTSPSYSPTSPSY-SPTSPSYSP 558
Query: 515 PS 520
S
Sbjct: 559 TS 560
Score = 99.4 bits (246), Expect = 1e-19
Identities = 62/151 (41%), Positives = 84/151 (55%), Gaps = 3/151 (1%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP +P SP SP Y+ SP + + + +Y+P SP+Y TSP YS
Sbjct: 588 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 634
Query: 257 PSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVA 427
P++P+ + +SP YSP Y+PTSPS P + SP SP Y PTSP Y+
Sbjct: 635 PTSPSYSPTSPNYSPTSPNYTPTSPSYS----PTSPSYSPTSPNYTPTSPNYS------P 684
Query: 428 AANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
+ YSP+SP+YSP SP+Y + SSP Y P S
Sbjct: 685 TSPSYSPTSPSYSPTSPSY-SPSSPRYTPQS 714
Score = 95.9 bits (237), Expect = 2e-18
Identities = 59/151 (39%), Positives = 84/151 (55%), Gaps = 3/151 (1%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP +P SP SP Y+ SP + + +Y+P SP+Y TSP Y+
Sbjct: 630 SPSYSPT---SPSYSPTSPNYSPTSPNY--------TPTSPSYSPTSPSYSPTSPN--YT 676
Query: 257 PSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVA 427
P++P + +SP YSP YSPTSPS P++ +PQSP Y P+SP+Y+
Sbjct: 677 PTSPNYSPTSPSYSPTSPSYSPTSPSYS----PSSPRYTPQSPTYTPSSPSYS------P 726
Query: 428 AANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
++ YSP+SP Y+P SP Y + +SP Y P S
Sbjct: 727 SSPSYSPTSPKYTPTSPKY-SPTSPKYSPTS 756
Score = 94.0 bits (232), Expect = 6e-18
Identities = 60/152 (39%), Positives = 79/152 (51%), Gaps = 4/152 (2%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP +P SP SP Y+ SPR+ + Y P+SP+Y +SP YS
Sbjct: 686 SPSYSPT---SPSYSPTSPSYSPSSPRY--------TPQSPTYTPSSPSYSPSSP--SYS 732
Query: 257 PSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVA 427
P++P +SP Y SP YSPTSP + P + SP +P Y PTSP Y+ V
Sbjct: 733 PTSPKYTPTSPKYSPTSPKYSPTSP----KYSPTSPTYSPTTPKYSPTSPTYSPTSPVYT 788
Query: 428 AAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
+ YSP+ P YSP SP Y + +SP Y P S
Sbjct: 789 PTSPKYSPTGPTYSPTSPKY-SPTSPTYSPTS 819
Score = 93.2 bits (230), Expect = 1e-17
Identities = 68/175 (38%), Positives = 89/175 (50%), Gaps = 9/175 (5%)
Frame = +2
Query: 17 SFSPIMSS-ADAAGRATPGRMT-----PGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGG 178
S+SP S + ++ R TP T P SP+ +P SP SP Y SP++
Sbjct: 695 SYSPTSPSYSPSSPRYTPQSPTYTPSSPSYSPS---SPSYSPTSPKYTPTSPKY------ 745
Query: 179 GPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSPG---YSPTSPSVGARGGPA 349
+ + Y+P SP Y TSP YSP+TP + +SP YSP Y+PTSP + P
Sbjct: 746 --SPTSPKYSPTSPKYSPTSPT--YSPTTPKYSPTSPTYSPTSPVYTPTSP----KYSPT 797
Query: 350 AGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQP 514
SP SP Y PTSP Y+ + YSP+SP YSP SP Y + +SPA P
Sbjct: 798 GPTYSPTSPKYSPTSPTYS---PTSPKGSTYSPTSPGYSPTSPTY-SLTSPAISP 848
Score = 93.2 bits (230), Expect = 1e-17
Identities = 62/154 (40%), Positives = 82/154 (53%), Gaps = 6/154 (3%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP+ +PR +P SP Y SP + + + +Y+P SP Y TSP YS
Sbjct: 700 SPSYSPS---SPRYTPQSPTYTPSSPSY--------SPSSPSYSPTSPKYTPTSP--KYS 746
Query: 257 PSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPG-TVV 424
P++P + +SP Y SP YSPT+P + P + SP SP Y PTSP Y+ G T
Sbjct: 747 PTSPKYSPTSPKYSPTSPTYSPTTP----KYSPTSPTYSPTSPVYTPTSPKYSPTGPTYS 802
Query: 425 AAANVYSPSSPAYSPFSPNYAAAS--SPAYQPPS 520
+ YSP+SP YSP SP + S SP Y P S
Sbjct: 803 PTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTS 836
[80][TOP]
>UniRef100_A6NN93 DNA-directed RNA polymerase n=1 Tax=Homo sapiens RepID=A6NN93_HUMAN
Length = 1970
Score = 106 bits (264), Expect = 1e-21
Identities = 69/181 (38%), Positives = 95/181 (52%), Gaps = 13/181 (7%)
Frame = +2
Query: 17 SFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGA 196
S+SP ++ A +PG TP +P SP SP Y+ SP + + +
Sbjct: 1592 SYSP---TSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNYSP-TSPSYSPTS 1647
Query: 197 GAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARG---GPAAGY 358
+Y+P SP+Y TSP YSP++P+ + +SP YSP YSPTSPS P +
Sbjct: 1648 PSYSPTSPSYSPTSPS--YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1705
Query: 359 ASPQSPGYVPTSPAYARPGTVVAAANV-YSPSSPAYSPFSPNYAAAS------SPAYQPP 517
SP SP Y PTSP+Y+ + + YSP+SP+YSP SPNY+ S SP+Y P
Sbjct: 1706 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPNYTPTSPSYSPT 1765
Query: 518 S 520
S
Sbjct: 1766 S 1766
Score = 100 bits (250), Expect = 5e-20
Identities = 64/158 (40%), Positives = 84/158 (53%), Gaps = 10/158 (6%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP +P SP SP Y+ SP + + + +Y+P SP+Y TSP YS
Sbjct: 1654 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 1700
Query: 257 PSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPG-TVV 424
P++P+ + +SP YSP YSPTSPS P + SP SP Y PTSP Y+
Sbjct: 1701 PTSPSYSPTSPSYSPTSPSYSPTSPSYS----PTSPSYSPTSPSYSPTSPNYSPTSPNYT 1756
Query: 425 AAANVYSPSSPAYSPFSPNYAAAS------SPAYQPPS 520
+ YSP+SP+YSP SPNY S SP+Y P S
Sbjct: 1757 PTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTS 1794
Score = 99.4 bits (246), Expect = 1e-19
Identities = 74/182 (40%), Positives = 97/182 (53%), Gaps = 18/182 (9%)
Frame = +2
Query: 29 IMSSADAAGRATPGRMTPGR--SPAGRFTPRMSP----ASPGYAAMSPRFGGGLGGGPAG 190
I ++ G A P M G SP G +P M+P A+P Y A SP G G+ G AG
Sbjct: 1486 IPTNIPGLGAAGPTGMFFGSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGSGMTPGAAG 1545
Query: 191 -------GAGAYAPA-SPAYMATSPGMGYSPSTPALAVSSPG--YSPGYSPTSPSVGARG 340
A ++P SPA+ T PG SP + + SPG SP YSPTSP+ R
Sbjct: 1546 FSPSAASDASGFSPGYSPAWSPT-PGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPR- 1603
Query: 341 GPAAGYASPQSPGYVPTSPAYA--RPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQP 514
+ G +PQSP Y PTSP+Y+ P + N YSP+SP+YSP SP+Y + +SP+Y P
Sbjct: 1604 --SPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPN-YSPTSPSYSPTSPSY-SPTSPSYSP 1659
Query: 515 PS 520
S
Sbjct: 1660 TS 1661
Score = 98.6 bits (244), Expect = 2e-19
Identities = 63/161 (39%), Positives = 85/161 (52%), Gaps = 13/161 (8%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP +P SP SP Y+ SP + + + +Y+P SP+Y TSP YS
Sbjct: 1703 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPN--YS 1749
Query: 257 PSTPALAVSSPGYSP---GYSPTSPS---VGARGGPAAGYASPQSPGYVPTSPAYARPGT 418
P++P +SP YSP YSPTSP+ P + SP SP Y PTSP+Y+
Sbjct: 1750 PTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSYSPTSPSYSPSSP 1809
Query: 419 -VVAAANVYSPSSPAYSPFSPNYAAAS------SPAYQPPS 520
+ Y+PSSP+YSP SP+Y+ AS SP+Y P S
Sbjct: 1810 RYTPQSPTYTPSSPSYSPSSPSYSPASPKYTPTSPSYSPSS 1850
Score = 98.2 bits (243), Expect = 3e-19
Identities = 63/152 (41%), Positives = 82/152 (53%), Gaps = 4/152 (2%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP+ +PR +P SP Y SP + + + +Y+PASP Y TSP YS
Sbjct: 1801 SPSYSPS---SPRYTPQSPTYTPSSPSY--------SPSSPSYSPASPKYTPTSP--SYS 1847
Query: 257 PSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVA 427
PS+P +SP Y SP YSPTSP + P + SP +P Y PTSP Y+ V
Sbjct: 1848 PSSPEYTPTSPKYSPTSPKYSPTSP----KYSPTSPTYSPTTPKYSPTSPTYSPTSPVYT 1903
Query: 428 AAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
+ YSP+SP YSP SP Y + +SP Y P S
Sbjct: 1904 PTSPKYSPTSPTYSPTSPKY-SPTSPTYSPTS 1934
Score = 94.0 bits (232), Expect = 6e-18
Identities = 67/181 (37%), Positives = 94/181 (51%), Gaps = 13/181 (7%)
Frame = +2
Query: 17 SFSPIMSS-ADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGG 193
S+SP S + ++ R TP +P +P+ +P SP+SP Y+ SP++
Sbjct: 1796 SYSPTSPSYSPSSPRYTP--QSPTYTPS---SPSYSPSSPSYSPASPKY--------TPT 1842
Query: 194 AGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYAS 364
+ +Y+P+SP Y TSP YSP++P + +SP Y SP YSPT+P + P + S
Sbjct: 1843 SPSYSPSSPEYTPTSP--KYSPTSPKYSPTSPKYSPTSPTYSPTTP----KYSPTSPTYS 1896
Query: 365 PQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAAS---------SPAYQPP 517
P SP Y PTSP Y+ + YSP+SP YSP SP Y+ S SP Y P
Sbjct: 1897 PTSPVYTPTSPKYS------PTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPT 1950
Query: 518 S 520
S
Sbjct: 1951 S 1951
Score = 92.4 bits (228), Expect = 2e-17
Identities = 66/173 (38%), Positives = 90/173 (52%), Gaps = 4/173 (2%)
Frame = +2
Query: 8 ATASFSPIMSS-ADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGP 184
++ S+SP S + A+ + TP +P SP+ +P +P SP Y+ SP+
Sbjct: 1821 SSPSYSPSSPSYSPASPKYTP--TSPSYSPS---SPEYTPTSPKYSPTSPK--------- 1866
Query: 185 AGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSPG---YSPTSPSVGARGGPAAG 355
Y+P SP Y TSP YSP+TP + +SP YSP Y+PTSP + P +
Sbjct: 1867 ------YSPTSPKYSPTSPT--YSPTTPKYSPTSPTYSPTSPVYTPTSP----KYSPTSP 1914
Query: 356 YASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQP 514
SP SP Y PTSP Y+ + YSP+SP YSP SP Y + +SPA P
Sbjct: 1915 TYSPTSPKYSPTSPTYS---PTSPKGSTYSPTSPGYSPTSPTY-SLTSPAISP 1963
[81][TOP]
>UniRef100_P08775 DNA-directed RNA polymerase II subunit RPB1 n=1 Tax=Mus musculus
RepID=RPB1_MOUSE
Length = 1970
Score = 106 bits (264), Expect = 1e-21
Identities = 69/181 (38%), Positives = 95/181 (52%), Gaps = 13/181 (7%)
Frame = +2
Query: 17 SFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGA 196
S+SP ++ A +PG TP +P SP SP Y+ SP + + +
Sbjct: 1592 SYSP---TSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNYSP-TSPSYSPTS 1647
Query: 197 GAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARG---GPAAGY 358
+Y+P SP+Y TSP YSP++P+ + +SP YSP YSPTSPS P +
Sbjct: 1648 PSYSPTSPSYSPTSPS--YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1705
Query: 359 ASPQSPGYVPTSPAYARPGTVVAAANV-YSPSSPAYSPFSPNYAAAS------SPAYQPP 517
SP SP Y PTSP+Y+ + + YSP+SP+YSP SPNY+ S SP+Y P
Sbjct: 1706 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPNYTPTSPSYSPT 1765
Query: 518 S 520
S
Sbjct: 1766 S 1766
Score = 100 bits (250), Expect = 5e-20
Identities = 64/158 (40%), Positives = 84/158 (53%), Gaps = 10/158 (6%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP +P SP SP Y+ SP + + + +Y+P SP+Y TSP YS
Sbjct: 1654 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 1700
Query: 257 PSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPG-TVV 424
P++P+ + +SP YSP YSPTSPS P + SP SP Y PTSP Y+
Sbjct: 1701 PTSPSYSPTSPSYSPTSPSYSPTSPSYS----PTSPSYSPTSPSYSPTSPNYSPTSPNYT 1756
Query: 425 AAANVYSPSSPAYSPFSPNYAAAS------SPAYQPPS 520
+ YSP+SP+YSP SPNY S SP+Y P S
Sbjct: 1757 PTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTS 1794
Score = 99.4 bits (246), Expect = 1e-19
Identities = 74/182 (40%), Positives = 97/182 (53%), Gaps = 18/182 (9%)
Frame = +2
Query: 29 IMSSADAAGRATPGRMTPGR--SPAGRFTPRMSP----ASPGYAAMSPRFGGGLGGGPAG 190
I ++ G A P M G SP G +P M+P A+P Y A SP G G+ G AG
Sbjct: 1486 IPTNIPGLGAAGPTGMFFGSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGSGMTPGAAG 1545
Query: 191 -------GAGAYAPA-SPAYMATSPGMGYSPSTPALAVSSPG--YSPGYSPTSPSVGARG 340
A ++P SPA+ T PG SP + + SPG SP YSPTSP+ R
Sbjct: 1546 FSPSAASDASGFSPGYSPAWSPT-PGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPR- 1603
Query: 341 GPAAGYASPQSPGYVPTSPAYA--RPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQP 514
+ G +PQSP Y PTSP+Y+ P + N YSP+SP+YSP SP+Y + +SP+Y P
Sbjct: 1604 --SPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPN-YSPTSPSYSPTSPSY-SPTSPSYSP 1659
Query: 515 PS 520
S
Sbjct: 1660 TS 1661
Score = 99.4 bits (246), Expect = 1e-19
Identities = 63/152 (41%), Positives = 83/152 (54%), Gaps = 4/152 (2%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP +P SP SP Y+ SP + + + Y+P SP Y TSP YS
Sbjct: 1717 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPNYSPTSPNYTPTSPS--YS 1763
Query: 257 PSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYA-RPGTVV 424
P++P+ + +SP Y SP YSPTSPS P + SP SP Y P+SP Y + T
Sbjct: 1764 PTSPSYSPTSPNYTPTSPNYSPTSPSYS----PTSPSYSPTSPSYSPSSPRYTPQSPTYT 1819
Query: 425 AAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
++ YSPSSP+YSP SP Y +SP+Y P S
Sbjct: 1820 PSSPSYSPSSPSYSPTSPKY-TPTSPSYSPSS 1850
Score = 96.7 bits (239), Expect = 9e-19
Identities = 62/152 (40%), Positives = 81/152 (53%), Gaps = 4/152 (2%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP+ +PR +P SP Y SP + + + +Y+P SP Y TSP YS
Sbjct: 1801 SPSYSPS---SPRYTPQSPTYTPSSPSY--------SPSSPSYSPTSPKYTPTSP--SYS 1847
Query: 257 PSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVA 427
PS+P +SP Y SP YSPTSP + P + SP +P Y PTSP Y+ V
Sbjct: 1848 PSSPEYTPASPKYSPTSPKYSPTSP----KYSPTSPTYSPTTPKYSPTSPTYSPTSPVYT 1903
Query: 428 AAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
+ YSP+SP YSP SP Y + +SP Y P S
Sbjct: 1904 PTSPKYSPTSPTYSPTSPKY-SPTSPTYSPTS 1934
Score = 93.6 bits (231), Expect = 8e-18
Identities = 63/167 (37%), Positives = 82/167 (49%), Gaps = 3/167 (1%)
Frame = +2
Query: 23 SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
SP S + + T + TP +P +PASP Y+ SP+
Sbjct: 1822 SPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPASPKYSPTSPK--------------- 1866
Query: 203 YAPASPAYMATSPGMGYSPSTPALAVSSPGYSPG---YSPTSPSVGARGGPAAGYASPQS 373
Y+P SP Y TSP YSP+TP + +SP YSP Y+PTSP + P + SP S
Sbjct: 1867 YSPTSPKYSPTSPT--YSPTTPKYSPTSPTYSPTSPVYTPTSP----KYSPTSPTYSPTS 1920
Query: 374 PGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQP 514
P Y PTSP Y+ + YSP+SP YSP SP Y + +SPA P
Sbjct: 1921 PKYSPTSPTYS---PTSPKGSTYSPTSPGYSPTSPTY-SLTSPAISP 1963
[82][TOP]
>UniRef100_P24928 DNA-directed RNA polymerase II subunit RPB1 n=2 Tax=Euarchontoglires
RepID=RPB1_HUMAN
Length = 1970
Score = 106 bits (264), Expect = 1e-21
Identities = 69/181 (38%), Positives = 95/181 (52%), Gaps = 13/181 (7%)
Frame = +2
Query: 17 SFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGA 196
S+SP ++ A +PG TP +P SP SP Y+ SP + + +
Sbjct: 1592 SYSP---TSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNYSP-TSPSYSPTS 1647
Query: 197 GAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARG---GPAAGY 358
+Y+P SP+Y TSP YSP++P+ + +SP YSP YSPTSPS P +
Sbjct: 1648 PSYSPTSPSYSPTSPS--YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1705
Query: 359 ASPQSPGYVPTSPAYARPGTVVAAANV-YSPSSPAYSPFSPNYAAAS------SPAYQPP 517
SP SP Y PTSP+Y+ + + YSP+SP+YSP SPNY+ S SP+Y P
Sbjct: 1706 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPNYTPTSPSYSPT 1765
Query: 518 S 520
S
Sbjct: 1766 S 1766
Score = 100 bits (250), Expect = 5e-20
Identities = 64/158 (40%), Positives = 84/158 (53%), Gaps = 10/158 (6%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP +P SP SP Y+ SP + + + +Y+P SP+Y TSP YS
Sbjct: 1654 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 1700
Query: 257 PSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPG-TVV 424
P++P+ + +SP YSP YSPTSPS P + SP SP Y PTSP Y+
Sbjct: 1701 PTSPSYSPTSPSYSPTSPSYSPTSPSYS----PTSPSYSPTSPSYSPTSPNYSPTSPNYT 1756
Query: 425 AAANVYSPSSPAYSPFSPNYAAAS------SPAYQPPS 520
+ YSP+SP+YSP SPNY S SP+Y P S
Sbjct: 1757 PTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTS 1794
Score = 99.4 bits (246), Expect = 1e-19
Identities = 74/182 (40%), Positives = 97/182 (53%), Gaps = 18/182 (9%)
Frame = +2
Query: 29 IMSSADAAGRATPGRMTPGR--SPAGRFTPRMSP----ASPGYAAMSPRFGGGLGGGPAG 190
I ++ G A P M G SP G +P M+P A+P Y A SP G G+ G AG
Sbjct: 1486 IPTNIPGLGAAGPTGMFFGSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGSGMTPGAAG 1545
Query: 191 -------GAGAYAPA-SPAYMATSPGMGYSPSTPALAVSSPG--YSPGYSPTSPSVGARG 340
A ++P SPA+ T PG SP + + SPG SP YSPTSP+ R
Sbjct: 1546 FSPSAASDASGFSPGYSPAWSPT-PGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPR- 1603
Query: 341 GPAAGYASPQSPGYVPTSPAYA--RPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQP 514
+ G +PQSP Y PTSP+Y+ P + N YSP+SP+YSP SP+Y + +SP+Y P
Sbjct: 1604 --SPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPN-YSPTSPSYSPTSPSY-SPTSPSYSP 1659
Query: 515 PS 520
S
Sbjct: 1660 TS 1661
Score = 99.4 bits (246), Expect = 1e-19
Identities = 63/152 (41%), Positives = 83/152 (54%), Gaps = 4/152 (2%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP +P SP SP Y+ SP + + + Y+P SP Y TSP YS
Sbjct: 1717 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPNYSPTSPNYTPTSPS--YS 1763
Query: 257 PSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYA-RPGTVV 424
P++P+ + +SP Y SP YSPTSPS P + SP SP Y P+SP Y + T
Sbjct: 1764 PTSPSYSPTSPNYTPTSPNYSPTSPSYS----PTSPSYSPTSPSYSPSSPRYTPQSPTYT 1819
Query: 425 AAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
++ YSPSSP+YSP SP Y +SP+Y P S
Sbjct: 1820 PSSPSYSPSSPSYSPTSPKY-TPTSPSYSPSS 1850
Score = 96.7 bits (239), Expect = 9e-19
Identities = 62/152 (40%), Positives = 81/152 (53%), Gaps = 4/152 (2%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP+ +PR +P SP Y SP + + + +Y+P SP Y TSP YS
Sbjct: 1801 SPSYSPS---SPRYTPQSPTYTPSSPSY--------SPSSPSYSPTSPKYTPTSP--SYS 1847
Query: 257 PSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVA 427
PS+P +SP Y SP YSPTSP + P + SP +P Y PTSP Y+ V
Sbjct: 1848 PSSPEYTPTSPKYSPTSPKYSPTSP----KYSPTSPTYSPTTPKYSPTSPTYSPTSPVYT 1903
Query: 428 AAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
+ YSP+SP YSP SP Y + +SP Y P S
Sbjct: 1904 PTSPKYSPTSPTYSPTSPKY-SPTSPTYSPTS 1934
Score = 94.0 bits (232), Expect = 6e-18
Identities = 67/181 (37%), Positives = 94/181 (51%), Gaps = 13/181 (7%)
Frame = +2
Query: 17 SFSPIMSS-ADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGG 193
S+SP S + ++ R TP +P +P+ +P SP+SP Y+ SP++
Sbjct: 1796 SYSPTSPSYSPSSPRYTP--QSPTYTPS---SPSYSPSSPSYSPTSPKY--------TPT 1842
Query: 194 AGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYAS 364
+ +Y+P+SP Y TSP YSP++P + +SP Y SP YSPT+P + P + S
Sbjct: 1843 SPSYSPSSPEYTPTSP--KYSPTSPKYSPTSPKYSPTSPTYSPTTP----KYSPTSPTYS 1896
Query: 365 PQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAAS---------SPAYQPP 517
P SP Y PTSP Y+ + YSP+SP YSP SP Y+ S SP Y P
Sbjct: 1897 PTSPVYTPTSPKYS------PTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPT 1950
Query: 518 S 520
S
Sbjct: 1951 S 1951
Score = 92.0 bits (227), Expect = 2e-17
Identities = 62/167 (37%), Positives = 81/167 (48%), Gaps = 3/167 (1%)
Frame = +2
Query: 23 SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
SP S + + T + TP +P +P SP Y+ SP+
Sbjct: 1822 SPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYSPTSPK--------------- 1866
Query: 203 YAPASPAYMATSPGMGYSPSTPALAVSSPGYSPG---YSPTSPSVGARGGPAAGYASPQS 373
Y+P SP Y TSP YSP+TP + +SP YSP Y+PTSP + P + SP S
Sbjct: 1867 YSPTSPKYSPTSPT--YSPTTPKYSPTSPTYSPTSPVYTPTSP----KYSPTSPTYSPTS 1920
Query: 374 PGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQP 514
P Y PTSP Y+ + YSP+SP YSP SP Y + +SPA P
Sbjct: 1921 PKYSPTSPTYS---PTSPKGSTYSPTSPGYSPTSPTY-SLTSPAISP 1963
[83][TOP]
>UniRef100_P11414 DNA-directed RNA polymerase II subunit RPB1 (Fragment) n=1
Tax=Cricetulus griseus RepID=RPB1_CRIGR
Length = 467
Score = 106 bits (264), Expect = 1e-21
Identities = 69/181 (38%), Positives = 95/181 (52%), Gaps = 13/181 (7%)
Frame = +2
Query: 17 SFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGA 196
S+SP ++ A +PG TP +P SP SP Y+ SP + + +
Sbjct: 89 SYSP---TSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNYSP-TSPSYSPTS 144
Query: 197 GAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARG---GPAAGY 358
+Y+P SP+Y TSP YSP++P+ + +SP YSP YSPTSPS P +
Sbjct: 145 PSYSPTSPSYSPTSPS--YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 202
Query: 359 ASPQSPGYVPTSPAYARPGTVVAAANV-YSPSSPAYSPFSPNYAAAS------SPAYQPP 517
SP SP Y PTSP+Y+ + + YSP+SP+YSP SPNY+ S SP+Y P
Sbjct: 203 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPNYTPTSPSYSPT 262
Query: 518 S 520
S
Sbjct: 263 S 263
Score = 100 bits (250), Expect = 5e-20
Identities = 64/158 (40%), Positives = 84/158 (53%), Gaps = 10/158 (6%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP +P SP SP Y+ SP + + + +Y+P SP+Y TSP YS
Sbjct: 151 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 197
Query: 257 PSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPG-TVV 424
P++P+ + +SP YSP YSPTSPS P + SP SP Y PTSP Y+
Sbjct: 198 PTSPSYSPTSPSYSPTSPSYSPTSPSYS----PTSPSYSPTSPSYSPTSPNYSPTSPNYT 253
Query: 425 AAANVYSPSSPAYSPFSPNYAAAS------SPAYQPPS 520
+ YSP+SP+YSP SPNY S SP+Y P S
Sbjct: 254 PTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTS 291
Score = 99.4 bits (246), Expect = 1e-19
Identities = 63/152 (41%), Positives = 83/152 (54%), Gaps = 4/152 (2%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP +P SP SP Y+ SP + + + Y+P SP Y TSP YS
Sbjct: 214 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPNYSPTSPNYTPTSPS--YS 260
Query: 257 PSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYA-RPGTVV 424
P++P+ + +SP Y SP YSPTSPS P + SP SP Y P+SP Y + T
Sbjct: 261 PTSPSYSPTSPNYTPTSPNYSPTSPSYS----PTSPSYSPTSPSYSPSSPRYTPQSPTYT 316
Query: 425 AAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
++ YSPSSP+YSP SP Y +SP+Y P S
Sbjct: 317 PSSPSYSPSSPSYSPTSPKY-TPTSPSYSPSS 347
Score = 96.7 bits (239), Expect = 9e-19
Identities = 71/171 (41%), Positives = 95/171 (55%), Gaps = 2/171 (1%)
Frame = +2
Query: 14 ASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAA-MSPRFGGGLGGGPAG 190
A FSP +S DA+G +PG SPA TP SP SPG ++ P GG +
Sbjct: 41 AGFSPSAAS-DASG------FSPGYSPAWSPTPG-SPGSPGPSSPYIPSPGGAM------ 86
Query: 191 GAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSPGYSPTSPSVGARGGPAAGYASPQ 370
+ +Y+P SPAY SPG GY+P +P+ + +SP YSP TSPS SP
Sbjct: 87 -SPSYSPTSPAYEPRSPG-GYTPQSPSYSPTSPSYSP----TSPSY-----------SPT 129
Query: 371 SPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
SP Y PTSP+Y+ + + YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 130 SPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 179
Score = 96.7 bits (239), Expect = 9e-19
Identities = 62/152 (40%), Positives = 81/152 (53%), Gaps = 4/152 (2%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP+ +PR +P SP Y SP + + + +Y+P SP Y TSP YS
Sbjct: 298 SPSYSPS---SPRYTPQSPTYTPSSPSY--------SPSSPSYSPTSPKYTPTSP--SYS 344
Query: 257 PSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVA 427
PS+P +SP Y SP YSPTSP + P + SP +P Y PTSP Y+ V
Sbjct: 345 PSSPEYTPTSPKYSPTSPKYSPTSP----KYSPTSPTYSPTTPKYSPTSPTYSPTSPVYT 400
Query: 428 AAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
+ YSP+SP YSP SP Y + +SP Y P S
Sbjct: 401 PTSPKYSPTSPTYSPTSPKY-SPTSPTYSPTS 431
Score = 94.0 bits (232), Expect = 6e-18
Identities = 67/181 (37%), Positives = 94/181 (51%), Gaps = 13/181 (7%)
Frame = +2
Query: 17 SFSPIMSS-ADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGG 193
S+SP S + ++ R TP +P +P+ +P SP+SP Y+ SP++
Sbjct: 293 SYSPTSPSYSPSSPRYTP--QSPTYTPS---SPSYSPSSPSYSPTSPKY--------TPT 339
Query: 194 AGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYAS 364
+ +Y+P+SP Y TSP YSP++P + +SP Y SP YSPT+P + P + S
Sbjct: 340 SPSYSPSSPEYTPTSP--KYSPTSPKYSPTSPKYSPTSPTYSPTTP----KYSPTSPTYS 393
Query: 365 PQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAAS---------SPAYQPP 517
P SP Y PTSP Y+ + YSP+SP YSP SP Y+ S SP Y P
Sbjct: 394 PTSPVYTPTSPKYS------PTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPT 447
Query: 518 S 520
S
Sbjct: 448 S 448
Score = 92.0 bits (227), Expect = 2e-17
Identities = 62/167 (37%), Positives = 81/167 (48%), Gaps = 3/167 (1%)
Frame = +2
Query: 23 SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
SP S + + T + TP +P +P SP Y+ SP+
Sbjct: 319 SPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYSPTSPK--------------- 363
Query: 203 YAPASPAYMATSPGMGYSPSTPALAVSSPGYSPG---YSPTSPSVGARGGPAAGYASPQS 373
Y+P SP Y TSP YSP+TP + +SP YSP Y+PTSP + P + SP S
Sbjct: 364 YSPTSPKYSPTSPT--YSPTTPKYSPTSPTYSPTSPVYTPTSP----KYSPTSPTYSPTS 417
Query: 374 PGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQP 514
P Y PTSP Y+ + YSP+SP YSP SP Y + +SPA P
Sbjct: 418 PKYSPTSPTYS---PTSPKGSTYSPTSPGYSPTSPTY-SLTSPAISP 460
Score = 73.6 bits (179), Expect = 8e-12
Identities = 49/111 (44%), Positives = 63/111 (56%), Gaps = 16/111 (14%)
Frame = +2
Query: 236 SPGM-GYSPSTPALAVSSPGYSPGYSPT-SPSVGARG--GPAAGY----ASPQSPGYVPT 391
+PG G+SPS A + G+SPGYSP SP+ G+ G GP++ Y SP Y PT
Sbjct: 37 TPGAAGFSPSA---ASDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPT 93
Query: 392 SPAY--ARPGTVVAAANVYSPSSPAYSPFSPNYAAAS------SPAYQPPS 520
SPAY PG + YSP+SP+YSP SP+Y+ S SP+Y P S
Sbjct: 94 SPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTS 144
Score = 70.1 bits (170), Expect = 9e-11
Identities = 55/140 (39%), Positives = 72/140 (51%), Gaps = 17/140 (12%)
Frame = +2
Query: 152 PRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPS---TPALAVSSPGYSP------- 301
P G G GA ++P S A A+ GYSP+ TP + SPG S
Sbjct: 26 PGLGAAGRSGMTPGAAGFSP-SAASDASGFSPGYSPAWSPTPG-SPGSPGPSSPYIPSPG 83
Query: 302 -----GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYA--RPGTVVAAANVYSPSSPA 460
YSPTSP+ R + G +PQSP Y PTSP+Y+ P + N YSP+SP+
Sbjct: 84 GAMSPSYSPTSPAYEPR---SPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPN-YSPTSPS 139
Query: 461 YSPFSPNYAAASSPAYQPPS 520
YSP SP+Y + +SP+Y P S
Sbjct: 140 YSPTSPSY-SPTSPSYSPTS 158
[84][TOP]
>UniRef100_UPI00005A0B26 PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide
A isoform 17 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B26
Length = 1684
Score = 105 bits (263), Expect = 1e-21
Identities = 65/166 (39%), Positives = 92/166 (55%), Gaps = 4/166 (2%)
Frame = +2
Query: 35 SSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPA 214
S++ A +PG TP +P SP SP Y+ SP + + + +Y+P
Sbjct: 1490 STSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNY--------SPTSPSYSPT 1541
Query: 215 SPAYMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYASPQSPGYV 385
SP+Y TSP YSP++P+ + +SP Y SP YSPTSPS P + SP SP Y
Sbjct: 1542 SPSYSPTSP--SYSPTSPSYSPTSPSYSPTSPSYSPTSPSY----SPTSPSYSPTSPSYS 1595
Query: 386 PTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
PTSP+Y+ + + YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1596 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 1640
Score = 101 bits (251), Expect = 4e-20
Identities = 65/153 (42%), Positives = 85/153 (55%), Gaps = 5/153 (3%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP +P SP SP Y+ SP + + + +Y+P SP+Y TSP YS
Sbjct: 1549 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 1595
Query: 257 PSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYA--RPGTV 421
P++P+ + +SP YSP YSPTSPS P + SP SP Y PTSP Y+ RP
Sbjct: 1596 PTSPSYSPTSPSYSPTSPSYSPTSPSYS----PTSPSYSPTSPSYSPTSPNYSPSRPNYT 1651
Query: 422 VAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
+ + YSP+SP+YSP SPNY SP Y P S
Sbjct: 1652 PTSPS-YSPTSPSYSPTSPNY-TPMSPNYSPTS 1682
Score = 97.4 bits (241), Expect = 5e-19
Identities = 63/151 (41%), Positives = 82/151 (54%), Gaps = 4/151 (2%)
Frame = +2
Query: 80 PGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSP 259
PG AGR SP Y SP GG + +Y+P SP+Y TSP YSP
Sbjct: 1481 PGLGAAGR-----ESTSPAYEPRSP-------GGYTPQSPSYSPTSPSYSPTSP--SYSP 1526
Query: 260 STPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVAA 430
++P + +SP Y SP YSPTSPS P + SP SP Y PTSP+Y+ +
Sbjct: 1527 TSPNYSPTSPSYSPTSPSYSPTSPSY----SPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1582
Query: 431 AN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
+ YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1583 TSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 1612
Score = 90.1 bits (222), Expect = 8e-17
Identities = 57/140 (40%), Positives = 76/140 (54%), Gaps = 5/140 (3%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP +P SP SP Y+ SP + + + +Y+P SP+Y TSP YS
Sbjct: 1563 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 1609
Query: 257 PSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYA--RPGTV 421
P++P+ + +SP YSP YSPTSPS P + SP P Y PTSP+Y+ P
Sbjct: 1610 PTSPSYSPTSPSYSPTSPSYSPTSPSYS----PTSPNYSPSRPNYTPTSPSYSPTSPSYS 1665
Query: 422 VAAANVYSPSSPAYSPFSPN 481
+ N Y+P SP YSP SPN
Sbjct: 1666 PTSPN-YTPMSPNYSPTSPN 1684
[85][TOP]
>UniRef100_UPI00005A0B25 PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide
A isoform 16 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B25
Length = 1752
Score = 105 bits (263), Expect = 1e-21
Identities = 65/166 (39%), Positives = 92/166 (55%), Gaps = 4/166 (2%)
Frame = +2
Query: 35 SSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPA 214
S++ A +PG TP +P SP SP Y+ SP + + + +Y+P
Sbjct: 1490 STSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNY--------SPTSPSYSPT 1541
Query: 215 SPAYMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYASPQSPGYV 385
SP+Y TSP YSP++P+ + +SP Y SP YSPTSPS P + SP SP Y
Sbjct: 1542 SPSYSPTSP--SYSPTSPSYSPTSPSYSPTSPSYSPTSPSY----SPTSPSYSPTSPSYS 1595
Query: 386 PTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
PTSP+Y+ + + YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1596 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 1640
Score = 104 bits (260), Expect = 3e-21
Identities = 66/154 (42%), Positives = 88/154 (57%), Gaps = 6/154 (3%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP +P SP SP Y+ SP + + + +Y+P SP+Y TSP YS
Sbjct: 1549 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 1595
Query: 257 PSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYA--RPGTV 421
P++P+ + +SP YSP YSPTSPS P + SP SP Y PTSP Y+ RP
Sbjct: 1596 PTSPSYSPTSPSYSPTSPSYSPTSPSYS----PTSPSYSPTSPSYSPTSPNYSPSRPNYT 1651
Query: 422 VAAANVYSPSSPAYSPFSPNYA-AASSPAYQPPS 520
+ + YSP+SP+YSP SPNY + SSP+Y P S
Sbjct: 1652 PTSPS-YSPTSPSYSPTSPNYTYSPSSPSYSPTS 1684
Score = 97.4 bits (241), Expect = 5e-19
Identities = 63/151 (41%), Positives = 82/151 (54%), Gaps = 4/151 (2%)
Frame = +2
Query: 80 PGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSP 259
PG AGR SP Y SP GG + +Y+P SP+Y TSP YSP
Sbjct: 1481 PGLGAAGR-----ESTSPAYEPRSP-------GGYTPQSPSYSPTSPSYSPTSP--SYSP 1526
Query: 260 STPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVAA 430
++P + +SP Y SP YSPTSPS P + SP SP Y PTSP+Y+ +
Sbjct: 1527 TSPNYSPTSPSYSPTSPSYSPTSPSY----SPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1582
Query: 431 AN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
+ YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1583 TSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 1612
Score = 91.3 bits (225), Expect = 4e-17
Identities = 58/146 (39%), Positives = 76/146 (52%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP +P SP SP Y+ SP + +Y+P SP+Y TSP YS
Sbjct: 1619 SPSYSPT---SPSYSPTSPSYSPTSPNYSPSRPNYTPTSP-SYSPTSPSYSPTSPNYTYS 1674
Query: 257 PSTPALAVSSPGYSPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVAAAN 436
PS+P+ + +SP +P YSPTSP+ SP SP Y PTSP Y+ +
Sbjct: 1675 PSSPSYSPTSP--NPKYSPTSPN---------PTYSPTSPKYSPTSPTYS---PTSPKGS 1720
Query: 437 VYSPSSPAYSPFSPNYAAASSPAYQP 514
YSP+SP YSP SP Y + +SPA P
Sbjct: 1721 TYSPTSPGYSPTSPTY-SLTSPAISP 1745
[86][TOP]
>UniRef100_UPI00005A0B23 PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide
A isoform 14 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B23
Length = 1653
Score = 105 bits (263), Expect = 1e-21
Identities = 67/172 (38%), Positives = 95/172 (55%), Gaps = 4/172 (2%)
Frame = +2
Query: 17 SFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGA 196
S+SP ++ A +PG TP +P SP SP Y+ SP + + +
Sbjct: 1456 SYSP---TSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNY--------SPTS 1504
Query: 197 GAYAPASPAYMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYASP 367
+Y+P SP+Y TSP YSP++P+ + +SP Y SP YSPTSPS P + SP
Sbjct: 1505 PSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSYSPTSPSYSPTSPSY----SPTSPSYSP 1558
Query: 368 QSPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
SP Y PTSP+Y+ + + YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1559 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 1609
Score = 102 bits (255), Expect = 1e-20
Identities = 62/145 (42%), Positives = 82/145 (56%), Gaps = 4/145 (2%)
Frame = +2
Query: 98 GRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALA 277
G +P SP SP Y SP GG + +Y+P SP+Y TSP YSP++P +
Sbjct: 1451 GAMSPSYSPTSPAYEPRSP-------GGYTPQSPSYSPTSPSYSPTSP--SYSPTSPNYS 1501
Query: 278 VSSPGY---SPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVAAAN-VYS 445
+SP Y SP YSPTSPS P + SP SP Y PTSP+Y+ + + YS
Sbjct: 1502 PTSPSYSPTSPSYSPTSPSY----SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1557
Query: 446 PSSPAYSPFSPNYAAASSPAYQPPS 520
P+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1558 PTSPSYSPTSPSY-SPTSPSYSPTS 1581
Score = 101 bits (251), Expect = 4e-20
Identities = 65/153 (42%), Positives = 85/153 (55%), Gaps = 5/153 (3%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP +P SP SP Y+ SP + + + +Y+P SP+Y TSP YS
Sbjct: 1518 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 1564
Query: 257 PSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYA--RPGTV 421
P++P+ + +SP YSP YSPTSPS P + SP SP Y PTSP Y+ RP
Sbjct: 1565 PTSPSYSPTSPSYSPTSPSYSPTSPSYS----PTSPSYSPTSPSYSPTSPNYSPSRPNYT 1620
Query: 422 VAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
+ + YSP+SP+YSP SPNY SP Y P S
Sbjct: 1621 PTSPS-YSPTSPSYSPTSPNY-TPMSPNYSPTS 1651
Score = 90.1 bits (222), Expect = 8e-17
Identities = 57/140 (40%), Positives = 76/140 (54%), Gaps = 5/140 (3%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP +P SP SP Y+ SP + + + +Y+P SP+Y TSP YS
Sbjct: 1532 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 1578
Query: 257 PSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYA--RPGTV 421
P++P+ + +SP YSP YSPTSPS P + SP P Y PTSP+Y+ P
Sbjct: 1579 PTSPSYSPTSPSYSPTSPSYSPTSPSYS----PTSPNYSPSRPNYTPTSPSYSPTSPSYS 1634
Query: 422 VAAANVYSPSSPAYSPFSPN 481
+ N Y+P SP YSP SPN
Sbjct: 1635 PTSPN-YTPMSPNYSPTSPN 1653
Score = 68.6 bits (166), Expect = 3e-10
Identities = 45/118 (38%), Positives = 60/118 (50%), Gaps = 1/118 (0%)
Frame = +2
Query: 170 LGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSPGYSPTSPSVGARGGPA 349
LG G G + A + YSP++PA SPG GY+P SPS
Sbjct: 1430 LGQLAPAGTGCFDLLLDAEKCGAMSPSYSPTSPAYEPRSPG---GYTPQSPSY------- 1479
Query: 350 AGYASPQSPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
SP SP Y PTSP+Y+ + + YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1480 ----SPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 1532
[87][TOP]
>UniRef100_C5FCL2 DNA-directed RNA polymerase n=1 Tax=Microsporum canis CBS 113480
RepID=C5FCL2_NANOT
Length = 1748
Score = 105 bits (263), Expect = 1e-21
Identities = 67/153 (43%), Positives = 85/153 (55%), Gaps = 5/153 (3%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGY- 253
T SPA + SP SPG + SPRF PA + ++AP SPAY TSPG G
Sbjct: 1573 TSPTSPAYSPSSGYSPTSPGMSITSPRFISSPAFSPA--SPSFAPTSPAYSPTSPGYGQA 1630
Query: 254 -SPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTV 421
SP++P+ + +SPG+SP YSPTSPS PA+ SP SP Y PTSPA G
Sbjct: 1631 QSPTSPSYSPTSPGFSPTSPSYSPTSPSFS----PASPVFSPTSPSYSPTSPALGGTGRH 1686
Query: 422 VAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
++ SP+SP Y+P SP ++ S AY P S
Sbjct: 1687 LSPT---SPTSPKYTPTSPGWSPTSPEAYSPTS 1716
Score = 95.5 bits (236), Expect = 2e-18
Identities = 65/189 (34%), Positives = 93/189 (49%), Gaps = 26/189 (13%)
Frame = +2
Query: 32 MSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAP 211
+SS D + +P R + G F P+ G++ PR GG G P+ +P
Sbjct: 1519 ISSPDPDSQFSPVRQAGSENAVG-FADYQPPSYGGFSPHEPRSPGG-GYSPSSPFNT-SP 1575
Query: 212 ASPAYMATSPGMGYSPSTPALAVSSPGY----------------SPGYSPTSPSVGARGG 343
SPAY SP GYSP++P ++++SP + SP YSPTSP G
Sbjct: 1576 TSPAY---SPSSGYSPTSPGMSITSPRFISSPAFSPASPSFAPTSPAYSPTSPGYGQAQS 1632
Query: 344 PAAGYASPQSPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSP---------NYAAA 493
P + SP SPG+ PTSP+Y+ + A+ V+SP+SP+YSP SP + +
Sbjct: 1633 PTSPSYSPTSPGFSPTSPSYSPTSPSFSPASPVFSPTSPSYSPTSPALGGTGRHLSPTSP 1692
Query: 494 SSPAYQPPS 520
+SP Y P S
Sbjct: 1693 TSPKYTPTS 1701
Score = 92.4 bits (228), Expect = 2e-17
Identities = 63/177 (35%), Positives = 90/177 (50%), Gaps = 15/177 (8%)
Frame = +2
Query: 11 TASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGG---GLGGG 181
T+ SP S + +PG SP +P SPASP +A SP + G G
Sbjct: 1573 TSPTSPAYSPSSGYSPTSPGMSIT--SPRFISSPAFSPASPSFAPTSPAYSPTSPGYGQA 1630
Query: 182 PAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARG---- 340
+ + +Y+P SP + TSP YSP++P+ + +SP +SP YSPTSP++G G
Sbjct: 1631 QSPTSPSYSPTSPGFSPTSPS--YSPTSPSFSPASPVFSPTSPSYSPTSPALGGTGRHLS 1688
Query: 341 --GPAAGYASPQSPGYVPTSP-AYA--RPGTVVAAANVYSPSSPAYSPFSPNYAAAS 496
P + +P SPG+ PTSP AY+ P + + P+SP YSP SP + S
Sbjct: 1689 PTSPTSPKYTPTSPGWSPTSPEAYSPTSPNFSGSPTSPGGPTSPGYSPTSPTFNPTS 1745
Score = 70.9 bits (172), Expect = 5e-11
Identities = 54/152 (35%), Positives = 74/152 (48%), Gaps = 22/152 (14%)
Frame = +2
Query: 8 ATASFSPIMSSADAAGRATPGR------MTPGRSPAGRFTPRMSPASPGYAAMSPRFGGG 169
A+ SF+P ++ A +PG +P SP +P SP SP Y+ SP F
Sbjct: 1609 ASPSFAP---TSPAYSPTSPGYGQAQSPTSPSYSPT---SPGFSPTSPSYSPTSPSFS-- 1660
Query: 170 LGGGPAGGAGAYAPASPAYMATSPGMG--------YSPSTPALAVSSPGYSP----GYSP 313
PA + ++P SP+Y TSP +G SP++P +SPG+SP YSP
Sbjct: 1661 ----PA--SPVFSPTSPSYSPTSPALGGTGRHLSPTSPTSPKYTPTSPGWSPTSPEAYSP 1714
Query: 314 TSPSVGAR----GGPAAGYASPQSPGYVPTSP 397
TSP+ GGP + SP SP + PTSP
Sbjct: 1715 TSPNFSGSPTSPGGPTSPGYSPTSPTFNPTSP 1746
[88][TOP]
>UniRef100_P36594 DNA-directed RNA polymerase II subunit rpb1 n=1
Tax=Schizosaccharomyces pombe RepID=RPB1_SCHPO
Length = 1752
Score = 105 bits (263), Expect = 1e-21
Identities = 68/177 (38%), Positives = 97/177 (54%), Gaps = 7/177 (3%)
Frame = +2
Query: 11 TASFSPIMSSADAAGRATPGRMTPGRSPAGRF---TPRMSPASPGYAAMSPRFGGGLGGG 181
T+ FS MS + +PG S + + +P SP SP Y+ SP +
Sbjct: 1540 TSPFSSAMSPGYGLTSPSYSPSSPGYSTSPAYMPSSPSYSPTSPSYSPTSPSY------- 1592
Query: 182 PAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAA 352
+ + +Y+P SP+Y ATSP YSP++P+ + +SP YSP YSPTSPS P +
Sbjct: 1593 -SPTSPSYSPTSPSYSATSPS--YSPTSPSYSPTSPSYSPTSPSYSPTSPSYS----PTS 1645
Query: 353 GYASPQSPGYVPTSPAYARPGTVVAAANV-YSPSSPAYSPFSPNYAAASSPAYQPPS 520
SP SP Y PTSP+Y+ + + YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1646 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 1701
Score = 103 bits (256), Expect = 1e-20
Identities = 66/164 (40%), Positives = 91/164 (55%), Gaps = 8/164 (4%)
Frame = +2
Query: 53 GRATPGRMTP---GRSPA-GRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASP 220
G +PG +P SP G +P SP+SPGY+ P + +Y+P SP
Sbjct: 1533 GVQSPGYTSPFSSAMSPGYGLTSPSYSPSSPGYSTSPAYMPSSPSYSPT--SPSYSPTSP 1590
Query: 221 AYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPT 391
+Y TSP YSP++P+ + +SP YSP YSPTSPS P + SP SP Y PT
Sbjct: 1591 SYSPTSPS--YSPTSPSYSATSPSYSPTSPSYSPTSPSYS----PTSPSYSPTSPSYSPT 1644
Query: 392 SPAYARPGTVVAAANV-YSPSSPAYSPFSPNYAAASSPAYQPPS 520
SP+Y+ + + YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1645 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 1687
Score = 103 bits (256), Expect = 1e-20
Identities = 63/152 (41%), Positives = 88/152 (57%), Gaps = 4/152 (2%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP +P SP SP Y+A SP + + + +Y+P SP+Y TSP YS
Sbjct: 1589 SPSYSPT---SPSYSPTSPSYSATSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 1635
Query: 257 PSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVA 427
P++P+ + +SP YSP YSPTSPS P + SP SP Y PTSP+Y+ +
Sbjct: 1636 PTSPSYSPTSPSYSPTSPSYSPTSPSYS----PTSPSYSPTSPSYSPTSPSYSPTSPSYS 1691
Query: 428 AANV-YSPSSPAYSPFSPNYAAASSPAYQPPS 520
+ YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1692 PTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 1722
Score = 103 bits (256), Expect = 1e-20
Identities = 65/170 (38%), Positives = 91/170 (53%), Gaps = 4/170 (2%)
Frame = +2
Query: 23 SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
SP S + AT +P +P SP SP Y+ SP + + + +
Sbjct: 1596 SPSYSPTSPSYSATSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY--------SPTSPS 1647
Query: 203 YAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQS 373
Y+P SP+Y TSP YSP++P+ + +SP YSP YSPTSPS P + SP S
Sbjct: 1648 YSPTSPSYSPTSPS--YSPTSPSYSPTSPSYSPTSPSYSPTSPSY----SPTSPSYSPTS 1701
Query: 374 PGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
P Y PTSP+Y+ + + YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1702 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 1750
Score = 102 bits (254), Expect = 2e-20
Identities = 71/187 (37%), Positives = 97/187 (51%), Gaps = 18/187 (9%)
Frame = +2
Query: 14 ASFSPIMSSADAA----------GRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFG 163
A+FSP++ G A+P + G G +P S SPGY SP +
Sbjct: 1503 AAFSPLVQGGSEGREGFGDYGLLGAASPYK---GVQSPGYTSPFSSAMSPGYGLTSPSYS 1559
Query: 164 G---GLGGGPA--GGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYS---PGYSPTS 319
G PA + +Y+P SP+Y TSP YSP++P+ + +SP YS P YSPTS
Sbjct: 1560 PSSPGYSTSPAYMPSSPSYSPTSPSYSPTSPS--YSPTSPSYSPTSPSYSATSPSYSPTS 1617
Query: 320 PSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASS 499
PS P + SP SP Y PTSP+Y+ + YSP+SP+YSP SP+Y + +S
Sbjct: 1618 PSYS----PTSPSYSPTSPSYSPTSPSYS------PTSPSYSPTSPSYSPTSPSY-SPTS 1666
Query: 500 PAYQPPS 520
P+Y P S
Sbjct: 1667 PSYSPTS 1673
Score = 73.6 bits (179), Expect = 8e-12
Identities = 45/111 (40%), Positives = 61/111 (54%), Gaps = 3/111 (2%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP +P SP SP Y+ SP + + + +Y+P SP+Y TSP YS
Sbjct: 1659 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 1705
Query: 257 PSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPA 400
P++P+ + +SP YSP YSPTSPS P + SP SP Y PTSP+
Sbjct: 1706 PTSPSYSPTSPSYSPTSPSYSPTSPSYS----PTSPSYSPTSPSYSPTSPS 1752
Score = 63.2 bits (152), Expect = 1e-08
Identities = 61/158 (38%), Positives = 69/158 (43%), Gaps = 9/158 (5%)
Frame = +2
Query: 74 MTPGRSPAGRFTP-RMSP-------ASPGYAAMSPRFGGGLGGGPA-GGAGAYAPASPAY 226
M + P G TP SP SP AA SP GG G G G ASP
Sbjct: 1473 MGTSQLPEGAGTPYERSPMVDSGFVGSPDAAAFSPLVQGGSEGREGFGDYGLLGAASPYK 1532
Query: 227 MATSPGMGYSPSTPALAVSSPGYSPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYA 406
SPG SP + A+ SPGY TSPS SP SPGY TSPAY
Sbjct: 1533 GVQSPGYT-SPFSSAM-------SPGYGLTSPSY-----------SPSSPGY-STSPAYM 1572
Query: 407 RPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
PSSP+YSP SP+Y + +SP+Y P S
Sbjct: 1573 -------------PSSPSYSPTSPSY-SPTSPSYSPTS 1596
[89][TOP]
>UniRef100_UPI000151A8B3 hypothetical protein PGUG_01105 n=1 Tax=Pichia guilliermondii ATCC
6260 RepID=UPI000151A8B3
Length = 1018
Score = 105 bits (262), Expect = 2e-21
Identities = 74/173 (42%), Positives = 96/173 (55%), Gaps = 6/173 (3%)
Frame = +2
Query: 14 ASFSPIMSS--ADAAGRATPGRMTPGRSPAGRFTPRMSPASP-GYAAMSPRFGGGLGGGP 184
A FSPI ++ +D AG T PG SP SP SP Y A SP +GG G
Sbjct: 763 AGFSPIHTAPVSDGAGALTAYGGQPG-SP--------SPTSPFAYGATSPAYGGA-SPGY 812
Query: 185 AGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAG 355
+ Y+P SP+Y TSP YSP++P+ + +SP YSP YSPTSPS P +
Sbjct: 813 GVTSPTYSPTSPSYSPTSPS--YSPTSPSYSPTSPSYSPTSPSYSPTSPSYS----PTSP 866
Query: 356 YASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQP 514
SP SP Y PTSP+Y+ + YSP+SP+YSP SP+Y + +SP+Y P
Sbjct: 867 SYSPTSPSYSPTSPSYS------PTSPSYSPTSPSYSPTSPSY-SPTSPSYSP 912
Score = 89.7 bits (221), Expect = 1e-16
Identities = 67/185 (36%), Positives = 87/185 (47%), Gaps = 20/185 (10%)
Frame = +2
Query: 26 PIMSSADAAGRATPGRMTPGRS-----------PAGRFTP-RMSPASPGYAAMSPRFGGG 169
P+ ++ A A G TP R F+P +P S G A++ +GG
Sbjct: 728 PVGAAEGAGAYADDGGATPYREYDMEDDKIQFEEGAGFSPIHTAPVSDGAGALTA-YGGQ 786
Query: 170 LGGGPAGGAGAYAPASPAYMATSPGMG-----YSPSTPALAVSSPGYSP---GYSPTSPS 325
G AY SPAY SPG G YSP++P+ + +SP YSP YSPTSPS
Sbjct: 787 PGSPSPTSPFAYGATSPAYGGASPGYGVTSPTYSPTSPSYSPTSPSYSPTSPSYSPTSPS 846
Query: 326 VGARGGPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPA 505
SP SP Y PTSP+Y SP+SP+YSP SP+Y + +SP+
Sbjct: 847 Y-----------SPTSPSYSPTSPSY-------------SPTSPSYSPTSPSY-SPTSPS 881
Query: 506 YQPPS 520
Y P S
Sbjct: 882 YSPTS 886
Score = 77.0 bits (188), Expect = 7e-13
Identities = 54/156 (34%), Positives = 77/156 (49%), Gaps = 5/156 (3%)
Frame = +2
Query: 35 SSADAAGRATPGR--MTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYA 208
+++ A G A+PG +P SP +P SP SP Y+ SP + + + +Y+
Sbjct: 800 ATSPAYGGASPGYGVTSPTYSPT---SPSYSPTSPSYSPTSPSYSP-TSPSYSPTSPSYS 855
Query: 209 PASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPG 379
P SP+Y TSP YSP++P+ + +SP YSP YSPTSPS SP SP
Sbjct: 856 PTSPSYSPTSPS--YSPTSPSYSPTSPSYSPTSPSYSPTSPSY-----------SPTSPS 902
Query: 380 YVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYA 487
Y PTSP+Y SP ++ PN++
Sbjct: 903 YSPTSPSY----------------SPTFAKLQPNFS 922
[90][TOP]
>UniRef100_UPI0000D5670C PREDICTED: similar to GA13798-PA n=1 Tax=Tribolium castaneum
RepID=UPI0000D5670C
Length = 2007
Score = 105 bits (262), Expect = 2e-21
Identities = 69/155 (44%), Positives = 89/155 (57%), Gaps = 5/155 (3%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP +P SP SP Y+ SPR+ + +Y+P SP+Y +SP YS
Sbjct: 1722 SPSYSPT---SPSYSPTSPSYSPSSPRY--------TPASPSYSPTSPSYSPSSP--QYS 1768
Query: 257 PSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAY--ARPGTV 421
P++P+ + SSP Y SP YSPTSPS A G P SP SP Y PTSP Y + P
Sbjct: 1769 PASPSFSPSSPKYSPTSPSYSPTSPSF-AGGSP---QYSPTSPSYSPTSPNYSPSSPQHT 1824
Query: 422 VAAANVYSPSSPAYSPFSPNYAAASSPAYQPPSRR 526
AA++ YSPSSP YSP SP+Y + +SP Y P S +
Sbjct: 1825 PAASSRYSPSSPNYSPSSPSY-SPTSPQYSPHSTK 1858
Score = 105 bits (261), Expect = 3e-21
Identities = 67/174 (38%), Positives = 93/174 (53%), Gaps = 6/174 (3%)
Frame = +2
Query: 23 SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
SP S + + + T MTP +P SP SP Y+ SP + + + +
Sbjct: 1582 SPSYSPSSPSFQPTSPSMTPVSPGYSPTSPGYSPTSPNYSPTSPSYSP-TSPSYSPTSPS 1640
Query: 203 YAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARG---GPAAGYAS 364
Y+P SP+Y TSP YSP++P+ + +SP YSP YSPTSPS P + S
Sbjct: 1641 YSPTSPSYSPTSPS--YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1698
Query: 365 PQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPSRR 526
P SP Y PTSP+Y+ + YSP+SP+YSP SP+Y + +SP+Y P S R
Sbjct: 1699 PTSPSYSPTSPSYS------PTSPSYSPTSPSYSPTSPSY-SPTSPSYSPSSPR 1745
Score = 104 bits (259), Expect = 4e-21
Identities = 73/182 (40%), Positives = 97/182 (53%), Gaps = 16/182 (8%)
Frame = +2
Query: 23 SPIMSSADAAGRATPGRMTPGRSPAGRFTPRM----SPASPGYAAMSPR----FGGGLGG 178
+P + SA + MTPG PA F+P S SPGY A SP
Sbjct: 1520 TPYVGSAWSPHNLMGSGMTPG-GPA--FSPSAASDASGMSPGYGAWSPTPQSPAMSPFMA 1576
Query: 179 GPAGGAGAYAPASPAYMATSPGM-----GYSPSTPALAVSSPGYSP---GYSPTSPSVGA 334
P G + +Y+P+SP++ TSP M GYSP++P + +SP YSP YSPTSPS
Sbjct: 1577 SPHGQSPSYSPSSPSFQPTSPSMTPVSPGYSPTSPGYSPTSPNYSPTSPSYSPTSPSYS- 1635
Query: 335 RGGPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQP 514
P + SP SP Y PTSP+Y+ + YSP+SP+YSP SP+Y + +SP+Y P
Sbjct: 1636 ---PTSPSYSPTSPSYSPTSPSYS------PTSPSYSPTSPSYSPTSPSY-SPTSPSYSP 1685
Query: 515 PS 520
S
Sbjct: 1686 TS 1687
Score = 103 bits (257), Expect = 7e-21
Identities = 68/175 (38%), Positives = 95/175 (54%), Gaps = 8/175 (4%)
Frame = +2
Query: 17 SFSPIMSS-ADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGG 193
S+SP S + ++ R TP +P SP +P SP+SP Y+ SP F +
Sbjct: 1731 SYSPTSPSYSPSSPRYTPA--SPSYSPT---SPSYSPSSPQYSPASPSF--------SPS 1777
Query: 194 AGAYAPASPAYMATSPGMG-----YSPSTPALAVSSPGYSPGYSPTSPSVGARGGPAAGY 358
+ Y+P SP+Y TSP YSP++P+ + +SP YSP +P+ +R P++
Sbjct: 1778 SPKYSPTSPSYSPTSPSFAGGSPQYSPTSPSYSPTSPNYSPSSPQHTPAASSRYSPSSPN 1837
Query: 359 ASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAY--QPP 517
SP SP Y PTSP Y+ T YSP+SP Y+P SP+Y+ A SPAY QPP
Sbjct: 1838 YSPSSPSYSPTSPQYSPHST------KYSPTSPTYTPTSPSYSPA-SPAYSSQPP 1885
Score = 102 bits (254), Expect = 2e-20
Identities = 65/161 (40%), Positives = 87/161 (54%), Gaps = 7/161 (4%)
Frame = +2
Query: 59 ATPGRMTPGRSPAGRF----TPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAY 226
A+P +P SP+ +P M+P SPGY+ SP Y+P SP Y
Sbjct: 1576 ASPHGQSPSYSPSSPSFQPTSPSMTPVSPGYSPTSP---------------GYSPTSPNY 1620
Query: 227 MATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSP 397
TSP YSP++P+ + +SP YSP YSPTSPS P + SP SP Y PTSP
Sbjct: 1621 SPTSPS--YSPTSPSYSPTSPSYSPTSPSYSPTSPSYS----PTSPSYSPTSPSYSPTSP 1674
Query: 398 AYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
+Y+ + YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1675 SYS------PTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 1708
Score = 101 bits (251), Expect = 4e-20
Identities = 63/151 (41%), Positives = 84/151 (55%), Gaps = 3/151 (1%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP +P SP SP Y+ SP + + + +Y+P SP+Y TSP YS
Sbjct: 1631 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 1677
Query: 257 PSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVA 427
P++P+ + +SP YSP YSPTSPS P + SP SP Y PTSP+Y+
Sbjct: 1678 PTSPSYSPTSPSYSPTSPSYSPTSPSY----SPTSPSYSPTSPSYSPTSPSYS------P 1727
Query: 428 AANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
+ YSP+SP+YSP SP Y A SP+Y P S
Sbjct: 1728 TSPSYSPTSPSYSPSSPRYTPA-SPSYSPTS 1757
Score = 99.8 bits (247), Expect = 1e-19
Identities = 64/162 (39%), Positives = 84/162 (51%), Gaps = 14/162 (8%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP +P SP SP Y+ SP + + + +Y+P SP+Y TSP YS
Sbjct: 1687 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 1733
Query: 257 PSTPALAVSSPGY---SPGYSPTSPSVGARG---GPAAGYASPQSPGYVPTSPAYARPGT 418
P++P+ + SSP Y SP YSPTSPS PA+ SP SP Y PTSP+Y+
Sbjct: 1734 PTSPSYSPSSPRYTPASPSYSPTSPSYSPSSPQYSPASPSFSPSSPKYSPTSPSYSPTSP 1793
Query: 419 VVAAANV--------YSPSSPAYSPFSPNYAAASSPAYQPPS 520
A + YSP+SP YSP SP + A+S Y P S
Sbjct: 1794 SFAGGSPQYSPTSPSYSPTSPNYSPSSPQHTPAASSRYSPSS 1835
Score = 96.3 bits (238), Expect = 1e-18
Identities = 74/191 (38%), Positives = 98/191 (51%), Gaps = 19/191 (9%)
Frame = +2
Query: 8 ATASFSPIMSS-ADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGP 184
A+ S+SP S + ++ + +P +P SP+ +P+ SP SP Y+ SP F
Sbjct: 1749 ASPSYSPTSPSYSPSSPQYSPA--SPSFSPS---SPKYSPTSPSYSPTSPSF-------- 1795
Query: 185 AGGAGAYAPASPAYMATSPGMGYSPSTPA--------LAVSSPGYSPG---YSPTSPSVG 331
AGG+ Y+P SP+Y TSP YSPS+P + SSP YSP YSPTSP
Sbjct: 1796 AGGSPQYSPTSPSYSPTSPN--YSPSSPQHTPAASSRYSPSSPNYSPSSPSYSPTSPQYS 1853
Query: 332 ARGGPAAGYASPQSPGYVPTSPAYARPGTVVAAANV-YSPSSPAYSPFSP------NYAA 490
P + SP SP Y PTSP+Y+ ++ YSPSSP+YSP SP Y +
Sbjct: 1854 ----PHSTKYSPTSPTYTPTSPSYSPASPAYSSQPPRYSPSSPSYSPTSPITLPPSPYYS 1909
Query: 491 ASSPAYQPPSR 523
SS Y SR
Sbjct: 1910 RSSSTYTFSSR 1920
Score = 88.2 bits (217), Expect = 3e-16
Identities = 68/168 (40%), Positives = 90/168 (53%), Gaps = 10/168 (5%)
Frame = +2
Query: 47 AAGRATPGRMTPGRSPAGRFTPRMSPASPGY-AAMSPR--FGGGLG-GGPAGGAGAYAPA 214
A+G TP SP TP A+P +A SP G G+ GGPA A + A
Sbjct: 1493 ASGMFFGSAATPSMSPGAAMTPWNQGATPYVGSAWSPHNLMGSGMTPGGPAFSPSAASDA 1552
Query: 215 S---PAYMATSPGMGYSPSTPALA--VSSP-GYSPGYSPTSPSVGARGGPAAGYASPQSP 376
S P Y A SP +P +PA++ ++SP G SP YSP+SPS P + +P SP
Sbjct: 1553 SGMSPGYGAWSP----TPQSPAMSPFMASPHGQSPSYSPSSPSFQ----PTSPSMTPVSP 1604
Query: 377 GYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
GY PTSP Y+ + YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1605 GYSPTSPGYS------PTSPNYSPTSPSYSPTSPSY-SPTSPSYSPTS 1645
Score = 88.2 bits (217), Expect = 3e-16
Identities = 68/179 (37%), Positives = 90/179 (50%), Gaps = 8/179 (4%)
Frame = +2
Query: 8 ATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPA 187
AT S SP + ATP + SP M+P P ++ + G+ P
Sbjct: 1502 ATPSMSPGAAMTPWNQGATP-YVGSAWSPHNLMGSGMTPGGPAFSPSAASDASGMS--PG 1558
Query: 188 GGAGAYAPASPA---YMATSPGMG--YSPSTPALAVSSPGY---SPGYSPTSPSVGARGG 343
GA + P SPA +MA+ G YSPS+P+ +SP SPGYSPTSP
Sbjct: 1559 YGAWSPTPQSPAMSPFMASPHGQSPSYSPSSPSFQPTSPSMTPVSPGYSPTSP------- 1611
Query: 344 PAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
GY SP SP Y PTSP+Y+ + YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1612 ---GY-SPTSPNYSPTSPSYS------PTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 1659
[91][TOP]
>UniRef100_UPI00005A0B2B PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
(RPB1) isoform 22 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B2B
Length = 1892
Score = 105 bits (262), Expect = 2e-21
Identities = 68/181 (37%), Positives = 96/181 (53%), Gaps = 13/181 (7%)
Frame = +2
Query: 17 SFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGA 196
S+SP ++ A +PG TP +P SP SP Y+ SP + + +
Sbjct: 1577 SYSP---TSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNYSP-TSPSYSPTS 1632
Query: 197 GAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARG---GPAAGY 358
+Y+P SP+Y TSP YSP++P+ + +SP YSP YSPTSPS P +
Sbjct: 1633 PSYSPTSPSYSPTSPS--YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1690
Query: 359 ASPQSPGYVPTSPAYARPGTVVAAANV-YSPSSPAYSPFSPNYAAA------SSPAYQPP 517
SP SP Y PTSP+Y+ + + YSP+SP+YSP SPNY+ + +SP+Y P
Sbjct: 1691 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPSRPNYTPTSPSYSPT 1750
Query: 518 S 520
S
Sbjct: 1751 S 1751
Score = 99.4 bits (246), Expect = 1e-19
Identities = 64/159 (40%), Positives = 88/159 (55%), Gaps = 11/159 (6%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP +P SP SP Y+ SP + + + +Y+P SP+Y TSP YS
Sbjct: 1632 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 1678
Query: 257 PSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYA--RPGTV 421
P++P+ + +SP YSP YSPTSPS P + SP SP Y PTSP+Y+ P
Sbjct: 1679 PTSPSYSPTSPSYSPTSPSYSPTSPSYS----PTSPSYSPTSPSYSPTSPSYSPTSPNYS 1734
Query: 422 VAAANVYSPSSPAYSPFSPNYAAAS------SPAYQPPS 520
+ N Y+P+SP+YSP SP+Y+ S SP+Y P S
Sbjct: 1735 PSRPN-YTPTSPSYSPTSPSYSPTSPKYTPTSPSYSPSS 1772
Score = 94.0 bits (232), Expect = 6e-18
Identities = 64/178 (35%), Positives = 85/178 (47%), Gaps = 12/178 (6%)
Frame = +2
Query: 23 SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
SP S + T +P R +P SP SP Y+ SP++ + +
Sbjct: 1716 SPSYSPTSPSYSPTSPNYSPSRPNYTPTSPSYSPTSPSYSPTSPKY--------TPTSPS 1767
Query: 203 YAPASPAYMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYASPQS 373
Y+P+SP Y TSP YSP++P + +SP Y SP YSPT+P + P + SP S
Sbjct: 1768 YSPSSPEYTPTSP--KYSPTSPKYSPTSPKYSPTSPTYSPTTP----KYSPTSPTYSPTS 1821
Query: 374 PGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAAS---------SPAYQPPS 520
P Y PTSP Y+ + YSP+SP YSP SP Y+ S SP Y P S
Sbjct: 1822 PVYTPTSPKYS------PTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTS 1873
Score = 91.7 bits (226), Expect = 3e-17
Identities = 62/167 (37%), Positives = 80/167 (47%), Gaps = 3/167 (1%)
Frame = +2
Query: 23 SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
SP S + T + TP +P +P SP Y+ SP+
Sbjct: 1744 SPSYSPTSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYSPTSPK--------------- 1788
Query: 203 YAPASPAYMATSPGMGYSPSTPALAVSSPGYSPG---YSPTSPSVGARGGPAAGYASPQS 373
Y+P SP Y TSP YSP+TP + +SP YSP Y+PTSP + P + SP S
Sbjct: 1789 YSPTSPKYSPTSPT--YSPTTPKYSPTSPTYSPTSPVYTPTSP----KYSPTSPTYSPTS 1842
Query: 374 PGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQP 514
P Y PTSP Y+ + YSP+SP YSP SP Y + +SPA P
Sbjct: 1843 PKYSPTSPTYS---PTSPKGSTYSPTSPGYSPTSPTY-SLTSPAISP 1885
Score = 90.9 bits (224), Expect = 5e-17
Identities = 60/150 (40%), Positives = 78/150 (52%), Gaps = 6/150 (4%)
Frame = +2
Query: 89 SPAGRFTPRMSP----ASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
SP G +P M+P A+P Y A SP G G+ G AG ++P+ A S G+S
Sbjct: 1503 SPMGGISPAMTPWNQGATPAYGAWSPSVGSGMTPGAAG----FSPS-----AASDASGFS 1553
Query: 257 PSTPALAVSSPGYSPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARP--GTVVAA 430
P GYSP +SPT S G+ GG + SP SP Y P SP P +
Sbjct: 1554 P----------GYSPAWSPTPGSPGSPGGAMSPSYSPTSPAYEPRSPGGYTPQSPSYSPT 1603
Query: 431 ANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
+ YSP+SP+YSP SPNY + +SP+Y P S
Sbjct: 1604 SPSYSPTSPSYSPTSPNY-SPTSPSYSPTS 1632
[92][TOP]
>UniRef100_UPI00005A0B1E PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide
A isoform 9 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B1E
Length = 1851
Score = 105 bits (262), Expect = 2e-21
Identities = 68/181 (37%), Positives = 96/181 (53%), Gaps = 13/181 (7%)
Frame = +2
Query: 17 SFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGA 196
S+SP ++ A +PG TP +P SP SP Y+ SP + + +
Sbjct: 1529 SYSP---TSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNYSP-TSPSYSPTS 1584
Query: 197 GAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARG---GPAAGY 358
+Y+P SP+Y TSP YSP++P+ + +SP YSP YSPTSPS P +
Sbjct: 1585 PSYSPTSPSYSPTSPS--YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1642
Query: 359 ASPQSPGYVPTSPAYARPGTVVAAANV-YSPSSPAYSPFSPNYAAA------SSPAYQPP 517
SP SP Y PTSP+Y+ + + YSP+SP+YSP SPNY+ + +SP+Y P
Sbjct: 1643 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPSRPNYTPTSPSYSPT 1702
Query: 518 S 520
S
Sbjct: 1703 S 1703
Score = 100 bits (250), Expect = 5e-20
Identities = 65/159 (40%), Positives = 88/159 (55%), Gaps = 11/159 (6%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP +P SP SP Y+ SP + + + +Y+P SP+Y TSP YS
Sbjct: 1591 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 1637
Query: 257 PSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYA--RPGTV 421
P++P+ + +SP YSP YSPTSPS P + SP SP Y PTSP Y+ RP
Sbjct: 1638 PTSPSYSPTSPSYSPTSPSYSPTSPSYS----PTSPSYSPTSPSYSPTSPNYSPSRPNYT 1693
Query: 422 VAAANVYSPSSPAYSPFSPNYAAAS------SPAYQPPS 520
+ + YSP+SP+YSP SP+Y+ S SP+Y P S
Sbjct: 1694 PTSPS-YSPTSPSYSPSSPSYSPTSPKYTPTSPSYSPSS 1731
Score = 96.3 bits (238), Expect = 1e-18
Identities = 65/170 (38%), Positives = 81/170 (47%), Gaps = 4/170 (2%)
Frame = +2
Query: 23 SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
SP S + T +P R +P SP SP Y+ SP +
Sbjct: 1668 SPSYSPTSPSYSPTSPNYSPSRPNYTPTSPSYSPTSPSYSPSSP---------------S 1712
Query: 203 YAPASPAYMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYASPQS 373
Y+P SP Y TSP YSPS+P +SP Y SP YSPTSP + P + SP +
Sbjct: 1713 YSPTSPKYTPTSP--SYSPSSPEYTPTSPKYSPTSPKYSPTSP----KYSPTSPTYSPTT 1766
Query: 374 PGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
P Y PTSP Y+ V + YSP+SP YSP SP Y + +SP Y P S
Sbjct: 1767 PKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTSPKY-SPTSPTYSPTS 1815
Score = 93.6 bits (231), Expect = 8e-18
Identities = 66/166 (39%), Positives = 90/166 (54%), Gaps = 2/166 (1%)
Frame = +2
Query: 29 IMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAA-MSPRFGGGLGGGPAGGAGAY 205
I ++ G A +PG SPA TP SP SPG ++ P GG + + +Y
Sbjct: 1479 IPTNIPGLGAAGRDGFSPGYSPAWSPTPG-SPGSPGPSSPYIPSPGGAM-------SPSY 1530
Query: 206 APASPAYMATSPGMGYSPSTPALAVSSPGYSPGYSPTSPSVGARGGPAAGYASPQSPGYV 385
+P SPAY SPG GY+P +P+ + +SP YSP TSPS SP SP Y
Sbjct: 1531 SPTSPAYEPRSPG-GYTPQSPSYSPTSPSYSP----TSPSY-----------SPTSPNYS 1574
Query: 386 PTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
PTSP+Y+ + + YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1575 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 1619
Score = 92.0 bits (227), Expect = 2e-17
Identities = 62/167 (37%), Positives = 81/167 (48%), Gaps = 3/167 (1%)
Frame = +2
Query: 23 SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
SP S + + T + TP +P +P SP Y+ SP+
Sbjct: 1703 SPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYSPTSPK--------------- 1747
Query: 203 YAPASPAYMATSPGMGYSPSTPALAVSSPGYSPG---YSPTSPSVGARGGPAAGYASPQS 373
Y+P SP Y TSP YSP+TP + +SP YSP Y+PTSP + P + SP S
Sbjct: 1748 YSPTSPKYSPTSPT--YSPTTPKYSPTSPTYSPTSPVYTPTSP----KYSPTSPTYSPTS 1801
Query: 374 PGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQP 514
P Y PTSP Y+ + YSP+SP YSP SP Y + +SPA P
Sbjct: 1802 PKYSPTSPTYS---PTSPKGSTYSPTSPGYSPTSPTY-SLTSPAISP 1844
[93][TOP]
>UniRef100_UPI00017B0A92 UPI00017B0A92 related cluster n=1 Tax=Tetraodon nigroviridis
RepID=UPI00017B0A92
Length = 1714
Score = 105 bits (262), Expect = 2e-21
Identities = 75/191 (39%), Positives = 93/191 (48%), Gaps = 22/191 (11%)
Frame = +2
Query: 14 ASFSPIMSSADAAGRATPGRMTPGR----SPAGRFTPRMSPASPGYAAMSPRFGGGLGGG 181
+ FSP S A + +PG P SP G +P SP SP Y SP GG
Sbjct: 1532 SGFSPGYSPAWSPTPGSPGSPGPASPYIPSPGGAMSPNYSPTSPAYEPRSP-------GG 1584
Query: 182 PAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---------GYSPTSPSVGA 334
+ Y+P SP+Y TSP YSP++P+ + +SP YSP YSPTSPS
Sbjct: 1585 YTPQSPGYSPTSPSYSPTSPS--YSPTSPSYSPTSPSYSPTSPSGPTSPSYSPTSPSY-- 1640
Query: 335 RGGPAAGYASPQSPGYVPTSPAYARPGTVVAAA------NVYS-PSSPAYSPFSPNYAAA 493
P + SP SP Y PTSP Y P +V + +VYS P+SP YSP SP +
Sbjct: 1641 --SPTSPSYSPTSPSYSPTSPNYTPPHQLVPTSPYTPHISVYSPPTSPTYSPTSPKGSTY 1698
Query: 494 S--SPAYQPPS 520
S SP Y P S
Sbjct: 1699 SPTSPGYSPTS 1709
Score = 99.8 bits (247), Expect = 1e-19
Identities = 73/170 (42%), Positives = 90/170 (52%), Gaps = 1/170 (0%)
Frame = +2
Query: 14 ASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAA-MSPRFGGGLGGGPAG 190
A FSP +S DA+G +PG SPA TP SP SPG A+ P GG +
Sbjct: 1521 AGFSPSAAS-DASG------FSPGYSPAWSPTPG-SPGSPGPASPYIPSPGGAMSPN--- 1569
Query: 191 GAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSPGYSPTSPSVGARGGPAAGYASPQ 370
Y+P SPAY SPG GY+P SPGYSPTSPS P + SP
Sbjct: 1570 ----YSPTSPAYEPRSPG-GYTPQ-----------SPGYSPTSPSYS----PTSPSYSPT 1609
Query: 371 SPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
SP Y PTSP+Y+ + YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1610 SPSYSPTSPSYSPTSPSGPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 1658
Score = 72.4 bits (176), Expect = 2e-11
Identities = 50/135 (37%), Positives = 62/135 (45%), Gaps = 7/135 (5%)
Frame = +2
Query: 23 SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
SP S + T +P SP+G +P SP SP Y+ SP +
Sbjct: 1603 SPSYSPTSPSYSPTSPSYSP-TSPSGPTSPSYSPTSPSYSPTSP---------------S 1646
Query: 203 YAPASPAYMATSPG-------MGYSPSTPALAVSSPGYSPGYSPTSPSVGARGGPAAGYA 361
Y+P SP+Y TSP + SP TP ++V SP SP YSPTSP
Sbjct: 1647 YSPTSPSYSPTSPNYTPPHQLVPTSPYTPHISVYSPPTSPTYSPTSPK--------GSTY 1698
Query: 362 SPQSPGYVPTSPAYA 406
SP SPGY PTSP Y+
Sbjct: 1699 SPTSPGYSPTSPTYS 1713
[94][TOP]
>UniRef100_A8IRZ2 DNA-directed RNA polymerase n=1 Tax=Chlamydomonas reinhardtii
RepID=A8IRZ2_CHLRE
Length = 1789
Score = 105 bits (262), Expect = 2e-21
Identities = 72/163 (44%), Positives = 85/163 (52%), Gaps = 10/163 (6%)
Frame = +2
Query: 62 TPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGG------GPAGGAGAYAPASPA 223
TPGRMTP RSPA P MSP+ SP G G PA G G P SP
Sbjct: 1491 TPGRMTPSRSPARTPGP-MSPSHLLSPMHSPFVGSGFSPMHPGAFSPAHGGGVGGPMSP- 1548
Query: 224 YMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYASPQSPGYVPTS 394
GYSP++P + +SP Y SP YSPTSP+ P + SP SP Y PTS
Sbjct: 1549 --------GYSPTSPGYSPTSPRYSPTSPAYSPTSPAY----SPTSPAYSPTSPAYSPTS 1596
Query: 395 PAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
PAY+ + + YSP+SPAYSP SP Y + +SPAY P S
Sbjct: 1597 PAYSPTSPAYSPTSPAYSPTSPAYSPTSPAY-SPTSPAYSPTS 1638
Score = 92.8 bits (229), Expect = 1e-17
Identities = 60/158 (37%), Positives = 75/158 (47%)
Frame = +2
Query: 23 SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
SP S A T +P +P SP SP Y+ SP + + + A
Sbjct: 1575 SPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAY--------SPTSPA 1626
Query: 203 YAPASPAYMATSPGMGYSPSTPALAVSSPGYSPGYSPTSPSVGARGGPAAGYASPQSPGY 382
Y+P SPAY TSP YSP++PA + +SP YSP YSPTSP SP SP
Sbjct: 1627 YSPTSPAYSPTSPA--YSPTSPAYSPTSPAYSPAYSPTSPQY-----------SPTSPSM 1673
Query: 383 VPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAAS 496
PTSP YSP+SP YSP SPNY+ ++
Sbjct: 1674 SPTSPR-------------YSPTSPNYSPTSPNYSPST 1698
[95][TOP]
>UniRef100_C4R4Y0 DNA-directed RNA polymerase n=1 Tax=Pichia pastoris GS115
RepID=C4R4Y0_PICPG
Length = 1743
Score = 105 bits (262), Expect = 2e-21
Identities = 68/172 (39%), Positives = 93/172 (54%), Gaps = 6/172 (3%)
Frame = +2
Query: 23 SPIMSSADAAGRATPG--RMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGA 196
SP ++ +PG +PG +P +PR SP SPGY+ SP + + +
Sbjct: 1523 SPYQPTSPGLSATSPGFAPTSPGFAPT---SPRYSPTSPGYSPTSPSYSP-TSPSYSPTS 1578
Query: 197 GAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASP 367
+Y+P SP+Y TSP YSP++P+ + +SP YSP YSPTSPS P + SP
Sbjct: 1579 PSYSPTSPSYSPTSPS--YSPTSPSYSPTSPSYSPTSPSYSPTSPSY----SPTSPQYSP 1632
Query: 368 QSPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
SP Y PTSP Y+ + + YSP+SP YSP SP Y + +SP Y P S
Sbjct: 1633 TSPQYSPTSPQYSPTSPQYSPTSPQYSPTSPQYSPTSPQY-SPTSPQYSPTS 1683
Score = 98.6 bits (244), Expect = 2e-19
Identities = 64/165 (38%), Positives = 87/165 (52%), Gaps = 9/165 (5%)
Frame = +2
Query: 53 GRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMA 232
G+AT G TP + A ++ + SP G G +GG YA Y
Sbjct: 1469 GKATQGSATPYDNNA-QYDDEFNHDDVADVMFSPMAETGSGDDRSGGLTEYAGIQSPYQP 1527
Query: 233 TSPGM-----GYSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVP 388
TSPG+ G++P++P A +SP YSP GYSPTSPS P + SP SP Y P
Sbjct: 1528 TSPGLSATSPGFAPTSPGFAPTSPRYSPTSPGYSPTSPSYS----PTSPSYSPTSPSYSP 1583
Query: 389 TSPAYARPGTVVAAANV-YSPSSPAYSPFSPNYAAASSPAYQPPS 520
TSP+Y+ + + YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1584 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 1627
Score = 92.4 bits (228), Expect = 2e-17
Identities = 61/149 (40%), Positives = 78/149 (52%), Gaps = 3/149 (2%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP +P SP SP Y+ SP++ + + Y+P SP Y TSP YS
Sbjct: 1606 SPSYSPT---SPSYSPTSPSYSPTSPQY--------SPTSPQYSPTSPQYSPTSPQ--YS 1652
Query: 257 PSTPALAVSSPGYSPG---YSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVA 427
P++P + +SP YSP YSPTSP P + SP SP Y PTSP Y+
Sbjct: 1653 PTSPQYSPTSPQYSPTSPQYSPTSPQYS----PTSPQYSPTSPQYSPTSPQYS------P 1702
Query: 428 AANVYSPSSPAYSPFSPNYAAASSPAYQP 514
+ YSP+SP YSP SP Y+ A SP Y P
Sbjct: 1703 TSPQYSPTSPQYSPTSPQYSPA-SPQYSP 1730
Score = 73.9 bits (180), Expect = 6e-12
Identities = 56/158 (35%), Positives = 72/158 (45%), Gaps = 5/158 (3%)
Frame = +2
Query: 23 SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
SP S + T + +P +P+ SP SP Y+ SP++ + +
Sbjct: 1613 SPSYSPTSPSYSPTSPQYSPTSPQYSPTSPQYSPTSPQYSPTSPQY--------SPTSPQ 1664
Query: 203 YAPASPAYMATSPGMGYSPSTPALAVSSPGYSPG---YSPTSPSVGARGGPAAGYASPQS 373
Y+P SP Y TSP YSP++P + +SP YSP YSPTSP SP S
Sbjct: 1665 YSPTSPQYSPTSPQ--YSPTSPQYSPTSPQYSPTSPQYSPTSPQY-----------SPTS 1711
Query: 374 PGYVPTSPAYARPGTVVAAANVYSPSSPAYSP--FSPN 481
P Y PTSP YSP+SP YSP SPN
Sbjct: 1712 PQYSPTSPQ-------------YSPASPQYSPSRHSPN 1736
[96][TOP]
>UniRef100_P35074 DNA-directed RNA polymerase II subunit RPB1 n=1 Tax=Caenorhabditis
briggsae RepID=RPB1_CAEBR
Length = 1853
Score = 105 bits (262), Expect = 2e-21
Identities = 73/181 (40%), Positives = 97/181 (53%), Gaps = 9/181 (4%)
Frame = +2
Query: 5 NATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPG--YAAMSPRFGGGLGG 178
N + +SP + +AG + G + G SP SPASPG A+SPR G
Sbjct: 1516 NYSGPWSPTGGMSPSAGFSPAGNLDGGASPFNE--GGWSPASPGDPLGALSPRTPAYGGM 1573
Query: 179 GPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY------SPGYSPTSPSVGARG 340
P G Y+PASP + TSP YSP++P+ + +SP + SP YSPTSPS
Sbjct: 1574 SP----GVYSPASPGFSMTSPH--YSPTSPSYSPTSPAHHGQSPVSPSYSPTSPSYS--- 1624
Query: 341 GPAAGYASPQSPGYVPTSPAYARPGTVVAAANV-YSPSSPAYSPFSPNYAAASSPAYQPP 517
P + SP SP Y PTSP+Y+ + + YSP+SP+YSP SP+Y + SSP Y P
Sbjct: 1625 -PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPSSPRYSPT 1682
Query: 518 S 520
S
Sbjct: 1683 S 1683
Score = 104 bits (260), Expect = 3e-21
Identities = 65/152 (42%), Positives = 81/152 (53%), Gaps = 4/152 (2%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGM-GY 253
+P SP+ +PR SP SP Y+ SP + + + Y+P SP Y TSP GY
Sbjct: 1669 SPSYSPS---SPRYSPTSPTYSPTSPTY--------SPTSPTYSPTSPTYSPTSPSYEGY 1717
Query: 254 SPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVV 424
SPS+P + SSP YSP YSPTSP P + SP SP Y P+SP Y
Sbjct: 1718 SPSSPKYSPSSPTYSPTSPSYSPTSPQYS----PTSPQYSPSSPTYTPSSPTYNPTSPRA 1773
Query: 425 AAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
++ YSP+SP YSP SP+Y SSP Y P S
Sbjct: 1774 FSSPQYSPTSPTYSPTSPSY-TPSSPQYSPTS 1804
Score = 101 bits (252), Expect = 3e-20
Identities = 64/162 (39%), Positives = 83/162 (51%), Gaps = 4/162 (2%)
Frame = +2
Query: 47 AAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAY 226
A G +PG +P +P SP SP Y+ SP G +P SP+Y
Sbjct: 1569 AYGGMSPGVYSPASPGFSMTSPHYSPTSPSYSPTSPAHHG------------QSPVSPSY 1616
Query: 227 MATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSP 397
TSP YSP++P+ + +SP YSP YSPTSPS P + SP SP Y PTSP
Sbjct: 1617 SPTSPS--YSPTSPSYSPTSPSYSPTSPSYSPTSPSY----SPTSPSYSPTSPSYSPTSP 1670
Query: 398 AYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
+Y+ + + YSP+SP YSP SP Y + +SP Y P S
Sbjct: 1671 SYSPSSPRYSPTSPTYSPTSPTYSPTSPTY-SPTSPTYSPTS 1711
Score = 97.4 bits (241), Expect = 5e-19
Identities = 70/186 (37%), Positives = 88/186 (47%), Gaps = 20/186 (10%)
Frame = +2
Query: 23 SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGP--AGGA 196
SP S + T +P +P SP SP Y+ SP + G P + +
Sbjct: 1669 SPSYSPSSPRYSPTSPTYSPTSPTYSPTSPTYSPTSPTYSPTSPSYEGYSPSSPKYSPSS 1728
Query: 197 GAYAPASPAYMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYASP 367
Y+P SP+Y TSP YSP++P + SSP Y SP Y+PTSP R + Y SP
Sbjct: 1729 PTYSPTSPSYSPTSPQ--YSPTSPQYSPSSPTYTPSSPTYNPTSP----RAFSSPQY-SP 1781
Query: 368 QSPGYVPTSPAYA---------------RPGTVVAAANVYSPSSPAYSPFSPNYAAASSP 502
SP Y PTSP+Y P +N YSPSSP YSP SP Y+ A SP
Sbjct: 1782 TSPTYSPTSPSYTPSSPQYSPTSPTYTPSPADQPGTSNQYSPSSPTYSPSSPTYSPA-SP 1840
Query: 503 AYQPPS 520
+Y P S
Sbjct: 1841 SYSPSS 1846
Score = 81.3 bits (199), Expect = 4e-14
Identities = 55/161 (34%), Positives = 78/161 (48%), Gaps = 10/161 (6%)
Frame = +2
Query: 17 SFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGA 196
++SP S + ++P + +P +P SP SP Y+ SP++ + +
Sbjct: 1706 TYSPTSPSYEGYSPSSP-KYSPSSPTYSPTSPSYSPTSPQYSPTSPQY--------SPSS 1756
Query: 197 GAYAPASPAYMATSP----GMGYSPSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAG 355
Y P+SP Y TSP YSP++P + +SP Y SP YSPTSP+ G
Sbjct: 1757 PTYTPSSPTYNPTSPRAFSSPQYSPTSPTYSPTSPSYTPSSPQYSPTSPTYTPSPADQPG 1816
Query: 356 YA---SPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSP 469
+ SP SP Y P+SP Y+ A+ YSPSSP Y P
Sbjct: 1817 TSNQYSPSSPTYSPSSPTYS------PASPSYSPSSPTYDP 1851
Score = 68.2 bits (165), Expect = 3e-10
Identities = 53/164 (32%), Positives = 74/164 (45%), Gaps = 20/164 (12%)
Frame = +2
Query: 89 SPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTP 268
SP+ F+P SP + G ++P + G P GG SP G+SP+
Sbjct: 1497 SPSREFSPAHSPWNSG---VTPNYSGPWS--PTGGM-------------SPSAGFSPAGN 1538
Query: 269 ALAVSSPGYSPGYSPTSPS---------VGARGGPAAGYASPQSPGYVPTSPAYARPGTV 421
+SP G+SP SP A GG + G SP SPG+ TSP Y+
Sbjct: 1539 LDGGASPFNEGGWSPASPGDPLGALSPRTPAYGGMSPGVYSPASPGFSMTSPHYSPTSPS 1598
Query: 422 VAAAN-----------VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
+ + YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1599 YSPTSPAHHGQSPVSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 1641
[97][TOP]
>UniRef100_UPI000186D846 predicted protein n=1 Tax=Pediculus humanus corporis
RepID=UPI000186D846
Length = 1885
Score = 105 bits (261), Expect = 3e-21
Identities = 73/187 (39%), Positives = 98/187 (52%), Gaps = 26/187 (13%)
Frame = +2
Query: 38 SADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPA---------- 187
S A TPG P SP+G + S SPGY+ SP+ G GP+
Sbjct: 1505 SPHAGSGMTPGG--PSFSPSG--SSDASGLSPGYSPWSPQPGSPSSPGPSNSPYVPSPGG 1560
Query: 188 GGAGAYAPASPAYMATSPGM-----GYSPSTPALAVSSPGYSPG----------YSPTSP 322
G + +Y+P+SPA+ TSP M YSP++P+ + SSP YSP YSPTSP
Sbjct: 1561 GMSPSYSPSSPAFAPTSPSMTPTSSNYSPTSPSYSPSSPNYSPNSPSYSPTSPSYSPTSP 1620
Query: 323 SVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASS 499
S P + SP SP Y PTSP+Y+ + + YSP+SP+YSP SP+Y + +S
Sbjct: 1621 SY----SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTS 1675
Query: 500 PAYQPPS 520
P+Y P S
Sbjct: 1676 PSYSPTS 1682
Score = 104 bits (259), Expect = 4e-21
Identities = 73/175 (41%), Positives = 102/175 (58%), Gaps = 7/175 (4%)
Frame = +2
Query: 17 SFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRM-SPASPG--YAAMSPRFGGGLGGGPA 187
SFSP S+DA+G ++PG SP ++P+ SP+SPG + P GGG+ +
Sbjct: 1518 SFSP-SGSSDASG------LSPGYSP---WSPQPGSPSSPGPSNSPYVPSPGGGMSPSYS 1567
Query: 188 GGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGY 358
+ A+AP SP+ TS YSP++P+ + SSP Y SP YSPTSPS P +
Sbjct: 1568 PSSPAFAPTSPSMTPTS--SNYSPTSPSYSPSSPNYSPNSPSYSPTSPSY----SPTSPS 1621
Query: 359 ASPQSPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
SP SP Y PTSP+Y+ + + YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1622 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 1675
Score = 101 bits (252), Expect = 3e-20
Identities = 60/154 (38%), Positives = 86/154 (55%), Gaps = 6/154 (3%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP +P SP SP Y+ SP + + + +Y+P SP+Y TSP YS
Sbjct: 1626 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 1672
Query: 257 PSTPALAVSSPGYSP---GYSPTSPSVGARG---GPAAGYASPQSPGYVPTSPAYARPGT 418
P++P+ + +SP YSP YSPTSPS P + SP SP Y P SP+++
Sbjct: 1673 PTSPSYSPTSPSYSPTSPSYSPTSPSYSRTSPSYSPTSPSYSPSSPNYTPASPSFSPTSP 1732
Query: 419 VVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
+ ++ YSP+SP+YSP SP Y + +SP+Y P S
Sbjct: 1733 SLYSSPRYSPASPSYSPGSPKY-SPTSPSYSPTS 1765
Score = 99.0 bits (245), Expect = 2e-19
Identities = 68/178 (38%), Positives = 88/178 (49%), Gaps = 7/178 (3%)
Frame = +2
Query: 8 ATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPA 187
A+ SFSP S ++ R +P +P SP +P+ SP SP Y+ SP + A
Sbjct: 1723 ASPSFSPTSPSLYSSPRYSPA--SPSYSPG---SPKYSPTSPSYSPTSPSY--------A 1769
Query: 188 GGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSPG----YSPTSPSVGARG---GP 346
+ Y P SP Y TSP YSP++P+ + SSP ++PG YSPTSP P
Sbjct: 1770 SVSPQYTPTSPQYSPTSPT--YSPTSPSYSPSSPSHTPGASTRYSPTSPKYSPTSLSYSP 1827
Query: 347 AAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
A+ SP S Y PTSP Y + YS SSP YSP P + +SP Y P S
Sbjct: 1828 ASPQYSPSSSKYSPTSPTYT------PTSPDYSASSPTYSPTGPPSYSPTSPTYSPTS 1879
Score = 94.0 bits (232), Expect = 6e-18
Identities = 67/183 (36%), Positives = 86/183 (46%), Gaps = 15/183 (8%)
Frame = +2
Query: 23 SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
SP S + T +P R +P SP SP Y+ SP
Sbjct: 1675 SPSYSPTSPSYSPTSPSYSPTSPSYSRTSPSYSPTSPSYSPSSPN--------------- 1719
Query: 203 YAPASPAYMATSPGMGYSPSTPALAVSSPGYSPG---YSPTSP----------SVGARGG 343
Y PASP++ TSP + S+P + +SP YSPG YSPTSP SV +
Sbjct: 1720 YTPASPSFSPTSPSLY---SSPRYSPASPSYSPGSPKYSPTSPSYSPTSPSYASVSPQYT 1776
Query: 344 PAAGYASPQSPGYVPTSPAY--ARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPP 517
P + SP SP Y PTSP+Y + P A+ YSP+SP YSP S +Y+ A SP Y P
Sbjct: 1777 PTSPQYSPTSPTYSPTSPSYSPSSPSHTPGASTRYSPTSPKYSPTSLSYSPA-SPQYSPS 1835
Query: 518 SRR 526
S +
Sbjct: 1836 SSK 1838
Score = 74.7 bits (182), Expect = 4e-12
Identities = 58/159 (36%), Positives = 77/159 (48%), Gaps = 10/159 (6%)
Frame = +2
Query: 74 MTPGRSPAGRFTPRMSPASPGY-AAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMG 250
+TP SP + TP +P Y +A SP G G+ G G
Sbjct: 1481 VTPSMSP--QMTPWNQGETPAYVSAWSPHAGSGMTPG--------------------GPS 1518
Query: 251 YSPSTPALAVSSPGYSPGYSPTSPSVGARGGPAAGYA----SP---QSPGYVPTSPAYA- 406
+SPS + + G SPGYSP SP G+ P + SP SP Y P+SPA+A
Sbjct: 1519 FSPSGSS---DASGLSPGYSPWSPQPGSPSSPGPSNSPYVPSPGGGMSPSYSPSSPAFAP 1575
Query: 407 -RPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
P ++N YSP+SP+YSP SPNY + +SP+Y P S
Sbjct: 1576 TSPSMTPTSSN-YSPTSPSYSPSSPNY-SPNSPSYSPTS 1612
[98][TOP]
>UniRef100_A7AWJ0 DNA-directed RNA polymerase n=1 Tax=Babesia bovis RepID=A7AWJ0_BABBO
Length = 1746
Score = 105 bits (261), Expect = 3e-21
Identities = 72/187 (38%), Positives = 95/187 (50%), Gaps = 19/187 (10%)
Frame = +2
Query: 17 SFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRM---SPASPGYAAMSPRFGGGLGGGPA 187
SFSP + S + + ++P +P M SP SP Y+ SP +G GG +
Sbjct: 1545 SFSPTIMSPQSPVSPSYAPLSPNPLSPNPLSPSMGMMSPTSPVYSPTSPVYGQA-GGVYS 1603
Query: 188 GGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARG---GPA 349
+ AY+P SP Y TSP YSP++PA + +SP YSP YSPTSP+ P
Sbjct: 1604 PASPAYSPTSPLYSPTSPV--YSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPT 1661
Query: 350 AGYASPQSPGYVPTSPAYARPGTVVA----------AANVYSPSSPAYSPFSPNYAAASS 499
+ SP SP Y PTSPAY+ + + YSP+SPAYSP SP Y + +S
Sbjct: 1662 SPAYSPTSPAYSPTSPAYSPTSPNLGYLPTSPAYRPTSPAYSPTSPAYSPTSPAY-SPTS 1720
Query: 500 PAYQPPS 520
P Y P S
Sbjct: 1721 PVYSPTS 1727
Score = 98.6 bits (244), Expect = 2e-19
Identities = 63/159 (39%), Positives = 81/159 (50%), Gaps = 4/159 (2%)
Frame = +2
Query: 23 SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
SP+ S G +P +P SP SP Y+ SP + + + A
Sbjct: 1585 SPVYSPTSPVYGQAGGVYSPASPAYSPTSPLYSPTSPVYSPTSPAY--------SPTSPA 1636
Query: 203 YAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQS 373
Y+P SPAY TSP YSP++PA + +SP YSP YSPTSP+ P GY P S
Sbjct: 1637 YSPTSPAYSPTSPA--YSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTS-PNLGYL-PTS 1692
Query: 374 PGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYA 487
P Y PTSPAY+ + + YSP+SP YSP SP Y+
Sbjct: 1693 PAYRPTSPAYSPTSPAYSPTSPAYSPTSPVYSPTSPEYS 1731
Score = 92.0 bits (227), Expect = 2e-17
Identities = 70/182 (38%), Positives = 92/182 (50%), Gaps = 11/182 (6%)
Frame = +2
Query: 8 ATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRM----SPASPGYAAMSPRFGGGLG 175
A SPI++ + + +P T ++ G F+P + SP SP YA +SP L
Sbjct: 1516 AALMMSPIVNVSSPSFVTSPAVDT--KALGGSFSPTIMSPQSPVSPSYAPLSPN---PLS 1570
Query: 176 GGPAGGA-GAYAPASPAYMATSPGMG-----YSPSTPALAVSSPGYSPGYSPTSPSVGAR 337
P + G +P SP Y TSP G YSP++PA + +SP YSP TSP
Sbjct: 1571 PNPLSPSMGMMSPTSPVYSPTSPVYGQAGGVYSPASPAYSPTSPLYSP----TSPVY--- 1623
Query: 338 GGPAAGYASPQSPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQP 514
SP SP Y PTSPAY+ + + YSP+SPAYSP SP Y + +SPAY P
Sbjct: 1624 --------SPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAY-SPTSPAYSP 1674
Query: 515 PS 520
S
Sbjct: 1675 TS 1676
Score = 86.7 bits (213), Expect = 9e-16
Identities = 59/156 (37%), Positives = 73/156 (46%), Gaps = 3/156 (1%)
Frame = +2
Query: 23 SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
SP+ S A T +P +P SP SP Y+ SP + + + A
Sbjct: 1620 SPVYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAY--------SPTSPA 1671
Query: 203 YAPASPAYMATSPGMGYSPSTPALAVSSPGYSPGYSPTSPSVGARGGPAAGYASPQSPGY 382
Y+P SPAY TSP +GY P++PA + SP YSPTSP+ SP SP Y
Sbjct: 1672 YSPTSPAYSPTSPNLGYLPTSPAYRPT----SPAYSPTSPAY-----------SPTSPAY 1716
Query: 383 VPTSPAYARPGTVVAAANVYSPSSPAYS---PFSPN 481
PTSP VYSP+SP YS PFSPN
Sbjct: 1717 SPTSP-------------VYSPTSPEYSPEDPFSPN 1739
Score = 74.7 bits (182), Expect = 4e-12
Identities = 62/176 (35%), Positives = 81/176 (46%), Gaps = 12/176 (6%)
Frame = +2
Query: 29 IMSSADAAGRATPGRMTPGRSPAGRFTPRMSPA--SPGYAA--MSPRFGGGLGGGPAGGA 196
IM + +G +P +P + +SP SP YAA MSP +
Sbjct: 1477 IMPDSALSGFTSPESTSPDSMSPAKINSMLSPLPFSPSYAALMMSPI---------VNVS 1527
Query: 197 GAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSPGYSPTSPSVGARG--GPAAGYASPQ 370
SPA + G +SP+ ++ SP SP Y+P SP+ + P+ G SP
Sbjct: 1528 SPSFVTSPAVDTKALGGSFSPTI--MSPQSP-VSPSYAPLSPNPLSPNPLSPSMGMMSPT 1584
Query: 371 SPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAAS------SPAYQPPS 520
SP Y PTSP Y + G VYSP+SPAYSP SP Y+ S SPAY P S
Sbjct: 1585 SPVYSPTSPVYGQAG------GVYSPASPAYSPTSPLYSPTSPVYSPTSPAYSPTS 1634
[99][TOP]
>UniRef100_C6HNU4 DNA-directed RNA polymerase II n=1 Tax=Ajellomyces capsulatus H143
RepID=C6HNU4_AJECH
Length = 668
Score = 105 bits (261), Expect = 3e-21
Identities = 73/185 (39%), Positives = 96/185 (51%), Gaps = 16/185 (8%)
Frame = +2
Query: 14 ASFSPIMSSADAAGRATPGRMTPGR--SPAGRF-----TPRMSPAS------PGYAAMSP 154
A F+ S + G + G +PG SP+ F +PR SP+S PG + SP
Sbjct: 460 AGFTEYQPSGFSGGFSPHGARSPGGGYSPSSPFNTSPTSPRYSPSSGYSPTSPGMSITSP 519
Query: 155 RFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPS 325
RF G PA + A+AP SPAY TSP SP++P+ + +SPG+ SP YSPTSPS
Sbjct: 520 RFMSSPGFSPA--SPAFAPTSPAYSPTSPSYQQSPTSPSYSPTSPGFSPTSPSYSPTSPS 577
Query: 326 VGARGGPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPA 505
PA+ SP SP Y PTSPA + + SP+SP Y+P SP ++ S
Sbjct: 578 F----SPASPAFSPTSPSYSPTSPALG--VSTGRHLSPTSPTSPKYTPTSPGWSPTSPET 631
Query: 506 YQPPS 520
Y P S
Sbjct: 632 YSPTS 636
Score = 73.6 bits (179), Expect = 8e-12
Identities = 53/145 (36%), Positives = 70/145 (48%), Gaps = 13/145 (8%)
Frame = +2
Query: 8 ATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPA 187
A A SP S + + +P +P SP +P SP SP Y+ SP F PA
Sbjct: 533 AFAPTSPAYSPTSPSYQQSP--TSPSYSPT---SPGFSPTSPSYSPTSPSFS------PA 581
Query: 188 GGAGAYAPASPAYMATSPGMGYS---------PSTPALAVSSPGYSPG----YSPTSPSV 328
+ A++P SP+Y TSP +G S P++P +SPG+SP YSPTSP+
Sbjct: 582 --SPAFSPTSPSYSPTSPALGVSTGRHLSPTSPTSPKYTPTSPGWSPTSPETYSPTSPNF 639
Query: 329 GARGGPAAGYASPQSPGYVPTSPAY 403
G P SPGY PTSP +
Sbjct: 640 S---GSPTSPGGPTSPGYSPTSPTF 661
[100][TOP]
>UniRef100_C5DXL0 DNA-directed RNA polymerase n=1 Tax=Zygosaccharomyces rouxii CBS 732
RepID=C5DXL0_ZYGRC
Length = 1744
Score = 105 bits (261), Expect = 3e-21
Identities = 65/158 (41%), Positives = 90/158 (56%), Gaps = 7/158 (4%)
Frame = +2
Query: 68 GRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGM 247
G +PG SP+ +P SP SP Y+ SP + + + +Y+P SP+Y TSP
Sbjct: 1532 GVSSPGFSPS---SPTYSPTSPSYSPTSPSYSPP-SPNYSPTSPSYSPTSPSYSPTSPS- 1586
Query: 248 GYSPSTPALAVSSPGYSP---GYSPTSPSVGARG---GPAAGYASPQSPGYVPTSPAYAR 409
YSP++P+ + +SP YSP YSPTSPS P + SP SP Y PTSP+Y+
Sbjct: 1587 -YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1645
Query: 410 PGTVVAAANV-YSPSSPAYSPFSPNYAAASSPAYQPPS 520
+ + YSP+SP+YSP SPNY + +SP+Y P S
Sbjct: 1646 TSPSYSPTSPSYSPTSPSYSPTSPNY-SPTSPSYSPTS 1682
Score = 102 bits (253), Expect = 2e-20
Identities = 63/151 (41%), Positives = 84/151 (55%), Gaps = 3/151 (1%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP +P SP SP Y+ SP + + + +Y+P SP+Y TSP YS
Sbjct: 1605 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 1651
Query: 257 PSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVA 427
P++P+ + +SP YSP YSPTSPS P + SP SP Y PTSP+Y+
Sbjct: 1652 PTSPSYSPTSPSYSPTSPNYSPTSPSYS----PTSPSYSPTSPSYSPTSPSYS------P 1701
Query: 428 AANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
+ YSP+SP+YSP SPNY + SP Y P S
Sbjct: 1702 TSPSYSPTSPSYSPTSPNY-SPGSPTYSPSS 1731
Score = 100 bits (249), Expect = 6e-20
Identities = 68/176 (38%), Positives = 92/176 (52%), Gaps = 9/176 (5%)
Frame = +2
Query: 20 FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAG 199
FSP++ S A G T + F S G A +SP FGG G + +
Sbjct: 1492 FSPLVDSGSTDAMA--GGFTAYGGGSASF------GSYGDAPISPGFGGVSSPGFSPSSP 1543
Query: 200 AYAPASPAYMATSPGM-----GYSPSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAG 355
Y+P SP+Y TSP YSP++P+ + +SP Y SP YSPTSPS P +
Sbjct: 1544 TYSPTSPSYSPTSPSYSPPSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSY----SPTSP 1599
Query: 356 YASPQSPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
SP SP Y PTSP+Y+ + + YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1600 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 1654
Score = 90.9 bits (224), Expect = 5e-17
Identities = 58/139 (41%), Positives = 76/139 (54%), Gaps = 5/139 (3%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP +P SP SP Y+ SP + + + +Y+P SP+Y TSP YS
Sbjct: 1612 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 1658
Query: 257 PSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYA--RPGTV 421
P++P+ + +SP YSP YSPTSPS P + SP SP Y PTSP+Y+ P
Sbjct: 1659 PTSPSYSPTSPNYSPTSPSYSPTSPSYS----PTSPSYSPTSPSYSPTSPSYSPTSPSYS 1714
Query: 422 VAAANVYSPSSPAYSPFSP 478
+ N YSP SP YSP SP
Sbjct: 1715 PTSPN-YSPGSPTYSPSSP 1732
[101][TOP]
>UniRef100_C0NEY2 DNA-directed RNA polymerase n=1 Tax=Ajellomyces capsulatus G186AR
RepID=C0NEY2_AJECG
Length = 1234
Score = 105 bits (261), Expect = 3e-21
Identities = 73/185 (39%), Positives = 96/185 (51%), Gaps = 16/185 (8%)
Frame = +2
Query: 14 ASFSPIMSSADAAGRATPGRMTPGR--SPAGRF-----TPRMSPAS------PGYAAMSP 154
A F+ S + G + G +PG SP+ F +PR SP+S PG + SP
Sbjct: 1026 AGFTEYQPSGFSGGFSPHGARSPGGGYSPSSPFNTSPTSPRYSPSSGYSPTSPGMSITSP 1085
Query: 155 RFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPS 325
RF G PA + A+AP SPAY TSP SP++P+ + +SPG+ SP YSPTSPS
Sbjct: 1086 RFMSSPGFSPA--SPAFAPTSPAYSPTSPSYQQSPTSPSYSPTSPGFSPTSPSYSPTSPS 1143
Query: 326 VGARGGPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPA 505
PA+ SP SP Y PTSPA + + SP+SP Y+P SP ++ S
Sbjct: 1144 F----SPASPAFSPTSPSYSPTSPALG--VSTGRHLSPTSPTSPKYTPTSPGWSPTSPET 1197
Query: 506 YQPPS 520
Y P S
Sbjct: 1198 YSPTS 1202
Score = 73.6 bits (179), Expect = 8e-12
Identities = 53/145 (36%), Positives = 70/145 (48%), Gaps = 13/145 (8%)
Frame = +2
Query: 8 ATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPA 187
A A SP S + + +P +P SP +P SP SP Y+ SP F PA
Sbjct: 1099 AFAPTSPAYSPTSPSYQQSP--TSPSYSPT---SPGFSPTSPSYSPTSPSFS------PA 1147
Query: 188 GGAGAYAPASPAYMATSPGMGYS---------PSTPALAVSSPGYSPG----YSPTSPSV 328
+ A++P SP+Y TSP +G S P++P +SPG+SP YSPTSP+
Sbjct: 1148 --SPAFSPTSPSYSPTSPALGVSTGRHLSPTSPTSPKYTPTSPGWSPTSPETYSPTSPNF 1205
Query: 329 GARGGPAAGYASPQSPGYVPTSPAY 403
G P SPGY PTSP +
Sbjct: 1206 S---GSPTSPGGPTSPGYSPTSPTF 1227
[102][TOP]
>UniRef100_A6QYA7 DNA-directed RNA polymerase n=1 Tax=Ajellomyces capsulatus NAm1
RepID=A6QYA7_AJECN
Length = 1747
Score = 105 bits (261), Expect = 3e-21
Identities = 73/185 (39%), Positives = 96/185 (51%), Gaps = 16/185 (8%)
Frame = +2
Query: 14 ASFSPIMSSADAAGRATPGRMTPGR--SPAGRF-----TPRMSPAS------PGYAAMSP 154
A F+ S + G + G +PG SP+ F +PR SP+S PG + SP
Sbjct: 1539 AGFTEYQPSGFSGGFSPHGARSPGGGYSPSSPFNTSPTSPRYSPSSGYSPTSPGMSITSP 1598
Query: 155 RFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPS 325
RF G PA + A+AP SPAY TSP SP++P+ + +SPG+ SP YSPTSPS
Sbjct: 1599 RFMSSPGFSPA--SPAFAPTSPAYSPTSPSYQQSPTSPSYSPTSPGFSPTSPSYSPTSPS 1656
Query: 326 VGARGGPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPA 505
PA+ SP SP Y PTSPA + + SP+SP Y+P SP ++ S
Sbjct: 1657 F----SPASPAFSPTSPSYSPTSPALG--VSTGRHLSPTSPTSPKYTPTSPGWSPTSPET 1710
Query: 506 YQPPS 520
Y P S
Sbjct: 1711 YSPTS 1715
Score = 73.6 bits (179), Expect = 8e-12
Identities = 53/145 (36%), Positives = 70/145 (48%), Gaps = 13/145 (8%)
Frame = +2
Query: 8 ATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPA 187
A A SP S + + +P +P SP +P SP SP Y+ SP F PA
Sbjct: 1612 AFAPTSPAYSPTSPSYQQSP--TSPSYSPT---SPGFSPTSPSYSPTSPSFS------PA 1660
Query: 188 GGAGAYAPASPAYMATSPGMGYS---------PSTPALAVSSPGYSPG----YSPTSPSV 328
+ A++P SP+Y TSP +G S P++P +SPG+SP YSPTSP+
Sbjct: 1661 --SPAFSPTSPSYSPTSPALGVSTGRHLSPTSPTSPKYTPTSPGWSPTSPETYSPTSPNF 1718
Query: 329 GARGGPAAGYASPQSPGYVPTSPAY 403
G P SPGY PTSP +
Sbjct: 1719 S---GSPTSPGGPTSPGYSPTSPTF 1740
[103][TOP]
>UniRef100_UPI00005A0B1F PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide
A isoform 10 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B1F
Length = 1840
Score = 104 bits (260), Expect = 3e-21
Identities = 64/166 (38%), Positives = 89/166 (53%), Gaps = 13/166 (7%)
Frame = +2
Query: 62 TPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSP 241
+PG TP +P SP SP Y+ SP + + + +Y+P SP+Y TSP
Sbjct: 1537 SPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNYSP-TSPSYSPTSPSYSPTSPSYSPTSP 1595
Query: 242 GMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARG---GPAAGYASPQSPGYVPTSPAY 403
YSP++P+ + +SP YSP YSPTSPS P + SP SP Y PTSP+Y
Sbjct: 1596 S--YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1653
Query: 404 ARPGTVVAAANV-YSPSSPAYSPFSPNYAAA------SSPAYQPPS 520
+ + + YSP+SP+YSP SPNY+ + +SP+Y P S
Sbjct: 1654 SPTSPSYSPTSPSYSPTSPSYSPTSPNYSPSRPNYTPTSPSYSPTS 1699
Score = 99.4 bits (246), Expect = 1e-19
Identities = 64/159 (40%), Positives = 88/159 (55%), Gaps = 11/159 (6%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP +P SP SP Y+ SP + + + +Y+P SP+Y TSP YS
Sbjct: 1580 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 1626
Query: 257 PSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYA--RPGTV 421
P++P+ + +SP YSP YSPTSPS P + SP SP Y PTSP+Y+ P
Sbjct: 1627 PTSPSYSPTSPSYSPTSPSYSPTSPSYS----PTSPSYSPTSPSYSPTSPSYSPTSPNYS 1682
Query: 422 VAAANVYSPSSPAYSPFSPNYAAAS------SPAYQPPS 520
+ N Y+P+SP+YSP SP+Y+ S SP+Y P S
Sbjct: 1683 PSRPN-YTPTSPSYSPTSPSYSPTSPKYTPTSPSYSPSS 1720
Score = 94.4 bits (233), Expect = 4e-18
Identities = 61/152 (40%), Positives = 79/152 (51%), Gaps = 4/152 (2%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP +P SP+ P Y SP + + + +Y+P SP Y TSP YS
Sbjct: 1671 SPSYSPT---SPNYSPSRPNYTPTSPSY--------SPTSPSYSPTSPKYTPTSP--SYS 1717
Query: 257 PSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVA 427
PS+P +SP Y SP YSPTSP + P + SP +P Y PTSP Y+ V
Sbjct: 1718 PSSPEYTPTSPKYSPTSPKYSPTSP----KYSPTSPTYSPTTPKYSPTSPTYSPTSPVYT 1773
Query: 428 AAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
+ YSP+SP YSP SP Y + +SP Y P S
Sbjct: 1774 PTSPKYSPTSPTYSPTSPKY-SPTSPTYSPTS 1804
Score = 94.0 bits (232), Expect = 6e-18
Identities = 64/178 (35%), Positives = 85/178 (47%), Gaps = 12/178 (6%)
Frame = +2
Query: 23 SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
SP S + T +P R +P SP SP Y+ SP++ + +
Sbjct: 1664 SPSYSPTSPSYSPTSPNYSPSRPNYTPTSPSYSPTSPSYSPTSPKY--------TPTSPS 1715
Query: 203 YAPASPAYMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYASPQS 373
Y+P+SP Y TSP YSP++P + +SP Y SP YSPT+P + P + SP S
Sbjct: 1716 YSPSSPEYTPTSP--KYSPTSPKYSPTSPKYSPTSPTYSPTTP----KYSPTSPTYSPTS 1769
Query: 374 PGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAAS---------SPAYQPPS 520
P Y PTSP Y+ + YSP+SP YSP SP Y+ S SP Y P S
Sbjct: 1770 PVYTPTSPKYS------PTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTS 1821
Score = 91.7 bits (226), Expect = 3e-17
Identities = 62/167 (37%), Positives = 80/167 (47%), Gaps = 3/167 (1%)
Frame = +2
Query: 23 SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
SP S + T + TP +P +P SP Y+ SP+
Sbjct: 1692 SPSYSPTSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYSPTSPK--------------- 1736
Query: 203 YAPASPAYMATSPGMGYSPSTPALAVSSPGYSPG---YSPTSPSVGARGGPAAGYASPQS 373
Y+P SP Y TSP YSP+TP + +SP YSP Y+PTSP + P + SP S
Sbjct: 1737 YSPTSPKYSPTSPT--YSPTTPKYSPTSPTYSPTSPVYTPTSP----KYSPTSPTYSPTS 1790
Query: 374 PGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQP 514
P Y PTSP Y+ + YSP+SP YSP SP Y + +SPA P
Sbjct: 1791 PKYSPTSPTYS---PTSPKGSTYSPTSPGYSPTSPTY-SLTSPAISP 1833
Score = 90.5 bits (223), Expect = 6e-17
Identities = 67/165 (40%), Positives = 88/165 (53%), Gaps = 1/165 (0%)
Frame = +2
Query: 29 IMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYA 208
I ++ G A +PG SPA TP SP SPG + SP P+ G Y+
Sbjct: 1479 IPTNIPGLGAAGRDGFSPGYSPAWSPTPG-SPGSPGPS--SPYI-------PSPGE-LYS 1527
Query: 209 PASPAYMATSPGMGYSPSTPALAVSSPGYSPGYSPTSPSVGARGGPAAGYASPQSPGYVP 388
P SPAY SPG GY+P +P+ + +SP YSP TSPS SP SP Y P
Sbjct: 1528 PTSPAYEPRSPG-GYTPQSPSYSPTSPSYSP----TSPSY-----------SPTSPNYSP 1571
Query: 389 TSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
TSP+Y+ + + YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1572 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 1615
[104][TOP]
>UniRef100_Q6FQS9 DNA-directed RNA polymerase n=1 Tax=Candida glabrata
RepID=Q6FQS9_CANGA
Length = 1715
Score = 104 bits (260), Expect = 3e-21
Identities = 69/170 (40%), Positives = 94/170 (55%), Gaps = 4/170 (2%)
Frame = +2
Query: 23 SPIMSSADA-AGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAG 199
SP + DA A G +PG SP +P SP SP Y+ SP + + +
Sbjct: 1521 SPFGAYGDAPASPGFGGVSSPGFSPT---SPAYSPTSPSYSPTSPSY--------SPTSP 1569
Query: 200 AYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQ 370
+Y+P SP+Y TSP YSP++P+ + +SP YSP YSPTSPS P + SP
Sbjct: 1570 SYSPTSPSYSPTSPS--YSPTSPSYSPTSPSYSPTSPSYSPTSPSYS----PTSPSYSPT 1623
Query: 371 SPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
SP Y PTSP+Y+ + YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1624 SPSYSPTSPSYS------PTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 1666
Score = 101 bits (251), Expect = 4e-20
Identities = 66/171 (38%), Positives = 93/171 (54%), Gaps = 4/171 (2%)
Frame = +2
Query: 20 FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAG 199
FSP++ + + + G G +P + G A SP FGG G + +
Sbjct: 1492 FSPLVDAGSSDAMSGGFTAYGGAEYGGATSPF---GAYGDAPASPGFGGVSSPGFSPTSP 1548
Query: 200 AYAPASPAYMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYASPQ 370
AY+P SP+Y TSP YSP++P+ + +SP Y SP YSPTSPS P + SP
Sbjct: 1549 AYSPTSPSYSPTSP--SYSPTSPSYSPTSPSYSPTSPSYSPTSPSY----SPTSPSYSPT 1602
Query: 371 SPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
SP Y PTSP+Y+ + + YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1603 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 1652
Score = 101 bits (251), Expect = 4e-20
Identities = 64/170 (37%), Positives = 90/170 (52%), Gaps = 4/170 (2%)
Frame = +2
Query: 23 SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
SP S + T +P +P SP SP Y+ SP + + + +
Sbjct: 1547 SPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY--------SPTSPS 1598
Query: 203 YAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQS 373
Y+P SP+Y TSP YSP++P+ + +SP YSP YSPTSPS P + SP S
Sbjct: 1599 YSPTSPSYSPTSPS--YSPTSPSYSPTSPSYSPTSPSYSPTSPSYS----PTSPSYSPTS 1652
Query: 374 PGYVPTSPAYARPGTVVAAANV-YSPSSPAYSPFSPNYAAASSPAYQPPS 520
P Y PTSP+Y+ + + YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1653 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPGS 1701
Score = 94.0 bits (232), Expect = 6e-18
Identities = 57/141 (40%), Positives = 79/141 (56%), Gaps = 4/141 (2%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP +P SP SP Y+ SP + + + +Y+P SP+Y TSP YS
Sbjct: 1582 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 1628
Query: 257 PSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVA 427
P++P+ + +SP YSP YSPTSPS P + SP SP Y PTSP+Y+ +
Sbjct: 1629 PTSPSYSPTSPSYSPTSPSYSPTSPSYS----PTSPSYSPTSPSYSPTSPSYSPTSPSYS 1684
Query: 428 AANV-YSPSSPAYSPFSPNYA 487
+ YSP+SP+YSP SP Y+
Sbjct: 1685 PTSPSYSPTSPSYSPGSPTYS 1705
Score = 79.0 bits (193), Expect = 2e-13
Identities = 52/134 (38%), Positives = 67/134 (50%), Gaps = 3/134 (2%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP +P SP SP Y+ SP + + + +Y+P SP+Y TSP YS
Sbjct: 1610 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 1656
Query: 257 PSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVA 427
P++P+ + +SP YSP YSPTSPS SP SP Y PTSP+
Sbjct: 1657 PTSPSYSPTSPSYSPTSPSYSPTSPSY-----------SPTSPSYSPTSPS--------- 1696
Query: 428 AANVYSPSSPAYSP 469
YSP SP YSP
Sbjct: 1697 ----YSPGSPTYSP 1706
[105][TOP]
>UniRef100_A5DCV3 DNA-directed RNA polymerase II subunit RPB1 (Fragments) n=1
Tax=Pichia guilliermondii RepID=RPB1_PICGU
Length = 1579
Score = 104 bits (260), Expect = 3e-21
Identities = 67/171 (39%), Positives = 97/171 (56%), Gaps = 9/171 (5%)
Frame = +2
Query: 35 SSADAAGRATPGR--MTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYA 208
+++ A G A+PG +P SP +P SP SP Y+ SP + + + +Y+
Sbjct: 1366 ATSPAYGGASPGYGVTSPTYSPT---SPSYSPTSPSYSPTSPSYSP-TSPSYSPTSPSYS 1421
Query: 209 PASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARG---GPAAGYASPQ 370
P SP+Y TSP YSP++P+ + +SP YSP YSPTSPS P + SP
Sbjct: 1422 PTSPSYSPTSPS--YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1479
Query: 371 SPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
SP Y PTSP+Y+ + + +YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1480 SPSYSPTSPSYSPTSPSYSPTSPLYSPTSPSYSPTSPSY-SPTSPSYSPTS 1529
Score = 100 bits (250), Expect = 5e-20
Identities = 64/158 (40%), Positives = 86/158 (54%), Gaps = 10/158 (6%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP +P SP SP Y+ SP + + + +Y+P SP+Y TSP YS
Sbjct: 1410 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 1456
Query: 257 PSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVA 427
P++P+ + +SP YSP YSPTSPS P + SP SP Y PTSP Y+ +
Sbjct: 1457 PTSPSYSPTSPSYSPTSPSYSPTSPSYS----PTSPSYSPTSPSYSPTSPLYSPTSPSYS 1512
Query: 428 AANV-YSPSSPAYSPFSPNYAAAS------SPAYQPPS 520
+ YSP+SP+YSP SP+Y+ S SPAY P S
Sbjct: 1513 PTSPSYSPTSPSYSPTSPSYSPTSPQYSPTSPAYSPTS 1550
Score = 100 bits (249), Expect = 6e-20
Identities = 63/155 (40%), Positives = 85/155 (54%), Gaps = 7/155 (4%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP +P SP SP Y+ SP + + + +Y+P SP+Y TSP YS
Sbjct: 1424 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 1470
Query: 257 PSTPALAVSSPGYSP---GYSPTSPSVGARG---GPAAGYASPQSPGYVPTSPAYARPGT 418
P++P+ + +SP YSP YSPTSPS P + SP SP Y PTSP+Y+
Sbjct: 1471 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPLYSPTSPSYSPTSPSYSPTSPSYSPTSP 1530
Query: 419 VVAAANV-YSPSSPAYSPFSPNYAAASSPAYQPPS 520
+ + YSP+SPAYSP SP Y + +SP Y P S
Sbjct: 1531 SYSPTSPQYSPTSPAYSPTSPQY-SPNSPQYSPRS 1564
Score = 91.3 bits (225), Expect = 4e-17
Identities = 58/140 (41%), Positives = 76/140 (54%), Gaps = 3/140 (2%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP +P SP SP Y+ SP + + + +Y+P SP+Y TSP YS
Sbjct: 1452 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 1498
Query: 257 PSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVA 427
P++P + +SP YSP YSPTSPS P + SP SP Y PTSPAY+
Sbjct: 1499 PTSPLYSPTSPSYSPTSPSYSPTSPSYS----PTSPSYSPTSPQYSPTSPAYS------P 1548
Query: 428 AANVYSPSSPAYSPFSPNYA 487
+ YSP+SP YSP SP Y+
Sbjct: 1549 TSPQYSPNSPQYSPRSPLYS 1568
Score = 82.0 bits (201), Expect = 2e-14
Identities = 62/178 (34%), Positives = 82/178 (46%), Gaps = 13/178 (7%)
Frame = +2
Query: 26 PIMSSADAAGRATPGRMTPGRS-----------PAGRFTP-RMSPASPGYAAMSPRFGGG 169
P+ ++ A A G TP R F+P +P S G A++ +GG
Sbjct: 1294 PVGAAEGAGAYADDGGATPYREYDMEDDKIQFEEGAGFSPIHTAPVSDGAGALTA-YGGQ 1352
Query: 170 LGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSPGYSPTSPSVGARGGPA 349
G AY SPAY SPG G + SP YSPTSPS P
Sbjct: 1353 PGSPSPTSPFAYGATSPAYGGASPGYGVT-------------SPTYSPTSPSY----SPT 1395
Query: 350 AGYASPQSPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
+ SP SP Y PTSP+Y+ + + YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1396 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 1452
[106][TOP]
>UniRef100_B3RM26 DNA-directed RNA polymerase n=1 Tax=Trichoplax adhaerens
RepID=B3RM26_TRIAD
Length = 1784
Score = 104 bits (259), Expect = 4e-21
Identities = 65/153 (42%), Positives = 88/153 (57%), Gaps = 3/153 (1%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP +PR SP SP Y+ SPR+ + + +Y+P SP Y TSP YS
Sbjct: 1596 SPSYSPT---SPRYSPTSPSYSPTSPRY--------SPTSPSYSPTSPRYSPTSPS--YS 1642
Query: 257 PSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVA 427
P++P+ + +SP YSP YSPTSPS P + SP SP Y PTSP+Y+
Sbjct: 1643 PTSPSYSPTSPRYSPTSPSYSPTSPSYS----PTSPKYSPTSPRYSPTSPSYS------P 1692
Query: 428 AANVYSPSSPAYSPFSPNYAAASSPAYQPPSRR 526
+ YSP+SP+YSP SP+Y + +SP+Y P S R
Sbjct: 1693 TSPSYSPTSPSYSPTSPSY-SPTSPSYSPTSPR 1724
Score = 101 bits (252), Expect = 3e-20
Identities = 64/154 (41%), Positives = 86/154 (55%), Gaps = 6/154 (3%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP +PR SP SP Y+ SP + + + Y+P SP Y TSP YS
Sbjct: 1645 SPSYSPT---SPRYSPTSPSYSPTSPSY--------SPTSPKYSPTSPRYSPTSPS--YS 1691
Query: 257 PSTPALAVSSPGYSP---GYSPTSPS---VGARGGPAAGYASPQSPGYVPTSPAYARPGT 418
P++P+ + +SP YSP YSPTSPS R P + SP SP Y PTSP+Y+
Sbjct: 1692 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPRYSPTSPSYSPTSPRYSPTSPSYS---- 1747
Query: 419 VVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
+ YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1748 --PTSPRYSPTSPSYSPTSPSY-SPTSPSYSPTS 1778
Score = 100 bits (248), Expect = 8e-20
Identities = 70/192 (36%), Positives = 93/192 (48%), Gaps = 23/192 (11%)
Frame = +2
Query: 14 ASFSPIMSSADAAGRATPGRMTPGRSPAGRFT--------------------PRMSPASP 133
AS+SP S AA +PG +P T + SP SP
Sbjct: 1538 ASYSPNWSPGPAASPGSPGPSSPYMQSPTDITFYVAFQSIILTVESKLLTDFSKYSPTSP 1597
Query: 134 GYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---G 304
Y+ SPR+ + + +Y+P SP Y TSP YSP++P + +SP YSP
Sbjct: 1598 SYSPTSPRY--------SPTSPSYSPTSPRYSPTSPS--YSPTSPRYSPTSPSYSPTSPS 1647
Query: 305 YSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNY 484
YSPTSP R P + SP SP Y PTSP Y+ + YSP+SP+YSP SP+Y
Sbjct: 1648 YSPTSP----RYSPTSPSYSPTSPSYSPTSPKYS------PTSPRYSPTSPSYSPTSPSY 1697
Query: 485 AAASSPAYQPPS 520
+ +SP+Y P S
Sbjct: 1698 -SPTSPSYSPTS 1708
Score = 97.8 bits (242), Expect = 4e-19
Identities = 62/161 (38%), Positives = 85/161 (52%), Gaps = 6/161 (3%)
Frame = +2
Query: 23 SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
SP S + T R +P +P SP SP Y+ SPR+ + + +
Sbjct: 1638 SPSYSPTSPSYSPTSPRYSPTSPSYSPTSPSYSPTSPKYSPTSPRY--------SPTSPS 1689
Query: 203 YAPASPAYMATSPGMGYSPSTPALAVSSPGYSPG---YSPTSPS---VGARGGPAAGYAS 364
Y+P SP+Y TSP YSP++P+ + +SP YSP YSPTSPS R P + S
Sbjct: 1690 YSPTSPSYSPTSPS--YSPTSPSYSPTSPSYSPTSPRYSPTSPSYSPTSPRYSPTSPSYS 1747
Query: 365 PQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYA 487
P SP Y PTSP+Y+ + YSP+SP+YSP SP+Y+
Sbjct: 1748 PTSPRYSPTSPSYS------PTSPSYSPTSPSYSPTSPDYS 1782
Score = 90.1 bits (222), Expect = 8e-17
Identities = 78/217 (35%), Positives = 98/217 (45%), Gaps = 46/217 (21%)
Frame = +2
Query: 14 ASFSPIMSSADAA-------GRATPGR---MTPGR---SPAGRFTPRMSPASPGYAAMSP 154
A SP M+ D++ G TPG MTPG SP+G P SPAS SP
Sbjct: 1488 AGMSPQMTPWDSSLTTPSYEGPYTPGMGGGMTPGAAGFSPSGASEPSFSPAS-----YSP 1542
Query: 155 RFGGGLGGGPAGGAGAYAPASP------------------------------AYMATSPG 244
+ G PA G+ P+SP Y TSP
Sbjct: 1543 NWSPG----PAASPGSPGPSSPYMQSPTDITFYVAFQSIILTVESKLLTDFSKYSPTSPS 1598
Query: 245 MGYSPSTPALAVSSPGYSPG---YSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPG 415
YSP++P + +SP YSP YSPTSPS P + SP SP Y PTSP+Y+
Sbjct: 1599 --YSPTSPRYSPTSPSYSPTSPRYSPTSPSYS----PTSPRYSPTSPSYSPTSPSYS--- 1649
Query: 416 TVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPSRR 526
+ YSP+SP+YSP SP+Y + +SP Y P S R
Sbjct: 1650 ---PTSPRYSPTSPSYSPTSPSY-SPTSPKYSPTSPR 1682
Score = 55.8 bits (133), Expect = 2e-06
Identities = 32/83 (38%), Positives = 46/83 (55%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP +PR SP SP Y+ SPR+ + + +Y+P SP Y TSP YS
Sbjct: 1715 SPSYSPT---SPRYSPTSPSYSPTSPRY--------SPTSPSYSPTSPRYSPTSPS--YS 1761
Query: 257 PSTPALAVSSPGYSPGYSPTSPS 325
P++P+ + +SP YSP SP+
Sbjct: 1762 PTSPSYSPTSPSYSPTSPDYSPN 1784
Score = 54.3 bits (129), Expect = 5e-06
Identities = 33/93 (35%), Positives = 44/93 (47%)
Frame = +2
Query: 23 SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
SP S + T R +P +PR SP SP Y+ SPR
Sbjct: 1708 SPSYSPTSPSYSPTSPRYSPTSPSYSPTSPRYSPTSPSYSPTSPR--------------- 1752
Query: 203 YAPASPAYMATSPGMGYSPSTPALAVSSPGYSP 301
Y+P SP+Y TSP YSP++P+ + +SP YSP
Sbjct: 1753 YSPTSPSYSPTSP--SYSPTSPSYSPTSPDYSP 1783
[107][TOP]
>UniRef100_Q5KGG3 DNA-directed RNA polymerase n=1 Tax=Filobasidiella neoformans
RepID=Q5KGG3_CRYNE
Length = 1786
Score = 104 bits (259), Expect = 4e-21
Identities = 75/195 (38%), Positives = 95/195 (48%), Gaps = 31/195 (15%)
Frame = +2
Query: 17 SFSPIMSSADAA--------GRATPGRMTPGRSPAGR-----------FTPRMSPASPGY 139
++SP A AA GR G +P SP +P SP+SP Y
Sbjct: 1567 AYSPTSPFAGAAAGAASPWVGRGGYGATSPAYSPTSPQYSPTSPQFSPTSPSFSPSSPTY 1626
Query: 140 AAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMG-----YSPSTPALAVSSPGYSP- 301
+ SP +GG G A Y+P SPAY TSP G YSP++P + +SP +SP
Sbjct: 1627 SPASPAYGGA---GAGNRASPYSPTSPAYSPTSPMGGITSPQYSPTSPRYSPTSPAFSPT 1683
Query: 302 --GYSPTSPS----VGARGGPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAY 463
YSPTSP+ R P + SP SP Y P SPAY+ + YSP+SPAY
Sbjct: 1684 SPSYSPTSPAPFQATSPRYSPTSPQFSPTSPTYSPASPAYS------PTSPQYSPTSPAY 1737
Query: 464 SPFSPNYAAASSPAY 508
SP SP Y + +SPAY
Sbjct: 1738 SPTSPAY-SPTSPAY 1751
Score = 102 bits (254), Expect = 2e-20
Identities = 78/197 (39%), Positives = 96/197 (48%), Gaps = 28/197 (14%)
Frame = +2
Query: 14 ASFSPIMSSADAAG----------RATPGRMTPG----RSPAGRF-TPRMSPASPGYAAM 148
A+FSPI SSA+ G G M+P SPAG T + SP Y+
Sbjct: 1512 AAFSPIQSSANDEGGNFAYMGYGQSPMHGGMSPAGYSPSSPAGYSPTSPFAVTSPAYSPT 1571
Query: 149 SPRFGGGLGGG-PAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSPG---YSPT 316
SP G G P G G Y SPAY TSP YSP++P + +SP +SP YSP
Sbjct: 1572 SPFAGAAAGAASPWVGRGGYGATSPAYSPTSPQ--YSPTSPQFSPTSPSFSPSSPTYSPA 1629
Query: 317 SPSVGARG-GPAAGYASPQSPGYVPTSPAYARPGTVVAAANV-YSPSSPAYSPFSPNYA- 487
SP+ G G G A SP SP Y PTSP + + YSP+SPA+SP SP+Y+
Sbjct: 1630 SPAYGGAGAGNRASPYSPTSPAYSPTSPMGGITSPQYSPTSPRYSPTSPAFSPTSPSYSP 1689
Query: 488 ------AASSPAYQPPS 520
A+SP Y P S
Sbjct: 1690 TSPAPFQATSPRYSPTS 1706
Score = 63.9 bits (154), Expect = 6e-09
Identities = 51/151 (33%), Positives = 64/151 (42%), Gaps = 20/151 (13%)
Frame = +2
Query: 23 SPIMSSADAAGRATPGRMTPGR----SPAGRFT--------PRMSPASPGYAAMSPRFGG 166
SP A A RA+P T SP G T PR SP SP ++ SP +
Sbjct: 1630 SPAYGGAGAGNRASPYSPTSPAYSPTSPMGGITSPQYSPTSPRYSPTSPAFSPTSPSYSP 1689
Query: 167 GLGGGPAGGAGAYAPASPAYMATSP-----GMGYSPSTPALAVSSPGY---SPGYSPTSP 322
+ Y+P SP + TSP YSP++P + +SP Y SP YSPTSP
Sbjct: 1690 TSPAPFQATSPRYSPTSPQFSPTSPTYSPASPAYSPTSPQYSPTSPAYSPTSPAYSPTSP 1749
Query: 323 SVGARGGPAAGYASPQSPGYVPTSPAYARPG 415
+ G P G A Q+ ARPG
Sbjct: 1750 AYGG-AAPNGGTAQQQN--------GQARPG 1771
[108][TOP]
>UniRef100_C8Z6G2 Rpo21p n=1 Tax=Saccharomyces cerevisiae EC1118 RepID=C8Z6G2_YEAST
Length = 1733
Score = 104 bits (259), Expect = 4e-21
Identities = 66/170 (38%), Positives = 90/170 (52%), Gaps = 4/170 (2%)
Frame = +2
Query: 23 SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
SP S A T +P +P SP SP Y+ SP + + + +
Sbjct: 1546 SPTYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP-TSPSYSPTSPS 1604
Query: 203 YAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQS 373
Y+P SP+Y TSP YSP++P+ + +SP YSP YSPTSPS P + SP S
Sbjct: 1605 YSPTSPSYSPTSPS--YSPTSPSYSPTSPSYSPTSPSYSPTSPSYS----PTSPSYSPTS 1658
Query: 374 PGYVPTSPAYARPGTVVAAANV-YSPSSPAYSPFSPNYAAASSPAYQPPS 520
P Y PTSP+Y+ + + YSP+SP+YSP SPNY + +SP+Y P S
Sbjct: 1659 PAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNY-SPTSPSYSPTS 1707
Score = 100 bits (249), Expect = 6e-20
Identities = 64/154 (41%), Positives = 85/154 (55%), Gaps = 8/154 (5%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP +P SP SP Y+ SP + + + +Y+P SP+Y TSP YS
Sbjct: 1581 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 1627
Query: 257 PSTPALAVSSPGYSP---GYSPTSPSVGARG---GPAAGYASPQSPGYVPTSPAYA--RP 412
P++P+ + +SP YSP YSPTSPS P + SP SP Y PTSP+Y+ P
Sbjct: 1628 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSP 1687
Query: 413 GTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQP 514
+ N YSP+SP+YSP SP Y + SPAY P
Sbjct: 1688 SYSPTSPN-YSPTSPSYSPTSPGY-SPGSPAYSP 1719
Score = 85.1 bits (209), Expect = 3e-15
Identities = 56/130 (43%), Positives = 72/130 (55%), Gaps = 6/130 (4%)
Frame = +2
Query: 149 SPRFGGGLGGGPAGGAGAYAPASPAYMATSP--GMGYSPSTPALAVSSPGY---SPGYSP 313
SP G AGG AY A ATSP G +P++P VSSPG+ SP YSP
Sbjct: 1493 SPLVDSGSNDAMAGGFTAYGGADYGE-ATSPFGAYGEAPTSPGFGVSSPGFSPTSPTYSP 1551
Query: 314 TSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAA 490
TSP+ P + SP SP Y PTSP+Y+ + + YSP+SP+YSP SP+Y +
Sbjct: 1552 TSPAY----SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-S 1606
Query: 491 ASSPAYQPPS 520
+SP+Y P S
Sbjct: 1607 PTSPSYSPTS 1616
[109][TOP]
>UniRef100_C7GKZ2 Rpo21p n=2 Tax=Saccharomyces cerevisiae RepID=C7GKZ2_YEAS2
Length = 1733
Score = 104 bits (259), Expect = 4e-21
Identities = 66/170 (38%), Positives = 90/170 (52%), Gaps = 4/170 (2%)
Frame = +2
Query: 23 SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
SP S A T +P +P SP SP Y+ SP + + + +
Sbjct: 1546 SPTYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP-TSPSYSPTSPS 1604
Query: 203 YAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQS 373
Y+P SP+Y TSP YSP++P+ + +SP YSP YSPTSPS P + SP S
Sbjct: 1605 YSPTSPSYSPTSPS--YSPTSPSYSPTSPSYSPTSPSYSPTSPSYS----PTSPSYSPTS 1658
Query: 374 PGYVPTSPAYARPGTVVAAANV-YSPSSPAYSPFSPNYAAASSPAYQPPS 520
P Y PTSP+Y+ + + YSP+SP+YSP SPNY + +SP+Y P S
Sbjct: 1659 PAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNY-SPTSPSYSPTS 1707
Score = 100 bits (249), Expect = 6e-20
Identities = 64/154 (41%), Positives = 85/154 (55%), Gaps = 8/154 (5%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP +P SP SP Y+ SP + + + +Y+P SP+Y TSP YS
Sbjct: 1581 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 1627
Query: 257 PSTPALAVSSPGYSP---GYSPTSPSVGARG---GPAAGYASPQSPGYVPTSPAYA--RP 412
P++P+ + +SP YSP YSPTSPS P + SP SP Y PTSP+Y+ P
Sbjct: 1628 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSP 1687
Query: 413 GTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQP 514
+ N YSP+SP+YSP SP Y + SPAY P
Sbjct: 1688 SYSPTSPN-YSPTSPSYSPTSPGY-SPGSPAYSP 1719
Score = 85.1 bits (209), Expect = 3e-15
Identities = 56/130 (43%), Positives = 72/130 (55%), Gaps = 6/130 (4%)
Frame = +2
Query: 149 SPRFGGGLGGGPAGGAGAYAPASPAYMATSP--GMGYSPSTPALAVSSPGY---SPGYSP 313
SP G AGG AY A ATSP G +P++P VSSPG+ SP YSP
Sbjct: 1493 SPLVDSGSNDAMAGGFTAYGGADYGE-ATSPFGAYGEAPTSPGFGVSSPGFSPTSPTYSP 1551
Query: 314 TSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAA 490
TSP+ P + SP SP Y PTSP+Y+ + + YSP+SP+YSP SP+Y +
Sbjct: 1552 TSPAY----SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-S 1606
Query: 491 ASSPAYQPPS 520
+SP+Y P S
Sbjct: 1607 PTSPSYSPTS 1616
[110][TOP]
>UniRef100_C4VAM1 DNA-directed RNA polymerase n=1 Tax=Nosema ceranae BRL01
RepID=C4VAM1_NOSCE
Length = 1612
Score = 104 bits (259), Expect = 4e-21
Identities = 67/172 (38%), Positives = 96/172 (55%), Gaps = 3/172 (1%)
Frame = +2
Query: 14 ASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGG 193
+ +SP +S + G + G +P SP +P SP SP Y+ SP + +
Sbjct: 1435 SKYSPKLSLF-SVGSPSYGSASPSYSPT---SPSYSPTSPSYSPTSPSY--------SPT 1482
Query: 194 AGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYAS 364
+ +Y+P SP+Y TSP YSP++P+ + +SP YSP YSPTSPS P + S
Sbjct: 1483 SPSYSPTSPSYSPTSPS--YSPTSPSYSPTSPSYSPTSPSYSPTSPSYS----PTSPSYS 1536
Query: 365 PQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
P SP Y PTSP+Y+ + YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1537 PTSPSYSPTSPSYS------PTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 1581
Score = 99.8 bits (247), Expect = 1e-19
Identities = 63/174 (36%), Positives = 91/174 (52%), Gaps = 3/174 (1%)
Frame = +2
Query: 8 ATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPA 187
++ ++SP + ++ + G G +P SP SP Y+ SP
Sbjct: 1422 SSGNWSPAYLAEESKYSPKLSLFSVGSPSYGSASPSYSPTSPSYSPTSP----------- 1470
Query: 188 GGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGY 358
+Y+P SP+Y TSP YSP++P+ + +SP YSP YSPTSPS P +
Sbjct: 1471 ----SYSPTSPSYSPTSPS--YSPTSPSYSPTSPSYSPTSPSYSPTSPSYS----PTSPS 1520
Query: 359 ASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
SP SP Y PTSP+Y+ + YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1521 YSPTSPSYSPTSPSYS------PTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 1567
Score = 83.6 bits (205), Expect = 8e-15
Identities = 53/134 (39%), Positives = 72/134 (53%), Gaps = 3/134 (2%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP +P SP SP Y+ SP + + + +Y+P SP+Y TSP YS
Sbjct: 1490 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 1536
Query: 257 PSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVA 427
P++P+ + +SP YSP YSPTSPS SP SP Y PTSP+Y+
Sbjct: 1537 PTSPSYSPTSPSYSPTSPSYSPTSPSY-----------SPTSPSYSPTSPSYS------P 1579
Query: 428 AANVYSPSSPAYSP 469
+ YSP+SP+YSP
Sbjct: 1580 TSLSYSPTSPSYSP 1593
Score = 73.9 bits (180), Expect = 6e-12
Identities = 46/116 (39%), Positives = 63/116 (54%), Gaps = 3/116 (2%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP +P SP SP Y+ SP + + + +Y+P SP+Y TSP YS
Sbjct: 1497 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 1543
Query: 257 PSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPG 415
P++P+ + +SP YSP YSPTSPS P + SP S Y PTSP+Y+ G
Sbjct: 1544 PTSPSYSPTSPSYSPTSPSYSPTSPSYS----PTSPSYSPTSLSYSPTSPSYSPTG 1595
Score = 60.8 bits (146), Expect = 5e-08
Identities = 40/96 (41%), Positives = 57/96 (59%), Gaps = 6/96 (6%)
Frame = +2
Query: 251 YSPSTPALAVSSPGYSPGY----SPTSP--SVGARGGPAAGYASPQSPGYVPTSPAYARP 412
YSP + + ++SS +SP Y S SP S+ + G P+ G ASP Y PTSP+Y+
Sbjct: 1412 YSPVSESQSISSGNWSPAYLAEESKYSPKLSLFSVGSPSYGSASPS---YSPTSPSYS-- 1466
Query: 413 GTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
+ YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1467 ----PTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 1497
[111][TOP]
>UniRef100_B3LH31 DNA-directed RNA polymerase n=1 Tax=Saccharomyces cerevisiae RM11-1a
RepID=B3LH31_YEAS1
Length = 1733
Score = 104 bits (259), Expect = 4e-21
Identities = 66/170 (38%), Positives = 90/170 (52%), Gaps = 4/170 (2%)
Frame = +2
Query: 23 SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
SP S A T +P +P SP SP Y+ SP + + + +
Sbjct: 1546 SPTYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP-TSPSYSPTSPS 1604
Query: 203 YAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQS 373
Y+P SP+Y TSP YSP++P+ + +SP YSP YSPTSPS P + SP S
Sbjct: 1605 YSPTSPSYSPTSPS--YSPTSPSYSPTSPSYSPTSPSYSPTSPSYS----PTSPSYSPTS 1658
Query: 374 PGYVPTSPAYARPGTVVAAANV-YSPSSPAYSPFSPNYAAASSPAYQPPS 520
P Y PTSP+Y+ + + YSP+SP+YSP SPNY + +SP+Y P S
Sbjct: 1659 PAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNY-SPTSPSYSPTS 1707
Score = 100 bits (249), Expect = 6e-20
Identities = 64/154 (41%), Positives = 85/154 (55%), Gaps = 8/154 (5%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP +P SP SP Y+ SP + + + +Y+P SP+Y TSP YS
Sbjct: 1581 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 1627
Query: 257 PSTPALAVSSPGYSP---GYSPTSPSVGARG---GPAAGYASPQSPGYVPTSPAYA--RP 412
P++P+ + +SP YSP YSPTSPS P + SP SP Y PTSP+Y+ P
Sbjct: 1628 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSP 1687
Query: 413 GTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQP 514
+ N YSP+SP+YSP SP Y + SPAY P
Sbjct: 1688 SYSPTSPN-YSPTSPSYSPTSPGY-SPGSPAYSP 1719
Score = 84.3 bits (207), Expect = 5e-15
Identities = 56/130 (43%), Positives = 71/130 (54%), Gaps = 6/130 (4%)
Frame = +2
Query: 149 SPRFGGGLGGGPAGGAGAYAPASPAYMATSP--GMGYSPSTPALAVSSPGY---SPGYSP 313
SP G AGG AY A ATSP G P++P VSSPG+ SP YSP
Sbjct: 1493 SPLVDSGSNDAMAGGFTAYGGADYGE-ATSPFGAYGEPPTSPGFGVSSPGFSPTSPTYSP 1551
Query: 314 TSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAA 490
TSP+ P + SP SP Y PTSP+Y+ + + YSP+SP+YSP SP+Y +
Sbjct: 1552 TSPAY----SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-S 1606
Query: 491 ASSPAYQPPS 520
+SP+Y P S
Sbjct: 1607 PTSPSYSPTS 1616
[112][TOP]
>UniRef100_A8Q5I6 DNA-directed RNA polymerase n=1 Tax=Malassezia globosa CBS 7966
RepID=A8Q5I6_MALGO
Length = 1607
Score = 104 bits (259), Expect = 4e-21
Identities = 70/174 (40%), Positives = 91/174 (52%), Gaps = 8/174 (4%)
Frame = +2
Query: 23 SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAG---G 193
SP++ +++A T RM+P +P SP SP Y+ SP++ GP G G
Sbjct: 1415 SPVIDASNARSTYT-SRMSPASPNYSPTSPVYSPTSPAYSPTSPQYSPTSPAGPRGRRLG 1473
Query: 194 AGA--YAPASPAYMATSPGMGYSPSTPALAVSSPGYSPG---YSPTSPSVGARGGPAAGY 358
A Y+P SP Y TSP YSP++P + +SP YSP YSPTSP P +
Sbjct: 1474 ASGPKYSPTSPQYSPTSPQ--YSPTSPQYSPTSPQYSPTSPQYSPTSPQYS----PTSPQ 1527
Query: 359 ASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
SP SP Y PTSP Y+ + YSP+SP YSP SP Y + +SP Y P S
Sbjct: 1528 YSPTSPQYSPTSPQYS------PTSPQYSPTSPQYSPTSPQY-SPTSPQYSPTS 1574
Score = 97.4 bits (241), Expect = 5e-19
Identities = 73/203 (35%), Positives = 93/203 (45%), Gaps = 30/203 (14%)
Frame = +2
Query: 2 INATASFSPIMS---SADAAGRATPGRMTPGRSPAGRFTPR--MSPASPGYAAMSPRFGG 166
+ ASFSP++ G +P R+P G +P +P SPGY SP +
Sbjct: 1307 VQQQASFSPLVQVGGDEGGYGEYLSAGQSPMRTPLGAQSPGYGFAPTSPGYVPTSPAYNA 1366
Query: 167 ---GLGG-----GPAGGAG-AYAPASPAYMATSPGMGYSPSTPALAVSSPGY-------- 295
LG G AG AY+P SP A + YSP++P+ + SSP
Sbjct: 1367 TSPALGAMSPWVGAAGATSPAYSPTSPRIFAGATSPSYSPTSPSYSPSSPVIDASNARST 1426
Query: 296 --------SPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPS 451
SP YSPTSP P + SP SP Y PTSPA R + A+ YSP+
Sbjct: 1427 YTSRMSPASPNYSPTSPVYS----PTSPAYSPTSPQYSPTSPAGPRGRRLGASGPKYSPT 1482
Query: 452 SPAYSPFSPNYAAASSPAYQPPS 520
SP YSP SP Y + +SP Y P S
Sbjct: 1483 SPQYSPTSPQY-SPTSPQYSPTS 1504
Score = 93.2 bits (230), Expect = 1e-17
Identities = 71/175 (40%), Positives = 88/175 (50%), Gaps = 3/175 (1%)
Frame = +2
Query: 5 NATASFSPIMSS-ADAAGRATPGRM-TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGG 178
NAT+ MS AAG +P T R AG +P SP SP Y+ SP
Sbjct: 1365 NATSPALGAMSPWVGAAGATSPAYSPTSPRIFAGATSPSYSPTSPSYSPSSPVIDAS--N 1422
Query: 179 GPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSPGYSPTSPSVGARGGPAAGY 358
+ +PASP Y TSP YSP++PA + +SP YSP SP P G R G +
Sbjct: 1423 ARSTYTSRMSPASPNYSPTSPV--YSPTSPAYSPTSPQYSPT-SPAGPR-GRRLGASGPK 1478
Query: 359 ASPQSPGYVPTSPAYARPGTVVAAANV-YSPSSPAYSPFSPNYAAASSPAYQPPS 520
SP SP Y PTSP Y+ + + YSP+SP YSP SP Y + +SP Y P S
Sbjct: 1479 YSPTSPQYSPTSPQYSPTSPQYSPTSPQYSPTSPQYSPTSPQY-SPTSPQYSPTS 1532
Score = 87.8 bits (216), Expect = 4e-16
Identities = 68/189 (35%), Positives = 86/189 (45%), Gaps = 23/189 (12%)
Frame = +2
Query: 23 SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
S + +D G TPG MTP S + A+ SP GG GG G
Sbjct: 1274 SKLGMDSDDLGARTPGGMTPYDSGSPNIDDDFRVQQ--QASFSPLV---QVGGDEGGYGE 1328
Query: 203 YAPASPAYMAT-----SPGMGYSPSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGY 358
Y A + M T SPG G++P++P +SP Y SP SP VGA G + Y
Sbjct: 1329 YLSAGQSPMRTPLGAQSPGYGFAPTSPGYVPTSPAYNATSPALGAMSPWVGAAGATSPAY 1388
Query: 359 --------ASPQSPGYVPTSPAYARPGTVVAAANV-------YSPSSPAYSPFSPNYAAA 493
A SP Y PTSP+Y+ V+ A+N SP+SP YSP SP Y +
Sbjct: 1389 SPTSPRIFAGATSPSYSPTSPSYSPSSPVIDASNARSTYTSRMSPASPNYSPTSPVY-SP 1447
Query: 494 SSPAYQPPS 520
+SPAY P S
Sbjct: 1448 TSPAYSPTS 1456
Score = 57.0 bits (136), Expect = 8e-07
Identities = 38/116 (32%), Positives = 54/116 (46%)
Frame = +2
Query: 23 SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
SP S T + +P +P+ SP SP Y+ SP++ + +
Sbjct: 1490 SPQYSPTSPQYSPTSPQYSPTSPQYSPTSPQYSPTSPQYSPTSPQY--------SPTSPQ 1541
Query: 203 YAPASPAYMATSPGMGYSPSTPALAVSSPGYSPGYSPTSPSVGARGGPAAGYASPQ 370
Y+P SP Y TSP YSP++P + +SP YSP SPS A+G ASP+
Sbjct: 1542 YSPTSPQYSPTSPQ--YSPTSPQYSPTSPQYSPTSPQYSPSGNVGASAASGAASPR 1595
[113][TOP]
>UniRef100_P04050 DNA-directed RNA polymerase II subunit RPB1 n=2 Tax=Saccharomyces
cerevisiae RepID=RPB1_YEAST
Length = 1733
Score = 104 bits (259), Expect = 4e-21
Identities = 66/170 (38%), Positives = 90/170 (52%), Gaps = 4/170 (2%)
Frame = +2
Query: 23 SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
SP S A T +P +P SP SP Y+ SP + + + +
Sbjct: 1546 SPTYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP-TSPSYSPTSPS 1604
Query: 203 YAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQS 373
Y+P SP+Y TSP YSP++P+ + +SP YSP YSPTSPS P + SP S
Sbjct: 1605 YSPTSPSYSPTSPS--YSPTSPSYSPTSPSYSPTSPSYSPTSPSYS----PTSPSYSPTS 1658
Query: 374 PGYVPTSPAYARPGTVVAAANV-YSPSSPAYSPFSPNYAAASSPAYQPPS 520
P Y PTSP+Y+ + + YSP+SP+YSP SPNY + +SP+Y P S
Sbjct: 1659 PAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNY-SPTSPSYSPTS 1707
Score = 100 bits (249), Expect = 6e-20
Identities = 64/154 (41%), Positives = 85/154 (55%), Gaps = 8/154 (5%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP +P SP SP Y+ SP + + + +Y+P SP+Y TSP YS
Sbjct: 1581 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 1627
Query: 257 PSTPALAVSSPGYSP---GYSPTSPSVGARG---GPAAGYASPQSPGYVPTSPAYA--RP 412
P++P+ + +SP YSP YSPTSPS P + SP SP Y PTSP+Y+ P
Sbjct: 1628 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSP 1687
Query: 413 GTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQP 514
+ N YSP+SP+YSP SP Y + SPAY P
Sbjct: 1688 SYSPTSPN-YSPTSPSYSPTSPGY-SPGSPAYSP 1719
Score = 85.1 bits (209), Expect = 3e-15
Identities = 56/130 (43%), Positives = 72/130 (55%), Gaps = 6/130 (4%)
Frame = +2
Query: 149 SPRFGGGLGGGPAGGAGAYAPASPAYMATSP--GMGYSPSTPALAVSSPGY---SPGYSP 313
SP G AGG AY A ATSP G +P++P VSSPG+ SP YSP
Sbjct: 1493 SPLVDSGSNDAMAGGFTAYGGADYGE-ATSPFGAYGEAPTSPGFGVSSPGFSPTSPTYSP 1551
Query: 314 TSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAA 490
TSP+ P + SP SP Y PTSP+Y+ + + YSP+SP+YSP SP+Y +
Sbjct: 1552 TSPAY----SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-S 1606
Query: 491 ASSPAYQPPS 520
+SP+Y P S
Sbjct: 1607 PTSPSYSPTS 1616
[114][TOP]
>UniRef100_UPI0000E12351 Os05g0151000 n=1 Tax=Oryza sativa Japonica Group RepID=UPI0000E12351
Length = 2085
Score = 103 bits (258), Expect = 6e-21
Identities = 65/182 (35%), Positives = 86/182 (47%), Gaps = 16/182 (8%)
Frame = +2
Query: 23 SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGG---GPAGG 193
SPI S + T +P + SP SP Y SP + P
Sbjct: 1622 SPIYSPTSLSYSPTSPVYSPTSPVYNPTSSAYSPTSPSYNPTSPSYSYSPTSPSYSPTSP 1681
Query: 194 AGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP----------GYSPTSPSVGARGG 343
+ +Y+P SP+Y TSP YSP++P+ + +SP YSP YSPTSPS
Sbjct: 1682 SYSYSPTSPSYSPTSPSYNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSS 1741
Query: 344 ---PAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQP 514
P + SP SPGY PTSP+Y+ ++V S AYSP SPNY +++SP Y P
Sbjct: 1742 AYSPTSPAYSPTSPGYSPTSPSYSPSSPSYNPSSVKYTPSHAYSPSSPNYYSSTSPTYSP 1801
Query: 515 PS 520
S
Sbjct: 1802 TS 1803
Score = 94.7 bits (234), Expect = 3e-18
Identities = 78/245 (31%), Positives = 103/245 (42%), Gaps = 74/245 (30%)
Frame = +2
Query: 8 ATASFSPIMSSADAAGRATPGRMTP----GRSPA--------GRFTPRM----------- 118
A A FSP + + ++PG TP G SP+ G FT
Sbjct: 1525 ADAQFSPYVGGMAFSPVSSPGNYTPSSGGGYSPSPPVCTPGPGSFTSSSPYNPVSPFYSP 1584
Query: 119 --------------------SPASPGYAAMSPRFG--------GGLGGGPAG-------- 190
SP SP Y+A SP + L P
Sbjct: 1585 ASPLSCPLTSPSYVPTSLPHSPTSPIYSATSPIYSPSSPIYSPTSLSYSPTSPVYSPTSP 1644
Query: 191 ----GAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY-----SPGYSPTSPS-----V 328
+ AY+P SP+Y TSP YSP++P+ + +SP Y SP YSPTSPS
Sbjct: 1645 VYNPTSSAYSPTSPSYNPTSPSYSYSPTSPSYSPTSPSYSYSPTSPSYSPTSPSYNYSPT 1704
Query: 329 GARGGPAAGYASPQSPGYVPTSPAYARPG-TVVAAANVYSPSSPAYSPFSPNYAAASSPA 505
P + SP SP Y PTSP+Y+ + ++ YSP+SPAYSP SP Y + +SP+
Sbjct: 1705 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSSAYSPTSPAYSPTSPGY-SPTSPS 1763
Query: 506 YQPPS 520
Y P S
Sbjct: 1764 YSPSS 1768
Score = 77.8 bits (190), Expect = 4e-13
Identities = 50/131 (38%), Positives = 68/131 (51%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP +P SP SP Y+ SP + + + AY+P SPAY TSPG YS
Sbjct: 1712 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSSAYSPTSPAYSPTSPG--YS 1758
Query: 257 PSTPALAVSSPGYSPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVAAAN 436
P++P+ + SSP Y+P +PS A + Y S SP Y PTSP+Y++P
Sbjct: 1759 PTSPSYSPSSPSYNPSSVKYTPS-HAYSPSSPNYYSSTSPTYSPTSPSYSQP-------- 1809
Query: 437 VYSPSSPAYSP 469
SP+YSP
Sbjct: 1810 -----SPSYSP 1815
Score = 69.7 bits (169), Expect = 1e-10
Identities = 58/176 (32%), Positives = 79/176 (44%), Gaps = 6/176 (3%)
Frame = +2
Query: 11 TASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAG 190
T++ SPI + G +P + SP R +P + A SP + GG+ P
Sbjct: 1492 TSACSPISGTPYHQGMMSPSYLL---SPDIRASPTAADAQ-----FSP-YVGGMAFSPVS 1542
Query: 191 GAGAYAPAS-----PAYMATSPGMGYSPSTPALAVSSPGYSPGYSPTSPSVGARGGPAAG 355
G Y P+S P+ +PG G S+ SP YSP + P P +
Sbjct: 1543 SPGNYTPSSGGGYSPSPPVCTPGPGSFTSSSPYNPVSPFYSPASPLSCPLTSPSYVPTSL 1602
Query: 356 YASPQSPGYVPTSPAYARPGTVVAAANV-YSPSSPAYSPFSPNYAAASSPAYQPPS 520
SP SP Y TSP Y+ + + ++ YSP+SP YSP SP Y SS AY P S
Sbjct: 1603 PHSPTSPIYSATSPIYSPSSPIYSPTSLSYSPTSPVYSPTSPVYNPTSS-AYSPTS 1657
[115][TOP]
>UniRef100_Q0DKN9 DNA-directed RNA polymerase n=1 Tax=Oryza sativa Japonica Group
RepID=Q0DKN9_ORYSJ
Length = 1834
Score = 103 bits (258), Expect = 6e-21
Identities = 65/182 (35%), Positives = 86/182 (47%), Gaps = 16/182 (8%)
Frame = +2
Query: 23 SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGG---GPAGG 193
SPI S + T +P + SP SP Y SP + P
Sbjct: 1622 SPIYSPTSLSYSPTSPVYSPTSPVYNPTSSAYSPTSPSYNPTSPSYSYSPTSPSYSPTSP 1681
Query: 194 AGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP----------GYSPTSPSVGARGG 343
+ +Y+P SP+Y TSP YSP++P+ + +SP YSP YSPTSPS
Sbjct: 1682 SYSYSPTSPSYSPTSPSYNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSS 1741
Query: 344 ---PAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQP 514
P + SP SPGY PTSP+Y+ ++V S AYSP SPNY +++SP Y P
Sbjct: 1742 AYSPTSPAYSPTSPGYSPTSPSYSPSSPSYNPSSVKYTPSHAYSPSSPNYYSSTSPTYSP 1801
Query: 515 PS 520
S
Sbjct: 1802 TS 1803
Score = 94.7 bits (234), Expect = 3e-18
Identities = 78/245 (31%), Positives = 103/245 (42%), Gaps = 74/245 (30%)
Frame = +2
Query: 8 ATASFSPIMSSADAAGRATPGRMTP----GRSPA--------GRFTPRM----------- 118
A A FSP + + ++PG TP G SP+ G FT
Sbjct: 1525 ADAQFSPYVGGMAFSPVSSPGNYTPSSGGGYSPSPPVCTPGPGSFTSSSPYNPVSPFYSP 1584
Query: 119 --------------------SPASPGYAAMSPRFG--------GGLGGGPAG-------- 190
SP SP Y+A SP + L P
Sbjct: 1585 ASPLSCPLTSPSYVPTSLPHSPTSPIYSATSPIYSPSSPIYSPTSLSYSPTSPVYSPTSP 1644
Query: 191 ----GAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY-----SPGYSPTSPS-----V 328
+ AY+P SP+Y TSP YSP++P+ + +SP Y SP YSPTSPS
Sbjct: 1645 VYNPTSSAYSPTSPSYNPTSPSYSYSPTSPSYSPTSPSYSYSPTSPSYSPTSPSYNYSPT 1704
Query: 329 GARGGPAAGYASPQSPGYVPTSPAYARPG-TVVAAANVYSPSSPAYSPFSPNYAAASSPA 505
P + SP SP Y PTSP+Y+ + ++ YSP+SPAYSP SP Y + +SP+
Sbjct: 1705 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSSAYSPTSPAYSPTSPGY-SPTSPS 1763
Query: 506 YQPPS 520
Y P S
Sbjct: 1764 YSPSS 1768
Score = 79.0 bits (193), Expect = 2e-13
Identities = 54/150 (36%), Positives = 74/150 (49%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP +P SP SP Y+ SP + + + AY+P SPAY TSPG YS
Sbjct: 1712 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSSAYSPTSPAYSPTSPG--YS 1758
Query: 257 PSTPALAVSSPGYSPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVAAAN 436
P++P+ + SSP Y+P +PS A + Y S SP Y PTSP+Y++P
Sbjct: 1759 PTSPSYSPSSPSYNPSSVKYTPS-HAYSPSSPNYYSSTSPTYSPTSPSYSQP-------- 1809
Query: 437 VYSPSSPAYSPFSPNYAAASSPAYQPPSRR 526
SP+YSP S A A + +R
Sbjct: 1810 -----SPSYSPTSRVEEEAHEEAEEEEPKR 1834
Score = 69.7 bits (169), Expect = 1e-10
Identities = 58/176 (32%), Positives = 79/176 (44%), Gaps = 6/176 (3%)
Frame = +2
Query: 11 TASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAG 190
T++ SPI + G +P + SP R +P + A SP + GG+ P
Sbjct: 1492 TSACSPISGTPYHQGMMSPSYLL---SPDIRASPTAADAQ-----FSP-YVGGMAFSPVS 1542
Query: 191 GAGAYAPAS-----PAYMATSPGMGYSPSTPALAVSSPGYSPGYSPTSPSVGARGGPAAG 355
G Y P+S P+ +PG G S+ SP YSP + P P +
Sbjct: 1543 SPGNYTPSSGGGYSPSPPVCTPGPGSFTSSSPYNPVSPFYSPASPLSCPLTSPSYVPTSL 1602
Query: 356 YASPQSPGYVPTSPAYARPGTVVAAANV-YSPSSPAYSPFSPNYAAASSPAYQPPS 520
SP SP Y TSP Y+ + + ++ YSP+SP YSP SP Y SS AY P S
Sbjct: 1603 PHSPTSPIYSATSPIYSPSSPIYSPTSLSYSPTSPVYSPTSPVYNPTSS-AYSPTS 1657
[116][TOP]
>UniRef100_C5LSN8 P35 antigen, putative (Fragment) n=1 Tax=Perkinsus marinus ATCC
50983 RepID=C5LSN8_9ALVE
Length = 170
Score = 103 bits (258), Expect = 6e-21
Identities = 66/150 (44%), Positives = 84/150 (56%), Gaps = 3/150 (2%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP +P SP SP Y+ SP + + + AY+P SPAY TSP YS
Sbjct: 19 SPAYSPT---SPAYSPTSPAYSPTSPAY--------SPTSPAYSPTSPAYSPTSPA--YS 65
Query: 257 PSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVA 427
P++PA + +SP YSP YSPTSP+ P + SP SP Y PTSPAY+
Sbjct: 66 PTSPAYSPTSPAYSPTSPAYSPTSPAYS----PTSPAYSPTSPSYSPTSPAYS------P 115
Query: 428 AANVYSPSSPAYSPFSPNYAAASSPAYQPP 517
+ YSP+SPAYSP SP Y + +SPAY P
Sbjct: 116 TSPAYSPTSPAYSPTSPAY-SPTSPAYYHP 144
Score = 97.8 bits (242), Expect = 4e-19
Identities = 56/114 (49%), Positives = 70/114 (61%), Gaps = 7/114 (6%)
Frame = +2
Query: 200 AYAPASPAYMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPSVGARG---GPAAGYA 361
AY+P SPAY TSP YSP++PA + +SP Y SP YSPTSP+ P +
Sbjct: 7 AYSPTSPAYSPTSP--AYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAY 64
Query: 362 SPQSPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
SP SP Y PTSPAY+ + + YSP+SPAYSP SP+Y + +SPAY P S
Sbjct: 65 SPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPSY-SPTSPAYSPTS 117
Score = 95.5 bits (236), Expect = 2e-18
Identities = 55/110 (50%), Positives = 68/110 (61%), Gaps = 4/110 (3%)
Frame = +2
Query: 203 YAPASPAYMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYASPQS 373
Y+P SPAY TSP YSP++PA + +SP Y SP YSPTSP+ P + SP S
Sbjct: 1 YSPTSPAYSPTSP--AYSPTSPAYSPTSPAYSPTSPAYSPTSPAY----SPTSPAYSPTS 54
Query: 374 PGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
P Y PTSPAY+ + + YSP+SPAYSP SP Y + +SPAY P S
Sbjct: 55 PAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAY-SPTSPAYSPTS 103
Score = 95.5 bits (236), Expect = 2e-18
Identities = 66/163 (40%), Positives = 81/163 (49%), Gaps = 10/163 (6%)
Frame = +2
Query: 23 SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
SP S A T +P +P SP SP Y+ SP + + + A
Sbjct: 26 SPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAY--------SPTSPA 77
Query: 203 YAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQS 373
Y+P SPAY TSP YSP++PA + +SP YSP YSPTSP+ P + SP S
Sbjct: 78 YSPTSPAYSPTSPA--YSPTSPAYSPTSPSYSPTSPAYSPTSPAYS----PTSPAYSPTS 131
Query: 374 PGYVPTSPAYARP-------GTVVAAANVYSPSSPAYSPFSPN 481
P Y PTSPAY P G VV YSP+SPAYS SP+
Sbjct: 132 PAYSPTSPAYYHPLVTSSDEGPVVR----YSPTSPAYSNTSPS 170
[117][TOP]
>UniRef100_Q4P7Q0 DNA-directed RNA polymerase n=1 Tax=Ustilago maydis
RepID=Q4P7Q0_USTMA
Length = 1774
Score = 103 bits (258), Expect = 6e-21
Identities = 76/181 (41%), Positives = 95/181 (52%), Gaps = 14/181 (7%)
Frame = +2
Query: 20 FSPIMSS--ADAAGRAT-PGRMTPGRSPAGRFTPRMSPASPGYAAMSPR-FGGGLGGGPA 187
FSP+ + G AT P G SP +T M SP Y+ SPR FGG +
Sbjct: 1555 FSPVSPGYVPTSPGYATSPAGALGGMSP---WTGNMGATSPAYSPTSPRIFGGATSPSYS 1611
Query: 188 GGAGAYAPASPAYMATSP-GMGYSPSTPAL---AVSSPGYSPG---YSPTSPSVGARGGP 346
+ +Y+PASP Y +SP G GYSPS+PA A +SP YSP +SPTSP+
Sbjct: 1612 PTSPSYSPASPNYSPSSPAGAGYSPSSPAGRYGAATSPQYSPASPKFSPTSPNY------ 1665
Query: 347 AAGYASPQSPGYVPTSPAYARPGTVVA---AANVYSPSSPAYSPFSPNYAAASSPAYQPP 517
SP SP Y PTSP Y+ +A +SP+SPAYSP SP Y+ A SPA+ P
Sbjct: 1666 -----SPASPAYTPTSPVYSPTSPAMAGRGGGKGFSPTSPAYSPTSPQYSPA-SPAFSPT 1719
Query: 518 S 520
S
Sbjct: 1720 S 1720
Score = 103 bits (257), Expect = 7e-21
Identities = 70/156 (44%), Positives = 84/156 (53%), Gaps = 5/156 (3%)
Frame = +2
Query: 68 GRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA-----YAPASPAYMA 232
G +P SP +P SPASP Y+ SP G PAG GA Y+PASP +
Sbjct: 1604 GATSPSYSPT---SPSYSPASPNYSPSSPAGAGYSPSSPAGRYGAATSPQYSPASPKFSP 1660
Query: 233 TSPGMGYSPSTPALAVSSPGYSPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARP 412
TSP YSP++PA +SP YSP TSP++ RGG G+ SP SP Y PTSP Y
Sbjct: 1661 TSPN--YSPASPAYTPTSPVYSP----TSPAMAGRGG-GKGF-SPTSPAYSPTSPQY--- 1709
Query: 413 GTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
SP+SPA+SP SP Y+ A SP Y P S
Sbjct: 1710 ----------SPASPAFSPTSPQYSPA-SPQYSPTS 1734
Score = 95.9 bits (237), Expect = 2e-18
Identities = 74/182 (40%), Positives = 94/182 (51%), Gaps = 9/182 (4%)
Frame = +2
Query: 2 INATASFSPIMSSADAAGRATPGRMT---PGRSPAGRFTPR---MSPASPGYAAMSPRFG 163
++ A FSP+ + G ++ P R+P G +P SP SPGY SP
Sbjct: 1511 VHEQAMFSPLAQTGGDEGGYNDYLLSGTSPMRTPLGAQSPAGYGFSPVSPGYVPTSP--- 1567
Query: 164 GGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSPGYSPTSPSVGARGG 343
G PAG G +P + ATSP YSP++P + + SP YSPTSPS
Sbjct: 1568 -GYATSPAGALGGMSPWTGNMGATSPA--YSPTSPRIFGGAT--SPSYSPTSPSYS---- 1618
Query: 344 PAAGYASPQSP---GYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQP 514
PA+ SP SP GY P+SPA R G A + YSP+SP +SP SPNY+ A SPAY P
Sbjct: 1619 PASPNYSPSSPAGAGYSPSSPA-GRYGA--ATSPQYSPASPKFSPTSPNYSPA-SPAYTP 1674
Query: 515 PS 520
S
Sbjct: 1675 TS 1676
Score = 81.6 bits (200), Expect = 3e-14
Identities = 59/147 (40%), Positives = 77/147 (52%), Gaps = 14/147 (9%)
Frame = +2
Query: 17 SFSPIMSSADAAGRATPGRMTPGRSPAGRF----TPRMSPASPGYAAMSPRFGGGLGGGP 184
S+SP + + A G +P SPAGR+ +P+ SPASP ++ SP + P
Sbjct: 1616 SYSPASPNYSPSSPAGAG-YSPS-SPAGRYGAATSPQYSPASPKFSPTSPNYS------P 1667
Query: 185 AGGAGAYAPASPAYMATSPGM-------GYSPSTPALAVSSPGY---SPGYSPTSPSVGA 334
A + AY P SP Y TSP M G+SP++PA + +SP Y SP +SPTSP
Sbjct: 1668 A--SPAYTPTSPVYSPTSPAMAGRGGGKGFSPTSPAYSPTSPQYSPASPAFSPTSPQY-- 1723
Query: 335 RGGPAAGYASPQSPGYVPTSPAYARPG 415
PA+ SP SP Y PTSPA G
Sbjct: 1724 --SPASPQYSPTSPQYSPTSPAMGMGG 1748
Score = 79.0 bits (193), Expect = 2e-13
Identities = 72/174 (41%), Positives = 84/174 (48%), Gaps = 13/174 (7%)
Frame = +2
Query: 38 SADAAGRATPGRMTP--GRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAP 211
S DAAG TPG MTP SPA R+ A SP GG GG Y
Sbjct: 1483 SLDAAGGKTPGAMTPYDSSSPASDDAFRVHEQ----AMFSPL---AQTGGDEGGYNDYLL 1535
Query: 212 ASPAYMAT-----SP-GMGYSPSTPALAVSSPGYSPGYSPTSPSVGARGG--PAAGYASP 367
+ + M T SP G G+SP +P +SPGY+ TSP+ GA GG P G
Sbjct: 1536 SGTSPMRTPLGAQSPAGYGFSPVSPGYVPTSPGYA-----TSPA-GALGGMSPWTGNMGA 1589
Query: 368 QSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPA---YQPPS 520
SP Y PTSP T + YSP+SP+YSP SPNY + SSPA Y P S
Sbjct: 1590 TSPAYSPTSPRIFGGAT----SPSYSPTSPSYSPASPNY-SPSSPAGAGYSPSS 1638
Score = 75.5 bits (184), Expect = 2e-12
Identities = 54/135 (40%), Positives = 68/135 (50%), Gaps = 16/135 (11%)
Frame = +2
Query: 8 ATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFG--GGLGGG 181
A A +SP S A G AT + +P +P SPASP Y SP + G
Sbjct: 1630 AGAGYSP-SSPAGRYGAATSPQYSPASPKFSPTSPNYSPASPAYTPTSPVYSPTSPAMAG 1688
Query: 182 PAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSPG----------YSPTSPSVG 331
GG G ++P SPAY TSP YSP++PA + +SP YSP YSPTSP++G
Sbjct: 1689 RGGGKG-FSPTSPAYSPTSPQ--YSPASPAFSPTSPQYSPASPQYSPTSPQYSPTSPAMG 1745
Query: 332 ----ARGGPAAGYAS 364
+ GGP A AS
Sbjct: 1746 MGGASAGGPGAAAAS 1760
[118][TOP]
>UniRef100_A1CNZ4 DNA-directed RNA polymerase n=1 Tax=Aspergillus clavatus
RepID=A1CNZ4_ASPCL
Length = 1765
Score = 103 bits (258), Expect = 6e-21
Identities = 71/183 (38%), Positives = 96/183 (52%), Gaps = 14/183 (7%)
Frame = +2
Query: 11 TASFSPIMSSADAAG-RATPGRMT-PGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGP 184
T S+SPI + +PG MT PG SP +P +P SP Y+ SP +G P
Sbjct: 1586 TTSYSPIAPGITSPRFNTSPGFMTSPGFSPV---SPSFAPTSPAYSPTSPAYGQASPTSP 1642
Query: 185 AGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARG----- 340
+ Y+P SP + TSP YSP++P+ + +SP +SP YSPTSP++G G
Sbjct: 1643 S-----YSPTSPGFSPTSPN--YSPTSPSFSPASPAFSPTSPSYSPTSPAIGGAGRHLSP 1695
Query: 341 -GPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYS---PSSPAYSPFSPNYAAASSPAY 508
P + +P SPG+ PTSP P + A + S P+SP YSP SP A SP+Y
Sbjct: 1696 TSPTSPKYTPTSPGWSPTSPQTYSPTSPNFAGSPTSPGGPTSPGYSPTSP----AFSPSY 1751
Query: 509 QPP 517
PP
Sbjct: 1752 VPP 1754
Score = 89.7 bits (221), Expect = 1e-16
Identities = 66/176 (37%), Positives = 87/176 (49%), Gaps = 9/176 (5%)
Frame = +2
Query: 20 FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAG 199
FSP +S +P P SP T SP +PG SPRF G + G
Sbjct: 1558 FSPAATSPAGYSPTSPFSANP-TSPGYSPTTSYSPIAPGIT--SPRFNTSPGFMTSPG-- 1612
Query: 200 AYAPASPAYMATSPGMGYSPSTPAL---AVSSPGYSP---GYSPTSPSVGARG---GPAA 352
++P SP++ TSP YSP++PA + +SP YSP G+SPTSP+ PA+
Sbjct: 1613 -FSPVSPSFAPTSPA--YSPTSPAYGQASPTSPSYSPTSPGFSPTSPNYSPTSPSFSPAS 1669
Query: 353 GYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
SP SP Y PTSPA G ++ SP+SP Y+P SP ++ S Y P S
Sbjct: 1670 PAFSPTSPSYSPTSPAIGGAGRHLSPT---SPTSPKYTPTSPGWSPTSPQTYSPTS 1722
Score = 82.0 bits (201), Expect = 2e-14
Identities = 65/187 (34%), Positives = 85/187 (45%), Gaps = 18/187 (9%)
Frame = +2
Query: 14 ASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGG 193
++FSPI AG TPG T + G FGGG
Sbjct: 1529 SAFSPI----GQAGAETPGGFTEYQPTGG-------------------FGGGFSPAATSP 1565
Query: 194 AGAYAPASPAYMATSPGMGYSPSTPALAV----------SSPGY--SPGYSPTSPSVGAR 337
AG Y+P SP + A GYSP+T + +SPG+ SPG+SP SPS
Sbjct: 1566 AG-YSPTSP-FSANPTSPGYSPTTSYSPIAPGITSPRFNTSPGFMTSPGFSPVSPSFAPT 1623
Query: 338 G------GPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASS 499
PA G ASP SP Y PTSP ++ + YSP+SP++SP SP + + +S
Sbjct: 1624 SPAYSPTSPAYGQASPTSPSYSPTSPGFS------PTSPNYSPTSPSFSPASPAF-SPTS 1676
Query: 500 PAYQPPS 520
P+Y P S
Sbjct: 1677 PSYSPTS 1683
[119][TOP]
>UniRef100_C8VQG7 DNA-directed RNA polymerase (EC 2.7.7.6)
[Source:UniProtKB/TrEMBL;Acc:Q873Q6] n=2 Tax=Emericella
nidulans RepID=C8VQG7_EMENI
Length = 1745
Score = 103 bits (257), Expect = 7e-21
Identities = 68/174 (39%), Positives = 89/174 (51%), Gaps = 7/174 (4%)
Frame = +2
Query: 20 FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAG 199
FSP +S ++P P SP T SP SPG SPRF G PA +
Sbjct: 1554 FSPAATSPAGYSPSSPFSANP-TSPGYSPTSSYSPTSPGMGITSPRFMTSPGFSPA--SP 1610
Query: 200 AYAPASPAYMATSPGMGY-SPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASP 367
++AP SPAY TSP G SP++P+ + +SPG+SP YSPTSPS SP
Sbjct: 1611 SFAPTSPAYSPTSPAYGQASPTSPSYSPTSPGFSPTSPNYSPTSPSF-----------SP 1659
Query: 368 QSPGYVPTSPAYARPGTVVAAA---NVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
SP + PTSP+Y+ + A + SP+SP Y+P SP ++ S Y P S
Sbjct: 1660 TSPAFSPTSPSYSPTSPAIGGARHLSPTSPTSPKYTPTSPGWSPTSPQTYSPTS 1713
Score = 83.6 bits (205), Expect = 8e-15
Identities = 66/188 (35%), Positives = 89/188 (47%), Gaps = 18/188 (9%)
Frame = +2
Query: 11 TASFSPIMSSADAAGRATPGRMT-PGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPA 187
T+S+SP ++ G +P MT PG SPA +P +P SP Y+ SP +G P+
Sbjct: 1582 TSSYSP---TSPGMGITSPRFMTSPGFSPA---SPSFAPTSPAYSPTSPAYGQASPTSPS 1635
Query: 188 GGAGA---------YAPASPAYMATSPGMGYSPSTPALAVSSPGYSPGYSPTSPSVGARG 340
+ Y+P SP++ TSP +SP+ SP YSPTSP++G G
Sbjct: 1636 YSPTSPGFSPTSPNYSPTSPSFSPTSP--AFSPT-----------SPSYSPTSPAIG--G 1680
Query: 341 GPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSP-AYSPFSPNYAAA-------S 496
SP SP Y PTSP +SP+SP YSP SPN+A + +
Sbjct: 1681 ARHLSPTSPTSPKYTPTSPG-------------WSPTSPQTYSPTSPNFAGSPTSPGGPT 1727
Query: 497 SPAYQPPS 520
SP Y P S
Sbjct: 1728 SPGYSPTS 1735
Score = 79.3 bits (194), Expect = 1e-13
Identities = 58/128 (45%), Positives = 70/128 (54%), Gaps = 8/128 (6%)
Frame = +2
Query: 161 GGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALA-VSSPGYSP--GYSPTSPSVG 331
GG P+GG G ++PA ATSP GYSPS+P A +SPGYSP YSPTSP +G
Sbjct: 1540 GGFTEYQPSGGFGGFSPA-----ATSPA-GYSPSSPFSANPTSPGYSPTSSYSPTSPGMG 1593
Query: 332 ARGGPAAGYASPQ---SPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAAS-- 496
SP+ SPG+ P SP++A P+SPAYSP SP Y AS
Sbjct: 1594 I--------TSPRFMTSPGFSPASPSFA-------------PTSPAYSPTSPAYGQASPT 1632
Query: 497 SPAYQPPS 520
SP+Y P S
Sbjct: 1633 SPSYSPTS 1640
[120][TOP]
>UniRef100_C5E245 DNA-directed RNA polymerase n=1 Tax=Lachancea thermotolerans CBS 6340
RepID=C5E245_LACTC
Length = 1740
Score = 103 bits (257), Expect = 7e-21
Identities = 64/154 (41%), Positives = 88/154 (57%), Gaps = 3/154 (1%)
Frame = +2
Query: 68 GRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGM 247
G +PG SP +P SP SP Y+ SP + + + +Y+P SP+Y TSP
Sbjct: 1538 GVASPGFSPT---SPAYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS- 1585
Query: 248 GYSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGT 418
YSP++P+ + +SP YSP YSPTSPS P + SP SP Y PTSP+Y+
Sbjct: 1586 -YSPTSPSYSPTSPSYSPTSPSYSPTSPSYS----PTSPSYSPTSPSYSPTSPSYS---- 1636
Query: 419 VVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
+ YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1637 --PTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 1667
Score = 102 bits (255), Expect = 1e-20
Identities = 67/171 (39%), Positives = 94/171 (54%), Gaps = 9/171 (5%)
Frame = +2
Query: 35 SSADAAGRATPG--RMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYA 208
+S G A+PG +P SP +P SP SP Y+ SP + + + +Y+
Sbjct: 1532 TSPGFGGVASPGFSPTSPAYSPT---SPSYSPTSPSYSPTSPSYSP-TSPSYSPTSPSYS 1587
Query: 209 PASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARG---GPAAGYASPQ 370
P SP+Y TSP YSP++P+ + +SP YSP YSPTSPS P + SP
Sbjct: 1588 PTSPSYSPTSPS--YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1645
Query: 371 SPGYVPTSPAYARPGTVVAAANV-YSPSSPAYSPFSPNYAAASSPAYQPPS 520
SP Y PTSP+Y+ + + YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1646 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 1695
Score = 102 bits (254), Expect = 2e-20
Identities = 67/171 (39%), Positives = 92/171 (53%), Gaps = 4/171 (2%)
Frame = +2
Query: 20 FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAG 199
FSP++ S + G G +P + G A SP FGG G + +
Sbjct: 1493 FSPLVDSGSTDAMSGGFTAYGGADYGGASSPF---SGYGDAPTSPGFGGVASPGFSPTSP 1549
Query: 200 AYAPASPAYMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYASPQ 370
AY+P SP+Y TSP YSP++P+ + +SP Y SP YSPTSPS P + SP
Sbjct: 1550 AYSPTSPSYSPTSP--SYSPTSPSYSPTSPSYSPTSPSYSPTSPSY----SPTSPSYSPT 1603
Query: 371 SPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
SP Y PTSP+Y+ + + YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1604 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 1653
Score = 101 bits (252), Expect = 3e-20
Identities = 68/178 (38%), Positives = 96/178 (53%), Gaps = 7/178 (3%)
Frame = +2
Query: 8 ATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPA 187
A+ FSP S A + + +P SP +P SP SP Y+ SP + +
Sbjct: 1540 ASPGFSPT-SPAYSPTSPSYSPTSPSYSPT---SPSYSPTSPSYSPTSPSYSP-TSPSYS 1594
Query: 188 GGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARG---GPA 349
+ +Y+P SP+Y TSP YSP++P+ + +SP YSP YSPTSPS P
Sbjct: 1595 PTSPSYSPTSPSYSPTSPS--YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1652
Query: 350 AGYASPQSPGYVPTSPAYARPGTVVAAANV-YSPSSPAYSPFSPNYAAASSPAYQPPS 520
+ SP SP Y PTSP+Y+ + + YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1653 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 1709
Score = 100 bits (249), Expect = 6e-20
Identities = 62/152 (40%), Positives = 86/152 (56%), Gaps = 4/152 (2%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP +P SP SP Y+ SP + + + +Y+P SP+Y TSP YS
Sbjct: 1590 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 1636
Query: 257 PSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVA 427
P++P+ + +SP YSP YSPTSPS P + SP SP Y PTSP+Y+ +
Sbjct: 1637 PTSPSYSPTSPSYSPTSPSYSPTSPSYS----PTSPSYSPTSPSYSPTSPSYSPTSPSYS 1692
Query: 428 AANV-YSPSSPAYSPFSPNYAAASSPAYQPPS 520
+ YSP+SP+YSP SP+Y + SP+Y P S
Sbjct: 1693 PTSPSYSPTSPSYSPTSPSY-SPGSPSYSPGS 1723
Score = 90.5 bits (223), Expect = 6e-17
Identities = 56/138 (40%), Positives = 76/138 (55%), Gaps = 4/138 (2%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP +P SP SP Y+ SP + + + +Y+P SP+Y TSP YS
Sbjct: 1604 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 1650
Query: 257 PSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVA 427
P++P+ + +SP YSP YSPTSPS P + SP SP Y PTSP+Y+ +
Sbjct: 1651 PTSPSYSPTSPSYSPTSPSYSPTSPSYS----PTSPSYSPTSPSYSPTSPSYSPTSPSYS 1706
Query: 428 AANV-YSPSSPAYSPFSP 478
+ YSP SP+YSP SP
Sbjct: 1707 PTSPSYSPGSPSYSPGSP 1724
[121][TOP]
>UniRef100_UPI0000E24648 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
(RPB1) n=1 Tax=Pan troglodytes RepID=UPI0000E24648
Length = 1913
Score = 103 bits (256), Expect = 1e-20
Identities = 71/187 (37%), Positives = 96/187 (51%), Gaps = 19/187 (10%)
Frame = +2
Query: 17 SFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGA 196
S+SP ++ A +PG TP +P SP SP Y+ SP + + +
Sbjct: 1592 SYSP---TSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNYSP-TSPSYSPTS 1647
Query: 197 GAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARG---GPAAGY 358
+Y+P SP+Y TSP YSP++P+ + +SP YSP YSPTSPS P +
Sbjct: 1648 PSYSPTSPSYSPTSPS--YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1705
Query: 359 ASPQSPGYVPTSPAYARPG-----TVV--AAANVYSPSSPAYSPFSPNYA------AASS 499
SP SP Y PTSP+Y+ TVV + + YSP+SP+YSP SP Y SS
Sbjct: 1706 YSPTSPSYSPTSPSYSPTSQSYHPTVVDSSTSPSYSPTSPSYSPSSPRYTPQSPTYTPSS 1765
Query: 500 PAYQPPS 520
P+Y P S
Sbjct: 1766 PSYSPSS 1772
Score = 99.4 bits (246), Expect = 1e-19
Identities = 74/182 (40%), Positives = 97/182 (53%), Gaps = 18/182 (9%)
Frame = +2
Query: 29 IMSSADAAGRATPGRMTPGR--SPAGRFTPRMSP----ASPGYAAMSPRFGGGLGGGPAG 190
I ++ G A P M G SP G +P M+P A+P Y A SP G G+ G AG
Sbjct: 1486 IPTNIPGLGAAGPTGMFFGSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGSGMTPGAAG 1545
Query: 191 -------GAGAYAPA-SPAYMATSPGMGYSPSTPALAVSSPG--YSPGYSPTSPSVGARG 340
A ++P SPA+ T PG SP + + SPG SP YSPTSP+ R
Sbjct: 1546 FSPSAASDASGFSPGYSPAWSPT-PGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPR- 1603
Query: 341 GPAAGYASPQSPGYVPTSPAYA--RPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQP 514
+ G +PQSP Y PTSP+Y+ P + N YSP+SP+YSP SP+Y + +SP+Y P
Sbjct: 1604 --SPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPN-YSPTSPSYSPTSPSY-SPTSPSYSP 1659
Query: 515 PS 520
S
Sbjct: 1660 TS 1661
Score = 95.9 bits (237), Expect = 2e-18
Identities = 62/161 (38%), Positives = 84/161 (52%), Gaps = 13/161 (8%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP +P SP SP Y+ SP + + + +Y+P SP+Y TSP YS
Sbjct: 1647 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 1693
Query: 257 PSTPALAVSSPGYSP---GYSPTSPSVGARG---------GPAAGYASPQSPGYVPTSPA 400
P++P+ + +SP YSP YSPTSPS + SP SP Y P+SP
Sbjct: 1694 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSQSYHPTVVDSSTSPSYSPTSPSYSPSSPR 1753
Query: 401 YA-RPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
Y + T ++ YSPSSP+YSP SP Y +SP+Y P S
Sbjct: 1754 YTPQSPTYTPSSPSYSPSSPSYSPTSPKY-TPTSPSYSPSS 1793
Score = 94.7 bits (234), Expect = 3e-18
Identities = 65/181 (35%), Positives = 88/181 (48%), Gaps = 12/181 (6%)
Frame = +2
Query: 14 ASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGG 193
+S SP S + + R TP +P SP+SP Y+ SP++
Sbjct: 1734 SSTSPSYSPTSPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKY--------TPT 1785
Query: 194 AGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYAS 364
+ +Y+P+SP Y TSP YSP++P + +SP Y SP YSPT+P + P + S
Sbjct: 1786 SPSYSPSSPEYTPTSP--KYSPTSPKYSPTSPKYSPTSPTYSPTTP----KYSPTSPTYS 1839
Query: 365 PQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAAS---------SPAYQPP 517
P SP Y PTSP Y+ + YSP+SP YSP SP Y+ S SP Y P
Sbjct: 1840 PTSPVYTPTSPKYS------PTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPT 1893
Query: 518 S 520
S
Sbjct: 1894 S 1894
Score = 92.0 bits (227), Expect = 2e-17
Identities = 62/167 (37%), Positives = 81/167 (48%), Gaps = 3/167 (1%)
Frame = +2
Query: 23 SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
SP S + + T + TP +P +P SP Y+ SP+
Sbjct: 1765 SPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYSPTSPK--------------- 1809
Query: 203 YAPASPAYMATSPGMGYSPSTPALAVSSPGYSPG---YSPTSPSVGARGGPAAGYASPQS 373
Y+P SP Y TSP YSP+TP + +SP YSP Y+PTSP + P + SP S
Sbjct: 1810 YSPTSPKYSPTSPT--YSPTTPKYSPTSPTYSPTSPVYTPTSP----KYSPTSPTYSPTS 1863
Query: 374 PGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQP 514
P Y PTSP Y+ + YSP+SP YSP SP Y + +SPA P
Sbjct: 1864 PKYSPTSPTYS---PTSPKGSTYSPTSPGYSPTSPTY-SLTSPAISP 1906
[122][TOP]
>UniRef100_Q9XZU9 DNA-directed RNA polymerase n=1 Tax=Drosophila subobscura
RepID=Q9XZU9_DROSU
Length = 1889
Score = 103 bits (256), Expect = 1e-20
Identities = 71/201 (35%), Positives = 97/201 (48%), Gaps = 29/201 (14%)
Frame = +2
Query: 5 NATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGG-- 178
+ + S+SP + A+ +PG +P SP+ +P SP SP YAA SPR+
Sbjct: 1574 SVSPSYSPTSPNYTAS---SPGGASPNYSPS---SPNYSPTSPLYAAPSPRYASTTPNFN 1627
Query: 179 ----GPAGGAGAYAPASPAYMATS-----------------PGMGYSPSTPALAVSSPGY 295
G + A Y+P SP Y TS PG YSPS+ + +SP Y
Sbjct: 1628 PQSTGYSPSASGYSPTSPVYSPTSNFPSSPSFAGSGSNMYSPGNAYSPSSTNYSPNSPSY 1687
Query: 296 SP---GYSPTSPSVGARG---GPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSP 457
SP YSP+SPS P++ SP SP Y P +P+Y+ +A+ YSP+SP
Sbjct: 1688 SPTSPSYSPSSPSYSPTSPCYSPSSPSYSPTSPNYTPATPSYSPTSPNYSASPHYSPASP 1747
Query: 458 AYSPFSPNYAAASSPAYQPPS 520
AYS Y + +SP Y PPS
Sbjct: 1748 AYSQTGAKY-SPTSPTYSPPS 1767
Score = 97.8 bits (242), Expect = 4e-19
Identities = 67/176 (38%), Positives = 88/176 (50%), Gaps = 5/176 (2%)
Frame = +2
Query: 8 ATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPA 187
AT S+SP + A+ +P +P S G + SP SP Y+ SP + G +
Sbjct: 1725 ATPSYSPTSPNYSASPHYSPA--SPAYSQTGA---KYSPTSPTYSPPSPSYDG------S 1773
Query: 188 GGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSPG--YSPTSPSVGA---RGGPAA 352
G+ Y P SP Y SP YSP++P + SSP +SP YSPT + A R P
Sbjct: 1774 PGSPQYTPGSPQYSPASPK--YSPTSPLYSPSSPQHSPSNQYSPTGSTYSATSPRYSPNM 1831
Query: 353 GYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
SP S Y PTSP Y A YSP+SP YSP +P++ + +SPAY P S
Sbjct: 1832 SIYSPSSTKYSPTSPTYT------PTARNYSPTSPMYSPTAPSHYSPTSPAYSPSS 1881
Score = 84.0 bits (206), Expect = 6e-15
Identities = 59/166 (35%), Positives = 79/166 (47%), Gaps = 18/166 (10%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMG-- 250
+P SP +P SP+SP Y+ SP + + + Y PA+P+Y TSP
Sbjct: 1684 SPSYSPT---SPSYSPSSPSYSPTSPCYSPS-SPSYSPTSPNYTPATPSYSPTSPNYSAS 1739
Query: 251 --YSPSTPALAVSSPGYSPG---YSPTSPSVGARGG-----PAAGYASPQSPGYVPTSPA 400
YSP++PA + + YSP YSP SPS G P + SP SP Y PTSP
Sbjct: 1740 PHYSPASPAYSQTGAKYSPTSPTYSPPSPSYDGSPGSPQYTPGSPQYSPASPKYSPTSPL 1799
Query: 401 YARPGTVVAAANVYSPSSPAYSPFSPNYA------AASSPAYQPPS 520
Y+ + +N YSP+ YS SP Y+ + SS Y P S
Sbjct: 1800 YSPSSPQHSPSNQYSPTGSTYSATSPRYSPNMSIYSPSSTKYSPTS 1845
Score = 77.8 bits (190), Expect = 4e-13
Identities = 63/181 (34%), Positives = 82/181 (45%), Gaps = 27/181 (14%)
Frame = +2
Query: 53 GRATPGRMTPGRSP-AGRFTPRMSPASPGYAAMSP---RFGGGLGGGPAGGAGAYAPASP 220
G +TP MTP +P TPR +AM+P F +G + +++PA P
Sbjct: 1496 GGSTPS-MTPPMTPWVNCNTPRYFSPPGHVSAMTPGGPSFSPSAASDASGMSPSWSPAHP 1554
Query: 221 AYMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYASPQSPGYVPT 391
+SP SP PA SP Y SP Y+ +SP GG + Y SP SP Y PT
Sbjct: 1555 GSSPSSPAPSMSPFYPASPSVSPSYSPTSPNYTASSP-----GGASPNY-SPSSPNYSPT 1608
Query: 392 SPAYARPGTVVA---------------AANVYSPSSPAYS-----PFSPNYAAASSPAYQ 511
SP YA P A +A+ YSP+SP YS P SP++A + S Y
Sbjct: 1609 SPLYAAPSPRYASTTPNFNPQSTGYSPSASGYSPTSPVYSPTSNFPSSPSFAGSGSNMYS 1668
Query: 512 P 514
P
Sbjct: 1669 P 1669
Score = 66.6 bits (161), Expect = 1e-09
Identities = 49/131 (37%), Positives = 65/131 (49%), Gaps = 4/131 (3%)
Frame = +2
Query: 23 SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
SP + + + TPG +P SPA +P+ SP SP Y+ SP+ P G
Sbjct: 1767 SPSYDGSPGSPQYTPG--SPQYSPA---SPKYSPTSPLYSPSSPQHSPSNQYSPTGST-- 1819
Query: 203 YAPASPAYMATSPGMG-YSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQ 370
Y+ SP Y SP M YSPS+ + +SP Y+P YSPTSP A + SP
Sbjct: 1820 YSATSPRY---SPNMSIYSPSSTKYSPTSPTYTPTARNYSPTSPMYSPT---APSHYSPT 1873
Query: 371 SPGYVPTSPAY 403
SP Y P+SP +
Sbjct: 1874 SPAYSPSSPTF 1884
[123][TOP]
>UniRef100_Q9XZU8 DNA-directed RNA polymerase (Fragment) n=1 Tax=Drosophila
pseudoobscura pseudoobscura RepID=Q9XZU8_DROPS
Length = 1811
Score = 103 bits (256), Expect = 1e-20
Identities = 71/201 (35%), Positives = 96/201 (47%), Gaps = 29/201 (14%)
Frame = +2
Query: 5 NATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGG-- 178
+ + S+SP + A+ +PG +P SP+ +P SP SP YAA SPR+
Sbjct: 1496 SVSPSYSPTSPNYTAS---SPGGASPNYSPS---SPNYSPTSPLYAAASPRYASTTPNFN 1549
Query: 179 ----GPAGGAGAYAPASPAYMATS-----------------PGMGYSPSTPALAVSSPGY 295
G + A Y+P SP Y TS PG YSPS+ + +SP Y
Sbjct: 1550 PQSTGYSPSASGYSPTSPVYSPTSNFPSSPSFAGSGSNMYSPGNAYSPSSTNYSPNSPSY 1609
Query: 296 SP---GYSPTSPSVGARG---GPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSP 457
SP YSP+SPS P + SP SP Y P +P+Y+ +A+ YSP+SP
Sbjct: 1610 SPTSPSYSPSSPSYSPTSPCYSPTSPSYSPTSPNYTPATPSYSPTSPNYSASPHYSPASP 1669
Query: 458 AYSPFSPNYAAASSPAYQPPS 520
AYS Y + +SP Y PPS
Sbjct: 1670 AYSQTGAKY-SPTSPTYSPPS 1689
Score = 97.8 bits (242), Expect = 4e-19
Identities = 67/176 (38%), Positives = 88/176 (50%), Gaps = 5/176 (2%)
Frame = +2
Query: 8 ATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPA 187
AT S+SP + A+ +P +P S G + SP SP Y+ SP + G +
Sbjct: 1647 ATPSYSPTSPNYSASPHYSPA--SPAYSQTGA---KYSPTSPTYSPPSPSYDG------S 1695
Query: 188 GGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSPG--YSPTSPSVGA---RGGPAA 352
G+ Y P SP Y SP YSP++P + SSP +SP YSPT + A R P
Sbjct: 1696 PGSPQYTPGSPQYSPASPK--YSPTSPLYSPSSPQHSPSNQYSPTGSTYSATSPRYSPNM 1753
Query: 353 GYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
SP S Y PTSP Y A YSP+SP YSP +P++ + +SPAY P S
Sbjct: 1754 SIYSPSSTKYSPTSPTYT------PTARNYSPTSPMYSPTAPSHYSPTSPAYSPSS 1803
Score = 83.6 bits (205), Expect = 8e-15
Identities = 59/166 (35%), Positives = 79/166 (47%), Gaps = 18/166 (10%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMG-- 250
+P SP+ +P SP SP Y+ SP + + + Y PA+P+Y TSP
Sbjct: 1613 SPSYSPS---SPSYSPTSPCYSPTSPSY--------SPTSPNYTPATPSYSPTSPNYSAS 1661
Query: 251 --YSPSTPALAVSSPGYSPG---YSPTSPSVGARGG-----PAAGYASPQSPGYVPTSPA 400
YSP++PA + + YSP YSP SPS G P + SP SP Y PTSP
Sbjct: 1662 PHYSPASPAYSQTGAKYSPTSPTYSPPSPSYDGSPGSPQYTPGSPQYSPASPKYSPTSPL 1721
Query: 401 YARPGTVVAAANVYSPSSPAYSPFSPNYA------AASSPAYQPPS 520
Y+ + +N YSP+ YS SP Y+ + SS Y P S
Sbjct: 1722 YSPSSPQHSPSNQYSPTGSTYSATSPRYSPNMSIYSPSSTKYSPTS 1767
Score = 74.7 bits (182), Expect = 4e-12
Identities = 62/181 (34%), Positives = 81/181 (44%), Gaps = 27/181 (14%)
Frame = +2
Query: 53 GRATPGRMTPGRSP-AGRFTPRMSPASPGYAAMSP---RFGGGLGGGPAGGAGAYAPASP 220
G +TP MTP +P TPR +AM+P F +G + +++PA P
Sbjct: 1418 GGSTPS-MTPPMTPWVNCNTPRYFSPPGHVSAMTPGGPSFSPSAASDASGMSPSWSPAHP 1476
Query: 221 AYMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYASPQSPGYVPT 391
+SP SP PA SP Y SP Y+ +SP GG + Y SP SP Y PT
Sbjct: 1477 GSSPSSPAPSMSPYYPASPSVSPSYSPTSPNYTASSP-----GGASPNY-SPSSPNYSPT 1530
Query: 392 SPAYARPGTVVA---------------AANVYSPSSPAYS-----PFSPNYAAASSPAYQ 511
SP YA A +A+ YSP+SP YS P SP++A + S Y
Sbjct: 1531 SPLYAAASPRYASTTPNFNPQSTGYSPSASGYSPTSPVYSPTSNFPSSPSFAGSGSNMYS 1590
Query: 512 P 514
P
Sbjct: 1591 P 1591
Score = 66.6 bits (161), Expect = 1e-09
Identities = 49/131 (37%), Positives = 65/131 (49%), Gaps = 4/131 (3%)
Frame = +2
Query: 23 SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
SP + + + TPG +P SPA +P+ SP SP Y+ SP+ P G
Sbjct: 1689 SPSYDGSPGSPQYTPG--SPQYSPA---SPKYSPTSPLYSPSSPQHSPSNQYSPTGST-- 1741
Query: 203 YAPASPAYMATSPGMG-YSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQ 370
Y+ SP Y SP M YSPS+ + +SP Y+P YSPTSP A + SP
Sbjct: 1742 YSATSPRY---SPNMSIYSPSSTKYSPTSPTYTPTARNYSPTSPMYSPT---APSHYSPT 1795
Query: 371 SPGYVPTSPAY 403
SP Y P+SP +
Sbjct: 1796 SPAYSPSSPTF 1806
[124][TOP]
>UniRef100_Q9XZS2 DNA-directed RNA polymerase n=1 Tax=Drosophila madeirensis
RepID=Q9XZS2_DROMD
Length = 1889
Score = 103 bits (256), Expect = 1e-20
Identities = 71/201 (35%), Positives = 97/201 (48%), Gaps = 29/201 (14%)
Frame = +2
Query: 5 NATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGG-- 178
+ + S+SP + A+ +PG +P SP+ +P SP SP YAA SPR+
Sbjct: 1574 SVSPSYSPTSPNYTAS---SPGGASPNYSPS---SPNYSPTSPLYAAPSPRYASTTPNFN 1627
Query: 179 ----GPAGGAGAYAPASPAYMATS-----------------PGMGYSPSTPALAVSSPGY 295
G + A Y+P SP Y TS PG YSPS+ + +SP Y
Sbjct: 1628 PQSTGYSPSASGYSPTSPVYSPTSNFPSSPSFAGSGSNMYSPGNAYSPSSTNYSPNSPSY 1687
Query: 296 SP---GYSPTSPSVGARG---GPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSP 457
SP YSP+SPS P++ SP SP Y P +P+Y+ +A+ YSP+SP
Sbjct: 1688 SPTSPSYSPSSPSYSPTSPCYSPSSPSYSPTSPNYTPATPSYSPTSPNYSASPHYSPASP 1747
Query: 458 AYSPFSPNYAAASSPAYQPPS 520
AYS Y + +SP Y PPS
Sbjct: 1748 AYSQTGAKY-SPTSPTYSPPS 1767
Score = 97.8 bits (242), Expect = 4e-19
Identities = 67/176 (38%), Positives = 88/176 (50%), Gaps = 5/176 (2%)
Frame = +2
Query: 8 ATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPA 187
AT S+SP + A+ +P +P S G + SP SP Y+ SP + G +
Sbjct: 1725 ATPSYSPTSPNYSASPHYSPA--SPAYSQTGA---KYSPTSPTYSPPSPSYDG------S 1773
Query: 188 GGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSPG--YSPTSPSVGA---RGGPAA 352
G+ Y P SP Y SP YSP++P + SSP +SP YSPT + A R P
Sbjct: 1774 PGSPQYTPGSPQYSPASPK--YSPTSPLYSPSSPQHSPSNQYSPTGSTYSATSPRYSPNM 1831
Query: 353 GYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
SP S Y PTSP Y A YSP+SP YSP +P++ + +SPAY P S
Sbjct: 1832 SIYSPSSTKYSPTSPTYT------PTARNYSPTSPMYSPTAPSHYSPTSPAYSPSS 1881
Score = 84.0 bits (206), Expect = 6e-15
Identities = 59/166 (35%), Positives = 79/166 (47%), Gaps = 18/166 (10%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMG-- 250
+P SP +P SP+SP Y+ SP + + + Y PA+P+Y TSP
Sbjct: 1684 SPSYSPT---SPSYSPSSPSYSPTSPCYSPS-SPSYSPTSPNYTPATPSYSPTSPNYSAS 1739
Query: 251 --YSPSTPALAVSSPGYSPG---YSPTSPSVGARGG-----PAAGYASPQSPGYVPTSPA 400
YSP++PA + + YSP YSP SPS G P + SP SP Y PTSP
Sbjct: 1740 PHYSPASPAYSQTGAKYSPTSPTYSPPSPSYDGSPGSPQYTPGSPQYSPASPKYSPTSPL 1799
Query: 401 YARPGTVVAAANVYSPSSPAYSPFSPNYA------AASSPAYQPPS 520
Y+ + +N YSP+ YS SP Y+ + SS Y P S
Sbjct: 1800 YSPSSPQHSPSNQYSPTGSTYSATSPRYSPNMSIYSPSSTKYSPTS 1845
Score = 77.8 bits (190), Expect = 4e-13
Identities = 63/181 (34%), Positives = 82/181 (45%), Gaps = 27/181 (14%)
Frame = +2
Query: 53 GRATPGRMTPGRSP-AGRFTPRMSPASPGYAAMSP---RFGGGLGGGPAGGAGAYAPASP 220
G +TP MTP +P TPR +AM+P F +G + +++PA P
Sbjct: 1496 GGSTPS-MTPPMTPWVNCNTPRYFSPPGHVSAMTPGGPSFSPSAASDASGMSPSWSPAHP 1554
Query: 221 AYMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYASPQSPGYVPT 391
+SP SP PA SP Y SP Y+ +SP GG + Y SP SP Y PT
Sbjct: 1555 GSSPSSPAPSMSPFYPASPSVSPSYSPTSPNYTASSP-----GGASPNY-SPSSPNYSPT 1608
Query: 392 SPAYARPGTVVA---------------AANVYSPSSPAYS-----PFSPNYAAASSPAYQ 511
SP YA P A +A+ YSP+SP YS P SP++A + S Y
Sbjct: 1609 SPLYAAPSPRYASTTPNFNPQSTGYSPSASGYSPTSPVYSPTSNFPSSPSFAGSGSNMYS 1668
Query: 512 P 514
P
Sbjct: 1669 P 1669
Score = 66.6 bits (161), Expect = 1e-09
Identities = 49/131 (37%), Positives = 65/131 (49%), Gaps = 4/131 (3%)
Frame = +2
Query: 23 SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
SP + + + TPG +P SPA +P+ SP SP Y+ SP+ P G
Sbjct: 1767 SPSYDGSPGSPQYTPG--SPQYSPA---SPKYSPTSPLYSPSSPQHSPSNQYSPTGST-- 1819
Query: 203 YAPASPAYMATSPGMG-YSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQ 370
Y+ SP Y SP M YSPS+ + +SP Y+P YSPTSP A + SP
Sbjct: 1820 YSATSPRY---SPNMSIYSPSSTKYSPTSPTYTPTARNYSPTSPMYSPT---APSHYSPT 1873
Query: 371 SPGYVPTSPAY 403
SP Y P+SP +
Sbjct: 1874 SPAYSPSSPTF 1884
[125][TOP]
>UniRef100_Q29IN2 DNA-directed RNA polymerase n=1 Tax=Drosophila pseudoobscura
pseudoobscura RepID=Q29IN2_DROPS
Length = 1889
Score = 103 bits (256), Expect = 1e-20
Identities = 71/201 (35%), Positives = 96/201 (47%), Gaps = 29/201 (14%)
Frame = +2
Query: 5 NATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGG-- 178
+ + S+SP + A+ +PG +P SP+ +P SP SP YAA SPR+
Sbjct: 1574 SVSPSYSPTSPNYTAS---SPGGASPNYSPS---SPNYSPTSPLYAAASPRYASTTPNFN 1627
Query: 179 ----GPAGGAGAYAPASPAYMATS-----------------PGMGYSPSTPALAVSSPGY 295
G + A Y+P SP Y TS PG YSPS+ + +SP Y
Sbjct: 1628 PQSTGYSPSASGYSPTSPVYSPTSNFPSSPSFAGSGSNMYSPGNAYSPSSTNYSPNSPSY 1687
Query: 296 SP---GYSPTSPSVGARG---GPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSP 457
SP YSP+SPS P + SP SP Y P +P+Y+ +A+ YSP+SP
Sbjct: 1688 SPTSPSYSPSSPSYSPTSPCYSPTSPSYSPTSPNYTPATPSYSPTSPNYSASPHYSPASP 1747
Query: 458 AYSPFSPNYAAASSPAYQPPS 520
AYS Y + +SP Y PPS
Sbjct: 1748 AYSQTGAKY-SPTSPTYSPPS 1767
Score = 97.8 bits (242), Expect = 4e-19
Identities = 67/176 (38%), Positives = 88/176 (50%), Gaps = 5/176 (2%)
Frame = +2
Query: 8 ATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPA 187
AT S+SP + A+ +P +P S G + SP SP Y+ SP + G +
Sbjct: 1725 ATPSYSPTSPNYSASPHYSPA--SPAYSQTGA---KYSPTSPTYSPPSPSYDG------S 1773
Query: 188 GGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSPG--YSPTSPSVGA---RGGPAA 352
G+ Y P SP Y SP YSP++P + SSP +SP YSPT + A R P
Sbjct: 1774 PGSPQYTPGSPQYSPASPK--YSPTSPLYSPSSPQHSPSNQYSPTGSTYSATSPRYSPNM 1831
Query: 353 GYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
SP S Y PTSP Y A YSP+SP YSP +P++ + +SPAY P S
Sbjct: 1832 SIYSPSSTKYSPTSPTYT------PTARNYSPTSPMYSPTAPSHYSPTSPAYSPSS 1881
Score = 83.6 bits (205), Expect = 8e-15
Identities = 59/166 (35%), Positives = 79/166 (47%), Gaps = 18/166 (10%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMG-- 250
+P SP+ +P SP SP Y+ SP + + + Y PA+P+Y TSP
Sbjct: 1691 SPSYSPS---SPSYSPTSPCYSPTSPSY--------SPTSPNYTPATPSYSPTSPNYSAS 1739
Query: 251 --YSPSTPALAVSSPGYSPG---YSPTSPSVGARGG-----PAAGYASPQSPGYVPTSPA 400
YSP++PA + + YSP YSP SPS G P + SP SP Y PTSP
Sbjct: 1740 PHYSPASPAYSQTGAKYSPTSPTYSPPSPSYDGSPGSPQYTPGSPQYSPASPKYSPTSPL 1799
Query: 401 YARPGTVVAAANVYSPSSPAYSPFSPNYA------AASSPAYQPPS 520
Y+ + +N YSP+ YS SP Y+ + SS Y P S
Sbjct: 1800 YSPSSPQHSPSNQYSPTGSTYSATSPRYSPNMSIYSPSSTKYSPTS 1845
Score = 74.7 bits (182), Expect = 4e-12
Identities = 62/181 (34%), Positives = 81/181 (44%), Gaps = 27/181 (14%)
Frame = +2
Query: 53 GRATPGRMTPGRSP-AGRFTPRMSPASPGYAAMSP---RFGGGLGGGPAGGAGAYAPASP 220
G +TP MTP +P TPR +AM+P F +G + +++PA P
Sbjct: 1496 GGSTPS-MTPPMTPWVNCNTPRYFSPPGHVSAMTPGGPSFSPSAASDASGMSPSWSPAHP 1554
Query: 221 AYMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYASPQSPGYVPT 391
+SP SP PA SP Y SP Y+ +SP GG + Y SP SP Y PT
Sbjct: 1555 GSSPSSPAPSMSPYYPASPSVSPSYSPTSPNYTASSP-----GGASPNY-SPSSPNYSPT 1608
Query: 392 SPAYARPGTVVA---------------AANVYSPSSPAYS-----PFSPNYAAASSPAYQ 511
SP YA A +A+ YSP+SP YS P SP++A + S Y
Sbjct: 1609 SPLYAAASPRYASTTPNFNPQSTGYSPSASGYSPTSPVYSPTSNFPSSPSFAGSGSNMYS 1668
Query: 512 P 514
P
Sbjct: 1669 P 1669
Score = 66.6 bits (161), Expect = 1e-09
Identities = 49/131 (37%), Positives = 65/131 (49%), Gaps = 4/131 (3%)
Frame = +2
Query: 23 SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
SP + + + TPG +P SPA +P+ SP SP Y+ SP+ P G
Sbjct: 1767 SPSYDGSPGSPQYTPG--SPQYSPA---SPKYSPTSPLYSPSSPQHSPSNQYSPTGST-- 1819
Query: 203 YAPASPAYMATSPGMG-YSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQ 370
Y+ SP Y SP M YSPS+ + +SP Y+P YSPTSP A + SP
Sbjct: 1820 YSATSPRY---SPNMSIYSPSSTKYSPTSPTYTPTARNYSPTSPMYSPT---APSHYSPT 1873
Query: 371 SPGYVPTSPAY 403
SP Y P+SP +
Sbjct: 1874 SPAYSPSSPTF 1884
[126][TOP]
>UniRef100_B6AG69 DNA-directed RNA polymerase n=1 Tax=Cryptosporidium muris RN66
RepID=B6AG69_9CRYT
Length = 1927
Score = 103 bits (256), Expect = 1e-20
Identities = 68/177 (38%), Positives = 96/177 (54%), Gaps = 6/177 (3%)
Frame = +2
Query: 8 ATASFSPI--MSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGG 181
AT+++SP + S D G ++ M+P +P SP SP Y+ SP +
Sbjct: 1661 ATSAYSPTSPVYSGDKDGDSSSPFMSPTSPGVEPLSPNYSPTSPNYSPTSPNY-SPTSPN 1719
Query: 182 PAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPSVGARGGPAA 352
+ + Y+P SP Y TSP YSP++P + +SP Y SP YSPTSP+ P +
Sbjct: 1720 YSPTSPHYSPTSPHYSPTSP--HYSPTSPHYSPTSPNYSPTSPHYSPTSPNY----SPTS 1773
Query: 353 GYASPQSPGYVPTSPAYARPGTVVAAANV-YSPSSPAYSPFSPNYAAASSPAYQPPS 520
+ SP SP Y PTSP Y+ + ++ YSP+SP+Y+P SPNY + SSP Y P S
Sbjct: 1774 PHYSPTSPNYSPTSPHYSPTSPNYSPSSPHYSPTSPSYNPASPNY-SPSSPHYNPAS 1829
Score = 93.6 bits (231), Expect = 8e-18
Identities = 67/164 (40%), Positives = 83/164 (50%), Gaps = 16/164 (9%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP +P SP SP Y+ SP + + + Y+P SP Y TSP YS
Sbjct: 1738 SPHYSPT---SPHYSPTSPNYSPTSPHY--------SPTSPNYSPTSPHYSPTSPN--YS 1784
Query: 257 PSTPALAVSSPGYSPG---YSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYA--RPGTV 421
P++P + +SP YSP YSPTSPS PA+ SP SP Y P SP Y+ P
Sbjct: 1785 PTSPHYSPTSPNYSPSSPHYSPTSPSYN----PASPNYSPSSPHYNPASPNYSPSSPQYN 1840
Query: 422 VAAANVYSPSSPAYSPFSPNYAAAS-----------SPAYQPPS 520
A N YSPSSP Y+P SPNY+ +S SP Y P S
Sbjct: 1841 PALPN-YSPSSPQYNPTSPNYSPSSPNYVLSNGNIDSPQYSPSS 1883
Score = 87.0 bits (214), Expect = 7e-16
Identities = 65/168 (38%), Positives = 83/168 (49%), Gaps = 20/168 (11%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP +P SP SP Y+ SP + + + Y+P+SP Y TSP Y+
Sbjct: 1766 SPNYSPT---SPHYSPTSPNYSPTSPHY--------SPTSPNYSPSSPHYSPTSPS--YN 1812
Query: 257 PSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYA--RPGTV 421
P++P + SSP Y SP YSP+SP PA SP SP Y PTSP Y+ P V
Sbjct: 1813 PASPNYSPSSPHYNPASPNYSPSSPQYN----PALPNYSPSSPQYNPTSPNYSPSSPNYV 1868
Query: 422 VAAANV----YSPSSP-------AYSPFSPNYA----AASSPAYQPPS 520
++ N+ YSPSSP AY P SP+Y AA Y P S
Sbjct: 1869 LSNGNIDSPQYSPSSPHYDQSVAAYHPTSPSYTSTNMAAEEAEYSPTS 1916
Score = 78.6 bits (192), Expect = 3e-13
Identities = 63/184 (34%), Positives = 83/184 (45%), Gaps = 27/184 (14%)
Frame = +2
Query: 50 AGRATPGRMTPGR-----SPAGRFTPR-------------MSPASPGYAAMSPRFGGGLG 175
+G+ +P +MTP SP+G +P +P SP YA SP +G
Sbjct: 1590 SGQFSPVQMTPRSPMSPVSPSGILSPMPYSPASPTSPLIDYTPTSPIYAVRSPAYGHETE 1649
Query: 176 GGPAG------GAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPSV 328
AY+P SP Y G S+P ++ +SPG SP YSPTSP+
Sbjct: 1650 ERTKKRYKANIATSAYSPTSPVYSGDKDG---DSSSPFMSPTSPGVEPLSPNYSPTSPNY 1706
Query: 329 GARGGPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAY 508
SP SP Y PTSP Y+ + YSP+SP YSP SP+Y + +SP Y
Sbjct: 1707 -----------SPTSPNYSPTSPNYS------PTSPHYSPTSPHYSPTSPHY-SPTSPHY 1748
Query: 509 QPPS 520
P S
Sbjct: 1749 SPTS 1752
Score = 60.1 bits (144), Expect = 9e-08
Identities = 49/135 (36%), Positives = 65/135 (48%), Gaps = 8/135 (5%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP +P +PASP Y+ SP + PA + Y+P+SP Y P YS
Sbjct: 1801 SPHYSPT---SPSYNPASPNYSPSSPHYN------PA--SPNYSPSSPQYNPALPN--YS 1847
Query: 257 PSTPALAVSSPGYSPGYSPTSPS-VGARGGPAAGYASPQSP-------GYVPTSPAYARP 412
PS+P + SP YSP+SP+ V + G + SP SP Y PTSP+Y
Sbjct: 1848 PSSPQYNPT----SPNYSPSSPNYVLSNGNIDSPQYSPSSPHYDQSVAAYHPTSPSYTST 1903
Query: 413 GTVVAAANVYSPSSP 457
A YSP+SP
Sbjct: 1904 NMAAEEAE-YSPTSP 1917
[127][TOP]
>UniRef100_Q6CBQ3 DNA-directed RNA polymerase n=1 Tax=Yarrowia lipolytica
RepID=Q6CBQ3_YARLI
Length = 1750
Score = 103 bits (256), Expect = 1e-20
Identities = 67/180 (37%), Positives = 94/180 (52%), Gaps = 24/180 (13%)
Frame = +2
Query: 53 GRATPG--RMTPGRSPA------GRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYA 208
G A+PG +P SP+ G +P SP+SP +AA SP + + + +Y+
Sbjct: 1548 GAASPGFAATSPSYSPSSPGMGLGAASPSFSPSSPAFAATSPSY--------SPSSPSYS 1599
Query: 209 PASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPG 379
P SP+Y TSP YSP++P+ + +SP YSP YSPTSPS P + SP SP
Sbjct: 1600 PTSPSYSPTSPS--YSPTSPSYSPTSPSYSPTSPSYSPTSPSYS----PTSPSYSPTSPS 1653
Query: 380 YVPTSPAYARPGTVVAAANV-------------YSPSSPAYSPFSPNYAAASSPAYQPPS 520
Y PTSP+Y+ + + YSP+SP+YSP SP + A +S +Y P S
Sbjct: 1654 YSPTSPSYSPTSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPKFNAGASTSYSPTS 1713
Score = 99.0 bits (245), Expect = 2e-19
Identities = 72/183 (39%), Positives = 94/183 (51%), Gaps = 12/183 (6%)
Frame = +2
Query: 8 ATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPA 187
A+ SFSP S A AA + +P SP +P SP SP Y+ SP
Sbjct: 1573 ASPSFSP-SSPAFAATSPSYSPSSPSYSPT---SPSYSPTSPSYSPTSP----------- 1617
Query: 188 GGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARG-GPAAG 355
+Y+P SP+Y TSP YSP++P+ + +SP YSP YSPTSPS P +
Sbjct: 1618 ----SYSPTSPSYSPTSPS--YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSYSPTSP 1671
Query: 356 YASPQSPGYVPTSPAYARPGTVVAAANVYSPSSP--------AYSPFSPNYAAASSPAYQ 511
SP SP Y PTSP+Y+ + YSPSSP +YSP SP+Y + +SP+Y
Sbjct: 1672 SYSPTSPSYSPTSPSYS------PTSPSYSPSSPKFNAGASTSYSPTSPSY-SPTSPSYS 1724
Query: 512 PPS 520
P S
Sbjct: 1725 PTS 1727
Score = 96.7 bits (239), Expect = 9e-19
Identities = 61/146 (41%), Positives = 77/146 (52%), Gaps = 27/146 (18%)
Frame = +2
Query: 164 GGLGGGPAGGAGAYAPASP----------------AYMATSPGMG-------YSPSTPAL 274
GG G G G AY P SP +Y +SPGMG +SPS+PA
Sbjct: 1525 GGFGHGGDGSGSAYTPTSPFSSFGAASPGFAATSPSYSPSSPGMGLGAASPSFSPSSPAF 1584
Query: 275 AVSSPGY---SPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVAAAN-VY 442
A +SP Y SP YSPTSPS P + SP SP Y PTSP+Y+ + + Y
Sbjct: 1585 AATSPSYSPSSPSYSPTSPSY----SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1640
Query: 443 SPSSPAYSPFSPNYAAASSPAYQPPS 520
SP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1641 SPTSPSYSPTSPSY-SPTSPSYSPTS 1665
Score = 91.3 bits (225), Expect = 4e-17
Identities = 62/174 (35%), Positives = 85/174 (48%), Gaps = 11/174 (6%)
Frame = +2
Query: 8 ATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPA 187
A A+ SP S + + T +P +P SP SP Y+ SP + +
Sbjct: 1583 AFAATSPSYSPSSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP-TSPSYS 1641
Query: 188 GGAGAYAPASPAYMATSPGMG---YSPSTPALAVSSPGYSP---GYSPTSPSVGA----- 334
+ +Y+P SP+Y TSP YSP++P+ + +SP YSP YSPTSPS
Sbjct: 1642 PTSPSYSPTSPSYSPTSPSYSPTSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPKF 1701
Query: 335 RGGPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAAS 496
G + Y SP SP Y PTSP+ YSP+SP+YSP SP+Y+ S
Sbjct: 1702 NAGASTSY-SPTSPSYSPTSPS-------------YSPTSPSYSPTSPSYSPGS 1741
Score = 55.1 bits (131), Expect = 3e-06
Identities = 35/89 (39%), Positives = 44/89 (49%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP +P SP SP Y+ SP+F AG + +Y+P SP+Y TSP YS
Sbjct: 1677 SPSYSPT---SPSYSPTSPSYSPSSPKFN-------AGASTSYSPTSPSYSPTSPS--YS 1724
Query: 257 PSTPALAVSSPGYSPGYSPTSPSVGARGG 343
P+ SP YSPTSPS G
Sbjct: 1725 PT-----------SPSYSPTSPSYSPGSG 1742
[128][TOP]
>UniRef100_A5E6J4 DNA-directed RNA polymerase n=1 Tax=Lodderomyces elongisporus
RepID=A5E6J4_LODEL
Length = 1745
Score = 103 bits (256), Expect = 1e-20
Identities = 70/195 (35%), Positives = 100/195 (51%), Gaps = 22/195 (11%)
Frame = +2
Query: 2 INATASFSPIMSSADAAGRATPGRMTPGRSPA--GRFTPRMSPASPGYAAMSPRFGG--- 166
++ A FSP+ ++ + G + G P G +P +PGY SP +GG
Sbjct: 1479 VDEGAGFSPVHNAM--SDNMNGGLTSYGGQPTSPGNTSPFSYGTTPGYGGTSPGYGGTSP 1536
Query: 167 GLGGGPAGGA-----GAYAPASPAYMATSPGMG-----YSPSTPALAVSSPGYSP---GY 307
G G P + +Y+P SP+Y TSP YSP++P+ + +SP YSP Y
Sbjct: 1537 GYGYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1596
Query: 308 SPTSPSVGARG---GPAAGYASPQSPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFS 475
SPTSPS P + SP SP Y PTSP+Y+ + + YSP+SP+YSP S
Sbjct: 1597 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1656
Query: 476 PNYAAASSPAYQPPS 520
P+Y + +SP+Y P S
Sbjct: 1657 PSY-SPTSPSYSPTS 1670
Score = 101 bits (251), Expect = 4e-20
Identities = 62/152 (40%), Positives = 87/152 (57%), Gaps = 4/152 (2%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP +P SP SP Y+ SP + + + +Y+P SP+Y TSP YS
Sbjct: 1544 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 1590
Query: 257 PSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVA 427
P++P+ + +SP YSP YSPTSPS P + SP SP Y PTSP+Y+ +
Sbjct: 1591 PTSPSYSPTSPSYSPTSPSYSPTSPSY----SPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1646
Query: 428 AAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
+ YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1647 PTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 1677
Score = 101 bits (251), Expect = 4e-20
Identities = 62/152 (40%), Positives = 87/152 (57%), Gaps = 4/152 (2%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP +P SP SP Y+ SP + + + +Y+P SP+Y TSP YS
Sbjct: 1551 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 1597
Query: 257 PSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVA 427
P++P+ + +SP YSP YSPTSPS P + SP SP Y PTSP+Y+ +
Sbjct: 1598 PTSPSYSPTSPSYSPTSPSYSPTSPSY----SPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1653
Query: 428 AAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
+ YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1654 PTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 1684
Score = 100 bits (250), Expect = 5e-20
Identities = 63/154 (40%), Positives = 84/154 (54%), Gaps = 6/154 (3%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP +P SP SP Y+ SP + + + +Y+P SP+Y TSP YS
Sbjct: 1607 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 1653
Query: 257 PSTPALAVSSPGYSP---GYSPTSPSVGARG---GPAAGYASPQSPGYVPTSPAYARPGT 418
P++P+ + +SP YSP YSPTSPS P + SP SP Y PTSP+Y+
Sbjct: 1654 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPQYSPTSPQYSPTSPSYSPTSPSYS---- 1709
Query: 419 VVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
+ YSP+SP YSP SPNY + SP Y+P S
Sbjct: 1710 --PTSPQYSPTSPQYSPRSPNY-SPKSPEYKPKS 1740
Score = 60.1 bits (144), Expect = 9e-08
Identities = 41/111 (36%), Positives = 54/111 (48%), Gaps = 3/111 (2%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP +P SP SP Y+ SP+ Y+P SP Y TSP YS
Sbjct: 1663 SPSYSPT---SPSYSPTSPSYSPTSPQ---------------YSPTSPQYSPTSP--SYS 1702
Query: 257 PSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPA 400
P++P+ + +SP Y SP YSP SP+ SP+SP Y P SP+
Sbjct: 1703 PTSPSYSPTSPQYSPTSPQYSPRSPNY-----------SPKSPEYKPKSPS 1742
[129][TOP]
>UniRef100_A1YIA7 DNA-directed RNA polymerase (Fragment) n=1 Tax=Pichia kudriavzevii
RepID=A1YIA7_ISSOR
Length = 1647
Score = 103 bits (256), Expect = 1e-20
Identities = 66/159 (41%), Positives = 85/159 (53%), Gaps = 8/159 (5%)
Frame = +2
Query: 68 GRMTPGRSPA----GRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMAT 235
G +P P G +P SP SP Y+ SP + + + AY+P SPAY T
Sbjct: 1457 GATSPSYGPTSPSYGPTSPSYSPTSPAYSPTSPAY--------SPTSPAYSPTSPAYSPT 1508
Query: 236 SPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYA 406
SP YSP++PA + +SP YSP YSPTSPS P + SP SP Y PTSP+Y+
Sbjct: 1509 SPA--YSPTSPAYSPTSPAYSPTSPSYSPTSPSYS----PTSPSYSPTSPSYSPTSPSYS 1562
Query: 407 RPGTVVAAANV-YSPSSPAYSPFSPNYAAASSPAYQPPS 520
+ + YSP+SP YSP SP Y + +SP Y P S
Sbjct: 1563 PTSPQYSPTSPQYSPTSPQYSPTSPQY-SPTSPQYSPTS 1600
Score = 102 bits (253), Expect = 2e-20
Identities = 66/158 (41%), Positives = 84/158 (53%), Gaps = 7/158 (4%)
Frame = +2
Query: 68 GRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGM 247
G +P SP +P SP SP Y+ SP + + + AY+P SPAY TSP
Sbjct: 1471 GPTSPSYSPT---SPAYSPTSPAYSPTSPAY--------SPTSPAYSPTSPAYSPTSPA- 1518
Query: 248 GYSPSTPALAVSSPGYSP---GYSPTSPSVGARG---GPAAGYASPQSPGYVPTSPAYAR 409
YSP++PA + +SP YSP YSPTSPS P + SP SP Y PTSP Y+
Sbjct: 1519 -YSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPQYSPTSPQYSP 1577
Query: 410 PGTVVAAANV-YSPSSPAYSPFSPNYAAASSPAYQPPS 520
+ + YSP+SP YSP SP Y + +SP Y P S
Sbjct: 1578 TSPQYSPTSPQYSPTSPQYSPTSPQY-SPTSPQYSPTS 1614
Score = 100 bits (248), Expect = 8e-20
Identities = 64/155 (41%), Positives = 83/155 (53%), Gaps = 7/155 (4%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP +P SP SP Y+ SP + + + AY+P SPAY TSP YS
Sbjct: 1488 SPAYSPT---SPAYSPTSPAYSPTSPAY--------SPTSPAYSPTSPAYSPTSPS--YS 1534
Query: 257 PSTPALAVSSPGYSP---GYSPTSPSVGARG---GPAAGYASPQSPGYVPTSPAYARPGT 418
P++P+ + +SP YSP YSPTSPS P + SP SP Y PTSP Y+
Sbjct: 1535 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPQYSPTSPQYSPTSPQYSPTSPQYSPTSP 1594
Query: 419 VVAAANV-YSPSSPAYSPFSPNYAAASSPAYQPPS 520
+ + YSP+SP YSP SP Y + +SP Y P S
Sbjct: 1595 QYSPTSPQYSPTSPQYSPTSPQY-SPTSPQYSPTS 1628
Score = 98.6 bits (244), Expect = 2e-19
Identities = 63/138 (45%), Positives = 81/138 (58%), Gaps = 5/138 (3%)
Frame = +2
Query: 122 PASP-GYAAMSPRFGGGLGG-GPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 295
P SP GY A SP +G GP + +Y+P SPAY TSP YSP++PA + +SP Y
Sbjct: 1450 PTSPFGYGATSPSYGPTSPSYGPT--SPSYSPTSPAYSPTSPA--YSPTSPAYSPTSPAY 1505
Query: 296 SP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYS 466
SP YSPTSP+ P + SP SP Y PTSP+Y+ + YSP+SP+YS
Sbjct: 1506 SPTSPAYSPTSPAYS----PTSPAYSPTSPSYSPTSPSYS------PTSPSYSPTSPSYS 1555
Query: 467 PFSPNYAAASSPAYQPPS 520
P SP+Y + +SP Y P S
Sbjct: 1556 PTSPSY-SPTSPQYSPTS 1572
Score = 97.1 bits (240), Expect = 7e-19
Identities = 64/173 (36%), Positives = 85/173 (49%), Gaps = 7/173 (4%)
Frame = +2
Query: 23 SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
SP S A T +P +P SP SP Y+ SP + + + +
Sbjct: 1481 SPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAY--------SPTSPS 1532
Query: 203 YAPASPAYMATSPGMGYSPSTPALAVSSPGYSPG---YSPTSPSVGARG---GPAAGYAS 364
Y+P SP+Y TSP YSP++P+ + +SP YSP YSPTSP P + S
Sbjct: 1533 YSPTSPSYSPTSPS--YSPTSPSYSPTSPSYSPTSPQYSPTSPQYSPTSPQYSPTSPQYS 1590
Query: 365 PQSPGYVPTSPAYARPGTVVAAANV-YSPSSPAYSPFSPNYAAASSPAYQPPS 520
P SP Y PTSP Y+ + + YSP+SP YSP SP Y + +SP Y P S
Sbjct: 1591 PTSPQYSPTSPQYSPTSPQYSPTSPQYSPTSPQYSPTSPQY-SPTSPQYSPTS 1642
Score = 90.9 bits (224), Expect = 5e-17
Identities = 57/138 (41%), Positives = 74/138 (53%), Gaps = 5/138 (3%)
Frame = +2
Query: 122 PASPGYAAMSPRFGGGLGGGPAGGAGAYAPAS-PAYMATSPGMGYSPSTPALAVSSPGY- 295
P + A SP G G +GG Y + AY TSP GY ++P+ +SP Y
Sbjct: 1413 PMAADNVAFSPLITAGSGDDRSGGFTEYGSGNMSAYQPTSP-FGYGATSPSYGPTSPSYG 1471
Query: 296 --SPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYS 466
SP YSPTSP+ P + SP SP Y PTSPAY+ + + YSP+SPAYS
Sbjct: 1472 PTSPSYSPTSPAY----SPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYS 1527
Query: 467 PFSPNYAAASSPAYQPPS 520
P SP+Y + +SP+Y P S
Sbjct: 1528 PTSPSY-SPTSPSYSPTS 1544
Score = 90.1 bits (222), Expect = 8e-17
Identities = 59/162 (36%), Positives = 79/162 (48%), Gaps = 7/162 (4%)
Frame = +2
Query: 23 SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
SP S A T +P +P SP SP Y+ SP + + + +
Sbjct: 1495 SPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSY--------SPTSPS 1546
Query: 203 YAPASPAYMATSPGMGYSPSTPALAVSSPGYSPG---YSPTSPSVGARG---GPAAGYAS 364
Y+P SP+Y TSP YSP++P + +SP YSP YSPTSP P + S
Sbjct: 1547 YSPTSPSYSPTSPS--YSPTSPQYSPTSPQYSPTSPQYSPTSPQYSPTSPQYSPTSPQYS 1604
Query: 365 PQSPGYVPTSPAYARPGTVVAAANV-YSPSSPAYSPFSPNYA 487
P SP Y PTSP Y+ + + YSP+SP YSP SP+Y+
Sbjct: 1605 PTSPQYSPTSPQYSPTSPQYSPTSPQYSPTSPQYSPTSPSYS 1646
Score = 83.2 bits (204), Expect = 1e-14
Identities = 56/156 (35%), Positives = 75/156 (48%), Gaps = 7/156 (4%)
Frame = +2
Query: 23 SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
SP S A T +P +P SP SP Y+ SP + + + +
Sbjct: 1502 SPAYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSY--------SPTSPS 1553
Query: 203 YAPASPAYMATSPGMGYSPSTPALAVSSPGYSPG---YSPTSPSVGARG---GPAAGYAS 364
Y+P SP+Y TSP YSP++P + +SP YSP YSPTSP P + S
Sbjct: 1554 YSPTSPSYSPTSPQ--YSPTSPQYSPTSPQYSPTSPQYSPTSPQYSPTSPQYSPTSPQYS 1611
Query: 365 PQSPGYVPTSPAYARPGTVVAAANV-YSPSSPAYSP 469
P SP Y PTSP Y+ + + YSP+SP+YSP
Sbjct: 1612 PTSPQYSPTSPQYSPTSPQYSPTSPQYSPTSPSYSP 1647
[130][TOP]
>UniRef100_P35084 DNA-directed RNA polymerase II subunit rpb1 n=1 Tax=Dictyostelium
discoideum RepID=RPB1_DICDI
Length = 1727
Score = 103 bits (256), Expect = 1e-20
Identities = 65/151 (43%), Positives = 86/151 (56%), Gaps = 3/151 (1%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP +P SP SP Y+ SP F + + +Y+P SP+Y TSP YS
Sbjct: 1578 SPSYSPT---SPSYSPTSPSYSPTSP-FYSPTSPSYSPTSPSYSPTSPSYSPTSPS--YS 1631
Query: 257 PSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVA 427
P++P+ + +SP YSP YSPTSPS P + SP SP Y PTSP+Y+
Sbjct: 1632 PTSPSYSPTSPSYSPTSPSYSPTSPSYS----PTSPSYSPTSPSYSPTSPSYS------P 1681
Query: 428 AANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
+ YSPSSP+YSP SP+Y + SSP+Y P S
Sbjct: 1682 TSPSYSPSSPSYSPSSPSY-SPSSPSYSPSS 1711
Score = 83.6 bits (205), Expect = 8e-15
Identities = 60/166 (36%), Positives = 78/166 (46%), Gaps = 13/166 (7%)
Frame = +2
Query: 62 TPGRMTPGRSPA-GRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAG-----------AY 205
TPG TP S G TP +P + + F G G Y
Sbjct: 1487 TPGSQTPSYSYGDGSTTPFHNPYDAPLSPFNETFRGDFSPSAMNSPGYNANKSYGSSYQY 1546
Query: 206 APASPAYMATSPGMGYSPSTPALAVSSPGYSPGYSPTSPSVGARGGPAAGYASPQSPGYV 385
P SP Y TSP YSP++P+ + +SP YSP TSPS SP SP Y
Sbjct: 1547 FPQSPTYSPTSPS--YSPTSPSYSPTSPSYSP----TSPSY-----------SPTSPSYS 1589
Query: 386 PTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
PTSP+Y+ + + YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1590 PTSPSYSPTSPFYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 1634
Score = 78.2 bits (191), Expect = 3e-13
Identities = 51/140 (36%), Positives = 71/140 (50%), Gaps = 10/140 (7%)
Frame = +2
Query: 77 TPGRSPAGRF----TPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPG 244
+P SP F +P SP SP Y+ SP + + + +Y+P SP+Y TSP
Sbjct: 1592 SPSYSPTSPFYSPTSPSYSPTSPSYSPTSPSYSP-TSPSYSPTSPSYSPTSPSYSPTSPS 1650
Query: 245 MGYSPSTPALAVSSPGYSP---GYSPTSPSVGARG---GPAAGYASPQSPGYVPTSPAYA 406
YSP++P+ + +SP YSP YSPTSPS P++ SP SP Y P+SP+
Sbjct: 1651 --YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYSPSSPSYSPSSPS-- 1706
Query: 407 RPGTVVAAANVYSPSSPAYS 466
YSPSSP ++
Sbjct: 1707 -----------YSPSSPTFT 1715
Score = 56.6 bits (135), Expect = 1e-06
Identities = 49/133 (36%), Positives = 68/133 (51%)
Frame = +2
Query: 122 PASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP 301
P +PG + +P + G G AP SP + T G +SPS A++SPGY+
Sbjct: 1485 PDTPG--SQTPSYSYGDGSTTPFHNPYDAPLSP-FNETFRG-DFSPS----AMNSPGYNA 1536
Query: 302 GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPN 481
S G + Y PQSP Y PTSP+Y+ + YSP+SP+YSP SP+
Sbjct: 1537 NKSY---------GSSYQYF-PQSPTYSPTSPSYS------PTSPSYSPTSPSYSPTSPS 1580
Query: 482 YAAASSPAYQPPS 520
Y + +SP+Y P S
Sbjct: 1581 Y-SPTSPSYSPTS 1592
[131][TOP]
>UniRef100_Q99366 DNA-directed RNA polymerase (Fragment) n=1 Tax=Glycine max
RepID=Q99366_SOYBN
Length = 625
Score = 102 bits (255), Expect = 1e-20
Identities = 70/171 (40%), Positives = 88/171 (51%), Gaps = 22/171 (12%)
Frame = +2
Query: 74 MTPGRSPAGRFTPRMSPASPGY-------------AAMSPRFGGGLGGGPAGGAGAYAPA 214
MTP RSP SP Y A SP + GG+ P G Y+P+
Sbjct: 316 MTPARSPISGTPYHEGLMSPSYLLSPNLRLSPTTDAQFSP-YVGGMAFSPTSSPG-YSPS 373
Query: 215 SPAYMATSPGM-----GYSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQ 370
SP Y +SPG GYSP++P + +SP YSP GYSPTSP+ P + SP
Sbjct: 374 SPGYSPSSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAY----SPTSPSYSPT 429
Query: 371 SPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
SP Y PTSP+Y+ + + YSP+SPAYSP SP Y + +SPAY P S
Sbjct: 430 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAY-SPTSPAYSPTS 479
Score = 100 bits (250), Expect = 5e-20
Identities = 70/185 (37%), Positives = 91/185 (49%), Gaps = 19/185 (10%)
Frame = +2
Query: 23 SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
SP S + T +P +P SP SP Y+ SP + + + A
Sbjct: 416 SPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAY--------SPTSPA 467
Query: 203 YAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVG----ARGGPAAGYA 361
Y+P SPAY TSP YSP++P+ + +SP YSP YSPTSPS A + GY+
Sbjct: 468 YSPTSPAYSPTSPS--YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYS 525
Query: 362 ------SPQSPGYVPTSPAYARPGTVVAAANVYSPSSP------AYSPFSPNYAAASSPA 505
SP SP Y PTSP+Y + + YSPSSP YSP SPNY + +SP+
Sbjct: 526 PTSPSYSPTSPSYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPSSPYSPTSPNY-SPTSPS 584
Query: 506 YQPPS 520
Y P S
Sbjct: 585 YSPTS 589
Score = 94.4 bits (233), Expect = 4e-18
Identities = 66/172 (38%), Positives = 88/172 (51%), Gaps = 6/172 (3%)
Frame = +2
Query: 17 SFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGA 196
S+SP S A +P SP +P SP SP Y+ SP + + +
Sbjct: 446 SYSPTSPSYSPTSPAY-SPTSPAYSPT---SPAYSPTSPSYSPTSPSY--------SPTS 493
Query: 197 GAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARG---GPAAGY 358
+Y+P SP+Y TSP YSP++PA + +SPGYSP YSPTSPS P +
Sbjct: 494 PSYSPTSPSYSPTSPS--YSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYNPQSAK 551
Query: 359 ASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQP 514
SP S Y P+SP + + YSP+SP+YSP SP+Y + SSP Y P
Sbjct: 552 YSP-SLAYSPSSPRLSPSSPYSPTSPNYSPTSPSYSPTSPSY-SPSSPTYSP 601
Score = 73.6 bits (179), Expect = 8e-12
Identities = 49/122 (40%), Positives = 63/122 (51%), Gaps = 6/122 (4%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATS----PG 244
+P SP +P SP SPGY+ SP + + + +Y+P SP+Y S P
Sbjct: 507 SPSYSPT---SPAYSPTSPGYSPTSPSY--------SPTSPSYSPTSPSYNPQSAKYSPS 555
Query: 245 MGYSPSTPALAVSSP--GYSPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGT 418
+ YSPS+P L+ SSP SP YSPTSPS SP SP Y P+SP Y+ T
Sbjct: 556 LAYSPSSPRLSPSSPYSPTSPNYSPTSPSY-----------SPTSPSYSPSSPTYSPSRT 604
Query: 419 VV 424
VV
Sbjct: 605 VV 606
[132][TOP]
>UniRef100_Q9XZS1 DNA-directed RNA polymerase n=1 Tax=Drosophila guanche
RepID=Q9XZS1_DROGU
Length = 1889
Score = 102 bits (255), Expect = 1e-20
Identities = 71/201 (35%), Positives = 96/201 (47%), Gaps = 29/201 (14%)
Frame = +2
Query: 5 NATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGG-- 178
+ + S+SP + A+ +PG +P SP+ +P SP SP YAA SPR+
Sbjct: 1574 SVSPSYSPTSPNYTAS---SPGGASPNYSPS---SPNYSPTSPLYAAPSPRYASTTPNFN 1627
Query: 179 ----GPAGGAGAYAPASPAYMATS-----------------PGMGYSPSTPALAVSSPGY 295
G + A Y+P SP Y TS PG YSPS+ + +SP Y
Sbjct: 1628 PQSTGYSPSASGYSPTSPVYSPTSNFPSSPSFAGSGSNMYSPGNAYSPSSTNYSPNSPSY 1687
Query: 296 SP---GYSPTSPSVGARG---GPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSP 457
SP YSP+SPS P + SP SP Y P +P+Y+ +A+ YSP+SP
Sbjct: 1688 SPTSPSYSPSSPSYSPTSPCYSPTSPSYSPTSPNYTPATPSYSPTSPNYSASPHYSPASP 1747
Query: 458 AYSPFSPNYAAASSPAYQPPS 520
AYS Y + +SP Y PPS
Sbjct: 1748 AYSQTGAKY-SPTSPTYSPPS 1767
Score = 97.8 bits (242), Expect = 4e-19
Identities = 67/176 (38%), Positives = 88/176 (50%), Gaps = 5/176 (2%)
Frame = +2
Query: 8 ATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPA 187
AT S+SP + A+ +P +P S G + SP SP Y+ SP + G +
Sbjct: 1725 ATPSYSPTSPNYSASPHYSPA--SPAYSQTGA---KYSPTSPTYSPPSPSYDG------S 1773
Query: 188 GGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSPG--YSPTSPSVGA---RGGPAA 352
G+ Y P SP Y SP YSP++P + SSP +SP YSPT + A R P
Sbjct: 1774 PGSPQYTPGSPQYSPASPK--YSPTSPLYSPSSPQHSPSNQYSPTGSTYSATSPRYSPNM 1831
Query: 353 GYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
SP S Y PTSP Y A YSP+SP YSP +P++ + +SPAY P S
Sbjct: 1832 SIYSPSSTKYSPTSPTYT------PTARNYSPTSPMYSPTAPSHYSPTSPAYSPSS 1881
Score = 83.6 bits (205), Expect = 8e-15
Identities = 59/166 (35%), Positives = 79/166 (47%), Gaps = 18/166 (10%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMG-- 250
+P SP+ +P SP SP Y+ SP + + + Y PA+P+Y TSP
Sbjct: 1691 SPSYSPS---SPSYSPTSPCYSPTSPSY--------SPTSPNYTPATPSYSPTSPNYSAS 1739
Query: 251 --YSPSTPALAVSSPGYSPG---YSPTSPSVGARGG-----PAAGYASPQSPGYVPTSPA 400
YSP++PA + + YSP YSP SPS G P + SP SP Y PTSP
Sbjct: 1740 PHYSPASPAYSQTGAKYSPTSPTYSPPSPSYDGSPGSPQYTPGSPQYSPASPKYSPTSPL 1799
Query: 401 YARPGTVVAAANVYSPSSPAYSPFSPNYA------AASSPAYQPPS 520
Y+ + +N YSP+ YS SP Y+ + SS Y P S
Sbjct: 1800 YSPSSPQHSPSNQYSPTGSTYSATSPRYSPNMSIYSPSSTKYSPTS 1845
Score = 77.8 bits (190), Expect = 4e-13
Identities = 63/181 (34%), Positives = 82/181 (45%), Gaps = 27/181 (14%)
Frame = +2
Query: 53 GRATPGRMTPGRSP-AGRFTPRMSPASPGYAAMSP---RFGGGLGGGPAGGAGAYAPASP 220
G +TP MTP +P TPR +AM+P F +G + +++PA P
Sbjct: 1496 GGSTPS-MTPPMTPWVNCNTPRYFSPPGHVSAMTPGGPSFSPSAASDASGMSPSWSPAHP 1554
Query: 221 AYMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYASPQSPGYVPT 391
+SP SP PA SP Y SP Y+ +SP GG + Y SP SP Y PT
Sbjct: 1555 GSSPSSPAPSMSPYYPASPSVSPSYSPTSPNYTASSP-----GGASPNY-SPSSPNYSPT 1608
Query: 392 SPAYARPGTVVA---------------AANVYSPSSPAYS-----PFSPNYAAASSPAYQ 511
SP YA P A +A+ YSP+SP YS P SP++A + S Y
Sbjct: 1609 SPLYAAPSPRYASTTPNFNPQSTGYSPSASGYSPTSPVYSPTSNFPSSPSFAGSGSNMYS 1668
Query: 512 P 514
P
Sbjct: 1669 P 1669
Score = 66.6 bits (161), Expect = 1e-09
Identities = 49/131 (37%), Positives = 65/131 (49%), Gaps = 4/131 (3%)
Frame = +2
Query: 23 SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
SP + + + TPG +P SPA +P+ SP SP Y+ SP+ P G
Sbjct: 1767 SPSYDGSPGSPQYTPG--SPQYSPA---SPKYSPTSPLYSPSSPQHSPSNQYSPTGST-- 1819
Query: 203 YAPASPAYMATSPGMG-YSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQ 370
Y+ SP Y SP M YSPS+ + +SP Y+P YSPTSP A + SP
Sbjct: 1820 YSATSPRY---SPNMSIYSPSSTKYSPTSPTYTPTARNYSPTSPMYSPT---APSHYSPT 1873
Query: 371 SPGYVPTSPAY 403
SP Y P+SP +
Sbjct: 1874 SPAYSPSSPTF 1884
[133][TOP]
>UniRef100_Q7Q3C6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Anopheles gambiae
RepID=Q7Q3C6_ANOGA
Length = 1878
Score = 102 bits (255), Expect = 1e-20
Identities = 72/183 (39%), Positives = 94/183 (51%), Gaps = 15/183 (8%)
Frame = +2
Query: 17 SFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGG----LGGGP 184
SFSP S DA+G + P +P R P MSP P +MSP + P
Sbjct: 1526 SFSPSAQS-DASGMS-PSSWSPIRGSPSSPGPSMSPYPPSSPSMSPSYSPSSPNYAPNSP 1583
Query: 185 AGGAGAYAPASPAYMATSP-----GMGYSPSTPALAVSSPGY---SPGYSPTSP--SVGA 334
G + +Y+P SP Y SP YSPS+P + ++ Y SP YSP SP A
Sbjct: 1584 GGASPSYSPTSPGYSPPSPQYSPGSSNYSPSSPNIHSATQNYSPTSPSYSPMSPMHPTSA 1643
Query: 335 RGGPAAGYASPQSPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQ 511
+ GY SP SP Y PTSP+Y+ V + + YSPSSP+YSP SP+Y + +SP+Y
Sbjct: 1644 SNFASPGY-SPTSPSYSPTSPSYSPSSPVFSPTSPSYSPSSPSYSPTSPSY-SPTSPSYS 1701
Query: 512 PPS 520
P S
Sbjct: 1702 PTS 1704
Score = 100 bits (248), Expect = 8e-20
Identities = 67/179 (37%), Positives = 90/179 (50%), Gaps = 7/179 (3%)
Frame = +2
Query: 5 NATASFSPIMSSADAAGRATPGRMT----PGRSPAGRFTPRMSPASPGYAAMSPRFGGGL 172
+AT ++SP S P + PG SP +P SP SP Y+ SP F
Sbjct: 1620 SATQNYSPTSPSYSPMSPMHPTSASNFASPGYSPT---SPSYSPTSPSYSPSSPVFSP-T 1675
Query: 173 GGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSPG---YSPTSPSVGARGG 343
+ + +Y+P SP+Y TSP YSP++P +P YSP YSPTSP
Sbjct: 1676 SPSYSPSSPSYSPTSPSYSPTSPS--YSPTSPNFTPVTPSYSPSSPNYSPTSPHYS---- 1729
Query: 344 PAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
PA+ SP SP Y PTSP+Y+ + Y+P+SP Y SPNY + +SP+Y P S
Sbjct: 1730 PASPSYSPSSPKYSPTSPSYSPTSPSYIGSPHYTPASPQYGQASPNY-SPTSPSYSPSS 1787
Score = 83.6 bits (205), Expect = 8e-15
Identities = 66/185 (35%), Positives = 87/185 (47%), Gaps = 29/185 (15%)
Frame = +2
Query: 17 SFSPIMSS-ADAAGRATPGRMTPGRSPAGR----FTPRMSPASPGYAAMSPRFGGGLGG- 178
S+SP S + + TP +TP SP+ +P SPASP Y+ SP++
Sbjct: 1692 SYSPTSPSYSPTSPNFTP--VTPSYSPSSPNYSPTSPHYSPASPSYSPSSPKYSPTSPSY 1749
Query: 179 GPAG----GAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSPGYSPTSPSVGARG-- 340
P G+ Y PASP Y SP YSP++P+ + SSP +SPG S S+G+
Sbjct: 1750 SPTSPSYIGSPHYTPASPQYGQASPN--YSPTSPSYSPSSPQHSPGSSSNHYSIGSSSYS 1807
Query: 341 ------GPAAGYASPQSPGYVPTSPAYARPGTVVAAANV--------YSPSSPA---YSP 469
P SP SP Y PTSP Y + ++ YSPSSPA YSP
Sbjct: 1808 QTPAPYSPNMSSYSPSSPKYSPTSPVYTSSSPTYSPSSPAYSPTPQGYSPSSPASPTYSP 1867
Query: 470 FSPNY 484
SP+Y
Sbjct: 1868 TSPSY 1872
Score = 82.4 bits (202), Expect = 2e-14
Identities = 55/155 (35%), Positives = 77/155 (49%), Gaps = 7/155 (4%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAG-----GAGAYAPASPAYMATSP 241
+P SP+ +P+ SP SP Y+ SP + G PA + Y+P SP+Y +SP
Sbjct: 1732 SPSYSPS---SPKYSPTSPSYSPTSPSYIGSPHYTPASPQYGQASPNYSPTSPSYSPSSP 1788
Query: 242 GMGYSPSTPALAVSSPGYSPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTV 421
S+ ++ S YS +P SP++ + SP SP Y PTSP Y
Sbjct: 1789 QHSPGSSSNHYSIGSSSYSQTPAPYSPNMSS--------YSPSSPKYSPTSPVY------ 1834
Query: 422 VAAANVYSPSSPAYSPFSPNYAAAS--SPAYQPPS 520
+++ YSPSSPAYSP Y+ +S SP Y P S
Sbjct: 1835 TSSSPTYSPSSPAYSPTPQGYSPSSPASPTYSPTS 1869
Score = 71.2 bits (173), Expect = 4e-11
Identities = 56/149 (37%), Positives = 68/149 (45%), Gaps = 3/149 (2%)
Frame = +2
Query: 83 GRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPA-SPAYMATSPGMGYSP 259
G + TP A+PGY SP GPA G P+ SP+ + + GM S
Sbjct: 1490 GSAATPSMTPWQQSATPGYGGWSP-------SGPASGMTPGGPSFSPSAQSDASGMSPSS 1542
Query: 260 STPAL-AVSSPGYSPG-YSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVAAA 433
+P + SSPG S Y P+SPS+ SP SP Y P SP A P
Sbjct: 1543 WSPIRGSPSSPGPSMSPYPPSSPSMSPS-------YSPSSPNYAPNSPGGASPS------ 1589
Query: 434 NVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
YSP+SP YSP SP Y+ SS Y P S
Sbjct: 1590 --YSPTSPGYSPPSPQYSPGSS-NYSPSS 1615
[134][TOP]
>UniRef100_B4H2R8 DNA-directed RNA polymerase n=1 Tax=Drosophila persimilis
RepID=B4H2R8_DROPE
Length = 1804
Score = 102 bits (255), Expect = 1e-20
Identities = 71/197 (36%), Positives = 94/197 (47%), Gaps = 29/197 (14%)
Frame = +2
Query: 17 SFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGG------ 178
S+SP + A+ +PG +P SP+ +P SP SP YAA SPR+
Sbjct: 1512 SYSPTSPNYTAS---SPGGASPNYSPS---SPNYSPTSPLYAAASPRYASTTPNFNPQST 1565
Query: 179 GPAGGAGAYAPASPAYMATS-----------------PGMGYSPSTPALAVSSPGYSP-- 301
G + A Y+P SP Y TS PG YSPS+ + +SP YSP
Sbjct: 1566 GYSPSASGYSPTSPVYSPTSNFPSSPSFAGSGSNMYSPGNAYSPSSTNYSPNSPSYSPTS 1625
Query: 302 -GYSPTSPSVGARG---GPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSP 469
YSP+SPS P + SP SP Y P +P+Y+ +A+ YSP+SPAYS
Sbjct: 1626 PSYSPSSPSYSPTSPCYSPTSPSYSPTSPNYTPATPSYSPTSPNYSASPHYSPASPAYSQ 1685
Query: 470 FSPNYAAASSPAYQPPS 520
Y + +SP Y PPS
Sbjct: 1686 TGAKY-SPTSPTYSPPS 1701
Score = 98.2 bits (243), Expect = 3e-19
Identities = 66/177 (37%), Positives = 86/177 (48%), Gaps = 31/177 (17%)
Frame = +2
Query: 83 GRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSP-----GM 247
G +P+ TP M+P SP Y+ SP + P G + Y+P+SP Y TSP
Sbjct: 1497 GSTPS--MTPPMTPVSPSYSPTSPNY---TASSPGGASPNYSPSSPNYSPTSPLYAAASP 1551
Query: 248 GYSPSTPALAVSSPGYSP---GYSPTSP----------------------SVGARGGPAA 352
Y+ +TP S GYSP GYSPTSP S G P++
Sbjct: 1552 RYASTTPNFNPQSTGYSPSASGYSPTSPVYSPTSNFPSSPSFAGSGSNMYSPGNAYSPSS 1611
Query: 353 GYASPQSPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
SP SP Y PTSP+Y+ + + YSP+SP+YSP SPNY A +P+Y P S
Sbjct: 1612 TNYSPNSPSYSPTSPSYSPSSPSYSPTSPCYSPTSPSYSPTSPNYTPA-TPSYSPTS 1667
Score = 83.6 bits (205), Expect = 8e-15
Identities = 59/166 (35%), Positives = 79/166 (47%), Gaps = 18/166 (10%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMG-- 250
+P SP+ +P SP SP Y+ SP + + + Y PA+P+Y TSP
Sbjct: 1625 SPSYSPS---SPSYSPTSPCYSPTSPSY--------SPTSPNYTPATPSYSPTSPNYSAS 1673
Query: 251 --YSPSTPALAVSSPGYSPG---YSPTSPSVGARGG-----PAAGYASPQSPGYVPTSPA 400
YSP++PA + + YSP YSP SPS G P + SP SP Y PTSP
Sbjct: 1674 PHYSPASPAYSQTGAKYSPTSPTYSPPSPSYDGSPGSPQYTPGSPQYSPASPKYSPTSPL 1733
Query: 401 YARPGTVVAAANVYSPSSPAYSPFSPNYA------AASSPAYQPPS 520
Y+ + +N YSP+ YS SP Y+ + SS Y P S
Sbjct: 1734 YSPSSPQHSPSNQYSPTGSTYSATSPRYSPNMSIYSPSSTKYSPTS 1779
Score = 79.3 bits (194), Expect = 1e-13
Identities = 59/167 (35%), Positives = 80/167 (47%), Gaps = 19/167 (11%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP +P +PA+P Y+ SP + + Y+PASPAY T G YS
Sbjct: 1646 SPSYSPT---SPNYTPATPSYSPTSPNYSA---------SPHYSPASPAYSQT--GAKYS 1691
Query: 257 PSTPALAVSSPGY-----SPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPA------Y 403
P++P + SP Y SP Y+P SP PA+ SP SP Y P+SP Y
Sbjct: 1692 PTSPTYSPPSPSYDGSPGSPQYTPGSPQYS----PASPKYSPTSPLYSPSSPQHSPSNQY 1747
Query: 404 ARPGTVVAAAN--------VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
+ G+ +A + +YSPSS YSP SP Y ++ Y P S
Sbjct: 1748 SPTGSTYSATSPRYSPNMSIYSPSSTKYSPTSPTY-TPTARNYSPTS 1793
Score = 70.9 bits (172), Expect = 5e-11
Identities = 56/153 (36%), Positives = 71/153 (46%), Gaps = 33/153 (21%)
Frame = +2
Query: 161 GGGLGGGPAG--GAGAYAPASPAYMATSPGMGYSPSTPALAVSSPG--------YSPGYS 310
G + GG A G G+ +P SP YSP++P SSPG SP YS
Sbjct: 1483 GSSMLGGTAMFIGGGSTPSMTPPMTPVSPS--YSPTSPNYTASSPGGASPNYSPSSPNYS 1540
Query: 311 PTSPSVGARG-----------------GPAAGYASPQSPGYVPT-----SPAYARPGT-V 421
PTSP A P+A SP SP Y PT SP++A G+ +
Sbjct: 1541 PTSPLYAAASPRYASTTPNFNPQSTGYSPSASGYSPTSPVYSPTSNFPSSPSFAGSGSNM 1600
Query: 422 VAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
+ N YSPSS YSP SP+Y + +SP+Y P S
Sbjct: 1601 YSPGNAYSPSSTNYSPNSPSY-SPTSPSYSPSS 1632
[135][TOP]
>UniRef100_Q75A34 DNA-directed RNA polymerase II subunit RPB1 n=1 Tax=Eremothecium
gossypii RepID=RPB1_ASHGO
Length = 1745
Score = 102 bits (255), Expect = 1e-20
Identities = 63/151 (41%), Positives = 87/151 (57%), Gaps = 3/151 (1%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+PG SP +P SP SP Y+ SP + + + +Y+P SP+Y TSP YS
Sbjct: 1542 SPGFSPT---SPAYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 1588
Query: 257 PSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVA 427
P++P+ + +SP YSP YSPTSPS P + SP SP Y PTSP+Y+
Sbjct: 1589 PTSPSYSPTSPSYSPTSPSYSPTSPSYS----PTSPSYSPTSPSYSPTSPSYS------P 1638
Query: 428 AANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
+ YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1639 TSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 1668
Score = 102 bits (253), Expect = 2e-20
Identities = 65/170 (38%), Positives = 90/170 (52%), Gaps = 4/170 (2%)
Frame = +2
Query: 23 SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
SP S A T +P +P SP SP Y+ SP + + + +
Sbjct: 1542 SPGFSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY--------SPTSPS 1593
Query: 203 YAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQS 373
Y+P SP+Y TSP YSP++P+ + +SP YSP YSPTSPS P + SP S
Sbjct: 1594 YSPTSPSYSPTSPS--YSPTSPSYSPTSPSYSPTSPSYSPTSPSYS----PTSPSYSPTS 1647
Query: 374 PGYVPTSPAYARPGTVVAAANV-YSPSSPAYSPFSPNYAAASSPAYQPPS 520
P Y PTSP+Y+ + + YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1648 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 1696
Score = 101 bits (252), Expect = 3e-20
Identities = 67/171 (39%), Positives = 93/171 (54%), Gaps = 4/171 (2%)
Frame = +2
Query: 20 FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAG 199
FSP++ + + A+ G G + G T S G SP FG G + +
Sbjct: 1493 FSPLVEAGTSDAIASGGFTAYGGADYGGATSPFS--GYGNGPTSPGFGDVSSPGFSPTSP 1550
Query: 200 AYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQ 370
AY+P SP+Y TSP YSP++P+ + +SP YSP YSPTSPS P + SP
Sbjct: 1551 AYSPTSPSYSPTSPS--YSPTSPSYSPTSPSYSPTSPSYSPTSPSYS----PTSPSYSPT 1604
Query: 371 SPGYVPTSPAYARPGTVVAAANV-YSPSSPAYSPFSPNYAAASSPAYQPPS 520
SP Y PTSP+Y+ + + YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1605 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 1654
Score = 101 bits (251), Expect = 4e-20
Identities = 62/152 (40%), Positives = 87/152 (57%), Gaps = 4/152 (2%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP +P SP SP Y+ SP + + + +Y+P SP+Y TSP YS
Sbjct: 1577 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 1623
Query: 257 PSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVA 427
P++P+ + +SP YSP YSPTSPS P + SP SP Y PTSP+Y+ +
Sbjct: 1624 PTSPSYSPTSPSYSPTSPSYSPTSPSYS----PTSPSYSPTSPSYSPTSPSYSPTSPSYS 1679
Query: 428 AANV-YSPSSPAYSPFSPNYAAASSPAYQPPS 520
+ YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1680 PTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 1710
Score = 100 bits (248), Expect = 8e-20
Identities = 62/152 (40%), Positives = 86/152 (56%), Gaps = 4/152 (2%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP +P SP SP Y+ SP + + + +Y+P SP+Y TSP YS
Sbjct: 1591 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 1637
Query: 257 PSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVA 427
P++P+ + +SP YSP YSPTSPS P + SP SP Y PTSP+Y+ +
Sbjct: 1638 PTSPSYSPTSPSYSPTSPSYSPTSPSYS----PTSPSYSPTSPSYSPTSPSYSPTSPSYS 1693
Query: 428 AANV-YSPSSPAYSPFSPNYAAASSPAYQPPS 520
+ YSP+SP+YSP SP+Y + +SP Y P S
Sbjct: 1694 PTSPSYSPTSPSYSPTSPSY-SPTSPQYSPRS 1724
Score = 93.6 bits (231), Expect = 8e-18
Identities = 57/141 (40%), Positives = 79/141 (56%), Gaps = 4/141 (2%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP +P SP SP Y+ SP + + + +Y+P SP+Y TSP YS
Sbjct: 1605 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 1651
Query: 257 PSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVA 427
P++P+ + +SP YSP YSPTSPS P + SP SP Y PTSP+Y+ +
Sbjct: 1652 PTSPSYSPTSPSYSPTSPSYSPTSPSYS----PTSPSYSPTSPSYSPTSPSYSPTSPSYS 1707
Query: 428 AANV-YSPSSPAYSPFSPNYA 487
+ YSP+SP YSP SP+Y+
Sbjct: 1708 PTSPSYSPTSPQYSPRSPSYS 1728
Score = 78.2 bits (191), Expect = 3e-13
Identities = 52/134 (38%), Positives = 67/134 (50%), Gaps = 3/134 (2%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP +P SP SP Y+ SP + + + +Y+P SP+Y TSP YS
Sbjct: 1633 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 1679
Query: 257 PSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVA 427
P++P+ + +SP YSP YSPTSPS SP SP Y PTSP
Sbjct: 1680 PTSPSYSPTSPSYSPTSPSYSPTSPSY-----------SPTSPSYSPTSPQ--------- 1719
Query: 428 AANVYSPSSPAYSP 469
YSP SP+YSP
Sbjct: 1720 ----YSPRSPSYSP 1729
Score = 77.0 bits (188), Expect = 7e-13
Identities = 63/159 (39%), Positives = 78/159 (49%), Gaps = 8/159 (5%)
Frame = +2
Query: 68 GRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPA-GGAGAYAPASPAYMATSPG 244
G TP S AG ++ SP G A GG AY A ATSP
Sbjct: 1469 GGATPYNSDAGLVNTKVDIKDE--LMFSPLVEAGTSDAIASGGFTAYGGADYGG-ATSPF 1525
Query: 245 MGYS--PSTPALA-VSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYA 406
GY P++P VSSPG+SP YSPTSPS SP SP Y PTSP+Y+
Sbjct: 1526 SGYGNGPTSPGFGDVSSPGFSPTSPAYSPTSPSY-----------SPTSPSYSPTSPSYS 1574
Query: 407 RPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
+ + YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1575 PTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 1612
[136][TOP]
>UniRef100_B0XMU6 DNA-directed RNA polymerase n=2 Tax=Aspergillus fumigatus
RepID=B0XMU6_ASPFC
Length = 1750
Score = 102 bits (254), Expect = 2e-20
Identities = 71/183 (38%), Positives = 98/183 (53%), Gaps = 13/183 (7%)
Frame = +2
Query: 11 TASFSPIMSSADAAGRATPGRMT-PGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPA 187
T+S+SP ++ G +P MT PG SPA +P +P SP Y+ SP +G P+
Sbjct: 1583 TSSYSP---TSPGMGITSPRFMTSPGFSPA---SPSFAPTSPAYSPTSPAYGQASPTSPS 1636
Query: 188 GGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARG------ 340
Y+P SP + TSP YSP++P+ + +SP +SP YSPTSP++G G
Sbjct: 1637 -----YSPTSPGFSPTSPN--YSPTSPSFSPASPAFSPTSPSYSPTSPAIGGAGRHLSPT 1689
Query: 341 GPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYS---PSSPAYSPFSPNYAAASSPAYQ 511
P + +P SPG+ PTSP P + A + S P+SP YSP SP A SP+Y
Sbjct: 1690 SPTSPKYTPTSPGWSPTSPQTYSPTSPNFAGSPTSPGGPTSPGYSPTSP----AFSPSYV 1745
Query: 512 PPS 520
P S
Sbjct: 1746 PSS 1748
Score = 99.0 bits (245), Expect = 2e-19
Identities = 67/171 (39%), Positives = 87/171 (50%), Gaps = 4/171 (2%)
Frame = +2
Query: 20 FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAG 199
FSP +S ++P P SP T SP SPG SPRF G PA +
Sbjct: 1555 FSPAATSPAGYSPSSPFSANP-TSPGYSPTSSYSPTSPGMGITSPRFMTSPGFSPA--SP 1611
Query: 200 AYAPASPAYMATSPGMGY-SPSTPALAVSSPGYSPGYSPTSPSVGARG---GPAAGYASP 367
++AP SPAY TSP G SP++P+ + +SPG+SP TSP+ PA+ SP
Sbjct: 1612 SFAPTSPAYSPTSPAYGQASPTSPSYSPTSPGFSP----TSPNYSPTSPSFSPASPAFSP 1667
Query: 368 QSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
SP Y PTSPA G ++ SP+SP Y+P SP ++ S Y P S
Sbjct: 1668 TSPSYSPTSPAIGGAGRHLSPT---SPTSPKYTPTSPGWSPTSPQTYSPTS 1715
Score = 75.5 bits (184), Expect = 2e-12
Identities = 62/143 (43%), Positives = 74/143 (51%), Gaps = 9/143 (6%)
Frame = +2
Query: 119 SPASPGYAAMSPRFGGGLGGGPAGG-AGAYAPASPAYMATSPGMGYSPSTPALA-VSSPG 292
S SP A + GG P GG G ++PA ATSP GYSPS+P A +SPG
Sbjct: 1526 SAFSPIRQAGAESPGGFTEYQPTGGFGGGFSPA-----ATSPA-GYSPSSPFSANPTSPG 1579
Query: 293 YSP--GYSPTSPSVGARGGPAAGYASPQ---SPGYVPTSPAYARPGTVVAAANVYSPSSP 457
YSP YSPTSP +G SP+ SPG+ P SP++A P+SP
Sbjct: 1580 YSPTSSYSPTSPGMGI--------TSPRFMTSPGFSPASPSFA-------------PTSP 1618
Query: 458 AYSPFSPNYAAAS--SPAYQPPS 520
AYSP SP Y AS SP+Y P S
Sbjct: 1619 AYSPTSPAYGQASPTSPSYSPTS 1641
[137][TOP]
>UniRef100_A1D1U9 DNA-directed RNA polymerase n=1 Tax=Neosartorya fischeri NRRL 181
RepID=A1D1U9_NEOFI
Length = 1750
Score = 102 bits (254), Expect = 2e-20
Identities = 71/183 (38%), Positives = 98/183 (53%), Gaps = 13/183 (7%)
Frame = +2
Query: 11 TASFSPIMSSADAAGRATPGRMT-PGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPA 187
T+S+SP ++ G +P MT PG SPA +P +P SP Y+ SP +G P+
Sbjct: 1583 TSSYSP---TSPGMGITSPRFMTSPGFSPA---SPSFAPTSPAYSPTSPAYGQASPTSPS 1636
Query: 188 GGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARG------ 340
Y+P SP + TSP YSP++P+ + +SP +SP YSPTSP++G G
Sbjct: 1637 -----YSPTSPGFSPTSPN--YSPTSPSFSPASPAFSPTSPSYSPTSPAIGGAGRHLSPT 1689
Query: 341 GPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYS---PSSPAYSPFSPNYAAASSPAYQ 511
P + +P SPG+ PTSP P + A + S P+SP YSP SP A SP+Y
Sbjct: 1690 SPTSPKYTPTSPGWSPTSPQTYSPTSPNFAGSPTSPGGPTSPGYSPTSP----AFSPSYV 1745
Query: 512 PPS 520
P S
Sbjct: 1746 PSS 1748
Score = 99.0 bits (245), Expect = 2e-19
Identities = 67/171 (39%), Positives = 87/171 (50%), Gaps = 4/171 (2%)
Frame = +2
Query: 20 FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAG 199
FSP +S ++P P SP T SP SPG SPRF G PA +
Sbjct: 1555 FSPAATSPAGYSPSSPFSANP-TSPGYSPTSSYSPTSPGMGITSPRFMTSPGFSPA--SP 1611
Query: 200 AYAPASPAYMATSPGMGY-SPSTPALAVSSPGYSPGYSPTSPSVGARG---GPAAGYASP 367
++AP SPAY TSP G SP++P+ + +SPG+SP TSP+ PA+ SP
Sbjct: 1612 SFAPTSPAYSPTSPAYGQASPTSPSYSPTSPGFSP----TSPNYSPTSPSFSPASPAFSP 1667
Query: 368 QSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
SP Y PTSPA G ++ SP+SP Y+P SP ++ S Y P S
Sbjct: 1668 TSPSYSPTSPAIGGAGRHLSPT---SPTSPKYTPTSPGWSPTSPQTYSPTS 1715
Score = 75.5 bits (184), Expect = 2e-12
Identities = 62/143 (43%), Positives = 74/143 (51%), Gaps = 9/143 (6%)
Frame = +2
Query: 119 SPASPGYAAMSPRFGGGLGGGPAGG-AGAYAPASPAYMATSPGMGYSPSTPALA-VSSPG 292
S SP A + GG P GG G ++PA ATSP GYSPS+P A +SPG
Sbjct: 1526 SAFSPIRQAGAESPGGFTEYQPTGGFGGGFSPA-----ATSPA-GYSPSSPFSANPTSPG 1579
Query: 293 YSP--GYSPTSPSVGARGGPAAGYASPQ---SPGYVPTSPAYARPGTVVAAANVYSPSSP 457
YSP YSPTSP +G SP+ SPG+ P SP++A P+SP
Sbjct: 1580 YSPTSSYSPTSPGMGI--------TSPRFMTSPGFSPASPSFA-------------PTSP 1618
Query: 458 AYSPFSPNYAAAS--SPAYQPPS 520
AYSP SP Y AS SP+Y P S
Sbjct: 1619 AYSPTSPAYGQASPTSPSYSPTS 1641
[138][TOP]
>UniRef100_Q99367 DNA-directed RNA polymerase (Fragment) n=1 Tax=Glycine max
RepID=Q99367_SOYBN
Length = 494
Score = 101 bits (252), Expect = 3e-20
Identities = 71/172 (41%), Positives = 92/172 (53%), Gaps = 23/172 (13%)
Frame = +2
Query: 74 MTPGRSPA-------GRFTP--------RMSPASPGYAAMSPRFGGGLGGGPAGGAGAYA 208
MTP RSP G +P R+SP S A SP + GG+ P G Y+
Sbjct: 156 MTPARSPISGTPYHEGLMSPSYLLSPNLRLSPTSD--AQFSP-YVGGMAFSPTSSPG-YS 211
Query: 209 PASPAYMATSPGM-----GYSPSTPALAVSSPGYSPG---YSPTSPSVGARGGPAAGYAS 364
P+SP Y +SPG GYSP++P + +SPGYSP YSP+SP P + S
Sbjct: 212 PSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGY----SPTSPAYS 267
Query: 365 PQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
P SP Y PTSP+Y+ + YSP+SP+YSP SP+Y + +SPAY P S
Sbjct: 268 PTSPSYSPTSPSYS------PTSPSYSPTSPSYSPTSPSY-SPTSPAYSPTS 312
Score = 100 bits (250), Expect = 5e-20
Identities = 71/185 (38%), Positives = 91/185 (49%), Gaps = 19/185 (10%)
Frame = +2
Query: 23 SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
SP S A T +P +P SP SP Y+ SP + + + A
Sbjct: 256 SPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY--------SPTSPA 307
Query: 203 YAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVG----ARGGPAAGYA 361
Y+P SPAY TSP YSP++P+ + +SP YSP YSPTSPS A + GY+
Sbjct: 308 YSPTSPAYSPTSPS--YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYS 365
Query: 362 ------SPQSPGYVPTSPAYARPGTVVAAANVYSPSSP------AYSPFSPNYAAASSPA 505
SP SP Y PTSP+Y + + YSPSSP YSP SPNY + +SP+
Sbjct: 366 PTSPSYSPTSPSYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPSSPYSPTSPNY-SPTSPS 424
Query: 506 YQPPS 520
Y P S
Sbjct: 425 YSPTS 429
Score = 97.1 bits (240), Expect = 7e-19
Identities = 67/173 (38%), Positives = 87/173 (50%), Gaps = 25/173 (14%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP +P SP SP Y+ SP + + + +Y+P SP+Y TSP YS
Sbjct: 305 SPAYSPT---SPAYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 351
Query: 257 PSTPALAVSSPGYSP----------GYSPTSPSVG---ARGGPAAGYA------------ 361
P++PA + +SPGYSP YSPTSPS A+ P+ Y+
Sbjct: 352 PTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPSSPY 411
Query: 362 SPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
SP SP Y PTSP+Y+ + YSPSSP YSP SP Y + SP Y P S
Sbjct: 412 SPTSPNYSPTSPSYS------PTSPSYSPSSPTYSPSSP-YNSGVSPDYSPSS 457
Score = 88.6 bits (218), Expect = 2e-16
Identities = 62/194 (31%), Positives = 87/194 (44%), Gaps = 30/194 (15%)
Frame = +2
Query: 23 SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
SP S A T +P +P SP SP Y+ SP + + + +
Sbjct: 298 SPSYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSY--------SPTSPS 349
Query: 203 YAPASPAYMATSPGMG-----YSPSTPALAVSSPGYSP---------GYSPTSPSVGARG 340
Y+P SPAY TSPG YSP++P+ + +SP Y+P YSP+SP +
Sbjct: 350 YSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPSS 409
Query: 341 --GPAAGYASPQSPGYVPTSPAYARPGTVVAAANVY--------SPSSP------AYSPF 472
P + SP SP Y PTSP+Y+ + ++ Y SPSSP YSP
Sbjct: 410 PYSPTSPNYSPTSPSYSPTSPSYSPSSPTYSPSSPYNSGVSPDYSPSSPQFSPSTGYSPS 469
Query: 473 SPNYAAASSPAYQP 514
P Y+ +S+ Y P
Sbjct: 470 QPGYSPSSTSQYTP 483
Score = 73.2 bits (178), Expect = 1e-11
Identities = 54/148 (36%), Positives = 71/148 (47%), Gaps = 14/148 (9%)
Frame = +2
Query: 17 SFSPIMSSADAAGRATPGRM--TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAG 190
S+SP ++ A +PG +P SP +P SP SP Y S ++ L P+
Sbjct: 349 SYSP---TSPAYSPTSPGYSPTSPSYSPT---SPSYSPTSPSYNPQSAKYSPSLAYSPSS 402
Query: 191 G----AGAYAPASPAYMATSPGMG-----YSPSTPALAVSSP---GYSPGYSPTSPSVGA 334
+ Y+P SP Y TSP YSPS+P + SSP G SP YSP+SP
Sbjct: 403 PRLSPSSPYSPTSPNYSPTSPSYSPTSPSYSPSSPTYSPSSPYNSGVSPDYSPSSPQFS- 461
Query: 335 RGGPAAGYASPQSPGYVPTSPAYARPGT 418
P+ GY SP PGY P+S + P T
Sbjct: 462 ---PSTGY-SPSQPGYSPSSTSQYTPQT 485
Score = 72.0 bits (175), Expect = 2e-11
Identities = 57/160 (35%), Positives = 75/160 (46%), Gaps = 7/160 (4%)
Frame = +2
Query: 17 SFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGA 196
S+SP S A +PG SP +P SP SP Y+ SP + +
Sbjct: 342 SYSPTSPSYSPTSPAY-SPTSPGYSPT---SPSYSPTSPSYSPTSPSYNPQ--SAKYSPS 395
Query: 197 GAYAPASPAYMATSP----GMGYSPSTPALAVSSPGYSPG---YSPTSPSVGARGGPAAG 355
AY+P+SP +SP YSP++P+ + +SP YSP YSP+SP
Sbjct: 396 LAYSPSSPRLSPSSPYSPTSPNYSPTSPSYSPTSPSYSPSSPTYSPSSP----------- 444
Query: 356 YASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFS 475
Y S SP Y P+SP ++ P T YSPS P YSP S
Sbjct: 445 YNSGVSPDYSPSSPQFS-PST------GYSPSQPGYSPSS 477
[139][TOP]
>UniRef100_B6H9U6 DNA-directed RNA polymerase n=1 Tax=Penicillium chrysogenum Wisconsin
54-1255 RepID=B6H9U6_PENCW
Length = 1733
Score = 101 bits (251), Expect = 4e-20
Identities = 64/173 (36%), Positives = 91/173 (52%), Gaps = 11/173 (6%)
Frame = +2
Query: 11 TASFSPIMSSADAAGRATPG---RMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGG 181
T+ SP S + + +PG +PG SPA +P P SP Y+ SP +G
Sbjct: 1568 TSPTSPGYSPSSSYSPTSPGIGMMTSPGFSPA---SPTFQPTSPAYSPTSPAYGQASPTS 1624
Query: 182 PAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARG---- 340
P+ Y+P SP + TSP YSP++P+ + +SP +SP YSPTSP++G
Sbjct: 1625 PS-----YSPTSPGFSPTSPN--YSPTSPSFSPASPAFSPTSPSYSPTSPAIGGARHLSP 1677
Query: 341 -GPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAAS 496
P + +P SPG+ PTSP P + + + SP+SPAYSP SP Y+ S
Sbjct: 1678 TSPTSPKYTPTSPGWSPTSPQSYSPTSPNFSGSPTSPTSPAYSPTSPAYSPTS 1730
Score = 94.7 bits (234), Expect = 3e-18
Identities = 66/181 (36%), Positives = 88/181 (48%), Gaps = 11/181 (6%)
Frame = +2
Query: 11 TASFSPIMSSADAAGRATPGRMTPGR-SPAGRFTPRMSPASPGYAAMS------PRFGGG 169
T + ++ G +P +PG SP F SP SPGY+ S P G
Sbjct: 1534 TGGLTEYQATTSTFGGFSPAARSPGGYSPTSPFNT--SPTSPGYSPSSSYSPTSPGIGMM 1591
Query: 170 LGGGPAGGAGAYAPASPAYMATSPGMGY-SPSTPALAVSSPGYSP---GYSPTSPSVGAR 337
G + + + P SPAY TSP G SP++P+ + +SPG+SP YSPTSPS
Sbjct: 1592 TSPGFSPASPTFQPTSPAYSPTSPAYGQASPTSPSYSPTSPGFSPTSPNYSPTSPSFS-- 1649
Query: 338 GGPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPP 517
PA+ SP SP Y PTSPA + SP+SP Y+P SP ++ S +Y P
Sbjct: 1650 --PASPAFSPTSPSYSPTSPAIGGARHLSPT----SPTSPKYTPTSPGWSPTSPQSYSPT 1703
Query: 518 S 520
S
Sbjct: 1704 S 1704
Score = 88.6 bits (218), Expect = 2e-16
Identities = 71/183 (38%), Positives = 87/183 (47%), Gaps = 17/183 (9%)
Frame = +2
Query: 23 SPIMSSADAAGRATPGRMTP----GRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAG 190
SP+ SS AG +P G+ P G T Y A + FGG
Sbjct: 1506 SPMASSPYMAGGDPNSTFSPMHQIGQEPTGGLTE--------YQATTSTFGG-------- 1549
Query: 191 GAGAYAPASPAYMATSPGMGYSPSTPA-LAVSSPGYSPG--YSPTSPSVGARGGPAAGYA 361
++PA A SPG GYSP++P + +SPGYSP YSPTSP +G P A
Sbjct: 1550 ----FSPA-----ARSPG-GYSPTSPFNTSPTSPGYSPSSSYSPTSPGIGMMTSPGFSPA 1599
Query: 362 SPQ----SPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAAS------SPAYQ 511
SP SP Y PTSPAY G + YSP+SP +SP SPNY+ S SPA+
Sbjct: 1600 SPTFQPTSPAYSPTSPAY---GQASPTSPSYSPTSPGFSPTSPNYSPTSPSFSPASPAFS 1656
Query: 512 PPS 520
P S
Sbjct: 1657 PTS 1659
Score = 75.9 bits (185), Expect = 2e-12
Identities = 55/138 (39%), Positives = 74/138 (53%), Gaps = 13/138 (9%)
Frame = +2
Query: 23 SPIMS-SADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAG 199
SP S ++ A G+A+P +P SP +P SP SP Y+ SP F PA +
Sbjct: 1607 SPAYSPTSPAYGQASP--TSPSYSPT---SPGFSPTSPNYSPTSPSFS------PA--SP 1653
Query: 200 AYAPASPAYMATSPGMG-------YSPSTPALAVSSPGYSP----GYSPTSPSV-GARGG 343
A++P SP+Y TSP +G SP++P +SPG+SP YSPTSP+ G+
Sbjct: 1654 AFSPTSPSYSPTSPAIGGARHLSPTSPTSPKYTPTSPGWSPTSPQSYSPTSPNFSGSPTS 1713
Query: 344 PAAGYASPQSPGYVPTSP 397
P + SP SP Y PTSP
Sbjct: 1714 PTSPAYSPTSPAYSPTSP 1731
[140][TOP]
>UniRef100_Q6CL79 DNA-directed RNA polymerase n=1 Tax=Kluyveromyces lactis
RepID=Q6CL79_KLULA
Length = 1720
Score = 100 bits (250), Expect = 5e-20
Identities = 62/151 (41%), Positives = 86/151 (56%), Gaps = 3/151 (1%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP +P SP SP Y+ SP + + + +Y+P SP+Y TSP YS
Sbjct: 1568 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 1614
Query: 257 PSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVA 427
P++P+ + +SP YSP YSPTSPS P + SP SP Y PTSP+Y+
Sbjct: 1615 PTSPSYSPTSPSYSPTSPSYSPTSPSY----SPTSPSYSPTSPSYSPTSPSYS------P 1664
Query: 428 AANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
+ YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1665 TSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 1694
Score = 100 bits (249), Expect = 6e-20
Identities = 60/142 (42%), Positives = 81/142 (57%), Gaps = 4/142 (2%)
Frame = +2
Query: 107 TPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSS 286
+P SP SPGY+ SP +Y+P SP+Y TSP YSP++P+ + +S
Sbjct: 1540 SPGFSPTSPGYSPTSP---------------SYSPTSPSYSPTSP--SYSPTSPSYSPTS 1582
Query: 287 PGY---SPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVAAAN-VYSPSS 454
P Y SP YSPTSPS P + SP SP Y PTSP+Y+ + + YSP+S
Sbjct: 1583 PSYSPTSPSYSPTSPSY----SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1638
Query: 455 PAYSPFSPNYAAASSPAYQPPS 520
P+YSP SP+Y + +SP+Y P S
Sbjct: 1639 PSYSPTSPSY-SPTSPSYSPTS 1659
Score = 97.8 bits (242), Expect = 4e-19
Identities = 68/171 (39%), Positives = 91/171 (53%), Gaps = 4/171 (2%)
Frame = +2
Query: 20 FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAG 199
FSP++ S A A G G + G T S G SP FG G + +
Sbjct: 1492 FSPLVESGGADALAG-GFTAYGGADYGSATSPFS--GYGNGPTSPGFGEVSSPGFSPTSP 1548
Query: 200 AYAPASPAYMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYASPQ 370
Y+P SP+Y TSP YSP++P+ + +SP Y SP YSPTSPS P + SP
Sbjct: 1549 GYSPTSPSYSPTSP--SYSPTSPSYSPTSPSYSPTSPSYSPTSPSY----SPTSPSYSPT 1602
Query: 371 SPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
SP Y PTSP+Y+ + + YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1603 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 1652
Score = 96.7 bits (239), Expect = 9e-19
Identities = 61/148 (41%), Positives = 83/148 (56%), Gaps = 5/148 (3%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP +P SP SP Y+ SP + + + +Y+P SP+Y TSP YS
Sbjct: 1575 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 1621
Query: 257 PSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVA 427
P++P+ + +SP YSP YSPTSPS P + SP SP Y PTSP+Y+ +
Sbjct: 1622 PTSPSYSPTSPSYSPTSPSYSPTSPSYS----PTSPSYSPTSPSYSPTSPSYSPTSPSYS 1677
Query: 428 AANV-YSPSSPAYSPFSPNYAAAS-SPA 505
+ YSP+SP+YSP SP Y+ S SPA
Sbjct: 1678 PTSPSYSPTSPSYSPTSPQYSPGSYSPA 1705
Score = 69.3 bits (168), Expect = 2e-10
Identities = 45/115 (39%), Positives = 61/115 (53%), Gaps = 3/115 (2%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP +P SP SP Y+ SP + + + +Y+P SP+Y TSP YS
Sbjct: 1610 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 1656
Query: 257 PSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARP 412
P++P+ + +SP YSP YSPTSPS P + SP SP Y P S + A P
Sbjct: 1657 PTSPSYSPTSPSYSPTSPSYSPTSPSYS----PTSPSYSPTSPQYSPGSYSPAEP 1707
[141][TOP]
>UniRef100_O94231 RNA polymerase II largest subunit (Fragment) n=1 Tax=Kluyveromyces
lactis RepID=O94231_KLULA
Length = 414
Score = 100 bits (250), Expect = 5e-20
Identities = 62/151 (41%), Positives = 86/151 (56%), Gaps = 3/151 (1%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP +P SP SP Y+ SP + + + +Y+P SP+Y TSP YS
Sbjct: 262 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 308
Query: 257 PSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVA 427
P++P+ + +SP YSP YSPTSPS P + SP SP Y PTSP+Y+
Sbjct: 309 PTSPSYSPTSPSYSPTSPSYSPTSPSY----SPTSPSYSPTSPSYSPTSPSYS------P 358
Query: 428 AANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
+ YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 359 TSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 388
Score = 100 bits (249), Expect = 6e-20
Identities = 60/142 (42%), Positives = 81/142 (57%), Gaps = 4/142 (2%)
Frame = +2
Query: 107 TPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSS 286
+P SP SPGY+ SP +Y+P SP+Y TSP YSP++P+ + +S
Sbjct: 234 SPGFSPTSPGYSPTSP---------------SYSPTSPSYSPTSP--SYSPTSPSYSPTS 276
Query: 287 PGY---SPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVAAAN-VYSPSS 454
P Y SP YSPTSPS P + SP SP Y PTSP+Y+ + + YSP+S
Sbjct: 277 PSYSPTSPSYSPTSPSY----SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 332
Query: 455 PAYSPFSPNYAAASSPAYQPPS 520
P+YSP SP+Y + +SP+Y P S
Sbjct: 333 PSYSPTSPSY-SPTSPSYSPTS 353
Score = 97.8 bits (242), Expect = 4e-19
Identities = 68/171 (39%), Positives = 91/171 (53%), Gaps = 4/171 (2%)
Frame = +2
Query: 20 FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAG 199
FSP++ S A A G G + G T S G SP FG G + +
Sbjct: 186 FSPLVESGGADALAG-GFTAYGGADYGSATSPFS--GYGNGPTSPGFGEVSSPGFSPTSP 242
Query: 200 AYAPASPAYMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYASPQ 370
Y+P SP+Y TSP YSP++P+ + +SP Y SP YSPTSPS P + SP
Sbjct: 243 GYSPTSPSYSPTSP--SYSPTSPSYSPTSPSYSPTSPSYSPTSPSY----SPTSPSYSPT 296
Query: 371 SPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
SP Y PTSP+Y+ + + YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 297 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 346
Score = 96.7 bits (239), Expect = 9e-19
Identities = 61/148 (41%), Positives = 83/148 (56%), Gaps = 5/148 (3%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP +P SP SP Y+ SP + + + +Y+P SP+Y TSP YS
Sbjct: 269 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 315
Query: 257 PSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVA 427
P++P+ + +SP YSP YSPTSPS P + SP SP Y PTSP+Y+ +
Sbjct: 316 PTSPSYSPTSPSYSPTSPSYSPTSPSYS----PTSPSYSPTSPSYSPTSPSYSPTSPSYS 371
Query: 428 AANV-YSPSSPAYSPFSPNYAAAS-SPA 505
+ YSP+SP+YSP SP Y+ S SPA
Sbjct: 372 PTSPSYSPTSPSYSPTSPQYSPGSYSPA 399
Score = 69.3 bits (168), Expect = 2e-10
Identities = 45/115 (39%), Positives = 61/115 (53%), Gaps = 3/115 (2%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP +P SP SP Y+ SP + + + +Y+P SP+Y TSP YS
Sbjct: 304 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 350
Query: 257 PSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARP 412
P++P+ + +SP YSP YSPTSPS P + SP SP Y P S + A P
Sbjct: 351 PTSPSYSPTSPSYSPTSPSYSPTSPSYS----PTSPSYSPTSPQYSPGSYSPAEP 401
[142][TOP]
>UniRef100_B4PY98 DNA-directed RNA polymerase n=1 Tax=Drosophila yakuba
RepID=B4PY98_DROYA
Length = 1889
Score = 100 bits (249), Expect = 6e-20
Identities = 69/201 (34%), Positives = 96/201 (47%), Gaps = 29/201 (14%)
Frame = +2
Query: 5 NATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGG-- 178
+ + S+SP + A+ +PG +P SP+ +P SP SP YA+ SPR+
Sbjct: 1574 SVSPSYSPTSPNYTAS---SPGGASPNYSPS---SPNYSPTSPLYASASPRYASTTPNFN 1627
Query: 179 ----GPAGGAGAYAPASPAYMAT-----------------SPGMGYSPSTPALAVSSPGY 295
G + + Y+P SP Y T SPG YSPS+ + +SP Y
Sbjct: 1628 PQSTGYSPSSSGYSPTSPVYSPTPNFQSSPSFAGSGSNIYSPGNAYSPSSSNYSPNSPSY 1687
Query: 296 SP---GYSPTSPSVGARG---GPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSP 457
SP YSP+SPS P + SP SP Y P +P+Y+ +A+ YSP+SP
Sbjct: 1688 SPTSPSYSPSSPSYSPTSPCYSPTSPSYSPTSPNYTPVTPSYSPTSPNYSASPHYSPASP 1747
Query: 458 AYSPFSPNYAAASSPAYQPPS 520
AYS Y + +SP Y PPS
Sbjct: 1748 AYSQTGVKY-SPTSPTYSPPS 1767
Score = 95.9 bits (237), Expect = 2e-18
Identities = 66/175 (37%), Positives = 87/175 (49%), Gaps = 5/175 (2%)
Frame = +2
Query: 11 TASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAG 190
T S+SP + A+ +P +P S G + SP SP Y+ SP + G +
Sbjct: 1726 TPSYSPTSPNYSASPHYSPA--SPAYSQTG---VKYSPTSPTYSPPSPSYDG------SP 1774
Query: 191 GAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSPG--YSPTSPSVGA---RGGPAAG 355
G+ Y P SP Y SP YSP++P + SSP +SP YSPT + A R P
Sbjct: 1775 GSPQYTPGSPQYSPASPK--YSPTSPLYSPSSPQHSPSNQYSPTGSTYSATSPRYSPNMS 1832
Query: 356 YASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
SP S Y PTSP Y A YSP+SP YSP +P++ + +SPAY P S
Sbjct: 1833 IYSPSSTKYSPTSPTYT------PTARNYSPTSPMYSPTAPSHYSPTSPAYSPSS 1881
Score = 83.2 bits (204), Expect = 1e-14
Identities = 62/161 (38%), Positives = 79/161 (49%), Gaps = 7/161 (4%)
Frame = +2
Query: 53 GRATPGRMTPGRSP-AGRFTPRMSPASPGYAAMSP---RFGGGLGGGPAGGAGAYAPASP 220
G +TP MTP +P TPR +AM+P F +G + +++PA P
Sbjct: 1496 GGSTPS-MTPPMTPWVNCNTPRYFSPPGHVSAMTPGGPSFSPSAASDASGMSPSWSPAHP 1554
Query: 221 AYMATSPGMGYSPSTPALAVSSPGYSPGYSPTSPSVGAR--GGPAAGYASPQSPGYVPTS 394
+SPG SP PA SP SP YSPTSP+ A GG + Y SP SP Y PTS
Sbjct: 1555 GSSPSSPGPSMSPYFPA----SPSVSPSYSPTSPNYTASSPGGASPNY-SPSSPNYSPTS 1609
Query: 395 PAYARPGTVVAAANV-YSPSSPAYSPFSPNYAAASSPAYQP 514
P YA A+ ++P S YSP S Y + +SP Y P
Sbjct: 1610 PLYASASPRYASTTPNFNPQSTGYSPSSSGY-SPTSPVYSP 1649
Score = 82.4 bits (202), Expect = 2e-14
Identities = 61/185 (32%), Positives = 87/185 (47%), Gaps = 18/185 (9%)
Frame = +2
Query: 20 FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAG 199
+SP + + ++ +P +P SP +P SP+SP Y+ SP + + +
Sbjct: 1667 YSPGNAYSPSSSNYSPN--SPSYSPT---SPSYSPSSPSYSPTSPCYSP-TSPSYSPTSP 1720
Query: 200 AYAPASPAYMATSPGMG----YSPSTPALAVSSPGYSPG---YSPTSPSVGARGG----- 343
Y P +P+Y TSP YSP++PA + + YSP YSP SPS G
Sbjct: 1721 NYTPVTPSYSPTSPNYSASPHYSPASPAYSQTGVKYSPTSPTYSPPSPSYDGSPGSPQYT 1780
Query: 344 PAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYA------AASSPA 505
P + SP SP Y PTSP Y+ + +N YSP+ YS SP Y+ + SS
Sbjct: 1781 PGSPQYSPASPKYSPTSPLYSPSSPQHSPSNQYSPTGSTYSATSPRYSPNMSIYSPSSTK 1840
Query: 506 YQPPS 520
Y P S
Sbjct: 1841 YSPTS 1845
Score = 66.6 bits (161), Expect = 1e-09
Identities = 49/131 (37%), Positives = 65/131 (49%), Gaps = 4/131 (3%)
Frame = +2
Query: 23 SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
SP + + + TPG +P SPA +P+ SP SP Y+ SP+ P G
Sbjct: 1767 SPSYDGSPGSPQYTPG--SPQYSPA---SPKYSPTSPLYSPSSPQHSPSNQYSPTGST-- 1819
Query: 203 YAPASPAYMATSPGMG-YSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQ 370
Y+ SP Y SP M YSPS+ + +SP Y+P YSPTSP A + SP
Sbjct: 1820 YSATSPRY---SPNMSIYSPSSTKYSPTSPTYTPTARNYSPTSPMYSPT---APSHYSPT 1873
Query: 371 SPGYVPTSPAY 403
SP Y P+SP +
Sbjct: 1874 SPAYSPSSPTF 1884
[143][TOP]
>UniRef100_B4L732 DNA-directed RNA polymerase n=1 Tax=Drosophila mojavensis
RepID=B4L732_DROMO
Length = 1889
Score = 100 bits (249), Expect = 6e-20
Identities = 69/201 (34%), Positives = 96/201 (47%), Gaps = 29/201 (14%)
Frame = +2
Query: 5 NATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGG-- 178
+ + S+SP + A+ +PG +P SP+ +P SP SP YA+ SPR+
Sbjct: 1574 SVSPSYSPTSPNYTAS---SPGGASPNYSPS---SPNYSPTSPLYASTSPRYASTTPNFN 1627
Query: 179 ----GPAGGAGAYAPASPAYMATS-----------------PGMGYSPSTPALAVSSPGY 295
G + + Y+P SP Y TS PG YSPS+ + +SP Y
Sbjct: 1628 PQSTGYSPSSSGYSPTSPVYSPTSNFQSSPSFAGSGSNMYSPGNAYSPSSSNYSPNSPSY 1687
Query: 296 SP---GYSPTSPSVGARG---GPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSP 457
SP YSP+SPS P + SP SP Y P +P+Y+ +A+ YSP+SP
Sbjct: 1688 SPMSPSYSPSSPSYSPTSPCYSPTSPSYSPTSPNYTPVTPSYSPTSPNYSASPHYSPASP 1747
Query: 458 AYSPFSPNYAAASSPAYQPPS 520
AYS Y + +SP Y PPS
Sbjct: 1748 AYSQTGVKY-SPTSPTYSPPS 1767
Score = 95.9 bits (237), Expect = 2e-18
Identities = 66/175 (37%), Positives = 87/175 (49%), Gaps = 5/175 (2%)
Frame = +2
Query: 11 TASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAG 190
T S+SP + A+ +P +P S G + SP SP Y+ SP + G +
Sbjct: 1726 TPSYSPTSPNYSASPHYSPA--SPAYSQTG---VKYSPTSPTYSPPSPSYDG------SP 1774
Query: 191 GAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSPG--YSPTSPSVGA---RGGPAAG 355
G+ Y P SP Y SP YSP++P + SSP +SP YSPT + A R P
Sbjct: 1775 GSPQYTPGSPQYSPASPK--YSPTSPLYSPSSPQHSPSNQYSPTGSTYSATSPRYSPNMS 1832
Query: 356 YASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
SP S Y PTSP Y A YSP+SP YSP +P++ + +SPAY P S
Sbjct: 1833 IYSPSSTKYSPTSPTYT------PTARNYSPTSPMYSPTAPSHYSPTSPAYSPSS 1881
Score = 87.0 bits (214), Expect = 7e-16
Identities = 64/163 (39%), Positives = 81/163 (49%), Gaps = 7/163 (4%)
Frame = +2
Query: 53 GRATPGRMTPGRSP-AGRFTPRMSPASPGYAAMSP---RFGGGLGGGPAGGAGAYAPASP 220
G +TP MTP +P TPR S +AM+P F +G + +++PA P
Sbjct: 1496 GGSTPS-MTPPMTPWVNCHTPRYFSPSGHVSAMTPGGPSFSPSAASDASGMSPSWSPAHP 1554
Query: 221 AYMATSPGMGYSPSTPALAVSSPGYSPGYSPTSPSVGAR--GGPAAGYASPQSPGYVPTS 394
+SPG SP PA SP SP YSPTSP+ A GG + Y SP SP Y PTS
Sbjct: 1555 GSSPSSPGPSMSPYFPA----SPSVSPSYSPTSPNYTASSPGGASPNY-SPSSPNYSPTS 1609
Query: 395 PAYARPGTVVAAANV-YSPSSPAYSPFSPNYAAASSPAYQPPS 520
P YA A+ ++P S YSP S Y + +SP Y P S
Sbjct: 1610 PLYASTSPRYASTTPNFNPQSTGYSPSSSGY-SPTSPVYSPTS 1651
Score = 83.6 bits (205), Expect = 8e-15
Identities = 59/167 (35%), Positives = 79/167 (47%), Gaps = 18/167 (10%)
Frame = +2
Query: 74 MTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMG- 250
M+P SP+ +P SP SP Y+ SP + + + Y P +P+Y TSP
Sbjct: 1690 MSPSYSPS---SPSYSPTSPCYSPTSPSY--------SPTSPNYTPVTPSYSPTSPNYSA 1738
Query: 251 ---YSPSTPALAVSSPGYSPG---YSPTSPSVGARGG-----PAAGYASPQSPGYVPTSP 397
YSP++PA + + YSP YSP SPS G P + SP SP Y PTSP
Sbjct: 1739 SPHYSPASPAYSQTGVKYSPTSPTYSPPSPSYDGSPGSPQYTPGSPQYSPASPKYSPTSP 1798
Query: 398 AYARPGTVVAAANVYSPSSPAYSPFSPNYA------AASSPAYQPPS 520
Y+ + +N YSP+ YS SP Y+ + SS Y P S
Sbjct: 1799 LYSPSSPQHSPSNQYSPTGSTYSATSPRYSPNMSIYSPSSTKYSPTS 1845
Score = 66.6 bits (161), Expect = 1e-09
Identities = 49/131 (37%), Positives = 65/131 (49%), Gaps = 4/131 (3%)
Frame = +2
Query: 23 SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
SP + + + TPG +P SPA +P+ SP SP Y+ SP+ P G
Sbjct: 1767 SPSYDGSPGSPQYTPG--SPQYSPA---SPKYSPTSPLYSPSSPQHSPSNQYSPTGST-- 1819
Query: 203 YAPASPAYMATSPGMG-YSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQ 370
Y+ SP Y SP M YSPS+ + +SP Y+P YSPTSP A + SP
Sbjct: 1820 YSATSPRY---SPNMSIYSPSSTKYSPTSPTYTPTARNYSPTSPMYSPT---APSHYSPT 1873
Query: 371 SPGYVPTSPAY 403
SP Y P+SP +
Sbjct: 1874 SPAYSPSSPTF 1884
[144][TOP]
>UniRef100_Q5WMZ9 DNA-directed RNA polymerase n=1 Tax=Oryza sativa Japonica Group
RepID=Q5WMZ9_ORYSJ
Length = 1741
Score = 100 bits (248), Expect = 8e-20
Identities = 65/172 (37%), Positives = 84/172 (48%), Gaps = 6/172 (3%)
Frame = +2
Query: 23 SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGG---GPAGG 193
SPI S + T +P + SP SP Y SP + P
Sbjct: 1569 SPIYSPTSLSYSPTSPVYSPTSPVYNPTSSAYSPTSPSYNPTSPSYSYSPTSPSYSPTSP 1628
Query: 194 AGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYAS 364
+ +Y+P SP+Y TSP YSP++P+ + +SP Y SP YSPTSPS S
Sbjct: 1629 SYSYSPTSPSYSPTSPSYNYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-----------S 1677
Query: 365 PQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
P SP Y PTS AY+ + YSP+SP YSP SP+Y + SSP+Y P S
Sbjct: 1678 PTSPSYSPTSSAYS------PTSPAYSPTSPGYSPTSPSY-SPSSPSYNPSS 1722
Score = 94.7 bits (234), Expect = 3e-18
Identities = 78/245 (31%), Positives = 103/245 (42%), Gaps = 74/245 (30%)
Frame = +2
Query: 8 ATASFSPIMSSADAAGRATPGRMTP----GRSPA--------GRFTPRM----------- 118
A A FSP + + ++PG TP G SP+ G FT
Sbjct: 1472 ADAQFSPYVGGMAFSPVSSPGNYTPSSGGGYSPSPPVCTPGPGSFTSSSPYNPVSPFYSP 1531
Query: 119 --------------------SPASPGYAAMSPRFG--------GGLGGGPAG-------- 190
SP SP Y+A SP + L P
Sbjct: 1532 ASPLSCPLTSPSYVPTSLPHSPTSPIYSATSPIYSPSSPIYSPTSLSYSPTSPVYSPTSP 1591
Query: 191 ----GAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY-----SPGYSPTSPS-----V 328
+ AY+P SP+Y TSP YSP++P+ + +SP Y SP YSPTSPS
Sbjct: 1592 VYNPTSSAYSPTSPSYNPTSPSYSYSPTSPSYSPTSPSYSYSPTSPSYSPTSPSYNYSPT 1651
Query: 329 GARGGPAAGYASPQSPGYVPTSPAYARPG-TVVAAANVYSPSSPAYSPFSPNYAAASSPA 505
P + SP SP Y PTSP+Y+ + ++ YSP+SPAYSP SP Y + +SP+
Sbjct: 1652 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSSAYSPTSPAYSPTSPGY-SPTSPS 1710
Query: 506 YQPPS 520
Y P S
Sbjct: 1711 YSPSS 1715
Score = 77.0 bits (188), Expect = 7e-13
Identities = 62/176 (35%), Positives = 84/176 (47%), Gaps = 22/176 (12%)
Frame = +2
Query: 23 SPIMSSADAAGRATPGRMTPGRSPAGRFTPRM------------SPASPGYAAMSPRFGG 166
SP+ + +A T P SP+ ++P SP SP Y+ SP +
Sbjct: 1590 SPVYNPTSSAYSPTSPSYNP-TSPSYSYSPTSPSYSPTSPSYSYSPTSPSYSPTSPSYNY 1648
Query: 167 GLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP----------GYSPT 316
+ + +Y+P SP+Y TSP YSP++P+ + +SP YSP YSPT
Sbjct: 1649 ------SPTSPSYSPTSPSYSPTSPS--YSPTSPSYSPTSPSYSPTSSAYSPTSPAYSPT 1700
Query: 317 SPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNY 484
SP GY SP SP Y P+SP+Y P +V Y+PS AYSP SPNY
Sbjct: 1701 SP----------GY-SPTSPSYSPSSPSY-NPSSV-----KYTPSH-AYSPSSPNY 1738
Score = 69.7 bits (169), Expect = 1e-10
Identities = 58/176 (32%), Positives = 79/176 (44%), Gaps = 6/176 (3%)
Frame = +2
Query: 11 TASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAG 190
T++ SPI + G +P + SP R +P + A SP + GG+ P
Sbjct: 1439 TSACSPISGTPYHQGMMSPSYLL---SPDIRASPTAADAQ-----FSP-YVGGMAFSPVS 1489
Query: 191 GAGAYAPAS-----PAYMATSPGMGYSPSTPALAVSSPGYSPGYSPTSPSVGARGGPAAG 355
G Y P+S P+ +PG G S+ SP YSP + P P +
Sbjct: 1490 SPGNYTPSSGGGYSPSPPVCTPGPGSFTSSSPYNPVSPFYSPASPLSCPLTSPSYVPTSL 1549
Query: 356 YASPQSPGYVPTSPAYARPGTVVAAANV-YSPSSPAYSPFSPNYAAASSPAYQPPS 520
SP SP Y TSP Y+ + + ++ YSP+SP YSP SP Y SS AY P S
Sbjct: 1550 PHSPTSPIYSATSPIYSPSSPIYSPTSLSYSPTSPVYSPTSPVYNPTSS-AYSPTS 1604
[145][TOP]
>UniRef100_B3MQ29 DNA-directed RNA polymerase n=1 Tax=Drosophila ananassae
RepID=B3MQ29_DROAN
Length = 1889
Score = 100 bits (248), Expect = 8e-20
Identities = 69/201 (34%), Positives = 95/201 (47%), Gaps = 29/201 (14%)
Frame = +2
Query: 5 NATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGG-- 178
+ + S+SP + A+ +PG +P SP+ +P SP SP YA SPR+
Sbjct: 1574 SVSPSYSPTSPNYTAS---SPGGASPNYSPS---SPNYSPTSPLYATTSPRYASTTPNFN 1627
Query: 179 ----GPAGGAGAYAPASPAYMATS-----------------PGMGYSPSTPALAVSSPGY 295
G + + Y+P SP Y TS PG YSPS+ + +SP Y
Sbjct: 1628 PQSTGYSPSSSGYSPTSPVYSPTSNYQSSPSFAGSGSNMYSPGNAYSPSSSNYSPNSPSY 1687
Query: 296 SP---GYSPTSPSVGARG---GPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSP 457
SP YSP+SPS P + SP SP Y P +P+Y+ +A+ YSP+SP
Sbjct: 1688 SPTSPSYSPSSPSYSPTSPCYSPTSPSYSPTSPNYTPVTPSYSPTSPNYSASPHYSPASP 1747
Query: 458 AYSPFSPNYAAASSPAYQPPS 520
AYS Y + +SP Y PPS
Sbjct: 1748 AYSQTGVKY-SPTSPTYSPPS 1767
Score = 95.9 bits (237), Expect = 2e-18
Identities = 66/175 (37%), Positives = 87/175 (49%), Gaps = 5/175 (2%)
Frame = +2
Query: 11 TASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAG 190
T S+SP + A+ +P +P S G + SP SP Y+ SP + G +
Sbjct: 1726 TPSYSPTSPNYSASPHYSPA--SPAYSQTG---VKYSPTSPTYSPPSPSYDG------SP 1774
Query: 191 GAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSPG--YSPTSPSVGA---RGGPAAG 355
G+ Y P SP Y SP YSP++P + SSP +SP YSPT + A R P
Sbjct: 1775 GSPQYTPGSPQYSPASPK--YSPTSPLYSPSSPQHSPSNQYSPTGSTYSATSPRYSPNMS 1832
Query: 356 YASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
SP S Y PTSP Y A YSP+SP YSP +P++ + +SPAY P S
Sbjct: 1833 IYSPSSTKYSPTSPTYT------PTARNYSPTSPMYSPTAPSHYSPTSPAYSPSS 1881
Score = 84.3 bits (207), Expect = 5e-15
Identities = 63/163 (38%), Positives = 80/163 (49%), Gaps = 7/163 (4%)
Frame = +2
Query: 53 GRATPGRMTPGRSP-AGRFTPRMSPASPGYAAMSP---RFGGGLGGGPAGGAGAYAPASP 220
G +TP MTP +P TPR +AM+P F +G + +++PA P
Sbjct: 1496 GGSTPS-MTPPMTPWVNCNTPRYFSPPGHVSAMTPGGPSFSPSAASDASGMSPSWSPAHP 1554
Query: 221 AYMATSPGMGYSPSTPALAVSSPGYSPGYSPTSPSVGAR--GGPAAGYASPQSPGYVPTS 394
+SPG SP PA SP SP YSPTSP+ A GG + Y SP SP Y PTS
Sbjct: 1555 GSSPSSPGPSMSPYFPA----SPSVSPSYSPTSPNYTASSPGGASPNY-SPSSPNYSPTS 1609
Query: 395 PAYARPGTVVAAANV-YSPSSPAYSPFSPNYAAASSPAYQPPS 520
P YA A+ ++P S YSP S Y + +SP Y P S
Sbjct: 1610 PLYATTSPRYASTTPNFNPQSTGYSPSSSGY-SPTSPVYSPTS 1651
Score = 82.4 bits (202), Expect = 2e-14
Identities = 61/185 (32%), Positives = 87/185 (47%), Gaps = 18/185 (9%)
Frame = +2
Query: 20 FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAG 199
+SP + + ++ +P +P SP +P SP+SP Y+ SP + + +
Sbjct: 1667 YSPGNAYSPSSSNYSPN--SPSYSPT---SPSYSPSSPSYSPTSPCYSP-TSPSYSPTSP 1720
Query: 200 AYAPASPAYMATSPGMG----YSPSTPALAVSSPGYSPG---YSPTSPSVGARGG----- 343
Y P +P+Y TSP YSP++PA + + YSP YSP SPS G
Sbjct: 1721 NYTPVTPSYSPTSPNYSASPHYSPASPAYSQTGVKYSPTSPTYSPPSPSYDGSPGSPQYT 1780
Query: 344 PAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYA------AASSPA 505
P + SP SP Y PTSP Y+ + +N YSP+ YS SP Y+ + SS
Sbjct: 1781 PGSPQYSPASPKYSPTSPLYSPSSPQHSPSNQYSPTGSTYSATSPRYSPNMSIYSPSSTK 1840
Query: 506 YQPPS 520
Y P S
Sbjct: 1841 YSPTS 1845
Score = 66.6 bits (161), Expect = 1e-09
Identities = 49/131 (37%), Positives = 65/131 (49%), Gaps = 4/131 (3%)
Frame = +2
Query: 23 SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
SP + + + TPG +P SPA +P+ SP SP Y+ SP+ P G
Sbjct: 1767 SPSYDGSPGSPQYTPG--SPQYSPA---SPKYSPTSPLYSPSSPQHSPSNQYSPTGST-- 1819
Query: 203 YAPASPAYMATSPGMG-YSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQ 370
Y+ SP Y SP M YSPS+ + +SP Y+P YSPTSP A + SP
Sbjct: 1820 YSATSPRY---SPNMSIYSPSSTKYSPTSPTYTPTARNYSPTSPMYSPT---APSHYSPT 1873
Query: 371 SPGYVPTSPAY 403
SP Y P+SP +
Sbjct: 1874 SPAYSPSSPTF 1884
[146][TOP]
>UniRef100_Q9AXN0 DNA-directed RNA polymerase n=1 Tax=Glaucosphaera vacuolata
RepID=Q9AXN0_9RHOD
Length = 1746
Score = 99.8 bits (247), Expect = 1e-19
Identities = 74/190 (38%), Positives = 92/190 (48%), Gaps = 23/190 (12%)
Frame = +2
Query: 20 FSPIMSS--ADAAGRATP---GRMTPGRSPAGRFTPRMSPASPG----YAAMSPRFGGGL 172
FSP +S DAA TP +P + A F SP S Y+ SP GG+
Sbjct: 1534 FSPFAASPYGDAAFSPTPTSPAYASPYGTAASPFNAMASPYSRAGNAFYSPRSPSSPGGV 1593
Query: 173 GGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARGG 343
P Y+P SP Y TSP YSP++P+ + +SP YSP YSPTSP+
Sbjct: 1594 AASPG-----YSPTSPTYSPTSPS--YSPTSPSYSPTSPAYSPTSPAYSPTSPTYS---- 1642
Query: 344 PAAGYASPQSPGYVPTSPAYARPGTVVAAANV-----------YSPSSPAYSPFSPNYAA 490
P + SP SP Y PTSP Y+ ++ A YSPSSP YSP SP+Y +
Sbjct: 1643 PTSPTYSPTSPTYSPTSPMYSPSSPAMSPARAGGVSYSPSSPHYSPSSPQYSPSSPHY-S 1701
Query: 491 ASSPAYQPPS 520
SSP Y P S
Sbjct: 1702 PSSPHYSPSS 1711
Score = 98.6 bits (244), Expect = 2e-19
Identities = 77/200 (38%), Positives = 106/200 (53%), Gaps = 27/200 (13%)
Frame = +2
Query: 8 ATASFSPIMSSADAAGRA--------TPGRM--TPGRSPAGRFTPRMSPASPGYAAMSPR 157
A + F+ + S AG A +PG + +PG SP +P SP SP Y+ SP
Sbjct: 1563 AASPFNAMASPYSRAGNAFYSPRSPSSPGGVAASPGYSPT---SPTYSPTSPSYSPTSPS 1619
Query: 158 FGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSPG---YSPTSPSV 328
+ + + AY+P SPAY TSP YSP++P + +SP YSP YSP+SP++
Sbjct: 1620 Y--------SPTSPAYSPTSPAYSPTSPT--YSPTSPTYSPTSPTYSPTSPMYSPSSPAM 1669
Query: 329 G-ARGG-----PAAGYASPQSPGYVPTSPAYARPGTVVAAANV--------YSPSSPAYS 466
AR G P++ + SP SP Y P+SP Y+ + ++ YSPSSPAYS
Sbjct: 1670 SPARAGGVSYSPSSPHYSPSSPQYSPSSPHYSPSSPHYSPSSPQYSPSSPQYSPSSPAYS 1729
Query: 467 PFSPNYAAASSPAYQPPSRR 526
P SP Y + SSPA+ PS R
Sbjct: 1730 PSSPAY-SPSSPAH--PSTR 1746
Score = 53.9 bits (128), Expect = 7e-06
Identities = 53/167 (31%), Positives = 65/167 (38%), Gaps = 29/167 (17%)
Frame = +2
Query: 107 TPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSS 286
TPR SP + +PR A AG+ P P+TP A S
Sbjct: 1488 TPRAGLMSPAHGFDTPR---------AFDAGSMTPY--------------PATPGQATPS 1524
Query: 287 PGYSPGYSPTSPSVGARGGPAAGYASPQSPGY-----VPTSP------AYARPGTV---- 421
Y+P SP + G AA +P SP Y SP Y+R G
Sbjct: 1525 YPYTPIGGQFSPFAASPYGDAAFSPTPTSPAYASPYGTAASPFNAMASPYSRAGNAFYSP 1584
Query: 422 --------VAAANVYSPSSPAYSPFSPNYAAAS------SPAYQPPS 520
VAA+ YSP+SP YSP SP+Y+ S SPAY P S
Sbjct: 1585 RSPSSPGGVAASPGYSPTSPTYSPTSPSYSPTSPSYSPTSPAYSPTS 1631
[147][TOP]
>UniRef100_Q0D054 DNA-directed RNA polymerase n=1 Tax=Aspergillus terreus NIH2624
RepID=Q0D054_ASPTN
Length = 1742
Score = 99.8 bits (247), Expect = 1e-19
Identities = 64/170 (37%), Positives = 90/170 (52%), Gaps = 14/170 (8%)
Frame = +2
Query: 11 TASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAG 190
++S+SP ++ G +P +PG SPA +P P SP Y+ SP +G P+
Sbjct: 1584 SSSYSP---TSPGMGITSPRMTSPGFSPA---SPAFGPTSPAYSPTSPAYGQASPTSPS- 1636
Query: 191 GAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARGG-----P 346
Y+P SP + TSP YSP++P L+ +SP +SP YSPTSP++GA P
Sbjct: 1637 ----YSPTSPGFSPTSPN--YSPTSPNLSPASPVFSPTSPSYSPTSPALGAGRNMSPTSP 1690
Query: 347 AAGYASPQSPGYVPTSPAYARP------GTVVAAANVYSPSSPAYSPFSP 478
+ +P SPG+ PTSP P G+ + YSP+SP YSP SP
Sbjct: 1691 TSPKYTPTSPGWSPTSPQSYSPTSPNIGGSPTSPGGAYSPTSPTYSPTSP 1740
Score = 95.1 bits (235), Expect = 3e-18
Identities = 70/195 (35%), Positives = 94/195 (48%), Gaps = 26/195 (13%)
Frame = +2
Query: 14 ASFSPIMSSADAAGRATPGRMT---PGRSPAGRFTPRMSPASP-GYAAMSPRFGGGLGGG 181
++FSPI AG +PG T P G F+P +P SP GY+ SP F GG
Sbjct: 1527 SNFSPIRQ----AGAESPGGFTEYQPTAGFGGGFSP--APTSPLGYSPGSP-FSGGATSP 1579
Query: 182 PAGGAGAYAPASPAYMATSPGM---GYSPSTPALAVSSPGYSP-------------GYSP 313
+ +Y+P SP TSP M G+SP++PA +SP YSP YSP
Sbjct: 1580 SYSPSSSYSPTSPGMGITSPRMTSPGFSPASPAFGPTSPAYSPTSPAYGQASPTSPSYSP 1639
Query: 314 TSPSVGARG---GPAAGYASPQSPGYVPTSPAYARPGTVVAAA---NVYSPSSPAYSPFS 475
TSP P + SP SP + PTSP+Y+ + A + SP+SP Y+P S
Sbjct: 1640 TSPGFSPTSPNYSPTSPNLSPASPVFSPTSPSYSPTSPALGAGRNMSPTSPTSPKYTPTS 1699
Query: 476 PNYAAASSPAYQPPS 520
P ++ S +Y P S
Sbjct: 1700 PGWSPTSPQSYSPTS 1714
Score = 94.0 bits (232), Expect = 6e-18
Identities = 66/171 (38%), Positives = 89/171 (52%), Gaps = 10/171 (5%)
Frame = +2
Query: 20 FSPIMSSADAAGRATP---GRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAG 190
FSP +S +P G +P SP+ + SP SPG SPR G PA
Sbjct: 1556 FSPAPTSPLGYSPGSPFSGGATSPSYSPSSSY----SPTSPGMGITSPRMTSP-GFSPA- 1609
Query: 191 GAGAYAPASPAYMATSPGMGY-SPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGY 358
+ A+ P SPAY TSP G SP++P+ + +SPG+SP YSPTSP++ PA+
Sbjct: 1610 -SPAFGPTSPAYSPTSPAYGQASPTSPSYSPTSPGFSPTSPNYSPTSPNLS----PASPV 1664
Query: 359 ASPQSPGYVPTSPAYARPGTVVAAANV---YSPSSPAYSPFSPNYAAASSP 502
SP SP Y PTSPA + + Y+P+SP +SP SP + +SP
Sbjct: 1665 FSPTSPSYSPTSPALGAGRNMSPTSPTSPKYTPTSPGWSPTSPQSYSPTSP 1715
[148][TOP]
>UniRef100_B4MAN9 DNA-directed RNA polymerase n=1 Tax=Drosophila virilis
RepID=B4MAN9_DROVI
Length = 1889
Score = 99.4 bits (246), Expect = 1e-19
Identities = 68/176 (38%), Positives = 89/176 (50%), Gaps = 5/176 (2%)
Frame = +2
Query: 8 ATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPA 187
AT S+SP + A+ +P +P S G + SP SP Y+ SP + G +
Sbjct: 1725 ATPSYSPTSPNYSASPHYSPA--SPAYSQTG---VKYSPTSPTYSPPSPSYDG------S 1773
Query: 188 GGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSPG--YSPTSPSVGA---RGGPAA 352
G+ Y P SP Y TSP YSP++P + SSP +SP YSPT + A R P
Sbjct: 1774 PGSPQYTPGSPQYSPTSPK--YSPTSPLYSPSSPQHSPSNQYSPTGSTYSATSPRYSPNM 1831
Query: 353 GYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
SP S Y PTSP Y A YSP+SP YSP +P++ + +SPAY P S
Sbjct: 1832 SIYSPSSTKYSPTSPTYT------PTARNYSPTSPMYSPTAPSHYSPTSPAYSPSS 1881
Score = 97.1 bits (240), Expect = 7e-19
Identities = 68/201 (33%), Positives = 94/201 (46%), Gaps = 29/201 (14%)
Frame = +2
Query: 5 NATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGG-- 178
+ + S+SP + A+ +PG +P SP+ +P SP SP Y A S R+
Sbjct: 1574 SVSPSYSPTSPNYTAS---SPGGASPNYSPS---SPNYSPTSPLYTATSLRYASATPNFN 1627
Query: 179 ----GPAGGAGAYAPASPAYMATS-----------------PGMGYSPSTPALAVSSPGY 295
G + + Y+P SP Y TS PG YSPS+ + +SP Y
Sbjct: 1628 PQSTGYSPSSSGYSPTSPVYSPTSNFQSSPSFAGSGSNMYSPGNAYSPSSSNYSSNSPSY 1687
Query: 296 SP---GYSPTSPSVGARG---GPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSP 457
SP YSP+SPS P + SP SP Y P +P+Y+ +A+ YSP+SP
Sbjct: 1688 SPMSPSYSPSSPSYSPTSPCYSPTSPSYSPTSPNYTPATPSYSPTSPNYSASPHYSPASP 1747
Query: 458 AYSPFSPNYAAASSPAYQPPS 520
AYS Y + +SP Y PPS
Sbjct: 1748 AYSQTGVKY-SPTSPTYSPPS 1767
Score = 85.5 bits (210), Expect = 2e-15
Identities = 64/186 (34%), Positives = 89/186 (47%), Gaps = 18/186 (9%)
Frame = +2
Query: 17 SFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGA 196
++SP SS ++ + M+P SP+ +P SP SP Y+ SP + + +
Sbjct: 1672 AYSP-SSSNYSSNSPSYSPMSPSYSPS---SPSYSPTSPCYSPTSPSY--------SPTS 1719
Query: 197 GAYAPASPAYMATSPGMG----YSPSTPALAVSSPGYSPG---YSPTSPSVGARGG---- 343
Y PA+P+Y TSP YSP++PA + + YSP YSP SPS G
Sbjct: 1720 PNYTPATPSYSPTSPNYSASPHYSPASPAYSQTGVKYSPTSPTYSPPSPSYDGSPGSPQY 1779
Query: 344 -PAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYA------AASSP 502
P + SP SP Y PTSP Y+ + +N YSP+ YS SP Y+ + SS
Sbjct: 1780 TPGSPQYSPTSPKYSPTSPLYSPSSPQHSPSNQYSPTGSTYSATSPRYSPNMSIYSPSST 1839
Query: 503 AYQPPS 520
Y P S
Sbjct: 1840 KYSPTS 1845
Score = 82.0 bits (201), Expect = 2e-14
Identities = 60/164 (36%), Positives = 79/164 (48%), Gaps = 13/164 (7%)
Frame = +2
Query: 68 GRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPA----------GGAGAYAPAS 217
G TP +P TP ++ +P Y + S G GGP+ G + +++PA
Sbjct: 1496 GGSTPSMTPP--MTPWVNCHTPRYFSPSGHVSGMTPGGPSFSPSAASDASGMSPSWSPAH 1553
Query: 218 PAYMATSPGMGYSPSTPALAVSSPGYSPGYSPTSPSVGAR--GGPAAGYASPQSPGYVPT 391
P +SPG SP +SP SP YSPTSP+ A GG + Y SP SP Y PT
Sbjct: 1554 PGSSPSSPGPSMSPHFS----TSPSVSPSYSPTSPNYTASSPGGASPNY-SPSSPNYSPT 1608
Query: 392 SPAYARPGTVVAAANV-YSPSSPAYSPFSPNYAAASSPAYQPPS 520
SP Y A+A ++P S YSP S Y + +SP Y P S
Sbjct: 1609 SPLYTATSLRYASATPNFNPQSTGYSPSSSGY-SPTSPVYSPTS 1651
Score = 66.6 bits (161), Expect = 1e-09
Identities = 48/133 (36%), Positives = 63/133 (47%), Gaps = 6/133 (4%)
Frame = +2
Query: 23 SPIMSSADAAGRATPG--RMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGA 196
SP S + +PG + TPG +P+ SP SP Y+ SP+ P G
Sbjct: 1760 SPTYSPPSPSYDGSPGSPQYTPGSPQYSPTSPKYSPTSPLYSPSSPQHSPSNQYSPTGST 1819
Query: 197 GAYAPASPAYMATSPGMG-YSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYAS 364
Y+ SP Y SP M YSPS+ + +SP Y+P YSPTSP A + S
Sbjct: 1820 --YSATSPRY---SPNMSIYSPSSTKYSPTSPTYTPTARNYSPTSPMYSPT---APSHYS 1871
Query: 365 PQSPGYVPTSPAY 403
P SP Y P+SP +
Sbjct: 1872 PTSPAYSPSSPTF 1884
[149][TOP]
>UniRef100_B4NDK9 DNA-directed RNA polymerase n=1 Tax=Drosophila willistoni
RepID=B4NDK9_DROWI
Length = 1890
Score = 99.0 bits (245), Expect = 2e-19
Identities = 69/201 (34%), Positives = 94/201 (46%), Gaps = 29/201 (14%)
Frame = +2
Query: 5 NATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGG-- 178
+ + S+SP +S + + G +P SP+ +P SP SP YAA SPR+
Sbjct: 1574 SVSPSYSP--TSPNYTASSPSGGASPNYSPS---SPNYSPTSPLYAATSPRYASTTPNFN 1628
Query: 179 ----GPAGGAGAYAPASPAYMATS-----------------PGMGYSPSTPALAVSSPGY 295
G + + Y+P SP Y TS PG YSPS+ +SP Y
Sbjct: 1629 LQSTGYSPSSSGYSPTSPVYSPTSNFQSSPSFAGSGSNMYSPGNAYSPSSSNYTPNSPSY 1688
Query: 296 SP---GYSPTSPSVGARG---GPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSP 457
SP YSP+SPS P + SP SP Y P +P+Y+ +A+ YSP+SP
Sbjct: 1689 SPTSPSYSPSSPSYSPTSPCYSPTSPSYSPTSPNYTPVTPSYSPTSPNYSASPHYSPASP 1748
Query: 458 AYSPFSPNYAAASSPAYQPPS 520
AYS Y + +SP Y PPS
Sbjct: 1749 AYSQTGVKY-SPTSPTYSPPS 1768
Score = 95.9 bits (237), Expect = 2e-18
Identities = 66/175 (37%), Positives = 87/175 (49%), Gaps = 5/175 (2%)
Frame = +2
Query: 11 TASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAG 190
T S+SP + A+ +P +P S G + SP SP Y+ SP + G +
Sbjct: 1727 TPSYSPTSPNYSASPHYSPA--SPAYSQTG---VKYSPTSPTYSPPSPSYDG------SP 1775
Query: 191 GAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSPG--YSPTSPSVGA---RGGPAAG 355
G+ Y P SP Y SP YSP++P + SSP +SP YSPT + A R P
Sbjct: 1776 GSPQYTPGSPQYSPASPK--YSPTSPLYSPSSPQHSPSNQYSPTGSTYSATSPRYSPNMS 1833
Query: 356 YASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
SP S Y PTSP Y A YSP+SP YSP +P++ + +SPAY P S
Sbjct: 1834 IYSPSSTKYSPTSPTYT------PTARNYSPTSPMYSPTAPSHYSPTSPAYSPSS 1882
Score = 84.0 bits (206), Expect = 6e-15
Identities = 62/185 (33%), Positives = 87/185 (47%), Gaps = 18/185 (9%)
Frame = +2
Query: 20 FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAG 199
+SP + + ++ TP +P SP +P SP+SP Y+ SP + + +
Sbjct: 1668 YSPGNAYSPSSSNYTPN--SPSYSPT---SPSYSPSSPSYSPTSPCYSP-TSPSYSPTSP 1721
Query: 200 AYAPASPAYMATSPGMG----YSPSTPALAVSSPGYSPG---YSPTSPSVGARGG----- 343
Y P +P+Y TSP YSP++PA + + YSP YSP SPS G
Sbjct: 1722 NYTPVTPSYSPTSPNYSASPHYSPASPAYSQTGVKYSPTSPTYSPPSPSYDGSPGSPQYT 1781
Query: 344 PAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYA------AASSPA 505
P + SP SP Y PTSP Y+ + +N YSP+ YS SP Y+ + SS
Sbjct: 1782 PGSPQYSPASPKYSPTSPLYSPSSPQHSPSNQYSPTGSTYSATSPRYSPNMSIYSPSSTK 1841
Query: 506 YQPPS 520
Y P S
Sbjct: 1842 YSPTS 1846
Score = 75.9 bits (185), Expect = 2e-12
Identities = 66/172 (38%), Positives = 85/172 (49%), Gaps = 6/172 (3%)
Frame = +2
Query: 17 SFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGA 196
SFSP +S DA+G M+P SPA P SP+SPG +MSP F P+
Sbjct: 1533 SFSPAAAS-DASG------MSPSWSPAH---PGSSPSSPG-PSMSPYFPTSPSVSPS--- 1578
Query: 197 GAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSPGYSPTSPSVGARGGPAAGYASPQSP 376
Y+P SP Y A+SP G SP+ SP SP YSPTSP A SP
Sbjct: 1579 --YSPTSPNYTASSPSGGASPNY------SPS-SPNYSPTSPLYAAT-----------SP 1618
Query: 377 GYVPTSPAYARPGTVVA-AANVYSPSSPAYSP-----FSPNYAAASSPAYQP 514
Y T+P + T + +++ YSP+SP YSP SP++A + S Y P
Sbjct: 1619 RYASTTPNFNLQSTGYSPSSSGYSPTSPVYSPTSNFQSSPSFAGSGSNMYSP 1670
Score = 72.0 bits (175), Expect = 2e-11
Identities = 60/146 (41%), Positives = 70/146 (47%), Gaps = 9/146 (6%)
Frame = +2
Query: 98 GRFTPRMSPA-SPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYM--ATSPGMGYSPS-T 265
G TP M+P +P +PR+ P G A + P P++ A S G SPS +
Sbjct: 1496 GGSTPSMTPPMTPWVNCNTPRYFS-----PQGHASSMTPGGPSFSPAAASDASGMSPSWS 1550
Query: 266 PALAVSSPGYSPG-----YSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVAA 430
PA SSP SPG Y PTSPSV SP Y PTSP Y A
Sbjct: 1551 PAHPGSSPS-SPGPSMSPYFPTSPSV--------------SPSYSPTSPNYTASSPSGGA 1595
Query: 431 ANVYSPSSPAYSPFSPNYAAASSPAY 508
+ YSPSSP YSP SP Y AA+SP Y
Sbjct: 1596 SPNYSPSSPNYSPTSPLY-AATSPRY 1620
Score = 66.6 bits (161), Expect = 1e-09
Identities = 49/131 (37%), Positives = 65/131 (49%), Gaps = 4/131 (3%)
Frame = +2
Query: 23 SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
SP + + + TPG +P SPA +P+ SP SP Y+ SP+ P G
Sbjct: 1768 SPSYDGSPGSPQYTPG--SPQYSPA---SPKYSPTSPLYSPSSPQHSPSNQYSPTGST-- 1820
Query: 203 YAPASPAYMATSPGMG-YSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQ 370
Y+ SP Y SP M YSPS+ + +SP Y+P YSPTSP A + SP
Sbjct: 1821 YSATSPRY---SPNMSIYSPSSTKYSPTSPTYTPTARNYSPTSPMYSPT---APSHYSPT 1874
Query: 371 SPGYVPTSPAY 403
SP Y P+SP +
Sbjct: 1875 SPAYSPSSPTF 1885
[150][TOP]
>UniRef100_B2W4S0 DNA-directed RNA polymerase n=1 Tax=Pyrenophora tritici-repentis
Pt-1C-BFP RepID=B2W4S0_PYRTR
Length = 1742
Score = 99.0 bits (245), Expect = 2e-19
Identities = 77/196 (39%), Positives = 94/196 (47%), Gaps = 26/196 (13%)
Frame = +2
Query: 17 SFSPIMSSADAAGRATPGRMTP--GRSPAGRFTPR---MSPASPGYAAMSPRFGGGLGGG 181
SFSP+ A A G G T G +G F+P SP G+ MSP F + G
Sbjct: 1520 SFSPM---AAAGGGDDQGGFTAYGGSYGSGGFSPYDGGRSPGGSGFTGMSPGFTSPVSPG 1576
Query: 182 PAGGAGAYAP-----ASPAYMATSPGMGYSPSTPALAVSSPGY----SPGYSPTSPSVGA 334
+ + Y+P ASP + ATSPG SP++P + +SP Y SP YSPTSP A
Sbjct: 1577 FSPTSPGYSPTSPGTASPRFAATSPGYMASPTSPHYSPTSPRYGSPTSPSYSPTSP---A 1633
Query: 335 RGGPAAGYASPQSPGYVPTSPAYARPGTVVAAANV---YSPSSPAYSPFSPNYAAAS--- 496
P + SP SP Y PTSP + T A + YSP+SP YSP SP Y A S
Sbjct: 1634 GYSPTSPQYSPTSPNYSPTSPTFMGGATSPAYSPTSPQYSPTSPQYSPTSPQYQATSDRR 1693
Query: 497 ------SPAYQPPSRR 526
SP Y P S R
Sbjct: 1694 SPTSPTSPQYSPTSPR 1709
Score = 90.5 bits (223), Expect = 6e-17
Identities = 74/193 (38%), Positives = 90/193 (46%), Gaps = 23/193 (11%)
Frame = +2
Query: 11 TASFSPIMSSADAAGRATPGRMTPG-RSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPA 187
+ FSP G G M+PG SP +P SP SPGY+ SP +
Sbjct: 1545 SGGFSPYDGGRSPGGSGFTG-MSPGFTSPV---SPGFSPTSPGYSPTSPGTASPRFAATS 1600
Query: 188 GGAGAYAPASPAYMATSPGMG------YSPSTPA-LAVSSPGYSP---GYSPTSPSVGAR 337
G A +P SP Y TSP G YSP++PA + +SP YSP YSPTSP+
Sbjct: 1601 PGYMA-SPTSPHYSPTSPRYGSPTSPSYSPTSPAGYSPTSPQYSPTSPNYSPTSPTF--M 1657
Query: 338 GGPAAGYASPQSPGYVPTSPAYARPGTVVAAAN----VYSPSSPAYSPFSPNYAAAS--- 496
GG + SP SP Y PTSP Y+ A + SP+SP YSP SP Y+ S
Sbjct: 1658 GGATSPAYSPTSPQYSPTSPQYSPTSPQYQATSDRRSPTSPTSPQYSPTSPRYSPTSPAG 1717
Query: 497 -----SPAYQPPS 520
SP Y P S
Sbjct: 1718 SFSPTSPRYSPTS 1730
Score = 87.4 bits (215), Expect = 5e-16
Identities = 68/173 (39%), Positives = 81/173 (46%), Gaps = 25/173 (14%)
Frame = +2
Query: 77 TPGRSPA--GRFTPRMSPASPGYAAM---------SPRFGGGLGGG--PAGGAGAYAPAS 217
+PG SP G +PR + SPGY A SPR+G P AG Y+P S
Sbjct: 1581 SPGYSPTSPGTASPRFAATSPGYMASPTSPHYSPTSPRYGSPTSPSYSPTSPAG-YSPTS 1639
Query: 218 PAYMATSPGMGYSPSTPAL--AVSSPGYSPG----------YSPTSPSVGARGGPAAGYA 361
P Y TSP YSP++P +SP YSP YSPTSP A +
Sbjct: 1640 PQYSPTSPN--YSPTSPTFMGGATSPAYSPTSPQYSPTSPQYSPTSPQYQATSDRRSP-T 1696
Query: 362 SPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
SP SP Y PTSP Y+ + A +SP+SP YSP SP PAY P S
Sbjct: 1697 SPTSPQYSPTSPRYSP----TSPAGSFSPTSPRYSPTSP------GPAYSPTS 1739
Score = 67.0 bits (162), Expect = 8e-10
Identities = 53/155 (34%), Positives = 66/155 (42%), Gaps = 31/155 (20%)
Frame = +2
Query: 149 SPRFGGGLGGG---PAGGAGAYAPASPAYMATSPGMG-------YSPSTPA--------- 271
S GG G G G A Y SP Y GMG +SP A
Sbjct: 1478 SKMMGGAAGAGTYLSDGAATPYDLGSPTYEG-GMGMGGGYDQVSFSPMAAAGGGDDQGGF 1536
Query: 272 ----LAVSSPGYSPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYA--RPGT----- 418
+ S G+SP SP G + G+ SP SPG+ PTSP Y+ PGT
Sbjct: 1537 TAYGGSYGSGGFSPYDGGRSPGGSGFTGMSPGFTSPVSPGFSPTSPGYSPTSPGTASPRF 1596
Query: 419 -VVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
+ + SP+SP YSP SP Y + +SP+Y P S
Sbjct: 1597 AATSPGYMASPTSPHYSPTSPRYGSPTSPSYSPTS 1631
Score = 57.8 bits (138), Expect = 5e-07
Identities = 38/102 (37%), Positives = 50/102 (49%)
Frame = +2
Query: 17 SFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGA 196
++SP +S G AT +P +P+ SP SP Y A S R P
Sbjct: 1648 NYSP--TSPTFMGGATSPAYSPTSPQYSPTSPQYSPTSPQYQATSDRRSPTSPTSPQ--- 1702
Query: 197 GAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSPGYSPTSP 322
Y+P SP Y TSP +SP++P + +SPG P YSPTSP
Sbjct: 1703 --YSPTSPRYSPTSPAGSFSPTSPRYSPTSPG--PAYSPTSP 1740
[151][TOP]
>UniRef100_B3NUC1 DNA-directed RNA polymerase n=1 Tax=Drosophila erecta
RepID=B3NUC1_DROER
Length = 1889
Score = 98.2 bits (243), Expect = 3e-19
Identities = 68/201 (33%), Positives = 95/201 (47%), Gaps = 29/201 (14%)
Frame = +2
Query: 5 NATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGG-- 178
+ + S+SP + A+ +PG +P SP+ +P SP SP YA+ SPR+
Sbjct: 1574 SVSPSYSPTSPNYTAS---SPGGASPNYSPS---SPNYSPTSPLYASASPRYASTTPNFN 1627
Query: 179 ----GPAGGAGAYAPASPAYMAT-----------------SPGMGYSPSTPALAVSSPGY 295
G + + Y+P SP Y T SP YSPS+ + +SP Y
Sbjct: 1628 PQSTGYSPSSSGYSPTSPVYSPTPHFQSSPSFAGSGSNIYSPANAYSPSSANYSPNSPSY 1687
Query: 296 SP---GYSPTSPSVGARG---GPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSP 457
SP YSP+SPS P + SP SP Y P +P+Y+ +A+ YSP+SP
Sbjct: 1688 SPTSPSYSPSSPSYSPTSPCYSPTSPSYSPTSPNYTPVTPSYSPTSPNYSASPHYSPASP 1747
Query: 458 AYSPFSPNYAAASSPAYQPPS 520
AYS Y + +SP Y PPS
Sbjct: 1748 AYSQTGVKY-SPTSPTYSPPS 1767
Score = 95.9 bits (237), Expect = 2e-18
Identities = 66/175 (37%), Positives = 87/175 (49%), Gaps = 5/175 (2%)
Frame = +2
Query: 11 TASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAG 190
T S+SP + A+ +P +P S G + SP SP Y+ SP + G +
Sbjct: 1726 TPSYSPTSPNYSASPHYSPA--SPAYSQTG---VKYSPTSPTYSPPSPSYDG------SP 1774
Query: 191 GAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSPG--YSPTSPSVGA---RGGPAAG 355
G+ Y P SP Y SP YSP++P + SSP +SP YSPT + A R P
Sbjct: 1775 GSPQYTPGSPQYSPASPK--YSPTSPLYSPSSPQHSPSNQYSPTGSTYSATSPRYSPNMS 1832
Query: 356 YASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
SP S Y PTSP Y A YSP+SP YSP +P++ + +SPAY P S
Sbjct: 1833 IYSPSSTKYSPTSPTYT------PTARNYSPTSPMYSPTAPSHYSPTSPAYSPSS 1881
Score = 84.7 bits (208), Expect = 4e-15
Identities = 63/161 (39%), Positives = 80/161 (49%), Gaps = 7/161 (4%)
Frame = +2
Query: 53 GRATPGRMTPGRSP-AGRFTPRMSPASPGYAAMSP---RFGGGLGGGPAGGAGAYAPASP 220
G +TP MTP +P A TPR +AM+P F +G + +++PA P
Sbjct: 1496 GGSTPS-MTPPMTPWANCNTPRYFSPPGHVSAMTPGGPSFSPSAASDASGMSPSWSPAHP 1554
Query: 221 AYMATSPGMGYSPSTPALAVSSPGYSPGYSPTSPSVGAR--GGPAAGYASPQSPGYVPTS 394
+SPG SP PA SP SP YSPTSP+ A GG + Y SP SP Y PTS
Sbjct: 1555 GSSPSSPGPSMSPYFPA----SPSVSPSYSPTSPNYTASSPGGASPNY-SPSSPNYSPTS 1609
Query: 395 PAYARPGTVVAAANV-YSPSSPAYSPFSPNYAAASSPAYQP 514
P YA A+ ++P S YSP S Y + +SP Y P
Sbjct: 1610 PLYASASPRYASTTPNFNPQSTGYSPSSSGY-SPTSPVYSP 1649
Score = 83.6 bits (205), Expect = 8e-15
Identities = 61/185 (32%), Positives = 87/185 (47%), Gaps = 18/185 (9%)
Frame = +2
Query: 20 FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAG 199
+SP + + ++ +P +P SP +P SP+SP Y+ SP + + +
Sbjct: 1667 YSPANAYSPSSANYSPN--SPSYSPT---SPSYSPSSPSYSPTSPCYSP-TSPSYSPTSP 1720
Query: 200 AYAPASPAYMATSPGMG----YSPSTPALAVSSPGYSPG---YSPTSPSVGARGG----- 343
Y P +P+Y TSP YSP++PA + + YSP YSP SPS G
Sbjct: 1721 NYTPVTPSYSPTSPNYSASPHYSPASPAYSQTGVKYSPTSPTYSPPSPSYDGSPGSPQYT 1780
Query: 344 PAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYA------AASSPA 505
P + SP SP Y PTSP Y+ + +N YSP+ YS SP Y+ + SS
Sbjct: 1781 PGSPQYSPASPKYSPTSPLYSPSSPQHSPSNQYSPTGSTYSATSPRYSPNMSIYSPSSTK 1840
Query: 506 YQPPS 520
Y P S
Sbjct: 1841 YSPTS 1845
Score = 66.6 bits (161), Expect = 1e-09
Identities = 49/131 (37%), Positives = 65/131 (49%), Gaps = 4/131 (3%)
Frame = +2
Query: 23 SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
SP + + + TPG +P SPA +P+ SP SP Y+ SP+ P G
Sbjct: 1767 SPSYDGSPGSPQYTPG--SPQYSPA---SPKYSPTSPLYSPSSPQHSPSNQYSPTGST-- 1819
Query: 203 YAPASPAYMATSPGMG-YSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQ 370
Y+ SP Y SP M YSPS+ + +SP Y+P YSPTSP A + SP
Sbjct: 1820 YSATSPRY---SPNMSIYSPSSTKYSPTSPTYTPTARNYSPTSPMYSPT---APSHYSPT 1873
Query: 371 SPGYVPTSPAY 403
SP Y P+SP +
Sbjct: 1874 SPAYSPSSPTF 1884
[152][TOP]
>UniRef100_UPI000179338A PREDICTED: similar to DNA-directed RNA polymerase II subunit RPB1
(RNA polymerase II subunit B1) (DNA-directed RNA
polymerase III largest subunit) n=1 Tax=Acyrthosiphon
pisum RepID=UPI000179338A
Length = 1862
Score = 97.8 bits (242), Expect = 4e-19
Identities = 66/171 (38%), Positives = 90/171 (52%), Gaps = 5/171 (2%)
Frame = +2
Query: 17 SFSPIMSSADAAGRATP--GRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAG 190
++SP A + TP M+P + SP SP Y+ SP + +
Sbjct: 1603 NYSPTSPQYSATQQNTPKYSSMSPNYN--------YSPTSPSYSPTSPSYSHT---SYSP 1651
Query: 191 GAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYA 361
+ +Y+P SP+Y TSP YSP++P+ + +SP YSP YSPTSPS P +
Sbjct: 1652 TSPSYSPTSPSYSPTSPS--YSPTSPSYSPTSPSYSPTSPSYSPTSPSY----SPTSPSY 1705
Query: 362 SPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQP 514
SP SP Y PTSP+Y+ + YSP+SP+YSP SP Y ASSP+Y P
Sbjct: 1706 SPTSPSYSPTSPSYS------PTSPSYSPTSPSYSPSSPQY-TASSPSYTP 1749
Score = 97.1 bits (240), Expect = 7e-19
Identities = 73/187 (39%), Positives = 98/187 (52%), Gaps = 20/187 (10%)
Frame = +2
Query: 20 FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRM--SPASPGYAAMSPRFG-------GGL 172
FSP SS +A+G +P MT G +P +P M SP P +MSP + G +
Sbjct: 1538 FSPAGSS-EASG-TSPFWMTSGGTPGSPGSPGMATSPYVPSPNSMSPNYNYPSSPQFGSM 1595
Query: 173 GGGPAGGAGAYAPASPAYMAT----------SPGMGYSPSTPALAVSSPGYS-PGYSPTS 319
P+ Y+P SP Y AT SP YSP++P+ + +SP YS YSPTS
Sbjct: 1596 S--PSMTPTNYSPTSPQYSATQQNTPKYSSMSPNYNYSPTSPSYSPTSPSYSHTSYSPTS 1653
Query: 320 PSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASS 499
PS P + SP SP Y PTSP+Y+ + YSP+SP+YSP SP+Y + +S
Sbjct: 1654 PSYS----PTSPSYSPTSPSYSPTSPSYS------PTSPSYSPTSPSYSPTSPSY-SPTS 1702
Query: 500 PAYQPPS 520
P+Y P S
Sbjct: 1703 PSYSPTS 1709
Score = 86.3 bits (212), Expect = 1e-15
Identities = 65/187 (34%), Positives = 87/187 (46%), Gaps = 17/187 (9%)
Frame = +2
Query: 11 TASFSPIMSSADAAG-----RATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRF---GG 166
T S SP M+ D + + G +P G P SPA A+ + F G
Sbjct: 1501 TPSMSPAMTPWDQTSTPVYQNSWSSSLEAGMTPGG---PGFSPAGSSEASGTSPFWMTSG 1557
Query: 167 GLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP-GYSPTSPSVGARGG 343
G G P A +P P+ + SP Y PS+P SP +P YSPTSP A
Sbjct: 1558 GTPGSPGSPGMATSPYVPSPNSMSPNYNY-PSSPQFGSMSPSMTPTNYSPTSPQYSATQQ 1616
Query: 344 PAAGYA--------SPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASS 499
Y+ SP SP Y PTSP+Y+ + + YSP+SP+YSP SP+Y + +S
Sbjct: 1617 NTPKYSSMSPNYNYSPTSPSYSPTSPSYSHTSYSPTSPS-YSPTSPSYSPTSPSY-SPTS 1674
Query: 500 PAYQPPS 520
P+Y P S
Sbjct: 1675 PSYSPTS 1681
Score = 85.9 bits (211), Expect = 2e-15
Identities = 60/162 (37%), Positives = 77/162 (47%), Gaps = 16/162 (9%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP +P SP SP Y+ SP + + + +Y+P SP+Y TSP YS
Sbjct: 1688 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 1734
Query: 257 PSTPALAVSSPGYSPG---------YSPTSPS--VGARGGPAAGYASPQSPGYVPTSPAY 403
PS+P SSP Y+P YSPTSPS V P + SP + Y P+S +
Sbjct: 1735 PSSPQYTASSPSYTPSATSGASNYKYSPTSPSLAVSPTYSPTSPMYSPSNASYSPSSVQH 1794
Query: 404 ARPGTVVAAANVYSPSSPAYSP-----FSPNYAAASSPAYQP 514
V YSPSSP YSP SP Y + +SP Y P
Sbjct: 1795 TPNAGVTQYNQSYSPSSPVYSPTNFSLASPRY-SPTSPTYSP 1835
Score = 80.5 bits (197), Expect = 7e-14
Identities = 66/171 (38%), Positives = 87/171 (50%), Gaps = 34/171 (19%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMG-- 250
+P SP +P SP SP Y+ SP + + + +Y+P+SP Y A+SP
Sbjct: 1702 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPSSPQYTASSPSYTPS 1750
Query: 251 ---------YSPSTPALAVS------SPGYSPG---YSPTS----PSVGARG-----GPA 349
YSP++P+LAVS SP YSP YSP+S P+ G P+
Sbjct: 1751 ATSGASNYKYSPTSPSLAVSPTYSPTSPMYSPSNASYSPSSVQHTPNAGVTQYNQSYSPS 1810
Query: 350 AGYASPQ-----SPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYA 487
+ SP SP Y PTSP Y+ PG V + N YSPSSP+YSP SPNY+
Sbjct: 1811 SPVYSPTNFSLASPRYSPTSPTYS-PG--VGSPN-YSPSSPSYSPTSPNYS 1857
Score = 58.2 bits (139), Expect = 4e-07
Identities = 54/148 (36%), Positives = 65/148 (43%), Gaps = 36/148 (24%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA----YAPASPA------Y 226
+P SP +P SP+SP Y A SP + P+ +GA Y+P SP+ Y
Sbjct: 1723 SPSYSPT---SPSYSPSSPQYTASSPSYT------PSATSGASNYKYSPTSPSLAVSPTY 1773
Query: 227 MATSP-----GMGYSPS----TPALAV---------SSPGYSPG--------YSPTSPSV 328
TSP YSPS TP V SSP YSP YSPTSP+
Sbjct: 1774 SPTSPMYSPSNASYSPSSVQHTPNAGVTQYNQSYSPSSPVYSPTNFSLASPRYSPTSPTY 1833
Query: 329 GARGGPAAGYASPQSPGYVPTSPAYARP 412
G + SP SP Y PTSP Y+ P
Sbjct: 1834 SP--GVGSPNYSPSSPSYSPTSPNYSGP 1859
[153][TOP]
>UniRef100_C5Y387 DNA-directed RNA polymerase n=1 Tax=Sorghum bicolor
RepID=C5Y387_SORBI
Length = 1874
Score = 97.8 bits (242), Expect = 4e-19
Identities = 71/184 (38%), Positives = 96/184 (52%), Gaps = 13/184 (7%)
Frame = +2
Query: 8 ATASFSPIMSSAD-AAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGP 184
++ SFSP +S + A+ +P SP +P SPAS Y+ SP F
Sbjct: 1646 SSPSFSPTSTSPSYSPASASYSPTSPFYSPT---SPSYSPASLSYSPTSP-FYSPTSPSY 1701
Query: 185 AGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAG 355
+ + +Y+P SP Y TSP YSPS+P+ + +SP YSP GYSPTSP P +
Sbjct: 1702 SPASLSYSPTSPFYSPTSPS--YSPSSPSYSPTSPTYSPTSLGYSPTSPGYS----PTSP 1755
Query: 356 YASPQSPGYVPTSPAYARPGTVVAAANVYSPS---------SPAYSPFSPNYAAASSPAY 508
SP SP Y PTSP+Y T ++N YSP+ +P YSP SP Y + +SP+Y
Sbjct: 1756 TYSPTSPNYSPTSPSYNLSYTEYNSSNTYSPTRPRITLDSQAPDYSPTSPTY-SPTSPSY 1814
Query: 509 QPPS 520
PS
Sbjct: 1815 SLPS 1818
Score = 84.0 bits (206), Expect = 6e-15
Identities = 63/198 (31%), Positives = 91/198 (45%), Gaps = 32/198 (16%)
Frame = +2
Query: 23 SPIMSSADAAG---RATPGRMTPGRSPAGRFTPRMSPASPGYAAMSP---RFGGGLGGGP 184
SPI + +AA +T TP TP +P SP Y+ +P + P
Sbjct: 1572 SPIYTPYNAASPVNASTSTSYTPVSPVYSPTTPVYTPMSPVYSPTTPVSSQIQSYSSASP 1631
Query: 185 -----AGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSPG--------------- 304
+ + Y P+SP++ TS YSP++ + + +SP YSP
Sbjct: 1632 IYNPISPNSSRYNPSSPSFSPTSTSPSYSPASASYSPTSPFYSPTSPSYSPASLSYSPTS 1691
Query: 305 --YSPTSPSVGARG---GPAAGYASPQSPGYVPTSPAYARPGTVVAAANV-YSPSSPAYS 466
YSPTSPS P + + SP SP Y P+SP+Y+ + ++ YSP+SP YS
Sbjct: 1692 PFYSPTSPSYSPASLSYSPTSPFYSPTSPSYSPSSPSYSPTSPTYSPTSLGYSPTSPGYS 1751
Query: 467 PFSPNYAAASSPAYQPPS 520
P SP Y + +SP Y P S
Sbjct: 1752 PTSPTY-SPTSPNYSPTS 1768
Score = 61.2 bits (147), Expect = 4e-08
Identities = 50/146 (34%), Positives = 65/146 (44%), Gaps = 30/146 (20%)
Frame = +2
Query: 107 TPRMSPASPGYAAMSPRFGG-GLGGGPAGG-----AGAYAPASPAYMATSPGMG------ 250
+P SP+SP Y+ SP + LG P + Y+P SP Y TSP
Sbjct: 1719 SPSYSPSSPSYSPTSPTYSPTSLGYSPTSPGYSPTSPTYSPTSPNYSPTSPSYNLSYTEY 1778
Query: 251 -----YSPSTPALAVSS--PGYSPG---YSPTSPSVGARGGPAAGYASPQ--------SP 376
YSP+ P + + S P YSP YSPTSPS P+ Y+ + SP
Sbjct: 1779 NSSNTYSPTRPRITLDSQAPDYSPTSPTYSPTSPSYSL---PSLSYSPNRPTDDSGRPSP 1835
Query: 377 GYVPTSPAYARPGTVVAAANVYSPSS 454
Y PTSP ++ + A YSPSS
Sbjct: 1836 DYSPTSPNFSPNRSDSPTAADYSPSS 1861
Score = 59.3 bits (142), Expect = 2e-07
Identities = 42/132 (31%), Positives = 59/132 (44%), Gaps = 4/132 (3%)
Frame = +2
Query: 137 YAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP--GYS 310
YA+ SP + + P G Y+P + SP P + SP Y+P S
Sbjct: 1528 YASFSP-YVRDMSLSPVPSQGGYSPIPRSESGYSP----IPRSVRYMAVSPIYTPYNAAS 1582
Query: 311 PTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAA 490
P + S P + SP +P Y P SP Y+ V + YS +SP Y+P SPN +
Sbjct: 1583 PVNASTSTSYTPVSPVYSPTTPVYTPMSPVYSPTTPVSSQIQSYSSASPIYNPISPNSSR 1642
Query: 491 --ASSPAYQPPS 520
SSP++ P S
Sbjct: 1643 YNPSSPSFSPTS 1654
Score = 59.3 bits (142), Expect = 2e-07
Identities = 45/128 (35%), Positives = 66/128 (51%), Gaps = 9/128 (7%)
Frame = +2
Query: 164 GGLGGGPAGGAG-AYAPASPAYMATSP-GMGYSPSTPALAVSSPGY---SPGYSPTSPSV 328
GG P +G + P S YMA SP Y+ ++P A +S Y SP YSPT+P
Sbjct: 1547 GGYSPIPRSESGYSPIPRSVRYMAVSPIYTPYNAASPVNASTSTSYTPVSPVYSPTTPVY 1606
Query: 329 GARGGPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSP---AYSPFSPNYAAAS- 496
+P SP Y PT+P ++ + +A+ +Y+P SP Y+P SP+++ S
Sbjct: 1607 -----------TPMSPVYSPTTPVSSQIQSYSSASPIYNPISPNSSRYNPSSPSFSPTST 1655
Query: 497 SPAYQPPS 520
SP+Y P S
Sbjct: 1656 SPSYSPAS 1663
[154][TOP]
>UniRef100_B4R347 RNA polymerase II 215kD subunit n=1 Tax=Drosophila simulans
RepID=B4R347_DROSI
Length = 552
Score = 97.8 bits (242), Expect = 4e-19
Identities = 70/200 (35%), Positives = 96/200 (48%), Gaps = 28/200 (14%)
Frame = +2
Query: 5 NATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSP-----ASPGYAAMSPRFGGG 169
+ + S+SP + A+ +PG +P SP+ +P SP ASP YA+ +P F
Sbjct: 239 SVSPSYSPTSPNYTAS---SPGGASPNYSPS---SPNYSPTSPLYASPRYASTTPNFNPQ 292
Query: 170 LGGGPAGGAGAYAPASPAYMAT-----------------SPGMGYSPSTPALAVSSPGYS 298
G +G Y+P SP Y T SPG YSPS+ + +SP YS
Sbjct: 293 STGYSPSSSG-YSPTSPGYSPTAQFQSSPSFAGSGSNIYSPGNAYSPSSSNYSPNSPSYS 351
Query: 299 P---GYSPTSPSVGARG---GPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPA 460
P YSP+SPS P + SP SP Y P +P+Y+ +A+ YSP+SPA
Sbjct: 352 PTSPSYSPSSPSYSPTSPCYSPTSPSYSPTSPNYTPVTPSYSPTSPNYSASPQYSPASPA 411
Query: 461 YSPFSPNYAAASSPAYQPPS 520
YS Y + +SP Y PPS
Sbjct: 412 YSQTGVKY-SPTSPTYSPPS 430
Score = 97.1 bits (240), Expect = 7e-19
Identities = 77/192 (40%), Positives = 103/192 (53%), Gaps = 24/192 (12%)
Frame = +2
Query: 17 SFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGA 196
SFSP +S DA+G M+P SPA P SP+SPG +MSP F P+
Sbjct: 198 SFSPSAAS-DASG------MSPSWSPAH---PGSSPSSPG-PSMSPYFPASPSVSPS--- 243
Query: 197 GAYAPASPAYMATSPG---MGYSPSTPALAVSSPGY-SPGYSPTSPSVGARGGPAAGYAS 364
Y+P SP Y A+SPG YSPS+P + +SP Y SP Y+ T+P+ + + GY S
Sbjct: 244 --YSPTSPNYTASSPGGASPNYSPSSPNYSPTSPLYASPRYASTTPNFNPQ---STGY-S 297
Query: 365 PQSPGYVPTSPAYA-------------------RPGTVVA-AANVYSPSSPAYSPFSPNY 484
P S GY PTSP Y+ PG + +++ YSP+SP+YSP SP+Y
Sbjct: 298 PSSSGYSPTSPGYSPTAQFQSSPSFAGSGSNIYSPGNAYSPSSSNYSPNSPSYSPTSPSY 357
Query: 485 AAASSPAYQPPS 520
+ SSP+Y P S
Sbjct: 358 -SPSSPSYSPTS 368
Score = 95.9 bits (237), Expect = 2e-18
Identities = 66/175 (37%), Positives = 87/175 (49%), Gaps = 5/175 (2%)
Frame = +2
Query: 11 TASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAG 190
T S+SP + A+ + +P +P S G + SP SP Y+ SP + G +
Sbjct: 389 TPSYSPTSPNYSASPQYSPA--SPAYSQTG---VKYSPTSPTYSPPSPSYDG------SP 437
Query: 191 GAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSPG--YSPTSPSVGA---RGGPAAG 355
G+ Y P SP Y SP YSP++P + SSP +SP YSPT + A R P
Sbjct: 438 GSPQYTPGSPQYSPASPK--YSPTSPLYSPSSPQHSPSNQYSPTGSTYSATSPRYSPNMS 495
Query: 356 YASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
SP S Y PTSP Y A YSP+SP YSP +P++ + SPAY P S
Sbjct: 496 IYSPSSTKYSPTSPTYT------PTARNYSPTSPMYSPTAPSHYSPKSPAYSPSS 544
Score = 87.8 bits (216), Expect = 4e-16
Identities = 66/168 (39%), Positives = 81/168 (48%), Gaps = 16/168 (9%)
Frame = +2
Query: 53 GRATPGRMTPGRSP-AGRFTPRMSPASPGYAAMSP---RFGGGLGGGPAGGAGAYAPASP 220
G +TP MTP +P TPR +AM+P F +G + +++PA P
Sbjct: 161 GGSTPS-MTPPMTPWVNCNTPRYFSPPGHVSAMTPGGPSFSPSAASDASGMSPSWSPAHP 219
Query: 221 AYMATSPGMGYSPSTPALAVSSPGYSPGYSPTSPSVGAR--GGPAAGYASPQSPGYVPTS 394
+SPG SP PA SP SP YSPTSP+ A GG + Y SP SP Y PTS
Sbjct: 220 GSSPSSPGPSMSPYFPA----SPSVSPSYSPTSPNYTASSPGGASPNY-SPSSPNYSPTS 274
Query: 395 PAYARPGTVVAAANV------YSPSSPAYSPFSPNYAAA----SSPAY 508
P YA P N YSPSS YSP SP Y+ SSP++
Sbjct: 275 PLYASPRYASTTPNFNPQSTGYSPSSSGYSPTSPGYSPTAQFQSSPSF 322
Score = 83.2 bits (204), Expect = 1e-14
Identities = 66/206 (32%), Positives = 87/206 (42%), Gaps = 36/206 (17%)
Frame = +2
Query: 11 TASFSPIMSSADAAGRA-TPGRM-TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGP 184
TA F S A + +PG +P S +P SP SP Y+ SP +
Sbjct: 313 TAQFQSSPSFAGSGSNIYSPGNAYSPSSSNYSPNSPSYSPTSPSYSPSSPSY-------- 364
Query: 185 AGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYS---------------------- 298
+ + Y+P SP+Y TSP Y+P TP+ + +SP YS
Sbjct: 365 SPTSPCYSPTSPSYSPTSPN--YTPVTPSYSPTSPNYSASPQYSPASPAYSQTGVKYSPT 422
Query: 299 -PGYSPTSPSVGARGG-----PAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPA 460
P YSP SPS G P + SP SP Y PTSP Y+ + +N YSP+
Sbjct: 423 SPTYSPPSPSYDGSPGSPQYTPGSPQYSPASPKYSPTSPLYSPSSPQHSPSNQYSPTGST 482
Query: 461 YSPFSPNYA------AASSPAYQPPS 520
YS SP Y+ + SS Y P S
Sbjct: 483 YSATSPRYSPNMSIYSPSSTKYSPTS 508
Score = 67.4 bits (163), Expect = 6e-10
Identities = 49/131 (37%), Positives = 66/131 (50%), Gaps = 4/131 (3%)
Frame = +2
Query: 23 SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
SP + + + TPG +P SPA +P+ SP SP Y+ SP+ P G
Sbjct: 430 SPSYDGSPGSPQYTPG--SPQYSPA---SPKYSPTSPLYSPSSPQHSPSNQYSPTGST-- 482
Query: 203 YAPASPAYMATSPGMG-YSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQ 370
Y+ SP Y SP M YSPS+ + +SP Y+P YSPTSP A + SP+
Sbjct: 483 YSATSPRY---SPNMSIYSPSSTKYSPTSPTYTPTARNYSPTSPMYSPT---APSHYSPK 536
Query: 371 SPGYVPTSPAY 403
SP Y P+SP +
Sbjct: 537 SPAYSPSSPTF 547
[155][TOP]
>UniRef100_B4IK28 DNA-directed RNA polymerase n=1 Tax=Drosophila sechellia
RepID=B4IK28_DROSE
Length = 1887
Score = 97.8 bits (242), Expect = 4e-19
Identities = 70/200 (35%), Positives = 96/200 (48%), Gaps = 28/200 (14%)
Frame = +2
Query: 5 NATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSP-----ASPGYAAMSPRFGGG 169
+ + S+SP + A+ +PG +P SP+ +P SP ASP YA+ +P F
Sbjct: 1574 SVSPSYSPTSPNYTAS---SPGGASPNYSPS---SPNYSPTSPLYASPRYASTTPNFNPQ 1627
Query: 170 LGGGPAGGAGAYAPASPAYMAT-----------------SPGMGYSPSTPALAVSSPGYS 298
G +G Y+P SP Y T SPG YSPS+ + +SP YS
Sbjct: 1628 STGYSPSSSG-YSPTSPGYSPTAQFQSSPSFAGSGSNIYSPGNAYSPSSSNYSPNSPSYS 1686
Query: 299 P---GYSPTSPSVGARG---GPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPA 460
P YSP+SPS P + SP SP Y P +P+Y+ +A+ YSP+SPA
Sbjct: 1687 PTSPSYSPSSPSYSPTSPCYSPTSPSYSPTSPNYTPVTPSYSPTSPNYSASPQYSPASPA 1746
Query: 461 YSPFSPNYAAASSPAYQPPS 520
YS Y + +SP Y PPS
Sbjct: 1747 YSQTGVKY-SPTSPTYSPPS 1765
Score = 97.1 bits (240), Expect = 7e-19
Identities = 77/192 (40%), Positives = 103/192 (53%), Gaps = 24/192 (12%)
Frame = +2
Query: 17 SFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGA 196
SFSP +S DA+G M+P SPA P SP+SPG +MSP F P+
Sbjct: 1533 SFSPSAAS-DASG------MSPSWSPAH---PGSSPSSPG-PSMSPYFPASPSVSPS--- 1578
Query: 197 GAYAPASPAYMATSPG---MGYSPSTPALAVSSPGY-SPGYSPTSPSVGARGGPAAGYAS 364
Y+P SP Y A+SPG YSPS+P + +SP Y SP Y+ T+P+ + + GY S
Sbjct: 1579 --YSPTSPNYTASSPGGASPNYSPSSPNYSPTSPLYASPRYASTTPNFNPQ---STGY-S 1632
Query: 365 PQSPGYVPTSPAYA-------------------RPGTVVA-AANVYSPSSPAYSPFSPNY 484
P S GY PTSP Y+ PG + +++ YSP+SP+YSP SP+Y
Sbjct: 1633 PSSSGYSPTSPGYSPTAQFQSSPSFAGSGSNIYSPGNAYSPSSSNYSPNSPSYSPTSPSY 1692
Query: 485 AAASSPAYQPPS 520
+ SSP+Y P S
Sbjct: 1693 -SPSSPSYSPTS 1703
Score = 96.3 bits (238), Expect = 1e-18
Identities = 66/175 (37%), Positives = 88/175 (50%), Gaps = 5/175 (2%)
Frame = +2
Query: 11 TASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAG 190
T S+SP + A+ + +P +P S G + SP SP Y+ SP + G +
Sbjct: 1724 TPSYSPTSPNYSASPQYSPA--SPAYSQTG---VKYSPTSPTYSPPSPSYDG------SP 1772
Query: 191 GAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSPG--YSPTSPSVGA---RGGPAAG 355
G+ Y P SP Y SP YSP++P + SSP +SP YSPT + A R P
Sbjct: 1773 GSPQYTPGSPQYSPASPK--YSPTSPLYSPSSPQHSPSNQYSPTGSTYSATSPRYSPNMS 1830
Query: 356 YASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
SP S Y PTSP Y A YSP+SP YSP +P++ + +SPAY P S
Sbjct: 1831 IYSPSSTKYSPTSPTYT------PTARNYSPTSPMYSPTAPSHYSPTSPAYSPSS 1879
Score = 87.8 bits (216), Expect = 4e-16
Identities = 66/168 (39%), Positives = 81/168 (48%), Gaps = 16/168 (9%)
Frame = +2
Query: 53 GRATPGRMTPGRSP-AGRFTPRMSPASPGYAAMSP---RFGGGLGGGPAGGAGAYAPASP 220
G +TP MTP +P TPR +AM+P F +G + +++PA P
Sbjct: 1496 GGSTPS-MTPPMTPWVNCNTPRYFSPPGHVSAMTPGGPSFSPSAASDASGMSPSWSPAHP 1554
Query: 221 AYMATSPGMGYSPSTPALAVSSPGYSPGYSPTSPSVGAR--GGPAAGYASPQSPGYVPTS 394
+SPG SP PA SP SP YSPTSP+ A GG + Y SP SP Y PTS
Sbjct: 1555 GSSPSSPGPSMSPYFPA----SPSVSPSYSPTSPNYTASSPGGASPNY-SPSSPNYSPTS 1609
Query: 395 PAYARPGTVVAAANV------YSPSSPAYSPFSPNYAAA----SSPAY 508
P YA P N YSPSS YSP SP Y+ SSP++
Sbjct: 1610 PLYASPRYASTTPNFNPQSTGYSPSSSGYSPTSPGYSPTAQFQSSPSF 1657
Score = 83.2 bits (204), Expect = 1e-14
Identities = 66/206 (32%), Positives = 87/206 (42%), Gaps = 36/206 (17%)
Frame = +2
Query: 11 TASFSPIMSSADAAGRA-TPGRM-TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGP 184
TA F S A + +PG +P S +P SP SP Y+ SP +
Sbjct: 1648 TAQFQSSPSFAGSGSNIYSPGNAYSPSSSNYSPNSPSYSPTSPSYSPSSPSY-------- 1699
Query: 185 AGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYS---------------------- 298
+ + Y+P SP+Y TSP Y+P TP+ + +SP YS
Sbjct: 1700 SPTSPCYSPTSPSYSPTSPN--YTPVTPSYSPTSPNYSASPQYSPASPAYSQTGVKYSPT 1757
Query: 299 -PGYSPTSPSVGARGG-----PAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPA 460
P YSP SPS G P + SP SP Y PTSP Y+ + +N YSP+
Sbjct: 1758 SPTYSPPSPSYDGSPGSPQYTPGSPQYSPASPKYSPTSPLYSPSSPQHSPSNQYSPTGST 1817
Query: 461 YSPFSPNYA------AASSPAYQPPS 520
YS SP Y+ + SS Y P S
Sbjct: 1818 YSATSPRYSPNMSIYSPSSTKYSPTS 1843
Score = 66.6 bits (161), Expect = 1e-09
Identities = 49/131 (37%), Positives = 65/131 (49%), Gaps = 4/131 (3%)
Frame = +2
Query: 23 SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
SP + + + TPG +P SPA +P+ SP SP Y+ SP+ P G
Sbjct: 1765 SPSYDGSPGSPQYTPG--SPQYSPA---SPKYSPTSPLYSPSSPQHSPSNQYSPTGST-- 1817
Query: 203 YAPASPAYMATSPGMG-YSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQ 370
Y+ SP Y SP M YSPS+ + +SP Y+P YSPTSP A + SP
Sbjct: 1818 YSATSPRY---SPNMSIYSPSSTKYSPTSPTYTPTARNYSPTSPMYSPT---APSHYSPT 1871
Query: 371 SPGYVPTSPAY 403
SP Y P+SP +
Sbjct: 1872 SPAYSPSSPTF 1882
[156][TOP]
>UniRef100_A9UNH9 DNA-directed RNA polymerase n=1 Tax=Drosophila melanogaster
RepID=A9UNH9_DROME
Length = 1887
Score = 97.8 bits (242), Expect = 4e-19
Identities = 70/200 (35%), Positives = 96/200 (48%), Gaps = 28/200 (14%)
Frame = +2
Query: 5 NATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSP-----ASPGYAAMSPRFGGG 169
+ + S+SP + A+ +PG +P SP+ +P SP ASP YA+ +P F
Sbjct: 1574 SVSPSYSPTSPNYTAS---SPGGASPNYSPS---SPNYSPTSPLYASPRYASTTPNFNPQ 1627
Query: 170 LGGGPAGGAGAYAPASPAYMAT-----------------SPGMGYSPSTPALAVSSPGYS 298
G +G Y+P SP Y T SPG YSPS+ + +SP YS
Sbjct: 1628 STGYSPSSSG-YSPTSPVYSPTVQFQSSPSFAGSGSNIYSPGNAYSPSSSNYSPNSPSYS 1686
Query: 299 P---GYSPTSPSVGARG---GPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPA 460
P YSP+SPS P + SP SP Y P +P+Y+ +A+ YSP+SPA
Sbjct: 1687 PTSPSYSPSSPSYSPTSPCYSPTSPSYSPTSPNYTPVTPSYSPTSPNYSASPQYSPASPA 1746
Query: 461 YSPFSPNYAAASSPAYQPPS 520
YS Y + +SP Y PPS
Sbjct: 1747 YSQTGVKY-SPTSPTYSPPS 1765
Score = 97.1 bits (240), Expect = 7e-19
Identities = 77/192 (40%), Positives = 103/192 (53%), Gaps = 24/192 (12%)
Frame = +2
Query: 17 SFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGA 196
SFSP +S DA+G M+P SPA P SP+SPG +MSP F P+
Sbjct: 1533 SFSPSAAS-DASG------MSPSWSPAH---PGSSPSSPG-PSMSPYFPASPSVSPS--- 1578
Query: 197 GAYAPASPAYMATSPG---MGYSPSTPALAVSSPGY-SPGYSPTSPSVGARGGPAAGYAS 364
Y+P SP Y A+SPG YSPS+P + +SP Y SP Y+ T+P+ + + GY S
Sbjct: 1579 --YSPTSPNYTASSPGGASPNYSPSSPNYSPTSPLYASPRYASTTPNFNPQ---STGY-S 1632
Query: 365 PQSPGYVPTSPAYA-------------------RPGTVVA-AANVYSPSSPAYSPFSPNY 484
P S GY PTSP Y+ PG + +++ YSP+SP+YSP SP+Y
Sbjct: 1633 PSSSGYSPTSPVYSPTVQFQSSPSFAGSGSNIYSPGNAYSPSSSNYSPNSPSYSPTSPSY 1692
Query: 485 AAASSPAYQPPS 520
+ SSP+Y P S
Sbjct: 1693 -SPSSPSYSPTS 1703
Score = 94.4 bits (233), Expect = 4e-18
Identities = 65/175 (37%), Positives = 87/175 (49%), Gaps = 5/175 (2%)
Frame = +2
Query: 11 TASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAG 190
T S+SP + A+ + +P +P S G + SP SP Y+ SP + G +
Sbjct: 1724 TPSYSPTSPNYSASPQYSPA--SPAYSQTG---VKYSPTSPTYSPPSPSYDG------SP 1772
Query: 191 GAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSPG--YSPTSPSVGA---RGGPAAG 355
G+ Y P SP Y SP YSP++P + SSP +SP YSPT + A R P
Sbjct: 1773 GSPQYTPGSPQYSPASPK--YSPTSPLYSPSSPQHSPSNQYSPTGSTYSATSPRYSPNMS 1830
Query: 356 YASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
SP S Y PTSP Y A YSP+ P YSP +P++ + +SPAY P S
Sbjct: 1831 IYSPSSTKYSPTSPTYT------PTARNYSPTPPMYSPTAPSHYSPTSPAYSPSS 1879
Score = 88.2 bits (217), Expect = 3e-16
Identities = 67/168 (39%), Positives = 82/168 (48%), Gaps = 16/168 (9%)
Frame = +2
Query: 53 GRATPGRMTPGRSP-AGRFTPRMSPASPGYAAMSP---RFGGGLGGGPAGGAGAYAPASP 220
G +TP MTP +P A TPR +AM+P F +G + +++PA P
Sbjct: 1496 GGSTPS-MTPPMTPWANCNTPRYFSPPGHVSAMTPGGPSFSPSAASDASGMSPSWSPAHP 1554
Query: 221 AYMATSPGMGYSPSTPALAVSSPGYSPGYSPTSPSVGAR--GGPAAGYASPQSPGYVPTS 394
+SPG SP PA SP SP YSPTSP+ A GG + Y SP SP Y PTS
Sbjct: 1555 GSSPSSPGPSMSPYFPA----SPSVSPSYSPTSPNYTASSPGGASPNY-SPSSPNYSPTS 1609
Query: 395 PAYARPGTVVAAANV------YSPSSPAYSPFSPNYAAA----SSPAY 508
P YA P N YSPSS YSP SP Y+ SSP++
Sbjct: 1610 PLYASPRYASTTPNFNPQSTGYSPSSSGYSPTSPVYSPTVQFQSSPSF 1657
Score = 82.4 bits (202), Expect = 2e-14
Identities = 61/185 (32%), Positives = 87/185 (47%), Gaps = 18/185 (9%)
Frame = +2
Query: 20 FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAG 199
+SP + + ++ +P +P SP +P SP+SP Y+ SP + + +
Sbjct: 1665 YSPGNAYSPSSSNYSPN--SPSYSPT---SPSYSPSSPSYSPTSPCYSP-TSPSYSPTSP 1718
Query: 200 AYAPASPAYMATSPGMG----YSPSTPALAVSSPGYSPG---YSPTSPSVGARGG----- 343
Y P +P+Y TSP YSP++PA + + YSP YSP SPS G
Sbjct: 1719 NYTPVTPSYSPTSPNYSASPQYSPASPAYSQTGVKYSPTSPTYSPPSPSYDGSPGSPQYT 1778
Query: 344 PAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYA------AASSPA 505
P + SP SP Y PTSP Y+ + +N YSP+ YS SP Y+ + SS
Sbjct: 1779 PGSPQYSPASPKYSPTSPLYSPSSPQHSPSNQYSPTGSTYSATSPRYSPNMSIYSPSSTK 1838
Query: 506 YQPPS 520
Y P S
Sbjct: 1839 YSPTS 1843
Score = 64.7 bits (156), Expect = 4e-09
Identities = 48/131 (36%), Positives = 64/131 (48%), Gaps = 4/131 (3%)
Frame = +2
Query: 23 SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
SP + + + TPG +P SPA +P+ SP SP Y+ SP+ P G
Sbjct: 1765 SPSYDGSPGSPQYTPG--SPQYSPA---SPKYSPTSPLYSPSSPQHSPSNQYSPTGST-- 1817
Query: 203 YAPASPAYMATSPGMG-YSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQ 370
Y+ SP Y SP M YSPS+ + +SP Y+P YSPT P A + SP
Sbjct: 1818 YSATSPRY---SPNMSIYSPSSTKYSPTSPTYTPTARNYSPTPPMYSPT---APSHYSPT 1871
Query: 371 SPGYVPTSPAY 403
SP Y P+SP +
Sbjct: 1872 SPAYSPSSPTF 1882
[157][TOP]
>UniRef100_O96446 DNA-directed RNA polymerase n=1 Tax=Vairimorpha necatrix
RepID=O96446_9MICR
Length = 1605
Score = 97.8 bits (242), Expect = 4e-19
Identities = 65/170 (38%), Positives = 91/170 (53%), Gaps = 4/170 (2%)
Frame = +2
Query: 23 SPIMSSAD-AAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAG 199
SP+ + ++G +P + G A + T SP SP Y+ SP + + +
Sbjct: 1436 SPVSENLSISSGNWSPAYLVEGNRYAPK-TSLYSPTSPTYSPTSPTY--------SPTSP 1486
Query: 200 AYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQ 370
Y+P SP Y TSP YSP++P + +SP YSP YSPTSPS P + SP
Sbjct: 1487 TYSPTSPTYSPTSPT--YSPTSPTYSPTSPSYSPTSPSYSPTSPSY----SPTSPSYSPT 1540
Query: 371 SPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
SP Y PTSP+Y+ + YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1541 SPSYSPTSPSYS------PTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 1583
Score = 97.4 bits (241), Expect = 5e-19
Identities = 61/151 (40%), Positives = 82/151 (54%), Gaps = 3/151 (1%)
Frame = +2
Query: 71 RMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMG 250
R P S +P SP SP Y+ SP + + + Y+P SP Y TSP
Sbjct: 1459 RYAPKTSLYSPTSPTYSPTSPTYSPTSPTY--------SPTSPTYSPTSPTYSPTSPT-- 1508
Query: 251 YSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTV 421
YSP++P+ + +SP YSP YSPTSPS P + SP SP Y PTSP+Y+
Sbjct: 1509 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYS----PTSPSYSPTSPSYSPTSPSYS----- 1559
Query: 422 VAAANVYSPSSPAYSPFSPNYAAASSPAYQP 514
+ YSP+SP+YSP SP+Y + +SP+Y P
Sbjct: 1560 -PTSPSYSPTSPSYSPTSPSY-SPTSPSYSP 1588
Score = 79.3 bits (194), Expect = 1e-13
Identities = 55/156 (35%), Positives = 72/156 (46%), Gaps = 3/156 (1%)
Frame = +2
Query: 23 SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
SP S T +P +P SP SP Y+ SP + + + +
Sbjct: 1471 SPTYSPTSPTYSPTSPTYSPTSPTYSPTSPTYSPTSPTYSPTSPSY--------SPTSPS 1522
Query: 203 YAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQS 373
Y+P SP+Y TSP YSP++P+ + +SP YSP YSPTSPS SP S
Sbjct: 1523 YSPTSPSYSPTSPS--YSPTSPSYSPTSPSYSPTSPSYSPTSPSY-----------SPTS 1569
Query: 374 PGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPN 481
P Y PTSP+ YSP+SP+YSP N
Sbjct: 1570 PSYSPTSPS-------------YSPTSPSYSPTYDN 1592
Score = 63.9 bits (154), Expect = 6e-09
Identities = 38/91 (41%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Frame = +2
Query: 251 YSPSTPALAVSSPGYSPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPG-TVVA 427
+SP + L++SS +SP Y G R P SP SP Y PTSP Y+ T
Sbjct: 1435 HSPVSENLSISSGNWSPAYLVE----GNRYAPKTSLYSPTSPTYSPTSPTYSPTSPTYSP 1490
Query: 428 AANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
+ YSP+SP YSP SP Y + +SP+Y P S
Sbjct: 1491 TSPTYSPTSPTYSPTSPTY-SPTSPSYSPTS 1520
[158][TOP]
>UniRef100_C4JY44 DNA-directed RNA polymerase n=1 Tax=Uncinocarpus reesii 1704
RepID=C4JY44_UNCRE
Length = 1747
Score = 97.8 bits (242), Expect = 4e-19
Identities = 69/183 (37%), Positives = 86/183 (46%), Gaps = 35/183 (19%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMG-- 250
+PG SP+ + SP SPG SPRF G PA + ++AP SPAY TSPG G
Sbjct: 1530 SPGYSPSSGY----SPTSPGMGITSPRFMTSPGFSPA--SPSFAPTSPAYSPTSPGYGQA 1583
Query: 251 -------YSPSTPALAVSSPGYSP-----------------GYSPTSPSVGARGGPAAGY 358
YSP++P + +SP YSP YSPTSP++G G
Sbjct: 1584 QSPTSPSYSPTSPGFSPTSPSYSPTSPSFSPASPAFSPTSPSYSPTSPALGGVTGRHLSP 1643
Query: 359 ASPQSPGYVPTSPAYARPGTVVAAANVYSPSSP-AYSPFSPNYAAASS--------PAYQ 511
SP SP Y PTSP +SP+SP AYSP SPN+A + + P Y
Sbjct: 1644 TSPTSPKYTPTSPG-------------WSPTSPDAYSPTSPNFAGSPTSPGWSLLPPGYS 1690
Query: 512 PPS 520
P S
Sbjct: 1691 PTS 1693
Score = 93.6 bits (231), Expect = 8e-18
Identities = 61/171 (35%), Positives = 84/171 (49%), Gaps = 16/171 (9%)
Frame = +2
Query: 32 MSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAP 211
+SS D + +P T +PAG FT P G++ R GG G P +P
Sbjct: 1472 ISSPDPDSQFSPIGQTGSETPAG-FTEYQPPGFGGFSPAGARSPGG-GYSPTSPFNT-SP 1528
Query: 212 ASPAYMATSPGMGYSPSTPALAVSSPGY----------------SPGYSPTSPSVGARGG 343
SP Y SP GYSP++P + ++SP + SP YSPTSP G
Sbjct: 1529 TSPGY---SPSSGYSPTSPGMGITSPRFMTSPGFSPASPSFAPTSPAYSPTSPGYGQAQS 1585
Query: 344 PAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAAS 496
P + SP SPG+ PTSP+Y+ + +SP+SPA+SP SP+Y+ S
Sbjct: 1586 PTSPSYSPTSPGFSPTSPSYS------PTSPSFSPASPAFSPTSPSYSPTS 1630
Score = 75.1 bits (183), Expect = 3e-12
Identities = 64/193 (33%), Positives = 89/193 (46%), Gaps = 24/193 (12%)
Frame = +2
Query: 8 ATASFSPIMSSADAAGRATPGR------MTPGRSPAGRFTPRMSPASPGYAAMSPRFGGG 169
A+ SF+P ++ A +PG +P SP +P SP SP Y+ SP F
Sbjct: 1562 ASPSFAP---TSPAYSPTSPGYGQAQSPTSPSYSPT---SPGFSPTSPSYSPTSPSFS-- 1613
Query: 170 LGGGPAGGAGAYAPASPAYMATSPGMG---------YSPSTPALAVSSPGYSP----GYS 310
PA + A++P SP+Y TSP +G SP++P +SPG+SP YS
Sbjct: 1614 ----PA--SPAFSPTSPSYSPTSPALGGVTGRHLSPTSPTSPKYTPTSPGWSPTSPDAYS 1667
Query: 311 PTSPSVGARGGPAAGYASPQSPGYVPTSPAY-----ARPGTVVAAANVYSPSSPAYSPFS 475
PTSP+ G P + S PGY PTSP Y A + ++V P P Y +
Sbjct: 1668 PTSPNFA--GSPTSPGWSLLPPGYSPTSPTYNPNISAPVKLTLGLSDVLFPIYP-YLSTT 1724
Query: 476 PNYAAASSPAYQP 514
P Y +S + P
Sbjct: 1725 PKYLCTTSCLFYP 1737
[159][TOP]
>UniRef100_P04052 DNA-directed RNA polymerase II subunit RPB1 n=2 Tax=Drosophila
melanogaster RepID=RPB1_DROME
Length = 1887
Score = 97.8 bits (242), Expect = 4e-19
Identities = 70/200 (35%), Positives = 96/200 (48%), Gaps = 28/200 (14%)
Frame = +2
Query: 5 NATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSP-----ASPGYAAMSPRFGGG 169
+ + S+SP + A+ +PG +P SP+ +P SP ASP YA+ +P F
Sbjct: 1574 SVSPSYSPTSPNYTAS---SPGGASPNYSPS---SPNYSPTSPLYASPRYASTTPNFNPQ 1627
Query: 170 LGGGPAGGAGAYAPASPAYMAT-----------------SPGMGYSPSTPALAVSSPGYS 298
G +G Y+P SP Y T SPG YSPS+ + +SP YS
Sbjct: 1628 STGYSPSSSG-YSPTSPVYSPTVQFQSSPSFAGSGSNIYSPGNAYSPSSSNYSPNSPSYS 1686
Query: 299 P---GYSPTSPSVGARG---GPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPA 460
P YSP+SPS P + SP SP Y P +P+Y+ +A+ YSP+SPA
Sbjct: 1687 PTSPSYSPSSPSYSPTSPCYSPTSPSYSPTSPNYTPVTPSYSPTSPNYSASPQYSPASPA 1746
Query: 461 YSPFSPNYAAASSPAYQPPS 520
YS Y + +SP Y PPS
Sbjct: 1747 YSQTGVKY-SPTSPTYSPPS 1765
Score = 97.1 bits (240), Expect = 7e-19
Identities = 77/192 (40%), Positives = 103/192 (53%), Gaps = 24/192 (12%)
Frame = +2
Query: 17 SFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGA 196
SFSP +S DA+G M+P SPA P SP+SPG +MSP F P+
Sbjct: 1533 SFSPSAAS-DASG------MSPSWSPAH---PGSSPSSPG-PSMSPYFPASPSVSPS--- 1578
Query: 197 GAYAPASPAYMATSPG---MGYSPSTPALAVSSPGY-SPGYSPTSPSVGARGGPAAGYAS 364
Y+P SP Y A+SPG YSPS+P + +SP Y SP Y+ T+P+ + + GY S
Sbjct: 1579 --YSPTSPNYTASSPGGASPNYSPSSPNYSPTSPLYASPRYASTTPNFNPQ---STGY-S 1632
Query: 365 PQSPGYVPTSPAYA-------------------RPGTVVA-AANVYSPSSPAYSPFSPNY 484
P S GY PTSP Y+ PG + +++ YSP+SP+YSP SP+Y
Sbjct: 1633 PSSSGYSPTSPVYSPTVQFQSSPSFAGSGSNIYSPGNAYSPSSSNYSPNSPSYSPTSPSY 1692
Query: 485 AAASSPAYQPPS 520
+ SSP+Y P S
Sbjct: 1693 -SPSSPSYSPTS 1703
Score = 96.3 bits (238), Expect = 1e-18
Identities = 66/175 (37%), Positives = 88/175 (50%), Gaps = 5/175 (2%)
Frame = +2
Query: 11 TASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAG 190
T S+SP + A+ + +P +P S G + SP SP Y+ SP + G +
Sbjct: 1724 TPSYSPTSPNYSASPQYSPA--SPAYSQTG---VKYSPTSPTYSPPSPSYDG------SP 1772
Query: 191 GAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSPG--YSPTSPSVGA---RGGPAAG 355
G+ Y P SP Y SP YSP++P + SSP +SP YSPT + A R P
Sbjct: 1773 GSPQYTPGSPQYSPASPK--YSPTSPLYSPSSPQHSPSNQYSPTGSTYSATSPRYSPNMS 1830
Query: 356 YASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
SP S Y PTSP Y A YSP+SP YSP +P++ + +SPAY P S
Sbjct: 1831 IYSPSSTKYSPTSPTYT------PTARNYSPTSPMYSPTAPSHYSPTSPAYSPSS 1879
Score = 88.2 bits (217), Expect = 3e-16
Identities = 67/168 (39%), Positives = 82/168 (48%), Gaps = 16/168 (9%)
Frame = +2
Query: 53 GRATPGRMTPGRSP-AGRFTPRMSPASPGYAAMSP---RFGGGLGGGPAGGAGAYAPASP 220
G +TP MTP +P A TPR +AM+P F +G + +++PA P
Sbjct: 1496 GGSTPS-MTPPMTPWANCNTPRYFSPPGHVSAMTPGGPSFSPSAASDASGMSPSWSPAHP 1554
Query: 221 AYMATSPGMGYSPSTPALAVSSPGYSPGYSPTSPSVGAR--GGPAAGYASPQSPGYVPTS 394
+SPG SP PA SP SP YSPTSP+ A GG + Y SP SP Y PTS
Sbjct: 1555 GSSPSSPGPSMSPYFPA----SPSVSPSYSPTSPNYTASSPGGASPNY-SPSSPNYSPTS 1609
Query: 395 PAYARPGTVVAAANV------YSPSSPAYSPFSPNYAAA----SSPAY 508
P YA P N YSPSS YSP SP Y+ SSP++
Sbjct: 1610 PLYASPRYASTTPNFNPQSTGYSPSSSGYSPTSPVYSPTVQFQSSPSF 1657
Score = 82.4 bits (202), Expect = 2e-14
Identities = 61/185 (32%), Positives = 87/185 (47%), Gaps = 18/185 (9%)
Frame = +2
Query: 20 FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAG 199
+SP + + ++ +P +P SP +P SP+SP Y+ SP + + +
Sbjct: 1665 YSPGNAYSPSSSNYSPN--SPSYSPT---SPSYSPSSPSYSPTSPCYSP-TSPSYSPTSP 1718
Query: 200 AYAPASPAYMATSPGMG----YSPSTPALAVSSPGYSPG---YSPTSPSVGARGG----- 343
Y P +P+Y TSP YSP++PA + + YSP YSP SPS G
Sbjct: 1719 NYTPVTPSYSPTSPNYSASPQYSPASPAYSQTGVKYSPTSPTYSPPSPSYDGSPGSPQYT 1778
Query: 344 PAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYA------AASSPA 505
P + SP SP Y PTSP Y+ + +N YSP+ YS SP Y+ + SS
Sbjct: 1779 PGSPQYSPASPKYSPTSPLYSPSSPQHSPSNQYSPTGSTYSATSPRYSPNMSIYSPSSTK 1838
Query: 506 YQPPS 520
Y P S
Sbjct: 1839 YSPTS 1843
Score = 66.6 bits (161), Expect = 1e-09
Identities = 49/131 (37%), Positives = 65/131 (49%), Gaps = 4/131 (3%)
Frame = +2
Query: 23 SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
SP + + + TPG +P SPA +P+ SP SP Y+ SP+ P G
Sbjct: 1765 SPSYDGSPGSPQYTPG--SPQYSPA---SPKYSPTSPLYSPSSPQHSPSNQYSPTGST-- 1817
Query: 203 YAPASPAYMATSPGMG-YSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQ 370
Y+ SP Y SP M YSPS+ + +SP Y+P YSPTSP A + SP
Sbjct: 1818 YSATSPRY---SPNMSIYSPSSTKYSPTSPTYTPTARNYSPTSPMYSPT---APSHYSPT 1871
Query: 371 SPGYVPTSPAY 403
SP Y P+SP +
Sbjct: 1872 SPAYSPSSPTF 1882
[160][TOP]
>UniRef100_B4JXA6 DNA-directed RNA polymerase n=1 Tax=Drosophila grimshawi
RepID=B4JXA6_DROGR
Length = 1889
Score = 97.1 bits (240), Expect = 7e-19
Identities = 77/194 (39%), Positives = 103/194 (53%), Gaps = 26/194 (13%)
Frame = +2
Query: 17 SFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGA 196
SFSP +S DA+G M+P SPA P SP+SPG +MSP F P+
Sbjct: 1533 SFSPSAAS-DASG------MSPSWSPAH---PGSSPSSPG-PSMSPYFPASPSVSPS--- 1578
Query: 197 GAYAPASPAYMATSPG---MGYSPSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGY 358
Y+P SP Y A+SPG YSPS+P + +SP Y SP Y+ +P+ A+ + GY
Sbjct: 1579 --YSPTSPNYTASSPGGASPNYSPSSPNYSPTSPLYTATSPRYASATPNFNAQ---STGY 1633
Query: 359 ASPQSPGYVPTSPAYA-------------------RPGTVVA-AANVYSPSSPAYSPFSP 478
SP S GY PTSP Y+ PG + +++ YSP+SP+YSP SP
Sbjct: 1634 -SPSSSGYSPTSPVYSPTSNFQSSPSFAGSGSNLYSPGNAYSPSSSNYSPNSPSYSPMSP 1692
Query: 479 NYAAASSPAYQPPS 520
+Y + SSP+Y P S
Sbjct: 1693 SY-SPSSPSYSPTS 1705
Score = 95.9 bits (237), Expect = 2e-18
Identities = 66/175 (37%), Positives = 87/175 (49%), Gaps = 5/175 (2%)
Frame = +2
Query: 11 TASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAG 190
T S+SP + A+ +P +P S G + SP SP Y+ SP + G +
Sbjct: 1726 TPSYSPTSPNYSASPHYSPA--SPAYSQTG---VKYSPTSPTYSPPSPSYDG------SP 1774
Query: 191 GAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSPG--YSPTSPSVGA---RGGPAAG 355
G+ Y P SP Y SP YSP++P + SSP +SP YSPT + A R P
Sbjct: 1775 GSPQYTPGSPQYSPASPK--YSPTSPLYSPSSPQHSPSNQYSPTGSTYSATSPRYSPNMS 1832
Query: 356 YASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
SP S Y PTSP Y A YSP+SP YSP +P++ + +SPAY P S
Sbjct: 1833 IYSPSSTKYSPTSPTYT------PTARNYSPTSPMYSPTAPSHYSPTSPAYSPSS 1881
Score = 94.4 bits (233), Expect = 4e-18
Identities = 69/205 (33%), Positives = 92/205 (44%), Gaps = 33/205 (16%)
Frame = +2
Query: 5 NATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGP 184
+ + S+SP + A+ +PG +P SP+ +P SP SP Y A SPR+
Sbjct: 1574 SVSPSYSPTSPNYTAS---SPGGASPNYSPS---SPNYSPTSPLYTATSPRYASATPNFN 1627
Query: 185 AGGAG------AYAPASPAYMATS-----------------PGMGYSPSTPALAVSSPGY 295
A G Y+P SP Y TS PG YSPS+ + +SP Y
Sbjct: 1628 AQSTGYSPSSSGYSPTSPVYSPTSNFQSSPSFAGSGSNLYSPGNAYSPSSSNYSPNSPSY 1687
Query: 296 SP----------GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYS 445
SP YSPTSP P + SP SP Y +P+Y+ +A+ YS
Sbjct: 1688 SPMSPSYSPSSPSYSPTSPCY----SPTSPSYSPTSPKYTAVTPSYSPTSPNYSASPHYS 1743
Query: 446 PSSPAYSPFSPNYAAASSPAYQPPS 520
P+SPAYS Y + +SP Y PPS
Sbjct: 1744 PASPAYSQTGVKY-SPTSPTYSPPS 1767
Score = 84.0 bits (206), Expect = 6e-15
Identities = 63/163 (38%), Positives = 78/163 (47%), Gaps = 14/163 (8%)
Frame = +2
Query: 53 GRATPGRMTPGRSP-AGRFTPRMSPASPGYAAMSP---RFGGGLGGGPAGGAGAYAPASP 220
G +TP MTP +P TPR +AM+P F +G + +++PA P
Sbjct: 1496 GGSTPS-MTPPMTPWVNCHTPRYFSPPGHVSAMTPGGPSFSPSAASDASGMSPSWSPAHP 1554
Query: 221 AYMATSPGMGYSPSTPALAVSSPGYSPGYSPTSPSVGAR--GGPAAGYASPQSPGYVPTS 394
+SPG SP PA SP SP YSPTSP+ A GG + Y SP SP Y PTS
Sbjct: 1555 GSSPSSPGPSMSPYFPA----SPSVSPSYSPTSPNYTASSPGGASPNY-SPSSPNYSPTS 1609
Query: 395 PAYARPGTVVAAANV--------YSPSSPAYSPFSPNYAAASS 499
P Y A+A YSPSS YSP SP Y+ S+
Sbjct: 1610 PLYTATSPRYASATPNFNAQSTGYSPSSSGYSPTSPVYSPTSN 1652
Score = 82.4 bits (202), Expect = 2e-14
Identities = 63/179 (35%), Positives = 85/179 (47%), Gaps = 11/179 (6%)
Frame = +2
Query: 17 SFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGA 196
S+SP MS + + + +P SP +P SP SP Y A++P + A +
Sbjct: 1686 SYSP-MSPSYSPSSPSYSPTSPCYSPT---SPSYSPTSPKYTAVTPSYSPTSPNYSA--S 1739
Query: 197 GAYAPASPAYMATSPGMGYSPSTPALAVSSPGY-----SPGYSPTSPSVGARGGPAAGYA 361
Y+PASPAY T G+ YSP++P + SP Y SP Y+P SP
Sbjct: 1740 PHYSPASPAYSQT--GVKYSPTSPTYSPPSPSYDGSPGSPQYTPGSPQY----------- 1786
Query: 362 SPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYA------AASSPAYQPPS 520
SP SP Y PTSP Y+ + +N YSP+ YS SP Y+ + SS Y P S
Sbjct: 1787 SPASPKYSPTSPLYSPSSPQHSPSNQYSPTGSTYSATSPRYSPNMSIYSPSSTKYSPTS 1845
Score = 66.6 bits (161), Expect = 1e-09
Identities = 49/131 (37%), Positives = 65/131 (49%), Gaps = 4/131 (3%)
Frame = +2
Query: 23 SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
SP + + + TPG +P SPA +P+ SP SP Y+ SP+ P G
Sbjct: 1767 SPSYDGSPGSPQYTPG--SPQYSPA---SPKYSPTSPLYSPSSPQHSPSNQYSPTGST-- 1819
Query: 203 YAPASPAYMATSPGMG-YSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQ 370
Y+ SP Y SP M YSPS+ + +SP Y+P YSPTSP A + SP
Sbjct: 1820 YSATSPRY---SPNMSIYSPSSTKYSPTSPTYTPTARNYSPTSPMYSPT---APSHYSPT 1873
Query: 371 SPGYVPTSPAY 403
SP Y P+SP +
Sbjct: 1874 SPAYSPSSPTF 1884
[161][TOP]
>UniRef100_A2QAT7 DNA-directed RNA polymerase n=1 Tax=Aspergillus niger CBS 513.88
RepID=A2QAT7_ASPNC
Length = 1747
Score = 96.7 bits (239), Expect = 9e-19
Identities = 68/172 (39%), Positives = 88/172 (51%), Gaps = 5/172 (2%)
Frame = +2
Query: 20 FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRF-GGGLGGGPAGGA 196
FSP +S ++P P SP T SP SPG A SPRF G PA +
Sbjct: 1554 FSPAATSPAGYSPSSPFSANP-TSPGYSPTSSYSPTSPGMAITSPRFMSTSPGFSPA--S 1610
Query: 197 GAYAPASPAYMATSPGMGY-SPSTPALAVSSPGYSPGYSPTSPSVGARG---GPAAGYAS 364
++AP SPAY TSP G SP++P+ + +SPG+SP TSP+ PA+ S
Sbjct: 1611 PSFAPTSPAYSPTSPAYGQASPTSPSYSPTSPGFSP----TSPNYSPTSPSFSPASPAFS 1666
Query: 365 PQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
P SP Y PTSPA G ++ SP+SP Y+P SP ++ S Y P S
Sbjct: 1667 PTSPSYSPTSPAVGGVGRHLSPT---SPTSPKYTPTSPGWSPTSPQTYSPTS 1715
Score = 95.1 bits (235), Expect = 3e-18
Identities = 69/183 (37%), Positives = 97/183 (53%), Gaps = 11/183 (6%)
Frame = +2
Query: 11 TASFSPIMSSADAAGRATPGRMT--PGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGP 184
T+S+SP ++ +P M+ PG SPA +P +P SP Y+ SP +G P
Sbjct: 1582 TSSYSP---TSPGMAITSPRFMSTSPGFSPA---SPSFAPTSPAYSPTSPAYGQASPTSP 1635
Query: 185 AGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARG----- 340
+ Y+P SP + TSP YSP++P+ + +SP +SP YSPTSP+VG G
Sbjct: 1636 S-----YSPTSPGFSPTSPN--YSPTSPSFSPASPAFSPTSPSYSPTSPAVGGVGRHLSP 1688
Query: 341 -GPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPP 517
P + +P SPG+ PTSP P + A SP+SP P SP Y + +SPA+ P
Sbjct: 1689 TSPTSPKYTPTSPGWSPTSPQTYSPTSPNFAG---SPTSPG-GPTSPGY-SPTSPAFSPT 1743
Query: 518 SRR 526
S R
Sbjct: 1744 SPR 1746
Score = 57.8 bits (138), Expect = 5e-07
Identities = 53/158 (33%), Positives = 70/158 (44%), Gaps = 36/158 (22%)
Frame = +2
Query: 155 RFG--GGLGGGPA----GGAGAYAPASP----AYMAT-SPGMGYSPSTPALAVSSPGYSP 301
RFG G +G A G A Y SP AY+ T P +SP A A + G++
Sbjct: 1484 RFGVMGAIGAKDAIISDGAATQYDTGSPMQESAYIGTPDPESNFSPIRQAGAETPGGFTE 1543
Query: 302 ---------GYSPTSPSVGARGGPAAGYASPQSPGYVPTSP-AYARPGTVVA-------- 427
G+SP + S + A+P SPGY PTS + PG +
Sbjct: 1544 YQPTGGFGGGFSPAATSPAGYSPSSPFSANPTSPGYSPTSSYSPTSPGMAITSPRFMSTS 1603
Query: 428 -----AANVYSPSSPAYSPFSPNYAAAS--SPAYQPPS 520
A+ ++P+SPAYSP SP Y AS SP+Y P S
Sbjct: 1604 PGFSPASPSFAPTSPAYSPTSPAYGQASPTSPSYSPTS 1641
[162][TOP]
>UniRef100_Q9HGZ5 DNA-directed RNA polymerase n=2 Tax=Aspergillus RepID=Q9HGZ5_ASPOR
Length = 1748
Score = 96.3 bits (238), Expect = 1e-18
Identities = 66/176 (37%), Positives = 92/176 (52%), Gaps = 9/176 (5%)
Frame = +2
Query: 20 FSPIMSSADAAGRATP---GRMTPGRSPAGRFTPRMSPASPGYAAMSPRFG-GGLGGGPA 187
FSP +S ++P +PG SP+ + SP SPG A SPRF G PA
Sbjct: 1555 FSPAATSPAGYSPSSPFSANPTSPGYSPSSSY----SPTSPGMAMTSPRFSMTSPGFSPA 1610
Query: 188 GGAGAYAPASPAYMATSPGMGY-SPSTPALAVSSPGYSPGYSPTSPSVGARGGPAAGYAS 364
+ ++AP SPAY TSP G SP++P+ + +SPG+SP TSP+ P + S
Sbjct: 1611 --SPSFAPTSPAYSPTSPAYGQASPTSPSYSPTSPGFSP----TSPNY----SPTSPSFS 1660
Query: 365 PQSPGYVPTSPAYARPGTVVAAA----NVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
P SP + PTSP+Y+ + A + SP+SP Y+P SP ++ S Y P S
Sbjct: 1661 PASPAFSPTSPSYSPTSPAIGGAARHLSPTSPTSPKYTPTSPGWSPTSPQTYSPTS 1716
Score = 92.4 bits (228), Expect = 2e-17
Identities = 61/159 (38%), Positives = 85/159 (53%), Gaps = 9/159 (5%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+PG SPA +P +P SP Y+ SP +G P+ Y+P SP + TSP YS
Sbjct: 1604 SPGFSPA---SPSFAPTSPAYSPTSPAYGQASPTSPS-----YSPTSPGFSPTSPN--YS 1653
Query: 257 PSTPALAVSSPGYSP---GYSPTSPSVGARG------GPAAGYASPQSPGYVPTSPAYAR 409
P++P+ + +SP +SP YSPTSP++G P + +P SPG+ PTSP
Sbjct: 1654 PTSPSFSPASPAFSPTSPSYSPTSPAIGGAARHLSPTSPTSPKYTPTSPGWSPTSPQTYS 1713
Query: 410 PGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPSRR 526
P + A SP+SP P SP Y + +SPA+ P S R
Sbjct: 1714 PTSPNFAG---SPTSPG-GPTSPGY-SPTSPAFSPSSPR 1747
Score = 83.2 bits (204), Expect = 1e-14
Identities = 66/162 (40%), Positives = 82/162 (50%), Gaps = 19/162 (11%)
Frame = +2
Query: 92 PAGRFTP--RMSPASPG-YAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPS 262
P F+P + SPG + P GG GGG ++PA ATSP GYSPS
Sbjct: 1524 PESNFSPIRQAGAESPGGFTEYQPT--GGFGGG-------FSPA-----ATSPA-GYSPS 1568
Query: 263 TPALA-VSSPGYSPG--YSPTSPSVGA---RGGPAAGYASPQSPGYVPTSPAYARPGTVV 424
+P A +SPGYSP YSPTSP + R + SP SP + PTSPAY+
Sbjct: 1569 SPFSANPTSPGYSPSSSYSPTSPGMAMTSPRFSMTSPGFSPASPSFAPTSPAYSPTSPAY 1628
Query: 425 AAAN----VYSPSSPAYSPFSPNYAAAS------SPAYQPPS 520
A+ YSP+SP +SP SPNY+ S SPA+ P S
Sbjct: 1629 GQASPTSPSYSPTSPGFSPTSPNYSPTSPSFSPASPAFSPTS 1670
[163][TOP]
>UniRef100_O09451 DNA-directed RNA polymerase (Fragment) n=1 Tax=Bonnemaisonia hamifera
RepID=O09451_9FLOR
Length = 1732
Score = 95.5 bits (236), Expect = 2e-18
Identities = 82/195 (42%), Positives = 97/195 (49%), Gaps = 31/195 (15%)
Frame = +2
Query: 14 ASFSPI-MSSADAAGRATPGRMTPGRSPAGRFTPRMSP---------------ASPGYAA 145
A+FSP M+ A G G +TP +SP +T +SP +SPGYA
Sbjct: 1492 AAFSPTPMTPGGAGGGGGMGGLTPLQSPGREYTVPLSPGGGGTSPFYSQSPYASSPGYAQ 1551
Query: 146 MSPRFG--GGLGGGPAGGAGAYAPASPAYMATSPGMG-YSPSTPALAVSSPG--YSPGYS 310
R GG G G +G +APASPAY TSPG Y+ +PA SPG YSP S
Sbjct: 1552 SPGRMQSPGGAGAYGIGSSGTFAPASPAYRPTSPGPSPYAAQSPA---QSPGVQYSPDKS 1608
Query: 311 --------PTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPG-TVVAAANVYSPSSP-A 460
PT+PS A GG A+ SP SP Y A PG VAA+ YSPSSP A
Sbjct: 1609 RVQVQRAPPTAPS--AAGGGASRSYSPSSPSY--NGRGAASPGANYVAASPGYSPSSPGA 1664
Query: 461 YSPFSPNYAAASSPA 505
YSP SP + SSPA
Sbjct: 1665 YSPSSPAAFSPSSPA 1679
Score = 60.1 bits (144), Expect = 9e-08
Identities = 64/185 (34%), Positives = 79/185 (42%), Gaps = 29/185 (15%)
Frame = +2
Query: 47 AAGRATPGRM-------TPGR--SPAGRFTP-----------RMSPASPGYA-AMSPRFG 163
A G ATPGR TPG SPA TP +MSP++ G A + +P
Sbjct: 1442 ARGDATPGRKKAFDARATPGLLYSPAAWGTPLRPRTEQGLDQQMSPSADGAAFSPTPMTP 1501
Query: 164 GGLGGGPAGGAGAYAPASPAYMATSPGMGYS-PSTPALAVSSPGYS-------PGYSPTS 319
GG GGG GG G P SPG Y+ P +P +SP YS PGY+ +
Sbjct: 1502 GGAGGG--GGMGGLTPLQ------SPGREYTVPLSPGGGGTSPFYSQSPYASSPGYAQSP 1553
Query: 320 PSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASS 499
+ + GG A Y S + P SPA Y P+SP SP+ AA S
Sbjct: 1554 GRMQSPGG-AGAYGIGSSGTFAPASPA-------------YRPTSPGPSPY-----AAQS 1594
Query: 500 PAYQP 514
PA P
Sbjct: 1595 PAQSP 1599
[164][TOP]
>UniRef100_B8M2Y2 DNA-directed RNA polymerase n=1 Tax=Talaromyces stipitatus ATCC 10500
RepID=B8M2Y2_TALSN
Length = 1755
Score = 95.1 bits (235), Expect = 3e-18
Identities = 69/192 (35%), Positives = 95/192 (49%), Gaps = 27/192 (14%)
Frame = +2
Query: 20 FSPIMSSADAAGRATP---GRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAG 190
FSP S +P ++PG SP+ + SPASPG + SPRF G P+
Sbjct: 1555 FSPAPQSPGGYSPTSPFNTSPVSPGYSPSSSY----SPASPGMSITSPRFVTSPGFSPSS 1610
Query: 191 G-----AGAYAPASPAYMATSPGMG------------YSPSTPALAVSSPGY---SPGYS 310
+ AY+P SP+Y SP YSPS+P +++SSP + SP YS
Sbjct: 1611 PNFQTTSPAYSPTSPSYQQASPSYSPTSPRFSPSSPNYSPSSPNMSLSSPAFSPTSPTYS 1670
Query: 311 PTSPSVGAR---GGPAAGYASPQSPGYVPTSPAYARPGTVVAAANVY-SPSSPAYSPFSP 478
PTSP++G P + SP SP + PTSP P + N++ SP+SPA SP
Sbjct: 1671 PTSPAIGGTRQFSSPTSPKYSPASPAWSPTSPEIYSP----TSPNIHGSPTSPARGGTSP 1726
Query: 479 NYAAASSPAYQP 514
+Y + +SP Y P
Sbjct: 1727 SY-SPTSPQYNP 1737
Score = 74.3 bits (181), Expect = 5e-12
Identities = 64/195 (32%), Positives = 85/195 (43%), Gaps = 26/195 (13%)
Frame = +2
Query: 14 ASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPG-YAAMSPRFGGGLGGGPAG 190
A FSPI AG TP T + G +P SPG Y+ SP
Sbjct: 1527 AKFSPIRQ----AGSETPAGFTSYQPSQGLGGFSPAPQSPGGYSPTSPF----------- 1571
Query: 191 GAGAYAPASPAYMATSPGMGYSPSTPALA------VSSPGY----------SPGYSPTSP 322
+P SP Y SP YSP++P ++ V+SPG+ SP YSPTSP
Sbjct: 1572 ---NTSPVSPGY---SPSSSYSPASPGMSITSPRFVTSPGFSPSSPNFQTTSPAYSPTSP 1625
Query: 323 S---VGARGGPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSP----- 478
S P + SP SP Y P+SP + ++ +SP+SP YSP SP
Sbjct: 1626 SYQQASPSYSPTSPRFSPSSPNYSPSSP------NMSLSSPAFSPTSPTYSPTSPAIGGT 1679
Query: 479 -NYAAASSPAYQPPS 520
+++ +SP Y P S
Sbjct: 1680 RQFSSPTSPKYSPAS 1694
Score = 63.2 bits (152), Expect = 1e-08
Identities = 47/116 (40%), Positives = 62/116 (53%), Gaps = 1/116 (0%)
Frame = +2
Query: 182 PAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSPGYSPTSPSVGARGGPAAGYA 361
P+ G G ++PA SPG GYSP++P ++ SPGYSP+S
Sbjct: 1548 PSQGLGGFSPAPQ-----SPG-GYSPTSP---FNTSPVSPGYSPSSSY------------ 1586
Query: 362 SPQSPGYVPTSPAYAR-PGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPSRR 526
SP SPG TSP + PG ++ N + +SPAYSP SP+Y A SP+Y P S R
Sbjct: 1587 SPASPGMSITSPRFVTSPGFSPSSPN-FQTTSPAYSPTSPSYQQA-SPSYSPTSPR 1640
[165][TOP]
>UniRef100_Q8SSC4 DNA-directed RNA polymerase II subunit RPB1 n=1 Tax=Encephalitozoon
cuniculi RepID=RPB1_ENCCU
Length = 1599
Score = 95.1 bits (235), Expect = 3e-18
Identities = 55/132 (41%), Positives = 77/132 (58%), Gaps = 3/132 (2%)
Frame = +2
Query: 113 RMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPG 292
R+SP SP Y+ SP + + + +Y+P SP+Y TSP YSP++P+ + +SP
Sbjct: 1465 RLSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YSPTSPSYSPTSPS 1514
Query: 293 YSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAY 463
YSP YSPTSPS P + SP SP Y PTSP+Y+ + YSP+SP+Y
Sbjct: 1515 YSPTSPSYSPTSPSYS----PTSPSYSPTSPSYSPTSPSYS------PTSPSYSPTSPSY 1564
Query: 464 SPFSPNYAAASS 499
SP SP+Y+ + S
Sbjct: 1565 SPTSPSYSVSMS 1576
Score = 87.8 bits (216), Expect = 4e-16
Identities = 50/109 (45%), Positives = 68/109 (62%), Gaps = 4/109 (3%)
Frame = +2
Query: 206 APASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSP 376
+P SP+Y TSP YSP++P+ + +SP YSP YSPTSPS P + SP SP
Sbjct: 1467 SPTSPSYSPTSPS--YSPTSPSYSPTSPSYSPTSPSYSPTSPSY----SPTSPSYSPTSP 1520
Query: 377 GYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
Y PTSP+Y+ + + YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1521 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 1568
Score = 75.1 bits (183), Expect = 3e-12
Identities = 46/104 (44%), Positives = 63/104 (60%), Gaps = 6/104 (5%)
Frame = +2
Query: 227 MATSPGMG--YSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPT 391
MA S +G SP++P+ + +SP YSP YSPTSPS P + SP SP Y PT
Sbjct: 1456 MAYSRDLGERLSPTSPSYSPTSPSYSPTSPSYSPTSPSY----SPTSPSYSPTSPSYSPT 1511
Query: 392 SPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
SP+Y+ + + YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1512 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 1554
Score = 63.5 bits (153), Expect = 8e-09
Identities = 40/109 (36%), Positives = 61/109 (55%), Gaps = 3/109 (2%)
Frame = +2
Query: 203 YAPASPAYMATSPGMGYSPSTPALAVSSPGYSPGYSPTSPS--VGARGGPAAGYASPQSP 376
+ P PA S +PS+ + ++SS +SP + + S +G R P + SP SP
Sbjct: 1424 FKPNEPATPVIS-----TPSSDSFSISSGNWSPTHLEMAYSRDLGERLSPTSPSYSPTSP 1478
Query: 377 GYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
Y PTSP+Y+ + + YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1479 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 1526
[166][TOP]
>UniRef100_UPI000023F34A hypothetical protein FG00916.1 n=1 Tax=Gibberella zeae PH-1
RepID=UPI000023F34A
Length = 1758
Score = 94.4 bits (233), Expect = 4e-18
Identities = 71/205 (34%), Positives = 93/205 (45%), Gaps = 44/205 (21%)
Frame = +2
Query: 38 SADAAGRATP----------GRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGG--- 178
S D G ATP G ++ AG F+P S A +GGG G
Sbjct: 1493 SGDIEGAATPYDTGSPMADSGYLSMSSPAAGNFSPIQGAGSDTPAGFDTVYGGGSVGFGG 1552
Query: 179 ---------GPAGGAGAYAPASP-AYMATSPGMGYSPSTPAL--------AVSSPGYSPG 304
G A + +P SP +Y TSP MGYSP++P + +SP +SP
Sbjct: 1553 TTPMSPYNRGAASPFSSTSPTSPFSYSPTSPNMGYSPTSPLIDGGGMGRYGPTSPSFSPS 1612
Query: 305 ---YSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFS 475
+SPTSP + PA+ SP SP Y PTSP+ R + + A SP+SP+YSP S
Sbjct: 1613 SPSFSPTSPMLRPTS-PASPSYSPTSPSYSPTSPSSPRHYSPTSPAQFNSPTSPSYSPAS 1671
Query: 476 PNYAAAS----------SPAYQPPS 520
PNY+ S SP+Y P S
Sbjct: 1672 PNYSPTSPNVHGAGGPTSPSYSPAS 1696
Score = 92.0 bits (227), Expect = 2e-17
Identities = 65/166 (39%), Positives = 81/166 (48%), Gaps = 10/166 (6%)
Frame = +2
Query: 53 GRATPGRMTPGRSPAGRFTPRMSPASP--GYAAMSPRFGGGLGGGPAGGAGAYAPASPAY 226
G A+P T SP SP SP GY+ SP GG G G Y P SP++
Sbjct: 1562 GAASPFSSTSPTSPFS-----YSPTSPNMGYSPTSPLIDGG-------GMGRYGPTSPSF 1609
Query: 227 MATSPGMGYSPSTPALAVSSPGY------SPGYSPTSPSVGARGGPA--AGYASPQSPGY 382
+SP +SP++P L +SP SP YSPTSPS P A + SP SP Y
Sbjct: 1610 SPSSPS--FSPTSPMLRPTSPASPSYSPTSPSYSPTSPSSPRHYSPTSPAQFNSPTSPSY 1667
Query: 383 VPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
P SP Y+ V A P+SP+YSP SP+++ S AY P S
Sbjct: 1668 SPASPNYSPTSPNVHGAG--GPTSPSYSPASPSWSPTSPEAYSPTS 1711
Score = 90.1 bits (222), Expect = 8e-17
Identities = 63/166 (37%), Positives = 84/166 (50%), Gaps = 10/166 (6%)
Frame = +2
Query: 20 FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAG 199
+SP D G G +P SP+ +P SP SP SP +
Sbjct: 1587 YSPTSPLIDGGGMGRYGPTSPSFSPS---SPSFSPTSPMLRPTSP------------ASP 1631
Query: 200 AYAPASPAYMATSPGMG--YSPSTPAL--AVSSPGYSPG---YSPTSPSVGARGGPAAGY 358
+Y+P SP+Y TSP YSP++PA + +SP YSP YSPTSP+V GGP +
Sbjct: 1632 SYSPTSPSYSPTSPSSPRHYSPTSPAQFNSPTSPSYSPASPNYSPTSPNVHGAGGPTSPS 1691
Query: 359 ASPQSPGYVPTSP-AYA--RPGTVVAAANVYSPSSPAYSPFSPNYA 487
SP SP + PTSP AY+ P + SP+SP+YSP SP ++
Sbjct: 1692 YSPASPSWSPTSPEAYSPTSPTFQRSPTTQQSPTSPSYSPTSPAFS 1737
Score = 70.1 bits (170), Expect = 9e-11
Identities = 59/159 (37%), Positives = 79/159 (49%), Gaps = 8/159 (5%)
Frame = +2
Query: 8 ATASFSPIMSSADAAGRATPGRMTPGRSPA---GRFTPRMSPASPGYAAMSPRFGGGLGG 178
A+ S+SP S ++P +P SPA +P SPASP Y+ SP G G
Sbjct: 1629 ASPSYSPTSPSYSPTSPSSPRHYSP-TSPAQFNSPTSPSYSPASPNYSPTSPNVHGA--G 1685
Query: 179 GPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVS-----SPGYSPGYSPTSPSVGARGG 343
GP + +Y+PASP++ TSP YSP++P S SP SP YSPTSP+
Sbjct: 1686 GPT--SPSYSPASPSWSPTSPE-AYSPTSPTFQRSPTTQQSPT-SPSYSPTSPAF----- 1736
Query: 344 PAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPA 460
SP++PG PGT + N YSP+SP+
Sbjct: 1737 ------SPRTPG----------PGT---SGNQYSPNSPS 1756
[167][TOP]
>UniRef100_Q58EF0 Polr2a protein (Fragment) n=2 Tax=Danio rerio RepID=Q58EF0_DANRE
Length = 161
Score = 93.2 bits (230), Expect = 1e-17
Identities = 61/163 (37%), Positives = 78/163 (47%), Gaps = 3/163 (1%)
Frame = +2
Query: 23 SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
SP S + + T + TP +P +P SP Y+ SP+
Sbjct: 15 SPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYSPTSPK--------------- 59
Query: 203 YAPASPAYMATSPGMGYSPSTPALAVSSPGYSPG---YSPTSPSVGARGGPAAGYASPQS 373
Y+P SP Y TSP YSP+TP + +SP YSP Y+PTSP P + SP S
Sbjct: 60 YSPTSPKYSPTSPT--YSPTTPKYSPTSPTYSPTSPTYTPTSPKYS----PTSPTYSPTS 113
Query: 374 PGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSP 502
P Y PTSP Y+ + YSP+SP YSP SP Y+ A SP
Sbjct: 114 PKYSPTSPTYSPTSP---KGSTYSPTSPGYSPTSPTYSPAISP 153
Score = 92.4 bits (228), Expect = 2e-17
Identities = 61/162 (37%), Positives = 81/162 (50%), Gaps = 12/162 (7%)
Frame = +2
Query: 71 RMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMG 250
R TP +P SP+SP Y+ SP++ + +Y+P+SP Y TSP
Sbjct: 3 RYTPQSPTYTPSSPSYSPSSPSYSPTSPKY--------TPTSPSYSPSSPEYTPTSP--K 52
Query: 251 YSPSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTV 421
YSP++P + +SP Y SP YSPT+P + P + SP SP Y PTSP Y+
Sbjct: 53 YSPTSPKYSPTSPKYSPTSPTYSPTTP----KYSPTSPTYSPTSPTYTPTSPKYS----- 103
Query: 422 VAAANVYSPSSPAYSPFSPNYAAAS---------SPAYQPPS 520
+ YSP+SP YSP SP Y+ S SP Y P S
Sbjct: 104 -PTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTS 144
Score = 61.2 bits (147), Expect = 4e-08
Identities = 38/92 (41%), Positives = 47/92 (51%), Gaps = 1/92 (1%)
Frame = +2
Query: 242 GMGYSPSTPALAVSSPGYSPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPG-T 418
G Y+P +P SSP YSP +SPS SP SP Y PTSP+Y+
Sbjct: 1 GPRYTPQSPTYTPSSPSYSP----SSPSY-----------SPTSPKYTPTSPSYSPSSPE 45
Query: 419 VVAAANVYSPSSPAYSPFSPNYAAASSPAYQP 514
+ YSP+SP YSP SP Y + +SP Y P
Sbjct: 46 YTPTSPKYSPTSPKYSPTSPKY-SPTSPTYSP 76
[168][TOP]
>UniRef100_Q5CUJ2 DNA-directed RNA polymerase (Fragment) n=1 Tax=Cryptosporidium parvum
Iowa II RepID=Q5CUJ2_CRYPV
Length = 1902
Score = 93.2 bits (230), Expect = 1e-17
Identities = 62/160 (38%), Positives = 82/160 (51%), Gaps = 12/160 (7%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP +P SP SP Y+ SP + + + Y+P SP Y TSP YS
Sbjct: 1721 SPHYSPT---SPHYSPTSPHYSPTSPHY--------SPTSPHYSPTSPHYSPTSPH--YS 1767
Query: 257 PSTPALAVSSPGYSPG---YSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVA 427
P++P + +SP YSP YSPTSP P++ + SP SP Y PTSP Y +
Sbjct: 1768 PTSPHYSPTSPHYSPTSPHYSPTSPHYS----PSSPHYSPTSPQYSPTSPNYNPASPNYS 1823
Query: 428 AANVYSPSSPAYSPFSPNYAAAS---------SPAYQPPS 520
+ YSP+SP Y+P SPNY+ +S SP Y P S
Sbjct: 1824 PTSHYSPTSPNYNPTSPNYSPSSPNYISNNSGSPGYSPSS 1863
Score = 79.3 bits (194), Expect = 1e-13
Identities = 61/151 (40%), Positives = 77/151 (50%), Gaps = 9/151 (5%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP +P SP SP Y+ SP + + + Y+P SP Y TSP YS
Sbjct: 1742 SPHYSPT---SPHYSPTSPHYSPTSPHY--------SPTSPHYSPTSPHYSPTSPH--YS 1788
Query: 257 PSTPALAVSSPGYSPG---YSPTSPSVGARG---GPAAGYASPQSPGYVPTSPAYARPGT 418
P++P + SSP YSP YSPTSP+ P + Y SP SP Y PTSP Y+ P +
Sbjct: 1789 PTSPHYSPSSPHYSPTSPQYSPTSPNYNPASPNYSPTSHY-SPTSPNYNPTSPNYS-PSS 1846
Query: 419 VVAAANVYSPSSPAYSPFSPNY---AAASSP 502
+N + SP YSP SP Y A AS P
Sbjct: 1847 PNYISN--NSGSPGYSPSSPQYDPIAVASVP 1875
Score = 75.9 bits (185), Expect = 2e-12
Identities = 68/196 (34%), Positives = 89/196 (45%), Gaps = 28/196 (14%)
Frame = +2
Query: 17 SFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPG-------YAAMSPRFGGGLG 175
S+ P+ S +G+ +P +MTP RSP MSP SPG Y+ MSP
Sbjct: 1579 SYEPM--SPMISGQFSPVQMTP-RSP-------MSPVSPGGIFSPVPYSPMSP------- 1621
Query: 176 GGPAGGAGAYAPASPAYMATSPGMG-------------------YSPSTPALAVSS-PGY 295
+ Y P SP Y A+SP YSPS+P + +
Sbjct: 1622 ---SSPLMDYTPTSPIYAASSPTYNTEVSERARKKYKVNNTLSSYSPSSPLNSDNKISNI 1678
Query: 296 SPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVAAANV-YSPSSPAYSPF 472
SP SPTSP P + + SP SP Y PTSP Y+ + + YSP+SP YSP
Sbjct: 1679 SPDLSPTSPHYS----PTSPHYSPTSPHYSPTSPHYSPTSPHYSPTSPHYSPTSPHYSPT 1734
Query: 473 SPNYAAASSPAYQPPS 520
SP+Y + +SP Y P S
Sbjct: 1735 SPHY-SPTSPHYSPTS 1749
[169][TOP]
>UniRef100_Q5CH45 DNA-directed RNA polymerase n=1 Tax=Cryptosporidium hominis
RepID=Q5CH45_CRYHO
Length = 1895
Score = 93.2 bits (230), Expect = 1e-17
Identities = 62/160 (38%), Positives = 82/160 (51%), Gaps = 12/160 (7%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP +P SP SP Y+ SP + + + Y+P SP Y TSP YS
Sbjct: 1714 SPHYSPT---SPHYSPTSPHYSPTSPHY--------SPTSPHYSPTSPHYSPTSPH--YS 1760
Query: 257 PSTPALAVSSPGYSPG---YSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVA 427
P++P + +SP YSP YSPTSP P++ + SP SP Y PTSP Y +
Sbjct: 1761 PTSPHYSPTSPHYSPTSPHYSPTSPHYS----PSSPHYSPTSPQYSPTSPNYNPASPNYS 1816
Query: 428 AANVYSPSSPAYSPFSPNYAAAS---------SPAYQPPS 520
+ YSP+SP Y+P SPNY+ +S SP Y P S
Sbjct: 1817 PTSHYSPTSPNYNPTSPNYSPSSPNYISNNSGSPGYSPSS 1856
Score = 79.3 bits (194), Expect = 1e-13
Identities = 59/154 (38%), Positives = 76/154 (49%), Gaps = 10/154 (6%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP +P SP SP Y+ SP + + + Y+P SP Y TSP YS
Sbjct: 1735 SPHYSPT---SPHYSPTSPHYSPTSPHY--------SPTSPHYSPTSPHYSPTSPH--YS 1781
Query: 257 PSTPALAVSSPGYSPG---YSPTSPSVGARG---GPAAGYASPQSPGYVPTSPAYARPGT 418
P++P + SSP YSP YSPTSP+ P + Y SP SP Y PTSP Y+
Sbjct: 1782 PTSPHYSPSSPHYSPTSPQYSPTSPNYNPASPNYSPTSHY-SPTSPNYNPTSPNYSPSSP 1840
Query: 419 VVAAANV----YSPSSPAYSPFSPNYAAASSPAY 508
+ N YSPSSP Y P + + SP+Y
Sbjct: 1841 NYISNNSGSPGYSPSSPQYDPIAVT-SVPRSPSY 1873
Score = 75.9 bits (185), Expect = 2e-12
Identities = 68/196 (34%), Positives = 89/196 (45%), Gaps = 28/196 (14%)
Frame = +2
Query: 17 SFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPG-------YAAMSPRFGGGLG 175
S+ P+ S +G+ +P +MTP RSP MSP SPG Y+ MSP
Sbjct: 1572 SYEPM--SPMISGQFSPVQMTP-RSP-------MSPVSPGGIFSPVPYSPMSP------- 1614
Query: 176 GGPAGGAGAYAPASPAYMATSPGMG-------------------YSPSTPALAVSS-PGY 295
+ Y P SP Y A+SP YSPS+P + +
Sbjct: 1615 ---SSPLMDYTPTSPIYAASSPTYNTEVSERARKKYKVNNTLSSYSPSSPLNSDNKISNI 1671
Query: 296 SPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVAAANV-YSPSSPAYSPF 472
SP SPTSP P + + SP SP Y PTSP Y+ + + YSP+SP YSP
Sbjct: 1672 SPDLSPTSPHYS----PTSPHYSPTSPHYSPTSPHYSPTSPHYSPTSPHYSPTSPHYSPT 1727
Query: 473 SPNYAAASSPAYQPPS 520
SP+Y + +SP Y P S
Sbjct: 1728 SPHY-SPTSPHYSPTS 1742
[170][TOP]
>UniRef100_Q84KP6 DNA-directed RNA polymerase n=1 Tax=Cyanidioschyzon merolae
RepID=Q84KP6_CYAME
Length = 1819
Score = 92.4 bits (228), Expect = 2e-17
Identities = 71/173 (41%), Positives = 90/173 (52%), Gaps = 5/173 (2%)
Frame = +2
Query: 17 SFSPIMSSADAAGRATPGRMTPGRSPAGRF-TPRMSP-ASPGYAAMSPRFGGGLGGGPAG 190
SFSP + + A G AGR+ SP AS +A +P + GG G
Sbjct: 1568 SFSPAVGFSPATSTYVGG---DAMKDAGRYGLGGTSPFASFSASATTPNWAPSPAGGGTG 1624
Query: 191 GAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSPGYSPTSPSVGARGGPAAGYASPQ 370
GA++P+SPAY TSP + SP++PA + +SP YSP TSP+ SP
Sbjct: 1625 TLGAFSPSSPAYSPTSPRL-VSPTSPAYSPTSPAYSP----TSPAY-----------SPT 1668
Query: 371 SPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYA-AASSP--AYQPPS 520
SP Y PTSPAY+ + YSP+SPAYSP SPN A + SSP AY P S
Sbjct: 1669 SPAYSPTSPAYS------PTSPAYSPTSPAYSPSSPNVAYSPSSPNVAYSPSS 1715
Score = 91.7 bits (226), Expect = 3e-17
Identities = 73/190 (38%), Positives = 97/190 (51%), Gaps = 22/190 (11%)
Frame = +2
Query: 17 SFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGG- 193
+FSP S+ A +P ++P +P SP SP Y+ SP + PA
Sbjct: 1628 AFSP---SSPAYSPTSPRLVSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPT---SPAYSP 1681
Query: 194 -AGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSPGYSPTSPSVG-ARGGPAAGYA-- 361
+ AY+P SPAY +SP + YSPS+P +A S + YSP+SP+V + P Y+
Sbjct: 1682 TSPAYSPTSPAYSPSSPNVAYSPSSPNVAYSPSSPNVAYSPSSPNVAYSPSSPNVAYSPS 1741
Query: 362 ------SPQSP--GYVPTSP--AYARPGTVVA----AANVYSPSSP--AYSPFSPNYA-A 490
SP SP Y P+SP AY+ VA + YSPSSP AYSP SPN A +
Sbjct: 1742 SPNVAYSPSSPNVAYSPSSPNVAYSPSSPNVAYSPSSPVAYSPSSPNVAYSPSSPNVAYS 1801
Query: 491 ASSPAYQPPS 520
SSPA+ P S
Sbjct: 1802 PSSPAFSPSS 1811
Score = 85.9 bits (211), Expect = 2e-15
Identities = 61/169 (36%), Positives = 82/169 (48%), Gaps = 14/169 (8%)
Frame = +2
Query: 23 SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGG---LGGGPAGG 193
SP S A T +P +P SP SP Y+ SP + + P+
Sbjct: 1648 SPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPSSPNVAYSPSSP 1707
Query: 194 AGAYAPASP--AYMATSPGMGYSPSTPALAVSSPGYSPGYSPTSPSVG-ARGGPAAGYAS 364
AY+P+SP AY +SP + YSPS+P +A S + YSP+SP+V + P Y S
Sbjct: 1708 NVAYSPSSPNVAYSPSSPNVAYSPSSPNVAYSPSSPNVAYSPSSPNVAYSPSSPNVAY-S 1766
Query: 365 PQSPG--YVPTSPAYARPGTVVAAAN------VYSPSSPAYSPFSPNYA 487
P SP Y P+SP P + A + YSPSSPA+SP SP Y+
Sbjct: 1767 PSSPNVAYSPSSPVAYSPSSPNVAYSPSSPNVAYSPSSPAFSPSSPVYS 1815
Score = 78.2 bits (191), Expect = 3e-13
Identities = 59/163 (36%), Positives = 79/163 (48%), Gaps = 14/163 (8%)
Frame = +2
Query: 23 SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFG-----GGLGGGPA 187
SP S A T +P +P SP SP Y+ SP + P+
Sbjct: 1655 SPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPSSPNVAYSPSSPNVAYSPS 1714
Query: 188 GGAGAYAPASP--AYMATSPGMGYSPSTPALAVSSPGYSPGYSPTSPSVG-ARGGPAAGY 358
AY+P+SP AY +SP + YSPS+P +A S + YSP+SP+V + P Y
Sbjct: 1715 SPNVAYSPSSPNVAYSPSSPNVAYSPSSPNVAYSPSSPNVAYSPSSPNVAYSPSSPNVAY 1774
Query: 359 ASPQSP-GYVPTSP--AYARPGTVVA---AANVYSPSSPAYSP 469
SP SP Y P+SP AY+ VA ++ +SPSSP YSP
Sbjct: 1775 -SPSSPVAYSPSSPNVAYSPSSPNVAYSPSSPAFSPSSPVYSP 1816
[171][TOP]
>UniRef100_UPI00006A20E2 DNA-directed RNA polymerase II subunit RPB1 (EC 2.7.7.6) (RNA
polymerase II subunit B1) (DNA-directed RNA polymerase
II subunit A) (DNA-directed RNA polymerase III largest
subunit). n=1 Tax=Xenopus (Silurana) tropicalis
RepID=UPI00006A20E2
Length = 162
Score = 92.0 bits (227), Expect = 2e-17
Identities = 61/162 (37%), Positives = 81/162 (50%), Gaps = 12/162 (7%)
Frame = +2
Query: 71 RMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMG 250
R TP +P SP+SP Y+ SP++ + +Y+P+SP Y TSP
Sbjct: 2 RYTPQSPSYTPSSPSYSPSSPSYSPTSPKY--------TPTSPSYSPSSPEYTPTSP--K 51
Query: 251 YSPSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTV 421
YSP++P + +SP Y SP YSPT+P + P + SP SP Y PTSP Y+
Sbjct: 52 YSPTSPKYSPTSPKYSPTSPTYSPTTP----KYSPTSPTYSPTSPVYTPTSPKYS----- 102
Query: 422 VAAANVYSPSSPAYSPFSPNYAAAS---------SPAYQPPS 520
+ YSP+SP YSP SP Y+ S SP Y P S
Sbjct: 103 -PTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTS 143
Score = 92.0 bits (227), Expect = 2e-17
Identities = 62/167 (37%), Positives = 81/167 (48%), Gaps = 3/167 (1%)
Frame = +2
Query: 23 SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
SP S + + T + TP +P +P SP Y+ SP+
Sbjct: 14 SPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYSPTSPK--------------- 58
Query: 203 YAPASPAYMATSPGMGYSPSTPALAVSSPGYSPG---YSPTSPSVGARGGPAAGYASPQS 373
Y+P SP Y TSP YSP+TP + +SP YSP Y+PTSP + P + SP S
Sbjct: 59 YSPTSPKYSPTSPT--YSPTTPKYSPTSPTYSPTSPVYTPTSP----KYSPTSPTYSPTS 112
Query: 374 PGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQP 514
P Y PTSP Y+ + YSP+SP YSP SP Y + +SPA P
Sbjct: 113 PKYSPTSPTYS---PTSPKGSTYSPTSPGYSPTSPTY-SLTSPAISP 155
[172][TOP]
>UniRef100_B6QAY2 DNA-directed RNA polymerase n=1 Tax=Penicillium marneffei ATCC 18224
RepID=B6QAY2_PENMQ
Length = 1744
Score = 91.3 bits (225), Expect = 4e-17
Identities = 70/199 (35%), Positives = 97/199 (48%), Gaps = 30/199 (15%)
Frame = +2
Query: 20 FSPIMSSADAAGRATP---GRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGG---- 178
FSP S +P ++PG SP+ + SP+SP + SPRF G
Sbjct: 1555 FSPAPQSPGGYSPTSPFNTSPVSPGYSPSSSY----SPSSPNMSVTSPRFMSTSPGFSPQ 1610
Query: 179 GPAGG--AGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSPG---------------- 304
PA + AY+P SP++ ATSP YSP++P + SSP YSP
Sbjct: 1611 SPAFAITSPAYSPTSPSFQATSPS--YSPTSPRFSPSSPNYSPSSPNFSPASPAFSPSSP 1668
Query: 305 -YSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVV---AAANVY-SPSSPAYSP 469
YSPTSP++G R +SP SP Y P SP ++ + + N++ SP+SPA
Sbjct: 1669 TYSPTSPAIGGR---QFSPSSPSSPKYSPASPGWSPTSPEIYSPTSPNIHGSPTSPARGA 1725
Query: 470 FSPNYAAASSPAYQPPSRR 526
SP+Y + +SP Y P S R
Sbjct: 1726 TSPSY-SPTSPQYNPTSPR 1743
Score = 81.3 bits (199), Expect = 4e-14
Identities = 70/197 (35%), Positives = 88/197 (44%), Gaps = 28/197 (14%)
Frame = +2
Query: 14 ASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPG-YAAMSPRFGGGLGGGPAG 190
A FSPI AG TPG T + G +P SPG Y+ SP
Sbjct: 1527 AKFSPIRQ----AGAETPGGFTAYQPSGGLGGFSPAPQSPGGYSPTSPF----------- 1571
Query: 191 GAGAYAPASPAYMATSPGMGYSPSTPALAVS-------SPGY----------SPGYSPTS 319
+P SP Y SP YSPS+P ++V+ SPG+ SP YSPTS
Sbjct: 1572 ---NTSPVSPGY---SPSSSYSPSSPNMSVTSPRFMSTSPGFSPQSPAFAITSPAYSPTS 1625
Query: 320 PSVGARG---GPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSP---- 478
PS A P + SP SP Y P+SP ++ A+ +SPSSP YSP SP
Sbjct: 1626 PSFQATSPSYSPTSPRFSPSSPNYSPSSPNFS------PASPAFSPSSPTYSPTSPAIGG 1679
Query: 479 ---NYAAASSPAYQPPS 520
+ ++ SSP Y P S
Sbjct: 1680 RQFSPSSPSSPKYSPAS 1696
Score = 76.6 bits (187), Expect = 1e-12
Identities = 55/160 (34%), Positives = 76/160 (47%), Gaps = 3/160 (1%)
Frame = +2
Query: 8 ATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPA 187
A A SP S + +AT +P +P SP+SP ++ SP
Sbjct: 1613 AFAITSPAYSPTSPSFQATSPSYSPTSPRFSPSSPNYSPSSPNFSPASP----------- 1661
Query: 188 GGAGAYAPASPAYMATSPGMG---YSPSTPALAVSSPGYSPGYSPTSPSVGARGGPAAGY 358
A++P+SP Y TSP +G +SPS+P+ SP SPG+SPTSP + + P +
Sbjct: 1662 ----AFSPSSPTYSPTSPAIGGRQFSPSSPSSPKYSPA-SPGWSPTSPEIYSPTSPNI-H 1715
Query: 359 ASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSP 478
SP SP TSP+ YSP+SP Y+P SP
Sbjct: 1716 GSPTSPARGATSPS-------------YSPTSPQYNPTSP 1742
[173][TOP]
>UniRef100_C9SR21 DNA-directed RNA polymerase II subunit RPB1 n=1 Tax=Verticillium
albo-atrum VaMs.102 RepID=C9SR21_9PEZI
Length = 1756
Score = 90.9 bits (224), Expect = 5e-17
Identities = 67/177 (37%), Positives = 84/177 (47%), Gaps = 33/177 (18%)
Frame = +2
Query: 89 SPAGRFTPRMSPASPGYAAMSPRFGG---GLGGGPAGGAGAYAP-----ASP-------- 220
S G F+P + S +GG G GG G AGA +P SP
Sbjct: 1518 SNEGNFSPIVGAGSDDNTGFGTEYGGTYGGFGGASPGRAGATSPFTTSPTSPFSSFAGAG 1577
Query: 221 AYMATSPGMGYSPSTP-----ALAVSSPGYSPG---YSPTSPSVGARGGPAAGYASPQSP 376
Y TSPG GYSP++P A +SP +SP +SPTSP V PA+ SP SP
Sbjct: 1578 GYSPTSPGGGYSPTSPLMDGGARYATSPQFSPSSPSFSPTSP-VHRPTSPASPNYSPTSP 1636
Query: 377 GYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNY---------AAASSPAYQPPS 520
Y PTSP R + + A SP+SP+YSP SP+Y A +SP+Y P S
Sbjct: 1637 SYSPTSPTSPRHYSPTSPAQFNSPTSPSYSPASPSYSPTSPNLHGAGPTSPSYSPAS 1693
Score = 83.6 bits (205), Expect = 8e-15
Identities = 72/204 (35%), Positives = 99/204 (48%), Gaps = 36/204 (17%)
Frame = +2
Query: 17 SFSPIMS--SADAAGRATP--------GRMTPGRSPAGRFTP-RMSPASPGYAAMSPRFG 163
+FSPI+ S D G T G +PGR AG +P SP SP + F
Sbjct: 1522 NFSPIVGAGSDDNTGFGTEYGGTYGGFGGASPGR--AGATSPFTTSPTSPFSS-----FA 1574
Query: 164 GGLGGGPAGGAGAYAPASP-----AYMATSPGMGYSPSTPALAVSSPGY----------- 295
G G P G Y+P SP A ATSP +SPS+P+ + +SP +
Sbjct: 1575 GAGGYSPTSPGGGYSPTSPLMDGGARYATSPQ--FSPSSPSFSPTSPVHRPTSPASPNYS 1632
Query: 296 --SPGYSPTSPSVGARGGPA--AGYASPQSPGYVPTSPAYARPGTVVAAAN----VYSPS 451
SP YSPTSP+ P A + SP SP Y P SP+Y+ + A YSP+
Sbjct: 1633 PTSPSYSPTSPTSPRHYSPTSPAQFNSPTSPSYSPASPSYSPTSPNLHGAGPTSPSYSPA 1692
Query: 452 SPAYSPFSPNYA-AASSPAYQPPS 520
SP++SP SP ++ + +SP++Q P+
Sbjct: 1693 SPSWSPTSPEHSYSPTSPSFQRPA 1716
Score = 83.6 bits (205), Expect = 8e-15
Identities = 66/188 (35%), Positives = 95/188 (50%), Gaps = 24/188 (12%)
Frame = +2
Query: 11 TASFSPIMSSADAAGRA--TPGRMTPGRSP----AGRF--TPRMSPASPGYAAMSPRFGG 166
T+ SP S A A G + +PG SP R+ +P+ SP+SP ++ SP
Sbjct: 1564 TSPTSPFSSFAGAGGYSPTSPGGGYSPTSPLMDGGARYATSPQFSPSSPSFSPTSPVHRP 1623
Query: 167 GLGGGPAGGAGAYAPASPAYMATSPGMG--YSPSTPAL--AVSSPGYSPG---YSPTSPS 325
P Y+P SP+Y TSP YSP++PA + +SP YSP YSPTSP+
Sbjct: 1624 TSPASPN-----YSPTSPSYSPTSPTSPRHYSPTSPAQFNSPTSPSYSPASPSYSPTSPN 1678
Query: 326 VGARGGPAAGYA------SPQSP--GYVPTSPAYARPGTVVAAANV-YSPSSPAYSPFSP 478
+ G + Y+ SP SP Y PTSP++ RP + + YSP+SP++SP +P
Sbjct: 1679 LHGAGPTSPSYSPASPSWSPTSPEHSYSPTSPSFQRPAMQQSPTSPNYSPTSPSFSPRTP 1738
Query: 479 NYAAASSP 502
+ + P
Sbjct: 1739 GPSGSGKP 1746
Score = 68.2 bits (165), Expect = 3e-10
Identities = 46/126 (36%), Positives = 63/126 (50%), Gaps = 6/126 (4%)
Frame = +2
Query: 8 ATASFSPIMSSADAAGRATPGRMTPGRSPA---GRFTPRMSPASPGYAAMSPRFGGGLGG 178
A+ ++SP S +P +P SPA +P SPASP Y+ SP G
Sbjct: 1627 ASPNYSPTSPSYSPTSPTSPRHYSP-TSPAQFNSPTSPSYSPASPSYSPTSPNLHGA--- 1682
Query: 179 GPAGGAGAYAPASPAYMATSPGMGYSPSTPAL---AVSSPGYSPGYSPTSPSVGARGGPA 349
GP + +Y+PASP++ TSP YSP++P+ A+ SP YSPTSPS R
Sbjct: 1683 GPT--SPSYSPASPSWSPTSPEHSYSPTSPSFQRPAMQQSPTSPNYSPTSPSFSPRTPGP 1740
Query: 350 AGYASP 367
+G P
Sbjct: 1741 SGSGKP 1746
[174][TOP]
>UniRef100_B2AA31 DNA-directed RNA polymerase n=1 Tax=Podospora anserina
RepID=B2AA31_PODAN
Length = 1748
Score = 90.9 bits (224), Expect = 5e-17
Identities = 62/165 (37%), Positives = 86/165 (52%), Gaps = 12/165 (7%)
Frame = +2
Query: 62 TPGRMTPG--RSPAGRFTPRMSPASP--GYAAMSPRFGGGLGGGPAGGAGAYAPASPAYM 229
+PGR T SP F+ SP SP GY+ SP G G + ++P+SP++
Sbjct: 1562 SPGRPTSPFTTSPTSPFSYGYSPTSPAAGYSPTSPLIDAG---GRFASSPQFSPSSPSFS 1618
Query: 230 ATSPGMGY-SPSTPALAVSSPGYSPG-------YSPTSPSVGARGGPAAGYASPQSPGYV 385
TSP + SP++P+ + +SP YSP YSPTSP A + SP SP Y
Sbjct: 1619 PTSPMLRPGSPTSPSYSPTSPSYSPASPAATRHYSPTSP---------AQFQSPTSPSYS 1669
Query: 386 PTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
PTSP+Y+ A+ + +SP+YSP SPN++ S AY P S
Sbjct: 1670 PTSPSYS------PASPAFQATSPSYSPASPNWSPTSPDAYSPTS 1708
Score = 89.7 bits (221), Expect = 1e-16
Identities = 61/169 (36%), Positives = 81/169 (47%), Gaps = 28/169 (16%)
Frame = +2
Query: 98 GRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPA--------------YMAT 235
G F+P + S G + +GGG G + A +P P Y T
Sbjct: 1526 GNFSPIVGNESGGPPGFASEYGGGGYGSSSVNPYATSPGRPTSPFTTSPTSPFSYGYSPT 1585
Query: 236 SPGMGYSPSTPALAV-----SSPGYSPG---YSPTSPSVGARGGPAAGYASPQSPGYVPT 391
SP GYSP++P + SSP +SP +SPTSP + G P + SP SP Y P
Sbjct: 1586 SPAAGYSPTSPLIDAGGRFASSPQFSPSSPSFSPTSPMLRP-GSPTSPSYSPTSPSYSPA 1644
Query: 392 SPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAAS------SPAYQPPS 520
SPA R + + A SP+SP+YSP SP+Y+ AS SP+Y P S
Sbjct: 1645 SPAATRHYSPTSPAQFQSPTSPSYSPTSPSYSPASPAFQATSPSYSPAS 1693
Score = 85.9 bits (211), Expect = 2e-15
Identities = 64/173 (36%), Positives = 91/173 (52%), Gaps = 11/173 (6%)
Frame = +2
Query: 11 TASFSPIMSSADAAGRATPGRMTPGRSPAGRF--TPRMSPASPGYAAMSPRFGGGLGGGP 184
T+ FS S A +P +P GRF +P+ SP+SP ++ SP G P
Sbjct: 1575 TSPFSYGYSPTSPAAGYSP--TSPLIDAGGRFASSPQFSPSSPSFSPTSPMLRPGSPTSP 1632
Query: 185 AGG--AGAYAPASPA----YMATSPGMGYSPSTPALAVSSPGYSPGYSPTSPSVGARGGP 346
+ + +Y+PASPA Y TSP SP++P+ + +SP YSP SP + P
Sbjct: 1633 SYSPTSPSYSPASPAATRHYSPTSPAQFQSPTSPSYSPTSPSYSPA-SPAFQATSPSYSP 1691
Query: 347 AAGYASPQSP-GYVPTSPAYAR-PGTVVAAANV-YSPSSPAYSPFSPNYAAAS 496
A+ SP SP Y PTSP + R PG ++ + YSP+SP++SP +P AA S
Sbjct: 1692 ASPNWSPTSPDAYSPTSPTFQRSPGQQMSPTSPGYSPTSPSFSPRTPGRAAGS 1744
Score = 53.9 bits (128), Expect = 7e-06
Identities = 47/130 (36%), Positives = 60/130 (46%), Gaps = 12/130 (9%)
Frame = +2
Query: 17 SFSPIMSSADAAGRATPGRMTPGRSPA---GRFTPRMSPASPGYAAMSPRFGGGLGGGPA 187
S+SP S A A +P SPA +P SP SP Y+ SP F
Sbjct: 1633 SYSPTSPSYSPASPAATRHYSP-TSPAQFQSPTSPSYSPTSPSYSPASPAF--------Q 1683
Query: 188 GGAGAYAPASPAYMATSPGMGYSPSTPA--------LAVSSPGYSPGYSPTSPSVGAR-G 340
+ +Y+PASP + TSP YSP++P ++ +SP GYSPTSPS R
Sbjct: 1684 ATSPSYSPASPNWSPTSPD-AYSPTSPTFQRSPGQQMSPTSP----GYSPTSPSFSPRTP 1738
Query: 341 GPAAGYASPQ 370
G AAG Q
Sbjct: 1739 GRAAGSGGDQ 1748
[175][TOP]
>UniRef100_Q7SDN0 DNA-directed RNA polymerase n=1 Tax=Neurospora crassa
RepID=Q7SDN0_NEUCR
Length = 1752
Score = 90.5 bits (223), Expect = 6e-17
Identities = 66/175 (37%), Positives = 95/175 (54%), Gaps = 18/175 (10%)
Frame = +2
Query: 8 ATASFSPIMSSADAAGRATPGRMTPGRSP-------AGRF--TPRMSPASPGYAAMSPRF 160
AT+ F+P +S + G +P G SP AGRF +P+ SP+SP ++ SP
Sbjct: 1570 ATSPFTP--TSPFSYGGYSPSSPAAGYSPSSPLLDSAGRFASSPQFSPSSPSFSPTSPML 1627
Query: 161 GGGLGGGPAGG--AGAYAPASPA---YMATSPGMGYSPSTPALAVSSPGYSPGYSPTSPS 325
G P+ + +Y+PASPA Y TSP +SP++P+ + +SP YSP SP +
Sbjct: 1628 RPGSPTSPSYSPTSPSYSPASPAAARYSPTSPAQQFSPTSPSYSPTSPSYSPA-SPAFQA 1686
Query: 326 VGARGGPAAGYASPQSP-GYVPTSPAYAR-PGTVVAAANV--YSPSSPAYSPFSP 478
PA+ SP SP Y PTSP++ R PG ++ + YSP+SP YSP +P
Sbjct: 1687 TSPSYSPASPTWSPTSPDAYSPTSPSFQRSPGQQLSPTSPTGYSPTSPQYSPRTP 1741
Score = 88.6 bits (218), Expect = 2e-16
Identities = 74/195 (37%), Positives = 93/195 (47%), Gaps = 39/195 (20%)
Frame = +2
Query: 53 GRATP---GRMTPGRSPAGRFTPRMSPASP--GYAAMSPR---FG---GGLGGGPAG--- 190
G ATP G G ++P M SP G + SP FG GG+GG +G
Sbjct: 1503 GAATPYDTGSPMADSGFLGSYSPTMGNFSPIQGAGSDSPTNNGFGTDYGGVGGYGSGTSY 1562
Query: 191 -------GAGAYAPASP----AYMATSPGMGYSPSTPALA-----VSSPGYSPG---YSP 313
+ P SP Y +SP GYSPS+P L SSP +SP +SP
Sbjct: 1563 SSATSPRATSPFTPTSPFSYGGYSPSSPAAGYSPSSPLLDSAGRFASSPQFSPSSPSFSP 1622
Query: 314 TSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAA 493
TSP + G P + SP SP Y P SPA AR + A +SP+SP+YSP SP+Y+ A
Sbjct: 1623 TSPMLRP-GSPTSPSYSPTSPSYSPASPAAARYSPT-SPAQQFSPTSPSYSPTSPSYSPA 1680
Query: 494 S------SPAYQPPS 520
S SP+Y P S
Sbjct: 1681 SPAFQATSPSYSPAS 1695
[176][TOP]
>UniRef100_UPI000179348F PREDICTED: similar to DNA-directed RNA polymerase II subunit RPB1
(RNA polymerase II subunit B1) (DNA-directed RNA
polymerase III largest subunit) n=1 Tax=Acyrthosiphon
pisum RepID=UPI000179348F
Length = 1862
Score = 89.4 bits (220), Expect = 1e-16
Identities = 64/185 (34%), Positives = 92/185 (49%), Gaps = 16/185 (8%)
Frame = +2
Query: 14 ASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGG 193
+S SP + + + +P + + +P SP SP Y+ SP + +
Sbjct: 1622 SSMSPNYNYSPTSPSYSPTSPSYSHTSYSPTSPSYSPTSPSYSPTSPSY--------SPT 1673
Query: 194 AGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYAS 364
+ +Y+P SP+Y TSP YSP++P+ + +SP YSP YSPTSPS P + S
Sbjct: 1674 SPSYSPTSPSYSPTSPS--YSPTSPSYSPTSPSYSPTSPSYSPTSPSYS----PTSPSYS 1727
Query: 365 PQSPGYVPTSPAYA------RPGTVVAAANV-YSPSSPA------YSPFSPNYAAASSPA 505
P SP Y P+SP YA P +N YSP+SP+ YSP SP Y + S+ +
Sbjct: 1728 PTSPSYSPSSPQYAASSPSYTPSATSGTSNYKYSPTSPSLAVSPTYSPTSPMY-SPSNAS 1786
Query: 506 YQPPS 520
Y P S
Sbjct: 1787 YSPSS 1791
Score = 86.3 bits (212), Expect = 1e-15
Identities = 67/189 (35%), Positives = 89/189 (47%), Gaps = 19/189 (10%)
Frame = +2
Query: 11 TASFSPIMSSADAAGRATP-------GRMTPGRSPAGRFTPRMSPASPGYAAMSPRF--- 160
T S SP M+ D +TP + G +P G P SPA A+ + F
Sbjct: 1501 TPSMSPAMTPWDQT--STPMYQNNWSSSLETGMTPGG---PGFSPAGSSEASGTSPFWMS 1555
Query: 161 GGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP-GYSPTSPSVGAR 337
GG G P A +P P+ + SP Y PS+P SP +P YSPTSP A
Sbjct: 1556 SGGTPGSPGSPGMATSPYVPSPSSMSPNYNY-PSSPQFGSLSPSMTPTNYSPTSPQYSAT 1614
Query: 338 GGPAAGYA--------SPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAA 493
Y+ SP SP Y PTSP+Y+ + + YSP+SP+YSP SP+Y +
Sbjct: 1615 QQNTPKYSSMSPNYNYSPTSPSYSPTSPSYSHTSYSPTSPS-YSPTSPSYSPTSPSY-SP 1672
Query: 494 SSPAYQPPS 520
+SP+Y P S
Sbjct: 1673 TSPSYSPTS 1681
Score = 83.2 bits (204), Expect = 1e-14
Identities = 60/172 (34%), Positives = 80/172 (46%), Gaps = 24/172 (13%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP +P SP SP Y+ SP + + + +Y+P SP+Y TSP YS
Sbjct: 1688 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 1734
Query: 257 PSTPALAVSSPGYSPG---------YSPTSPS--VGARGGPAAGYASPQSPGYVPTSPAY 403
PS+P A SSP Y+P YSPTSPS V P + SP + Y P+S +
Sbjct: 1735 PSSPQYAASSPSYTPSATSGTSNYKYSPTSPSLAVSPTYSPTSPMYSPSNASYSPSSLQH 1794
Query: 404 A------------RPGTVVAAANVYSPSSPAYSPFSPNYA-AASSPAYQPPS 520
P + V + +S +SP YSP SP Y+ SP Y P S
Sbjct: 1795 TPNAGGTQYNQSYSPSSPVYSPTNFSMASPRYSPTSPTYSPGVGSPHYSPSS 1846
Score = 60.1 bits (144), Expect = 9e-08
Identities = 52/144 (36%), Positives = 65/144 (45%), Gaps = 32/144 (22%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPA------YMATS 238
+P SP +P SP+SP YAA SP + G + Y+P SP+ Y TS
Sbjct: 1723 SPSYSPT---SPSYSPSSPQYAASSPSYTPSATSGTSNYK--YSPTSPSLAVSPTYSPTS 1777
Query: 239 P-----GMGYSPS----TP---------ALAVSSPGYSPG--------YSPTSPSVGARG 340
P YSPS TP + + SSP YSP YSPTSP+
Sbjct: 1778 PMYSPSNASYSPSSLQHTPNAGGTQYNQSYSPSSPVYSPTNFSMASPRYSPTSPTYSP-- 1835
Query: 341 GPAAGYASPQSPGYVPTSPAYARP 412
G + + SP SP Y PTSP Y+ P
Sbjct: 1836 GVGSPHYSPSSPSYSPTSPNYSGP 1859
[177][TOP]
>UniRef100_Q9AXN1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Botryocladia
uvarioides RepID=Q9AXN1_9FLOR
Length = 1712
Score = 89.0 bits (219), Expect = 2e-16
Identities = 71/197 (36%), Positives = 90/197 (45%), Gaps = 30/197 (15%)
Frame = +2
Query: 14 ASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSP---------ASPGYA---AMSPR 157
ASFSP ++ G+ TP +SP G + P MSP ASPG A A SP
Sbjct: 1499 ASFSPSPATPGNFGQ-NANAYTPLQSPRGDYMPPMSPGGAASPYVSASPGRASPYATSPA 1557
Query: 158 FGGGLGGGPAGGAGAYAPASPAYMATSPGMG----------------YSPSTPALAVSSP 289
+ G AG +APASPAY TSP G YSP++PA +SP
Sbjct: 1558 YPQSPGSYNAGSG--FAPASPAYKVTSPAPGGYGGAYQSPARSPGAQYSPTSPAFTPTSP 1615
Query: 290 GYSPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSP 469
GYS P P GA Y + SPGY S PG + + YSP+SP ++P
Sbjct: 1616 GYSSATGPGRPGTGAYSPTGPSYNAAASPGY--QSGINYSPG----SPHTYSPNSPVFTP 1669
Query: 470 FSP--NYAAASSPAYQP 514
SP + + S+P Y P
Sbjct: 1670 RSPAAHGYSPSTPQYNP 1686
Score = 79.7 bits (195), Expect = 1e-13
Identities = 68/184 (36%), Positives = 85/184 (46%), Gaps = 31/184 (16%)
Frame = +2
Query: 20 FSPIMSSADAAG---RATPGRMTP-GRSPAGRFTPR-------MSPASPGYAAMSPRFGG 166
+ P MS AA A+PGR +P SPA +P +PASP Y SP GG
Sbjct: 1528 YMPPMSPGGAASPYVSASPGRASPYATSPAYPQSPGSYNAGSGFAPASPAYKVTSPAPGG 1587
Query: 167 --GLGGGPAGGAGA-YAPASPAYMATSPGMG------------YSPSTPAL-AVSSPGYS 298
G PA GA Y+P SPA+ TSPG YSP+ P+ A +SPGY
Sbjct: 1588 YGGAYQSPARSPGAQYSPTSPAFTPTSPGYSSATGPGRPGTGAYSPTGPSYNAAASPGYQ 1647
Query: 299 PG--YSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPS--SPAYS 466
G YSP SP + P SP + GY P++P Y G+ N SP+ + S
Sbjct: 1648 SGINYSPGSPHTYSPNSPVFTPRSPAAHGYSPSTPQYNPQGSNPYGQNAGSPAPGNANQS 1707
Query: 467 PFSP 478
P SP
Sbjct: 1708 PASP 1711
[178][TOP]
>UniRef100_Q9C428 DNA-directed RNA polymerase (Fragment) n=1 Tax=Monoblepharis
macrandra RepID=Q9C428_9FUNG
Length = 1603
Score = 87.0 bits (214), Expect = 7e-16
Identities = 68/170 (40%), Positives = 84/170 (49%), Gaps = 14/170 (8%)
Frame = +2
Query: 20 FSPI-MSSADAAGRATPGRMTPGRSPAG---RFTPRM-------SPASPGYAAMSPRFGG 166
FSPI + S GR TPG M+ G+SP R PR+ SP+SP Y+ FG
Sbjct: 1460 FSPIGVDSGRDTGRWTPG-MSGGQSPYASTHRCDPRLMNKRSLRSPSSPVYSMWLASFGL 1518
Query: 167 GLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGAR 337
G +P SP Y TSP YSP++P+ +SP YSP YSPTSPS
Sbjct: 1519 LQPFLIVRCFGVISPTSPGYSPTSPS--YSPTSPSYTPTSPSYSPTSPSYSPTSPSY--- 1573
Query: 338 GGPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYA 487
SP SP Y PTSP+Y SP+SP+YSP SP+Y+
Sbjct: 1574 --------SPTSPSYSPTSPSY-------------SPTSPSYSPTSPSYS 1602
[179][TOP]
>UniRef100_O96452 DNA-directed RNA polymerase n=1 Tax=Antonospora locustae
RepID=O96452_ANTLO
Length = 1553
Score = 87.0 bits (214), Expect = 7e-16
Identities = 70/179 (39%), Positives = 90/179 (50%), Gaps = 7/179 (3%)
Frame = +2
Query: 8 ATASFSPIMSSADAAGR-ATPGRMTPGRSPA-GRFTPRMSP-ASPGYAAMSPRFGGGLGG 178
A S P+ S D G ATP +P G + SP A+ GYAA G
Sbjct: 1384 ALRSVIPVAKSFDFLGEVATPVIRSPVSDVRYGSSSVPFSPIAAHGYAA---------GT 1434
Query: 179 GPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPSVGARGGPA 349
P+ Y+P SPAY SP++PA + +SP Y SP YSPTSP+ P
Sbjct: 1435 TPS----VYSPTSPAY---------SPTSPAYSPTSPAYSPTSPAYSPTSPAY----SPT 1477
Query: 350 AGYASPQSPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQPPSR 523
+ SP SP Y PTSPAY+ + + YSP+SPAYSP SP Y + +SP Y+P +R
Sbjct: 1478 SPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAY-SPTSPVYRPSTR 1535
Score = 60.8 bits (146), Expect = 5e-08
Identities = 43/122 (35%), Positives = 58/122 (47%), Gaps = 11/122 (9%)
Frame = +2
Query: 5 NATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGG-- 178
+++ FSPI + AAG TP +P +P SP SP Y+ SP +
Sbjct: 1417 SSSVPFSPIAAHGYAAG-TTPSVYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYS 1475
Query: 179 --GPAGG--AGAYAPASPAYMATSPGMG-----YSPSTPALAVSSPGYSPGYSPTSPSVG 331
PA + AY+P SPAY TSP YSP++PA + +SP YSP PS
Sbjct: 1476 PTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPVYRPSTR 1535
Query: 332 AR 337
A+
Sbjct: 1536 AK 1537
[180][TOP]
>UniRef100_B0DB45 DNA-directed RNA polymerase n=1 Tax=Laccaria bicolor S238N-H82
RepID=B0DB45_LACBS
Length = 1742
Score = 86.3 bits (212), Expect = 1e-15
Identities = 72/179 (40%), Positives = 88/179 (49%), Gaps = 22/179 (12%)
Frame = +2
Query: 8 ATASFSPIMSSA--DAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPR-------- 157
A+ASFSP+ S+ DAA G G+SP G MSP PGY+ SP
Sbjct: 1511 ASASFSPLASNGGEDAANFQYLGF---GQSPLG--AGGMSPGGPGYSPSSPNVYSPTSPS 1565
Query: 158 ------FGGG---LGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY---SP 301
FGG G P + Y P+ A TSP YSP++PAL ++SPGY SP
Sbjct: 1566 FVPQSPFGGATSPFGTSPYAASPYYDPS--ARNPTSPT--YSPTSPALNLTSPGYSPTSP 1621
Query: 302 GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSP 478
YSPTSPS P + SPQSP + PTSP YSP+SP++SP SP
Sbjct: 1622 RYSPTSPSF----SPTSPRYSPQSPSFSPTSPR-------------YSPTSPSFSPASP 1663
Score = 72.8 bits (177), Expect = 1e-11
Identities = 64/180 (35%), Positives = 87/180 (48%), Gaps = 17/180 (9%)
Frame = +2
Query: 32 MSSADAAGRATPGR--MTPGRSPAGRFTPRMSPASPGYAAMSPRFGGG---------LGG 178
M +A G TPG+ MTP + + + + P A+ SP G LG
Sbjct: 1475 MLAAQIDGGMTPGQVAMTPYDTNSPVWHDNLFKGDPASASFSPLASNGGEDAANFQYLGF 1534
Query: 179 GPAG-GAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSPGYSP--TSP-SVGARGGP 346
G + GAG +P P Y +SP + YSP++P+ SP + SP TSP + P
Sbjct: 1535 GQSPLGAGGMSPGGPGYSPSSPNV-YSPTSPSFVPQSP-FGGATSPFGTSPYAASPYYDP 1592
Query: 347 AAGYASPQSPGYVPTSPAY--ARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
+A +P SP Y PTSPA PG YSP+SP YSP SP++ + +SP Y P S
Sbjct: 1593 SA--RNPTSPTYSPTSPALNLTSPG--------YSPTSPRYSPTSPSF-SPTSPRYSPQS 1641
[181][TOP]
>UniRef100_C7YI77 Predicted protein n=1 Tax=Nectria haematococca mpVI 77-13-4
RepID=C7YI77_NECH7
Length = 1750
Score = 84.3 bits (207), Expect = 5e-15
Identities = 60/154 (38%), Positives = 80/154 (51%), Gaps = 11/154 (7%)
Frame = +2
Query: 89 SPAGRFTPR--MSPASPG-YAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMG-YS 256
SP F P SP SP Y+ SP GG+GG A +++P+SP++ TSP + S
Sbjct: 1563 SPTSPFGPGGGYSPTSPNAYSPTSPLVDGGMGGRYATSP-SFSPSSPSFSPTSPMVRPTS 1621
Query: 257 PSTPALAVSSPGYSPG-------YSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPG 415
P++P + SSP YSP YSPTSP+ P + SP SP Y P SP G
Sbjct: 1622 PASPNYSPSSPNYSPASPSSPRHYSPTSPA--QFNSPTSPNYSPASPNYSPASPNLHAGG 1679
Query: 416 TVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPP 517
T + YSP+SP +SP SP + +SP + P
Sbjct: 1680 TTSPS---YSPASPTWSPTSPEAYSPTSPYQRSP 1710
Score = 82.4 bits (202), Expect = 2e-14
Identities = 71/183 (38%), Positives = 87/183 (47%), Gaps = 22/183 (12%)
Frame = +2
Query: 38 SADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSP-RFGGGLGG------GPAGGA 196
S+ AAG +P + +PAG G AMSP GG P G
Sbjct: 1514 SSPAAGNFSPIQGAGSDTPAGFGNTEYGFG--GSTAMSPYAMRGGTSPFTTSPTSPFGPG 1571
Query: 197 GAYAPASP-AYMATSP----GMGYSPST-PALAVSSPGYSPGYSPTSPSVGARGGPAAGY 358
G Y+P SP AY TSP GMG +T P+ + SSP +SP TSP V PA+
Sbjct: 1572 GGYSPTSPNAYSPTSPLVDGGMGGRYATSPSFSPSSPSFSP----TSPMVRPTS-PASPN 1626
Query: 359 ASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAAS---------SPAYQ 511
SP SP Y P SP+ R + + A SP+SP YSP SPNY+ AS SP+Y
Sbjct: 1627 YSPSSPNYSPASPSSPRHYSPTSPAQFNSPTSPNYSPASPNYSPASPNLHAGGTTSPSYS 1686
Query: 512 PPS 520
P S
Sbjct: 1687 PAS 1689
Score = 74.3 bits (181), Expect = 5e-12
Identities = 59/163 (36%), Positives = 79/163 (48%), Gaps = 22/163 (13%)
Frame = +2
Query: 98 GRF--TPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMG--YSPST 265
GR+ +P SP+SP ++ SP P Y+P+SP Y SP YSP++
Sbjct: 1595 GRYATSPSFSPSSPSFSPTSPMVRPTSPASPN-----YSPSSPNYSPASPSSPRHYSPTS 1649
Query: 266 PAL--AVSSPGYSPG---YSPTSPSVGARGGPAAGYA------SPQSP-GYVPTSPAYAR 409
PA + +SP YSP YSP SP++ A G + Y+ SP SP Y PTSP
Sbjct: 1650 PAQFNSPTSPNYSPASPNYSPASPNLHAGGTTSPSYSPASPTWSPTSPEAYSPTSPYQRS 1709
Query: 410 PGTVVAAANVYSPSSPAYSPFSPNYA------AASSPAYQPPS 520
PG SP+SP+YSP SP ++ +S Y P S
Sbjct: 1710 PGAQ------QSPTSPSYSPTSPAFSPRTPGPGSSGNQYSPNS 1746
Score = 73.2 bits (178), Expect = 1e-11
Identities = 59/175 (33%), Positives = 76/175 (43%), Gaps = 23/175 (13%)
Frame = +2
Query: 5 NATASFSPIMSSADAAGRATPGRMTPGR---SPAGRFTPRMSPASPGYAAMSPRFGGGLG 175
NA + SP++ AT +P SP SPASP Y+ SP +
Sbjct: 1580 NAYSPTSPLVDGGMGGRYATSPSFSPSSPSFSPTSPMVRPTSPASPNYSPSSPNYSPASP 1639
Query: 176 GGP-----AGGAGAYAPASPAYMATSPGMGYSPSTPAL---AVSSPGYSPG--------- 304
P A +P SP Y SP YSP++P L +SP YSP
Sbjct: 1640 SSPRHYSPTSPAQFNSPTSPNYSPASPN--YSPASPNLHAGGTTSPSYSPASPTWSPTSP 1697
Query: 305 --YSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYA-RPGTVVAAANVYSPSSPA 460
YSPTSP + G SP SP Y PTSPA++ R ++ N YSP+SP+
Sbjct: 1698 EAYSPTSPYQRSPG----AQQSPTSPSYSPTSPAFSPRTPGPGSSGNQYSPNSPS 1748
[182][TOP]
>UniRef100_A4RMP1 DNA-directed RNA polymerase n=1 Tax=Magnaporthe grisea
RepID=A4RMP1_MAGGR
Length = 1757
Score = 84.0 bits (206), Expect = 6e-15
Identities = 70/197 (35%), Positives = 93/197 (47%), Gaps = 27/197 (13%)
Frame = +2
Query: 11 TASFSPIMSSADAAGRATPGRMTP--GRSPA---------GRFTPRMSPASPGYAAMSPR 157
T+ FS +S +AG + +P G SP G +P SP+SP + SP
Sbjct: 1563 TSPFSTSPTSPFSAGYGSYSPTSPMAGYSPTSPMMDGGRYGASSPSFSPSSPSFQPTSPI 1622
Query: 158 FGGGLGGGPAGGAGAYAPASPAYMATSPGMG---YSPSTPALAVSSPGYSPGYSPTSPSV 328
G AG + Y+P SP Y SP G YSP++PA +SP SP YSP SPS
Sbjct: 1623 MRHG-----AGDSMGYSPTSPTYQPGSPTGGDNHYSPTSPAQFGASPT-SPLYSPASPSF 1676
Query: 329 GARGGPAAGY-------ASPQSPG--YVPTSPAYARPGTVVAAANV--YSPSSPAYSPFS 475
G + Y ASP SP Y PTSP++ R + + YSP+SP++SP S
Sbjct: 1677 SPGGATSPMYYVGSPQHASPTSPNAHYSPTSPSFQRSPAQASPTSPGPYSPTSPSFSPRS 1736
Query: 476 P--NYAAASSPAYQPPS 520
P N + +Y P S
Sbjct: 1737 PGRNNRSGGQDSYSPTS 1753
Score = 80.5 bits (197), Expect = 7e-14
Identities = 65/184 (35%), Positives = 85/184 (46%), Gaps = 20/184 (10%)
Frame = +2
Query: 23 SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGG--GPAGGA 196
SP+ S G A+P G F+P MS S + +GGG G P G
Sbjct: 1506 SPMGDSGYNLGMASP--------TMGNFSPIMSGGSDTPTGFATEYGGGSLGSMNPYGSG 1557
Query: 197 GAYAPASP--------------AYMATSPGMGYSPSTPALAVSSPG-YSPGYSPTSPSVG 331
+ P SP +Y TSP GYSP++P + G SP +SP+SPS
Sbjct: 1558 TSPRPTSPFSTSPTSPFSAGYGSYSPTSPMAGYSPTSPMMDGGRYGASSPSFSPSSPSFQ 1617
Query: 332 ARGGPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAY---SPFSPNYAAASSP 502
P + + S GY PTSP Y +PG+ N YSP+SPA SP SP Y+ A SP
Sbjct: 1618 PT-SPIMRHGAGDSMGYSPTSPTY-QPGSPTGGDNHYSPTSPAQFGASPTSPLYSPA-SP 1674
Query: 503 AYQP 514
++ P
Sbjct: 1675 SFSP 1678
Score = 74.7 bits (182), Expect = 4e-12
Identities = 69/202 (34%), Positives = 92/202 (45%), Gaps = 37/202 (18%)
Frame = +2
Query: 17 SFSPIMSS--------ADAAGRATPGRMTP---GRSPAGRFTPRMSPASP---------- 133
+FSPIMS A G + G M P G SP SP SP
Sbjct: 1524 NFSPIMSGGSDTPTGFATEYGGGSLGSMNPYGSGTSPRPTSPFSTSPTSPFSAGYGSYSP 1583
Query: 134 -----GYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSP--------GMGYSPSTPAL 274
GY+ SP GG G + +++P+SP++ TSP MGYSP++P
Sbjct: 1584 TSPMAGYSPTSPMMDGGRYGA---SSPSFSPSSPSFQPTSPIMRHGAGDSMGYSPTSPTY 1640
Query: 275 AVSSP-GYSPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPS 451
SP G YSPTSP A ASP SP Y P SP+++ G A + +Y
Sbjct: 1641 QPGSPTGGDNHYSPTSP--------AQFGASPTSPLYSPASPSFSPGG---ATSPMYYVG 1689
Query: 452 SPAY-SPFSPN-YAAASSPAYQ 511
SP + SP SPN + + +SP++Q
Sbjct: 1690 SPQHASPTSPNAHYSPTSPSFQ 1711
[183][TOP]
>UniRef100_Q4UCP5 DNA-directed RNA polymerase n=1 Tax=Theileria annulata
RepID=Q4UCP5_THEAN
Length = 1678
Score = 83.6 bits (205), Expect = 8e-15
Identities = 69/189 (36%), Positives = 85/189 (44%), Gaps = 38/189 (20%)
Frame = +2
Query: 62 TPGRMTPGRSPAGRFTPR----MSPA--SPGYAAMSPRFGGGLGGGPAGGA--------- 196
T G ++P SP TP MSP SP Y ++ GG+G GP+
Sbjct: 1478 TLGLVSPDSSPLSPSTPATKQTMSPMAFSPTYTSLMMSPVGGIGMGPSTPGLMVDTYALG 1537
Query: 197 GAYAPASPA--YMATSPGMGYSPSTPALAVSSPGYSPGYSPTSPSVGARGGPAAGYASP- 367
G+++P SP TSP SP +P A+S P YSP YSPTSP A SP
Sbjct: 1538 GSFSPTSPTSPMSPTSPMSPTSPMSPTSAIS-PVYSPAYSPTSPMSPTSPTSALSPTSPV 1596
Query: 368 QSPGYVPTSPAYARPGTVVAAANVYSPSSP-------------AYSPFSPNYA------- 487
SP Y PTSP A T + YSP+SP AYSP +PNY
Sbjct: 1597 YSPAYSPTSPTSAMSPTSPVYSPAYSPTSPNLGYAPTSPVYSPAYSPTTPNYGYSPTSPL 1656
Query: 488 AASSPAYQP 514
+ +SPAY P
Sbjct: 1657 SPTSPAYSP 1665
Score = 76.3 bits (186), Expect = 1e-12
Identities = 59/150 (39%), Positives = 72/150 (48%), Gaps = 7/150 (4%)
Frame = +2
Query: 53 GRATPGRMTPGRSPAGRFTPR--MSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAY 226
G +P T SP +P MSP S SP + P A +P SP Y
Sbjct: 1538 GSFSPTSPTSPMSPTSPMSPTSPMSPTSAISPVYSPAYSPTSPMSPTSPTSALSPTSPVY 1597
Query: 227 MATSPGMGYSPSTPALAVS--SPGYSPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPA 400
SP YSP++P A+S SP YSP YSPTSP++G A + SP Y PT+P
Sbjct: 1598 ---SPA--YSPTSPTSAMSPTSPVYSPAYSPTSPNLG-----YAPTSPVYSPAYSPTTPN 1647
Query: 401 YARPGTVVAAANVYSPSSPAYS---PFSPN 481
Y T + SP+SPAYS PFSPN
Sbjct: 1648 YGYSPT-----SPLSPTSPAYSPTDPFSPN 1672
Score = 66.6 bits (161), Expect = 1e-09
Identities = 52/145 (35%), Positives = 64/145 (44%), Gaps = 11/145 (7%)
Frame = +2
Query: 11 TASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAM--SPRFGGGLGGGP 184
T+ SP + + + ++P SPA T MSP SP A SP + P
Sbjct: 1546 TSPMSPTSPMSPTSPMSPTSAISPVYSPAYSPTSPMSPTSPTSALSPTSPVYSPAYS--P 1603
Query: 185 AGGAGAYAPASP----AYMATSPGMGYSPSTPALAVSSPGYSP-----GYSPTSPSVGAR 337
A +P SP AY TSP +GY+P++P V SP YSP GYSPTSP
Sbjct: 1604 TSPTSAMSPTSPVYSPAYSPTSPNLGYAPTSP---VYSPAYSPTTPNYGYSPTSP----- 1655
Query: 338 GGPAAGYASPQSPGYVPTSPAYARP 412
SP SP Y PT P P
Sbjct: 1656 -------LSPTSPAYSPTDPFSPNP 1673
[184][TOP]
>UniRef100_Q2HDK0 DNA-directed RNA polymerase n=1 Tax=Chaetomium globosum
RepID=Q2HDK0_CHAGB
Length = 1756
Score = 83.2 bits (204), Expect = 1e-14
Identities = 70/194 (36%), Positives = 89/194 (45%), Gaps = 38/194 (19%)
Frame = +2
Query: 53 GRATP---GRMTPGRSPAGRFTPRMSPASP--GYAAMSPR-----FGGGLGGGP------ 184
G ATP G G ++P M SP G + SP +GGG G
Sbjct: 1500 GAATPYDTGSPMADNGHLGSYSPTMGNFSPIQGAGSDSPNGFGTEYGGGFGSSTVNPYAT 1559
Query: 185 ---AGGAGAYAPASP-----AYMATSPGMGYSPSTPALAV-----SSPGYSPG---YSPT 316
A + +P SP Y TSP GYSP++P L SSP +SP +SPT
Sbjct: 1560 SPRATSPFSTSPTSPFSYGGGYSPTSPA-GYSPTSPLLDAGGRYASSPQFSPSSPSFSPT 1618
Query: 317 SPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAAS 496
SP + G P + SP SP Y P SPA R + + SP+SP+YSP SP+Y+ AS
Sbjct: 1619 SPMLRP-GSPTSPNYSPTSPSYSPASPAATRHYSPTSPQQFNSPTSPSYSPTSPSYSPAS 1677
Query: 497 ------SPAYQPPS 520
SP+Y P S
Sbjct: 1678 PNLHATSPSYSPAS 1691
Score = 76.3 bits (186), Expect = 1e-12
Identities = 61/183 (33%), Positives = 83/183 (45%), Gaps = 14/183 (7%)
Frame = +2
Query: 14 ASFSPIMSSADAAGRATPGRM----TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGG 181
A +SP DA GR +P SP SP SP Y+ SP +
Sbjct: 1587 AGYSPTSPLLDAGGRYASSPQFSPSSPSFSPTSPMLRPGSPTSPNYSPTSPSYS------ 1640
Query: 182 PAGGAGA--YAPASPAYMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPSVGARGGP 346
PA A Y+P SP + YSP++P+ + +SP SP YSP SP+
Sbjct: 1641 PASPAATRHYSPTSPQQFNSPTSPSYSPTSPSYSPASPNLHATSPSYSPASPT------- 1693
Query: 347 AAGYASPQSP-GYVPTSPAYAR-PGTVVAAANV-YSPSSPAYSPFSPNY--AAASSPAYQ 511
SP SP Y PTSP++ R PG ++ + YSP+SP++SP +P + S Y
Sbjct: 1694 ----WSPTSPDAYSPTSPSFHRSPGQQMSPTSPGYSPTSPSFSPRTPGRGPSGGSGDQYS 1749
Query: 512 PPS 520
P S
Sbjct: 1750 PTS 1752
[185][TOP]
>UniRef100_UPI00016E658E UPI00016E658E related cluster n=1 Tax=Takifugu rubripes
RepID=UPI00016E658E
Length = 1628
Score = 82.8 bits (203), Expect = 1e-14
Identities = 63/162 (38%), Positives = 81/162 (50%), Gaps = 8/162 (4%)
Frame = +2
Query: 26 PIMSSADAAGRATPGRMTP--GRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAG 199
P +S A + G +P G SPA TP + A+P Y A SP G G+ G AG
Sbjct: 1489 PGISVAGSTGMFFGSAPSPMSGMSPA--MTPWNTGATPAYGAWSPSVGSGMTPGAAG--- 1543
Query: 200 AYAPASPAYMATSPGMGYSPSTPALAVSSPGYSPGYSPTSPSVGARGGPAAGY----ASP 367
++P+ A S G+ SPGYSP +SPT S G+ GPA+ Y
Sbjct: 1544 -FSPS-----AASDASGF----------SPGYSPAWSPTPGSPGS-PGPASPYIPSPGGA 1586
Query: 368 QSPGYVPTSPAY--ARPGTVVAAANVYSPSSPAYSPFSPNYA 487
SP Y PTSPAY PG + YSP+SP+YSP SP+Y+
Sbjct: 1587 MSPNYSPTSPAYEPRSPGGYTPQSPGYSPTSPSYSPTSPSYS 1628
[186][TOP]
>UniRef100_Q4N0F9 DNA-directed RNA polymerase n=1 Tax=Theileria parva
RepID=Q4N0F9_THEPA
Length = 1681
Score = 82.8 bits (203), Expect = 1e-14
Identities = 70/191 (36%), Positives = 84/191 (43%), Gaps = 40/191 (20%)
Frame = +2
Query: 62 TPGRMTPGRSPAGRFTPR----MSPA--SPGYAAMSPRFGGGLGGGPAGGA--------- 196
T G ++P SP TP MSP SP Y ++ GG+G GP+
Sbjct: 1478 TLGLVSPDSSPLSPSTPATKQTMSPMAFSPTYTSLMMSPVGGIGMGPSTPGLMVDTYALG 1537
Query: 197 GAYAPASPA--YMATSPGMGYSPSTPALAVS--SPGYSPGYSPTSPSVGARGGPAAGYAS 364
G+++P SP TSP SP +P S SP YSP YSPTSP A S
Sbjct: 1538 GSFSPTSPTSPMSPTSPMSPTSPMSPMSPTSAMSPVYSPAYSPTSPMSPTSPANALSPTS 1597
Query: 365 P-QSPGYVPTSPAYARPGTVVAAANVYSPSSP-------------AYSPFSPNYA----- 487
P SP Y PTSP A T + YSP+SP AYSP SPNY
Sbjct: 1598 PVYSPAYSPTSPTSAMSPTSPVYSPAYSPTSPNLGYAPTSPVYSPAYSPTSPNYGYSPTS 1657
Query: 488 --AASSPAYQP 514
+ +SPAY P
Sbjct: 1658 PLSPTSPAYSP 1668
Score = 76.3 bits (186), Expect = 1e-12
Identities = 61/162 (37%), Positives = 81/162 (50%), Gaps = 5/162 (3%)
Frame = +2
Query: 11 TASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAG 190
T+ SP+ ++ + + M+P + + ++P SP SP MS P
Sbjct: 1543 TSPTSPMSPTSPMSPTSPMSPMSPTSAMSPVYSPAYSPTSP----MS----------PTS 1588
Query: 191 GAGAYAPASPAYMATSPGMGYSPSTPALAVS--SPGYSPGYSPTSPSVGARGGPAAGYAS 364
A A +P SP Y SP YSP++P A+S SP YSP YSPTSP++G A +
Sbjct: 1589 PANALSPTSPVY---SP--AYSPTSPTSAMSPTSPVYSPAYSPTSPNLG-----YAPTSP 1638
Query: 365 PQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYS---PFSPN 481
SP Y PTSP Y T + SP+SPAYS PFSPN
Sbjct: 1639 VYSPAYSPTSPNYGYSPT-----SPLSPTSPAYSPTDPFSPN 1675
[187][TOP]
>UniRef100_B9PMD7 DNA-directed RNA polymerase n=2 Tax=Toxoplasma gondii
RepID=B9PMD7_TOXGO
Length = 1892
Score = 80.9 bits (198), Expect = 5e-14
Identities = 67/178 (37%), Positives = 81/178 (45%), Gaps = 21/178 (11%)
Frame = +2
Query: 23 SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
SP S A A+P PG GR TP +SP SP MSP F P
Sbjct: 1694 SPAYSPTSALSIASP---VPGVGGDGR-TP-LSPFSPSNNPMSPHFSASTSYSPTSPVQQ 1748
Query: 203 YAPASPAYMATSP-GMGYSPSTPALAVSSPGYSPG---YSPTSPSVGARGGPAAGYASPQ 370
P SP TSP YSP++P + +SP YSP YSP SPS GA GP + + Q
Sbjct: 1749 SNPTSP----TSPYSPAYSPTSPRYSPTSPMYSPTFAPYSPQSPSYGAGQGPLSPSFTVQ 1804
Query: 371 SPGYVPTSPAYARPGTVV--------------AAANVYSPSSPAY---SPFSPNYAAA 493
SP Y P+SPA P + + + YSP+SP Y PFSP+ AA
Sbjct: 1805 SPRYSPSSPAAYSPTSPMPNVAGSPSYEDSHAPGGDTYSPTSPMYEANDPFSPDPFAA 1862
Score = 71.2 bits (173), Expect = 4e-11
Identities = 56/164 (34%), Positives = 75/164 (45%), Gaps = 17/164 (10%)
Frame = +2
Query: 62 TPGRM-TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATS 238
+PG + + GR G ++P SP Y+ SP +Y+P SPAY TS
Sbjct: 1656 SPGGVGSDGRGRGGSYSPTSPTLSPSYSPSSPP--------------SYSPTSPAYSPTS 1701
Query: 239 --------PGMG------YSPSTPALAVSSPGYSPG--YSPTSPSVGARGGPAAGYASPQ 370
PG+G SP +P+ SP +S YSPTSP + P + SP
Sbjct: 1702 ALSIASPVPGVGGDGRTPLSPFSPSNNPMSPHFSASTSYSPTSPV--QQSNPTSP-TSPY 1758
Query: 371 SPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSP 502
SP Y PTSP Y+ + +YSP+ YSP SP+Y A P
Sbjct: 1759 SPAYSPTSPRYS------PTSPMYSPTFAPYSPQSPSYGAGQGP 1796
Score = 70.1 bits (170), Expect = 9e-11
Identities = 67/213 (31%), Positives = 88/213 (41%), Gaps = 47/213 (22%)
Frame = +2
Query: 23 SPIMSSADAAGRATPGRMTPGRSPAGRFTPR-------MSPASPGYAAMSPRFG------ 163
SP+ + + R ++P P G F+P + +SP Y+ SP+
Sbjct: 1587 SPLSPLSCFSPRNPLSPLSPSGPPGGVFSPTSPILGSALETSSPSYSPSSPQSAYFQNDG 1646
Query: 164 -----------GGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP--- 301
GG+G G G+Y+P SP SP YSPS+P P YSP
Sbjct: 1647 SSSAVDMVISPGGVGSDGRGRGGSYSPTSPTL---SPS--YSPSSP------PSYSPTSP 1695
Query: 302 GYSPTS--------PSVGARG----GPAAGYASPQSP------GYVPTSPAYARPGTVVA 427
YSPTS P VG G P + +P SP Y PTSP T
Sbjct: 1696 AYSPTSALSIASPVPGVGGDGRTPLSPFSPSNNPMSPHFSASTSYSPTSPVQQSNPTSPT 1755
Query: 428 A--ANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
+ + YSP+SP YSP SP Y+ +P Y P S
Sbjct: 1756 SPYSPAYSPTSPRYSPTSPMYSPTFAP-YSPQS 1787
Score = 70.1 bits (170), Expect = 9e-11
Identities = 53/176 (30%), Positives = 71/176 (40%), Gaps = 17/176 (9%)
Frame = +2
Query: 23 SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
SP S++ + +P + + SP ++P SP SP Y+ SP +
Sbjct: 1731 SPHFSASTSYSPTSPVQQSNPTSPTSPYSPAYSPTSPRYSPTSPMYSPTFA--------P 1782
Query: 203 YAPASPAYMATSPGMGYSPSTPALAVSSPGYSPG----YSPTSPSVGARGGPAAGYASPQ 370
Y+P SP+Y G G P +P+ V SP YSP YSPTSP G P+ Y
Sbjct: 1783 YSPQSPSY-----GAGQGPLSPSFTVQSPRYSPSSPAAYSPTSPMPNVAGSPS--YEDSH 1835
Query: 371 SPG---YVPTSPAYARPG----------TVVAAANVYSPSSPAYSPFSPNYAAASS 499
+PG Y PTSP Y V +V + SP PN S
Sbjct: 1836 APGGDTYSPTSPMYEANDPFSPDPFAAEVVDEVGDVAALESPTEDTLGPNQGRGGS 1891
Score = 57.8 bits (138), Expect = 5e-07
Identities = 59/199 (29%), Positives = 80/199 (40%), Gaps = 43/199 (21%)
Frame = +2
Query: 53 GRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMA 232
G+ +P + TP RSP SP SP + SPR P SP +
Sbjct: 1573 GKFSPTQQTP-RSPT-------SPLSP-LSCFSPR----------------NPLSPLSPS 1607
Query: 233 TSPGMGYSPSTPALAVSSPGYSPGYSPTSP---------------------SVGARGGPA 349
PG +SP++P L + SP YSP+SP VG+ G
Sbjct: 1608 GPPGGVFSPTSPILGSALETSSPSYSPSSPQSAYFQNDGSSSAVDMVISPGGVGSDGRGR 1667
Query: 350 AGYASPQS------------PGYVPTSPAYARPGTVVAAANV----------YSPSSPAY 463
G SP S P Y PTSPAY+ + A+ V SP SP+
Sbjct: 1668 GGSYSPTSPTLSPSYSPSSPPSYSPTSPAYSPTSALSIASPVPGVGGDGRTPLSPFSPSN 1727
Query: 464 SPFSPNYAAASSPAYQPPS 520
+P SP+++A++S Y P S
Sbjct: 1728 NPMSPHFSASTS--YSPTS 1744
[188][TOP]
>UniRef100_B6KEC6 DNA-directed RNA polymerase n=1 Tax=Toxoplasma gondii ME49
RepID=B6KEC6_TOXGO
Length = 1892
Score = 80.9 bits (198), Expect = 5e-14
Identities = 67/178 (37%), Positives = 81/178 (45%), Gaps = 21/178 (11%)
Frame = +2
Query: 23 SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
SP S A A+P PG GR TP +SP SP MSP F P
Sbjct: 1694 SPAYSPTSALSIASP---VPGVGGDGR-TP-LSPFSPSNNPMSPHFSASTSYSPTSPVQQ 1748
Query: 203 YAPASPAYMATSP-GMGYSPSTPALAVSSPGYSPG---YSPTSPSVGARGGPAAGYASPQ 370
P SP TSP YSP++P + +SP YSP YSP SPS GA GP + + Q
Sbjct: 1749 SNPTSP----TSPYSPAYSPTSPRYSPTSPMYSPTFAPYSPQSPSYGAGQGPLSPSFTVQ 1804
Query: 371 SPGYVPTSPAYARPGTVV--------------AAANVYSPSSPAY---SPFSPNYAAA 493
SP Y P+SPA P + + + YSP+SP Y PFSP+ AA
Sbjct: 1805 SPRYSPSSPAAYSPTSPMPNVAGSPSYEDSHAPGGDTYSPTSPMYEANDPFSPDPFAA 1862
Score = 70.1 bits (170), Expect = 9e-11
Identities = 55/164 (33%), Positives = 75/164 (45%), Gaps = 17/164 (10%)
Frame = +2
Query: 62 TPGRM-TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATS 238
+PG + + GR G ++P SP Y+ +P +Y+P SPAY TS
Sbjct: 1656 SPGGVGSDGRGRGGSYSPTSPTLSPSYSPSAPP--------------SYSPTSPAYSPTS 1701
Query: 239 --------PGMG------YSPSTPALAVSSPGYSPG--YSPTSPSVGARGGPAAGYASPQ 370
PG+G SP +P+ SP +S YSPTSP + P + SP
Sbjct: 1702 ALSIASPVPGVGGDGRTPLSPFSPSNNPMSPHFSASTSYSPTSPV--QQSNPTSP-TSPY 1758
Query: 371 SPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSP 502
SP Y PTSP Y+ + +YSP+ YSP SP+Y A P
Sbjct: 1759 SPAYSPTSPRYS------PTSPMYSPTFAPYSPQSPSYGAGQGP 1796
Score = 70.1 bits (170), Expect = 9e-11
Identities = 53/176 (30%), Positives = 71/176 (40%), Gaps = 17/176 (9%)
Frame = +2
Query: 23 SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
SP S++ + +P + + SP ++P SP SP Y+ SP +
Sbjct: 1731 SPHFSASTSYSPTSPVQQSNPTSPTSPYSPAYSPTSPRYSPTSPMYSPTFA--------P 1782
Query: 203 YAPASPAYMATSPGMGYSPSTPALAVSSPGYSPG----YSPTSPSVGARGGPAAGYASPQ 370
Y+P SP+Y G G P +P+ V SP YSP YSPTSP G P+ Y
Sbjct: 1783 YSPQSPSY-----GAGQGPLSPSFTVQSPRYSPSSPAAYSPTSPMPNVAGSPS--YEDSH 1835
Query: 371 SPG---YVPTSPAYARPG----------TVVAAANVYSPSSPAYSPFSPNYAAASS 499
+PG Y PTSP Y V +V + SP PN S
Sbjct: 1836 APGGDTYSPTSPMYEANDPFSPDPFAAEVVDEVGDVAALESPTEDTLGPNQGRGGS 1891
Score = 69.7 bits (169), Expect = 1e-10
Identities = 67/213 (31%), Positives = 87/213 (40%), Gaps = 47/213 (22%)
Frame = +2
Query: 23 SPIMSSADAAGRATPGRMTPGRSPAGRFTPR-------MSPASPGYAAMSPRFG------ 163
SP+ + + R ++P P G F+P + +SP Y+ SP+
Sbjct: 1587 SPLSPLSCFSPRNPLSPLSPSGPPGGVFSPTSPILGSALETSSPSYSPSSPQSAYFQNDG 1646
Query: 164 -----------GGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP--- 301
GG+G G G+Y+P SP SP YSPS P P YSP
Sbjct: 1647 SSSAVDMVISPGGVGSDGRGRGGSYSPTSPTL---SPS--YSPSAP------PSYSPTSP 1695
Query: 302 GYSPTS--------PSVGARG----GPAAGYASPQSP------GYVPTSPAYARPGTVVA 427
YSPTS P VG G P + +P SP Y PTSP T
Sbjct: 1696 AYSPTSALSIASPVPGVGGDGRTPLSPFSPSNNPMSPHFSASTSYSPTSPVQQSNPTSPT 1755
Query: 428 A--ANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
+ + YSP+SP YSP SP Y+ +P Y P S
Sbjct: 1756 SPYSPAYSPTSPRYSPTSPMYSPTFAP-YSPQS 1787
Score = 57.8 bits (138), Expect = 5e-07
Identities = 59/199 (29%), Positives = 80/199 (40%), Gaps = 43/199 (21%)
Frame = +2
Query: 53 GRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMA 232
G+ +P + TP RSP SP SP + SPR P SP +
Sbjct: 1573 GKFSPTQQTP-RSPT-------SPLSP-LSCFSPR----------------NPLSPLSPS 1607
Query: 233 TSPGMGYSPSTPALAVSSPGYSPGYSPTSP---------------------SVGARGGPA 349
PG +SP++P L + SP YSP+SP VG+ G
Sbjct: 1608 GPPGGVFSPTSPILGSALETSSPSYSPSSPQSAYFQNDGSSSAVDMVISPGGVGSDGRGR 1667
Query: 350 AGYASPQS------------PGYVPTSPAYARPGTVVAAANV----------YSPSSPAY 463
G SP S P Y PTSPAY+ + A+ V SP SP+
Sbjct: 1668 GGSYSPTSPTLSPSYSPSAPPSYSPTSPAYSPTSALSIASPVPGVGGDGRTPLSPFSPSN 1727
Query: 464 SPFSPNYAAASSPAYQPPS 520
+P SP+++A++S Y P S
Sbjct: 1728 NPMSPHFSASTS--YSPTS 1744
[189][TOP]
>UniRef100_A8N128 DNA-directed RNA polymerase n=1 Tax=Coprinopsis cinerea okayama7#130
RepID=A8N128_COPC7
Length = 1642
Score = 80.9 bits (198), Expect = 5e-14
Identities = 62/164 (37%), Positives = 77/164 (46%), Gaps = 7/164 (4%)
Frame = +2
Query: 8 ATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPA 187
A + S AG +PG PG SP+ SP SPG SP G P
Sbjct: 1475 ANFQYMSFPQSPHGAGGMSPG---PGYSPSS--PNAYSPTSPGMVPRSPY------GAPT 1523
Query: 188 GGAGAYAPASPAY----MATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARGGP 346
SP Y ATSP YSP++P ++SP YSP G+SPTSP+ + P
Sbjct: 1524 SPFSNQYATSPFYDSRRQATSPT--YSPTSPIAGLTSPAYSPTSPGFSPTSPNGYSPQSP 1581
Query: 347 AAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSP 478
+ SP SP Y P SP+Y+ A+ YSPSSP +SP SP
Sbjct: 1582 --NFGSPASPNYSPASPSYSP----APASPNYSPSSPTWSPTSP 1619
Score = 76.3 bits (186), Expect = 1e-12
Identities = 74/205 (36%), Positives = 90/205 (43%), Gaps = 42/205 (20%)
Frame = +2
Query: 32 MSSADAAGRATPGRM--TP---------------GRSPAGRFTPRMSPASPGYA------ 142
M +A G TPG++ TP G S F+P S + A
Sbjct: 1422 MLAAQIDGAMTPGQVAITPYATNSPDWIQDEFFKGDSGPSAFSPLASNGAEDTANFQYMS 1481
Query: 143 -AMSPRFGGGLGGGPAGGAGAYAPASP-AYMATSPGMGYSPSTPALAVSSP--------- 289
SP GG+ GP Y+P+SP AY TSPGM P +P A +SP
Sbjct: 1482 FPQSPHGAGGMSPGPG-----YSPSSPNAYSPTSPGM--VPRSPYGAPTSPFSNQYATSP 1534
Query: 290 -------GYSPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSP 448
SP YSPTSP G PA SP SPG+ PTSP P + N SP
Sbjct: 1535 FYDSRRQATSPTYSPTSPIAGLTS-PAY---SPTSPGFSPTSPNGYSP----QSPNFGSP 1586
Query: 449 SSPAYSPFSPNYA-AASSPAYQPPS 520
+SP YSP SP+Y+ A +SP Y P S
Sbjct: 1587 ASPNYSPASPSYSPAPASPNYSPSS 1611
[190][TOP]
>UniRef100_C6F0A2 RNA polymerase II (Fragment) n=1 Tax=Plasmodium falciparum
RepID=C6F0A2_PLAFA
Length = 223
Score = 80.1 bits (196), Expect = 9e-14
Identities = 57/142 (40%), Positives = 72/142 (50%), Gaps = 8/142 (5%)
Frame = +2
Query: 107 TPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSS 286
+P+ SP SP Y+ SP+ Y+P SP Y TSP YSP++P + +S
Sbjct: 44 SPKYSPTSPKYSPTSPK---------------YSPTSPKYSPTSPK--YSPTSPKYSPTS 86
Query: 287 PGYSPG---YSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTV---VAAANV--Y 442
P YSP YSPTSP SP SP Y PTSP Y+ V +A+ N Y
Sbjct: 87 PKYSPTSPKYSPTSPKY-----------SPTSPKYSPTSPKYSPTSPVAQNIASPNYSPY 135
Query: 443 SPSSPAYSPFSPNYAAASSPAY 508
S +SP +SP SP Y + SSP Y
Sbjct: 136 SITSPKFSPTSPAY-SISSPVY 156
Score = 77.4 bits (189), Expect = 6e-13
Identities = 55/147 (37%), Positives = 71/147 (48%), Gaps = 13/147 (8%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
+P SP +P+ SP SP Y+ SP++ + + Y+P SP Y TSP YS
Sbjct: 44 SPKYSPT---SPKYSPTSPKYSPTSPKY--------SPTSPKYSPTSPKYSPTSPK--YS 90
Query: 257 PSTPALAVSSPGYSPG---YSPTSPSVGARGGPAAGYASPQ-------SPGYVPTSPAYA 406
P++P + +SP YSP YSPTSP A ASP SP + PTSPAY+
Sbjct: 91 PTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPVAQNIASPNYSPYSITSPKFSPTSPAYS 150
Query: 407 RPGTVV---AAANVYSPSSPAYSPFSP 478
V N + P SPAY SP
Sbjct: 151 ISSPVYDKSGVVNAHQPMSPAYILQSP 177
Score = 75.9 bits (185), Expect = 2e-12
Identities = 53/134 (39%), Positives = 64/134 (47%), Gaps = 3/134 (2%)
Frame = +2
Query: 128 SPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSPG- 304
SP Y+ SP+ Y+P SP Y TSP YSP++P + +SP YSP
Sbjct: 37 SPVYSVTSPK---------------YSPTSPKYSPTSPK--YSPTSPKYSPTSPKYSPTS 79
Query: 305 --YSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSP 478
YSPTSP SP SP Y PTSP Y+ + YSP+SP YSP SP
Sbjct: 80 PKYSPTSPKY-----------SPTSPKYSPTSPKYS------PTSPKYSPTSPKYSPTSP 122
Query: 479 NYAAASSPAYQPPS 520
+SP Y P S
Sbjct: 123 VAQNIASPNYSPYS 136
Score = 70.9 bits (172), Expect = 5e-11
Identities = 50/126 (39%), Positives = 63/126 (50%), Gaps = 20/126 (15%)
Frame = +2
Query: 203 YAPASPAYMA-------TSP---------GMGYSPSTPALAVSSPGY---SPGYSPTSPS 325
Y+P SP Y A TSP Y+ +P +V+SP Y SP YSPTSP
Sbjct: 1 YSPTSPTYNANNAYYSPTSPKNQNDQMNVNSQYNVMSPVYSVTSPKYSPTSPKYSPTSP- 59
Query: 326 VGARGGPAAGYASPQSPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSP 502
+ P + SP SP Y PTSP Y+ + + YSP+SP YSP SP Y + +SP
Sbjct: 60 ---KYSPTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPKY-SPTSP 115
Query: 503 AYQPPS 520
Y P S
Sbjct: 116 KYSPTS 121
[191][TOP]
>UniRef100_C6F1E9 RNA polymerase II (Fragment) n=1 Tax=Plasmodium vivax
RepID=C6F1E9_PLAVI
Length = 225
Score = 79.7 bits (195), Expect = 1e-13
Identities = 58/146 (39%), Positives = 71/146 (48%), Gaps = 14/146 (9%)
Frame = +2
Query: 119 SPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMA--TSPGMG--YSPSTPALAVSS 286
SP SP Y +P GGG G G Y+P SP +P M +S +P +V+S
Sbjct: 2 SPTSPTYHLTNPASGGG-SSGLNGTKAYYSPTSPTNQLDEVNPNMMKYHSVVSPVYSVTS 60
Query: 287 PGYSPG---YSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSP 457
P YSP YSPTSP P + SP SP Y PTSP Y+ + YSP+SP
Sbjct: 61 PKYSPTSPKYSPTSPKYS----PTSPKYSPTSPKYSPTSPKYS------PTSPKYSPTSP 110
Query: 458 AYSPFSPNYAAA-------SSPAYQP 514
YSP SP Y+ + SSP Y P
Sbjct: 111 KYSPTSPQYSPSSPVPNNPSSPHYSP 136
Score = 70.5 bits (171), Expect = 7e-11
Identities = 48/132 (36%), Positives = 66/132 (50%), Gaps = 8/132 (6%)
Frame = +2
Query: 107 TPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSS 286
+P+ SP SP Y+ SP++ + + Y+P SP Y TSP YSP++P + +S
Sbjct: 60 SPKYSPTSPKYSPTSPKY--------SPTSPKYSPTSPKYSPTSPK--YSPTSPKYSPTS 109
Query: 287 PGYSPGYSPTSPSVGARGGPAAGYASP---QSPGYVPTSPAYARPGTVV-----AAANVY 442
P YSP SPS P++ + SP SP + PTSPAY+ V A +
Sbjct: 110 PKYSPTSPQYSPSSPVPNNPSSPHYSPYAIASPKFSPTSPAYSISSPVYDQSGNARSKSQ 169
Query: 443 SPSSPAYSPFSP 478
P SPAY SP
Sbjct: 170 HPLSPAYILQSP 181
Score = 70.1 bits (170), Expect = 9e-11
Identities = 51/134 (38%), Positives = 63/134 (47%), Gaps = 28/134 (20%)
Frame = +2
Query: 203 YAPASPAYMATSPGMG------------YSPSTPA-------------LAVSSPGY---S 298
Y+P SP Y T+P G YSP++P +V SP Y S
Sbjct: 1 YSPTSPTYHLTNPASGGGSSGLNGTKAYYSPTSPTNQLDEVNPNMMKYHSVVSPVYSVTS 60
Query: 299 PGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSP 478
P YSPTSP + P + SP SP Y PTSP Y+ + YSP+SP YSP SP
Sbjct: 61 PKYSPTSP----KYSPTSPKYSPTSPKYSPTSPKYS------PTSPKYSPTSPKYSPTSP 110
Query: 479 NYAAASSPAYQPPS 520
Y + +SP Y P S
Sbjct: 111 KY-SPTSPQYSPSS 123
[192][TOP]
>UniRef100_UPI000069EED3 UPI000069EED3 related cluster n=1 Tax=Xenopus (Silurana) tropicalis
RepID=UPI000069EED3
Length = 216
Score = 77.0 bits (188), Expect = 7e-13
Identities = 58/166 (34%), Positives = 85/166 (51%), Gaps = 12/166 (7%)
Frame = +2
Query: 59 ATPGRMTPGRSPAGRFTPR----MSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAY 226
+TPG +TP S G TP ++P++PGY ++P G L G P++P Y
Sbjct: 63 STPGYLTP--STPGYLTPSTPGYLTPSTPGY--LTPSTPGYL---TPSTPGYLTPSTPGY 115
Query: 227 MATSPGMGYSPSTPA-LAVSSPGY----SPGY-SPTSPSVGARGGPAAGYASPQSPGYV- 385
+ S +PSTP L S+PGY +PGY +P++P GY +P +PGY+
Sbjct: 116 LTLSTPGYLTPSTPGYLTPSTPGYLTPRTPGYLTPSTP----------GYLTPSTPGYLT 165
Query: 386 PTSPAYARPGTVVAAANVYSPSSPAY-SPFSPNYAAASSPAYQPPS 520
P++P Y P T +PS+P Y +P +P Y S+P Y PS
Sbjct: 166 PSTPGYLTPST----PGYLTPSTPGYLTPSTPGYLTPSTPGYLTPS 207
Score = 67.0 bits (162), Expect = 8e-10
Identities = 43/116 (37%), Positives = 62/116 (53%), Gaps = 8/116 (6%)
Frame = +2
Query: 197 GAYAPASPAYMATSPGMGYSPSTPA-LAVSSPGY----SPGY-SPTSPSVGARGGPAAGY 358
G P++P Y+ S +PSTP L S+PGY +PGY +P++P P GY
Sbjct: 18 GYLTPSTPGYLTPSTPGYLTPSTPGYLTPSTPGYLTPSTPGYLTPSTPGYLTPSTP--GY 75
Query: 359 ASPQSPGYV-PTSPAYARPGTVVAAANVYSPSSPAY-SPFSPNYAAASSPAYQPPS 520
+P +PGY+ P++P Y P T +PS+P Y +P +P Y S+P Y PS
Sbjct: 76 LTPSTPGYLTPSTPGYLTPST----PGYLTPSTPGYLTPSTPGYLTLSTPGYLTPS 127
[193][TOP]
>UniRef100_C6F1F0 RNA polymerase II (Fragment) n=1 Tax=Plasmodium vivax
RepID=C6F1F0_PLAVI
Length = 218
Score = 76.3 bits (186), Expect = 1e-12
Identities = 57/146 (39%), Positives = 69/146 (47%), Gaps = 14/146 (9%)
Frame = +2
Query: 119 SPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMA--TSPGMG--YSPSTPALAVSS 286
SP SP Y +P GGG G G Y+P SP +P M +S +P +V+S
Sbjct: 2 SPTSPTYHLTNPASGGG-SSGLNGTKAYYSPTSPTNQLDEVNPNMMKYHSVVSPVYSVTS 60
Query: 287 PGYSPG---YSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSP 457
P YSP YSPTSP SP SP Y PTSP Y+ + YSP+SP
Sbjct: 61 PKYSPTSPKYSPTSPKY-----------SPTSPKYSPTSPKYS------PTSPKYSPTSP 103
Query: 458 AYSPFSPNYAAA-------SSPAYQP 514
YSP SP Y+ + SSP Y P
Sbjct: 104 KYSPTSPQYSPSSPVPNNPSSPHYSP 129
Score = 68.6 bits (166), Expect = 3e-10
Identities = 48/132 (36%), Positives = 63/132 (47%), Gaps = 8/132 (6%)
Frame = +2
Query: 107 TPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSS 286
+P+ SP SP Y+ SP+ Y+P SP Y TSP YSP++P + +S
Sbjct: 60 SPKYSPTSPKYSPTSPK---------------YSPTSPKYSPTSPK--YSPTSPKYSPTS 102
Query: 287 PGYSPGYSPTSPSVGARGGPAAGYASP---QSPGYVPTSPAYARPGTVV-----AAANVY 442
P YSP SPS P++ + SP SP + PTSPAY+ V A +
Sbjct: 103 PKYSPTSPQYSPSSPVPNNPSSPHYSPYAIASPKFSPTSPAYSISSPVYDQSGNARSKSQ 162
Query: 443 SPSSPAYSPFSP 478
P SPAY SP
Sbjct: 163 HPLSPAYILQSP 174
[194][TOP]
>UniRef100_B3L428 DNA-directed RNA polymerase n=1 Tax=Plasmodium knowlesi strain H
RepID=B3L428_PLAKH
Length = 2353
Score = 76.3 bits (186), Expect = 1e-12
Identities = 58/144 (40%), Positives = 70/144 (48%), Gaps = 7/144 (4%)
Frame = +2
Query: 104 FTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMAT--SPGMG--YSPSTPA 271
++P SP SP Y S GG G Y+P SP +P M +S +PA
Sbjct: 2132 YSPSYSPTSPTYHLSSNVNAGG-SSGLNDTKAFYSPTSPKNQMDEMNPNMMKYHSVLSPA 2190
Query: 272 LAVSSPGYSPG---YSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVAAANVY 442
AV+SP YSP YSPTSP P + SP SP Y PTSP Y+ + Y
Sbjct: 2191 YAVTSPKYSPTSPKYSPTSPKYM----PTSPKYSPTSPKYSPTSPKYS------PTSPKY 2240
Query: 443 SPSSPAYSPFSPNYAAASSPAYQP 514
SP+SP YSP SP + SSP Y P
Sbjct: 2241 SPTSPQYSPTSPVPNSPSSPHYSP 2264
Score = 72.0 bits (175), Expect = 2e-11
Identities = 51/130 (39%), Positives = 66/130 (50%), Gaps = 3/130 (2%)
Frame = +2
Query: 119 SPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYS 298
S SP YA SP++ + + Y+P SP YM TSP YSP++P + +SP YS
Sbjct: 2185 SVLSPAYAVTSPKY--------SPTSPKYSPTSPKYMPTSPK--YSPTSPKYSPTSPKYS 2234
Query: 299 PG---YSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSP 469
P YSPTSP SP SP VP SP+ A+ +SP+SPAYS
Sbjct: 2235 PTSPKYSPTSPQY-----------SPTSP--VPNSPSSPHYSPYAIASPKFSPTSPAYSI 2281
Query: 470 FSPNYAAASS 499
SP Y +S+
Sbjct: 2282 SSPVYDQSSN 2291
Score = 69.3 bits (168), Expect = 2e-10
Identities = 54/144 (37%), Positives = 68/144 (47%), Gaps = 8/144 (5%)
Frame = +2
Query: 89 SPAGRFT-PRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPST 265
SPA T P+ SP SP Y+ SP+ Y P SP Y TSP YSP++
Sbjct: 2188 SPAYAVTSPKYSPTSPKYSPTSPK---------------YMPTSPKYSPTSPK--YSPTS 2230
Query: 266 PALAVSSPGYSPG---YSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVAAAN 436
P + +SP YSP YSPTSP + P + SP + PTSPAY+ ++
Sbjct: 2231 PKYSPTSPKYSPTSPQYSPTSPVPNSPSSPHYSPYAIASPKFSPTSPAYS------ISSP 2284
Query: 437 VYSPSSPAYS----PFSPNYAAAS 496
VY SS A + P SP Y S
Sbjct: 2285 VYDQSSNARNRNQHPLSPAYILQS 2308
Score = 58.9 bits (141), Expect = 2e-07
Identities = 59/201 (29%), Positives = 77/201 (38%), Gaps = 50/201 (24%)
Frame = +2
Query: 68 GRMTPGRSPAGR-------FTP----RMSPASPGYAAMSPRFGGGLGGGPAG-GAGAYAP 211
G+ +P +SP F+P P PG SP+ A ++P
Sbjct: 2039 GKFSPTQSPRSPTSVIHSPFSPFDNNNQQPLDPGMMLFSPKNNQNNSSSMAMMNYNVFSP 2098
Query: 212 ASPAYMATSPGMGYSPSTPALAVSSPG-------YSPGYSPTSP----SVGARGGPAAG- 355
+ SP M YSP+ P L + SP YSP YSPTSP S G ++G
Sbjct: 2099 KANLDNIHSPAMLYSPNRP-LDIFSPKQQTQNNIYSPSYSPTSPTYHLSSNVNAGGSSGL 2157
Query: 356 -------------------------YASPQSPGYVPTSPAYARPGTVVAAAN-VYSPSSP 457
Y S SP Y TSP Y+ + + Y P+SP
Sbjct: 2158 NDTKAFYSPTSPKNQMDEMNPNMMKYHSVLSPAYAVTSPKYSPTSPKYSPTSPKYMPTSP 2217
Query: 458 AYSPFSPNYAAASSPAYQPPS 520
YSP SP Y + +SP Y P S
Sbjct: 2218 KYSPTSPKY-SPTSPKYSPTS 2237
Score = 53.5 bits (127), Expect = 9e-06
Identities = 50/170 (29%), Positives = 68/170 (40%), Gaps = 13/170 (7%)
Frame = +2
Query: 8 ATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPA 187
A A SP S T + P +P+ SP SP Y+ SP+
Sbjct: 2190 AYAVTSPKYSPTSPKYSPTSPKYMPTSPKYSPTSPKYSPTSPKYSPTSPK---------- 2239
Query: 188 GGAGAYAPASPAYMATSPGMGYSPSTP---ALAVSSPGY---SPGYSPTSPSVGARGGPA 349
Y+P SP Y TSP + SPS+P A++SP + SP YS +SP
Sbjct: 2240 -----YSPTSPQYSPTSP-VPNSPSSPHYSPYAIASPKFSPTSPAYSISSPVYDQSSNAR 2293
Query: 350 AGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYS-------PFSP 478
P SP Y+ SP + + +V+SP A + PFSP
Sbjct: 2294 NRNQHPLSPAYILQSPVQVKQH--IQDVSVFSPIQQANADEAQNDDPFSP 2341
[195][TOP]
>UniRef100_A5K7P4 DNA-directed RNA polymerase n=1 Tax=Plasmodium vivax
RepID=A5K7P4_PLAVI
Length = 2379
Score = 76.3 bits (186), Expect = 1e-12
Identities = 58/150 (38%), Positives = 75/150 (50%), Gaps = 15/150 (10%)
Frame = +2
Query: 104 FTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMA--TSPGMG--YSPSTPA 271
++P SP SP Y +P GGG G G Y+P SP +P M +S +P
Sbjct: 2165 YSPSYSPTSPTYHLTNPASGGG-SSGLNGTKAYYSPTSPTNQLDEVNPNMMKYHSVVSPV 2223
Query: 272 LAVSSPGYSPG---YSPTSPS---VGARGGPAAGYASPQSPGYVPTSPAYARPGTVV--A 427
+V+SP YSP YSPTSP + P + SP SP Y PTSP Y+ V
Sbjct: 2224 YSVTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPQYSPSSPVPNNP 2283
Query: 428 AANVYSP---SSPAYSPFSPNYAAASSPAY 508
++ YSP +SP +SP SP Y + SSP Y
Sbjct: 2284 SSPHYSPYAIASPKFSPTSPAY-SISSPVY 2312
Score = 63.5 bits (153), Expect = 8e-09
Identities = 46/128 (35%), Positives = 62/128 (48%), Gaps = 8/128 (6%)
Frame = +2
Query: 119 SPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYS 298
S SP Y+ SP++ + + Y+P SP Y TSP YSP++P + +SP YS
Sbjct: 2218 SVVSPVYSVTSPKY--------SPTSPKYSPTSPKYSPTSPK--YSPTSPKYSPTSPKYS 2267
Query: 299 PGYSPTSPSVGARGGPAAGYASP---QSPGYVPTSPAYARPGTVV-----AAANVYSPSS 454
P SPS P++ + SP SP + PTSPAY+ V A + P S
Sbjct: 2268 PTSPQYSPSSPVPNNPSSPHYSPYAIASPKFSPTSPAYSISSPVYDQSGNARSKSQHPLS 2327
Query: 455 PAYSPFSP 478
PAY SP
Sbjct: 2328 PAYILQSP 2335
Score = 58.9 bits (141), Expect = 2e-07
Identities = 61/209 (29%), Positives = 77/209 (36%), Gaps = 68/209 (32%)
Frame = +2
Query: 98 GRFTPRMSPASPGYAAMSP-----------------------RFGGGLGGGPAGGAGAYA 208
G+F+P SP SP SP G ++
Sbjct: 2071 GKFSPTQSPKSPTSVIHSPFSPFDNHNQQALDPSMLFSPKNNNVGSSSNSMSMMNYNVFS 2130
Query: 209 PASPAYMATSPGMGYSPSTPALAVSSPG-------YSPGYSPTSPSV----GARGGPAAG 355
P + SP M YSP+ AL + SP YSP YSPTSP+ A GG ++G
Sbjct: 2131 PKANLNSIQSPAMLYSPNR-ALDLFSPKQQTQNNIYSPSYSPTSPTYHLTNPASGGGSSG 2189
Query: 356 ------YASP---------------------------QSPGYVPTSPAYARPGTVVAAAN 436
Y SP SP Y PTSP Y+ + +
Sbjct: 2190 LNGTKAYYSPTSPTNQLDEVNPNMMKYHSVVSPVYSVTSPKYSPTSPKYSPTSPKYSPTS 2249
Query: 437 -VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
YSP+SP YSP SP Y + +SP Y P S
Sbjct: 2250 PKYSPTSPKYSPTSPKY-SPTSPQYSPSS 2277
Score = 56.2 bits (134), Expect = 1e-06
Identities = 47/165 (28%), Positives = 70/165 (42%), Gaps = 13/165 (7%)
Frame = +2
Query: 23 SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
SP+ S T + +P +P+ SP SP Y+ SP+
Sbjct: 2221 SPVYSVTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPK--------------- 2265
Query: 203 YAPASPAYMATSPGMGYSPSTP---ALAVSSPGY---SPGYSPTSPSVGARGGPAAGYAS 364
Y+P SP Y +SP + +PS+P A++SP + SP YS +SP G +
Sbjct: 2266 YSPTSPQYSPSSP-VPNNPSSPHYSPYAIASPKFSPTSPAYSISSPVYDQSGNARSKSQH 2324
Query: 365 PQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYS-------PFSP 478
P SP Y+ SP + + +V+SP A + PFSP
Sbjct: 2325 PLSPAYILQSPVQVKQH--IQDVSVFSPIQQANAEEVQNDDPFSP 2367
[196][TOP]
>UniRef100_Q8MX30 DNA-directed RNA polymerase (Fragment) n=1 Tax=Naegleria gruberi
RepID=Q8MX30_NAEGR
Length = 1590
Score = 75.9 bits (185), Expect = 2e-12
Identities = 60/152 (39%), Positives = 71/152 (46%), Gaps = 3/152 (1%)
Frame = +2
Query: 62 TPGRMTP-GRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATS 238
T G MTP GR+P SP + GG P A + +SP TS
Sbjct: 1488 TQGAMTPLGRTP------------------SPEYQGGFSPSPYNSAFSPVASSP----TS 1525
Query: 239 PGM--GYSPSTPALAVSSPGYSPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARP 412
PG GYSPS+P YSPTSP+ SP SP Y PTSPAY+
Sbjct: 1526 PGHQGGYSPSSPG----------NYSPTSPAY-----------SPSSPNYSPTSPAYS-- 1562
Query: 413 GTVVAAANVYSPSSPAYSPFSPNYAAASSPAY 508
+ YSP+SPAYSP SPNY + +SPAY
Sbjct: 1563 ----PTSPNYSPTSPAYSPTSPNY-SPTSPAY 1589
Score = 66.6 bits (161), Expect = 1e-09
Identities = 53/135 (39%), Positives = 65/135 (48%), Gaps = 9/135 (6%)
Frame = +2
Query: 143 AMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSPGYSPT-- 316
A +P GL GG A+P + S TP SP Y G+SP+
Sbjct: 1458 ATTPYHTSGLATPYHGGV-----ATPYHGGASSPWTQGAMTPLGRTPSPEYQGGFSPSPY 1512
Query: 317 ----SPSVGARGGPA--AGYASPQSPG-YVPTSPAYARPGTVVAAANVYSPSSPAYSPFS 475
SP + P GY SP SPG Y PTSPAY+ ++ YSP+SPAYSP S
Sbjct: 1513 NSAFSPVASSPTSPGHQGGY-SPSSPGNYSPTSPAYS------PSSPNYSPTSPAYSPTS 1565
Query: 476 PNYAAASSPAYQPPS 520
PNY + +SPAY P S
Sbjct: 1566 PNY-SPTSPAYSPTS 1579
[197][TOP]
>UniRef100_Q17BN0 Putative uncharacterized protein n=1 Tax=Aedes aegypti
RepID=Q17BN0_AEDAE
Length = 729
Score = 75.9 bits (185), Expect = 2e-12
Identities = 58/176 (32%), Positives = 85/176 (48%), Gaps = 18/176 (10%)
Frame = +2
Query: 35 SSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAA-MSPRFGGGLGGGPAGGAGAYAP 211
+ ++ G PG P A + +PA+P Y A +P +G PA GA A AP
Sbjct: 213 AKSEDGGVVQPGYGAPAAPAAPAYGSHAAPAAPAYGAPAAPAYGA--PAAPAYGAHA-AP 269
Query: 212 ASPAY---MATSPGMGYSPSTPA----LAVSSPGYSPGYSPTSPSVGARGGPAAG-YASP 367
A+PAY A + G +P+ PA A ++P Y +P +P+ GA PA G +A+P
Sbjct: 270 AAPAYGAHAAPAYGSHAAPAAPAYGAHAAPAAPAYGAHAAPAAPAYGAHAAPAYGAHAAP 329
Query: 368 QSPGY----VPTSPAYARPGTVVAAANVY----SPSSPAYSPF-SPNYAAASSPAY 508
+P Y P A+A PG AA+ Y +P+ P Y +P Y A ++P Y
Sbjct: 330 AAPAYGAHAAPAYGAHAGPGCATHAASAYGAHIAPAGPVYGAHAAPAYGAHAAPVY 385
Score = 63.2 bits (152), Expect = 1e-08
Identities = 53/147 (36%), Positives = 71/147 (48%), Gaps = 17/147 (11%)
Frame = +2
Query: 119 SPASPGYAAMSPRFG---GGLGGGPAGGAGAY----APASPAYMATSPGMGYSPSTPAL- 274
S S GY A S G G G A A AY APA+PAY A P+ PA
Sbjct: 205 SEGSEGYGAKSEDGGVVQPGYGAPAAPAAPAYGSHAAPAAPAYGA--------PAAPAYG 256
Query: 275 AVSSPGYSPGYSPTSPSVGARGGPAAG-YASPQSPGY----VPTSPAYARPGTVVAAANV 439
A ++P Y +P +P+ GA PA G +A+P +P Y P +PAY A A
Sbjct: 257 APAAPAYGAHAAPAAPAYGAHAAPAYGSHAAPAAPAYGAHAAPAAPAYGAHAAPAAPA-Y 315
Query: 440 YSPSSPAY----SPFSPNYAAASSPAY 508
+ ++PAY +P +P Y A ++PAY
Sbjct: 316 GAHAAPAYGAHAAPAAPAYGAHAAPAY 342
Score = 54.3 bits (129), Expect = 5e-06
Identities = 41/129 (31%), Positives = 57/129 (44%), Gaps = 20/129 (15%)
Frame = +2
Query: 179 GPAG----GAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSPGYSPTSPSVGARGGP 346
GP G Y PA + GY + V PGY +P +P+ G+ P
Sbjct: 183 GPTGIHCDNCHIYHGDKPAEAKSEGSEGYGAKSEDGGVVQPGYGAPAAPAAPAYGSHAAP 242
Query: 347 AA-GYASPQSPGY-VPTSPAY------ARPGTVVAAANVY----SPSSPAY----SPFSP 478
AA Y +P +P Y P +PAY A P AA Y +P++PAY +P +P
Sbjct: 243 AAPAYGAPAAPAYGAPAAPAYGAHAAPAAPAYGAHAAPAYGSHAAPAAPAYGAHAAPAAP 302
Query: 479 NYAAASSPA 505
Y A ++PA
Sbjct: 303 AYGAHAAPA 311
[198][TOP]
>UniRef100_O77375 DNA-directed RNA polymerase n=1 Tax=Plasmodium falciparum 3D7
RepID=O77375_PLAF7
Length = 2457
Score = 75.9 bits (185), Expect = 2e-12
Identities = 50/130 (38%), Positives = 65/130 (50%), Gaps = 6/130 (4%)
Frame = +2
Query: 107 TPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSS 286
+P+ SP SP Y+ SP++ + + Y+P SP Y TSP YSP++P + +S
Sbjct: 2292 SPKYSPTSPKYSPTSPKY--------SPTSPKYSPTSPKYSPTSPK--YSPTSPKYSPTS 2341
Query: 287 PGYSPG---YSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVV---AAANVYSP 448
P YSP YSPTSP P S SP + PTSPAY+ V N + P
Sbjct: 2342 PKYSPTSPKYSPTSPVAQNIASPNYSPYSITSPKFSPTSPAYSISSPVYDKSGVVNAHQP 2401
Query: 449 SSPAYSPFSP 478
SPAY SP
Sbjct: 2402 MSPAYILQSP 2411
Score = 73.2 bits (178), Expect = 1e-11
Identities = 56/149 (37%), Positives = 72/149 (48%), Gaps = 14/149 (9%)
Frame = +2
Query: 104 FTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA---YAPASPAYMATSPGMGYSPSTPAL 274
++P SP SP Y A + + Y SP Y TSP YSP++P
Sbjct: 2245 YSPSYSPTSPTYNANNAYYSPTSPKNQNDQMNVNSQYNVMSPVYSVTSPK--YSPTSPKY 2302
Query: 275 AVSSPGYSPG---YSPTSPS---VGARGGPAAGYASPQSPGYVPTSPAYARPGTV---VA 427
+ +SP YSP YSPTSP + P + SP SP Y PTSP Y+ V +A
Sbjct: 2303 SPTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPVAQNIA 2362
Query: 428 AANV--YSPSSPAYSPFSPNYAAASSPAY 508
+ N YS +SP +SP SP Y + SSP Y
Sbjct: 2363 SPNYSPYSITSPKFSPTSPAY-SISSPVY 2390
[199][TOP]
>UniRef100_Q54LJ4 Type A von Willebrand factor domain-containing protein n=1
Tax=Dictyostelium discoideum RepID=Q54LJ4_DICDI
Length = 2563
Score = 75.5 bits (184), Expect = 2e-12
Identities = 61/166 (36%), Positives = 75/166 (45%), Gaps = 22/166 (13%)
Frame = +2
Query: 89 SPAGRFTPRMSPASPGYAAMSPRFG---GGLGG--GPAGGAGAYAPASPAYM-ATSPGMG 250
SP G S G ++ G GG GG G A G GA P P +TS G G
Sbjct: 1773 SPEGNIRSNNSSRGRGGSSRGGSIGSSRGGRGGNIGTAFGRGAPPPPQPPPPPSTSLGRG 1832
Query: 251 -------------YSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGY 382
YSP++P +SP YSP YSPTSPS SP SP Y
Sbjct: 1833 APPPSLFFQASQPYSPTSPFYIPTSPSYSPTSPSYSPTSPSY-----------SPTSPSY 1881
Query: 383 VPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
PTSP+Y+ + + YSP SP+Y+P S Y A + P+Y P S
Sbjct: 1882 SPTSPSYSTSPLYASTSQSYSPVSPSYTPTSLLY-APTIPSYSPVS 1926
Score = 71.6 bits (174), Expect = 3e-11
Identities = 53/150 (35%), Positives = 70/150 (46%), Gaps = 3/150 (2%)
Frame = +2
Query: 47 AAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAY 226
A GR P P P+ P S + A P Y+P SP Y
Sbjct: 1810 AFGRGAPPPPQPPPPPSTSLGRGAPPPSLFFQASQP----------------YSPTSPFY 1853
Query: 227 MATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSP 397
+ TSP YSP++P+ + +SP YSP YSPTSPS + YAS S Y P SP
Sbjct: 1854 IPTSPS--YSPTSPSYSPTSPSYSPTSPSYSPTSPSYST----SPLYAST-SQSYSPVSP 1906
Query: 398 AYARPGTVVAAANVYSPSSPAYSPFSPNYA 487
+Y + +Y+P+ P+YSP SP+YA
Sbjct: 1907 SYT------PTSLLYAPTIPSYSPVSPSYA 1930
Score = 64.3 bits (155), Expect = 5e-09
Identities = 49/145 (33%), Positives = 63/145 (43%), Gaps = 12/145 (8%)
Frame = +2
Query: 68 GRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGM 247
GR P S + + SP SP Y SP +Y+P SP+Y TSP
Sbjct: 1830 GRGAPPPSLFFQASQPYSPTSPFYIPTSP---------------SYSPTSPSYSPTSPS- 1873
Query: 248 GYSPSTPALAVSSPGYSPG---------YSPTSPSVGARG---GPAAGYASPQSPGYVPT 391
YSP++P+ + +SP YS YSP SPS P SP SP Y PT
Sbjct: 1874 -YSPTSPSYSPTSPSYSTSPLYASTSQSYSPVSPSYTPTSLLYAPTIPSYSPVSPSYAPT 1932
Query: 392 SPAYARPGTVVAAANVYSPSSPAYS 466
P + + YSPSSP++S
Sbjct: 1933 KP------SKLPVLTSYSPSSPSFS 1951
Score = 54.3 bits (129), Expect = 5e-06
Identities = 48/167 (28%), Positives = 68/167 (40%), Gaps = 35/167 (20%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGP--AGGAGAYAPASPAYMATSPGMG 250
+P SP +P SP SP Y+ SP + P A + +Y+P SP+Y TS +
Sbjct: 1864 SPSYSPT---SPSYSPTSPSYSPTSPSYSTS----PLYASTSQSYSPVSPSYTPTS--LL 1914
Query: 251 YSPSTPALAVSSPGYSP----------GYSPTSPSVGARGGP---------------AAG 355
Y+P+ P+ + SP Y+P YSP+SPS AG
Sbjct: 1915 YAPTIPSYSPVSPSYAPTKPSKLPVLTSYSPSSPSFSKSKAKEESTLSEINLPSKPMVAG 1974
Query: 356 YA--------SPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPF 472
Y+ S +P PT P + NV+SP+ PA F
Sbjct: 1975 YSRMSTVSFSSTPTPTPTPTPPPLPNAPRPSVSTNVFSPAPPAPQVF 2021
[200][TOP]
>UniRef100_C6F1F2 RNA polymerase II (Fragment) n=1 Tax=Plasmodium cynomolgi
RepID=C6F1F2_9APIC
Length = 232
Score = 75.5 bits (184), Expect = 2e-12
Identities = 52/133 (39%), Positives = 70/133 (52%), Gaps = 3/133 (2%)
Frame = +2
Query: 119 SPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYS 298
S SP Y+ SP++ + + Y+P SP Y+ TSP YSP++P + +SP YS
Sbjct: 50 SVVSPVYSVTSPKY--------SPTSPKYSPTSPKYLPTSPK--YSPTSPKYSPTSPKYS 99
Query: 299 PG---YSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSP 469
P YSPTSP P + SP SP Y PTSP P + + Y+ +SP +SP
Sbjct: 100 PTSPKYSPTSPKYS----PTSPKYSPTSPQYSPTSPVPNNPSS--PHYSPYAIASPKFSP 153
Query: 470 FSPNYAAASSPAY 508
SP Y + SSP Y
Sbjct: 154 TSPAY-SISSPVY 165
Score = 73.9 bits (180), Expect = 6e-12
Identities = 47/107 (43%), Positives = 57/107 (53%), Gaps = 3/107 (2%)
Frame = +2
Query: 203 YAPASPAYMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYASPQS 373
++ SP Y TSP YSP++P + +SP Y SP YSPTSP P + SP S
Sbjct: 49 HSVVSPVYSVTSPK--YSPTSPKYSPTSPKYLPTSPKYSPTSPKYS----PTSPKYSPTS 102
Query: 374 PGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQP 514
P Y PTSP Y+ + YSP+SP YSP SP SSP Y P
Sbjct: 103 PKYSPTSPKYS------PTSPKYSPTSPQYSPTSPVPNNPSSPHYSP 143
Score = 69.3 bits (168), Expect = 2e-10
Identities = 51/134 (38%), Positives = 66/134 (49%), Gaps = 10/134 (7%)
Frame = +2
Query: 107 TPRMSPASPGYAAMSPRFGGGLGGGP--AGGAGAYAPASPAYMATSPGMGYSPSTPALAV 280
+P+ SP SP Y+ SP++ L P + + Y+P SP Y TSP YSP++P +
Sbjct: 60 SPKYSPTSPKYSPTSPKY---LPTSPKYSPTSPKYSPTSPKYSPTSPK--YSPTSPKYSP 114
Query: 281 SSPGYSPG---YSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVV-----AAAN 436
+SP YSP YSPTSP P + SP + PTSPAY+ V A
Sbjct: 115 TSPKYSPTSPQYSPTSPVPNNPSSPHYSPYAIASPKFSPTSPAYSISSPVYDQSGNARNK 174
Query: 437 VYSPSSPAYSPFSP 478
P SPAY SP
Sbjct: 175 SQHPLSPAYILQSP 188
Score = 56.2 bits (134), Expect = 1e-06
Identities = 48/165 (29%), Positives = 71/165 (43%), Gaps = 13/165 (7%)
Frame = +2
Query: 23 SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
SP S T + +P +P+ SP SP Y+ SP++ + +
Sbjct: 67 SPKYSPTSPKYLPTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPKY--------SPTSPK 118
Query: 203 YAPASPAYMATSPGMGYSPSTP---ALAVSSPGYSP---GYSPTSPSVGARGGPAAGYAS 364
Y+P SP Y TSP + +PS+P A++SP +SP YS +SP G
Sbjct: 119 YSPTSPQYSPTSP-VPNNPSSPHYSPYAIASPKFSPTSPAYSISSPVYDQSGNARNKSQH 177
Query: 365 PQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYS-------PFSP 478
P SP Y+ SP + + +V+SP A + PFSP
Sbjct: 178 PLSPAYILQSPVQVKQH--IQDVSVFSPIQQANAEGAQNDDPFSP 220
[201][TOP]
>UniRef100_B4L5V4 GI21801 n=1 Tax=Drosophila mojavensis RepID=B4L5V4_DROMO
Length = 738
Score = 75.5 bits (184), Expect = 2e-12
Identities = 64/192 (33%), Positives = 94/192 (48%), Gaps = 22/192 (11%)
Frame = +2
Query: 11 TASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAA-MSPRFGGGLGGGPA 187
TA +P SSA A + P + A ++ +PA+P Y+A +P + A
Sbjct: 393 TAPAAPSYSSAKAPSYSAPATPSYSAPAAPSYS---APAAPSYSAPAAPSYS-------A 442
Query: 188 GGAGAY-APASPAYMATSPGMGYSPSTPAL-AVSSPGYS----PGYS-PTSPSVGARGGP 346
A +Y APA+P+Y A + +P+ P+ A ++P YS P YS P +PS A P
Sbjct: 443 PAAPSYSAPAAPSYSAPAAPSYSAPAAPSYSAPAAPSYSAPAAPSYSAPAAPSYSAPAAP 502
Query: 347 A------AGYASPQSPGY------VPTSPAYARPGTVVAAANVYSPS-SPAYS-PFSPNY 484
+ Y++P+ P Y P +P Y+ P AA YS S SP+YS P +P Y
Sbjct: 503 SYSAPATQSYSAPKPPSYSAPSYSAPKAPVYSAPSYSAPAAQRYSASKSPSYSAPAAPTY 562
Query: 485 AAASSPAYQPPS 520
+A +PAY PS
Sbjct: 563 SAPKAPAYSAPS 574
Score = 71.6 bits (174), Expect = 3e-11
Identities = 59/184 (32%), Positives = 93/184 (50%), Gaps = 14/184 (7%)
Frame = +2
Query: 11 TASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAG 190
TA +P S+A A + P + A ++ +PA+P Y+A PA
Sbjct: 209 TAPAAPSYSAAKAPNYSAPAAPSYSAPAAPSYS---APAAPSYSA------------PA- 252
Query: 191 GAGAYAPASPAYMATSPGMGYSPSTPAL-AVSSPGYS----PGYS-PTSPSVGARGGP-- 346
AG APA+ +Y A S +P+ P+ A ++P YS P YS P +PS A P
Sbjct: 253 AAGNSAPAAQSYSAPSASSYSAPAAPSYSAPAAPSYSAPAAPSYSAPAAPSYSAPAAPSY 312
Query: 347 ----AAGYASPQSPGY-VPTSPAYARPGTVVAAANVYSPSSPAYS-PFSPNYAAASSPAY 508
AAG ++P +P Y P +P+Y+ P AA + +P++P+YS P +P+Y+A + +Y
Sbjct: 313 SAPAAAGNSAPAAPSYSAPAAPSYSAP----AAPSYSAPAAPSYSAPAAPSYSAPKASSY 368
Query: 509 QPPS 520
P+
Sbjct: 369 SAPA 372
Score = 70.9 bits (172), Expect = 5e-11
Identities = 63/197 (31%), Positives = 101/197 (51%), Gaps = 26/197 (13%)
Frame = +2
Query: 8 ATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMS-PASPGYAA-MSPRFGG-GLGG 178
A S+S +S+ +A A S + P S PA+P Y+A +P + G
Sbjct: 260 AAQSYSAPSASSYSAPAAPSYSAPAAPSYSAPAAPSYSAPAAPSYSAPAAPSYSAPAAAG 319
Query: 179 GPAGGAGAY-APASPAYMATSPGMGYSPSTPAL-AVSSPGYS------------PGYS-P 313
A A +Y APA+P+Y A + +P+ P+ A ++P YS P YS P
Sbjct: 320 NSAPAAPSYSAPAAPSYSAPAAPSYSAPAAPSYSAPAAPSYSAPKASSYSAPAAPSYSAP 379
Query: 314 TSPSVGARG-----GPAA-GYASPQSPGY-VPTSPAYARPGTVVAAANVYSPSSPAYS-P 469
+PS A+G PAA Y+S ++P Y P +P+Y+ P AA + +P++P+YS P
Sbjct: 380 KAPSYAAQGVSSYTAPAAPSYSSAKAPSYSAPATPSYSAP----AAPSYSAPAAPSYSAP 435
Query: 470 FSPNYAAASSPAYQPPS 520
+P+Y+A ++P+Y P+
Sbjct: 436 AAPSYSAPAAPSYSAPA 452
Score = 69.7 bits (169), Expect = 1e-10
Identities = 49/153 (32%), Positives = 82/153 (53%), Gaps = 19/153 (12%)
Frame = +2
Query: 119 SPASPGYAAMSPRFGGGLGGGPA----GGAGAYAPASPAYMATSPGMGYSPSTPAL-AVS 283
+PA+P Y+A +P+ G P+ AG APA+ +Y A S +P+ P+ A +
Sbjct: 106 APAAPNYSAPAPQ-GYSAPAAPSYSAPAAAGNSAPAAQSYSAPSASSYSAPAAPSYSAPA 164
Query: 284 SPGYSPGYSPTSPSVGARGGPAAGYASPQSPGY-VPTSPAYARPG------------TVV 424
+P YS +P +PS A A+ Y++P +P Y P +P+YA G +
Sbjct: 165 APSYS---APAAPSYSA--PKASSYSAPAAPSYSAPKAPSYAAQGVSSYTAPAAPSYSAA 219
Query: 425 AAANVYSPSSPAYS-PFSPNYAAASSPAYQPPS 520
A N +P++P+YS P +P+Y+A ++P+Y P+
Sbjct: 220 KAPNYSAPAAPSYSAPAAPSYSAPAAPSYSAPA 252
Score = 69.3 bits (168), Expect = 2e-10
Identities = 56/188 (29%), Positives = 92/188 (48%), Gaps = 18/188 (9%)
Frame = +2
Query: 11 TASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAG 190
+A +P S+ AAG + P + A ++ +PA+P Y+A PA
Sbjct: 121 SAPAAPSYSAPAAAGNSAPAAQSYSAPSASSYS---APAAPSYSA------------PAA 165
Query: 191 GAGAYAPASPAYMATSPGMGYSPSTP------ALAVSSPGYSPGYSPTSPSVGARGGP-- 346
+ + APA+P+Y A +P+ P A + ++ G S +P +PS A P
Sbjct: 166 PSYS-APAAPSYSAPKASSYSAPAAPSYSAPKAPSYAAQGVSSYTAPAAPSYSAAKAPNY 224
Query: 347 ----AAGYASPQSPGY-VPTSPAYARP---GTVVAAANVYS-PSSPAYS-PFSPNYAAAS 496
A Y++P +P Y P +P+Y+ P G AA YS PS+ +YS P +P+Y+A +
Sbjct: 225 SAPAAPSYSAPAAPSYSAPAAPSYSAPAAAGNSAPAAQSYSAPSASSYSAPAAPSYSAPA 284
Query: 497 SPAYQPPS 520
+P+Y P+
Sbjct: 285 APSYSAPA 292
Score = 62.0 bits (149), Expect = 2e-08
Identities = 50/142 (35%), Positives = 75/142 (52%), Gaps = 9/142 (6%)
Frame = +2
Query: 122 PASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSP------STPALAVS 283
PA+P YAA + P G + APA+P Y A +P GYS S PA A +
Sbjct: 83 PAAPTYAAPA----AASYSAPKGPVYS-APAAPNYSAPAP-QGYSAPAAPSYSAPAAAGN 136
Query: 284 SPGYSPGYSPTSPSVGARGGPAA-GYASPQSPGY-VPTSPAYARPGTVVAAANVYSPSSP 457
S + YS +PS + PAA Y++P +P Y P +P+Y+ P A++ +P++P
Sbjct: 137 SAPAAQSYS--APSASSYSAPAAPSYSAPAAPSYSAPAAPSYSAP----KASSYSAPAAP 190
Query: 458 AYS-PFSPNYAAASSPAYQPPS 520
+YS P +P+YAA +Y P+
Sbjct: 191 SYSAPKAPSYAAQGVSSYTAPA 212
[202][TOP]
>UniRef100_UPI0001792AA2 PREDICTED: hypothetical protein n=1 Tax=Acyrthosiphon pisum
RepID=UPI0001792AA2
Length = 649
Score = 74.3 bits (181), Expect = 5e-12
Identities = 57/195 (29%), Positives = 87/195 (44%), Gaps = 27/195 (13%)
Frame = +2
Query: 17 SFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGL----GGGP 184
S SP ++ + S G +P +SP Y SP +GG G P
Sbjct: 357 SSSPSFGGGSSSYGGSSSSYGGSSSSYGSSSPSYGGSSPSYGGSSPSYGGSSPSYGGNSP 416
Query: 185 A--GGAGAYAPASPAYMATSPGMG------------YSPSTPALAVSSPGY---SPGYSP 313
+ G + +Y +SP+Y +S G Y S+P+ SSP Y SP Y
Sbjct: 417 SYGGSSHSYGGSSPSYGGSSHSYGGSSPSYGGSSHSYGGSSPSYGGSSPSYGGSSPSYGG 476
Query: 314 TSPSVG----ARGGPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPN 481
+SPS G + GG ++ Y SP Y +SP+Y ++++Y+ +SP+YS S +
Sbjct: 477 SSPSYGGSSPSYGGSSSSYGG-SSPSYGGSSPSYGGSSPSYGSSSLYAGNSPSYSGSSSS 535
Query: 482 YAAAS--SPAYQPPS 520
Y + S P+Y PS
Sbjct: 536 YGSPSPYKPSYGSPS 550
Score = 63.5 bits (153), Expect = 8e-09
Identities = 51/147 (34%), Positives = 72/147 (48%), Gaps = 7/147 (4%)
Frame = +2
Query: 89 SPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTP 268
S G+ + SP P + SP FGGG G + +Y +S +Y ++SP Y S+P
Sbjct: 341 SSYGQSSSYSSP--PQKYSSSPSFGGG-SSSYGGSSSSYGGSSSSYGSSSP--SYGGSSP 395
Query: 269 ALAVSSPGY---SPGYSPTSPSVG----ARGGPAAGYASPQSPGYVPTSPAYARPGTVVA 427
+ SSP Y SP Y SPS G + GG + Y S Y +SP+Y
Sbjct: 396 SYGGSSPSYGGSSPSYGGNSPSYGGSSHSYGGSSPSYGG-SSHSYGGSSPSYG------G 448
Query: 428 AANVYSPSSPAYSPFSPNYAAASSPAY 508
+++ Y SSP+Y SP+Y SSP+Y
Sbjct: 449 SSHSYGGSSPSYGGSSPSY-GGSSPSY 474
Score = 62.8 bits (151), Expect = 1e-08
Identities = 47/157 (29%), Positives = 71/157 (45%), Gaps = 18/157 (11%)
Frame = +2
Query: 83 GRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMG---- 250
G+S + P+ +SP + S +GG G + +Y +SP+Y +SP G
Sbjct: 344 GQSSSYSSPPQKYSSSPSFGGGSSSYGGS-SSSYGGSSSSYGSSSPSYGGSSPSYGGSSP 402
Query: 251 -YSPSTPALAVSSPGY---SPGYSPTSPSVG----ARGGPAAGYASP------QSPGYVP 388
Y S+P+ +SP Y S Y +SPS G + GG + Y SP Y
Sbjct: 403 SYGGSSPSYGGNSPSYGGSSHSYGGSSPSYGGSSHSYGGSSPSYGGSSHSYGGSSPSYGG 462
Query: 389 TSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASS 499
+SP+Y ++ Y SSP+Y SP+Y +SS
Sbjct: 463 SSPSYG------GSSPSYGGSSPSYGGSSPSYGGSSS 493
Score = 60.8 bits (146), Expect = 5e-08
Identities = 51/145 (35%), Positives = 72/145 (49%), Gaps = 5/145 (3%)
Frame = +2
Query: 83 GRSPA-GRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSP 259
G SP+ G +P +SP Y SP +GG G + +Y +SP+Y +SP Y
Sbjct: 455 GSSPSYGGSSPSYGGSSPSYGGSSPSYGGS-SPSYGGSSSSYGGSSPSYGGSSP--SYGG 511
Query: 260 STPALAVSS--PGYSPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVAAA 433
S+P+ SS G SP YS +S S G+ Y SP SP +S +Y P + +
Sbjct: 512 SSPSYGSSSLYAGNSPSYSGSSSSYGSPSPYKPSYGSP-SP--YKSSSSYKAPYS-SSGP 567
Query: 434 NVYSPSSPAYSPFS--PNYAAASSP 502
+ SPSS SP+S +Y +SSP
Sbjct: 568 SFESPSSYKLSPYSGGSSYEGSSSP 592
[203][TOP]
>UniRef100_C6F0A4 RNA polymerase II (Fragment) n=2 Tax=Plasmodium (Laverania)
RepID=C6F0A4_PLAFA
Length = 202
Score = 73.9 bits (180), Expect = 6e-12
Identities = 50/130 (38%), Positives = 62/130 (47%), Gaps = 6/130 (4%)
Frame = +2
Query: 107 TPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSS 286
+P+ SP SP Y+ SP+ Y+P SP Y TSP YSP++P + +S
Sbjct: 44 SPKYSPTSPKYSPTSPK---------------YSPTSPKYSPTSPK--YSPTSPKYSPTS 86
Query: 287 PGYSPG---YSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVV---AAANVYSP 448
P YSP YSPTSP P S SP + PTSPAY+ V N + P
Sbjct: 87 PKYSPTSPKYSPTSPVAQNIASPNYSPYSITSPKFSPTSPAYSISSPVYDKSGVVNAHQP 146
Query: 449 SSPAYSPFSP 478
SPAY SP
Sbjct: 147 MSPAYILQSP 156
Score = 70.9 bits (172), Expect = 5e-11
Identities = 49/110 (44%), Positives = 60/110 (54%), Gaps = 8/110 (7%)
Frame = +2
Query: 203 YAPASPAYMATSPGMGYSPSTPALAVSSPGYSPG---YSPTSPSVGARGGPAAGYASPQS 373
Y SP Y TSP YSP++P + +SP YSP YSPTSP P + SP S
Sbjct: 33 YNVMSPVYSVTSPK--YSPTSPKYSPTSPKYSPTSPKYSPTSPKYS----PTSPKYSPTS 86
Query: 374 PGYVPTSPAYARPGTV---VAAANV--YSPSSPAYSPFSPNYAAASSPAY 508
P Y PTSP Y+ V +A+ N YS +SP +SP SP Y + SSP Y
Sbjct: 87 PKYSPTSPKYSPTSPVAQNIASPNYSPYSITSPKFSPTSPAY-SISSPVY 135
Score = 67.8 bits (164), Expect = 4e-10
Identities = 49/125 (39%), Positives = 59/125 (47%), Gaps = 19/125 (15%)
Frame = +2
Query: 203 YAPASPAYMA-------TSP---------GMGYSPSTPALAVSSPGYSPG---YSPTSPS 325
Y+P SP Y A TSP Y+ +P +V+SP YSP YSPTSP
Sbjct: 1 YSPTSPTYNANNAYYSPTSPKNQNDQMNVNSQYNVMSPVYSVTSPKYSPTSPKYSPTSPK 60
Query: 326 VGARGGPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPA 505
P + SP SP Y PTSP Y+ + YSP+SP YSP SP +SP
Sbjct: 61 YS----PTSPKYSPTSPKYSPTSPKYS------PTSPKYSPTSPKYSPTSPVAQNIASPN 110
Query: 506 YQPPS 520
Y P S
Sbjct: 111 YSPYS 115
[204][TOP]
>UniRef100_P14248 DNA-directed RNA polymerase II subunit RPB1 n=1 Tax=Plasmodium
falciparum CDC/Honduras RepID=RPB1_PLAFD
Length = 2452
Score = 73.9 bits (180), Expect = 6e-12
Identities = 50/130 (38%), Positives = 62/130 (47%), Gaps = 6/130 (4%)
Frame = +2
Query: 107 TPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSS 286
+P+ SP SP Y+ SP+ Y+P SP Y TSP YSP++P + +S
Sbjct: 2294 SPKYSPTSPKYSPTSPK---------------YSPTSPKYSPTSPK--YSPTSPKYSPTS 2336
Query: 287 PGYSPG---YSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVV---AAANVYSP 448
P YSP YSPTSP P S SP + PTSPAY+ V N + P
Sbjct: 2337 PKYSPTSPKYSPTSPVAQNIASPNYSPYSITSPKFSPTSPAYSISSPVYDKSGVVNAHQP 2396
Query: 449 SSPAYSPFSP 478
SPAY SP
Sbjct: 2397 MSPAYILQSP 2406
Score = 73.2 bits (178), Expect = 1e-11
Identities = 56/146 (38%), Positives = 71/146 (48%), Gaps = 11/146 (7%)
Frame = +2
Query: 104 FTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA---YAPASPAYMATSPGMGYSPSTPAL 274
++P SP SP Y A + + Y SP Y TSP YSP++P
Sbjct: 2247 YSPSYSPTSPTYNANNAYYSPTSPKNQNDQMNVNSQYNVMSPVYSVTSPK--YSPTSPKY 2304
Query: 275 AVSSPGYSPG---YSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTV---VAAAN 436
+ +SP YSP YSPTSP P + SP SP Y PTSP Y+ V +A+ N
Sbjct: 2305 SPTSPKYSPTSPKYSPTSPKYS----PTSPKYSPTSPKYSPTSPKYSPTSPVAQNIASPN 2360
Query: 437 V--YSPSSPAYSPFSPNYAAASSPAY 508
YS +SP +SP SP Y + SSP Y
Sbjct: 2361 YSPYSITSPKFSPTSPAY-SISSPVY 2385
[205][TOP]
>UniRef100_B3MYU2 GF22208 n=1 Tax=Drosophila ananassae RepID=B3MYU2_DROAN
Length = 563
Score = 73.6 bits (179), Expect = 8e-12
Identities = 55/178 (30%), Positives = 92/178 (51%), Gaps = 9/178 (5%)
Frame = +2
Query: 11 TASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAA-MSPRFGGGLGGGPA 187
+A +P S+ A + P + A ++ +PA+P Y+A +P + PA
Sbjct: 118 SAPAAPSYSAPAAPSYSAPAAPSYSAPAAPSYS---APAAPSYSAPAAPSYSA-----PA 169
Query: 188 GGAGAYAPASPAYMATSPGMGYSPSTPAL-AVSSPGYS----PGYS-PTSPSVGARGGPA 349
APA+P+Y A + +P+ P+ A ++P YS P YS P +PS A A
Sbjct: 170 AAPSYSAPAAPSYSAPAAPSYSAPAAPSYSAPAAPSYSAPAAPSYSAPAAPSYSAPAAAA 229
Query: 350 AGYASPQSPGY-VPTSPAYARPGTVVAAANVYSPSSPAYS-PFSPNYAAASSPAYQPP 517
Y++P S GY P + +Y+ P AA + +P++P+YS P +P+Y+A ++P+Y P
Sbjct: 230 PSYSAPASSGYSAPKASSYSAP----AAPSYSAPAAPSYSAPAAPSYSAPAAPSYSAP 283
Score = 72.8 bits (177), Expect = 1e-11
Identities = 55/177 (31%), Positives = 93/177 (52%), Gaps = 5/177 (2%)
Frame = +2
Query: 5 NATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGP 184
N+ AS+S + A P +PA +PA+P Y+A + G
Sbjct: 57 NSQASYSAPKAQGGYAAPVAPAPAPSYSAPAAPAPSYSAPAAPSYSAPAS------SGYS 110
Query: 185 AGGAGAY-APASPAYMATSPGMGYSPSTPAL-AVSSPGYSPGYSPTSPSVGARGGPAAGY 358
A A +Y APA+P+Y A + +P+ P+ A ++P YS +P +PS A P+ Y
Sbjct: 111 APKASSYSAPAAPSYSAPAAPSYSAPAAPSYSAPAAPSYS---APAAPSYSAPAAPS--Y 165
Query: 359 ASPQS-PGY-VPTSPAYARPGTVVAAANVYSPSSPAYS-PFSPNYAAASSPAYQPPS 520
++P + P Y P +P+Y+ P AA + +P++P+YS P +P+Y+A ++P+Y P+
Sbjct: 166 SAPAAAPSYSAPAAPSYSAP----AAPSYSAPAAPSYSAPAAPSYSAPAAPSYSAPA 218
Score = 72.4 bits (176), Expect = 2e-11
Identities = 59/190 (31%), Positives = 95/190 (50%), Gaps = 20/190 (10%)
Frame = +2
Query: 11 TASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGP-- 184
+A +P S+ A + P + A ++ +PA+P Y+A + P
Sbjct: 257 SAPAAPSYSAPAAPSYSAPAAPSYSAPKAPSYS---APAAPSYSAPAAPSYSAPAASPSY 313
Query: 185 -AGGAGAY-APASPAYMATSPGMGYSPSTPAL-AVSSPGYS----PGYS-PTSPSVGARG 340
A A AY APA+P+Y A + +P+ P+ A ++P YS P YS P +PS A
Sbjct: 314 SASAAPAYSAPAAPSYSAPAAPSYSAPAAPSYSAPAAPSYSAPAAPSYSAPAAPSYSAPA 373
Query: 341 GP------AAGYASPQSPGY-VPTSPAYARPGTVVAAANVYSPSSPAYS---PFSPNYAA 490
P A Y++P +P Y P +PAY+ P AA + +P++P+YS P S +Y+A
Sbjct: 374 APSYSAPAAPAYSAPAAPSYSAPAAPAYSAP-KAAAAPSYSAPAAPSYSAPAPSSSSYSA 432
Query: 491 ASSPAYQPPS 520
++P+Y P+
Sbjct: 433 PAAPSYSAPA 442
Score = 69.3 bits (168), Expect = 2e-10
Identities = 54/175 (30%), Positives = 93/175 (53%), Gaps = 5/175 (2%)
Frame = +2
Query: 11 TASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGG-PA 187
+A +P S+ A + P + A ++ +P+ AA +P + G A
Sbjct: 183 SAPAAPSYSAPAAPSYSAPAAPSYSAPAAPSYSAPAAPSYSAPAAAAPSYSAPASSGYSA 242
Query: 188 GGAGAY-APASPAYMATSPGMGYSPSTPAL-AVSSPGYSPGYSPTSPSVGARGGPAAGYA 361
A +Y APA+P+Y A + +P+ P+ A ++P YS +P +PS A P+ Y+
Sbjct: 243 PKASSYSAPAAPSYSAPAAPSYSAPAAPSYSAPAAPSYS---APKAPSYSAPAAPS--YS 297
Query: 362 SPQSPGYVPTSPAYARPGTVVAAANVYS-PSSPAYS-PFSPNYAAASSPAYQPPS 520
+P +P Y ++PA A P +AA YS P++P+YS P +P+Y+A ++P+Y P+
Sbjct: 298 APAAPSY--SAPA-ASPSYSASAAPAYSAPAAPSYSAPAAPSYSAPAAPSYSAPA 349
Score = 65.1 bits (157), Expect = 3e-09
Identities = 59/185 (31%), Positives = 96/185 (51%), Gaps = 15/185 (8%)
Frame = +2
Query: 11 TASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAA-MSPRFGGGLGGG-P 184
+AS +P S+ A + P + A ++ +PA+P Y+A +P +
Sbjct: 314 SASAAPAYSAPAAPSYSAPAAPSYSAPAAPSYS---APAAPSYSAPAAPSYSAPAAPSYS 370
Query: 185 AGGAGAY-APASPAYMATSPGMGYSPSTPAL----AVSSPGYS----PGYSPTSPSVGAR 337
A A +Y APA+PAY A + +P+ PA A ++P YS P YS +PS +
Sbjct: 371 APAAPSYSAPAAPAYSAPAAPSYSAPAAPAYSAPKAAAAPSYSAPAAPSYSAPAPSSSSY 430
Query: 338 GGPAA-GYASPQSPGYVPTSPAYARPGTVVAAANVYS-PSSPAYS-PFSPNYAA-ASSPA 505
PAA Y++P +P Y ++PA + A++ YS P+S +YS P + +Y+A +SSP+
Sbjct: 431 SAPAAPSYSAPAAPPY--SAPASSSSSYSAPASSSYSAPASSSYSAPKASSYSAPSSSPS 488
Query: 506 YQPPS 520
Y P+
Sbjct: 489 YSAPA 493
Score = 63.5 bits (153), Expect = 8e-09
Identities = 48/156 (30%), Positives = 77/156 (49%), Gaps = 18/156 (11%)
Frame = +2
Query: 107 TPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSP---------GMGYSP 259
+P + + Y+A + G PA APA+PA ++P GYS
Sbjct: 52 SPVVYNSQASYSAPKAQGGYAAPVAPAPAPSYSAPAAPAPSYSAPAAPSYSAPASSGYSA 111
Query: 260 ------STPALAVSSPGYSPGYS-PTSPSVGARGGPAAGYASPQSPGY-VPTSPAYARPG 415
S PA S +P YS P +PS A P+ Y++P +P Y P +P+Y+ P
Sbjct: 112 PKASSYSAPAAPSYSAPAAPSYSAPAAPSYSAPAAPS--YSAPAAPSYSAPAAPSYSAP- 168
Query: 416 TVVAAANVYSPSSPAYS-PFSPNYAAASSPAYQPPS 520
AA + +P++P+YS P +P+Y+A ++P+Y P+
Sbjct: 169 --AAAPSYSAPAAPSYSAPAAPSYSAPAAPSYSAPA 202
Score = 62.8 bits (151), Expect = 1e-08
Identities = 52/154 (33%), Positives = 77/154 (50%), Gaps = 20/154 (12%)
Frame = +2
Query: 119 SPASPGYAAMSPRFGGGLGGGPAGGAGAY----APASPAYMATSPGMGYSPSTPAL-AVS 283
+PA+P Y+A + PA A A APA+P+Y A + +P+ P+ A +
Sbjct: 298 APAAPSYSAPAASPSYSASAAPAYSAPAAPSYSAPAAPSYSAPAAPSYSAPAAPSYSAPA 357
Query: 284 SPGYS----PGYSP------TSPSVGARGGPAA-GYASPQSPGYVPTSPAYARPGTVVAA 430
+P YS P YS ++P+ A PAA Y++P +P Y A A P A
Sbjct: 358 APSYSAPAAPSYSAPAAPSYSAPAAPAYSAPAAPSYSAPAAPAY-SAPKAAAAPSYSAPA 416
Query: 431 ANVYS---PSSPAYS-PFSPNYAAASSPAYQPPS 520
A YS PSS +YS P +P+Y+A ++P Y P+
Sbjct: 417 APSYSAPAPSSSSYSAPAAPSYSAPAAPPYSAPA 450
Score = 55.1 bits (131), Expect = 3e-06
Identities = 53/174 (30%), Positives = 83/174 (47%), Gaps = 3/174 (1%)
Frame = +2
Query: 11 TASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAG 190
+A +P S+ A + P + A ++ +PA+P Y+A + A
Sbjct: 354 SAPAAPSYSAPAAPSYSAPAAPSYSAPAAPAYS---APAAPSYSAPA---APAYSAPKAA 407
Query: 191 GAGAY-APASPAYMATSPGMGYSPSTPALAVSSPGYSPGYSPTSPSVGARGGPAAGYASP 367
A +Y APA+P+Y A +P S S PA +P YS +P +P A ++ Y++P
Sbjct: 408 AAPSYSAPAAPSYSAPAPSSS-SYSAPA----APSYS---APAAPPYSAPASSSSSYSAP 459
Query: 368 QSPGY-VPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAA-ASSPAYQPPSR 523
S Y P S +Y+ P A++ +PSS SP+Y+A ASS Y PS+
Sbjct: 460 ASSSYSAPASSSYSAP----KASSYSAPSS------SPSYSAPASSSGYSAPSK 503
[206][TOP]
>UniRef100_B9PZ84 Putative uncharacterized protein n=1 Tax=Toxoplasma gondii GT1
RepID=B9PZ84_TOXGO
Length = 487
Score = 73.2 bits (178), Expect = 1e-11
Identities = 51/177 (28%), Positives = 67/177 (37%), Gaps = 14/177 (7%)
Frame = +2
Query: 26 PIMSSADAAGRATPGR--MTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAG 199
P + +DA ATP + TP + P +PA PG P G
Sbjct: 253 PPAAKSDAKPGATPAKPGATPAKPGVTPAKPDATPAKPGATPAKPGATPAKPGATPAKPA 312
Query: 200 AYAPASPAYMATSPGMGYSPSTPALAVSSPGYS----PGYSPTSPSVGARGGPA-----A 352
AP P PG+G +P+ P L PG S PG +P P GA P
Sbjct: 313 LSAPVKPGSTPVKPGVG-APAKPGLTPVKPGLSTPAKPGLTPVKPGAGAPAKPGLTPVKP 371
Query: 353 GYASPQSPGYVPTSP---AYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQP 514
G +P PG P P A A+PG + +P+ P +P P A + P P
Sbjct: 372 GVGAPAKPGLTPVKPGAGAPAKPGLTPVKPGLSTPAKPGLTPVKPGAGAPAKPGLTP 428
Score = 57.8 bits (138), Expect = 5e-07
Identities = 46/169 (27%), Positives = 67/169 (39%), Gaps = 9/169 (5%)
Frame = +2
Query: 35 SSADAAGRATPG-----RMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAG 199
S D A + PG PG +PAG P PG A ++ G G PA +
Sbjct: 202 SGPDLAAKKPPGGGDSASGKPGGAPAGLVKKPDLP-KPG-AVVAKTDTGAKPGPPAAKSD 259
Query: 200 AYAPASPAYMATSPGM-GYSPSTPALAVSSPGYSPGYSPTSPSVGARGGPAAGYASPQSP 376
A A+PA +P G +P+ P + PG +P +P+ ++P P
Sbjct: 260 AKPGATPAKPGATPAKPGVTPAKPDATPAKPGATPAKPGATPAKPGATPAKPALSAPVKP 319
Query: 377 GYVPTSP---AYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQP 514
G P P A A+PG + +P+ P +P P A + P P
Sbjct: 320 GSTPVKPGVGAPAKPGLTPVKPGLSTPAKPGLTPVKPGAGAPAKPGLTP 368
Score = 53.5 bits (127), Expect = 9e-06
Identities = 48/151 (31%), Positives = 60/151 (39%), Gaps = 12/151 (7%)
Frame = +2
Query: 53 GRATPGR--MTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAG-GAGAYAPASPA 223
G +TP + +TP + AG +PA PG + P G G GA APA P
Sbjct: 342 GLSTPAKPGLTPVKPGAG------APAKPGLTPVKPGVGAPAKPGLTPVKPGAGAPAKPG 395
Query: 224 YMATSPGMGYSPSTPALAVSSPG----YSPGYSPTSPSVGARGGPA-----AGYASPQSP 376
PG+ +P+ P L PG PG +P P GA P G +P P
Sbjct: 396 LTPVKPGLS-TPAKPGLTPVKPGAGAPAKPGLTPVKPGAGAPAKPGLTPVKPGAGAPAKP 454
Query: 377 GYVPTSPAYARPGTVVAAANVYSPSSPAYSP 469
P P +PG AAA V PA P
Sbjct: 455 --TPVKPPGPKPG-APAAAKVDLKGKPAIKP 482
[207][TOP]
>UniRef100_B4JMW7 GH24704 n=1 Tax=Drosophila grimshawi RepID=B4JMW7_DROGR
Length = 692
Score = 73.2 bits (178), Expect = 1e-11
Identities = 54/180 (30%), Positives = 94/180 (52%), Gaps = 9/180 (5%)
Frame = +2
Query: 11 TASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAA-MSPRFGGGLGGGPA 187
+A +P S+ A + P + A ++ +PA+P Y+A +P + A
Sbjct: 166 SAPAAPSYSAPAAPSYSAPAAPSYSAPAAPSYS---APAAPSYSAPAAPSYS-------A 215
Query: 188 GGAGAY-APASPAYMATSPGMGYSPSTPALAVSSPGYS-PGYSPTSPSVGARGGPAAGYA 361
A +Y APA+P+Y A +P+ A ++P YS P S ++P+ + PA Y+
Sbjct: 216 PAAPSYSAPAAPSYSAPKGPSYSAPAQSYSAPAAPSYSEPAQSYSAPASPSYSAPAQSYS 275
Query: 362 SPQSPGY-VPTSPAYARPG----TVVAAANVYSPSSPAYS-PFSPNYAAASSPAYQPPSR 523
SP SP Y P +P+Y+ P + AA + +P++P+YS P P+Y+A ++P+Y P++
Sbjct: 276 SPASPSYSAPAAPSYSAPAAPSYSAPAAPSYSAPAAPSYSAPKGPSYSAPAAPSYSAPAQ 335
Score = 73.2 bits (178), Expect = 1e-11
Identities = 62/190 (32%), Positives = 96/190 (50%), Gaps = 19/190 (10%)
Frame = +2
Query: 8 ATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMS-PASPGYAA-MSPRFGGGLGGG 181
A S+S S A A+P P +S + +P S PA+P Y+A +P +
Sbjct: 248 AAPSYSEPAQSYSAP--ASPSYSAPAQSYSSPASPSYSAPAAPSYSAPAAPSYS------ 299
Query: 182 PAGGAGAY-APASPAYMATSPGMGYSPSTPALAVSSPGYS----PGYS-PTSPSVGARGG 343
A A +Y APA+P+Y A +P+ P+ + + YS P YS P +PS A
Sbjct: 300 -APAAPSYSAPAAPSYSAPKGPSYSAPAAPSYSAPAQSYSAPAAPSYSAPAAPSYSAPAA 358
Query: 344 P------AAGYASPQSPGY-VPTSPAYARPG--TVVAAANVYS-PSSPAYS-PFSPNYAA 490
P A Y++P +P Y P P+Y+ P + A A YS P++P+YS P +P+Y+A
Sbjct: 359 PSYSAPAAPSYSAPAAPSYSAPKGPSYSAPAAPSYSAPAQSYSAPAAPSYSAPAAPSYSA 418
Query: 491 ASSPAYQPPS 520
++P+Y P+
Sbjct: 419 PAAPSYSAPA 428
Score = 72.4 bits (176), Expect = 2e-11
Identities = 60/184 (32%), Positives = 95/184 (51%), Gaps = 14/184 (7%)
Frame = +2
Query: 11 TASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAA-MSPRFGGGLGGGPA 187
+A +P S+ A + P + A ++ +PA+P Y+A +P + G +
Sbjct: 182 SAPAAPSYSAPAAPSYSAPAAPSYSAPAAPSYS---APAAPSYSAPAAPSYSAPKGPSYS 238
Query: 188 GGAGAY-APASPAYMATSPGMGYSP------STPALAVSSPGYSPGYS-PTSPSVGARGG 343
A +Y APA+P+Y + P YS S PA + SSP SP YS P +PS A
Sbjct: 239 APAQSYSAPAAPSY--SEPAQSYSAPASPSYSAPAQSYSSPA-SPSYSAPAAPSYSAPAA 295
Query: 344 PAAGYASPQSPGY-VPTSPAYARP-GTVVAAANVYSPSSPAYS---PFSPNYAAASSPAY 508
P+ Y++P +P Y P +P+Y+ P G +A S S+PA S P +P+Y+A ++P+Y
Sbjct: 296 PS--YSAPAAPSYSAPAAPSYSAPKGPSYSAPAAPSYSAPAQSYSAPAAPSYSAPAAPSY 353
Query: 509 QPPS 520
P+
Sbjct: 354 SAPA 357
Score = 72.4 bits (176), Expect = 2e-11
Identities = 50/147 (34%), Positives = 79/147 (53%), Gaps = 12/147 (8%)
Frame = +2
Query: 119 SPASPGYAA-MSPRFGGGLGGGPAGGAGAY-APASPAYMATSPGMGYS-PSTPALAVSSP 289
+PA+P Y+A P + + A +Y APA+P+Y A S G YS P+ P+ + +
Sbjct: 465 APAAPSYSAPKGPSYSAPAAPSYSAPAQSYSAPAAPSYSA-SKGPSYSAPAAPSYSAPAQ 523
Query: 290 GYS----PGYSPTSPSVGARGGPAAGYASPQSPGY-VPTSPAYARPG---TVVAAANVYS 445
YS P YS + S A P+ Y++P +P Y P P+Y+ P + AA + +
Sbjct: 524 SYSAPAAPSYSAPAQSYSAPAAPS--YSAPAAPSYSAPKGPSYSAPAQSYSAPAAPSYSA 581
Query: 446 PSSPAYS-PFSPNYAAASSPAYQPPSR 523
P +P YS P +P+Y+A ++P+Y P R
Sbjct: 582 PKAPVYSVPVAPSYSAPAAPSYAAPKR 608
Score = 71.6 bits (174), Expect = 3e-11
Identities = 57/174 (32%), Positives = 88/174 (50%), Gaps = 19/174 (10%)
Frame = +2
Query: 59 ATPGRMTPGRSPAGRFTPRMS-PASPGYAA-MSPRFGGGLGGGPAGGAGAY-APASPAYM 229
A P P +S + P S PA+P Y+A +P + A A +Y APA+P+Y
Sbjct: 326 AAPSYSAPAQSYSAPAAPSYSAPAAPSYSAPAAPSYS-------APAAPSYSAPAAPSYS 378
Query: 230 ATSPGMGYSPSTPALAVSSPGYS----PGYS-PTSPSVGARGGP------AAGYASPQSP 376
A +P+ P+ + + YS P YS P +PS A P A Y++P +P
Sbjct: 379 APKGPSYSAPAAPSYSAPAQSYSAPAAPSYSAPAAPSYSAPAAPSYSAPAAPSYSAPAAP 438
Query: 377 GY-VPTSPAYARPG--TVVAAANVYS-PSSPAYS-PFSPNYAAASSPAYQPPSR 523
Y P P+Y+ P + A A YS P++P+YS P P+Y+A ++P+Y P++
Sbjct: 439 SYSAPKGPSYSAPADPSYSAPAQSYSAPAAPSYSAPKGPSYSAPAAPSYSAPAQ 492
Score = 71.2 bits (173), Expect = 4e-11
Identities = 60/192 (31%), Positives = 97/192 (50%), Gaps = 22/192 (11%)
Frame = +2
Query: 11 TASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAA-MSPRFGGGLGGGPA 187
+A +P S+ A + P + A ++ +PA+P Y+A +P + A
Sbjct: 126 SAPAAPSYSAPAAPSYSAPAAPSYSAPAAPSYS---APAAPSYSAPAAPSYS-------A 175
Query: 188 GGAGAY-APASPAYMATSPGMGYSPSTPAL-AVSSPGYS----PGYS-PTSPSVGARGGP 346
A +Y APA+P+Y A + +P+ P+ A ++P YS P YS P +PS A GP
Sbjct: 176 PAAPSYSAPAAPSYSAPAAPSYSAPAAPSYSAPAAPSYSAPAAPSYSAPAAPSYSAPKGP 235
Query: 347 -----AAGYASPQSPGY--------VPTSPAYARPGTVVAAANVYSPSSPAYS-PFSPNY 484
A Y++P +P Y P SP+Y+ P A + SP+SP+YS P +P+Y
Sbjct: 236 SYSAPAQSYSAPAAPSYSEPAQSYSAPASPSYSAP-----AQSYSSPASPSYSAPAAPSY 290
Query: 485 AAASSPAYQPPS 520
+A ++P+Y P+
Sbjct: 291 SAPAAPSYSAPA 302
Score = 68.6 bits (166), Expect = 3e-10
Identities = 56/180 (31%), Positives = 89/180 (49%), Gaps = 10/180 (5%)
Frame = +2
Query: 11 TASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAA-MSPRFGGGLGGGPA 187
+A +P S+ A + P + A ++ +P P Y+A +P + A
Sbjct: 346 SAPAAPSYSAPAAPSYSAPAAPSYSAPAAPSYS---APKGPSYSAPAAPSYSAPAQSYSA 402
Query: 188 GGAGAY-APASPAYMATSPGMGYSPSTPAL-AVSSPGYS----PGYS-PTSPSVGARGGP 346
A +Y APA+P+Y A + +P+ P+ A ++P YS P YS P PS A P
Sbjct: 403 PAAPSYSAPAAPSYSAPAAPSYSAPAAPSYSAPAAPSYSAPKGPSYSAPADPSYSA---P 459
Query: 347 AAGYASPQSPGY-VPTSPAYARPGTVVAAANVYSPSSPAYS-PFSPNYAAASSPAYQPPS 520
A Y++P +P Y P P+Y+ P AA YS + +YS P +P+Y+A+ P+Y P+
Sbjct: 460 AQSYSAPAAPSYSAPKGPSYSAP-----AAPSYSAPAQSYSAPAAPSYSASKGPSYSAPA 514
Score = 68.2 bits (165), Expect = 3e-10
Identities = 47/143 (32%), Positives = 80/143 (55%), Gaps = 9/143 (6%)
Frame = +2
Query: 119 SPASPGYAA-MSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPAL-AVSSPG 292
+PA+P Y+A +P + APA+P+Y A + +P+ P+ A ++P
Sbjct: 71 APAAPSYSAPKAPTYS--------------APAAPSYSAPAAPSYSAPAAPSYSAPAAPS 116
Query: 293 YS----PGYS-PTSPSVGARGGPAAGYASPQSPGY-VPTSPAYARPGTVVAAANVYSPSS 454
YS P YS P +PS A P+ Y++P +P Y P +P+Y+ P AA + +P++
Sbjct: 117 YSAPAAPSYSAPAAPSYSAPAAPS--YSAPAAPSYSAPAAPSYSAP----AAPSYSAPAA 170
Query: 455 PAYS-PFSPNYAAASSPAYQPPS 520
P+YS P +P+Y+A ++P+Y P+
Sbjct: 171 PSYSAPAAPSYSAPAAPSYSAPA 193
Score = 67.8 bits (164), Expect = 4e-10
Identities = 54/180 (30%), Positives = 94/180 (52%), Gaps = 9/180 (5%)
Frame = +2
Query: 11 TASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAA-MSPRFGGGLGGGPA 187
+A +P S+ A + P + A ++ +PA+P Y+A +P + A
Sbjct: 110 SAPAAPSYSAPAAPSYSAPAAPSYSAPAAPSYS---APAAPSYSAPAAPSYS-------A 159
Query: 188 GGAGAY-APASPAYMATSPGMGYSPSTPAL-AVSSPGYS----PGYS-PTSPSVGARGGP 346
A +Y APA+P+Y A + +P+ P+ A ++P YS P YS P +PS A P
Sbjct: 160 PAAPSYSAPAAPSYSAPAAPSYSAPAAPSYSAPAAPSYSAPAAPSYSAPAAPSYSAPAAP 219
Query: 347 AAGYASPQSPGY-VPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPSR 523
+ Y++P +P Y P P+Y+ P A + +P++P+YS + +Y+A +SP+Y P++
Sbjct: 220 S--YSAPAAPSYSAPKGPSYSAP-----AQSYSAPAAPSYSEPAQSYSAPASPSYSAPAQ 272
Score = 67.4 bits (163), Expect = 6e-10
Identities = 55/174 (31%), Positives = 83/174 (47%), Gaps = 21/174 (12%)
Frame = +2
Query: 59 ATPGRMTPGRSPAGRFTPRMS-PASPGYAA-MSPRFGGGLGGG-PAGGAGAY-APASPAY 226
A P P +S + P S PA+P Y+A +P + A A +Y AP P+Y
Sbjct: 389 AAPSYSAPAQSYSAPAAPSYSAPAAPSYSAPAAPSYSAPAAPSYSAPAAPSYSAPKGPSY 448
Query: 227 MATSPGMGYSPSTPALAVSSPGYS----PGYS-PTSPSVGARGGPAAGYASPQSPGY--- 382
A + +P+ A ++P YS P YS P +PS A PA Y++P +P Y
Sbjct: 449 SAPADPSYSAPAQSYSAPAAPSYSAPKGPSYSAPAAPSYSA---PAQSYSAPAAPSYSAS 505
Query: 383 ------VPTSPAYARPGTVVAAANVYSPSSPAYS---PFSPNYAAASSPAYQPP 517
P +P+Y+ P +A S S+PA S P +P+Y+A ++P+Y P
Sbjct: 506 KGPSYSAPAAPSYSAPAQSYSAPAAPSYSAPAQSYSAPAAPSYSAPAAPSYSAP 559
Score = 65.5 bits (158), Expect = 2e-09
Identities = 46/145 (31%), Positives = 73/145 (50%), Gaps = 12/145 (8%)
Frame = +2
Query: 119 SPASPGYAAMSPRFGGGLGGGPAG--GAGAYAPASPAYMATSPGMGYS-PSTPALAVSS- 286
+PA P Y+A + + + G APA+P+Y A P YS P+ P+ + S
Sbjct: 450 APADPSYSAPAQSYSAPAAPSYSAPKGPSYSAPAAPSYSA--PAQSYSAPAAPSYSASKG 507
Query: 287 PGYSPGYSPTSPSVGARGGPAAGYASPQSPGY--------VPTSPAYARPGTVVAAANVY 442
P YS +P +PS A PA Y++P +P Y P +P+Y+ P AA +
Sbjct: 508 PSYS---APAAPSYSA---PAQSYSAPAAPSYSAPAQSYSAPAAPSYSAP----AAPSYS 557
Query: 443 SPSSPAYSPFSPNYAAASSPAYQPP 517
+P P+YS + +Y+A ++P+Y P
Sbjct: 558 APKGPSYSAPAQSYSAPAAPSYSAP 582
Score = 57.4 bits (137), Expect = 6e-07
Identities = 34/102 (33%), Positives = 61/102 (59%), Gaps = 5/102 (4%)
Frame = +2
Query: 230 ATSPGMGYSPSTPALAVSSPGYSPGYSPT--SPSVGARGGPAA-GYASPQSPGY-VPTSP 397
A P + Y+ + A ++P YS +PT +P+ + PAA Y++P +P Y P +P
Sbjct: 56 AYGPPIIYNSKSSYSAPAAPSYSAPKAPTYSAPAAPSYSAPAAPSYSAPAAPSYSAPAAP 115
Query: 398 AYARPGTVVAAANVYSPSSPAYS-PFSPNYAAASSPAYQPPS 520
+Y+ P AA + +P++P+YS P +P+Y+A ++P+Y P+
Sbjct: 116 SYSAP----AAPSYSAPAAPSYSAPAAPSYSAPAAPSYSAPA 153
Score = 56.2 bits (134), Expect = 1e-06
Identities = 56/185 (30%), Positives = 83/185 (44%), Gaps = 16/185 (8%)
Frame = +2
Query: 11 TASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMS---PASPGYAA-MSPRFGGGLGG 178
+AS P S+ A + P + + P S PA+P Y+A +P + G
Sbjct: 503 SASKGPSYSAPAAPSYSAPAQSYSAPAAPSYSAPAQSYSAPAAPSYSAPAAPSYSAPKGP 562
Query: 179 GPAGGAGAY-APASPAYMATSPGMGYSPSTPAL-AVSSPGYS----PGYS-PTSPSVGAR 337
+ A +Y APA+P+Y A + P P+ A ++P Y+ P YS P +PS A
Sbjct: 563 SYSAPAQSYSAPAAPSYSAPKAPVYSVPVAPSYSAPAAPSYAAPKRPTYSAPVAPSYAAP 622
Query: 338 GGPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSP-----SSPAYSPFSPNYAAASSP 502
PAA YA+P+S GY +A ++SP + +Y P S Y +S P
Sbjct: 623 --PAAAYAAPKSAGY---------------SARMFSPMLMSARTSSYGPASAGYGGSSIP 665
Query: 503 AYQPP 517
A PP
Sbjct: 666 A--PP 668
[208][TOP]
>UniRef100_B3P904 GG12928 n=1 Tax=Drosophila erecta RepID=B3P904_DROER
Length = 558
Score = 73.2 bits (178), Expect = 1e-11
Identities = 50/150 (33%), Positives = 83/150 (55%), Gaps = 20/150 (13%)
Frame = +2
Query: 119 SPASPGYAA-MSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPAL-AVSSPG 292
+PA+P Y+A +P + PA + + APA+P+Y A + +P+ P+ A ++P
Sbjct: 235 APAAPSYSAPAAPSYSA-----PASSSYS-APAAPSYSAPASSSYSAPAAPSYSAPAAPS 288
Query: 293 YS----PGYS---------PTSPSVGARGGPAAGYASPQSPGY-VPTSPAYARPGTVVAA 430
YS P YS P +PS A PA+ Y++P P Y P +P+Y+ P + +A
Sbjct: 289 YSAPAAPSYSAQKASSYSAPVAPSYSAPAAPASSYSAPAGPSYSAPAAPSYSAPASSYSA 348
Query: 431 ANVYS---PSSPAYS-PFSPNYAAASSPAY 508
S P++P+YS P +P+Y+A++SP+Y
Sbjct: 349 PKAPSYSAPAAPSYSAPAAPSYSASASPSY 378
Score = 67.8 bits (164), Expect = 4e-10
Identities = 45/156 (28%), Positives = 83/156 (53%), Gaps = 22/156 (14%)
Frame = +2
Query: 119 SPASPGYAAMSPRFGGGLG---GGPAG------GAGAY-APASPAYMATSPGMGYSPSTP 268
+PA+P Y+ +P + PA A +Y APA+P+Y A + +P+ P
Sbjct: 76 APAAPAYSPAAPSYSAPASPSYSAPASSSYSAPAAPSYSAPAAPSYSAPASSKYSAPAAP 135
Query: 269 ALAVSSPGYSPGYSPTSPSVGARGGP------AAGYASPQSPGY-VPTSPAYARPG---- 415
+ S+P S +P +PS A P ++ Y++P +P Y P +P+Y+ P
Sbjct: 136 --SYSAPASSSYSAPAAPSYSAPAAPSYSAPASSSYSAPAAPSYSAPAAPSYSAPAAPSY 193
Query: 416 TVVAAANVYSPSSPAYS-PFSPNYAAASSPAYQPPS 520
+ A+++ +P++P+YS P +P+Y+A ++P+Y P+
Sbjct: 194 SAPASSSYSAPAAPSYSAPAAPSYSAPAAPSYSAPA 229
Score = 67.4 bits (163), Expect = 6e-10
Identities = 58/182 (31%), Positives = 96/182 (52%), Gaps = 11/182 (6%)
Frame = +2
Query: 8 ATASFSPIMSSADAAGRATPGRMTPGRSP--AGRFTPRMSPASPGYAAMSPRFGGGLGGG 181
A+ S+S SS+ +A A P P A + +PA+P Y+A +
Sbjct: 93 ASPSYSAPASSSYSAP-AAPSYSAPAAPSYSAPASSKYSAPAAPSYSAPAS------SSY 145
Query: 182 PAGGAGAY-APASPAYMATSPGMGYSPSTPAL-AVSSPGYS----PGYS-PTSPSVGARG 340
A A +Y APA+P+Y A + +P+ P+ A ++P YS P YS P S S A
Sbjct: 146 SAPAAPSYSAPAAPSYSAPASSSYSAPAAPSYSAPAAPSYSAPAAPSYSAPASSSYSAPA 205
Query: 341 GPAAGYASPQSPGY-VPTSPAYARPGTVVAAANVYSPSSPAYS-PFSPNYAAASSPAYQP 514
P+ Y++P +P Y P +P+Y+ P A+++ +P++P+YS P +P+Y+A +S +Y
Sbjct: 206 APS--YSAPAAPSYSAPAAPSYSAP----ASSSYSAPAAPSYSAPAAPSYSAPASSSYSA 259
Query: 515 PS 520
P+
Sbjct: 260 PA 261
Score = 67.4 bits (163), Expect = 6e-10
Identities = 59/185 (31%), Positives = 93/185 (50%), Gaps = 14/185 (7%)
Frame = +2
Query: 8 ATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMS-PASPGYAA-MSPRFGGGLGGG 181
A S+S SS+ +A A S + P S PA+P Y+A +P +
Sbjct: 245 AAPSYSAPASSSYSAPAAPSYSAPASSSYSAPAAPSYSAPAAPSYSAPAAPSYS------ 298
Query: 182 PAGGAGAY-APASPAYMATSPGMGYSPSTPALAVSSPGYSPGYS-PTSPSVGARGGPAAG 355
A A +Y AP +P+Y A P+ PA + S+P P YS P +PS A PA+
Sbjct: 299 -AQKASSYSAPVAPSYSA--------PAAPASSYSAPA-GPSYSAPAAPSYSA---PASS 345
Query: 356 YASPQSPGY-VPTSPAYARPGTVVAAANVYSPSSPAYS---------PFSPNYAAASSPA 505
Y++P++P Y P +P+Y+ P AA + + +SP+YS P +P+Y+A ++P+
Sbjct: 346 YSAPKAPSYSAPAAPSYSAP----AAPSYSASASPSYSSSASSSYSAPAAPSYSAPAAPS 401
Query: 506 YQPPS 520
Y P+
Sbjct: 402 YSAPA 406
Score = 65.9 bits (159), Expect = 2e-09
Identities = 42/125 (33%), Positives = 72/125 (57%), Gaps = 10/125 (8%)
Frame = +2
Query: 176 GGPAGGAGAYAPASPAYMA-TSPGMGYSPSTPALAVSSPGYSPGYSPT--SPSVGARGGP 346
G A A AY+PA+P+Y A SP S+ A ++P YS +P+ +P+ P
Sbjct: 73 GYSAPAAPAYSPAAPSYSAPASPSYSAPASSSYSAPAAPSYSAPAAPSYSAPASSKYSAP 132
Query: 347 AA-GYASPQSPGY-VPTSPAYARPG----TVVAAANVYSPSSPAYS-PFSPNYAAASSPA 505
AA Y++P S Y P +P+Y+ P + A+++ +P++P+YS P +P+Y+A ++P+
Sbjct: 133 AAPSYSAPASSSYSAPAAPSYSAPAAPSYSAPASSSYSAPAAPSYSAPAAPSYSAPAAPS 192
Query: 506 YQPPS 520
Y P+
Sbjct: 193 YSAPA 197
Score = 64.3 bits (155), Expect = 5e-09
Identities = 40/115 (34%), Positives = 68/115 (59%), Gaps = 2/115 (1%)
Frame = +2
Query: 182 PAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSPGYSPTSPSVGARGGPAAGYA 361
PA G APA+PAY +P +P++P + S+P S +P +PS A P+ Y+
Sbjct: 68 PAKDQGYSAPAAPAYSPAAPSYS-APASP--SYSAPASSSYSAPAAPSYSAPAAPS--YS 122
Query: 362 SPQSPGY-VPTSPAYARPGTVVAAANVYSPSSPAYS-PFSPNYAAASSPAYQPPS 520
+P S Y P +P+Y+ P A+++ +P++P+YS P +P+Y+A +S +Y P+
Sbjct: 123 APASSKYSAPAAPSYSAP----ASSSYSAPAAPSYSAPAAPSYSAPASSSYSAPA 173
Score = 62.0 bits (149), Expect = 2e-08
Identities = 55/191 (28%), Positives = 93/191 (48%), Gaps = 21/191 (10%)
Frame = +2
Query: 11 TASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAA-MSPRFGGGLGGG-P 184
+A +P S+ A + P + A ++ +PA+P Y+A +P +
Sbjct: 178 SAPAAPSYSAPAAPSYSAPASSSYSAPAAPSYS---APAAPSYSAPAAPSYSAPASSSYS 234
Query: 185 AGGAGAY-APASPAYMATSPGMGYSPSTPALAVSSPGYSPGYSPTSPSVGARGGPAAGYA 361
A A +Y APA+P+Y A + +P+ P+ S+P S +P +PS A P+ Y+
Sbjct: 235 APAAPSYSAPAAPSYSAPASSSYSAPAAPSY--SAPASSSYSAPAAPSYSAPAAPS--YS 290
Query: 362 SPQSPGY---------VPTSPAYARPGTVVAAANVYS-PSSPAYS-PFSPNYAAASS--- 499
+P +P Y P +P+Y+ P A A+ YS P+ P+YS P +P+Y+A +S
Sbjct: 291 APAAPSYSAQKASSYSAPVAPSYSAPA---APASSYSAPAGPSYSAPAAPSYSAPASSYS 347
Query: 500 ----PAYQPPS 520
P+Y P+
Sbjct: 348 APKAPSYSAPA 358
Score = 61.2 bits (147), Expect = 4e-08
Identities = 54/170 (31%), Positives = 86/170 (50%), Gaps = 4/170 (2%)
Frame = +2
Query: 11 TASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAG 190
+A +P S+ A + P + A ++ +P +P Y+A P PAG
Sbjct: 274 SAPAAPSYSAPAAPSYSAPAAPSYSAQKASSYS---APVAPSYSA--PAAPASSYSAPAG 328
Query: 191 GAGAYAPASPAYMATSPGMGYS-PSTPAL-AVSSPGYSPGYSPTSPSVGARGGPAAGYAS 364
+ + APA+P+Y A P YS P P+ A ++P YS +P +PS A P+ Y+S
Sbjct: 329 PSYS-APAAPSYSA--PASSYSAPKAPSYSAPAAPSYS---APAAPSYSASASPS--YSS 380
Query: 365 PQSPGY-VPTSPAYARPGTVVAAANVYSPSSPAYS-PFSPNYAAASSPAY 508
S Y P +P+Y+ P AA + +P+S +YS P +P+Y+A +S Y
Sbjct: 381 SASSSYSAPAAPSYSAP----AAPSYSAPASSSYSAPAAPSYSAPASSGY 426
Score = 54.3 bits (129), Expect = 5e-06
Identities = 51/159 (32%), Positives = 73/159 (45%), Gaps = 12/159 (7%)
Frame = +2
Query: 59 ATPGRMTPGRSPAGRFTPRMS-PASPGYAA-MSPRFGGGLGGGPAGGAGAY--APASPAY 226
A P P S + P S PA+P Y+A +P + + A + APA+P+Y
Sbjct: 335 AAPSYSAPASSYSAPKAPSYSAPAAPSYSAPAAPSYSASASPSYSSSASSSYSAPAAPSY 394
Query: 227 MA-TSPGMGYSPSTPALAVSSPGYSP----GYSPTSPSVGARGGPAAGYASPQ-SPGY-- 382
A +P S+ A ++P YS GYS PA+GY++P+ S GY
Sbjct: 395 SAPAAPSYSAPASSSYSAPAAPSYSAPASSGYSAARAYSAGSAAPASGYSAPKASSGYSA 454
Query: 383 VPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASS 499
S Y+ P + AAA S S+PA S S Y+A +S
Sbjct: 455 PKASSGYSAPASSGAAA-APSYSAPASSSASSGYSAPAS 492
[209][TOP]
>UniRef100_C6F1F1 RNA polymerase II (Fragment) n=1 Tax=Plasmodium vivax
RepID=C6F1F1_PLAVI
Length = 211
Score = 72.8 bits (177), Expect = 1e-11
Identities = 57/145 (39%), Positives = 72/145 (49%), Gaps = 15/145 (10%)
Frame = +2
Query: 119 SPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMA--TSPGMG--YSPSTPALAVSS 286
SP SP Y +P GGG G G Y+P SP +P M +S +P +V+S
Sbjct: 2 SPTSPTYHLTNPASGGG-SSGLNGTKAYYSPTSPTNQLDEVNPNMMKYHSVVSPVYSVTS 60
Query: 287 PGYSPG---YSPTSPS---VGARGGPAAGYASPQSPGYVPTSPAYARPGTVV--AAANVY 442
P YSP YSPTSP + P + SP SP Y PTSP Y+ V ++ Y
Sbjct: 61 PKYSPTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPQYSPSSPVPNNPSSPHY 120
Query: 443 SP---SSPAYSPFSPNYAAASSPAY 508
SP +SP +SP SP Y + SSP Y
Sbjct: 121 SPYAIASPKFSPTSPAY-SISSPVY 144
Score = 67.4 bits (163), Expect = 6e-10
Identities = 50/132 (37%), Positives = 60/132 (45%), Gaps = 28/132 (21%)
Frame = +2
Query: 203 YAPASPAYMATSPGMG------------YSPSTPA-------------LAVSSPGY---S 298
Y+P SP Y T+P G YSP++P +V SP Y S
Sbjct: 1 YSPTSPTYHLTNPASGGGSSGLNGTKAYYSPTSPTNQLDEVNPNMMKYHSVVSPVYSVTS 60
Query: 299 PGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSP 478
P YSPTSP + P + SP SP Y PTSP Y+ + YSP+SP YSP SP
Sbjct: 61 PKYSPTSP----KYSPTSPKYSPTSPKYSPTSPKYS------PTSPKYSPTSPQYSPSSP 110
Query: 479 NYAAASSPAYQP 514
SSP Y P
Sbjct: 111 VPNNPSSPHYSP 122
Score = 63.5 bits (153), Expect = 8e-09
Identities = 46/128 (35%), Positives = 62/128 (48%), Gaps = 8/128 (6%)
Frame = +2
Query: 119 SPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYS 298
S SP Y+ SP++ + + Y+P SP Y TSP YSP++P + +SP YS
Sbjct: 50 SVVSPVYSVTSPKY--------SPTSPKYSPTSPKYSPTSPK--YSPTSPKYSPTSPKYS 99
Query: 299 PGYSPTSPSVGARGGPAAGYASP---QSPGYVPTSPAYARPGTVV-----AAANVYSPSS 454
P SPS P++ + SP SP + PTSPAY+ V A + P S
Sbjct: 100 PTSPQYSPSSPVPNNPSSPHYSPYAIASPKFSPTSPAYSISSPVYDQSGNARSKSQHPLS 159
Query: 455 PAYSPFSP 478
PAY SP
Sbjct: 160 PAYILQSP 167
Score = 56.2 bits (134), Expect = 1e-06
Identities = 47/165 (28%), Positives = 70/165 (42%), Gaps = 13/165 (7%)
Frame = +2
Query: 23 SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
SP+ S T + +P +P+ SP SP Y+ SP+
Sbjct: 53 SPVYSVTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPK--------------- 97
Query: 203 YAPASPAYMATSPGMGYSPSTP---ALAVSSPGY---SPGYSPTSPSVGARGGPAAGYAS 364
Y+P SP Y +SP + +PS+P A++SP + SP YS +SP G +
Sbjct: 98 YSPTSPQYSPSSP-VPNNPSSPHYSPYAIASPKFSPTSPAYSISSPVYDQSGNARSKSQH 156
Query: 365 PQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYS-------PFSP 478
P SP Y+ SP + + +V+SP A + PFSP
Sbjct: 157 PLSPAYILQSPVQVKQH--IQDVSVFSPIQQANAEEVQNDDPFSP 199
[210][TOP]
>UniRef100_C6F1F3 RNA polymerase II (Fragment) n=1 Tax=Plasmodium cynomolgi
RepID=C6F1F3_9APIC
Length = 225
Score = 72.0 bits (175), Expect = 2e-11
Identities = 51/133 (38%), Positives = 68/133 (51%), Gaps = 3/133 (2%)
Frame = +2
Query: 119 SPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYS 298
S SP Y+ SP++ + + Y+P SP Y+ TSP YSP++P + +SP YS
Sbjct: 50 SVVSPVYSVTSPKY--------SPTSPKYSPTSPKYLPTSPK--YSPTSPKYSPTSPKYS 99
Query: 299 PG---YSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSP 469
P YSPTSP SP SP Y PTSP P + + Y+ +SP +SP
Sbjct: 100 PTSPKYSPTSPKY-----------SPTSPQYSPTSPVPNNPSS--PHYSPYAIASPKFSP 146
Query: 470 FSPNYAAASSPAY 508
SP Y + SSP Y
Sbjct: 147 TSPAY-SISSPVY 158
Score = 70.5 bits (171), Expect = 7e-11
Identities = 46/107 (42%), Positives = 55/107 (51%), Gaps = 3/107 (2%)
Frame = +2
Query: 203 YAPASPAYMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYASPQS 373
++ SP Y TSP YSP++P + +SP Y SP YSPTSP SP S
Sbjct: 49 HSVVSPVYSVTSPK--YSPTSPKYSPTSPKYLPTSPKYSPTSPKY-----------SPTS 95
Query: 374 PGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQP 514
P Y PTSP Y+ + YSP+SP YSP SP SSP Y P
Sbjct: 96 PKYSPTSPKYS------PTSPKYSPTSPQYSPTSPVPNNPSSPHYSP 136
Score = 69.7 bits (169), Expect = 1e-10
Identities = 51/132 (38%), Positives = 64/132 (48%), Gaps = 8/132 (6%)
Frame = +2
Query: 107 TPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSS 286
+P+ SP SP Y+ SP++ L P Y+P SP Y TSP YSP++P + +S
Sbjct: 60 SPKYSPTSPKYSPTSPKY---LPTSPK-----YSPTSPKYSPTSPK--YSPTSPKYSPTS 109
Query: 287 PGYSPG---YSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVV-----AAANVY 442
P YSP YSPTSP P + SP + PTSPAY+ V A
Sbjct: 110 PKYSPTSPQYSPTSPVPNNPSSPHYSPYAIASPKFSPTSPAYSISSPVYDQSGNARNKSQ 169
Query: 443 SPSSPAYSPFSP 478
P SPAY SP
Sbjct: 170 HPLSPAYILQSP 181
[211][TOP]
>UniRef100_C4XYJ5 Predicted protein n=1 Tax=Clavispora lusitaniae ATCC 42720
RepID=C4XYJ5_CLAL4
Length = 953
Score = 72.0 bits (175), Expect = 2e-11
Identities = 65/165 (39%), Positives = 77/165 (46%), Gaps = 7/165 (4%)
Frame = +2
Query: 47 AAGRATPGRMTPGRSPAGRFTPRMSPASPGY--AAMSPRFGGGLGGGPAGGAGAY--APA 214
A G A P PAG P SP SPG A+ SP G G A GA +P
Sbjct: 391 APGPAGPAGPAGPAGPAGPSGPAGSPGSPGSPGASGSPESPGSPGSPGASGAPGSPGSPG 450
Query: 215 SPAYMATSPGMGYSPSTPALAVSSPGYSPGYSPTSP-SVGARGGPAA--GYASPQSPGYV 385
SP+ + +PG SP +P A SPG SPG SP SP S GA G P + SP SPG
Sbjct: 451 SPSSPSGAPGSPGSPGSPG-ASGSPG-SPG-SPGSPGSPGASGAPGSPGSPGSPGSPGAS 507
Query: 386 PTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
+ PG+ + + SPSSP+ SP SP AS P S
Sbjct: 508 GAPGSPGSPGSPGSPGSPGSPSSPSGSPGSPGSPGASGSPGSPGS 552
Score = 68.6 bits (166), Expect = 3e-10
Identities = 59/169 (34%), Positives = 73/169 (43%), Gaps = 3/169 (1%)
Frame = +2
Query: 23 SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYA-AMSPRFGG--GLGGGPAGG 193
SP S +PG SP +P SP+SPG + + SP G G G P
Sbjct: 527 SPSSPSGSPGSPGSPGASGSPGSPGSPGSPG-SPSSPGSSESGSPGSPGSPGASGSPGSP 585
Query: 194 AGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSPGYSPTSPSVGARGGPAAGYASPQS 373
+P SP+ + SPG SP +P A SPG SPG SP SP G SP S
Sbjct: 586 GSPGSPGSPSSPSGSPGSPSSPGSPG-ASGSPG-SPG-SPGSPGASGAPGSPGSPGSPGS 642
Query: 374 PGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
PG + A PG+ + + SPS SP SP+ AS P S
Sbjct: 643 PGSPGSPGASGSPGSPGSPGSPSSPSGSPGSPSSPSSPGASGSPGSPGS 691
Score = 66.2 bits (160), Expect = 1e-09
Identities = 62/172 (36%), Positives = 80/172 (46%), Gaps = 11/172 (6%)
Frame = +2
Query: 23 SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMS--PASPGYAAMSPRFGGGLGGGPAGGA 196
SP S + ++PG SP +P S P SPG SP G G P+ +
Sbjct: 666 SPSGSPGSPSSPSSPGASGSPGSPGSPGSPGASGSPGSPGSPG-SPSSPSGSPGSPSSPS 724
Query: 197 GAYAPASPAYMAT--SPGMGYSPSTPAL--AVSSPGYSPGYSPTSPSV-GARGGPAAGYA 361
A SP + SPG SP +P + SSP SPG SP+SPS GA G P
Sbjct: 725 SPGASGSPGSPGSPGSPGASGSPGSPGSPGSPSSPSGSPG-SPSSPSSPGASGSP----G 779
Query: 362 SPQSPGYVPTSPAYARPGTVVAAANVYSPSSP----AYSPFSPNYAAASSPA 505
SP SPG S A PG+ + + SPSSP + SP SP+ + + SP+
Sbjct: 780 SPGSPGSPGASGAPGAPGSPGSPGSPGSPSSPGSSESGSPSSPSASESGSPS 831
Score = 66.2 bits (160), Expect = 1e-09
Identities = 60/153 (39%), Positives = 76/153 (49%), Gaps = 6/153 (3%)
Frame = +2
Query: 62 TPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGG-GPAGGAGAY-APASPAYMAT 235
+PG SP+G SP+SPG A+ SP G G G +G G+ +P SP+ +
Sbjct: 703 SPGSPGSPSSPSGSPGSPSSPSSPG-ASGSPGSPGSPGSPGASGSPGSPGSPGSPSSPSG 761
Query: 236 SPGMGYSPSTPALAVSSPGYSPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPG 415
SPG SPS+P A SPG SPG SP SP G SP SPG P+SP + G
Sbjct: 762 SPGSPSSPSSPG-ASGSPG-SPG-SPGSPGASGAPGAPGSPGSPGSPGS-PSSPGSSESG 817
Query: 416 TVVAAANVYSPSSPAYS----PFSPNYAAASSP 502
SPSSP+ S P SP+ + + SP
Sbjct: 818 ---------SPSSPSASESGSPSSPSASESGSP 841
Score = 65.1 bits (157), Expect = 3e-09
Identities = 57/141 (40%), Positives = 66/141 (46%), Gaps = 7/141 (4%)
Frame = +2
Query: 119 SPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYS 298
SP SPG S G GPAG AG PA PA PS PA + SPG S
Sbjct: 373 SPGSPGSPGASGAPGAPGAPGPAGPAGPAGPAGPA----------GPSGPAGSPGSPG-S 421
Query: 299 PGYSPTSPSVGARGGPAAGYA--SPQSPGYVPTSPAYA-----RPGTVVAAANVYSPSSP 457
PG S + S G+ G P A A SP SPG P+SP+ A PG+ A+ + SP SP
Sbjct: 422 PGASGSPESPGSPGSPGASGAPGSPGSPG-SPSSPSGAPGSPGSPGSPGASGSPGSPGSP 480
Query: 458 AYSPFSPNYAAASSPAYQPPS 520
SP SP + A P S
Sbjct: 481 G-SPGSPGASGAPGSPGSPGS 500
Score = 63.9 bits (154), Expect = 6e-09
Identities = 64/174 (36%), Positives = 81/174 (46%), Gaps = 8/174 (4%)
Frame = +2
Query: 23 SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMS--PASPGYAAMSPRFGGGLGG-GPAGG 193
SP S + +PG SP +P S P SPG SP G G G +G
Sbjct: 596 SPSGSPGSPSSPGSPGASGSPGSPGSPGSPGASGAPGSPGSPG-SPGSPGSPGSPGASGS 654
Query: 194 AGAY-APASPAYMATSPGMGYSPSTPALAVSSPGYSPGYSPTSPSVGARGGPAAGYASPQ 370
G+ +P SP+ + SPG SPS+P A SPG SPG SP SP G SP
Sbjct: 655 PGSPGSPGSPSSPSGSPGSPSSPSSPG-ASGSPG-SPG-SPGSPGASGSPGSPGSPGSPS 711
Query: 371 SPGYVPTSPAY-ARPGTVVAAANVYSPSSP--AYSPFSP-NYAAASSPAYQPPS 520
SP P SP+ + PG + + SP SP + SP SP + + SSP+ P S
Sbjct: 712 SPSGSPGSPSSPSSPGASGSPGSPGSPGSPGASGSPGSPGSPGSPSSPSGSPGS 765
Score = 62.4 bits (150), Expect = 2e-08
Identities = 62/173 (35%), Positives = 79/173 (45%), Gaps = 4/173 (2%)
Frame = +2
Query: 14 ASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGG 193
AS SP + + A+ +PG SP +P +P SPG SP G G P
Sbjct: 424 ASGSPESPGSPGSPGASGAPGSPG-SPGSPSSPSGAPGSPGSPG-SP----GASGSPGSP 477
Query: 194 AGAYAPASPAYMAT--SPGMGYSPSTPALAVSSPGYSPGYSPTSP-SVGARGGPAAGYAS 364
+P SP SPG SP +P A +PG SPG SP SP S G+ G P++ S
Sbjct: 478 GSPGSPGSPGASGAPGSPGSPGSPGSPG-ASGAPG-SPG-SPGSPGSPGSPGSPSSPSGS 534
Query: 365 PQSPGYVPTSPAYARPGTVVAAANVYSP-SSPAYSPFSPNYAAASSPAYQPPS 520
P SPG S + PG+ + + SP SS + SP SP AS P S
Sbjct: 535 PGSPGSPGASGSPGSPGSPGSPGSPSSPGSSESGSPGSPGSPGASGSPGSPGS 587
Score = 62.4 bits (150), Expect = 2e-08
Identities = 64/177 (36%), Positives = 83/177 (46%), Gaps = 11/177 (6%)
Frame = +2
Query: 23 SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGY--AAMSPRFGGGLG--GGPA- 187
SP S A + + +PG SP +P SP SPG A+ SP G G G P+
Sbjct: 503 SPGASGAPGSPGSPGSPGSPG-SPGSPSSPSGSPGSPGSPGASGSPGSPGSPGSPGSPSS 561
Query: 188 -GGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY--SPGYSPTSPSVGARGGPAAGY 358
G + + +P SP SPG SP +P + SPG SP SP SPS G +
Sbjct: 562 PGSSESGSPGSPG----SPGASGSPGSPG-SPGSPGSPSSPSGSPGSPSSPGSPGASGSP 616
Query: 359 ASPQSPGYVPTSPAYARPGTVVAAANVYSPSSP--AYSPFSP-NYAAASSPAYQPPS 520
SP SPG S A PG+ + + SP SP + SP SP + + SSP+ P S
Sbjct: 617 GSPGSPGSPGASGAPGSPGSPGSPGSPGSPGSPGASGSPGSPGSPGSPSSPSGSPGS 673
Score = 62.0 bits (149), Expect = 2e-08
Identities = 64/178 (35%), Positives = 85/178 (47%), Gaps = 9/178 (5%)
Frame = +2
Query: 14 ASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGG--GPA 187
AS SP + + A+ +PG SP +P SP SPG A+ SP G G P+
Sbjct: 612 ASGSPGSPGSPGSPGASGAPGSPG-SPGSPGSPG-SPGSPG-ASGSPGSPGSPGSPSSPS 668
Query: 188 GGAGAYAPASPAYMATSPGMGYSPSTPALAVS--SPGYSPGYSPTSPSVGARGGPAA--- 352
G G+ + S + SPG SP +P + S SPG SPG SP+SPS G+ G P++
Sbjct: 669 GSPGSPSSPSSPGASGSPGSPGSPGSPGASGSPGSPG-SPG-SPSSPS-GSPGSPSSPSS 725
Query: 353 --GYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
SP SPG + A PG+ + + SPS SP SP+ AS P S
Sbjct: 726 PGASGSPGSPGSPGSPGASGSPGSPGSPGSPSSPSGSPGSPSSPSSPGASGSPGSPGS 783
Score = 60.1 bits (144), Expect = 9e-08
Identities = 62/169 (36%), Positives = 75/169 (44%), Gaps = 8/169 (4%)
Frame = +2
Query: 38 SADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPAS 217
S + +G +PG +PG SP P +P +PG A G GPAG AG PA
Sbjct: 365 SGNGSGSGSPG--SPG-SPGASGAPG-APGAPGPA------GPAGPAGPAGPAGPSGPAG 414
Query: 218 PAYMATSPGMGYSPSTPAL--------AVSSPGYSPGYSPTSPSVGARGGPAAGYASPQS 373
SPG SP +P A SPG SPG SP+SPS GA G P SP S
Sbjct: 415 SPGSPGSPGASGSPESPGSPGSPGASGAPGSPG-SPG-SPSSPS-GAPGSPG----SPGS 467
Query: 374 PGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
PG + + PG+ + +P SP SP SP AS P S
Sbjct: 468 PGASGSPGSPGSPGSPGSPGASGAPGSPG-SPGSPGSPGASGAPGSPGS 515
Score = 57.8 bits (138), Expect = 5e-07
Identities = 60/168 (35%), Positives = 78/168 (46%), Gaps = 6/168 (3%)
Frame = +2
Query: 35 SSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPA 214
SS ++ +PG +PG SP +P SP SPG SP G G P+ A
Sbjct: 560 SSPGSSESGSPG--SPG-SPGASGSPG-SPGSPGSPG-SPSSPSGSPGSPSSPGSPGASG 614
Query: 215 SPAYMAT--SPGMGYSPSTPALAVSSPGYSPGYSPTSPSVGARGGPAAGYASPQSPGYVP 388
SP + SPG +P +P + SPG SPG SP SP G SP SP P
Sbjct: 615 SPGSPGSPGSPGASGAPGSPG-SPGSPG-SPG-SPGSPGASGSPGSPGSPGSPSSPSGSP 671
Query: 389 TSPAY-ARPGTVVAAANVYSPSSP--AYSPFSP-NYAAASSPAYQPPS 520
SP+ + PG + + SP SP + SP SP + + SSP+ P S
Sbjct: 672 GSPSSPSSPGASGSPGSPGSPGSPGASGSPGSPGSPGSPSSPSGSPGS 719
Score = 57.8 bits (138), Expect = 5e-07
Identities = 54/164 (32%), Positives = 73/164 (44%), Gaps = 2/164 (1%)
Frame = +2
Query: 14 ASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLG--GGPA 187
AS SP + + A+ +PG SP +P SP SP + SP G G G P
Sbjct: 728 ASGSPGSPGSPGSPGASGSPGSPG-SPGSPSSPSGSPGSPS-SPSSPGASGSPGSPGSPG 785
Query: 188 GGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSPGYSPTSPSVGARGGPAAGYASP 367
+ AP +P SPG SP +P SSPG S SP+SPS G
Sbjct: 786 SPGASGAPGAPG----SPGSPGSPGSP----SSPGSSESGSPSSPSASESGS-------- 829
Query: 368 QSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASS 499
P+SP+ + G+ ++ + SP SP SP SP +A+ S
Sbjct: 830 ------PSSPSASESGSPGSSGSPGSPGSPG-SPGSPGSSASGS 866
Score = 57.4 bits (137), Expect = 6e-07
Identities = 54/151 (35%), Positives = 69/151 (45%), Gaps = 6/151 (3%)
Frame = +2
Query: 62 TPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSP 241
+PG SP+G SP+SPG A+ SP G G A GA AP SP SP
Sbjct: 749 SPGSPGSPSSPSGSPGSPSSPSSPG-ASGSPGSPGSPGSPGASGAPG-APGSPG----SP 802
Query: 242 GMGYSPSTPAL----AVSSPGYSPGYSPTSPSVGARGGPAAGYA--SPQSPGYVPTSPAY 403
G SPS+P + SSP S SP+SPS G P + + SP SPG P SP
Sbjct: 803 GSPGSPSSPGSSESGSPSSPSASESGSPSSPSASESGSPGSSGSPGSPGSPG-SPGSPGS 861
Query: 404 ARPGTVVAAANVYSPSSPAYSPFSPNYAAAS 496
+ G+ + + S P S + A+ S
Sbjct: 862 SASGSGSGSGSGSGSGSANSGPGSGSSASGS 892
Score = 56.6 bits (135), Expect = 1e-06
Identities = 55/150 (36%), Positives = 65/150 (43%), Gaps = 16/150 (10%)
Frame = +2
Query: 119 SPASPGYAAMSPRFGGGLG-GGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVS--SP 289
SP SPG A+ +P G G GPAG AG PA P+ A SPG SP S SP
Sbjct: 376 SPGSPG-ASGAPGAPGAPGPAGPAGPAGPAGPAGPSGPAGSPGSPGSPGASGSPESPGSP 434
Query: 290 GYSPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYA-------------RPGTVVAA 430
G SPG S S G+ G P++ +P SPG P SP + PG A
Sbjct: 435 G-SPGASGAPGSPGSPGSPSSPSGAPGSPGS-PGSPGASGSPGSPGSPGSPGSPGASGAP 492
Query: 431 ANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
+ SP SP SP + A P S
Sbjct: 493 GSPGSPGSPG----SPGASGAPGSPGSPGS 518
[212][TOP]
>UniRef100_Q5EXZ8 RNA polymerase II largest subunit (Fragment) n=1 Tax=Periplaneta
americana RepID=Q5EXZ8_PERAM
Length = 97
Score = 71.6 bits (174), Expect = 3e-11
Identities = 46/98 (46%), Positives = 54/98 (55%), Gaps = 4/98 (4%)
Frame = +2
Query: 203 YAPASPAYMATSPGMGYSPSTPALAVSSPGYSPG---YSPTSPSVGARGGPAAGYASPQS 373
Y+P SP+Y +SP S ST + SSP YSP YSPTSP P++ SP S
Sbjct: 1 YSPTSPSYSPSSPQHTPSAST-RYSPSSPSYSPTSPTYSPTSPQYS----PSSSKYSPTS 55
Query: 374 PGYVPTSPAYARPG-TVVAAANVYSPSSPAYSPFSPNY 484
P Y PTSP Y+ T A YSP+SP YSP SP Y
Sbjct: 56 PTYTPTSPNYSPSSPTYSPAVPGYSPTSPTYSPTSPAY 93
Score = 69.3 bits (168), Expect = 2e-10
Identities = 42/98 (42%), Positives = 53/98 (54%), Gaps = 3/98 (3%)
Frame = +2
Query: 119 SPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY- 295
SP SP Y+ SP+ + + +Y+P SP Y TSP YSPS+ + +SP Y
Sbjct: 2 SPTSPSYSPSSPQHTPSASTRYSPSSPSYSPTSPTYSPTSP--QYSPSSSKYSPTSPTYT 59
Query: 296 --SPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAY 403
SP YSP+SP+ PA SP SP Y PTSPAY
Sbjct: 60 PTSPNYSPSSPTY----SPAVPGYSPTSPTYSPTSPAY 93
Score = 68.6 bits (166), Expect = 3e-10
Identities = 40/92 (43%), Positives = 54/92 (58%), Gaps = 4/92 (4%)
Frame = +2
Query: 251 YSPSTPALAVSSPGYSPG----YSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGT 418
YSP++P+ + SSP ++P YSP+SPS SP SP Y PTSP Y+
Sbjct: 1 YSPTSPSYSPSSPQHTPSASTRYSPSSPSY-----------SPTSPTYSPTSPQYS---- 45
Query: 419 VVAAANVYSPSSPAYSPFSPNYAAASSPAYQP 514
+++ YSP+SP Y+P SPNY + SSP Y P
Sbjct: 46 --PSSSKYSPTSPTYTPTSPNY-SPSSPTYSP 74
Score = 57.8 bits (138), Expect = 5e-07
Identities = 32/76 (42%), Positives = 43/76 (56%), Gaps = 3/76 (3%)
Frame = +2
Query: 107 TPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSS 286
+P SP SP Y+ SP++ + + Y+P SP Y TSP YSPS+P + +
Sbjct: 27 SPSYSPTSPTYSPTSPQY--------SPSSSKYSPTSPTYTPTSP--NYSPSSPTYSPAV 76
Query: 287 PGY---SPGYSPTSPS 325
PGY SP YSPTSP+
Sbjct: 77 PGYSPTSPTYSPTSPA 92
[213][TOP]
>UniRef100_A0LSV3 Putative uncharacterized protein n=1 Tax=Acidothermus
cellulolyticus 11B RepID=A0LSV3_ACIC1
Length = 439
Score = 71.2 bits (173), Expect = 4e-11
Identities = 60/165 (36%), Positives = 72/165 (43%), Gaps = 11/165 (6%)
Frame = +2
Query: 59 ATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATS 238
+ PG + PG +P TP +P +PG A P G GGG A Y A PAY A
Sbjct: 60 SVPGSVPPGTAP----TP--APTAPGAA---PVGGATPGGGVPISAQDYQSAPPAYAAP- 109
Query: 239 PGMGYSPSTPALAVSSPGYSP-GYSPTSPSVGARGGPA-----AGYASP-----QSPGYV 385
PA + PGY P GY+ G G PA AGY+ P +PGY
Sbjct: 110 ---------PAYPSTQPGYGPAGYAQGYTPAGYAGYPAPGTTPAGYSPPGTTPAATPGYP 160
Query: 386 PTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
P PG V SPSSP Y+ YAAAS+ Y PP+
Sbjct: 161 TPGPVPQAPGAVPGYVTPGSPSSPGYAAAPGGYAAASA-GYAPPT 204
Score = 62.8 bits (151), Expect = 1e-08
Identities = 62/180 (34%), Positives = 75/180 (41%), Gaps = 16/180 (8%)
Frame = +2
Query: 23 SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
+P A G ATPG P + + P A P Y + P G GPAG A
Sbjct: 74 APTAPGAAPVGGATPGGGVPISAQDYQSAPPAYAAPPAYPSTQP------GYGPAGYAQG 127
Query: 203 YAPASPA-YMA--TSPGMGYSPS-----------TPALAVSSPGYSPGY-SPTSPSVGAR 337
Y PA A Y A T+P GYSP TP +PG PGY +P SPS
Sbjct: 128 YTPAGYAGYPAPGTTPA-GYSPPGTTPAATPGYPTPGPVPQAPGAVPGYVTPGSPSSPGY 186
Query: 338 GGPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPF-SPNYAAASSPAYQP 514
GYA+ S GY P + A P AA+ PS A P +P A ++P QP
Sbjct: 187 AAAPGGYAA-ASAGYAPPTGYAAAPAGYTAAS--APPSYAAVPPADAPTVTAEANPPEQP 243
[214][TOP]
>UniRef100_Q6ZJR1 DNA-directed RNA polymerase largest chain-like protein n=1
Tax=Oryza sativa Japonica Group RepID=Q6ZJR1_ORYSJ
Length = 138
Score = 71.2 bits (173), Expect = 4e-11
Identities = 45/106 (42%), Positives = 59/106 (55%), Gaps = 10/106 (9%)
Frame = +2
Query: 233 TSPGMGYSPSTPALAVSSPGYSPG--YSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYA 406
TSP YSP++P+ SS YSP YSP+SP + + Y SP SP Y PTSP+Y+
Sbjct: 18 TSPN--YSPTSPSYNPSSAKYSPSHAYSPSSPRLSPYSQTSPNY-SPTSPTYSPTSPSYS 74
Query: 407 RPGTVVAAANVYSPS---SPAYSPFSPNYAAASS-----PAYQPPS 520
+P + + Y+ S SP YSP SPNY+ + S P Y P S
Sbjct: 75 QPSPSYSPTSPYTTSGGPSPDYSPTSPNYSPSGSYSPTAPGYSPSS 120
[215][TOP]
>UniRef100_B4R3H4 GD16605 n=1 Tax=Drosophila simulans RepID=B4R3H4_DROSI
Length = 538
Score = 71.2 bits (173), Expect = 4e-11
Identities = 44/123 (35%), Positives = 73/123 (59%), Gaps = 8/123 (6%)
Frame = +2
Query: 176 GGPAGGAGAYAPASPAYMATSPGMGYSPSTPAL-AVSSPGYS----PGYS-PTSPSVGAR 337
G A A Y+PA+P+Y A + +P+ P+ A ++P YS P YS P +PS A
Sbjct: 73 GYSAPAAPVYSPAAPSYSAPASSSYSAPAAPSYSAPAAPSYSAPAAPSYSAPAAPSYSAP 132
Query: 338 GGPAAGYASPQSPGY-VPTSPAYARPGTVVAAANVYSPSSPAYS-PFSPNYAAASSPAYQ 511
P+ Y++P +P Y P +P+Y+ P AA + +P++P+YS P +P+Y+A ++P+Y
Sbjct: 133 AAPS--YSAPAAPSYSAPAAPSYSAP----AAQSYSAPAAPSYSAPAAPSYSAPAAPSYS 186
Query: 512 PPS 520
P+
Sbjct: 187 APA 189
Score = 70.9 bits (172), Expect = 5e-11
Identities = 60/181 (33%), Positives = 93/181 (51%), Gaps = 10/181 (5%)
Frame = +2
Query: 8 ATASFSPIMSSADAAGRAT--PGRMTPGRSPAGRFTPRMS-PASPGYAAMSPRFGGGLGG 178
A S+S +S+ +A A P P S + P S PA+P Y+A P +
Sbjct: 197 AAPSYSAQKTSSYSAPAAPSYPAPAAPASSYSAPAGPSYSAPAAPSYSA--PSYSAPASS 254
Query: 179 GPAGGAGAY-APASPAYMA-TSPGMGYSPSTPALAVSSPGYSPGYSPT--SPSVGARGGP 346
A A AY APA+P+Y A +P S S + +S YS +PT +P + P
Sbjct: 255 YSAPKAPAYSAPAAPSYSAPAAPSYSSSASPSYSSPASSSYSAPAAPTYSAPKAQSYSAP 314
Query: 347 AA-GYASPQSPGY-VPTSPAYARPGTVVAAANVYSPSSPAYS-PFSPNYAAASSPAYQPP 517
AA Y++P +P Y P +P+Y+ P AA + +P++P+YS P S +Y+A ++P+Y P
Sbjct: 315 AAPSYSAPAAPSYSAPAAPSYSAP----AAPSYSAPAAPSYSAPASSSYSAPAAPSYSAP 370
Query: 518 S 520
+
Sbjct: 371 A 371
Score = 68.2 bits (165), Expect = 3e-10
Identities = 48/148 (32%), Positives = 81/148 (54%), Gaps = 14/148 (9%)
Frame = +2
Query: 119 SPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPAL-AVSSPGY 295
+PA+P Y+ +P + PA + + APA+P+Y A + +P+ P+ A ++P Y
Sbjct: 76 APAAPVYSPAAPSY-----SAPASSSYS-APAAPSYSAPAAPSYSAPAAPSYSAPAAPSY 129
Query: 296 S----PGYS-PTSPSVGARGGP------AAGYASPQSPGY-VPTSPAYARPGTVVAAANV 439
S P YS P +PS A P A Y++P +P Y P +P+Y+ P AA +
Sbjct: 130 SAPAAPSYSAPAAPSYSAPAAPSYSAPAAQSYSAPAAPSYSAPAAPSYSAP----AAPSY 185
Query: 440 YSPSSPAYS-PFSPNYAAASSPAYQPPS 520
+P++P+YS P +P+Y+A + +Y P+
Sbjct: 186 SAPAAPSYSAPAAPSYSAQKTSSYSAPA 213
Score = 64.7 bits (156), Expect = 4e-09
Identities = 57/182 (31%), Positives = 88/182 (48%), Gaps = 13/182 (7%)
Frame = +2
Query: 11 TASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAA-MSPRFGGGLGGGPA 187
+A +P S+ A + P + A ++ +PA+P Y+A +P + A
Sbjct: 138 SAPAAPSYSAPAAPSYSAPAAQSYSAPAAPSYS---APAAPSYSAPAAPSYS-------A 187
Query: 188 GGAGAY-APASPAYMA---TSPGMGYSPSTPALAVSSPGYSPGYSPTSPSVGARGGP--- 346
A +Y APA+P+Y A +S +PS PA A + YS +P PS A P
Sbjct: 188 PAAPSYSAPAAPSYSAQKTSSYSAPAAPSYPAPAAPASSYS---APAGPSYSAPAAPSYS 244
Query: 347 AAGYASPQSPGYVPTSPAYARPG----TVVAAANVYSPSSPAY-SPFSPNYAAASSPAYQ 511
A Y++P S P +PAY+ P + AA + S +SP+Y SP S +Y+A ++P Y
Sbjct: 245 APSYSAPASSYSAPKAPAYSAPAAPSYSAPAAPSYSSSASPSYSSPASSSYSAPAAPTYS 304
Query: 512 PP 517
P
Sbjct: 305 AP 306
Score = 63.2 bits (152), Expect = 1e-08
Identities = 58/185 (31%), Positives = 88/185 (47%), Gaps = 15/185 (8%)
Frame = +2
Query: 11 TASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMS-PASPGYAA-MSPRFGGGLGGGP 184
+A P S+ A + P P S + P S PA+P Y+A +P +
Sbjct: 228 SAPAGPSYSAPAAPSYSAPSYSAPASSYSAPKAPAYSAPAAPSYSAPAAPSYSSSASPSY 287
Query: 185 AGGAGAY--APASPAYMATSPGMGYSPSTPAL-AVSSPGYS----PGYS-PTSPSVGARG 340
+ A + APA+P Y A +P+ P+ A ++P YS P YS P +PS A
Sbjct: 288 SSPASSSYSAPAAPTYSAPKAQSYSAPAAPSYSAPAAPSYSAPAAPSYSAPAAPSYSAPA 347
Query: 341 GPAAGYASPQSPGY-VPTSPAYARPGTVVAAANVYSPSSPAYS----PFSPNYAAASSPA 505
P+ Y++P S Y P +P+Y+ P AA YS +PA S P +P+Y+A +S +
Sbjct: 348 APS--YSAPASSSYSAPAAPSYSAP-----AAPSYS--APASSSYSAPAAPSYSAPASQS 398
Query: 506 YQPPS 520
Y P+
Sbjct: 399 YSAPA 403
[216][TOP]
>UniRef100_A9U3I4 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens
RepID=A9U3I4_PHYPA
Length = 291
Score = 70.9 bits (172), Expect = 5e-11
Identities = 56/165 (33%), Positives = 81/165 (49%), Gaps = 2/165 (1%)
Frame = +2
Query: 26 PIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAY 205
P S+ A TP P S TP +SP Y+ +P GG P + +Y
Sbjct: 53 PPPSTDPPATPYTPSYSPPVASDPSPVTPTPVYSSPPYSPGTPS-----GGSPVTPSPSY 107
Query: 206 A--PASPAYMATSPGMGYSPSTPALAVSSPGYSPGYSPTSPSVGARGGPAAGYASPQSPG 379
+ P SP ++SP +PS+P SSP YSP +P+SPS A GP+ + SP
Sbjct: 108 SSPPYSPTPSSSSP---TTPSSP--TYSSPPYSP--APSSPSPTAPSGPSPSSPTYSSPP 160
Query: 380 YVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQP 514
Y PT P+ + P + ++ YSP+ + SP +P+ + SSP Y P
Sbjct: 161 YSPT-PSGSSPSSPTYSSPPYSPTPSSSSPTTPSSPSYSSPPYSP 204
Score = 68.9 bits (167), Expect = 2e-10
Identities = 61/173 (35%), Positives = 83/173 (47%), Gaps = 20/173 (11%)
Frame = +2
Query: 59 ATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGL--GGGPAGGAGAYA--PASPAY 226
ATP TP SP P SP +P SP + G GG P + +Y+ P SP
Sbjct: 61 ATP--YTPSYSPPVASDP--SPVTPTPVYSSPPYSPGTPSGGSPVTPSPSYSSPPYSPTP 116
Query: 227 MATSPGMGYSPSTPALAVSSPGYSPGYSPTSPSVGARGGPAAGYASPQSPGYVPT----- 391
++SP +PS+P SSP YSP +P+SPS A GP+ + SP Y PT
Sbjct: 117 SSSSPT---TPSSPTY--SSPPYSP--APSSPSPTAPSGPSPSSPTYSSPPYSPTPSGSS 169
Query: 392 --SPAYARP--GTVVAAANVYSPSSPAYS-------PFSPNYAAASSPAYQPP 517
SP Y+ P ++++ +PSSP+YS P P+ + SSP Y P
Sbjct: 170 PSSPTYSSPPYSPTPSSSSPTTPSSPSYSSPPYSPTPSDPSPSTPSSPTYSSP 222
Score = 67.4 bits (163), Expect = 6e-10
Identities = 56/187 (29%), Positives = 81/187 (43%), Gaps = 19/187 (10%)
Frame = +2
Query: 11 TASFSPIMSSADAAGRATPGRMTPGRSPA-----GRFTPRMSPASPGYAAMSPRFGGGLG 175
T S+SP ++S + TP +P SP TP S +SP Y+
Sbjct: 65 TPSYSPPVASDPSPVTPTPVYSSPPYSPGTPSGGSPVTPSPSYSSPPYSPTPSSSSPTTP 124
Query: 176 GGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSPGYSPTSPSVGARGGP--- 346
P + Y+PA + T+P G SPS+P SSP YSP S +SPS P
Sbjct: 125 SSPTYSSPPYSPAPSSPSPTAPS-GPSPSSPTY--SSPPYSPTPSGSSPSSPTYSSPPYS 181
Query: 347 ----AAGYASPQSPGY-------VPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAA 493
++ +P SP Y P+ P+ + P + ++ YSP+ SP +P+
Sbjct: 182 PTPSSSSPTTPSSPSYSSPPYSPTPSDPSPSTPSSPTYSSPPYSPTPSGPSPPTPSSPTY 241
Query: 494 SSPAYQP 514
SSP Y P
Sbjct: 242 SSPPYSP 248
Score = 62.8 bits (151), Expect = 1e-08
Identities = 54/193 (27%), Positives = 81/193 (41%), Gaps = 22/193 (11%)
Frame = +2
Query: 2 INATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGG 181
+ ++ +SP S + +P +P SP + +P+SP Y+ SP +
Sbjct: 84 VYSSPPYSPGTPSGGSPVTPSPSYSSPPYSPTPSSSSPTTPSSPTYS--SPPYSPAPSSP 141
Query: 182 PAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYS-PGYSPTSPSVGARGGPAAGY 358
+P+SP Y +SP YSP+ + SSP YS P YSPT S + Y
Sbjct: 142 SPTAPSGPSPSSPTY--SSPP--YSPTPSGSSPSSPTYSSPPYSPTPSSSSPTTPSSPSY 197
Query: 359 ASP-------------------QSPGYVPT--SPAYARPGTVVAAANVYSPSSPAYSPFS 475
+SP SP Y PT P+ P + ++ YSP+ SP +
Sbjct: 198 SSPPYSPTPSDPSPSTPSSPTYSSPPYSPTPSGPSPPTPSSPTYSSPPYSPTPSGSSPTT 257
Query: 476 PNYAAASSPAYQP 514
P+ + SSP Y P
Sbjct: 258 PSSPSYSSPPYSP 270
Score = 60.8 bits (146), Expect = 5e-08
Identities = 47/144 (32%), Positives = 63/144 (43%), Gaps = 3/144 (2%)
Frame = +2
Query: 92 PAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPA 271
P+ P P +P + + P+ +SP Y +P G SP TP+
Sbjct: 46 PSLTLCPPPPSTDPPATPYTPSYSPPVASDPSPVTPTPVYSSPPYSPGTPSGG-SPVTPS 104
Query: 272 LAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVAAANVY 442
+ SSP YSP SPT+PS P A P SP PT+P+ P + ++ Y
Sbjct: 105 PSYSSPPYSPTPSSSSPTTPSSPTYSSPPYSPA-PSSPS--PTAPSGPSPSSPTYSSPPY 161
Query: 443 SPSSPAYSPFSPNYAAASSPAYQP 514
SP+ SP SP Y SSP Y P
Sbjct: 162 SPTPSGSSPSSPTY---SSPPYSP 182
[217][TOP]
>UniRef100_A8JUV4 CG34333 n=1 Tax=Drosophila melanogaster RepID=A8JUV4_DROME
Length = 578
Score = 70.9 bits (172), Expect = 5e-11
Identities = 60/198 (30%), Positives = 98/198 (49%), Gaps = 27/198 (13%)
Frame = +2
Query: 8 ATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMS-PASPGYAA-MSPRFGGGLGGG 181
A S+S SS+ +A A S + P S PAS Y+A +P +
Sbjct: 125 AAPSYSAPASSSYSAPAAPSYSAPAAPSYSAPAAPSYSAPASSSYSAPAAPSYS------ 178
Query: 182 PAGGAGAY-APASPAYMATSPGMGYSPSTPAL-AVSSPGYS----PGYS---------PT 316
A A +Y APA+P+Y A + +P+ P+ A ++P YS P YS P
Sbjct: 179 -APAAPSYSAPAAPSYSAPAAPSYSAPAAPSYSAPAAPSYSAPSAPSYSAQKTSSYSAPA 237
Query: 317 SPSVGARGGPAAGYASPQSPGY-VPTSPAYARPG--------TVVAAANVYSPSSPAYS- 466
+PS A PA+ Y++P P Y P +P+Y+ P + + A + +P++P+YS
Sbjct: 238 APSYHAPAAPASSYSAPAGPSYSAPAAPSYSAPSYSAPASSYSALKAPSYSAPAAPSYSA 297
Query: 467 PFSPNYAAASSPAYQPPS 520
P +P+Y++++SP+Y P+
Sbjct: 298 PAAPSYSSSASPSYSSPA 315
Score = 70.5 bits (171), Expect = 7e-11
Identities = 50/150 (33%), Positives = 83/150 (55%), Gaps = 16/150 (10%)
Frame = +2
Query: 119 SPASPGYAAMSPRFGGGLGGG-PAGGAGAY-APASPAYMATSPGMGYSPSTPAL-AVSSP 289
+PA+P Y+ +P + A A +Y APA+P+Y A + +P+ P+ A +S
Sbjct: 76 APAAPVYSPAAPSYSAPAAPSYSAPAAPSYSAPAAPSYSAPAAPSYSAPAAPSYSAPASS 135
Query: 290 GYS----PGYS-PTSPSVGARGGP------AAGYASPQSPGY-VPTSPAYARPGTVVAAA 433
YS P YS P +PS A P ++ Y++P +P Y P +P+Y+ P AA
Sbjct: 136 SYSAPAAPSYSAPAAPSYSAPAAPSYSAPASSSYSAPAAPSYSAPAAPSYSAP----AAP 191
Query: 434 NVYSPSSPAYS-PFSPNYAAASSPAYQPPS 520
+ +P++P+YS P +P+Y+A ++P+Y PS
Sbjct: 192 SYSAPAAPSYSAPAAPSYSAPAAPSYSAPS 221
Score = 67.4 bits (163), Expect = 6e-10
Identities = 43/131 (32%), Positives = 74/131 (56%), Gaps = 18/131 (13%)
Frame = +2
Query: 182 PAGGAGAYAPASPAYMATSPGMGYSPSTPAL-AVSSPGYS----PGYS-PTSPSVGARGG 343
PA G APA+P Y +P +P+ P+ A ++P YS P YS P +PS A
Sbjct: 68 PAKDQGYSAPAAPVYSPAAPSYS-APAAPSYSAPAAPSYSAPAAPSYSAPAAPSYSAPAA 126
Query: 344 P------AAGYASPQSPGY-VPTSPAYARPG----TVVAAANVYSPSSPAYS-PFSPNYA 487
P ++ Y++P +P Y P +P+Y+ P + A+++ +P++P+YS P +P+Y+
Sbjct: 127 PSYSAPASSSYSAPAAPSYSAPAAPSYSAPAAPSYSAPASSSYSAPAAPSYSAPAAPSYS 186
Query: 488 AASSPAYQPPS 520
A ++P+Y P+
Sbjct: 187 APAAPSYSAPA 197
Score = 67.0 bits (162), Expect = 8e-10
Identities = 58/181 (32%), Positives = 93/181 (51%), Gaps = 11/181 (6%)
Frame = +2
Query: 11 TASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAG 190
+A +P S+ A + P P S A + + +PA+P Y A P PAG
Sbjct: 202 SAPAAPSYSAPAAPSYSAPS--APSYS-AQKTSSYSAPAAPSYHA--PAAPASSYSAPAG 256
Query: 191 GAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYS----PGYS-PTSPSVGARGGPAAG 355
+ + APA+P+Y A S +P++ A+ +P YS P YS P +PS + P+
Sbjct: 257 PSYS-APAAPSYSAPSYS---APASSYSALKAPSYSAPAAPSYSAPAAPSYSSSASPS-- 310
Query: 356 YASPQSPGY-VPTSPAYARPG----TVVAAANVYSPSSPAYS-PFSPNYAAASSPAYQPP 517
Y+SP S Y P +P Y+ P + AA + +P++P+YS P S +Y+A ++P+Y P
Sbjct: 311 YSSPASSSYSAPAAPTYSAPKAQSYSAPAAPSYSAPAAPSYSAPASSSYSAPAAPSYSAP 370
Query: 518 S 520
+
Sbjct: 371 A 371
Score = 63.2 bits (152), Expect = 1e-08
Identities = 53/186 (28%), Positives = 86/186 (46%), Gaps = 16/186 (8%)
Frame = +2
Query: 11 TASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMS-PASPGYAA-MSPRFGGGLGGGP 184
+A P S+ A + P P S + P S PA+P Y+A +P +
Sbjct: 252 SAPAGPSYSAPAAPSYSAPSYSAPASSYSALKAPSYSAPAAPSYSAPAAPSYSSSASPSY 311
Query: 185 AGGAGAY--APASPAYMATSPGMGYSPSTPALAV------SSPGYSPGYSPTSPSVGARG 340
+ A + APA+P Y A +P+ P+ + S+P S +P +PS A
Sbjct: 312 SSPASSSYSAPAAPTYSAPKAQSYSAPAAPSYSAPAAPSYSAPASSSYSAPAAPSYSAPA 371
Query: 341 GPAAGYASPQSPGY-VPTSPAYARPGTV-VAAANVYSPSSPAYS----PFSPNYAAASSP 502
P+ Y++P +P Y P S +Y+ P +A S S+PA S P +P+Y+A ++P
Sbjct: 372 APS--YSAPAAPSYSAPASSSYSAPAAPSYSAPAAPSYSAPASSSYSAPAAPSYSAPAAP 429
Query: 503 AYQPPS 520
+Y P+
Sbjct: 430 SYSAPA 435
Score = 58.9 bits (141), Expect = 2e-07
Identities = 56/185 (30%), Positives = 85/185 (45%), Gaps = 15/185 (8%)
Frame = +2
Query: 8 ATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMS-PASPGYAA-MSPRFGGGLGGG 181
A S+S SS+ +A A S + P S PA+P Y+A +P +
Sbjct: 157 AAPSYSAPASSSYSAPAAPSYSAPAAPSYSAPAAPSYSAPAAPSYSAPAAPSYS------ 210
Query: 182 PAGGAGAY-APASPAYMATSPGMGYSPSTPALAVSSPGYSPGYSPTSPSVGARGGP---A 349
A A +Y AP++P+Y A +P+ P+ + S +P PS A P A
Sbjct: 211 -APAAPSYSAPSAPSYSAQKTSSYSAPAAPSYHAPAAPASSYSAPAGPSYSAPAAPSYSA 269
Query: 350 AGYASPQS-------PGY-VPTSPAYARPGTVVAAANVYSPSSPAY-SPFSPNYAAASSP 502
Y++P S P Y P +P+Y+ P AA + S +SP+Y SP S +Y+A ++P
Sbjct: 270 PSYSAPASSYSALKAPSYSAPAAPSYSAP----AAPSYSSSASPSYSSPASSSYSAPAAP 325
Query: 503 AYQPP 517
Y P
Sbjct: 326 TYSAP 330
Score = 53.9 bits (128), Expect = 7e-06
Identities = 49/181 (27%), Positives = 80/181 (44%), Gaps = 9/181 (4%)
Frame = +2
Query: 11 TASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAA-MSPRFGGGLGGG-P 184
+A +P S+ A + P + A ++ +PA+P Y+A +P +
Sbjct: 336 SAPAAPSYSAPAAPSYSAPASSSYSAPAAPSYS---APAAPSYSAPAAPSYSAPASSSYS 392
Query: 185 AGGAGAY-APASPAYMATSPGMGYSPSTPAL-AVSSPGYS----PGYS-PTSPSVGARGG 343
A A +Y APA+P+Y A + +P+ P+ A ++P YS P YS P +PS A
Sbjct: 393 APAAPSYSAPAAPSYSAPASSSYSAPAAPSYSAPAAPSYSAPAAPSYSAPAAPSYSAPAS 452
Query: 344 PAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPSR 523
A S G + Y+ P T + S SPA S +S ++ +S Y P+
Sbjct: 453 SGYSAARAYSAGSAAPASGYSAPKTSSGYSAPASSGSPAASSYSAPASSTASSGYSAPAS 512
Query: 524 R 526
+
Sbjct: 513 K 513
[218][TOP]
>UniRef100_UPI00004C0623 PREDICTED: similar to zinc finger protein 239 (predicted) isoform 1
n=1 Tax=Canis lupus familiaris RepID=UPI00004C0623
Length = 554
Score = 70.5 bits (171), Expect = 7e-11
Identities = 50/141 (35%), Positives = 60/141 (42%), Gaps = 5/141 (3%)
Frame = +2
Query: 107 TPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSS 286
+P P SPG+ + SPRF P SP + + SPG + P +P A S
Sbjct: 62 SPGFEPQSPGFESQSPRF---------------EPESPGFESRSPG--FVPPSPEFAPRS 104
Query: 287 P---GYSPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAY--ARPGTVVAAANVYSPS 451
P SP + P SP PQSPGY P SP Y PG Y P
Sbjct: 105 PDSDSQSPEFEPQSPRY-----------EPQSPGYEPRSPGYEPKSPG--------YEPK 145
Query: 452 SPAYSPFSPNYAAASSPAYQP 514
SP Y P SP Y + SP Y+P
Sbjct: 146 SPGYEPRSPGY-ESQSPGYEP 165
[219][TOP]
>UniRef100_C6F1F6 RNA polymerase II (Fragment) n=1 Tax=Plasmodium vivax
RepID=C6F1F6_PLAVI
Length = 211
Score = 70.5 bits (171), Expect = 7e-11
Identities = 57/149 (38%), Positives = 71/149 (47%), Gaps = 19/149 (12%)
Frame = +2
Query: 119 SPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMA--TSPGMG---------YSPST 265
SP SP Y +P GGG G G Y+P SP +P M YS ++
Sbjct: 2 SPTSPTYHLTNPASGGG-SSGLNGTKAYYSPTSPTNQLDEVNPNMMKYHSVVSPVYSVTS 60
Query: 266 PALAVSSPGYSPG---YSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVV--AA 430
P + +SP YSP YSPTSP P + SP SP Y PTSP Y+ V +
Sbjct: 61 PKXSPTSPKYSPTSPKYSPTSPKYS----PTSPKYSPTSPKYSPTSPQYSPSSPVPNNPS 116
Query: 431 ANVYSP---SSPAYSPFSPNYAAASSPAY 508
+ YSP +SP +SP SP Y + SSP Y
Sbjct: 117 SPHYSPYAIASPKFSPTSPAY-SISSPVY 144
Score = 64.3 bits (155), Expect = 5e-09
Identities = 49/132 (37%), Positives = 59/132 (44%), Gaps = 28/132 (21%)
Frame = +2
Query: 203 YAPASPAYMATSPGMG------------YSPSTPA-------------LAVSSPGY---S 298
Y+P SP Y T+P G YSP++P +V SP Y S
Sbjct: 1 YSPTSPTYHLTNPASGGGSSGLNGTKAYYSPTSPTNQLDEVNPNMMKYHSVVSPVYSVTS 60
Query: 299 PGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSP 478
P SPTSP + P + SP SP Y PTSP Y+ + YSP+SP YSP SP
Sbjct: 61 PKXSPTSP----KYSPTSPKYSPTSPKYSPTSPKYS------PTSPKYSPTSPQYSPSSP 110
Query: 479 NYAAASSPAYQP 514
SSP Y P
Sbjct: 111 VPNNPSSPHYSP 122
Score = 62.0 bits (149), Expect = 2e-08
Identities = 46/128 (35%), Positives = 61/128 (47%), Gaps = 8/128 (6%)
Frame = +2
Query: 119 SPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYS 298
S SP Y+ SP+ + + Y+P SP Y TSP YSP++P + +SP YS
Sbjct: 50 SVVSPVYSVTSPKX--------SPTSPKYSPTSPKYSPTSPK--YSPTSPKYSPTSPKYS 99
Query: 299 PGYSPTSPSVGARGGPAAGYASP---QSPGYVPTSPAYARPGTVV-----AAANVYSPSS 454
P SPS P++ + SP SP + PTSPAY+ V A + P S
Sbjct: 100 PTSPQYSPSSPVPNNPSSPHYSPYAIASPKFSPTSPAYSISSPVYDQSGNARSKSQHPLS 159
Query: 455 PAYSPFSP 478
PAY SP
Sbjct: 160 PAYILQSP 167
Score = 57.0 bits (136), Expect = 8e-07
Identities = 47/165 (28%), Positives = 70/165 (42%), Gaps = 13/165 (7%)
Frame = +2
Query: 23 SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
SP+ S T + +P +P+ SP SP Y+ SP+
Sbjct: 53 SPVYSVTSPKXSPTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPK--------------- 97
Query: 203 YAPASPAYMATSPGMGYSPSTP---ALAVSSPGY---SPGYSPTSPSVGARGGPAAGYAS 364
Y+P SP Y +SP + +PS+P A++SP + SP YS +SP G +
Sbjct: 98 YSPTSPQYSPSSP-VPNNPSSPHYSPYAIASPKFSPTSPAYSISSPVYDQSGNARSKSQH 156
Query: 365 PQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYS-------PFSP 478
P SP Y+ SP + + +V+SP A + PFSP
Sbjct: 157 PLSPAYILQSPVQVKQH--IQDVSVFSPIQQANAEEVQNDDPFSP 199
[220][TOP]
>UniRef100_Q1WKU4 Putative RNA polymerase II 215 kD subunit (Fragment) n=1
Tax=Drosophila erecta RepID=Q1WKU4_DROER
Length = 760
Score = 70.1 bits (170), Expect = 9e-11
Identities = 51/124 (41%), Positives = 63/124 (50%), Gaps = 6/124 (4%)
Frame = +2
Query: 53 GRATPGRMTPGRSP-AGRFTPRMSPASPGYAAMSP---RFGGGLGGGPAGGAGAYAPASP 220
G +TP MTP +P A TPR +AM+P F +G + +++PA P
Sbjct: 638 GGSTPS-MTPPMTPWANCNTPRYFSPPGHVSAMTPGGPSFSPSAASDASGMSPSWSPAHP 696
Query: 221 AYMATSPGMGYSPSTPALAVSSPGYSPGYSPTSPSVGAR--GGPAAGYASPQSPGYVPTS 394
+SPG SP PA SP SP YSPTSP+ A GG + Y SP SP Y PTS
Sbjct: 697 GSSPSSPGPSMSPYFPA----SPSVSPSYSPTSPNYTASSPGGASPNY-SPSSPNYSPTS 751
Query: 395 PAYA 406
P YA
Sbjct: 752 PLYA 755
[221][TOP]
>UniRef100_B4I9T9 GM19220 n=1 Tax=Drosophila sechellia RepID=B4I9T9_DROSE
Length = 506
Score = 70.1 bits (170), Expect = 9e-11
Identities = 44/132 (33%), Positives = 72/132 (54%), Gaps = 17/132 (12%)
Frame = +2
Query: 176 GGPAGGAGAYAPASPAYMATSPGMGYSPSTPAL-AVSSPGYS----PGYS-PTSPSVGAR 337
G PA A Y+PA+P+Y A + +P+ P+ A ++P YS P YS P S S A
Sbjct: 73 GYPAPAAPVYSPAAPSYSAPASSSYSAPAAPSYSAPAAPSYSAPAAPSYSAPASSSYSAP 132
Query: 338 GGP------AAGYASPQSPGY-VPTSPAYARPG----TVVAAANVYSPSSPAYSPFSPNY 484
P A Y++P +P Y P +P+Y+ P + AA + +P++P +P +P+Y
Sbjct: 133 AAPSYSAPAAPSYSAPAAPSYSAPAAPSYSAPAAQSYSAPAAPSYSAPAAPYSAPAAPSY 192
Query: 485 AAASSPAYQPPS 520
+A ++P+Y P+
Sbjct: 193 SAPAAPSYSAPA 204
Score = 69.7 bits (169), Expect = 1e-10
Identities = 56/177 (31%), Positives = 93/177 (52%), Gaps = 6/177 (3%)
Frame = +2
Query: 8 ATASFSPIMSSADAAGRAT--PGRMTPGRSPAGRFTPRMS-PASPGYAAMSPRFGGGLGG 178
A S+S +S+ +A A P P S + P S PA+P Y+A P +
Sbjct: 204 AAPSYSAQKTSSYSAPAAPSYPAPAAPASSYSAPAGPSYSAPAAPSYSA--PSYSAPASS 261
Query: 179 GPAGGAGAY-APASPAYMATSPGMGYSPSTPALAVSSPGYSPGYSPTSPSVGARGGPAAG 355
A A AY APA+P+Y A + + S ++P + SSP S +P +P+ A
Sbjct: 262 YSAPKASAYSAPAAPSYSAPAAPLYSSSASP--SYSSPASSSYSAPAAPTYSV--PKAQS 317
Query: 356 YASPQSPGY-VPTSPAYARPGTVVAAANVYSPSSPAYS-PFSPNYAAASSPAYQPPS 520
Y++P +P Y P +P+Y+ P A+++ +P++P+YS P S +Y+A ++P+Y P+
Sbjct: 318 YSAPAAPSYSAPAAPSYSAP----ASSSYSAPAAPSYSAPASQSYSAPAAPSYSAPA 370
Score = 67.0 bits (162), Expect = 8e-10
Identities = 56/200 (28%), Positives = 96/200 (48%), Gaps = 28/200 (14%)
Frame = +2
Query: 5 NATASFSPIMSSADAAGRATPGRMTPGRSPAG------RFTPRMSPASPGYAA-MSPRFG 163
N+ +S+SP A + P P SPA + +PA+P Y+A +P +
Sbjct: 61 NSQSSYSP------AKDQGYPAPAAPVYSPAAPSYSAPASSSYSAPAAPSYSAPAAPSYS 114
Query: 164 GGLGGGPAGGAGAY--APASPAYMATSPGMGYSPSTPAL-AVSSPGYS--PGYSPTSPSV 328
+ A + APA+P+Y A + +P+ P+ A ++P YS S ++P+
Sbjct: 115 APAAPSYSAPASSSYSAPAAPSYSAPAAPSYSAPAAPSYSAPAAPSYSAPAAQSYSAPAA 174
Query: 329 GARGGPAAGYASPQSPGY-VPTSPAYARPG------------TVVAAANVYSPSSPAYS- 466
+ PAA Y++P +P Y P +P+Y+ P + AA + +P++PA S
Sbjct: 175 PSYSAPAAPYSAPAAPSYSAPAAPSYSAPAAPSYSAQKTSSYSAPAAPSYPAPAAPASSY 234
Query: 467 --PFSPNYAAASSPAYQPPS 520
P P+Y+A ++P+Y PS
Sbjct: 235 SAPAGPSYSAPAAPSYSAPS 254
Score = 61.6 bits (148), Expect = 3e-08
Identities = 59/182 (32%), Positives = 86/182 (47%), Gaps = 13/182 (7%)
Frame = +2
Query: 11 TASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAA-MSPRFGGGLGGGPA 187
+A +P S+ A + P + A ++ +PA+P Y+A +P A
Sbjct: 138 SAPAAPSYSAPAAPSYSAPAAPSYSAPAAQSYS---APAAPSYSAPAAPYSAPAAPSYSA 194
Query: 188 GGAGAY-APASPAYMA---TSPGMGYSPSTPALAVSSPGYSPGYSPTSPSVGARGGP--- 346
A +Y APA+P+Y A +S +PS PA A + YS +P PS A P
Sbjct: 195 PAAPSYSAPAAPSYSAQKTSSYSAPAAPSYPAPAAPASSYS---APAGPSYSAPAAPSYS 251
Query: 347 AAGYASPQSPGYVPTSPAY---ARPGTVVAAANVYSPS-SPAY-SPFSPNYAAASSPAYQ 511
A Y++P S P + AY A P AA +YS S SP+Y SP S +Y+A ++P Y
Sbjct: 252 APSYSAPASSYSAPKASAYSAPAAPSYSAPAAPLYSSSASPSYSSPASSSYSAPAAPTYS 311
Query: 512 PP 517
P
Sbjct: 312 VP 313
[222][TOP]
>UniRef100_Q0UCC9 Putative uncharacterized protein n=1 Tax=Phaeosphaeria nodorum
RepID=Q0UCC9_PHANO
Length = 351
Score = 70.1 bits (170), Expect = 9e-11
Identities = 60/196 (30%), Positives = 74/196 (37%), Gaps = 55/196 (28%)
Frame = +2
Query: 98 GRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGM----GYSPST 265
G +PR SP +P +A SP + GL P +P Y T+P YSP+
Sbjct: 135 GATSPRYSPPTPHFAPRSPSYAPGL-----------PPTTPTYRPTTPTFIDLTYYSPTP 183
Query: 266 PALAVSSPGY-----------------SPGYSPTSPSV-----GARGG---PAAGYASPQ 370
P L SP Y SPGY+PTSP + GA PA+ S
Sbjct: 184 PILMPESPTYTPPSPRYYPASFEINLLSPGYAPTSPGIRSPTYGAPSPDLEPASSSLSLT 243
Query: 371 SPGYVPTSPAYARPGTVVAAANV----------------YSPSSPAYSPFSPNYAAA--- 493
SP Y PTSP + T + Y P+SP YSP SP +
Sbjct: 244 SPTYTPTSPHFTPTSTPYVRTSPSFYRPSGSRSPSFYRPYGPASPTYSPTSPVIPTSIGS 303
Query: 494 -------SSPAYQPPS 520
SP Y PPS
Sbjct: 304 PPINFTLGSPTYSPPS 319
Score = 60.5 bits (145), Expect = 7e-08
Identities = 50/165 (30%), Positives = 63/165 (38%), Gaps = 16/165 (9%)
Frame = +2
Query: 74 MTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYM-------- 229
+TP R +P + P + Y SPR Y+PA+P
Sbjct: 89 VTPVRRYLDPISPGLRPTTSTYTPASPR---------------YSPATPKIRSPRLTMLE 133
Query: 230 --ATSPGMGYSPSTPALAVSSPGYSPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAY 403
ATSP YSP TP A SP Y+PG PT+P+ Y PT+P +
Sbjct: 134 DGATSPR--YSPPTPHFAPRSPSYAPGLPPTTPT------------------YRPTTPTF 173
Query: 404 ARPGTVVAAANVYSPSSPAYSPFSPNYAAAS------SPAYQPPS 520
+ P SP Y+P SP Y AS SP Y P S
Sbjct: 174 IDLTYYSPTPPILMPESPTYTPPSPRYYPASFEINLLSPGYAPTS 218
[223][TOP]
>UniRef100_UPI0000DC19F8 UPI0000DC19F8 related cluster n=1 Tax=Rattus norvegicus
RepID=UPI0000DC19F8
Length = 417
Score = 69.7 bits (169), Expect = 1e-10
Identities = 64/175 (36%), Positives = 79/175 (45%), Gaps = 19/175 (10%)
Frame = +2
Query: 53 GRA--TPGR---MTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPAS 217
GRA +PGR ++PGR+P +P +P SPG A +SP G + AP S
Sbjct: 45 GRAPVSPGRRAPVSPGRAPV---SPGRAPVSPGRAPVSP--------GTVPVSPGRAPVS 93
Query: 218 PAYMATSPG------MGYSPSTPALAVSSPG---YSPGYSPTSPS---VGARGGPAAGYA 361
P SPG G +P +P A SPG SPG +P SP V P +
Sbjct: 94 PGRAPVSPGERAPVSPGRAPVSPGRAPVSPGRAPVSPGRAPVSPGRVPVSPGRAPVSPGR 153
Query: 362 SPQSPGYVPTSPAYA--RPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
+P SPG P SP A PGTV + P SP +P SP A SP P S
Sbjct: 154 APVSPGRAPVSPGRAPVSPGTVPVSPGTV-PVSPGRAPVSPGRAPV-SPGRAPVS 206
Score = 68.6 bits (166), Expect = 3e-10
Identities = 59/162 (36%), Positives = 73/162 (45%), Gaps = 13/162 (8%)
Frame = +2
Query: 74 MTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGM-- 247
++PGR+P +P +P SPG A +SP G A + AP SP + SPG
Sbjct: 184 VSPGRAPV---SPGRAPVSPGRAPVSP--------GRAPVSPGRAPVSPGTVPVSPGRAP 232
Query: 248 ---GYSPSTPALAVSSPG---YSPGYSPTSPS---VGARGGPAAGYASPQSPGYVPTSPA 400
G +P +P A SPG SPG +P SP V P + +P SPG P SP
Sbjct: 233 VSPGRAPVSPGRAPVSPGRAPVSPGRAPVSPGTVPVSPGRAPVSPGRAPVSPGRAPVSPG 292
Query: 401 YA--RPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
A PGTV + P SP P SP A SP P S
Sbjct: 293 RAPVSPGTVPVSPGTV-PVSPGTVPVSPGRAPV-SPGRAPVS 332
Score = 65.9 bits (159), Expect = 2e-09
Identities = 57/154 (37%), Positives = 70/154 (45%), Gaps = 5/154 (3%)
Frame = +2
Query: 74 MTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGY 253
++PGR+P +P +P SPG A +SP G P G AP SP SPG
Sbjct: 21 VSPGRAPV---SPGRAPVSPGRAPVSP------GRAPVS-PGRRAPVSPGRAPVSPGR-- 68
Query: 254 SPSTPALAVSSPG---YSPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYA--RPGT 418
+P +P A SPG SPG +P SP R + G +P SPG P SP A PG
Sbjct: 69 APVSPGRAPVSPGTVPVSPGRAPVSPG---RAPVSPGERAPVSPGRAPVSPGRAPVSPGR 125
Query: 419 VVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
+ +P SP P SP A SP P S
Sbjct: 126 APVSPG-RAPVSPGRVPVSPGRAPV-SPGRAPVS 157
Score = 60.1 bits (144), Expect = 9e-08
Identities = 45/115 (39%), Positives = 54/115 (46%), Gaps = 10/115 (8%)
Frame = +2
Query: 206 APASPAYMATSPGM-----GYSPSTPALAVSSPG---YSPGYSPTSPSVGARGGPAAGYA 361
AP SP + SPG G +P +P A SPG SPG +P SP R P +
Sbjct: 5 APVSPGTVPVSPGTVPVSPGRAPVSPGRAPVSPGRAPVSPGRAPVSPG---RRAPVSPGR 61
Query: 362 SPQSPGYVPTSPAYA--RPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
+P SPG P SP A PGTV + +P SP +P SP A SP P S
Sbjct: 62 APVSPGRAPVSPGRAPVSPGTVPVSPG-RAPVSPGRAPVSPGERAPVSPGRAPVS 115
[224][TOP]
>UniRef100_Q4D199 Putative uncharacterized protein n=1 Tax=Trypanosoma cruzi
RepID=Q4D199_TRYCR
Length = 320
Score = 69.7 bits (169), Expect = 1e-10
Identities = 48/147 (32%), Positives = 57/147 (38%), Gaps = 18/147 (12%)
Frame = +2
Query: 86 RSPAGRFTPRMSPASPGYAAMSPRFGGGLGG--GPAGGAGA----YAPASPAYMATSPGM 247
+S + P PGY A P +G G P G GA Y P Y A PG
Sbjct: 2 KSDGNSYPYSYGPPQPGYGAPQPGYGPPQPGYGAPQPGYGAPQPEYGSPQPGYGAPQPGY 61
Query: 248 G-----YSPSTPALAVSSPGYS---PGYSPTSPSVG----ARGGPAAGYASPQSPGYVPT 391
G Y P PGY PGY P P G G P GY PQ PGY P
Sbjct: 62 GAPQPEYGSPQPGYGAPQPGYGAPQPGYGPPQPEYGPPQPGYGAPQPGYGPPQ-PGYGPP 120
Query: 392 SPAYARPGTVVAAANVYSPSSPAYSPF 472
P Y +P + A +P+ PA + +
Sbjct: 121 QPEYGKPASGNALPYTNTPALPAQASY 147
Score = 63.2 bits (152), Expect = 1e-08
Identities = 42/113 (37%), Positives = 43/113 (38%), Gaps = 7/113 (6%)
Frame = +2
Query: 200 AYAPASPAYMATSPGMGYSPSTPALAVSSPGYS---PGYSPTSPSVGAR----GGPAAGY 358
+Y P P Y A PG Y P P PGY P Y P GA G P Y
Sbjct: 11 SYGPPQPGYGAPQPG--YGPPQPGYGAPQPGYGAPQPEYGSPQPGYGAPQPGYGAPQPEY 68
Query: 359 ASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPP 517
SPQ PGY P Y P Y P P Y P P Y A P Y PP
Sbjct: 69 GSPQ-PGYGAPQPGYGAPQPG------YGPPQPEYGPPQPGY-GAPQPGYGPP 113
[225][TOP]
>UniRef100_Q16EB2 Putative uncharacterized protein n=1 Tax=Aedes aegypti
RepID=Q16EB2_AEDAE
Length = 795
Score = 68.9 bits (167), Expect = 2e-10
Identities = 54/175 (30%), Positives = 79/175 (45%), Gaps = 17/175 (9%)
Frame = +2
Query: 35 SSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPA 214
+ ++ G PG P A + +PA+P Y A + G A GA PA
Sbjct: 213 AKSEDGGVVQPGYGAPAAPAAPAYGSHAAPAAPDYGAHAAPAAPAYGAPAAPAYGA--PA 270
Query: 215 SPAYMATSP---GMGYSPSTPAL-AVSSPGYSPGYSPTSPSVGARGGPAA-GYASPQSPG 379
+PAY A + G +P+ PA A ++P Y +P +P+ GA PA Y + +P
Sbjct: 271 APAYGAPAAPAYGAHATPAAPAYGAHAAPAYGSHAAPAAPAYGAHAAPAVPAYGAHAAPA 330
Query: 380 Y----VPTSPAY---ARPGTVVAAANVY----SPSSPAYSPF-SPNYAAASSPAY 508
Y P +PAY A PG AA+ Y +P+ P Y +P Y A ++P Y
Sbjct: 331 YGAHAAPAAPAYGAHAGPGCATHAASAYGAHIAPAGPIYGAHAAPAYGAHAAPVY 385
Score = 58.5 bits (140), Expect = 3e-07
Identities = 40/123 (32%), Positives = 57/123 (46%), Gaps = 13/123 (10%)
Frame = +2
Query: 179 GPAG----GAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSPGYSPTSPSVGARGGP 346
GP G Y PA + GY + V PGY +P +P+ G+ P
Sbjct: 183 GPTGIHCDNCHIYHGDKPAEAKSEGSEGYGAKSEDGGVVQPGYGAPAAPAAPAYGSHAAP 242
Query: 347 AA----GYASPQSPGY-VPTSPAYARPGTVVAAANVYSPSSPAY----SPFSPNYAAASS 499
AA +A+P +P Y P +PAY P AA +P++PAY +P +P Y A ++
Sbjct: 243 AAPDYGAHAAPAAPAYGAPAAPAYGAP----AAPAYGAPAAPAYGAHATPAAPAYGAHAA 298
Query: 500 PAY 508
PAY
Sbjct: 299 PAY 301
[226][TOP]
>UniRef100_UPI00017932FD PREDICTED: similar to Cuticular protein 76Bd CG9299-PB n=1
Tax=Acyrthosiphon pisum RepID=UPI00017932FD
Length = 670
Score = 68.6 bits (166), Expect = 3e-10
Identities = 65/192 (33%), Positives = 87/192 (45%), Gaps = 19/192 (9%)
Frame = +2
Query: 8 ATASFSPIMSSADAAGRATPGRMTPG-RSPAG-RFTP-RMSPASPGYAAMSPRFGGGLGG 178
+++S+S SA A A P P SPA +++P S A+P YA P +
Sbjct: 239 SSSSYSSSSYSAPAVSYAVP---EPNYASPAAPKYSPVSYSTAAPSYAVPEPVYA----- 290
Query: 179 GPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYS----PGYSPTSPSVGARGG- 343
+PA+P Y S YS + P+ AV P Y+ P YSP S S A
Sbjct: 291 ---------SPAAPKYSPVS----YSTAAPSYAVPEPVYASPAAPKYSPVSYSTPAPSYA 337
Query: 344 -PAAGYASPQSPGYVPTS-----PAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASS-- 499
P YASP +P Y P S P+YA P V A+A YS +P Y P S N ++SS
Sbjct: 338 VPEPVYASPAAPKYSPVSYSTPAPSYAVPEPVYASAPKYSTPAPKYQPSSYNSYSSSSYK 397
Query: 500 ---PAYQPPSRR 526
P Y P+ +
Sbjct: 398 AAKPEYSAPAHK 409
Score = 67.0 bits (162), Expect = 8e-10
Identities = 60/190 (31%), Positives = 84/190 (44%), Gaps = 20/190 (10%)
Frame = +2
Query: 11 TASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAG 190
+A P S A AA ++ TP S A P S AS Y+ P++ +
Sbjct: 147 SAPAKPAYSPAPAA-YSSSSYSTPAPSYAVP-NPSYSSASASYS--QPKYSPSSYSSSSY 202
Query: 191 GAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYS-PGYSPTSPSVGARGGPAAGYA-- 361
+ +Y+ A+P+Y P YSP+ ++ S P YS P YS +S S + PA YA
Sbjct: 203 SSSSYSTAAPSYAV--PSQSYSPAP--VSYSQPKYSAPSYSSSSYSSSSYSAPAVSYAVP 258
Query: 362 -----SPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFS------------PNYAA 490
SP +P Y P S + A P V SP++P YSP S P YA+
Sbjct: 259 EPNYASPAAPKYSPVSYSTAAPSYAVPEPVYASPAAPKYSPVSYSTAAPSYAVPEPVYAS 318
Query: 491 ASSPAYQPPS 520
++P Y P S
Sbjct: 319 PAAPKYSPVS 328
Score = 66.2 bits (160), Expect = 1e-09
Identities = 66/196 (33%), Positives = 87/196 (44%), Gaps = 27/196 (13%)
Frame = +2
Query: 14 ASFSPIMSSADAAGRATPGRMTPGRS----PAGRFTPRMSPASPGYAAMSPRFGGGLGGG 181
+S+S S+ + A P P +S P P+ S +P Y++ S +
Sbjct: 195 SSYSSSSYSSSSYSTAAPSYAVPSQSYSPAPVSYSQPKYS--APSYSSSS--YSSSSYSA 250
Query: 182 PAGGAGAYAP--ASPAYMATSPGMGYSPSTPALAVSSPGYS----PGYSPTSPSVGARGG 343
PA P ASPA SP + YS + P+ AV P Y+ P YSP S S A
Sbjct: 251 PAVSYAVPEPNYASPAAPKYSP-VSYSTAAPSYAVPEPVYASPAAPKYSPVSYSTAAPSY 309
Query: 344 --PAAGYASPQSPGYVPTS-----PAYARPGTVVAAANVYSPSSPAYSPFS-----PNYA 487
P YASP +P Y P S P+YA P V A SP++P YSP S P+YA
Sbjct: 310 AVPEPVYASPAAPKYSPVSYSTPAPSYAVPEPVYA-----SPAAPKYSPVSYSTPAPSYA 364
Query: 488 A-----ASSPAYQPPS 520
AS+P Y P+
Sbjct: 365 VPEPVYASAPKYSTPA 380
Score = 62.0 bits (149), Expect = 2e-08
Identities = 60/200 (30%), Positives = 82/200 (41%), Gaps = 29/200 (14%)
Frame = +2
Query: 8 ATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPA 187
A A++S S A A P S A P+ SP+S ++ S A
Sbjct: 157 APAAYSSSSYSTPAPSYAVPNPSYSSAS-ASYSQPKYSPSSYSSSSYSSSSYSTAAPSYA 215
Query: 188 GGAGAYAPA----------SPAYMATS-PGMGYSPSTPALAVSSPGYS----PGYSPTSP 322
+ +Y+PA +P+Y ++S YS + AV P Y+ P YSP S
Sbjct: 216 VPSQSYSPAPVSYSQPKYSAPSYSSSSYSSSSYSAPAVSYAVPEPNYASPAAPKYSPVSY 275
Query: 323 SVGARGG--PAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFS------- 475
S A P YASP +P Y P S + A P V SP++P YSP S
Sbjct: 276 STAAPSYAVPEPVYASPAAPKYSPVSYSTAAPSYAVPEPVYASPAAPKYSPVSYSTPAPS 335
Query: 476 -----PNYAAASSPAYQPPS 520
P YA+ ++P Y P S
Sbjct: 336 YAVPEPVYASPAAPKYSPVS 355
Score = 62.0 bits (149), Expect = 2e-08
Identities = 47/143 (32%), Positives = 69/143 (48%), Gaps = 1/143 (0%)
Frame = +2
Query: 80 PGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSP 259
P SPA + + S +S A SP G A Y+ A+P+Y A S S
Sbjct: 451 PAYSPAAYTSSKQSYSSAPIAVYSPV-------ASYGPAPEYS-AAPSYSAPSYSASQSY 502
Query: 260 STPALAVSSPGY-SPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVAAAN 436
+ + + ++P Y SP Y+P A PAA +P +P Y P +P+YA AA
Sbjct: 503 QSASYSAAAPSYPSPSYAPAPAPAYA---PAAQSYAPAAPSYAPAAPSYA------PAAP 553
Query: 437 VYSPSSPAYSPFSPNYAAASSPA 505
Y+P++PAY P + +YA A + A
Sbjct: 554 SYAPAAPAYGPAAQSYAPAKTYA 576
Score = 61.2 bits (147), Expect = 4e-08
Identities = 54/178 (30%), Positives = 78/178 (43%), Gaps = 8/178 (4%)
Frame = +2
Query: 14 ASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGG 193
A F P S +AA + P P S P S +P Y+A S + P+
Sbjct: 59 AYFKP---SYEAASYSAPSYSAPSYSAPSYSAPSYS--APSYSAAS--YSSASYSAPSYS 111
Query: 194 AGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSPGYSPTSPSVGARGGPA--AGYASP 367
A +YA P+Y SPSTP SSP Y+ Y P + A PA A+
Sbjct: 112 AQSYAVPDPSYA--------SPSTPKY--SSPSYTNNYKPAKAAYSAPAKPAYSPAPAAY 161
Query: 368 QSPGYVPTSPAYARPGTVVAAANV------YSPSSPAYSPFSPNYAAASSPAYQPPSR 523
S Y +P+YA P ++A+ YSPSS + S +S + + ++P+Y PS+
Sbjct: 162 SSSSYSTPAPSYAVPNPSYSSASASYSQPKYSPSSYSSSSYSSSSYSTAAPSYAVPSQ 219
Score = 61.2 bits (147), Expect = 4e-08
Identities = 44/150 (29%), Positives = 68/150 (45%), Gaps = 12/150 (8%)
Frame = +2
Query: 110 PRMSPASPGYAAMSPRFGG--GLGGGPAGGAGAYAPASPAYMAT-----SPGMGYSPS-- 262
P+ Y +P + PA AY + +Y + SP Y P+
Sbjct: 425 PKCDEHEQEYVTKAPSYDSKQSYAPAPAYSPAAYTSSKQSYSSAPIAVYSPVASYGPAPE 484
Query: 263 -TPALAVSSPGYSPG--YSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVAAA 433
+ A + S+P YS Y S S A P+ YA +P Y P + +YA AA
Sbjct: 485 YSAAPSYSAPSYSASQSYQSASYSAAAPSYPSPSYAPAPAPAYAPAAQSYA------PAA 538
Query: 434 NVYSPSSPAYSPFSPNYAAASSPAYQPPSR 523
Y+P++P+Y+P +P+YA A +PAY P ++
Sbjct: 539 PSYAPAAPSYAPAAPSYAPA-APAYGPAAQ 567
Score = 60.1 bits (144), Expect = 9e-08
Identities = 52/178 (29%), Positives = 80/178 (44%), Gaps = 22/178 (12%)
Frame = +2
Query: 53 GRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMA 232
G + P + P +S + +PA+P A P + P+ A +Y+ +P+Y A
Sbjct: 30 GCSHPPKYGPSKSDYTQSLVSYAPAAPKPAYFKPSYEAASYSAPSYSAPSYS--APSYSA 87
Query: 233 TSPGMGYSPSTPALAVSSPGYS-PGYSPTSPSVGARGGPAAGYASPQSPGY--------- 382
S +PS A + SS YS P YS S +V P YASP +P Y
Sbjct: 88 PSYS---APSYSAASYSSASYSAPSYSAQSYAV-----PDPSYASPSTPKYSSPSYTNNY 139
Query: 383 --------VPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASS----PAYQPPS 520
P PAY+ P +++ YS +P+Y+ +P+Y++AS+ P Y P S
Sbjct: 140 KPAKAAYSAPAKPAYS-PAPAAYSSSSYSTPAPSYAVPNPSYSSASASYSQPKYSPSS 196
[227][TOP]
>UniRef100_Q1WKU0 Putative RNA polymerase II 215 kD subunit (Fragment) n=2
Tax=melanogaster subgroup RepID=Q1WKU0_DROYA
Length = 766
Score = 68.6 bits (166), Expect = 3e-10
Identities = 60/146 (41%), Positives = 69/146 (47%), Gaps = 9/146 (6%)
Frame = +2
Query: 98 GRFTPRMSPA-SPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYM--ATSPGMGYSPS-T 265
G TP M+P +P +PR+ P G A P P++ A S G SPS +
Sbjct: 638 GGSTPSMTPPMTPWVNCNTPRYFS-----PPGHVSAMTPGGPSFSPSAASDASGMSPSWS 692
Query: 266 PALAVSSPGYSPG-----YSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVAA 430
PA SSP SPG Y P SPSV SP Y PTSP Y A+
Sbjct: 693 PAHPGSSPS-SPGPSMSPYFPASPSV--------------SPSYSPTSPNYTASSPGGAS 737
Query: 431 ANVYSPSSPAYSPFSPNYAAASSPAY 508
N YSPSSP YSP SP YA+A SP Y
Sbjct: 738 PN-YSPSSPNYSPTSPLYASA-SPRY 761
Score = 68.6 bits (166), Expect = 3e-10
Identities = 50/124 (40%), Positives = 62/124 (50%), Gaps = 6/124 (4%)
Frame = +2
Query: 53 GRATPGRMTPGRSP-AGRFTPRMSPASPGYAAMSP---RFGGGLGGGPAGGAGAYAPASP 220
G +TP MTP +P TPR +AM+P F +G + +++PA P
Sbjct: 638 GGSTPS-MTPPMTPWVNCNTPRYFSPPGHVSAMTPGGPSFSPSAASDASGMSPSWSPAHP 696
Query: 221 AYMATSPGMGYSPSTPALAVSSPGYSPGYSPTSPSVGAR--GGPAAGYASPQSPGYVPTS 394
+SPG SP PA SP SP YSPTSP+ A GG + Y SP SP Y PTS
Sbjct: 697 GSSPSSPGPSMSPYFPA----SPSVSPSYSPTSPNYTASSPGGASPNY-SPSSPNYSPTS 751
Query: 395 PAYA 406
P YA
Sbjct: 752 PLYA 755
[228][TOP]
>UniRef100_C6F0A3 RNA polymerase II (Fragment) n=1 Tax=Plasmodium falciparum
RepID=C6F0A3_PLAFA
Length = 195
Score = 68.6 bits (166), Expect = 3e-10
Identities = 49/130 (37%), Positives = 60/130 (46%), Gaps = 6/130 (4%)
Frame = +2
Query: 107 TPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSS 286
+P S SP Y+ SP+ Y+P SP Y TSP YSP++P + +S
Sbjct: 37 SPVYSVTSPKYSPTSPK---------------YSPTSPKYSPTSPK--YSPTSPKYSPTS 79
Query: 287 PGYSPG---YSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVV---AAANVYSP 448
P YSP YSPTSP P S SP + PTSPAY+ V N + P
Sbjct: 80 PKYSPTSPKYSPTSPVAQNIASPNYSPYSITSPKFSPTSPAYSISSPVYDKSGVVNAHQP 139
Query: 449 SSPAYSPFSP 478
SPAY SP
Sbjct: 140 MSPAYILQSP 149
Score = 67.4 bits (163), Expect = 6e-10
Identities = 48/110 (43%), Positives = 58/110 (52%), Gaps = 8/110 (7%)
Frame = +2
Query: 203 YAPASPAYMATSPGMGYSPSTPALAVSSPGYSPG---YSPTSPSVGARGGPAAGYASPQS 373
Y SP Y TSP YSP++P + +SP YSP YSPTSP SP S
Sbjct: 33 YNVMSPVYSVTSPK--YSPTSPKYSPTSPKYSPTSPKYSPTSPKY-----------SPTS 79
Query: 374 PGYVPTSPAYARPGTV---VAAANV--YSPSSPAYSPFSPNYAAASSPAY 508
P Y PTSP Y+ V +A+ N YS +SP +SP SP Y + SSP Y
Sbjct: 80 PKYSPTSPKYSPTSPVAQNIASPNYSPYSITSPKFSPTSPAY-SISSPVY 128
Score = 65.5 bits (158), Expect = 2e-09
Identities = 48/120 (40%), Positives = 57/120 (47%), Gaps = 14/120 (11%)
Frame = +2
Query: 203 YAPASPAYMATSPGMGYSPSTPA-----------LAVSSPGYS---PGYSPTSPSVGARG 340
Y+P SP Y A + YSP++P V SP YS P YSPTSP
Sbjct: 1 YSPTSPTYNANNAY--YSPTSPKNQNDQMNVNSQYNVMSPVYSVTSPKYSPTSPKYS--- 55
Query: 341 GPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
P + SP SP Y PTSP Y+ + YSP+SP YSP SP +SP Y P S
Sbjct: 56 -PTSPKYSPTSPKYSPTSPKYS------PTSPKYSPTSPKYSPTSPVAQNIASPNYSPYS 108
[229][TOP]
>UniRef100_C6F1F5 RNA polymerase II (Fragment) n=1 Tax=Plasmodium fragile
RepID=C6F1F5_PLAFR
Length = 210
Score = 67.8 bits (164), Expect = 4e-10
Identities = 55/152 (36%), Positives = 67/152 (44%), Gaps = 22/152 (14%)
Frame = +2
Query: 119 SPASPGYAAMSPRFGGGLGG-----------GPAGGAGAYAP--------ASPAYMATSP 241
SP SP Y + GG G P G P SP Y TSP
Sbjct: 2 SPTSPTYHLSNNANAGGSAGLNDPKSFYSPTSPTNQLGEMNPNMMKYHSVVSPVYSVTSP 61
Query: 242 GMGYSPSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARP 412
YSP++P + +SP Y SP YSPTSP P + SP SP Y PTSP P
Sbjct: 62 K--YSPTSPKYSPTSPQYMPTSPKYSPTSPKYS----PTSPKYSPTSPQYSPTSPIPNNP 115
Query: 413 GTVVAAANVYSPSSPAYSPFSPNYAAASSPAY 508
+ + Y+ +SP +SP SP Y + SSP Y
Sbjct: 116 SS--PHYSPYAIASPKFSPTSPAY-SISSPVY 144
Score = 67.4 bits (163), Expect = 6e-10
Identities = 57/163 (34%), Positives = 75/163 (46%), Gaps = 15/163 (9%)
Frame = +2
Query: 35 SSADAAGRATPGRMTPGRSPA---GRFTPRM----SPASPGYAAMSPRFGGGLGGGPAGG 193
++ +AG P SP G P M S SP Y+ SP++ +
Sbjct: 15 NAGGSAGLNDPKSFYSPTSPTNQLGEMNPNMMKYHSVVSPVYSVTSPKY--------SPT 66
Query: 194 AGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSPG---YSPTSPSVGARGGPAAGYAS 364
+ Y+P SP YM TSP YSP++P + +SP YSP YSPTSP P +
Sbjct: 67 SPKYSPTSPQYMPTSPK--YSPTSPKYSPTSPKYSPTSPQYSPTSPIPNNPSSPHYSPYA 124
Query: 365 PQSPGYVPTSPAYARPGTVV-AAANVYS----PSSPAYSPFSP 478
SP + PTSPAY+ V +AN + P SPAY SP
Sbjct: 125 IASPKFSPTSPAYSISSPVYDRSANARNKNQHPLSPAYILQSP 167
Score = 63.2 bits (152), Expect = 1e-08
Identities = 51/140 (36%), Positives = 60/140 (42%), Gaps = 14/140 (10%)
Frame = +2
Query: 137 YAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPAL----AVSSPGYS-- 298
Y+ SP + G AG P S Y TSP P + +V SP YS
Sbjct: 1 YSPTSPTYHLSNNANAGGSAGLNDPKS-FYSPTSPTNQLGEMNPNMMKYHSVVSPVYSVT 59
Query: 299 -PGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFS 475
P YSPTSP SP SP Y+PTSP Y+ + YSP+SP YSP S
Sbjct: 60 SPKYSPTSPKY-----------SPTSPQYMPTSPKYS------PTSPKYSPTSPKYSPTS 102
Query: 476 PNYAAA-------SSPAYQP 514
P Y+ SSP Y P
Sbjct: 103 PQYSPTSPIPNNPSSPHYSP 122
[230][TOP]
>UniRef100_B5DKF7 GA22863 n=1 Tax=Drosophila pseudoobscura pseudoobscura
RepID=B5DKF7_DROPS
Length = 610
Score = 67.8 bits (164), Expect = 4e-10
Identities = 45/140 (32%), Positives = 77/140 (55%), Gaps = 6/140 (4%)
Frame = +2
Query: 119 SPASPGYAA-MSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 295
+PA+P Y+A SP + A A +Y+ +Y +T+P +P++ A ++P Y
Sbjct: 215 APAAPSYSAPASPNYS-------APAAQSYSEPKSSYSSTAPSSYSAPASSYSAPAAPSY 267
Query: 296 SPGYSPT--SPSVGARGGPAA-GYASPQSPGY-VPTSPAYARPGTVVAAANVYSPSSPAY 463
S +P+ +P+ + PAA Y++P +P Y P +P+Y+RP AA N P P Y
Sbjct: 268 SAPAAPSYKAPAAPSYSTPAAQSYSAPAAPNYSAPAAPSYSRP----AAPNYAPPPVPTY 323
Query: 464 S-PFSPNYAAASSPAYQPPS 520
S P +P+Y+A ++ +Y P+
Sbjct: 324 SAPAAPSYSAPAAQSYSAPA 343
Score = 67.4 bits (163), Expect = 6e-10
Identities = 46/142 (32%), Positives = 70/142 (49%), Gaps = 6/142 (4%)
Frame = +2
Query: 113 RMSPASPGYAAMSPRFGGGLGGGPAGGAGAY-APASPAYMATSPGMGYSPSTPALAVSSP 289
R S P A +P A A +Y APA+P+Y + +P+ P+ + P
Sbjct: 48 RSSSGIPAQAYAAPVIYNSQSSYSAPAAPSYSAPATPSYSGPAAPNYSAPAAPSYSAPKP 107
Query: 290 GYSPGYSPTS--PSVGARGGPAA-GYASPQSPGY-VPTSPAYARPGTVVAAANVYSPSSP 457
YS +PT P+V + PA Y++P +P Y P + +Y+ P AA N +P++P
Sbjct: 108 SYSSSAAPTYSLPAVPSYSAPATPSYSAPAAPSYSTPAAQSYSAP----AAPNYSAPAAP 163
Query: 458 AYS-PFSPNYAAASSPAYQPPS 520
+YS P +PNYA P Y P+
Sbjct: 164 SYSRPAAPNYAPPPVPTYSAPA 185
Score = 62.4 bits (150), Expect = 2e-08
Identities = 57/195 (29%), Positives = 97/195 (49%), Gaps = 25/195 (12%)
Frame = +2
Query: 11 TASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAA-MSPRFGGG-LGGGP 184
+A +P S+ A +TP + A ++ +PA+P Y+ +P + +
Sbjct: 126 SAPATPSYSAPAAPSYSTPAAQSYSAPAAPNYS---APAAPSYSRPAAPNYAPPPVPTYS 182
Query: 185 AGGAGAY-APASPAYMATSPGMGYSPSTP---ALAV------SSPGYS-----------P 301
A A +Y APA+P+Y A + +P++P A A +SP YS
Sbjct: 183 APAAPSYSAPAAPSYSAPAAQSYSAPASPSYSAPAAPSYSAPASPNYSAPAAQSYSEPKS 242
Query: 302 GYSPTSPSVGARGGPAAGYASPQSPGY-VPTSPAYARPGTVVAAANVYSPSSPAYS-PFS 475
YS T+PS + PA+ Y++P +P Y P +P+Y P AA + +P++ +YS P +
Sbjct: 243 SYSSTAPS--SYSAPASSYSAPAAPSYSAPAAPSYKAP----AAPSYSTPAAQSYSAPAA 296
Query: 476 PNYAAASSPAYQPPS 520
PNY+A ++P+Y P+
Sbjct: 297 PNYSAPAAPSYSRPA 311
Score = 54.7 bits (130), Expect = 4e-06
Identities = 44/172 (25%), Positives = 80/172 (46%), Gaps = 7/172 (4%)
Frame = +2
Query: 26 PIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGG--LGGGPAGGAG 199
P S+ A + P + A ++ +PASP Y+A + + A
Sbjct: 321 PTYSAPAAPSYSAPAAQSYSAPAAPSYS---APASPNYSAPAAQSYSTPTAQSYSTPTAQ 377
Query: 200 AYAPASPAYMATSPGMGYSPSTPALAVSSPGYSPGYSPTSPSVGARGGPAAGYASPQSPG 379
+Y+ +Y +T+P +P++ A ++P YS +P +PS A P +PQS
Sbjct: 378 SYSAPKSSYSSTAPSSYSAPASSYSAPAAPSYS---APAAPSYKAPAAPTYSAPAPQSYS 434
Query: 380 YVPTSPAYARPG----TVVAAANVYSPSSPAYS-PFSPNYAAASSPAYQPPS 520
P + Y+ P + AA + +P++P+YS P +P+Y+A + +Y P+
Sbjct: 435 -APAAQTYSTPAAPSNSAPAAPSYSAPAAPSYSAPAAPSYSAPAGQSYSAPA 485
[231][TOP]
>UniRef100_UPI000051A44B PREDICTED: similar to K06A9.1b n=1 Tax=Apis mellifera
RepID=UPI000051A44B
Length = 2422
Score = 67.0 bits (162), Expect = 8e-10
Identities = 61/177 (34%), Positives = 75/177 (42%), Gaps = 13/177 (7%)
Frame = +2
Query: 23 SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSP------ASPGYAAMSPRFGGGLGGGP 184
SP A + PG + P P G P P + PGY A P G G P
Sbjct: 1988 SPTSGPGYVAPTSGPGYVAPTSGP-GYVAPTSGPGYVAPTSGPGYVA--PTSGPGYVA-P 2043
Query: 185 AGGAGAYAPAS-PAYMATSPGMGYSPSTPALAVSSPGYSPGY-SPTSPS--VGARGGPAA 352
G G AP S P Y+A + G GY ST +P PGY +PTS V + GP
Sbjct: 2044 TSGPGYVAPTSGPGYVAPTSGPGYVASTSGPGYVAPTSGPGYVAPTSGPGYVASTSGP-- 2101
Query: 353 GYASPQS-PGYVPTSPAYARPGTVVAAANVYSPSSPAY--SPFSPNYAAASSPAYQP 514
GY +P S PGYV ++ + V S P Y S P Y A++S A QP
Sbjct: 2102 GYVAPTSGPGYVASTSGPGYVASTSGPGYVAPTSGPGYVASTSGPGYVASTSSAIQP 2158
[232][TOP]
>UniRef100_A7SGI0 Predicted protein (Fragment) n=1 Tax=Nematostella vectensis
RepID=A7SGI0_NEMVE
Length = 385
Score = 67.0 bits (162), Expect = 8e-10
Identities = 61/167 (36%), Positives = 67/167 (40%), Gaps = 10/167 (5%)
Frame = +2
Query: 56 RATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAY----APASPA 223
R+ GR RSP GRF SP P Y+ SPR G P G + +P P
Sbjct: 183 RSPRGRFYSPRSPRGRFYSPRSPRGPFYSPRSPR---GRFYSPHSPLGPFYSPRSPRGPF 239
Query: 224 YMATSP-GMGYSPSTPALAVSSP--GYSPGYSPTSPSVGARGGPAAGYASPQSPGYVPTS 394
Y SP G YSP +P SP P YSP SP GP SP+ P Y P S
Sbjct: 240 YSPHSPRGRFYSPHSPRGPFYSPRSPRGPFYSPRSPR-----GPFYSPRSPRGPLYSPLS 294
Query: 395 PAYARPGTVVAAANVYSPSS---PAYSPFSPNYAAASSPAYQPPSRR 526
P YSP S P YSP SP P Y P S R
Sbjct: 295 PRGPFYSPRSPRGPFYSPRSPRGPLYSPLSPR-----GPLYSPRSPR 336
Score = 65.1 bits (157), Expect = 3e-09
Identities = 60/169 (35%), Positives = 69/169 (40%), Gaps = 12/169 (7%)
Frame = +2
Query: 56 RATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGA-GAYAPASPAYMA 232
R+ G RSP GRF SP P Y+ SPR P G ++P P Y
Sbjct: 203 RSPRGPFYSPRSPRGRFYSPHSPLGPFYSPRSPRGPFYSPHSPRGRFYSPHSPRGPFYSP 262
Query: 233 TSP-GMGYSPSTPALAVSSPGYSPG--YSPTSP-----SVGARGGPAAGYASPQSPGYVP 388
SP G YSP +P SP G YSP SP S + GP SP+ P Y P
Sbjct: 263 RSPRGPFYSPRSPRGPFYSPRSPRGPLYSPLSPRGPFYSPRSPRGPFYSPRSPRGPLYSP 322
Query: 389 TSPAYARPGTVVAAANVYSPSSPA---YSPFSPNYAAASSPAYQPPSRR 526
SP ++YSP SP YSP SP P Y P S R
Sbjct: 323 LSPRGPLYSPRSPRGSLYSPQSPRGPFYSPHSPR-----RPIYSPHSPR 366
Score = 63.9 bits (154), Expect = 6e-09
Identities = 62/172 (36%), Positives = 70/172 (40%), Gaps = 15/172 (8%)
Frame = +2
Query: 56 RATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAY----APASPA 223
R+ G RSP GRF SP P Y+ SPR G P G + +P P
Sbjct: 53 RSPRGPFYSPRSPRGRFYSPRSPRGPFYSPHSPR---GPFYSPHSPRGPFYSPRSPRGPF 109
Query: 224 YMATSP-GMGYSPSTPALAVSSPGYSPG--YSPTSPSVGARGGPAAGYASPQSPGYVPTS 394
Y SP G YSP +P + SP G YSP SP GP SP+ P Y P S
Sbjct: 110 YSPLSPRGPFYSPRSPRGPLYSPRSPRGALYSPRSPR-----GPFCSPRSPRGPFYSPRS 164
Query: 395 PAYARPGTVVAAANVYSPSSPA---YSPFSPN---YAAAS--SPAYQPPSRR 526
P YSP SP YSP SP Y+ S P Y P S R
Sbjct: 165 PRGPFYSPHSPRGRFYSPRSPRGRFYSPRSPRGRFYSPRSPRGPFYSPRSPR 216
Score = 60.8 bits (146), Expect = 5e-08
Identities = 60/172 (34%), Positives = 67/172 (38%), Gaps = 15/172 (8%)
Frame = +2
Query: 56 RATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAY----APASPA 223
R+ G SP GRF SP P Y+ SPR G P G + +P P
Sbjct: 3 RSPRGPFYSPHSPRGRFYSPRSPRGPFYSPRSPR---GPFYSPHSPRGPFYSPRSPRGPF 59
Query: 224 YMATSP-GMGYSPSTPALAVSSP--GYSPGYSPTSPSVGARGGPAAGYASPQSPGYVPTS 394
Y SP G YSP +P SP P YSP SP GP SP+ P Y P S
Sbjct: 60 YSPRSPRGRFYSPRSPRGPFYSPHSPRGPFYSPHSPR-----GPFYSPRSPRGPFYSPLS 114
Query: 395 PAYARPGTVVAAANVYSPSSP---AYSPFSPNYAAAS-----SPAYQPPSRR 526
P +YSP SP YSP SP S P Y P S R
Sbjct: 115 PRGPFYSPRSPRGPLYSPRSPRGALYSPRSPRGPFCSPRSPRGPFYSPRSPR 166
Score = 57.0 bits (136), Expect = 8e-07
Identities = 57/165 (34%), Positives = 64/165 (38%), Gaps = 10/165 (6%)
Frame = +2
Query: 56 RATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAY----APASPA 223
R+ G SP GRF SP P Y+ SPR G P G + +P P
Sbjct: 233 RSPRGPFYSPHSPRGRFYSPHSPRGPFYSPRSPR---GPFYSPRSPRGPFYSPRSPRGPL 289
Query: 224 YMATSP-GMGYSPSTPALAVSSPGYSPG--YSPTSPSVGARGGPAAGYASPQSPGYVPTS 394
Y SP G YSP +P SP G YSP SP GP SP+ Y P S
Sbjct: 290 YSPLSPRGPFYSPRSPRGPFYSPRSPRGPLYSPLSPR-----GPLYSPRSPRGSLYSPQS 344
Query: 395 PAYARPGTVVAAANVYSPSSPA---YSPFSPNYAAASSPAYQPPS 520
P +YSP SP YSP SP P Y P S
Sbjct: 345 PRGPFYSPHSPRRPIYSPHSPRRPFYSPRSP-----LGPFYSPRS 384
[233][TOP]
>UniRef100_UPI00016DFC5D UPI00016DFC5D related cluster n=1 Tax=Takifugu rubripes
RepID=UPI00016DFC5D
Length = 608
Score = 66.6 bits (161), Expect = 1e-09
Identities = 59/158 (37%), Positives = 68/158 (43%), Gaps = 16/158 (10%)
Frame = +2
Query: 53 GRATPGRMTPGR---SPAGRFTPRMSPA---------SPGYAAMSPRFGGGLGGGPAGGA 196
G +PG +PG SP G P SP SPG A SP GG GGP+ G
Sbjct: 2 GGPSPGGPSPGGPSWSPGG---PAQSPGGLGRSPGGPSPGGQARSP--GGPSPGGPSPGG 56
Query: 197 GAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSPGYSPTSPSVGAR--GGPAAGYASPQ 370
A +P PA + G+G SP PA + G SPG SP R GGP+ G SP
Sbjct: 57 PARSPGGPA--RSPGGLGRSPGGPAQSPGGLGRSPGGPAQSPGGLGRSPGGPSPGGPSPG 114
Query: 371 SP--GYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSP 478
P G SP PG + SP PA SP P
Sbjct: 115 GPSSGGPARSPGGPSPGGPARSPGGPSPGGPARSPGGP 152
Score = 66.2 bits (160), Expect = 1e-09
Identities = 67/182 (36%), Positives = 78/182 (42%), Gaps = 23/182 (12%)
Frame = +2
Query: 41 ADAAGRATPGRMTPG---RSPAGRFTPRMSPA----SPGYAAMSPRFGGGLG---GGPA- 187
A + G +PG +PG RSP G P SP SPG A SP GGLG GGPA
Sbjct: 41 ARSPGGPSPGGPSPGGPARSPGG---PARSPGGLGRSPGGPAQSP---GGLGRSPGGPAQ 94
Query: 188 --GGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSPGYSPTSPSVGARGGPAAGYA 361
GG G +P P+ SPG PS+ A S G SPG SP + GGPA
Sbjct: 95 SPGGLGR-SPGGPSPGGPSPG---GPSSGGPARSPGGPSPGGPARSPGGPSPGGPARSPG 150
Query: 362 SP-QSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSP---------FSPNYAAASSPAYQ 511
P +SPG + PG SP PA SP SP ++ PA
Sbjct: 151 GPARSPGGPSSGGLGRSPGGPSPGGPARSPGGPARSPGGPSSGGPARSPGGPSSGGPARS 210
Query: 512 PP 517
PP
Sbjct: 211 PP 212
Score = 64.3 bits (155), Expect = 5e-09
Identities = 50/137 (36%), Positives = 61/137 (44%), Gaps = 5/137 (3%)
Frame = +2
Query: 53 GRATPGRMTPGRSPAGRFTPRMSPA--SPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAY 226
G +PG +PG +G P SP SPG A SP GGP+ G A +P PA
Sbjct: 104 GGPSPGGPSPGGPSSGG--PARSPGGPSPGGPARSP-------GGPSPGGPARSPGGPAR 154
Query: 227 MATSP---GMGYSPSTPALAVSSPGYSPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSP 397
P G+G SP P+ P SPG SP + GGPA P S G + P
Sbjct: 155 SPGGPSSGGLGRSPGGPS--PGGPARSPGGPARSPGGPSSGGPARSPGGPSSGGPARSPP 212
Query: 398 AYARPGTVVAAANVYSP 448
A P V+A A +SP
Sbjct: 213 GGAGPSGVLAPAACWSP 229
Score = 60.5 bits (145), Expect = 7e-08
Identities = 59/150 (39%), Positives = 67/150 (44%), Gaps = 10/150 (6%)
Frame = +2
Query: 62 TPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPA------SPA 223
+PG + GRSP G +P SPG P GG GGPA G A + SP
Sbjct: 24 SPGGL--GRSPGGP-SPGGQARSPG----GPSPGGPSPGGPARSPGGPARSPGGLGRSPG 76
Query: 224 YMATSP-GMGYSPSTPALAVSSPGYSP-GYSPTSPSVG--ARGGPAAGYASPQSPGYVPT 391
A SP G+G SP PA + G SP G SP PS G + GGPA P SPG
Sbjct: 77 GPAQSPGGLGRSPGGPAQSPGGLGRSPGGPSPGGPSPGGPSSGGPARSPGGP-SPGGPAR 135
Query: 392 SPAYARPGTVVAAANVYSPSSPAYSPFSPN 481
SP PG SP PA SP P+
Sbjct: 136 SPGGPSPG-----GPARSPGGPARSPGGPS 160
[234][TOP]
>UniRef100_UPI00016DFC5C UPI00016DFC5C related cluster n=1 Tax=Takifugu rubripes
RepID=UPI00016DFC5C
Length = 579
Score = 66.6 bits (161), Expect = 1e-09
Identities = 59/158 (37%), Positives = 68/158 (43%), Gaps = 16/158 (10%)
Frame = +2
Query: 53 GRATPGRMTPGR---SPAGRFTPRMSPA---------SPGYAAMSPRFGGGLGGGPAGGA 196
G +PG +PG SP G P SP SPG A SP GG GGP+ G
Sbjct: 43 GGPSPGGPSPGGPSWSPGG---PAQSPGGLGRSPGGPSPGGQARSP--GGPSPGGPSPGG 97
Query: 197 GAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSPGYSPTSPSVGAR--GGPAAGYASPQ 370
A +P PA + G+G SP PA + G SPG SP R GGP+ G SP
Sbjct: 98 PARSPGGPA--RSPGGLGRSPGGPAQSPGGLGRSPGGPAQSPGGLGRSPGGPSPGGPSPG 155
Query: 371 SP--GYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSP 478
P G SP PG + SP PA SP P
Sbjct: 156 GPSSGGPARSPGGPSPGGPARSPGGPSPGGPARSPGGP 193
Score = 66.2 bits (160), Expect = 1e-09
Identities = 67/182 (36%), Positives = 78/182 (42%), Gaps = 23/182 (12%)
Frame = +2
Query: 41 ADAAGRATPGRMTPG---RSPAGRFTPRMSPA----SPGYAAMSPRFGGGLG---GGPA- 187
A + G +PG +PG RSP G P SP SPG A SP GGLG GGPA
Sbjct: 82 ARSPGGPSPGGPSPGGPARSPGG---PARSPGGLGRSPGGPAQSP---GGLGRSPGGPAQ 135
Query: 188 --GGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSPGYSPTSPSVGARGGPAAGYA 361
GG G +P P+ SPG PS+ A S G SPG SP + GGPA
Sbjct: 136 SPGGLGR-SPGGPSPGGPSPG---GPSSGGPARSPGGPSPGGPARSPGGPSPGGPARSPG 191
Query: 362 SP-QSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSP---------FSPNYAAASSPAYQ 511
P +SPG + PG SP PA SP SP ++ PA
Sbjct: 192 GPARSPGGPSSGGLGRSPGGPSPGGPARSPGGPARSPGGPSSGGPARSPGGPSSGGPARS 251
Query: 512 PP 517
PP
Sbjct: 252 PP 253
Score = 60.5 bits (145), Expect = 7e-08
Identities = 59/150 (39%), Positives = 67/150 (44%), Gaps = 10/150 (6%)
Frame = +2
Query: 62 TPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPA------SPA 223
+PG + GRSP G +P SPG P GG GGPA G A + SP
Sbjct: 65 SPGGL--GRSPGGP-SPGGQARSPG----GPSPGGPSPGGPARSPGGPARSPGGLGRSPG 117
Query: 224 YMATSP-GMGYSPSTPALAVSSPGYSP-GYSPTSPSVG--ARGGPAAGYASPQSPGYVPT 391
A SP G+G SP PA + G SP G SP PS G + GGPA P SPG
Sbjct: 118 GPAQSPGGLGRSPGGPAQSPGGLGRSPGGPSPGGPSPGGPSSGGPARSPGGP-SPGGPAR 176
Query: 392 SPAYARPGTVVAAANVYSPSSPAYSPFSPN 481
SP PG SP PA SP P+
Sbjct: 177 SPGGPSPG-----GPARSPGGPARSPGGPS 201
Score = 58.5 bits (140), Expect = 3e-07
Identities = 55/141 (39%), Positives = 65/141 (46%), Gaps = 6/141 (4%)
Frame = +2
Query: 65 PGRMTPG---RSPAGRFTPRMSPASPGYAAMS--PRFGGGLGGGPAGGA-GAYAPASPAY 226
PG +PG RSP G P SP SPG + R GGLG P G + G +P P++
Sbjct: 1 PGDPSPGGPARSPGG---PARSPGSPGGPSPGGQARSPGGLGRSPGGPSPGGPSPGGPSW 57
Query: 227 MATSPGMGYSPSTPALAVSSPGYSPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYA 406
SPG G + S L S G SPG SP GGP+ G SP P P PA +
Sbjct: 58 ---SPG-GPAQSPGGLGRSPGGPSPGGQARSP-----GGPSPGGPSPGGPARSPGGPARS 108
Query: 407 RPGTVVAAANVYSPSSPAYSP 469
PG + SP PA SP
Sbjct: 109 -PGGLGR-----SPGGPAQSP 123
Score = 55.5 bits (132), Expect = 2e-06
Identities = 46/126 (36%), Positives = 55/126 (43%), Gaps = 5/126 (3%)
Frame = +2
Query: 53 GRATPGRMTPGRSPAGRFTPRMSPA--SPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAY 226
G +PG +PG +G P SP SPG A SP GGP+ G A +P PA
Sbjct: 145 GGPSPGGPSPGGPSSGG--PARSPGGPSPGGPARSP-------GGPSPGGPARSPGGPAR 195
Query: 227 MATSP---GMGYSPSTPALAVSSPGYSPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSP 397
P G+G SP P+ P SPG SP + GGPA P S G P
Sbjct: 196 SPGGPSSGGLGRSPGGPS--PGGPARSPGGPARSPGGPSSGGPARSPGGPSSGG-----P 248
Query: 398 AYARPG 415
A + PG
Sbjct: 249 ARSPPG 254
[235][TOP]
>UniRef100_UPI00016DFC5B UPI00016DFC5B related cluster n=1 Tax=Takifugu rubripes
RepID=UPI00016DFC5B
Length = 609
Score = 66.6 bits (161), Expect = 1e-09
Identities = 59/158 (37%), Positives = 68/158 (43%), Gaps = 16/158 (10%)
Frame = +2
Query: 53 GRATPGRMTPGR---SPAGRFTPRMSPA---------SPGYAAMSPRFGGGLGGGPAGGA 196
G +PG +PG SP G P SP SPG A SP GG GGP+ G
Sbjct: 56 GGPSPGGPSPGGPSWSPGG---PAQSPGGLGRSPGGPSPGGQARSP--GGPSPGGPSPGG 110
Query: 197 GAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSPGYSPTSPSVGAR--GGPAAGYASPQ 370
A +P PA + G+G SP PA + G SPG SP R GGP+ G SP
Sbjct: 111 PARSPGGPA--RSPGGLGRSPGGPAQSPGGLGRSPGGPAQSPGGLGRSPGGPSPGGPSPG 168
Query: 371 SP--GYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSP 478
P G SP PG + SP PA SP P
Sbjct: 169 GPSSGGPARSPGGPSPGGPARSPGGPSPGGPARSPGGP 206
Score = 66.2 bits (160), Expect = 1e-09
Identities = 67/182 (36%), Positives = 78/182 (42%), Gaps = 23/182 (12%)
Frame = +2
Query: 41 ADAAGRATPGRMTPG---RSPAGRFTPRMSPA----SPGYAAMSPRFGGGLG---GGPA- 187
A + G +PG +PG RSP G P SP SPG A SP GGLG GGPA
Sbjct: 95 ARSPGGPSPGGPSPGGPARSPGG---PARSPGGLGRSPGGPAQSP---GGLGRSPGGPAQ 148
Query: 188 --GGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSPGYSPTSPSVGARGGPAAGYA 361
GG G +P P+ SPG PS+ A S G SPG SP + GGPA
Sbjct: 149 SPGGLGR-SPGGPSPGGPSPG---GPSSGGPARSPGGPSPGGPARSPGGPSPGGPARSPG 204
Query: 362 SP-QSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSP---------FSPNYAAASSPAYQ 511
P +SPG + PG SP PA SP SP ++ PA
Sbjct: 205 GPARSPGGPSSGGLGRSPGGPSPGGPARSPGGPARSPGGPSSGGPARSPGGPSSGGPARS 264
Query: 512 PP 517
PP
Sbjct: 265 PP 266
Score = 60.5 bits (145), Expect = 7e-08
Identities = 56/149 (37%), Positives = 65/149 (43%), Gaps = 14/149 (9%)
Frame = +2
Query: 65 PGRMTPG---RSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMAT 235
PG +PG RSP G P SP P A SP GGL P G + SP +
Sbjct: 1 PGDPSPGGPARSPGG---PARSPGGP---ARSPS-PGGLAQSPGGPSPGGQARSPGGLGR 53
Query: 236 SPGM----GYSPSTPALAVSSPGYSPG---YSPTSPSVGAR----GGPAAGYASPQSPGY 382
SPG G SP P+ + P SPG SP PS G + GGP+ G SP P
Sbjct: 54 SPGGPSPGGPSPGGPSWSPGGPAQSPGGLGRSPGGPSPGGQARSPGGPSPGGPSPGGPAR 113
Query: 383 VPTSPAYARPGTVVAAANVYSPSSPAYSP 469
P PA + PG + SP PA SP
Sbjct: 114 SPGGPARS-PGGLGR-----SPGGPAQSP 136
Score = 60.5 bits (145), Expect = 7e-08
Identities = 59/150 (39%), Positives = 67/150 (44%), Gaps = 10/150 (6%)
Frame = +2
Query: 62 TPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPA------SPA 223
+PG + GRSP G +P SPG P GG GGPA G A + SP
Sbjct: 78 SPGGL--GRSPGGP-SPGGQARSPG----GPSPGGPSPGGPARSPGGPARSPGGLGRSPG 130
Query: 224 YMATSP-GMGYSPSTPALAVSSPGYSP-GYSPTSPSVG--ARGGPAAGYASPQSPGYVPT 391
A SP G+G SP PA + G SP G SP PS G + GGPA P SPG
Sbjct: 131 GPAQSPGGLGRSPGGPAQSPGGLGRSPGGPSPGGPSPGGPSSGGPARSPGGP-SPGGPAR 189
Query: 392 SPAYARPGTVVAAANVYSPSSPAYSPFSPN 481
SP PG SP PA SP P+
Sbjct: 190 SPGGPSPG-----GPARSPGGPARSPGGPS 214
Score = 55.5 bits (132), Expect = 2e-06
Identities = 46/126 (36%), Positives = 55/126 (43%), Gaps = 5/126 (3%)
Frame = +2
Query: 53 GRATPGRMTPGRSPAGRFTPRMSPA--SPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAY 226
G +PG +PG +G P SP SPG A SP GGP+ G A +P PA
Sbjct: 158 GGPSPGGPSPGGPSSGG--PARSPGGPSPGGPARSP-------GGPSPGGPARSPGGPAR 208
Query: 227 MATSP---GMGYSPSTPALAVSSPGYSPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSP 397
P G+G SP P+ P SPG SP + GGPA P S G P
Sbjct: 209 SPGGPSSGGLGRSPGGPS--PGGPARSPGGPARSPGGPSSGGPARSPGGPSSGG-----P 261
Query: 398 AYARPG 415
A + PG
Sbjct: 262 ARSPPG 267
[236][TOP]
>UniRef100_A5E8N9 Putative uncharacterized protein n=1 Tax=Bradyrhizobium sp. BTAi1
RepID=A5E8N9_BRASB
Length = 727
Score = 66.6 bits (161), Expect = 1e-09
Identities = 65/189 (34%), Positives = 71/189 (37%), Gaps = 28/189 (14%)
Frame = +2
Query: 38 SADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGG-AGA---- 202
S AAG A P TP RS A P +P PG P G G P G GA
Sbjct: 217 SPPAAGNAPPPAHTPPRSAAPSPQPTPAPTPPGGPGQRPPIQPGAGAPPPGAPQGAPPPR 276
Query: 203 YAPASPA-YMATSPGMGYSPSTPALAVSSPGYSPGYSPTSPSVGARGG------PAAGYA 361
AP PA +A PG SP+TP A + P P P +PS G R G PAAG
Sbjct: 277 GAPTPPAGTVAPGPGTPPSPATPPAAQTPP---PNAQPGTPSPGPRPGTPPTPPPAAGPG 333
Query: 362 SPQSPGYVPTSPAYARPGTVVAAAN----------------VYSPSSPAYSPFSPNYAAA 493
PG P A PG AA V PA + P AA
Sbjct: 334 PAAGPGAAGPGPGTAAPGPGGPAATPAPGPGSGPGAGAQGAVPPAGPPAMTNRPPPQVAA 393
Query: 494 SSPAYQPPS 520
PA PPS
Sbjct: 394 PIPAPPPPS 402
[237][TOP]
>UniRef100_C6F0B0 RNA polymerase II (Fragment) n=1 Tax=Plasmodium falciparum
RepID=C6F0B0_PLAFA
Length = 188
Score = 66.2 bits (160), Expect = 1e-09
Identities = 47/123 (38%), Positives = 57/123 (46%), Gaps = 6/123 (4%)
Frame = +2
Query: 128 SPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSPG- 304
SP Y+ SP+ Y+P SP Y TSP YSP++P + +SP YSP
Sbjct: 37 SPVYSVTSPK---------------YSPTSPKYSPTSPK--YSPTSPKYSPTSPKYSPTS 79
Query: 305 --YSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVV---AAANVYSPSSPAYSP 469
YSPTSP P S SP + PTSPAY+ V N + P SPAY
Sbjct: 80 PKYSPTSPVAQNIASPNYSPYSITSPKFSPTSPAYSISSPVYDKSGVVNAHQPMSPAYIL 139
Query: 470 FSP 478
SP
Sbjct: 140 QSP 142
Score = 64.3 bits (155), Expect = 5e-09
Identities = 50/126 (39%), Positives = 62/126 (49%), Gaps = 24/126 (19%)
Frame = +2
Query: 203 YAPASPAYMA-------TSP---------GMGYSPSTPALAVSSPGYSPG---YSPTSPS 325
Y+P SP Y A TSP Y+ +P +V+SP YSP YSPTSP
Sbjct: 1 YSPTSPTYNANNAYYSPTSPKNQNDQMNVNSQYNVMSPVYSVTSPKYSPTSPKYSPTSPK 60
Query: 326 VGARGGPAAGYASPQSPGYVPTSPAYARPGTV---VAAANV--YSPSSPAYSPFSPNYAA 490
P + SP SP Y PTSP Y+ V +A+ N YS +SP +SP SP Y +
Sbjct: 61 YS----PTSPKYSPTSPKYSPTSPKYSPTSPVAQNIASPNYSPYSITSPKFSPTSPAY-S 115
Query: 491 ASSPAY 508
SSP Y
Sbjct: 116 ISSPVY 121
[238][TOP]
>UniRef100_UPI00017E10CB cuticular protein n=1 Tax=Acyrthosiphon pisum RepID=UPI00017E10CB
Length = 310
Score = 65.5 bits (158), Expect = 2e-09
Identities = 53/153 (34%), Positives = 69/153 (45%), Gaps = 7/153 (4%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMS----PASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPG 244
TP S A + P PA+P Y + +P + PA A + APA PA A
Sbjct: 150 TPSYSSAPAYKPAYKAPAYPAAPAYPS-APAYPAA-PAYPAAPAYSAAPAYPAAPAYPAA 207
Query: 245 MGYSPSTPALAVSSPGYSPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVV 424
Y P+ A A S+P Y P YS + S A P A P +P Y P +PAY
Sbjct: 208 PAYKPAYSAPAYSAPAYKPAYSAPAYSAPAYSAP----AYPAAPAY-PAAPAYPTESYPA 262
Query: 425 AAANVYSPSSPAYSPFSPNYA---AASSPAYQP 514
A A YS +PAY +P A + +PAY+P
Sbjct: 263 APAYGYSTPAPAYGYSTPAPAYGYSTPAPAYKP 295
[239][TOP]
>UniRef100_C5Y8R4 Putative uncharacterized protein Sb06g017200 n=1 Tax=Sorghum
bicolor RepID=C5Y8R4_SORBI
Length = 367
Score = 65.5 bits (158), Expect = 2e-09
Identities = 53/162 (32%), Positives = 71/162 (43%), Gaps = 9/162 (5%)
Frame = +2
Query: 62 TPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSP 241
TPG + +G +P SPA+P A S + G+ Y+PASP Y
Sbjct: 74 TPGSLDCSSQRSG--SPDYSPATPDPATPSSQ---------RSGSPVYSPASPEY----- 117
Query: 242 GMGYSPSTPALAVSS-----PGYSPG---YSPTSPSVGARGGPAAGYASPQ-SPGYVPTS 394
TP L SS P YSP Y+P +PS G P ASP+ +P P+S
Sbjct: 118 -------TPLLKPSSRRFGSPDYSPATPEYTPLTPSSQRSGSPVYSPASPEYTPLLTPSS 170
Query: 395 PAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
+ P YSP+SP Y+P +P+ + SP Y P S
Sbjct: 171 RRFGSPD--------YSPASPEYTPLTPSSQRSGSPVYSPGS 204
Score = 58.2 bits (139), Expect = 4e-07
Identities = 61/204 (29%), Positives = 86/204 (42%), Gaps = 33/204 (16%)
Frame = +2
Query: 8 ATASFSPIMSSADAAGRATPGRMTPGRSPAG-RFTPRMSPAS-----PGYAAMSPRFGGG 169
AT ++P+ S+ +G +P SPA +TP ++P+S P Y+ SP +
Sbjct: 136 ATPEYTPLTPSSQRSG-------SPVYSPASPEYTPLLTPSSRRFGSPDYSPASPEYTPL 188
Query: 170 LGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARG 340
G+ Y+P SP Y+P TP SP Y+P Y+P SPS +
Sbjct: 189 TPSSQRSGSPVYSPGSPE---------YTPLTPPKRSGSPAYTPAAANYTPRSPSSSSLS 239
Query: 341 -----------GPAAGYAS-PQSPGYVPTS-------PAYARPGTVVAAANVYSP--SSP 457
P+ G +S SP Y P S P Y T +A YSP +SP
Sbjct: 240 DFFHDFDRHCTSPSTGCSSRAVSPEYTPASASGCCSPPDYFFCYTSPPSAG-YSPRDASP 298
Query: 458 AYSPFSPNYA---AASSPAYQPPS 520
Y+P P + A+SP Y P S
Sbjct: 299 EYTPSIPLISLPRRAASPDYTPSS 322
[240][TOP]
>UniRef100_Q7XRB2 OSJNBa0006B20.10 protein n=3 Tax=Oryza sativa RepID=Q7XRB2_ORYSJ
Length = 335
Score = 65.5 bits (158), Expect = 2e-09
Identities = 54/164 (32%), Positives = 70/164 (42%), Gaps = 4/164 (2%)
Frame = +2
Query: 23 SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
SP S A RA TP P +P SP SP A SP + P+ A +
Sbjct: 89 SPDYSPASPPRRAASPDYTPESPPRRAASPDYSPESPPRRAASPDY---TPASPSRRAAS 145
Query: 203 --YAPASPAYMATSPGMGYSPSTPA--LAVSSPGYSPGYSPTSPSVGARGGPAAGYASPQ 370
Y P SP A SP Y+P++P+ A SSP Y+P P + P+
Sbjct: 146 PDYTPESPPRRAASPD--YTPASPSRRAAASSPDYTPESPPRRRAASPDYSPSTPPRRAA 203
Query: 371 SPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSP 502
SP Y P++P AA+ YSPS+P SP+Y S P
Sbjct: 204 SPDYSPSTPPRR------AASPDYSPSTPPRRAASPDYTPMSPP 241
Score = 63.9 bits (154), Expect = 6e-09
Identities = 55/155 (35%), Positives = 69/155 (44%), Gaps = 10/155 (6%)
Frame = +2
Query: 92 PAGRFTPRMSP----ASPGYAAMSPRFGGGLGGGPAGGAGA-YAPASPAYMATSPGMGYS 256
P+ +TP P ASP Y SP P A Y+PASP A SP Y+
Sbjct: 59 PSPDYTPASPPHRRAASPDYTPESP---------PRRAASPDYSPASPPRRAASPD--YT 107
Query: 257 PSTPALAVSSPGYSPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSP---AYARPGTVVA 427
P +P +SP YSP SP + PA+ SP Y P SP A + T +
Sbjct: 108 PESPPRRAASPDYSPE-SPPRRAASPDYTPASPSRRAASPDYTPESPPRRAASPDYTPAS 166
Query: 428 AANVYSPSSPAYSPFSPNYAAASSPAYQP--PSRR 526
+ + SSP Y+P SP A+SP Y P P RR
Sbjct: 167 PSRRAAASSPDYTPESPPRRRAASPDYSPSTPPRR 201
Score = 63.5 bits (153), Expect = 8e-09
Identities = 55/166 (33%), Positives = 71/166 (42%), Gaps = 2/166 (1%)
Frame = +2
Query: 23 SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGY--AAMSPRFGGGLGGGPAGGA 196
SP + A + RA TP P +P +PASP AA SP + +
Sbjct: 131 SPDYTPASPSRRAASPDYTPESPPRRAASPDYTPASPSRRAAASSPDYTPESPPRRRAAS 190
Query: 197 GAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSPGYSPTSPSVGARGGPAAGYASPQSP 376
Y+P++P A SP YSPSTP +SP YSP P R + Y +P SP
Sbjct: 191 PDYSPSTPPRRAASPD--YSPSTPPRRAASPDYSPSTPP-------RRAASPDY-TPMSP 240
Query: 377 GYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQP 514
SP Y + AA SP Y+P +P A+SP Y P
Sbjct: 241 PRRAASPDYTQMTPPRRAA------SPDYTPSTPPPPRAASPDYTP 280
[241][TOP]
>UniRef100_Q6DCF9 Anxa7 protein n=1 Tax=Xenopus laevis RepID=Q6DCF9_XENLA
Length = 520
Score = 65.1 bits (157), Expect = 3e-09
Identities = 48/154 (31%), Positives = 58/154 (37%), Gaps = 13/154 (8%)
Frame = +2
Query: 92 PAGRFTPR--MSPASPGYAAMSPRFGGGLGGGPAGG---AGAYAPASPAYMATSPGMGYS 256
P G+F P P + G A P GGG P GG AG Y PA Y GM
Sbjct: 32 PGGQFPPAGGQFPPAAGGGAFPPASGGGFPPAPGGGYPQAGGY-PAPGGYPG---GMPSY 87
Query: 257 PSTPALAVSSPGYSPGYSPTSPSVGARG-------GPAAGYASPQSPGY-VPTSPAYARP 412
P P + G G P +P+ G G PA GY +P + G+ VP + Y P
Sbjct: 88 PGAPGFGAPAGGQGYGAPPGAPAYGVPGYGGPGFNAPAGGYGAPNAGGFGVPPAGGYGAP 147
Query: 413 GTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQP 514
G PSS +Y P P P
Sbjct: 148 GGAPGYGGFSQPSSQSYGAGGPGQMPGQMPGQMP 181
[242][TOP]
>UniRef100_C8XIP8 Membrane-flanked domain protein n=1 Tax=Nakamurella multipartita
DSM 44233 RepID=C8XIP8_9ACTO
Length = 479
Score = 65.1 bits (157), Expect = 3e-09
Identities = 55/186 (29%), Positives = 71/186 (38%), Gaps = 14/186 (7%)
Frame = +2
Query: 5 NATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGP 184
N T + P + A G+ P PA + P A PGY P+ G G P
Sbjct: 205 NQTGGYGPATGAQPAYGQGYP--------PAQGYPPAAGYAQPGYGPAHPQTGPTQGYPP 256
Query: 185 AGGAGAYAPASP--AYMA---TSPGMGYSPSTPALAVSSP-GY-SPGYSPT---SPSVGA 334
G Y P P +Y A + GY PS A P GY PGY+P P
Sbjct: 257 PGQPQGYPPPGPTQSYPAGHQPTQSPGYPPSGYATGGYPPNGYQQPGYAPNGYQQPGYQQ 316
Query: 335 RGGPAAGYASPQSPGYV----PTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSP 502
G + GY P +P P P Y++ G A S PA +P + A+ P
Sbjct: 317 PGHASGGYPPPAAPANYSQPGPPQPGYSQSGYSQAGYAQPGSSQPAEGQAAPPFTPAAGP 376
Query: 503 AYQPPS 520
QPP+
Sbjct: 377 GEQPPA 382
[243][TOP]
>UniRef100_UPI0001761210 PREDICTED: similar to C25F9.2 n=1 Tax=Danio rerio
RepID=UPI0001761210
Length = 1744
Score = 64.7 bits (156), Expect = 4e-09
Identities = 53/169 (31%), Positives = 77/169 (45%), Gaps = 3/169 (1%)
Frame = +2
Query: 8 ATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPA 187
++A P+ + A RA + TP P P ++PA+P A +P
Sbjct: 9 SSAVLYPVTAPPIAPARAAAPKTTPTAMPEPAAAPMLAPATPASTATAPPAAAVAPAAAP 68
Query: 188 GGAGAYAPASPAYMA-TSPGMGYSPSTPALAVSSPGYSPGYSPTSPSVGARGGPAAGYAS 364
A A PAS A A T+P +TPA ++ +P +P S + A P A A+
Sbjct: 69 AVAPAATPASTAAAAPTAPA-----ATPASTAAAAPTAPAATPASTAAAA---PTAPAAT 120
Query: 365 PQSPGYVPTSPAYARPGTVVAA--ANVYSPSSPAYSPFSPNYAAASSPA 505
P S PT+PA A P + AA A +P+S A +P +P A A+ PA
Sbjct: 121 PASTAAAPTAPA-ATPASTAAAPTAPAATPASTAAAPTAPAVAPAAMPA 168
Score = 55.1 bits (131), Expect = 3e-06
Identities = 50/170 (29%), Positives = 75/170 (44%), Gaps = 8/170 (4%)
Frame = +2
Query: 35 SSADAAGRATPGRMT-PGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAP 211
SS ++A A +T P +PA P+ +P + A +P AP
Sbjct: 3 SSTESASSAVLYPVTAPPIAPARAAAPKTTPTAMPEPAAAPML---------------AP 47
Query: 212 ASPAYMATSPGMGYSPSTPALAVSSPGYSPGYSPTSPSVGARGGPAA-----GYASPQSP 376
A+PA AT+P P+ ++P +P +P S + A PAA A+P +P
Sbjct: 48 ATPASTATAP-----PAAAVAPAAAPAVAPAATPASTAAAAPTAPAATPASTAAAAPTAP 102
Query: 377 GYVPTSPAYARPGTVVA--AANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
P S A A P A A+ +P++PA +P S AA ++PA P S
Sbjct: 103 AATPASTAAAAPTAPAATPASTAAAPTAPAATPAS-TAAAPTAPAATPAS 151
[244][TOP]
>UniRef100_Q01K81 H0525C06.3 protein n=2 Tax=Oryza sativa RepID=Q01K81_ORYSA
Length = 350
Score = 64.7 bits (156), Expect = 4e-09
Identities = 60/188 (31%), Positives = 89/188 (47%), Gaps = 15/188 (7%)
Frame = +2
Query: 2 INATASFSPIMSSADAAGRAT----PGRMTPGRSPAGRF--TPRMSPASPGYAAMSPRFG 163
+++++S++ +SAD A T P M P P R +P +P++P A SP +
Sbjct: 89 VSSSSSYASCSASADDAFYWTCFCGPMVMAPPPPPPPRTAASPEYTPSTPWRRAASPDYT 148
Query: 164 GGLGGGPAGGAGAYAPA---SPAYMATSPGMGYSPSTPALAVSSPGYSPGYSPTSPSVGA 334
A +AP+ SP+ A SP YSPSTP +SP YSP +P +
Sbjct: 149 PSTPWRRAASPD-HAPSPPWSPSRRAASPD--YSPSTPPRRAASPDYSPS-TPPRRAASP 204
Query: 335 RGGPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYA------AAS 496
P+ + SP Y P++P ++ P A++ YSPS+P SPNY A+
Sbjct: 205 DYTPSTPWRRAASPDYAPSTP-WSPPRR--ASSPDYSPSTPPRRAASPNYTPSTPPRRAA 261
Query: 497 SPAYQPPS 520
SP Y P S
Sbjct: 262 SPDYSPSS 269
Score = 64.7 bits (156), Expect = 4e-09
Identities = 58/166 (34%), Positives = 75/166 (45%), Gaps = 20/166 (12%)
Frame = +2
Query: 77 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA--YAPASPAYMATSPGMG 250
TP R A +P +P++P A SP P+ A + Y+P++P A SP
Sbjct: 137 TPWRRAA---SPDYTPSTPWRRAASPDHAPSPPWSPSRRAASPDYSPSTPPRRAASPD-- 191
Query: 251 YSPSTPALAVSSPGY----------SPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPA 400
YSPSTP +SP Y SP Y+P++P R + Y SP +P SP
Sbjct: 192 YSPSTPPRRAASPDYTPSTPWRRAASPDYAPSTPWSPPRRASSPDY-SPSTPPRRAASPN 250
Query: 401 YARPGTVV--AAANVYSPSSPAYSPFSPNYA------AASSPAYQP 514
Y P T AA+ YSPSSP SP Y A+SP Y P
Sbjct: 251 YT-PSTPPRRAASPDYSPSSPPRRAASPEYTQLSPPRRAASPDYNP 295
Score = 57.4 bits (137), Expect = 6e-07
Identities = 49/165 (29%), Positives = 71/165 (43%), Gaps = 2/165 (1%)
Frame = +2
Query: 23 SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
SP S + RA +P P +P +P++P A SP + P A +
Sbjct: 175 SPDYSPSTPPRRAASPDYSPSTPPRRAASPDYTPSTPWRRAASPDYAPSTPWSPPRRASS 234
Query: 203 --YAPASPAYMATSPGMGYSPSTPALAVSSPGYSPGYSPTSPSVGARGGPAAGYASPQSP 376
Y+P++P A SP Y+PSTP +SP Y SP+SP A SP
Sbjct: 235 PDYSPSTPPRRAASPN--YTPSTPPRRAASPDY----SPSSPPRRA-----------ASP 277
Query: 377 GYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQ 511
Y SP AA+ Y+PS+P SP + + +SP ++
Sbjct: 278 EYTQLSPPRR------AASPDYNPSTPPPSPVPSDAGSRTSPPWR 316
[245][TOP]
>UniRef100_Q9BMP2 DNA-directed RNA polymerase (Fragment) n=1 Tax=Stylonychia mytilus
RepID=Q9BMP2_STYMT
Length = 1678
Score = 64.7 bits (156), Expect = 4e-09
Identities = 65/200 (32%), Positives = 90/200 (45%), Gaps = 35/200 (17%)
Frame = +2
Query: 20 FSPIMSSADAAGRATPGRMTPGRSPAGRFTP-----RMSPA-----SPGY-----AAMSP 154
++ I S A PGR G + ++P RMSP+ SPGY A+ SP
Sbjct: 1467 YNAIQSPIYHATEGGPGRSPTGNQASPIYSPTTQNNRMSPSYYNSVSPGYYRTPGASSSP 1526
Query: 155 RFGGGLGGGPAG--------GAGAYAPAS----------PAYMATSPGMGYSPSTPALAV 280
+ LG + G+G+Y+P + P ++SP YSP+TPA
Sbjct: 1527 VYSQTLGSHQSPSYSPTQNQGSGSYSPTNQSKIHIYQHQPLDYSSSPH--YSPTTPAY-- 1582
Query: 281 SSPGYSPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYA-RPGTVVAAANVYSPSSP 457
+ YSP YSPTS VG+ Y QS Y S + PG A++ +Y P+SP
Sbjct: 1583 -NQHYSPSYSPTSNVVGSGLNQTPRYQVNQSSRYAMDSAHQSGSPGN--ASSGLYVPTSP 1639
Query: 458 AYSP-FSPNYAAASSPAYQP 514
AY+P SP+Y SS P
Sbjct: 1640 AYNPTTSPSYNNMSSRQNNP 1659
Score = 57.0 bits (136), Expect = 8e-07
Identities = 67/191 (35%), Positives = 77/191 (40%), Gaps = 32/191 (16%)
Frame = +2
Query: 44 DAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAA----MSPRFGGGLGGGP---AGGAGA 202
D G +T TPG G F+P SPGYA MSP G G P A +
Sbjct: 1411 DYGGASTHSMWTPGNQ--GSFSPSPGVYSPGYAQSPGYMSP--GQQFMGSPNYRAVQSPI 1466
Query: 203 Y-APASPAYMATSPGMG-----------YSPSTPALAVSSPGY---SPGYSPTSPSVGAR 337
Y A SP Y AT G G YSP+T +S Y SPGY T GA
Sbjct: 1467 YNAIQSPIYHATEGGPGRSPTGNQASPIYSPTTQNNRMSPSYYNSVSPGYYRTP---GAS 1523
Query: 338 GGPAAGYA--SPQSPGYVPT----SPAYARPGTVVAAANVYSP----SSPAYSPFSPNYA 487
P S QSP Y PT S +Y+ + P SSP YSP +P Y
Sbjct: 1524 SSPVYSQTLGSHQSPSYSPTQNQGSGSYSPTNQSKIHIYQHQPLDYSSSPHYSPTTPAYN 1583
Query: 488 AASSPAYQPPS 520
SP+Y P S
Sbjct: 1584 QHYSPSYSPTS 1594
[246][TOP]
>UniRef100_UPI0000222BCC Hypothetical protein CBG04553 n=1 Tax=Caenorhabditis briggsae AF16
RepID=UPI0000222BCC
Length = 723
Score = 64.3 bits (155), Expect = 5e-09
Identities = 57/170 (33%), Positives = 73/170 (42%), Gaps = 13/170 (7%)
Frame = +2
Query: 35 SSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPR--------FGGGLGGGPAG 190
SS G + G + G +PA P +PA A +P GGG GGG +G
Sbjct: 444 SSGGGGGGGSSGGYSGGSAPAPASEPAPAPAPEQAPAPAPAPAPSGGYSSGGGGGGGSSG 503
Query: 191 G-AGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSPGYSPTSPSVGARGGPAAGY--- 358
G +G APA + A +P P+ PA A SS GYS G S G+ GG + GY
Sbjct: 504 GYSGGSAPAPASEPAPAPAPEPEPA-PAPAPSSGGYSGGSSSGGGGGGSSGGSSGGYSGG 562
Query: 359 -ASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPA 505
A+P P PA A P A + YS S Y+ S+PA
Sbjct: 563 SAAPPPPPPPAPEPAPA-PAPAPAPSGGYSSEGGGGGGSSGGYSGGSAPA 611
Score = 58.9 bits (141), Expect = 2e-07
Identities = 48/153 (31%), Positives = 67/153 (43%), Gaps = 6/153 (3%)
Frame = +2
Query: 35 SSADAAGRATPGRMTPGRSPAGRFTPRMSPA-----SPGYAAMSPRFGGGLGGGPAGGAG 199
SS ++G + G P P P +PA S GY++ GGG GG G +G
Sbjct: 551 SSGGSSGGYSGGSAAPPPPPPPAPEPAPAPAPAPAPSGGYSSE----GGGGGGSSGGYSG 606
Query: 200 AYAPASPAYMATSPGMGYSPS-TPALAVSSPGYSPGYSPTSPSVGARGGPAAGYASPQSP 376
APA + A +P P+ PA A SS GYS G S G+ GG + GY+ +
Sbjct: 607 GSAPAPASEPAPAPAPEPEPAPAPASAPSSGGYSGGSSSGGGGGGSSGGSSGGYSGGSAA 666
Query: 377 GYVPTSPAYARPGTVVAAANVYSPSSPAYSPFS 475
P P P A A +P++P+ +S
Sbjct: 667 PPPPPPPPPPSPAPEPALAPEAAPAAPSGGGYS 699
[247][TOP]
>UniRef100_O62010 S19 chorion protein n=1 Tax=Ceratitis capitata RepID=O62010_CERCA
Length = 326
Score = 64.3 bits (155), Expect = 5e-09
Identities = 55/161 (34%), Positives = 79/161 (49%), Gaps = 12/161 (7%)
Frame = +2
Query: 74 MTPGRSP-AGRFTPRMSPASPGYAAMSPRFGGGLGGG----------PAGGAGAYAPASP 220
++ G SP AG T A+P +A S GG GG PA G + S
Sbjct: 80 VSAGGSPSAGPVTSTSYSAAPASSAGSSAPSGGYGGSDEPILFVNEIPAAGYSS----SG 135
Query: 221 AYMATSPGMGYSPSTPALAVSSPGYSPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPA 400
Y A +P S S PA + ++P +P YS +PS A PAA Y++P + VP +P+
Sbjct: 136 GYSAPAPAPAASYSAPAPSYTAP--APSYSAPAPSYSA---PAATYSAPTATYSVP-APS 189
Query: 401 YARPG-TVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
Y+ P + A A YS +P+YS S +YAA + +Y P+
Sbjct: 190 YSAPAPSYSAPAPSYSAPAPSYSAPSSSYAAPAPASYSAPA 230
[248][TOP]
>UniRef100_A8WXW9 Putative uncharacterized protein n=1 Tax=Caenorhabditis briggsae
RepID=A8WXW9_CAEBR
Length = 1075
Score = 64.3 bits (155), Expect = 5e-09
Identities = 57/170 (33%), Positives = 73/170 (42%), Gaps = 13/170 (7%)
Frame = +2
Query: 35 SSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPR--------FGGGLGGGPAG 190
SS G + G + G +PA P +PA A +P GGG GGG +G
Sbjct: 796 SSGGGGGGGSSGGYSGGSAPAPASEPAPAPAPEQAPAPAPAPAPSGGYSSGGGGGGGSSG 855
Query: 191 G-AGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSPGYSPTSPSVGARGGPAAGY--- 358
G +G APA + A +P P+ PA A SS GYS G S G+ GG + GY
Sbjct: 856 GYSGGSAPAPASEPAPAPAPEPEPA-PAPAPSSGGYSGGSSSGGGGGGSSGGSSGGYSGG 914
Query: 359 -ASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPA 505
A+P P PA A P A + YS S Y+ S+PA
Sbjct: 915 SAAPPPPPPPAPEPAPA-PAPAPAPSGGYSSEGGGGGGSSGGYSGGSAPA 963
Score = 58.9 bits (141), Expect = 2e-07
Identities = 48/153 (31%), Positives = 67/153 (43%), Gaps = 6/153 (3%)
Frame = +2
Query: 35 SSADAAGRATPGRMTPGRSPAGRFTPRMSPA-----SPGYAAMSPRFGGGLGGGPAGGAG 199
SS ++G + G P P P +PA S GY++ GGG GG G +G
Sbjct: 903 SSGGSSGGYSGGSAAPPPPPPPAPEPAPAPAPAPAPSGGYSSE----GGGGGGSSGGYSG 958
Query: 200 AYAPASPAYMATSPGMGYSPS-TPALAVSSPGYSPGYSPTSPSVGARGGPAAGYASPQSP 376
APA + A +P P+ PA A SS GYS G S G+ GG + GY+ +
Sbjct: 959 GSAPAPASEPAPAPAPEPEPAPAPASAPSSGGYSGGSSSGGGGGGSSGGSSGGYSGGSAA 1018
Query: 377 GYVPTSPAYARPGTVVAAANVYSPSSPAYSPFS 475
P P P A A +P++P+ +S
Sbjct: 1019 PPPPPPPPPPSPAPEPALAPEAAPAAPSGGGYS 1051
[249][TOP]
>UniRef100_A6YIY0 Major ampullate spidroin 2 n=1 Tax=Latrodectus hesperus
RepID=A6YIY0_9ARAC
Length = 3779
Score = 63.9 bits (154), Expect = 6e-09
Identities = 55/156 (35%), Positives = 62/156 (39%), Gaps = 1/156 (0%)
Frame = +2
Query: 41 ADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASP 220
A AA G PGR A + P S A+ AA S R G G G GGAGA A A+
Sbjct: 3150 AGAAAAVAAGGAGPGRQQA--YGPGGSGAAAAAAAGSGRSGYGPGAAGTGGAGAAAAAAA 3207
Query: 221 AYMATSPGMGYSPSTPALAVSSPGYSPGY-SPTSPSVGARGGPAAGYASPQSPGYVPTSP 397
+ Y P A +S PGY G G AA A PG T
Sbjct: 3208 GGAGSGRQQAYGPGGSGAAAASAAGGPGYGGQQGYGPGGAGAAAAAAAGGAGPG---TQQ 3264
Query: 398 AYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPA 505
AY PG AAA + S P S + P A S PA
Sbjct: 3265 AYG-PGGSGAAAAAAAASGPGPSGYEPGAAGPSGPA 3299
Score = 60.8 bits (146), Expect = 5e-08
Identities = 54/166 (32%), Positives = 63/166 (37%), Gaps = 2/166 (1%)
Frame = +2
Query: 35 SSADAAGRATPGRMTP-GRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAP 211
++A AAG A PGR G AG + A PG + P G G G AG A A A
Sbjct: 2673 AAAAAAGGAGPGRQQAYGPGGAGAAAAAAAAAGPGPSGYGPGASGPSGTGGAGAAAAAAA 2732
Query: 212 ASPAYMATSPGMGYSPSTPALAVSSPGYSPGYSPTSPSVGARGGPAAGYASP-QSPGYVP 388
A + PG GY S PG GY P A AAG A P + GY P
Sbjct: 2733 AG----GSGPG-GYGQGASGYGPSGPGGQQGYGPGGSGAAAAAAAAAGGAGPGRQQGYGP 2787
Query: 389 TSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPSRR 526
S A AA Y P AAA++ P R+
Sbjct: 2788 GSSGAA---AAAAAGGPGYGGPQGYGPGGAGAAAAAAAGGAGPGRQ 2830
Score = 58.2 bits (139), Expect = 4e-07
Identities = 53/160 (33%), Positives = 67/160 (41%), Gaps = 3/160 (1%)
Frame = +2
Query: 35 SSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPA 214
++A AAG A PGR + P S A+ AA P +GG G GP GGAGA A A
Sbjct: 1566 AAAAAAGGAGPGRQQG-------YGPGSSGAAAAAAAGGPGYGGQQGYGP-GGAGAAAAA 1617
Query: 215 SPAYMATSPGMGYSPS-TPALAVSSPGYSP-GYSPTSPSVGARGGPAAGYASPQSPGYVP 388
+ Y P + A A ++ G P GY P + G G AA A PG
Sbjct: 1618 AAGGAGPGRQQAYGPGGSGAAAAAAAGTGPSGYGPGAAGPGGAGAAAAAAAGSAGPG--- 1674
Query: 389 TSPAYARPGT-VVAAANVYSPSSPAYSPFSPNYAAASSPA 505
AY G+ AAA P + P A A++ A
Sbjct: 1675 RQQAYGPGGSGAAAAAAAGGPGYGGQQGYGPGGAGAAAAA 1714
Score = 57.8 bits (138), Expect = 5e-07
Identities = 53/160 (33%), Positives = 67/160 (41%), Gaps = 3/160 (1%)
Frame = +2
Query: 35 SSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPA 214
++A AAG A PGR + P S A+ AA P +GG G GP GGAGA A A
Sbjct: 2344 AAAAAAGGAGPGRQQG-------YGPGSSGAAAAAAAGGPGYGGQQGYGP-GGAGAAAAA 2395
Query: 215 SPAYMATSPGMGYSPS-TPALAVSSPGYSP-GYSPTSPSVGARGGPAAGYASPQSPGYVP 388
+ Y P + A A ++ G P GY P + G G AA A PG
Sbjct: 2396 AAGGAGPGRQQAYGPGGSGAAAAAAAGTGPSGYGPGAAGPGGAGAAAAAAAGGAGPG--- 2452
Query: 389 TSPAYARPGT-VVAAANVYSPSSPAYSPFSPNYAAASSPA 505
AY G+ AAA P + P A A++ A
Sbjct: 2453 RQQAYGPGGSGAAAAAAAGGPGYGGQQGYGPGGAGAAAAA 2492
Score = 56.6 bits (135), Expect = 1e-06
Identities = 62/190 (32%), Positives = 75/190 (39%), Gaps = 29/190 (15%)
Frame = +2
Query: 35 SSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPA 214
++A AAG A PGR G P G A+ AA P +GG G GP GGAGA A A
Sbjct: 2627 AAAAAAGGAGPGRQQ-GYGPGG--------AAAAAAAGGPGYGGQQGYGP-GGAGAAAAA 2676
Query: 215 SPAYMATSPGMGYSP-----STPALAVSSPG---YSPGYSPTSPSVGARGGPAAGYASPQ 370
+ Y P + A A + PG Y PG S S + GA AA A
Sbjct: 2677 AAGGAGPGRQQAYGPGGAGAAAAAAAAAGPGPSGYGPGASGPSGTGGAGAAAAAAAAGGS 2736
Query: 371 SP--------GYVPTSPAYAR------PGTVVAAANVYSPSSP----AYSPFSPNYAAAS 496
P GY P+ P + G AAA + P Y P S AAA+
Sbjct: 2737 GPGGYGQGASGYGPSGPGGQQGYGPGGSGAAAAAAAAAGGAGPGRQQGYGPGSSGAAAAA 2796
Query: 497 S---PAYQPP 517
+ P Y P
Sbjct: 2797 AAGGPGYGGP 2806
Score = 55.8 bits (133), Expect = 2e-06
Identities = 60/181 (33%), Positives = 75/181 (41%), Gaps = 22/181 (12%)
Frame = +2
Query: 35 SSADAAGRATPGRMT---PGRSPA----------GR---FTPRMSPASPGYAAMSPRFGG 166
++A AAG A PGR PG S A GR + P S A+ AA P +GG
Sbjct: 1164 AAAAAAGGAGPGRQQAYGPGGSGAAAAAASGAGPGRQQVYGPGGSGAAAAAAAGGPGYGG 1223
Query: 167 GLGGGPAG-GAGAYAPASPAYMATSPGMGYSPSTPALAVSSPG---YSPGYS-PTSPSV- 328
G GP G GA A A A A T G S A A + PG Y PG + P+ P +
Sbjct: 1224 QQGYGPGGAGAAAAAAAGGAGQGTRQAYGPGGSGAAAAAAGPGPSGYGPGAAGPSGPGLA 1283
Query: 329 GARGGPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAY 508
GA AAG + P G P+ Y + GT Y P + + A + P
Sbjct: 1284 GAAAAAAAGGSGPGGNGQRPS--GYGQSGT--GGQQGYGPGGSGAAAAAAAAAGGAGPGR 1339
Query: 509 Q 511
Q
Sbjct: 1340 Q 1340
Score = 55.8 bits (133), Expect = 2e-06
Identities = 60/176 (34%), Positives = 70/176 (39%), Gaps = 25/176 (14%)
Frame = +2
Query: 47 AAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAG-GAGAYAPASPA 223
AA A G PGR A + P S A+ AA P +GG G GP G GA A A A A
Sbjct: 2864 AAAVAAAGGAGPGRQQA--YGPGGSGAAAAAAAGGPGYGGQQGYGPGGAGAAAAAAAGGA 2921
Query: 224 YMATSP-----GMGYSPSTPALAVSSP-GYSPGYSPTSPSVGARGGPAAGYASPQSP--- 376
T G G + + A A S P GY PG + S GA AA A P
Sbjct: 2922 GPGTQQLYGPGGSGAAAAAAAAAGSGPSGYGPGAAGPSGPGGAGAAAAAASAGGSGPGGY 2981
Query: 377 -----GYVPTSPAYAR------PGTVVAAANVYSPSSP----AYSPFSPNYAAASS 499
GY PT P + G AAA + P Y P S AAA++
Sbjct: 2982 GQGPSGYGPTGPVGQQGYGPGGSGAAAAAAAAAGGAGPGRQQGYGPGSSGAAAAAA 3037
Score = 55.5 bits (132), Expect = 2e-06
Identities = 48/152 (31%), Positives = 58/152 (38%), Gaps = 9/152 (5%)
Frame = +2
Query: 20 FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAG 199
+ P S A AA A G PGR + P S A+ AA P +GG G GP GGAG
Sbjct: 2759 YGPGGSGAAAAAAAAAGGAGPGRQQG--YGPGSSGAAAAAAAGGPGYGGPQGYGP-GGAG 2815
Query: 200 AYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP-GYSPTSP--------SVGARGGPAA 352
A A A+ Y P A ++ G P GY P + +V A GG
Sbjct: 2816 AAAAAAAGGAGPGRQQAYGPGGSGAAAAAAGSGPSGYGPGAAGPGGTGAAAVAAAGGAGP 2875
Query: 353 GYASPQSPGYVPTSPAYARPGTVVAAANVYSP 448
G PG + A A G Y P
Sbjct: 2876 GRQQAYGPGGSGAAAAAAAGGPGYGGQQGYGP 2907
Score = 55.5 bits (132), Expect = 2e-06
Identities = 55/167 (32%), Positives = 64/167 (38%), Gaps = 12/167 (7%)
Frame = +2
Query: 41 ADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASP 220
A AA A G GR A + P S A+ AA P +GG G GP GGAGA A A+
Sbjct: 3199 AGAAAAAAAGGAGSGRQQA--YGPGGSGAAAASAAGGPGYGGQQGYGP-GGAGAAAAAAA 3255
Query: 221 AYMATSPGMGYSP-----STPALAVSSPG---YSPGYSPTSPSVGARGGPAAGYASPQSP 376
Y P + A A S PG Y PG + S GA AA A P
Sbjct: 3256 GGAGPGTQQAYGPGGSGAAAAAAAASGPGPSGYEPGAAGPSGPAGAGAAAAAAAAGGSGP 3315
Query: 377 GYVPTSPAYARPGTVVAAANVYSPSSP----AYSPFSPNYAAASSPA 505
G P + Y PS P Y P AAA++ A
Sbjct: 3316 GGYGQGP------------SGYGPSGPGGQQGYGPGGSGAAAAAAAA 3350
Score = 55.5 bits (132), Expect = 2e-06
Identities = 57/193 (29%), Positives = 68/193 (35%), Gaps = 24/193 (12%)
Frame = +2
Query: 8 ATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPA 187
A A P AA A G PGR A + P S A+ AA P +GG G GP
Sbjct: 3417 AAAGSGPSGYGPGAAAAAAAGGAGPGRQQA--YGPGGSGAAAAAAAGGPGYGGQQGYGP- 3473
Query: 188 GGAGAYAPASPAYMATSPG------MGYSPS---------------TPALAVSSPGYSPG 304
GGAGA A A+ + PG GY PS A + PG G
Sbjct: 3474 GGAGAAAAAAAG--GSGPGGYGQGPSGYGPSGSGGQGYGQGGSGAAAAAAGGAGPGRQQG 3531
Query: 305 YSPTSP---SVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFS 475
Y P S + A GGP G PG + A A G Y P + +
Sbjct: 3532 YGPGSSGAAAAAAAGGPGFGGQQGYGPGGSGAAAAAAAGGAGPGRQQAYGPGGSGAAAAA 3591
Query: 476 PNYAAASSPAYQP 514
A + Y P
Sbjct: 3592 AAAAGSGPSGYGP 3604
Score = 55.1 bits (131), Expect = 3e-06
Identities = 57/177 (32%), Positives = 69/177 (38%), Gaps = 12/177 (6%)
Frame = +2
Query: 20 FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGG-- 193
+ P S A AA A G PGR + P S A+ AA P +GG G GP G
Sbjct: 1317 YGPGGSGAAAAAAAAAGGAGPGRQQG--YGPGSSGAAAAAAAGGPGYGGQQGYGPGGAGA 1374
Query: 194 -AGAYAPASPAYMATSPGMGYSPSTPALAVSS----PGYSPGYSPTS---PSVGARGGPA 349
A A A + + G G S + A A ++ PG GY P S + A GGP
Sbjct: 1375 AAAAAAGGAGPGTQQAYGPGGSGAAAAAAAAAGGAGPGRQQGYGPGSSGAAAAAAAGGP- 1433
Query: 350 AGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASS--PAYQP 514
GY Q G P A AA + AY P AAA S Y+P
Sbjct: 1434 -GYGGQQGYG-----PGGAGAAAAAAAGGAGAGRQQAYGPGGSGAAAAGSGPSGYEP 1484
Score = 54.3 bits (129), Expect = 5e-06
Identities = 55/170 (32%), Positives = 66/170 (38%), Gaps = 10/170 (5%)
Frame = +2
Query: 20 FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGG-- 193
+ P S A AA A G PGR + P S A+ AA P +GG G GP G
Sbjct: 2095 YGPGGSGAAAAAAAAAGGAGPGRQQG--YGPGSSGAAAAAAAGGPGYGGQQGYGPGGAGA 2152
Query: 194 -AGAYAPASPAYMATSPGMGYSPSTPALAVSS----PGYSPGYSPTS---PSVGARGGPA 349
A A A + + G G S + A A ++ PG GY P S + A GGP
Sbjct: 2153 AAAAAAGGAGPGTQQAYGPGGSGAAAAAAAAAGGAGPGRQQGYGPGSSGAAAAAAAGGP- 2211
Query: 350 AGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASS 499
GY Q G P A AA + AY P AAA S
Sbjct: 2212 -GYGGQQGYG-----PGGAGAAAAAAAGGAGAGRQQAYGPGGSGAAAAGS 2255
Score = 54.3 bits (129), Expect = 5e-06
Identities = 59/197 (29%), Positives = 71/197 (36%), Gaps = 40/197 (20%)
Frame = +2
Query: 35 SSADAAGRATPGRMTP----GRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAG- 199
++A AAG A PGR G A P+ G A P G AGGAG
Sbjct: 2392 AAAAAAGGAGPGRQQAYGPGGSGAAAAAAAGTGPSGYGPGAAGPGGAGAAAAAAAGGAGP 2451
Query: 200 ----AYAP----ASPAYMATSPG----MGYSPSTPALAVSS------PGYSPGYSPTSPS 325
AY P A+ A A PG GY P A ++ PG Y P
Sbjct: 2452 GRQQAYGPGGSGAAAAAAAGGPGYGGQQGYGPGGAGAAAAAAAGGAGPGTQQAYGPGGSG 2511
Query: 326 VGARGGPAAGYASP-QSPGYVPTS-----------PAYA-----RPGTVVAAANVYSPSS 454
A AAG A P + GY P S P Y PG AAA + +
Sbjct: 2512 AAAAAAAAAGGAGPDRQQGYGPGSSGAAAAAAAGGPGYGGQQGYGPGGAGAAAAAAAAAG 2571
Query: 455 PAYSPFSPNYAAASSPA 505
P S + P A A++ A
Sbjct: 2572 PGPSGYGPGGAGAAAAA 2588
Score = 54.3 bits (129), Expect = 5e-06
Identities = 56/169 (33%), Positives = 71/169 (42%), Gaps = 14/169 (8%)
Frame = +2
Query: 35 SSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAG-----GAG 199
++A AAG A PGR + P S A+ AA P FGG G GP G A
Sbjct: 3516 AAAAAAGGAGPGRQQG-------YGPGSSGAAAAAAAGGPGFGGQQGYGPGGSGAAAAAA 3568
Query: 200 AYAPASPAYMATSP-GMGYSPSTPALAVSSP-GYSPGYS-PTSP-SVGARGGPAAGYASP 367
A A P G G + + A A S P GY P + P+ P GA GG G
Sbjct: 3569 AGGAGPGRQQAYGPGGSGAAAAAAAAAGSGPSGYGPSAAGPSGPGGSGAAGGSGPGGFGQ 3628
Query: 368 QSPGYVPTSPAYAR---PGTVVAAANVYSPSSPAYSP--FSPNYAAASS 499
GY P+ P + PG AAA + S Y P + P+ A+S+
Sbjct: 3629 GPAGYGPSGPGGQQGYGPGASGAAAAAAASGSGGYGPSQYVPSSVASSA 3677
Score = 53.9 bits (128), Expect = 7e-06
Identities = 61/168 (36%), Positives = 71/168 (42%), Gaps = 8/168 (4%)
Frame = +2
Query: 20 FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAG 199
+ P S A AA A G PGR + P S A+ AA P + G GP GGAG
Sbjct: 438 YGPGGSGAAAAAAAAAGGAGPGRQQG--YGPGGSGAAAATAAGGPGYVGQQRYGP-GGAG 494
Query: 200 AYAPASPAYMATSPGMGYSP--STPALAVSSPGYSP-GYSP-TSPSVGARGGPAAGYASP 367
A A A+ S Y P S PA A ++ G P GY P S VGA AA S
Sbjct: 495 AAAAAAAGSAGPSRQQAYGPGGSGPAAATAAAGSGPSGYGPGASGPVGADAAAAAATGS- 553
Query: 368 QSPGYVPTSPAYARPGTVVAAANVYSPSSP----AYSPFSPNYAAASS 499
PG AY PG AAA S + P Y P AAA++
Sbjct: 554 AGPG---RQQAYG-PGESGAAAAAASGAGPGRQLGYGPGGSGAAAAAA 597
Score = 53.9 bits (128), Expect = 7e-06
Identities = 55/185 (29%), Positives = 69/185 (37%), Gaps = 22/185 (11%)
Frame = +2
Query: 17 SFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAG-- 190
++ P S A AA A G P R + P S A+ AA P +GG G GP G
Sbjct: 1726 AYGPGGSGAAAAAAAAAGGAGPDRQQG--YGPGSSGAAAAAAAGGPGYGGQQGYGPGGAG 1783
Query: 191 -------------------GAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSPGYSP 313
GAGA A A+ A + G G PS + S PG GY P
Sbjct: 1784 AAAAAAAAAGPGPSGYGPGGAGAAAAAAAAGGSGPGGYGQGPS--GYSASGPGGQQGYGP 1841
Query: 314 TSPSVGARGGPAAGYA-SPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAA 490
+ A AAG A + + GY P A AAA P + P A
Sbjct: 1842 GGSGLAAAAAAAAGGAGTGRQQGYGPGGSGAA------AAAAAVGPGYGGQQGYGPGGAG 1895
Query: 491 ASSPA 505
A++ A
Sbjct: 1896 AAAAA 1900
Score = 53.5 bits (127), Expect = 9e-06
Identities = 55/169 (32%), Positives = 62/169 (36%), Gaps = 6/169 (3%)
Frame = +2
Query: 8 ATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPA 187
A A P AG A G P G GY P GG G GP
Sbjct: 2568 AAAGPGPSGYGPGGAGAAAAAAAAGGSGPGG-----YGQGPSGYGPSGP--GGQQGNGP- 2619
Query: 188 GGAGAYAPASPAYMATSPG--MGYSP--STPALAVSSPGY--SPGYSPTSPSVGARGGPA 349
GG+GA A A+ A PG GY P + A A PGY GY P G G A
Sbjct: 2620 GGSGAAAAAAAAAGGAGPGRQQGYGPGGAAAAAAAGGPGYGGQQGYGP-----GGAGAAA 2674
Query: 350 AGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAAS 496
A A PG AY PG AAA + + P S + P + S
Sbjct: 2675 AAAAGGAGPG---RQQAYG-PGGAGAAAAAAAAAGPGPSGYGPGASGPS 2719
[250][TOP]
>UniRef100_Q9NFX7 Chorion protein s18 n=1 Tax=Ceratitis capitata RepID=Q9NFX7_CERCA
Length = 332
Score = 63.5 bits (153), Expect = 8e-09
Identities = 56/170 (32%), Positives = 82/170 (48%), Gaps = 3/170 (1%)
Frame = +2
Query: 14 ASFS-PIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAG 190
AS+S P + A + P P +PA P S +P Y+A +P + PA
Sbjct: 170 ASYSAPAPAPAASYSAPAPSYSAPAPAPA----PSYSAPAPSYSAPAPSYSAP---APAP 222
Query: 191 GAGAY-APASPAYMATSPGMGYSPSTPALAVSSPGYSPG-YSPTSPSVGARGGPAAGYAS 364
AY APA Y A +P +P+ + +P +P YS +P+ + PAA Y++
Sbjct: 223 APAAYSAPAPAVYSAPAPAAYSAPAPAVYSAPAPAPAPAAYSAPAPAAYSAPAPAA-YSA 281
Query: 365 PQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQP 514
P S GY ++PA A P AAA+ S ++ A S S +Y AA +PA P
Sbjct: 282 PASSGYGASAPAAAAP----AAAHQPS-AAAARSYISGSYGAAYAPAPAP 326
Score = 58.2 bits (139), Expect = 4e-07
Identities = 40/119 (33%), Positives = 58/119 (48%), Gaps = 3/119 (2%)
Frame = +2
Query: 173 GGGPAGGAGAYAPAS--PAYMATSPGMGYSPSTPALAVSSPGYSPGYSPTSPSVGARGGP 346
G P+GG AY S +Y A +P YS PA A S +P YS +P+ P
Sbjct: 144 GSYPSGGNLAYVIQSGGSSYSAPAPAASYSAPAPAPAASYSAPAPSYSAPAPA------P 197
Query: 347 AAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPA-YQPPS 520
A Y++P +P Y +P+Y+ P A A +P+ YS +P +A +PA Y P+
Sbjct: 198 APSYSAP-APSYSAPAPSYSAPAPAPAPAAYSAPAPAVYSAPAPAAYSAPAPAVYSAPA 255