[UP]
[1][TOP]
>UniRef100_UPI0001982C31 PREDICTED: hypothetical protein n=1 Tax=Vitis vinifera
RepID=UPI0001982C31
Length = 1391
Score = 283 bits (725), Expect = 5e-75
Identities = 139/191 (72%), Positives = 166/191 (86%)
Frame = +1
Query: 1 LYRPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGY 180
+YRPLTDGD VLINRPPSIHQHS+I+LSV+VLP++SVVSINPLCCSP RGDFDGDCLHGY
Sbjct: 317 IYRPLTDGDIVLINRPPSIHQHSVIALSVKVLPLNSVVSINPLCCSPFRGDFDGDCLHGY 376
Query: 181 IPQSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQ 360
IPQSV +RVEL+ELVAL+RQLIN QSGRNLLSLSQDSL+AA+++MEDGVLLNL+++QQL+
Sbjct: 377 IPQSVDSRVELSELVALNRQLINRQSGRNLLSLSQDSLSAAHLVMEDGVLLNLFQMQQLE 436
Query: 361 MLCDKKLTPPPSIIKAPSRNNSLWSGKQLFSMLLPSNFDYSFPPNGVSVSDGELTSSFES 540
M C +L P+IIKAP + +W+GKQLFSMLLP F+Y FP NGV +SDGEL SS +
Sbjct: 437 MFCPYQL-QSPAIIKAPLLDTQVWTGKQLFSMLLPPGFNYVFPLNGVRISDGELISSSDG 495
Query: 541 SGWLRDSECNI 573
S WLRD + N+
Sbjct: 496 SAWLRDIDGNL 506
[2][TOP]
>UniRef100_A5BZZ3 DNA-directed RNA polymerase n=1 Tax=Vitis vinifera
RepID=A5BZZ3_VITVI
Length = 1393
Score = 283 bits (725), Expect = 5e-75
Identities = 139/191 (72%), Positives = 166/191 (86%)
Frame = +1
Query: 1 LYRPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGY 180
+YRPLTDGD VLINRPPSIHQHS+I+LSV+VLP++SVVSINPLCCSP RGDFDGDCLHGY
Sbjct: 402 IYRPLTDGDIVLINRPPSIHQHSVIALSVKVLPLNSVVSINPLCCSPFRGDFDGDCLHGY 461
Query: 181 IPQSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQ 360
IPQSV +RVEL+ELVAL+RQLIN QSGRNLLSLSQDSL+AA+++MEDGVLLNL+++QQL+
Sbjct: 462 IPQSVDSRVELSELVALNRQLINRQSGRNLLSLSQDSLSAAHLVMEDGVLLNLFQMQQLE 521
Query: 361 MLCDKKLTPPPSIIKAPSRNNSLWSGKQLFSMLLPSNFDYSFPPNGVSVSDGELTSSFES 540
M C +L P+IIKAP + +W+GKQLFSMLLP F+Y FP NGV +SDGEL SS +
Sbjct: 522 MFCPYQL-QSPAIIKAPLLDTQVWTGKQLFSMLLPPGFNYVFPLNGVRISDGELISSSDG 580
Query: 541 SGWLRDSECNI 573
S WLRD + N+
Sbjct: 581 SAWLRDIDGNL 591
[3][TOP]
>UniRef100_B9RC12 DNA-directed RNA polymerase n=1 Tax=Ricinus communis
RepID=B9RC12_RICCO
Length = 1475
Score = 254 bits (650), Expect = 3e-66
Identities = 127/191 (66%), Positives = 154/191 (80%)
Frame = +1
Query: 1 LYRPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGY 180
+YRPL DGD VLINRPPSIHQHS+I+LSV+VLP +SV++INPL C+P RGDFDGDCLHGY
Sbjct: 405 IYRPLNDGDTVLINRPPSIHQHSLIALSVKVLPATSVLAINPLICAPFRGDFDGDCLHGY 464
Query: 181 IPQSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQ 360
+PQSV RVEL ELVALD+QLIN Q+GRNLLS SQDSL AA+++MEDGVLL+L ++QQLQ
Sbjct: 465 VPQSVDTRVELRELVALDKQLINVQNGRNLLSFSQDSLVAAHLVMEDGVLLSLQQMQQLQ 524
Query: 361 MLCDKKLTPPPSIIKAPSRNNSLWSGKQLFSMLLPSNFDYSFPPNGVSVSDGELTSSFES 540
M C +L P++ KAPS N W+GKQL SMLLP FD+ P + V + DGEL SS E
Sbjct: 525 MFCPHQLF-SPAVRKAPSLNGCAWTGKQLISMLLPRGFDHECPSSDVYIRDGELISS-EG 582
Query: 541 SGWLRDSECNI 573
S WLRD++ N+
Sbjct: 583 SFWLRDTDGNL 593
[4][TOP]
>UniRef100_Q1L5X6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Solanum lycopersicum
RepID=Q1L5X6_SOLLC
Length = 1138
Score = 253 bits (646), Expect = 7e-66
Identities = 119/191 (62%), Positives = 158/191 (82%)
Frame = +1
Query: 1 LYRPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGY 180
++RPL DGD V+INRPPSIHQHS+I+LSVR+LPI+SV+SINPL CSP RGDFDGDCLHGY
Sbjct: 77 IHRPLVDGDVVMINRPPSIHQHSLIALSVRILPINSVLSINPLVCSPFRGDFDGDCLHGY 136
Query: 181 IPQSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQ 360
IPQS+ + +EL+ELVAL +QL++GQ+G+NLLSLS DSLTAA++++E GV L+ +++QQLQ
Sbjct: 137 IPQSIDSTIELSELVALKQQLLDGQNGQNLLSLSHDSLTAAHLILEPGVFLDRFQMQQLQ 196
Query: 361 MLCDKKLTPPPSIIKAPSRNNSLWSGKQLFSMLLPSNFDYSFPPNGVSVSDGELTSSFES 540
M C ++L +I+KAP N W+GKQLFS+LLPS+ +Y FP NGV +S+GE+ +S
Sbjct: 197 MFCPRQL-GMTAIVKAPPGNICYWTGKQLFSLLLPSDLEYVFPSNGVCISEGEIVTSSGG 255
Query: 541 SGWLRDSECNI 573
S WLRD+ N+
Sbjct: 256 SSWLRDASDNL 266
[5][TOP]
>UniRef100_Q1L5X5 DNA-directed RNA polymerase (Fragment) n=1 Tax=Antirrhinum majus
RepID=Q1L5X5_ANTMA
Length = 1112
Score = 253 bits (646), Expect = 7e-66
Identities = 126/191 (65%), Positives = 153/191 (80%)
Frame = +1
Query: 1 LYRPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGY 180
+YRPL DGD VLINRPPSIHQHS+I+LSV++LPI+SVVSINPL CSPLRGDFDGDCLHGY
Sbjct: 77 IYRPLIDGDIVLINRPPSIHQHSLIALSVKILPINSVVSINPLTCSPLRGDFDGDCLHGY 136
Query: 181 IPQSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQ 360
+PQSV RVEL ELV L++QL+NGQSG+NLLSLSQDSLTAA+++ +DGV LN E+QQLQ
Sbjct: 137 VPQSVNTRVELKELVTLNKQLVNGQSGQNLLSLSQDSLTAAHLISQDGVFLNKPEMQQLQ 196
Query: 361 MLCDKKLTPPPSIIKAPSRNNSLWSGKQLFSMLLPSNFDYSFPPNGVSVSDGELTSSFES 540
M + P+II++ SR S W+GKQLFS LLP +F++S NGV + GEL S +
Sbjct: 197 MF-SAWIPMLPAIIQSTSRETSFWTGKQLFSQLLPLDFEFSNASNGVGIKHGELVSFSDG 255
Query: 541 SGWLRDSECNI 573
S WLRDS N+
Sbjct: 256 SSWLRDSGENL 266
[6][TOP]
>UniRef100_Q9LQ02 DNA-directed RNA polymerase n=1 Tax=Arabidopsis thaliana
RepID=Q9LQ02_ARATH
Length = 1453
Score = 247 bits (631), Expect = 4e-64
Identities = 123/192 (64%), Positives = 151/192 (78%), Gaps = 2/192 (1%)
Frame = +1
Query: 1 LYRPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGY 180
++R L DGD VL+NRPPSIHQHS+I+++VR+LP +SVVS+NP+CC P RGDFDGDCLHGY
Sbjct: 397 IFRSLMDGDTVLMNRPPSIHQHSLIAMTVRILPTTSVVSLNPICCLPFRGDFDGDCLHGY 456
Query: 181 IPQSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYML-MEDGVLLNLYEIQQL 357
+PQS+ A+VEL+ELVALD+QLIN Q+GRNLLSL QDSLTAAY++ +E LN ++QQL
Sbjct: 457 VPQSIQAKVELDELVALDKQLINRQNGRNLLSLGQDSLTAAYLVNVEKNCYLNRAQMQQL 516
Query: 358 QMLCDKKLTPPPSIIKA-PSRNNSLWSGKQLFSMLLPSNFDYSFPPNGVSVSDGELTSSF 534
QM C +L PPP+IIKA PS W+G QLF ML P FDY++P N V VS+GEL S
Sbjct: 517 QMYCPFQL-PPPAIIKASPSSTEPQWTGMQLFGMLFPPGFDYTYPLNNVVVSNGELLSFS 575
Query: 535 ESSGWLRDSECN 570
E S WLRD E N
Sbjct: 576 EGSAWLRDGEGN 587
[7][TOP]
>UniRef100_B9GKP9 DNA-directed RNA polymerase n=1 Tax=Populus trichocarpa
RepID=B9GKP9_POPTR
Length = 1517
Score = 246 bits (628), Expect = 9e-64
Identities = 122/191 (63%), Positives = 150/191 (78%)
Frame = +1
Query: 1 LYRPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGY 180
+YRPL DGD VLINRPPSIHQHS+I+LSV+VLP+ SV++INPLCC P R DFDGDCLHGY
Sbjct: 438 IYRPLNDGDTVLINRPPSIHQHSLIALSVKVLPVPSVLAINPLCCPPFRADFDGDCLHGY 497
Query: 181 IPQSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQ 360
+PQSV RVEL ELV+LD+QL N QSGRNLLSLSQDSLTAA++++ED V L+ +E+QQLQ
Sbjct: 498 VPQSVDTRVELTELVSLDKQLTNWQSGRNLLSLSQDSLTAAHLVLEDDVFLSSFELQQLQ 557
Query: 361 MLCDKKLTPPPSIIKAPSRNNSLWSGKQLFSMLLPSNFDYSFPPNGVSVSDGELTSSFES 540
M ++ P +KAPS N +W+GKQL SMLLP FD+ FP V + DG+L SS E
Sbjct: 558 MFRPERFLLP--AVKAPSANALVWTGKQLISMLLPVGFDHDFPSCNVCIRDGDLVSS-EG 614
Query: 541 SGWLRDSECNI 573
S WL D++ N+
Sbjct: 615 SFWLWDTDGNL 625
[8][TOP]
>UniRef100_C0JR68 DNA-directed RNA polymerase n=1 Tax=Zea mays RepID=C0JR68_MAIZE
Length = 1444
Score = 224 bits (570), Expect = 5e-57
Identities = 109/186 (58%), Positives = 139/186 (74%)
Frame = +1
Query: 4 YRPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYI 183
YRPL DGD +LINRPPS+HQHS+I+LS ++LPI SVVSINPLCC+P GDFDGDCLHGYI
Sbjct: 417 YRPLQDGDIILINRPPSVHQHSLIALSAKILPIHSVVSINPLCCTPFAGDFDGDCLHGYI 476
Query: 184 PQSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQM 363
PQS+ +RVEL ELV+L QL+N Q GRNL+SL+ DSL AA++L V L E+QQLQM
Sbjct: 477 PQSIRSRVELEELVSLHNQLLNMQDGRNLVSLTHDSLAAAHLLTSTDVFLKKSELQQLQM 536
Query: 364 LCDKKLTPPPSIIKAPSRNNSLWSGKQLFSMLLPSNFDYSFPPNGVSVSDGELTSSFESS 543
LC TP P++IK+ + SLW+GKQLFSMLLPS ++S + + D E+ + S
Sbjct: 537 LCLSVSTPAPAVIKSMNFQGSLWTGKQLFSMLLPSGMNFSCDTE-LHIMDSEVLTCSLGS 595
Query: 544 GWLRDS 561
WL+++
Sbjct: 596 SWLQNN 601
[9][TOP]
>UniRef100_C0JR65 DNA-directed RNA polymerase n=2 Tax=Zea mays RepID=C0JR65_MAIZE
Length = 1444
Score = 224 bits (570), Expect = 5e-57
Identities = 109/186 (58%), Positives = 139/186 (74%)
Frame = +1
Query: 4 YRPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYI 183
YRPL DGD +LINRPPS+HQHS+I+LS ++LPI SVVSINPLCC+P GDFDGDCLHGYI
Sbjct: 417 YRPLQDGDIILINRPPSVHQHSLIALSAKILPIHSVVSINPLCCTPFAGDFDGDCLHGYI 476
Query: 184 PQSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQM 363
PQS+ +RVEL ELV+L QL+N Q GRNL+SL+ DSL AA++L V L E+QQLQM
Sbjct: 477 PQSIRSRVELEELVSLHNQLLNMQDGRNLVSLTHDSLAAAHLLTSTDVFLKKSELQQLQM 536
Query: 364 LCDKKLTPPPSIIKAPSRNNSLWSGKQLFSMLLPSNFDYSFPPNGVSVSDGELTSSFESS 543
LC TP P++IK+ + SLW+GKQLFSMLLPS ++S + + D E+ + S
Sbjct: 537 LCLSVSTPAPAVIKSMNFQGSLWTGKQLFSMLLPSGMNFSCDTE-LHIMDSEVLTCSLGS 595
Query: 544 GWLRDS 561
WL+++
Sbjct: 596 SWLQNN 601
[10][TOP]
>UniRef100_A7QKE4 DNA-directed RNA polymerase n=1 Tax=Vitis vinifera
RepID=A7QKE4_VITVI
Length = 1360
Score = 219 bits (559), Expect = 9e-56
Identities = 108/137 (78%), Positives = 127/137 (92%)
Frame = +1
Query: 1 LYRPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGY 180
+YRPLTDGD VLINRPPSIHQHS+I+LSV+VLP++SVVSINPLCCSP RGDFDGDCLHGY
Sbjct: 375 IYRPLTDGDIVLINRPPSIHQHSVIALSVKVLPLNSVVSINPLCCSPFRGDFDGDCLHGY 434
Query: 181 IPQSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQ 360
IPQSV +RVEL+ELVAL+RQLIN QSGRNLLSLSQDSL+AA+++MEDGVLLNL+++QQL+
Sbjct: 435 IPQSVDSRVELSELVALNRQLINRQSGRNLLSLSQDSLSAAHLVMEDGVLLNLFQMQQLE 494
Query: 361 MLCDKKLTPPPSIIKAP 411
M C +L P+IIKAP
Sbjct: 495 MFCPYQL-QSPAIIKAP 510
[11][TOP]
>UniRef100_B9G500 DNA-directed RNA polymerase n=1 Tax=Oryza sativa Japonica Group
RepID=B9G500_ORYSJ
Length = 1384
Score = 208 bits (529), Expect = 3e-52
Identities = 100/191 (52%), Positives = 136/191 (71%), Gaps = 1/191 (0%)
Frame = +1
Query: 4 YRPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYI 183
YR L DGD VL+NRPPS+HQHS+I+LS ++LPI S V+INPLCC P +GDFDGDCLHGY+
Sbjct: 366 YRLLQDGDLVLVNRPPSVHQHSLIALSAKLLPIQSAVAINPLCCDPFKGDFDGDCLHGYV 425
Query: 184 PQSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQM 363
PQ++ +RVEL+ LV+L Q++N Q GR+L+SL+ DSL AA+ L V L E QQLQ+
Sbjct: 426 PQTLQSRVELDGLVSLSGQMLNAQDGRSLVSLTHDSLAAAHQLTSADVFLQKAEFQQLQL 485
Query: 364 LCDK-KLTPPPSIIKAPSRNNSLWSGKQLFSMLLPSNFDYSFPPNGVSVSDGELTSSFES 540
LC TP PS++K+ + SLW+GKQLF MLLPS + SF + + D E+ +
Sbjct: 486 LCSSISPTPEPSVVKSANFQGSLWTGKQLFGMLLPSGMNISFDQK-LHIKDSEVLTCSSG 544
Query: 541 SGWLRDSECNI 573
S WL+++ ++
Sbjct: 545 SFWLQNNTSSV 555
[12][TOP]
>UniRef100_B8BED0 DNA-directed RNA polymerase n=1 Tax=Oryza sativa Indica Group
RepID=B8BED0_ORYSI
Length = 1384
Score = 208 bits (529), Expect = 3e-52
Identities = 100/191 (52%), Positives = 136/191 (71%), Gaps = 1/191 (0%)
Frame = +1
Query: 4 YRPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYI 183
YR L DGD VL+NRPPS+HQHS+I+LS ++LPI S V+INPLCC P +GDFDGDCLHGY+
Sbjct: 366 YRLLQDGDLVLVNRPPSVHQHSLIALSAKLLPIQSAVAINPLCCDPFKGDFDGDCLHGYV 425
Query: 184 PQSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQM 363
PQ++ +RVEL+ LV+L Q++N Q GR+L+SL+ DSL AA+ L V L E QQLQ+
Sbjct: 426 PQTLQSRVELDGLVSLSGQMLNAQDGRSLVSLTHDSLAAAHQLTSADVFLQKAEFQQLQL 485
Query: 364 LCDK-KLTPPPSIIKAPSRNNSLWSGKQLFSMLLPSNFDYSFPPNGVSVSDGELTSSFES 540
LC TP PS++K+ + SLW+GKQLF MLLPS + SF + + D E+ +
Sbjct: 486 LCSSISPTPEPSVVKSANFQGSLWTGKQLFGMLLPSGMNISFDQK-LHIKDSEVLTCSSG 544
Query: 541 SGWLRDSECNI 573
S WL+++ ++
Sbjct: 545 SFWLQNNTSSV 555
[13][TOP]
>UniRef100_Q01JX0 DNA-directed RNA polymerase n=1 Tax=Oryza sativa RepID=Q01JX0_ORYSA
Length = 1407
Score = 200 bits (509), Expect = 6e-50
Identities = 100/191 (52%), Positives = 130/191 (68%), Gaps = 1/191 (0%)
Frame = +1
Query: 4 YRPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYI 183
YR L DGD VL+NRPPS+HQHS+I+LS ++L S VSINPLCC P +GDFDGDCLHGYI
Sbjct: 389 YRLLQDGDLVLVNRPPSVHQHSLIALSAKLLSTQSAVSINPLCCDPFKGDFDGDCLHGYI 448
Query: 184 PQSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQM 363
PQ + +R+EL ELV+L QL+N Q GR+L+SL+ DSL AA+ L V L E QQLQM
Sbjct: 449 PQCLQSRIELEELVSLSGQLLNQQDGRSLVSLTHDSLAAAHQLTNADVFLEKAEFQQLQM 508
Query: 364 LCDK-KLTPPPSIIKAPSRNNSLWSGKQLFSMLLPSNFDYSFPPNGVSVSDGELTSSFES 540
L LTP PS+ K+ + LW+GKQLF MLLP + SF + + D E+ +
Sbjct: 509 LSSSISLTPMPSVFKSTNSQGPLWTGKQLFGMLLPYGMNISFDQK-LHIKDSEVLTCSSG 567
Query: 541 SGWLRDSECNI 573
S WL+++ ++
Sbjct: 568 SFWLQNNTSSL 578
[14][TOP]
>UniRef100_B8AT49 DNA-directed RNA polymerase n=1 Tax=Oryza sativa Indica Group
RepID=B8AT49_ORYSI
Length = 1598
Score = 200 bits (509), Expect = 6e-50
Identities = 100/191 (52%), Positives = 130/191 (68%), Gaps = 1/191 (0%)
Frame = +1
Query: 4 YRPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYI 183
YR L DGD VL+NRPPS+HQHS+I+LS ++L S VSINPLCC P +GDFDGDCLHGYI
Sbjct: 362 YRLLQDGDLVLVNRPPSVHQHSLIALSAKLLSTQSAVSINPLCCDPFKGDFDGDCLHGYI 421
Query: 184 PQSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQM 363
PQ + +R+EL ELV+L QL+N Q GR+L+SL+ DSL AA+ L V L E QQLQM
Sbjct: 422 PQCLQSRIELEELVSLSGQLLNQQDGRSLVSLTHDSLAAAHQLTNADVFLEKAEFQQLQM 481
Query: 364 LCDK-KLTPPPSIIKAPSRNNSLWSGKQLFSMLLPSNFDYSFPPNGVSVSDGELTSSFES 540
L LTP PS+ K+ + LW+GKQLF MLLP + SF + + D E+ +
Sbjct: 482 LSSSISLTPMPSVFKSTNSQGPLWTGKQLFGMLLPYGMNISFDQK-LHIKDSEVLTCSSG 540
Query: 541 SGWLRDSECNI 573
S WL+++ ++
Sbjct: 541 SFWLQNNTSSL 551
[15][TOP]
>UniRef100_B9FC30 DNA-directed RNA polymerase n=1 Tax=Oryza sativa Japonica Group
RepID=B9FC30_ORYSJ
Length = 1623
Score = 200 bits (508), Expect = 7e-50
Identities = 100/191 (52%), Positives = 129/191 (67%), Gaps = 1/191 (0%)
Frame = +1
Query: 4 YRPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYI 183
YR L DGD VL+NRPPS+HQHS+I+LS ++L S VSINPLCC P +GDFDGDCLHGYI
Sbjct: 383 YRLLQDGDLVLVNRPPSVHQHSLIALSAKLLSTQSAVSINPLCCDPFKGDFDGDCLHGYI 442
Query: 184 PQSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQM 363
PQ + +R+EL ELV L QL+N Q GR+L+SL+ DSL AA+ L V L E QQLQM
Sbjct: 443 PQCLQSRIELEELVGLSGQLLNQQDGRSLVSLTHDSLAAAHQLTNADVFLEKAEFQQLQM 502
Query: 364 LCDK-KLTPPPSIIKAPSRNNSLWSGKQLFSMLLPSNFDYSFPPNGVSVSDGELTSSFES 540
L LTP PS+ K+ + LW+GKQLF MLLP + SF + + D E+ +
Sbjct: 503 LSSSISLTPMPSVFKSTNSQGPLWTGKQLFGMLLPYGMNISFDQK-LHIKDSEVLTCSSG 561
Query: 541 SGWLRDSECNI 573
S WL+++ ++
Sbjct: 562 SFWLQNNTSSL 572
[16][TOP]
>UniRef100_Q7XTZ3 DNA-directed RNA polymerase n=1 Tax=Oryza sativa Japonica Group
RepID=Q7XTZ3_ORYSJ
Length = 1664
Score = 174 bits (440), Expect = 6e-42
Identities = 86/151 (56%), Positives = 105/151 (69%), Gaps = 1/151 (0%)
Frame = +1
Query: 4 YRPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYI 183
YR L DGD VL+N PPS+HQHS+I+LS ++L S VSINPLCC P +GDFDGDCLHGYI
Sbjct: 394 YRLLQDGDLVLVNSPPSVHQHSLIALSAKLLSTQSAVSINPLCCDPFKGDFDGDCLHGYI 453
Query: 184 PQSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQM 363
PQ + +R+EL ELV L QL+N Q GR+L+SL+ DSL AA+ L V L E QQLQM
Sbjct: 454 PQCLQSRIELEELVGLSGQLLNQQDGRSLVSLTHDSLAAAHQLTNADVFLEKAEFQQLQM 513
Query: 364 LCDK-KLTPPPSIIKAPSRNNSLWSGKQLFS 453
L LTP PS+ K+ + LW+ LFS
Sbjct: 514 LSSSISLTPMPSVFKSTNSQGPLWTDLYLFS 544
[17][TOP]
>UniRef100_Q1L5Y5 DNA-directed RNA polymerase (Fragment) n=1 Tax=Chara hispida
RepID=Q1L5Y5_9VIRI
Length = 1144
Score = 142 bits (358), Expect = 2e-32
Identities = 79/202 (39%), Positives = 122/202 (60%), Gaps = 19/202 (9%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R L+DGD +++NR PS+H+HS+I+ ++P +S INP+ C P DFDGD ++ ++P
Sbjct: 363 RKLSDGDIIVLNRQPSLHRHSVIAFRACIVP-TSAFGINPVVCGPFNADFDGDEMNLFVP 421
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQML 366
S+ A+ E +L+ L +Q+++ Q GR ++SL QDSL AA+ML + V LN E+ QL M
Sbjct: 422 TSLEAQAEARQLLLLRKQVVSSQDGRAIVSLRQDSLLAAHMLTSEYVFLNRQEVSQLAMC 481
Query: 367 CDK-----------KLTPPPSIIKAPS------RNNSLWSGKQLFSMLLPSNFDYSF-PP 492
D+ + P P+I+K P+ ++ LW+G+Q+F M L F+Y +
Sbjct: 482 ADEFGQPVGVDSRSTILPEPAILKWPAXKHQNGESSGLWTGQQVFGMSLFKGFEYDWLDE 541
Query: 493 NGVSVSDGE-LTSSFESSGWLR 555
+GV + DGE L S SS WLR
Sbjct: 542 DGVLIRDGELLVSEGLSSAWLR 563
[18][TOP]
>UniRef100_A9SIX8 DNA-directed RNA polymerase n=1 Tax=Physcomitrella patens subsp.
patens RepID=A9SIX8_PHYPA
Length = 2458
Score = 134 bits (338), Expect = 4e-30
Identities = 75/189 (39%), Positives = 115/189 (60%), Gaps = 1/189 (0%)
Frame = +1
Query: 1 LYRPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGY 180
++R + DGD V +NRPPS+H+HS+++L V+V V++INPL C P DFDGD H +
Sbjct: 803 IHRNIQDGDFVYVNRPPSVHKHSLMALKVQV-HYGLVLTINPLVCPPFNADFDGDIFHVF 861
Query: 181 IPQSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQ 360
IPQS+ A EL L+A+ +Q+I+ G+ LL L+QD+L AAY+L +L++ + QL
Sbjct: 862 IPQSLQAIAELEHLMAVPQQIISDHGGQPLLGLTQDTLLAAYLLTSSKLLVDKAGMDQL- 920
Query: 361 MLCDKKLTPPPSIIKAPSRNNSLWSGKQLFSMLLPSNFDYSFPPNGVSVSDGELTSSFES 540
L K P +I+K+P + W+G+Q+F + LP++ P V + GE+
Sbjct: 921 CLWALKQPPDAAIVKSP-KGGPFWTGEQIFGLTLPTDLQVGAPHEEVFIEGGEVIRWSNG 979
Query: 541 SGWLR-DSE 564
+ LR DSE
Sbjct: 980 AKSLRKDSE 988
[19][TOP]
>UniRef100_A9SIR4 DNA-directed RNA polymerase n=1 Tax=Physcomitrella patens subsp.
patens RepID=A9SIR4_PHYPA
Length = 1795
Score = 134 bits (336), Expect = 6e-30
Identities = 66/174 (37%), Positives = 110/174 (63%)
Frame = +1
Query: 1 LYRPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGY 180
++R + DGD V +NRPPS+H+HS+++L V + +++NPL C P DFDGD H +
Sbjct: 652 VHRHIQDGDYVYVNRPPSVHRHSLVALKVHIHH-QPTITVNPLICPPFSADFDGDIFHIF 710
Query: 181 IPQSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQ 360
PQS+ A EL++L+A+ +Q+I+ G+ LL L+QD+L AA++L + L+ + QL
Sbjct: 711 APQSLQAIAELDQLMAVKQQVISEHGGQPLLELTQDTLLAAHLLTSKKLFLDKATMDQLC 770
Query: 361 MLCDKKLTPPPSIIKAPSRNNSLWSGKQLFSMLLPSNFDYSFPPNGVSVSDGEL 522
+ KK P +I+K+P + W+G+Q+F++ LP +F+ P V + GE+
Sbjct: 771 LWASKK-PPEAAILKSP-KGGPFWTGEQVFALTLPEDFELGAPQEEVFIQGGEI 822
[20][TOP]
>UniRef100_A7Q5G0 DNA-directed RNA polymerase n=1 Tax=Vitis vinifera
RepID=A7Q5G0_VITVI
Length = 1830
Score = 119 bits (299), Expect = 1e-25
Identities = 68/159 (42%), Positives = 96/159 (60%)
Frame = +1
Query: 1 LYRPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGY 180
++R + DGD V INRPP+ H+HS+ +LSV V V INPL C PL DFDGDC+H +
Sbjct: 400 VHRRIMDGDIVFINRPPTTHKHSLQALSVYVHD-DHTVKINPLICGPLSADFDGDCVHLF 458
Query: 181 IPQSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQ 360
PQS+ A+ E+ EL ++++QL++ SG L L+ DSL + +L E LN QQL
Sbjct: 459 YPQSLGAKAEVLELFSVEKQLLSSHSGNLNLQLATDSLLSLKVLFE-RYFLNKAAAQQLV 517
Query: 361 MLCDKKLTPPPSIIKAPSRNNSLWSGKQLFSMLLPSNFD 477
M L P P+++K+P + W+ Q+ LPS FD
Sbjct: 518 MFVSMSL-PRPALLKSPC-SGPCWTALQILQTALPSYFD 554
[21][TOP]
>UniRef100_B9RGA8 DNA-directed RNA polymerase n=1 Tax=Ricinus communis
RepID=B9RGA8_RICCO
Length = 991
Score = 118 bits (296), Expect = 3e-25
Identities = 67/161 (41%), Positives = 95/161 (59%)
Frame = +1
Query: 1 LYRPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGY 180
++R + DGD V INRPP+ H+HS+ +LSV V V INPL C PL DFDGDC+H +
Sbjct: 402 VHRRIMDGDMVFINRPPTTHKHSLQALSVYVHD-GHTVKINPLICGPLSADFDGDCIHLF 460
Query: 181 IPQSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQ 360
PQS+AA+ E+ EL ++++QL++ SG L L+ DSL + M + L+ QQL
Sbjct: 461 YPQSLAAKAEVLELFSVEKQLLSSHSGNLNLQLTSDSL-LSLKTMFNTYFLDRAAAQQLA 519
Query: 361 MLCDKKLTPPPSIIKAPSRNNSLWSGKQLFSMLLPSNFDYS 483
M P P++ KA + +W+ Q+ LPS FD S
Sbjct: 520 MFVSSSSLPQPALWKAHC-SVPIWTALQILQTALPSQFDCS 559
[22][TOP]
>UniRef100_B3T303 DNA-directed RNA polymerase n=1 Tax=uncultured marine crenarchaeote
HF4000_ANIW93I24 RepID=B3T303_9ARCH
Length = 1264
Score = 116 bits (291), Expect = 1e-24
Identities = 74/186 (39%), Positives = 106/186 (56%), Gaps = 12/186 (6%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R L+DGD VL NR PS+HQ S+++ VRVLP ++P C P DFDGD ++ ++P
Sbjct: 412 RHLSDGDVVLFNRQPSLHQMSIMAHHVRVLP-GKTFRLHPSVCPPYNADFDGDEMNLHVP 470
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQML 366
QS AR E L+ + QLI+ + G ++ +D +T AY+L +D L E ML
Sbjct: 471 QSEEARAEAMLLMRVQEQLISPRFGGPIIGALRDFITGAYLLTKDDTTLTKQEFSNYAML 530
Query: 367 --CDKKLTPPPSIIKAPSRNNSLWSGKQLFSMLLPSNFDY------SFPPNG----VSVS 510
D+KL P K ++N SL++GKQLFS+ LPS+F++ S NG V +
Sbjct: 531 GGYDEKLPEP----KIKNKNGSLYTGKQLFSLFLPSDFNFVMTSKWSRGTNGKQKDVVIK 586
Query: 511 DGELTS 528
+GEL S
Sbjct: 587 NGELVS 592
[23][TOP]
>UniRef100_B9GM06 DNA-directed RNA polymerase n=1 Tax=Populus trichocarpa
RepID=B9GM06_POPTR
Length = 842
Score = 115 bits (287), Expect = 3e-24
Identities = 66/161 (40%), Positives = 97/161 (60%)
Frame = +1
Query: 1 LYRPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGY 180
++R + DGD V INRPP+ H+HS+ +LSV V V INPL C PL DFDGDC+H +
Sbjct: 320 VHRRIIDGDVVFINRPPTTHKHSLQALSVYVHD-DHTVKINPLICGPLSADFDGDCVHLF 378
Query: 181 IPQSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQ 360
PQS+AA+ E+ EL ++++QL++ SG L L+ DSL + M+ + L+ QQL
Sbjct: 379 YPQSLAAKAEVLELFSVEKQLLSSHSGNLNLQLTTDSLLSLKMIFK-ACFLDKSAAQQLA 437
Query: 361 MLCDKKLTPPPSIIKAPSRNNSLWSGKQLFSMLLPSNFDYS 483
M L P P+++K + W+ Q+ M LP+ F+ S
Sbjct: 438 MFVSPDL-PQPALLKV-NCIRPYWTAHQILQMALPTCFNCS 476
[24][TOP]
>UniRef100_Q5D869 DNA-directed RNA polymerase n=1 Tax=Arabidopsis thaliana
RepID=Q5D869_ARATH
Length = 1976
Score = 114 bits (285), Expect = 5e-24
Identities = 62/155 (40%), Positives = 99/155 (63%)
Frame = +1
Query: 1 LYRPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGY 180
++R + DGD V INRPP+ H+HS+ +L V V + V INPL CSPL DFDGDC+H +
Sbjct: 400 VHRRVMDGDVVFINRPPTTHKHSLQALRVYVHE-DNTVKINPLMCSPLSADFDGDCVHLF 458
Query: 181 IPQSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQ 360
PQS++A+ E+ EL ++++QL++ +G+ +L + DSL + +++E V L+ QQL
Sbjct: 459 YPQSLSAKAEVMELFSVEKQLLSSHTGQLILQMGSDSLLSLRVMLE-RVFLDKATAQQLA 517
Query: 361 MLCDKKLTPPPSIIKAPSRNNSLWSGKQLFSMLLP 465
M L PPP++ K+ S++ W+ Q+ + P
Sbjct: 518 MYGSLSL-PPPALRKS-SKSGPAWTVFQILQLAFP 550
[25][TOP]
>UniRef100_Q1L5X4 DNA-directed RNA polymerase n=1 Tax=Arabidopsis thaliana
RepID=Q1L5X4_ARATH
Length = 1976
Score = 114 bits (285), Expect = 5e-24
Identities = 62/155 (40%), Positives = 99/155 (63%)
Frame = +1
Query: 1 LYRPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGY 180
++R + DGD V INRPP+ H+HS+ +L V V + V INPL CSPL DFDGDC+H +
Sbjct: 400 VHRRVMDGDVVFINRPPTTHKHSLQALRVYVHE-DNTVKINPLMCSPLSADFDGDCVHLF 458
Query: 181 IPQSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQ 360
PQS++A+ E+ EL ++++QL++ +G+ +L + DSL + +++E V L+ QQL
Sbjct: 459 YPQSLSAKAEVMELFSVEKQLLSSHTGQLILQMGSDSLLSLRVMLE-RVFLDKATAQQLA 517
Query: 361 MLCDKKLTPPPSIIKAPSRNNSLWSGKQLFSMLLP 465
M L PPP++ K+ S++ W+ Q+ + P
Sbjct: 518 MYGSLSL-PPPALRKS-SKSGPAWTVFQILQLAFP 550
[26][TOP]
>UniRef100_O04206 DNA-directed RNA polymerase n=1 Tax=Arabidopsis thaliana
RepID=O04206_ARATH
Length = 888
Score = 114 bits (285), Expect = 5e-24
Identities = 62/155 (40%), Positives = 99/155 (63%)
Frame = +1
Query: 1 LYRPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGY 180
++R + DGD V INRPP+ H+HS+ +L V V + V INPL CSPL DFDGDC+H +
Sbjct: 351 VHRRVMDGDVVFINRPPTTHKHSLQALRVYVHE-DNTVKINPLMCSPLSADFDGDCVHLF 409
Query: 181 IPQSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQ 360
PQS++A+ E+ EL ++++QL++ +G+ +L + DSL + +++E V L+ QQL
Sbjct: 410 YPQSLSAKAEVMELFSVEKQLLSSHTGQLILQMGSDSLLSLRVMLE-RVFLDKATAQQLA 468
Query: 361 MLCDKKLTPPPSIIKAPSRNNSLWSGKQLFSMLLP 465
M L PPP++ K+ S++ W+ Q+ + P
Sbjct: 469 MYGSLSL-PPPALRKS-SKSGPAWTVFQILQLAFP 501
[27][TOP]
>UniRef100_Q5D868 DNA-directed RNA polymerase (Fragment) n=1 Tax=Spinacia oleracea
RepID=Q5D868_SPIOL
Length = 1902
Score = 112 bits (281), Expect = 2e-23
Identities = 67/168 (39%), Positives = 96/168 (57%), Gaps = 9/168 (5%)
Frame = +1
Query: 1 LYRPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGY 180
++R + DGD V INRPP+ H+HS+ +L V + VV INPL C PL DFDGDC+H +
Sbjct: 191 VHRRIMDGDIVFINRPPTTHKHSLQALRVYIHD-DHVVKINPLMCGPLAADFDGDCVHLF 249
Query: 181 IPQSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQ 360
PQS++AR E+ EL ++++QL++ SG L LS DSL + + E L+ QL
Sbjct: 250 YPQSLSARAEVLELFSVEKQLLSSHSGNLNLQLSTDSLLSLKTMFE-VYFLDRASANQLA 308
Query: 361 MLCDKKLTPPPSIIKAPSRN---------NSLWSGKQLFSMLLPSNFD 477
M L P P++ KA S N W+ +Q+ LPS+F+
Sbjct: 309 MYA-SSLLPSPALWKACSSNAKKKKAHSSGPRWTAQQVLQTALPSHFE 355
[28][TOP]
>UniRef100_B9GWX9 DNA-directed RNA polymerase n=1 Tax=Populus trichocarpa
RepID=B9GWX9_POPTR
Length = 924
Score = 112 bits (279), Expect = 3e-23
Identities = 66/161 (40%), Positives = 96/161 (59%)
Frame = +1
Query: 1 LYRPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGY 180
++R + DGD V INRPP+ H+HS+ +LSV V V INPL C PL DFDGDC+H +
Sbjct: 402 VHRRIMDGDIVFINRPPTTHKHSLQALSVYVHD-DHAVKINPLICGPLSADFDGDCVHLF 460
Query: 181 IPQSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQ 360
PQS+AA+ E+ EL ++++QL++ SG L L+ DSL + M+ + L QQL
Sbjct: 461 YPQSLAAKAEVLELFSVEKQLLSSHSGNLNLQLTTDSLLSLKMMFK-ACFLGKSAAQQLA 519
Query: 361 MLCDKKLTPPPSIIKAPSRNNSLWSGKQLFSMLLPSNFDYS 483
M L P P+++K + W+ Q+ M LP+ F+ S
Sbjct: 520 MFISPYL-PQPALLKV-NCFFPHWTAHQILQMALPACFNCS 558
[29][TOP]
>UniRef100_B3T8B1 DNA-directed RNA polymerase n=1 Tax=uncultured marine crenarchaeote
HF4000_APKG5C13 RepID=B3T8B1_9ARCH
Length = 1268
Score = 112 bits (279), Expect = 3e-23
Identities = 65/160 (40%), Positives = 95/160 (59%), Gaps = 2/160 (1%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R L+DGD VL NR PS+HQ S+++ VRVLP ++P C P DFDGD ++ ++P
Sbjct: 412 RHLSDGDVVLFNRQPSLHQMSIMAHHVRVLP-GKTFRLHPSVCPPYNADFDGDEMNLHVP 470
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQML 366
QS AR E L+ + QLI+ + G ++ +D +T AY+L +D L E ML
Sbjct: 471 QSEEARAEAMLLMRVQEQLISPRFGGPIIGGLRDFITGAYLLTKDDTTLTKQEFSNFAML 530
Query: 367 --CDKKLTPPPSIIKAPSRNNSLWSGKQLFSMLLPSNFDY 480
D+KL P K ++N L++GKQLFS+ LPS+F++
Sbjct: 531 GGYDEKLPEP----KINNKNGLLYTGKQLFSLFLPSDFNF 566
[30][TOP]
>UniRef100_A8A925 DNA-directed RNA polymerase n=1 Tax=Ignicoccus hospitalis KIN4/I
RepID=A8A925_IGNH4
Length = 889
Score = 111 bits (277), Expect = 5e-23
Identities = 65/172 (37%), Positives = 102/172 (59%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R L DGD VL NR PS+H+ S+++ VRVLP + PL C P DFDGD ++ ++P
Sbjct: 418 RHLQDGDVVLFNRQPSLHRMSIMAHLVRVLP-GKTFRLCPLVCPPYNADFDGDEMNLHVP 476
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQML 366
QS AR E EL+ +++ +++ + G ++ QD ++ AY+L LL+ ++Q+L +
Sbjct: 477 QSEEARAEALELMLVEKHILSPRYGGPIIGGLQDYISGAYLLTTVATLLDRSDVQELLGV 536
Query: 367 CDKKLTPPPSIIKAPSRNNSLWSGKQLFSMLLPSNFDYSFPPNGVSVSDGEL 522
+ P I +P ++W+GKQLFS+ LP +F+YS N +S GEL
Sbjct: 537 TGYEGELPEPAILSP---KTVWTGKQLFSVFLPKDFNYSGKAN---ISTGEL 582
[31][TOP]
>UniRef100_B3T7L4 DNA-directed RNA polymerase n=1 Tax=uncultured marine crenarchaeote
HF4000_APKG3E18 RepID=B3T7L4_9ARCH
Length = 1273
Score = 110 bits (276), Expect = 6e-23
Identities = 73/186 (39%), Positives = 103/186 (55%), Gaps = 12/186 (6%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R L+DGD VL NR PS+HQ S+++ VRVLP ++P C P DFDGD ++ ++P
Sbjct: 417 RHLSDGDIVLFNRQPSLHQMSIMAHHVRVLP-GKTFRLHPSVCPPYNADFDGDEMNLHVP 475
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQML 366
QS AR E L+ + QLI+ + G ++ +D +T Y+L +D L E ML
Sbjct: 476 QSEEARAEAMLLMRVQEQLISPRFGGPIIGGLRDFITGVYLLTKDDTTLTKQEFSNYAML 535
Query: 367 --CDKKLTPPPSIIKAPSRNNSLWSGKQLFSMLLPSNFDY------SFPPNG----VSVS 510
D KL P K S+N L++GKQLFS+ LPS+F++ S NG V +
Sbjct: 536 GRYDGKLPEP----KINSKNGLLYTGKQLFSLFLPSDFNFVMTSKWSRGTNGKQKDVVIK 591
Query: 511 DGELTS 528
+GEL S
Sbjct: 592 NGELVS 597
[32][TOP]
>UniRef100_B3T842 DNA-directed RNA polymerase (Fragment) n=1 Tax=uncultured marine
crenarchaeote HF4000_APKG4H17 RepID=B3T842_9ARCH
Length = 993
Score = 110 bits (275), Expect = 8e-23
Identities = 71/186 (38%), Positives = 104/186 (55%), Gaps = 12/186 (6%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R L+DGD VL NR PS+HQ S+++ VRVLP ++P C P DFDGD ++ ++P
Sbjct: 141 RHLSDGDVVLFNRQPSLHQMSIMAHHVRVLP-GKTFRLHPSVCPPYNADFDGDEMNLHVP 199
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQML 366
QS AR E L+ + QLI+ + G ++ +D +T AY+L +D L E ML
Sbjct: 200 QSEEARAEAIMLMRVQEQLISPRFGGPIIGGLRDFITGAYLLTKDDTTLTKQEFSNFAML 259
Query: 367 --CDKKLTPPPSIIKAPSRNNSLWSGKQLFSMLLPSNFD------YSFPPNG----VSVS 510
D +L P K ++N L++GKQLFS+ LPS+F+ +S NG + +
Sbjct: 260 GGYDGELPEP----KIKNKNGPLYTGKQLFSLFLPSDFNLILTSKWSKGTNGKLKDIVIK 315
Query: 511 DGELTS 528
+GEL S
Sbjct: 316 NGELVS 321
[33][TOP]
>UniRef100_A0RXW9 DNA-directed RNA polymerase n=1 Tax=Cenarchaeum symbiosum
RepID=A0RXW9_CENSY
Length = 1260
Score = 106 bits (264), Expect = 1e-21
Identities = 66/184 (35%), Positives = 96/184 (52%), Gaps = 10/184 (5%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R L DGD V+ NR PS+HQ S+++ VRVLP ++P C P DFDGD ++ ++P
Sbjct: 412 RHLLDGDIVMFNRQPSLHQMSIMAHHVRVLP-GKTFRLHPSVCPPYNADFDGDEMNLHVP 470
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQML 366
QS AR E L+ + QLI+ + G ++ +D +T +Y+L +D L E L ML
Sbjct: 471 QSEEARAEAMLLMRVQDQLISPRYGGPIIGGLRDFITGSYLLTKDDTTLTREEFTNLAML 530
Query: 367 CDKKLTPPPSIIKAPSRNNSLWSGKQLFSMLLPSNFDYSF----------PPNGVSVSDG 516
D + P L++GKQLFS+ LP +F+Y P V + +G
Sbjct: 531 GDY-----GGALPKPGAKGQLFTGKQLFSLFLPKDFNYIITSKWSKGTKGTPKDVVIKNG 585
Query: 517 ELTS 528
EL S
Sbjct: 586 ELIS 589
[34][TOP]
>UniRef100_Q1L5X8 DNA-directed RNA polymerase (Fragment) n=1 Tax=Sphagnum sp. JL-2005
RepID=Q1L5X8_9BRYO
Length = 969
Score = 105 bits (263), Expect = 2e-21
Identities = 55/139 (39%), Positives = 84/139 (60%)
Frame = +1
Query: 139 PLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLME 318
P DFDGD H ++PQSV A VEL EL+ + +Q+I Q G LL L+QD+L AA+++
Sbjct: 1 PYNADFDGDIFHIFVPQSVEAMVELKELMTVQQQIICSQGGLPLLGLTQDTLLAAHLMTC 60
Query: 319 DGVLLNLYEIQQLQMLCDKKLTPPPSIIKAPSRNNSLWSGKQLFSMLLPSNFDYSFPPNG 498
V L+ + QLQM + P +I+K+P + LW+G+QL+S+ LP+ D+
Sbjct: 61 QKVFLDKVSMDQLQMWSSAAVVPEAAILKSP-KGGPLWTGEQLYSLTLPAGVDFHTLDGE 119
Query: 499 VSVSDGELTSSFESSGWLR 555
V + +GE+ + SS WL+
Sbjct: 120 VLIRNGEILKTGFSSKWLQ 138
[35][TOP]
>UniRef100_Q9BNP9 DNA-directed RNA polymerase (Fragment) n=1 Tax=Bothropolys
multidentatus RepID=Q9BNP9_9MYRI
Length = 624
Score = 105 bits (263), Expect = 2e-21
Identities = 64/169 (37%), Positives = 99/169 (58%), Gaps = 8/169 (4%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R + DGD V+ NR P++H+ SM+ +RVLP S+ +N +P DFDGD ++ ++P
Sbjct: 87 RHVRDGDVVIFNRQPTLHKMSMMGHHIRVLPWSTF-RMNLSVTTPYNADFDGDEMNLHVP 145
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQM- 363
QS+ R E+ EL + RQ+I QS R ++ + QD+LTA + + V L ++ L M
Sbjct: 146 QSMETRAEIEELAIVPRQIITPQSNRPVMGIVQDTLTAVRKMTKRDVFLEKDQMMNLLMF 205
Query: 364 --LCDKKLTPPPSIIKAPSRNNSLWSGKQLFSMLLPSNFD-----YSFP 489
+ D K+ P P+I+K LW+GKQLFS+++P N + YS P
Sbjct: 206 LPIWDGKM-PMPAILKP----KPLWTGKQLFSLIIPGNVNCIRAHYSHP 249
[36][TOP]
>UniRef100_UPI00005A0B19 PREDICTED: similar to polymerase (RNA) II (DNA directed)
polypeptide A isoform 5 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B19
Length = 1693
Score = 104 bits (260), Expect = 4e-21
Identities = 64/180 (35%), Positives = 102/180 (56%), Gaps = 8/180 (4%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R + DGD V+ NR P++H+ SM+ VR+LP S+ +N +P DFDGD ++ ++P
Sbjct: 448 RHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTF-RLNLSVTTPYNADFDGDEMNLHLP 506
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQML 366
QS+ R E+ EL + R ++ QS R ++ + QD+LTA + V L E+ L M
Sbjct: 507 QSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMF 566
Query: 367 C---DKKLTPPPSIIKAPSRNNSLWSGKQLFSMLLPSNFD-----YSFPPNGVSVSDGEL 522
D K+ P P+I+K LW+GKQ+FS+++P + + + P + SV +GEL
Sbjct: 567 LSTWDGKV-PQPAILKP----RPLWTGKQIFSLIIPGHINCIRTHSTHPDDEDSVENGEL 621
[37][TOP]
>UniRef100_Q9NJK7 DNA-directed RNA polymerase (Fragment) n=1 Tax=Nebalia hessleri
RepID=Q9NJK7_9CRUS
Length = 624
Score = 104 bits (260), Expect = 4e-21
Identities = 59/160 (36%), Positives = 95/160 (59%), Gaps = 3/160 (1%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R +TDGD V+ NR P++H+ SM+ V+VLP S+ +N SP DFDGD ++ ++P
Sbjct: 87 RHITDGDLVIFNRQPTLHKMSMMGHRVKVLPWSTF-RMNLSVTSPYNADFDGDEMNLHVP 145
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQM- 363
QS+ R E+ + R +I QS + ++ + QD+LTA + + V L ++E+ M
Sbjct: 146 QSMETRAEIENMHVTPRMIITPQSNKPVMGIVQDTLTAVRKMTKRDVFLEMHEMMNCLMF 205
Query: 364 --LCDKKLTPPPSIIKAPSRNNSLWSGKQLFSMLLPSNFD 477
+ D K+ P P+I+K LW+GKQLF+M++P N +
Sbjct: 206 LPIWDGKM-PQPAILKP----KPLWTGKQLFTMIIPGNLN 240
[38][TOP]
>UniRef100_A9A460 DNA-directed RNA polymerase n=1 Tax=Nitrosopumilus maritimus SCM1
RepID=A9A460_NITMS
Length = 1263
Score = 104 bits (260), Expect = 4e-21
Identities = 60/158 (37%), Positives = 91/158 (57%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R L DGD V+ NR PS+HQ S+++ VRVLP ++P C P DFDGD ++ ++P
Sbjct: 412 RHLADGDIVMFNRQPSLHQMSIMAHYVRVLP-GKTFRLHPSVCPPYNADFDGDEMNLHVP 470
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQML 366
QS AR E L+ + QLI+ + G ++ +D +T AY+L +D +L + E L ML
Sbjct: 471 QSEEARAEAILLMRVQDQLISPRYGGPIIGALRDFVTGAYLLTKDDTVLTVQEFSNLAML 530
Query: 367 CDKKLTPPPSIIKAPSRNNSLWSGKQLFSMLLPSNFDY 480
T P +++ ++GKQLFS+ LP +F+Y
Sbjct: 531 --GGYTDPLPKPGTKTKDGPAYTGKQLFSLFLPKDFNY 566
[39][TOP]
>UniRef100_B1L739 DNA-directed RNA polymerase n=1 Tax=Candidatus Korarchaeum
cryptofilum OPF8 RepID=B1L739_KORCO
Length = 1324
Score = 104 bits (259), Expect = 6e-21
Identities = 57/158 (36%), Positives = 92/158 (58%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R L DGD V+ NR PS+H+ SM+ V+VLP + ++P C P DFDGD ++ ++P
Sbjct: 432 RHLMDGDYVIFNRQPSLHKLSMLGHRVKVLP-GATFRLHPAVCVPYNADFDGDEMNLHVP 490
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQML 366
Q + VE+ EL+ + +++ ++G +++ QD +TA YM+ + L + E ++
Sbjct: 491 QILDGSVEVRELMGVKYNMLSPRTGGSIIGARQDFITALYMITKKDALFDKNEATRILSR 550
Query: 367 CDKKLTPPPSIIKAPSRNNSLWSGKQLFSMLLPSNFDY 480
P P+ IK P R LW+GKQL SMLLP + ++
Sbjct: 551 AGITQLPEPA-IKRPKR---LWTGKQLISMLLPKDLNF 584
[40][TOP]
>UniRef100_UPI00017B0A92 UPI00017B0A92 related cluster n=1 Tax=Tetraodon nigroviridis
RepID=UPI00017B0A92
Length = 1714
Score = 103 bits (256), Expect = 1e-20
Identities = 58/160 (36%), Positives = 95/160 (59%), Gaps = 3/160 (1%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R + DGD V+ NR P++H+ SM+ VR+LP S+ +N +P DFDGD ++ ++P
Sbjct: 426 RHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTF-RLNLSVTTPYNADFDGDEMNLHLP 484
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQML 366
QS+ R E+ EL + R ++ QS R ++ + QD+LTA + V L+ E+ L M
Sbjct: 485 QSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLDRGEVMNLLMF 544
Query: 367 C---DKKLTPPPSIIKAPSRNNSLWSGKQLFSMLLPSNFD 477
D K+ P P+I+K +LW+GKQ+FS+++P + +
Sbjct: 545 LSTWDGKM-PQPAILKP----RALWTGKQIFSLIIPGHIN 579
[41][TOP]
>UniRef100_UPI00016E658E UPI00016E658E related cluster n=1 Tax=Takifugu rubripes
RepID=UPI00016E658E
Length = 1628
Score = 103 bits (256), Expect = 1e-20
Identities = 58/160 (36%), Positives = 95/160 (59%), Gaps = 3/160 (1%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R + DGD V+ NR P++H+ SM+ VR+LP S+ +N +P DFDGD ++ ++P
Sbjct: 446 RHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTF-RLNLSVTTPYNADFDGDEMNLHLP 504
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQML 366
QS+ R E+ EL + R ++ QS R ++ + QD+LTA + V L+ E+ L M
Sbjct: 505 QSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLDRGEVMNLLMF 564
Query: 367 C---DKKLTPPPSIIKAPSRNNSLWSGKQLFSMLLPSNFD 477
D K+ P P+I+K +LW+GKQ+FS+++P + +
Sbjct: 565 LSTWDGKM-PQPAILKP----RALWTGKQIFSLIIPGHIN 599
[42][TOP]
>UniRef100_B9F2S6 DNA-directed RNA polymerase n=1 Tax=Oryza sativa Japonica Group
RepID=B9F2S6_ORYSJ
Length = 2017
Score = 103 bits (256), Expect = 1e-20
Identities = 63/153 (41%), Positives = 85/153 (55%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R + DGD V +NRPPS H+HS+ + V V V INPL C+P DFDGDC+H Y P
Sbjct: 408 RRIVDGDVVFLNRPPSTHKHSLQAFRVYVHE-DHTVKINPLICAPFAADFDGDCVHIYYP 466
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQML 366
QS+AA+ E EL ++++QL + SG+ L L DSL A M +L+ QL ML
Sbjct: 467 QSLAAKAEALELFSVEKQLTSSHSGKVNLQLVSDSL-LALKHMSSRTMLSKEAANQLAML 525
Query: 367 CDKKLTPPPSIIKAPSRNNSLWSGKQLFSMLLP 465
L P P++IK + W+ Q+ LP
Sbjct: 526 VTCSL-PDPAVIK----SKPYWTISQIVQGALP 553
[43][TOP]
>UniRef100_B8AHU1 DNA-directed RNA polymerase n=1 Tax=Oryza sativa Indica Group
RepID=B8AHU1_ORYSI
Length = 1867
Score = 103 bits (256), Expect = 1e-20
Identities = 63/153 (41%), Positives = 85/153 (55%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R + DGD V +NRPPS H+HS+ + V V V INPL C+P DFDGDC+H Y P
Sbjct: 408 RRIVDGDVVFLNRPPSTHKHSLQAFRVYVHE-DHTVKINPLICAPFAADFDGDCVHIYYP 466
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQML 366
QS+AA+ E EL ++++QL + SG+ L L DSL A M +L+ QL ML
Sbjct: 467 QSLAAKAEALELFSVEKQLTSSHSGKVNLQLVSDSL-LALKHMSSRTMLSKEAANQLAML 525
Query: 367 CDKKLTPPPSIIKAPSRNNSLWSGKQLFSMLLP 465
L P P++IK + W+ Q+ LP
Sbjct: 526 VTCSL-PDPAVIK----SKPYWTISQIVQGALP 553
[44][TOP]
>UniRef100_Q9NJJ7 DNA-directed RNA polymerase (Fragment) n=1 Tax=Scolopendra
polymorpha RepID=Q9NJJ7_SCOPO
Length = 734
Score = 103 bits (256), Expect = 1e-20
Identities = 60/156 (38%), Positives = 94/156 (60%), Gaps = 3/156 (1%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R + DGD V+ NR P++H+ SM+ +RVLP S+ +N +P DFDGD ++ ++P
Sbjct: 99 RHVRDGDVVIFNRQPTLHKMSMMGHHIRVLPWSTF-RMNLSVTTPYNADFDGDEMNLHVP 157
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQM- 363
QS+ R E+ EL + RQ+I QS R ++ + QD+LTA + + V L ++ L M
Sbjct: 158 QSMETRAEIEELAIVPRQIITPQSNRPVMGIVQDTLTAVRKMTKRDVFLEKDQMMNLLMF 217
Query: 364 --LCDKKLTPPPSIIKAPSRNNSLWSGKQLFSMLLP 465
+ D K+ P P+I+K LW+GKQLFS+++P
Sbjct: 218 LPIWDGKM-PMPAILKP----KPLWTGKQLFSLIIP 248
[45][TOP]
>UniRef100_O00820 DNA-directed RNA polymerase (Fragment) n=1 Tax=Acanthamoeba
castellanii RepID=O00820_ACACA
Length = 1569
Score = 103 bits (256), Expect = 1e-20
Identities = 58/186 (31%), Positives = 101/186 (54%), Gaps = 12/186 (6%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R + DGD ++ NR PS+H+ SM+ V+++P S+ +N +P DFDGD ++ ++P
Sbjct: 363 RHIQDGDVIIFNRQPSLHKMSMMGHKVKIMPYSTF-RLNLSVTTPYNADFDGDEMNMHVP 421
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQML 366
Q+ AR E+ EL+ + +Q++ QS + ++ + QD+L +L + + + + M
Sbjct: 422 QTPGARAEVIELMMVPKQIVTAQSNKPVIGIVQDTLLGGCLLTQRDTFIEKDVMMNILMW 481
Query: 367 CDK--KLTPPPSIIKAPSRNNSLWSGKQLFSMLLPSNF----------DYSFPPNGVSVS 510
+ P P+I+K LW+GKQ+FS+++P N D SF N V +
Sbjct: 482 LESWDGTVPTPTILKP----KQLWTGKQVFSLIIPRNTNFVNADDEEPDMSFTDNKVLIE 537
Query: 511 DGELTS 528
+GEL S
Sbjct: 538 EGELVS 543
[46][TOP]
>UniRef100_UPI000186D846 predicted protein n=1 Tax=Pediculus humanus corporis
RepID=UPI000186D846
Length = 1885
Score = 102 bits (255), Expect = 2e-20
Identities = 58/158 (36%), Positives = 94/158 (59%), Gaps = 3/158 (1%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R + DGD V+ NR P++H+ SM+ V+VLP S+ +N C SP DFDGD ++ ++P
Sbjct: 442 RHIRDGDLVIFNRQPTLHKMSMMGHRVKVLPWSTF-RMNLSCTSPYNADFDGDEMNLHVP 500
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQM- 363
QS+ R E+ L RQ+I Q+ + ++ + QD+LTA + + V L ++ + M
Sbjct: 501 QSMETRAEVENLHVTPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFLEKEQMMNILMF 560
Query: 364 --LCDKKLTPPPSIIKAPSRNNSLWSGKQLFSMLLPSN 471
+ D K+ P P+I+K LW+GKQ+FS+++P N
Sbjct: 561 LPIWDGKM-PQPAILKP----KPLWTGKQVFSLIIPGN 593
[47][TOP]
>UniRef100_Q9BNQ2 DNA-directed RNA polymerase (Fragment) n=1 Tax=Abacion magnum
RepID=Q9BNQ2_9MYRI
Length = 624
Score = 102 bits (255), Expect = 2e-20
Identities = 59/158 (37%), Positives = 93/158 (58%), Gaps = 3/158 (1%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R + DGD V+ NR P++H+ SM+ +RV P S+ +N +P DFDGD ++ ++P
Sbjct: 87 RHVRDGDVVIFNRQPTLHKMSMMGHHIRVFPWSTF-RMNLSVTTPYNADFDGDEMNLHVP 145
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQM- 363
QS+ R E+ EL + RQ+I QS R ++ + QD+LTA + + V + + L M
Sbjct: 146 QSMETRAEIEELAIVPRQIITPQSNRPVMGIVQDTLTAVRKMTKRDVFIEKEHMMNLLMF 205
Query: 364 --LCDKKLTPPPSIIKAPSRNNSLWSGKQLFSMLLPSN 471
+ D K+ P P+I+K LW+GKQLFS+++P N
Sbjct: 206 LPIWDGKV-PQPAILKP----KPLWTGKQLFSLIIPGN 238
[48][TOP]
>UniRef100_UPI000179338A PREDICTED: similar to DNA-directed RNA polymerase II subunit RPB1
(RNA polymerase II subunit B1) (DNA-directed RNA
polymerase III largest subunit) n=1 Tax=Acyrthosiphon
pisum RepID=UPI000179338A
Length = 1862
Score = 102 bits (254), Expect = 2e-20
Identities = 59/158 (37%), Positives = 93/158 (58%), Gaps = 3/158 (1%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R + DGD V+ NR P++H+ SM+ VRVLP S+ +N C SP DFDGD ++ ++P
Sbjct: 441 RHIKDGDLVVFNRQPTLHKMSMMGHRVRVLPWSTF-RMNLSCTSPYNADFDGDEMNLHVP 499
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQM- 363
QS+ R E+ + RQ+I Q+ + ++ + QD+LTA + + V L ++ L M
Sbjct: 500 QSMETRAEVENIHITPRQIITPQANKPVMGIVQDTLTAIRKMTKRDVFLEKEQMMNLLMH 559
Query: 364 --LCDKKLTPPPSIIKAPSRNNSLWSGKQLFSMLLPSN 471
+ D K+ P P I+K +W+GKQLFS+++P N
Sbjct: 560 LPIWDGKM-PTPCILKP----KPMWTGKQLFSLIIPGN 592
[49][TOP]
>UniRef100_O02452 DNA-directed RNA polymerase (Fragment) n=1 Tax=Mastigoproctus
giganteus RepID=O02452_MASGI
Length = 887
Score = 102 bits (254), Expect = 2e-20
Identities = 58/158 (36%), Positives = 95/158 (60%), Gaps = 3/158 (1%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R + +GD V+ NR P++H+ SM+ +RVLP S+ +N +P DFDGD ++ ++P
Sbjct: 87 RHVKNGDVVIFNRQPTLHKMSMMGHKIRVLPWSTF-RLNLSVTTPYNADFDGDEMNLHVP 145
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQM- 363
QS+ R E+ EL + RQ+I QS + ++ + QD+LTA + + V L ++ L M
Sbjct: 146 QSLETRAEVQELALVPRQIITPQSNKPVMGIVQDTLTAVRKMTKRDVFLEKDQMMNLLMF 205
Query: 364 --LCDKKLTPPPSIIKAPSRNNSLWSGKQLFSMLLPSN 471
+ D K+ P P+++K LW+GKQLFS+++P N
Sbjct: 206 LPIWDGKM-PMPAVLKP----KPLWTGKQLFSLIIPDN 238
[50][TOP]
>UniRef100_Q8U0M4 DNA-directed RNA polymerase n=1 Tax=Pyrococcus furiosus
RepID=Q8U0M4_PYRFU
Length = 907
Score = 102 bits (254), Expect = 2e-20
Identities = 54/155 (34%), Positives = 86/155 (55%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R L DGD VL NR PS+H+ S+++ VRV+P + +N C P DFDGD ++ ++P
Sbjct: 411 RHLMDGDIVLFNRQPSLHRMSIMAHRVRVMPYRTF-RLNLAVCPPYNADFDGDEMNLHVP 469
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQML 366
Q+ A+ E L+ + +I+ + G ++ QD ++ Y+L +G E++Q+ M
Sbjct: 470 QTEEAQAEARILMEVQNHIISPRYGGPIIGGIQDHISGGYLLTREGAYFTRDEVEQMLMF 529
Query: 367 CDKKLTPPPSIIKAPSRNNSLWSGKQLFSMLLPSN 471
+T P K N LWSGK +FS+LLP +
Sbjct: 530 AGVDITELPEPDKYDENGNPLWSGKTIFSLLLPED 564
[51][TOP]
>UniRef100_UPI0000D5670C PREDICTED: similar to GA13798-PA n=1 Tax=Tribolium castaneum
RepID=UPI0000D5670C
Length = 2007
Score = 102 bits (253), Expect = 3e-20
Identities = 58/158 (36%), Positives = 94/158 (59%), Gaps = 3/158 (1%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R + DGD V+ NR P++H+ SM+ V+VLP S+ +N C SP DFDGD ++ ++P
Sbjct: 444 RHIRDGDLVIFNRQPTLHKMSMMGHRVKVLPWSTF-RMNLSCTSPYNADFDGDEMNLHVP 502
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQM- 363
QS+ R E+ L RQ+I Q+ + ++ + QD+LTA + + V + ++ L M
Sbjct: 503 QSMETRAEVENLHITPRQIITPQANKPVMGIVQDTLTAIRKMTKRDVFIEKEQMMNLLMF 562
Query: 364 --LCDKKLTPPPSIIKAPSRNNSLWSGKQLFSMLLPSN 471
+ D K+ P P+I+K LW+GKQ+FS+++P N
Sbjct: 563 LPIWDGKM-PRPAILKP----KPLWTGKQIFSLIIPGN 595
[52][TOP]
>UniRef100_UPI0001796DD3 PREDICTED: similar to DNA-directed RNA polymerase II subunit RPB1
(RNA polymerase II subunit B1) (DNA-directed RNA
polymerase II subunit A) (DNA-directed RNA polymerase
III largest subunit) n=1 Tax=Equus caballus
RepID=UPI0001796DD3
Length = 1834
Score = 101 bits (252), Expect = 4e-20
Identities = 58/160 (36%), Positives = 93/160 (58%), Gaps = 3/160 (1%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R + DGD V+ NR P++H+ SM+ VR+LP S+ +N +P DFDGD ++ ++P
Sbjct: 448 RHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTF-RLNLSVTTPYNADFDGDEMNLHLP 506
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQML 366
QS+ R E+ EL + R ++ QS R ++ + QD+LTA + V L E+ L M
Sbjct: 507 QSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMF 566
Query: 367 C---DKKLTPPPSIIKAPSRNNSLWSGKQLFSMLLPSNFD 477
D K+ P P+I+K LW+GKQ+FS+++P + +
Sbjct: 567 LSTWDGKV-PQPAILKP----RPLWTGKQIFSLIIPGHIN 601
[53][TOP]
>UniRef100_UPI0000EBDCD2 PREDICTED: polymerase (RNA) II (DNA directed) polypeptide A, 220kDa
isoform 4 n=1 Tax=Bos taurus RepID=UPI0000EBDCD2
Length = 1970
Score = 101 bits (252), Expect = 4e-20
Identities = 58/160 (36%), Positives = 93/160 (58%), Gaps = 3/160 (1%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R + DGD V+ NR P++H+ SM+ VR+LP S+ +N +P DFDGD ++ ++P
Sbjct: 448 RHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTF-RLNLSVTTPYNADFDGDEMNLHLP 506
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQML 366
QS+ R E+ EL + R ++ QS R ++ + QD+LTA + V L E+ L M
Sbjct: 507 QSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMF 566
Query: 367 C---DKKLTPPPSIIKAPSRNNSLWSGKQLFSMLLPSNFD 477
D K+ P P+I+K LW+GKQ+FS+++P + +
Sbjct: 567 LSTWDGKV-PQPAILKP----RPLWTGKQIFSLIIPGHIN 601
[54][TOP]
>UniRef100_UPI0000E24648 PREDICTED: similar to DNA-directed RNA polymerase II largest
subunit (RPB1) n=1 Tax=Pan troglodytes
RepID=UPI0000E24648
Length = 1913
Score = 101 bits (252), Expect = 4e-20
Identities = 58/160 (36%), Positives = 93/160 (58%), Gaps = 3/160 (1%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R + DGD V+ NR P++H+ SM+ VR+LP S+ +N +P DFDGD ++ ++P
Sbjct: 448 RHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTF-RLNLSVTTPYNADFDGDEMNLHLP 506
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQML 366
QS+ R E+ EL + R ++ QS R ++ + QD+LTA + V L E+ L M
Sbjct: 507 QSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMF 566
Query: 367 C---DKKLTPPPSIIKAPSRNNSLWSGKQLFSMLLPSNFD 477
D K+ P P+I+K LW+GKQ+FS+++P + +
Sbjct: 567 LSTWDGKV-PQPAILKP----RPLWTGKQIFSLIIPGHIN 601
[55][TOP]
>UniRef100_UPI0000D9E16B PREDICTED: similar to DNA-directed RNA polymerase II largest
subunit (RPB1) n=1 Tax=Macaca mulatta
RepID=UPI0000D9E16B
Length = 1193
Score = 101 bits (252), Expect = 4e-20
Identities = 58/160 (36%), Positives = 93/160 (58%), Gaps = 3/160 (1%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R + DGD V+ NR P++H+ SM+ VR+LP S+ +N +P DFDGD ++ ++P
Sbjct: 448 RHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTF-RLNLSVTTPYNADFDGDEMNLHLP 506
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQML 366
QS+ R E+ EL + R ++ QS R ++ + QD+LTA + V L E+ L M
Sbjct: 507 QSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMF 566
Query: 367 C---DKKLTPPPSIIKAPSRNNSLWSGKQLFSMLLPSNFD 477
D K+ P P+I+K LW+GKQ+FS+++P + +
Sbjct: 567 LSTWDGKV-PQPAILKP----RPLWTGKQIFSLIIPGHIN 601
[56][TOP]
>UniRef100_UPI00005A0B2C PREDICTED: similar to DNA-directed RNA polymerase II largest
subunit (RPB1) isoform 23 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B2C
Length = 1888
Score = 101 bits (252), Expect = 4e-20
Identities = 58/160 (36%), Positives = 93/160 (58%), Gaps = 3/160 (1%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R + DGD V+ NR P++H+ SM+ VR+LP S+ +N +P DFDGD ++ ++P
Sbjct: 448 RHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTF-RLNLSVTTPYNADFDGDEMNLHLP 506
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQML 366
QS+ R E+ EL + R ++ QS R ++ + QD+LTA + V L E+ L M
Sbjct: 507 QSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMF 566
Query: 367 C---DKKLTPPPSIIKAPSRNNSLWSGKQLFSMLLPSNFD 477
D K+ P P+I+K LW+GKQ+FS+++P + +
Sbjct: 567 LSTWDGKV-PQPAILKP----RPLWTGKQIFSLIIPGHIN 601
[57][TOP]
>UniRef100_UPI00005A0B2B PREDICTED: similar to DNA-directed RNA polymerase II largest
subunit (RPB1) isoform 22 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B2B
Length = 1892
Score = 101 bits (252), Expect = 4e-20
Identities = 58/160 (36%), Positives = 93/160 (58%), Gaps = 3/160 (1%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R + DGD V+ NR P++H+ SM+ VR+LP S+ +N +P DFDGD ++ ++P
Sbjct: 450 RHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTF-RLNLSVTTPYNADFDGDEMNLHLP 508
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQML 366
QS+ R E+ EL + R ++ QS R ++ + QD+LTA + V L E+ L M
Sbjct: 509 QSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMF 568
Query: 367 C---DKKLTPPPSIIKAPSRNNSLWSGKQLFSMLLPSNFD 477
D K+ P P+I+K LW+GKQ+FS+++P + +
Sbjct: 569 LSTWDGKV-PQPAILKP----RPLWTGKQIFSLIIPGHIN 603
[58][TOP]
>UniRef100_UPI00005A0B2A PREDICTED: similar to DNA-directed RNA polymerase II largest
subunit (RPB1) isoform 21 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B2A
Length = 1896
Score = 101 bits (252), Expect = 4e-20
Identities = 58/160 (36%), Positives = 93/160 (58%), Gaps = 3/160 (1%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R + DGD V+ NR P++H+ SM+ VR+LP S+ +N +P DFDGD ++ ++P
Sbjct: 450 RHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTF-RLNLSVTTPYNADFDGDEMNLHLP 508
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQML 366
QS+ R E+ EL + R ++ QS R ++ + QD+LTA + V L E+ L M
Sbjct: 509 QSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMF 568
Query: 367 C---DKKLTPPPSIIKAPSRNNSLWSGKQLFSMLLPSNFD 477
D K+ P P+I+K LW+GKQ+FS+++P + +
Sbjct: 569 LSTWDGKV-PQPAILKP----RPLWTGKQIFSLIIPGHIN 603
[59][TOP]
>UniRef100_UPI00005A0B29 PREDICTED: similar to DNA-directed RNA polymerase II largest
subunit (RPB1) isoform 20 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B29
Length = 1891
Score = 101 bits (252), Expect = 4e-20
Identities = 58/160 (36%), Positives = 93/160 (58%), Gaps = 3/160 (1%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R + DGD V+ NR P++H+ SM+ VR+LP S+ +N +P DFDGD ++ ++P
Sbjct: 417 RHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTF-RLNLSVTTPYNADFDGDEMNLHLP 475
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQML 366
QS+ R E+ EL + R ++ QS R ++ + QD+LTA + V L E+ L M
Sbjct: 476 QSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMF 535
Query: 367 C---DKKLTPPPSIIKAPSRNNSLWSGKQLFSMLLPSNFD 477
D K+ P P+I+K LW+GKQ+FS+++P + +
Sbjct: 536 LSTWDGKV-PQPAILKP----RPLWTGKQIFSLIIPGHIN 570
[60][TOP]
>UniRef100_UPI00005A0B28 PREDICTED: similar to DNA-directed RNA polymerase II largest
subunit (RPB1) isoform 19 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B28
Length = 1908
Score = 101 bits (252), Expect = 4e-20
Identities = 58/160 (36%), Positives = 93/160 (58%), Gaps = 3/160 (1%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R + DGD V+ NR P++H+ SM+ VR+LP S+ +N +P DFDGD ++ ++P
Sbjct: 434 RHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTF-RLNLSVTTPYNADFDGDEMNLHLP 492
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQML 366
QS+ R E+ EL + R ++ QS R ++ + QD+LTA + V L E+ L M
Sbjct: 493 QSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMF 552
Query: 367 C---DKKLTPPPSIIKAPSRNNSLWSGKQLFSMLLPSNFD 477
D K+ P P+I+K LW+GKQ+FS+++P + +
Sbjct: 553 LSTWDGKV-PQPAILKP----RPLWTGKQIFSLIIPGHIN 587
[61][TOP]
>UniRef100_UPI00005A0B27 PREDICTED: similar to polymerase (RNA) II (DNA directed)
polypeptide A isoform 18 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B27
Length = 1831
Score = 101 bits (252), Expect = 4e-20
Identities = 58/160 (36%), Positives = 93/160 (58%), Gaps = 3/160 (1%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R + DGD V+ NR P++H+ SM+ VR+LP S+ +N +P DFDGD ++ ++P
Sbjct: 448 RHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTF-RLNLSVTTPYNADFDGDEMNLHLP 506
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQML 366
QS+ R E+ EL + R ++ QS R ++ + QD+LTA + V L E+ L M
Sbjct: 507 QSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMF 566
Query: 367 C---DKKLTPPPSIIKAPSRNNSLWSGKQLFSMLLPSNFD 477
D K+ P P+I+K LW+GKQ+FS+++P + +
Sbjct: 567 LSTWDGKV-PQPAILKP----RPLWTGKQIFSLIIPGHIN 601
[62][TOP]
>UniRef100_UPI00005A0B26 PREDICTED: similar to polymerase (RNA) II (DNA directed)
polypeptide A isoform 17 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B26
Length = 1684
Score = 101 bits (252), Expect = 4e-20
Identities = 58/160 (36%), Positives = 93/160 (58%), Gaps = 3/160 (1%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R + DGD V+ NR P++H+ SM+ VR+LP S+ +N +P DFDGD ++ ++P
Sbjct: 438 RHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTF-RLNLSVTTPYNADFDGDEMNLHLP 496
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQML 366
QS+ R E+ EL + R ++ QS R ++ + QD+LTA + V L E+ L M
Sbjct: 497 QSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMF 556
Query: 367 C---DKKLTPPPSIIKAPSRNNSLWSGKQLFSMLLPSNFD 477
D K+ P P+I+K LW+GKQ+FS+++P + +
Sbjct: 557 LSTWDGKV-PQPAILKP----RPLWTGKQIFSLIIPGHIN 591
[63][TOP]
>UniRef100_UPI00005A0B25 PREDICTED: similar to polymerase (RNA) II (DNA directed)
polypeptide A isoform 16 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B25
Length = 1752
Score = 101 bits (252), Expect = 4e-20
Identities = 58/160 (36%), Positives = 93/160 (58%), Gaps = 3/160 (1%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R + DGD V+ NR P++H+ SM+ VR+LP S+ +N +P DFDGD ++ ++P
Sbjct: 438 RHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTF-RLNLSVTTPYNADFDGDEMNLHLP 496
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQML 366
QS+ R E+ EL + R ++ QS R ++ + QD+LTA + V L E+ L M
Sbjct: 497 QSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMF 556
Query: 367 C---DKKLTPPPSIIKAPSRNNSLWSGKQLFSMLLPSNFD 477
D K+ P P+I+K LW+GKQ+FS+++P + +
Sbjct: 557 LSTWDGKV-PQPAILKP----RPLWTGKQIFSLIIPGHIN 591
[64][TOP]
>UniRef100_UPI00005A0B24 PREDICTED: similar to DNA-directed RNA polymerase II largest
subunit (RPB1) isoform 15 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B24
Length = 1924
Score = 101 bits (252), Expect = 4e-20
Identities = 58/160 (36%), Positives = 93/160 (58%), Gaps = 3/160 (1%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R + DGD V+ NR P++H+ SM+ VR+LP S+ +N +P DFDGD ++ ++P
Sbjct: 450 RHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTF-RLNLSVTTPYNADFDGDEMNLHLP 508
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQML 366
QS+ R E+ EL + R ++ QS R ++ + QD+LTA + V L E+ L M
Sbjct: 509 QSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMF 568
Query: 367 C---DKKLTPPPSIIKAPSRNNSLWSGKQLFSMLLPSNFD 477
D K+ P P+I+K LW+GKQ+FS+++P + +
Sbjct: 569 LSTWDGKV-PQPAILKP----RPLWTGKQIFSLIIPGHIN 603
[65][TOP]
>UniRef100_UPI00005A0B23 PREDICTED: similar to polymerase (RNA) II (DNA directed)
polypeptide A isoform 14 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B23
Length = 1653
Score = 101 bits (252), Expect = 4e-20
Identities = 58/160 (36%), Positives = 93/160 (58%), Gaps = 3/160 (1%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R + DGD V+ NR P++H+ SM+ VR+LP S+ +N +P DFDGD ++ ++P
Sbjct: 421 RHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTF-RLNLSVTTPYNADFDGDEMNLHLP 479
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQML 366
QS+ R E+ EL + R ++ QS R ++ + QD+LTA + V L E+ L M
Sbjct: 480 QSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMF 539
Query: 367 C---DKKLTPPPSIIKAPSRNNSLWSGKQLFSMLLPSNFD 477
D K+ P P+I+K LW+GKQ+FS+++P + +
Sbjct: 540 LSTWDGKV-PQPAILKP----RPLWTGKQIFSLIIPGHIN 574
[66][TOP]
>UniRef100_UPI00005A0B22 PREDICTED: similar to polymerase (RNA) II (DNA directed)
polypeptide A isoform 13 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B22
Length = 1722
Score = 101 bits (252), Expect = 4e-20
Identities = 58/160 (36%), Positives = 93/160 (58%), Gaps = 3/160 (1%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R + DGD V+ NR P++H+ SM+ VR+LP S+ +N +P DFDGD ++ ++P
Sbjct: 421 RHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTF-RLNLSVTTPYNADFDGDEMNLHLP 479
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQML 366
QS+ R E+ EL + R ++ QS R ++ + QD+LTA + V L E+ L M
Sbjct: 480 QSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMF 539
Query: 367 C---DKKLTPPPSIIKAPSRNNSLWSGKQLFSMLLPSNFD 477
D K+ P P+I+K LW+GKQ+FS+++P + +
Sbjct: 540 LSTWDGKV-PQPAILKP----RPLWTGKQIFSLIIPGHIN 574
[67][TOP]
>UniRef100_UPI00005A0B21 PREDICTED: similar to DNA-directed RNA polymerase II largest
subunit (RPB1) isoform 12 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B21
Length = 1922
Score = 101 bits (252), Expect = 4e-20
Identities = 58/160 (36%), Positives = 93/160 (58%), Gaps = 3/160 (1%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R + DGD V+ NR P++H+ SM+ VR+LP S+ +N +P DFDGD ++ ++P
Sbjct: 448 RHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTF-RLNLSVTTPYNADFDGDEMNLHLP 506
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQML 366
QS+ R E+ EL + R ++ QS R ++ + QD+LTA + V L E+ L M
Sbjct: 507 QSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMF 566
Query: 367 C---DKKLTPPPSIIKAPSRNNSLWSGKQLFSMLLPSNFD 477
D K+ P P+I+K LW+GKQ+FS+++P + +
Sbjct: 567 LSTWDGKV-PQPAILKP----RPLWTGKQIFSLIIPGHIN 601
[68][TOP]
>UniRef100_UPI00005A0B20 PREDICTED: similar to DNA-directed RNA polymerase II largest
subunit (RPB1) isoform 11 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B20
Length = 1923
Score = 101 bits (252), Expect = 4e-20
Identities = 58/160 (36%), Positives = 93/160 (58%), Gaps = 3/160 (1%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R + DGD V+ NR P++H+ SM+ VR+LP S+ +N +P DFDGD ++ ++P
Sbjct: 449 RHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTF-RLNLSVTTPYNADFDGDEMNLHLP 507
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQML 366
QS+ R E+ EL + R ++ QS R ++ + QD+LTA + V L E+ L M
Sbjct: 508 QSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMF 567
Query: 367 C---DKKLTPPPSIIKAPSRNNSLWSGKQLFSMLLPSNFD 477
D K+ P P+I+K LW+GKQ+FS+++P + +
Sbjct: 568 LSTWDGKV-PQPAILKP----RPLWTGKQIFSLIIPGHIN 602
[69][TOP]
>UniRef100_UPI00005A0B1D PREDICTED: similar to DNA-directed RNA polymerase II largest
subunit (RPB1) isoform 1 n=2 Tax=Canis lupus familiaris
RepID=UPI00005A0B1D
Length = 1764
Score = 101 bits (252), Expect = 4e-20
Identities = 58/160 (36%), Positives = 93/160 (58%), Gaps = 3/160 (1%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R + DGD V+ NR P++H+ SM+ VR+LP S+ +N +P DFDGD ++ ++P
Sbjct: 448 RHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTF-RLNLSVTTPYNADFDGDEMNLHLP 506
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQML 366
QS+ R E+ EL + R ++ QS R ++ + QD+LTA + V L E+ L M
Sbjct: 507 QSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMF 566
Query: 367 C---DKKLTPPPSIIKAPSRNNSLWSGKQLFSMLLPSNFD 477
D K+ P P+I+K LW+GKQ+FS+++P + +
Sbjct: 567 LSTWDGKV-PQPAILKP----RPLWTGKQIFSLIIPGHIN 601
[70][TOP]
>UniRef100_UPI00005A0B1C PREDICTED: similar to polymerase (RNA) II (DNA directed)
polypeptide A isoform 8 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B1C
Length = 1719
Score = 101 bits (252), Expect = 4e-20
Identities = 58/160 (36%), Positives = 93/160 (58%), Gaps = 3/160 (1%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R + DGD V+ NR P++H+ SM+ VR+LP S+ +N +P DFDGD ++ ++P
Sbjct: 448 RHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTF-RLNLSVTTPYNADFDGDEMNLHLP 506
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQML 366
QS+ R E+ EL + R ++ QS R ++ + QD+LTA + V L E+ L M
Sbjct: 507 QSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMF 566
Query: 367 C---DKKLTPPPSIIKAPSRNNSLWSGKQLFSMLLPSNFD 477
D K+ P P+I+K LW+GKQ+FS+++P + +
Sbjct: 567 LSTWDGKV-PQPAILKP----RPLWTGKQIFSLIIPGHIN 601
[71][TOP]
>UniRef100_UPI00005A0B1B PREDICTED: similar to polymerase (RNA) II (DNA directed)
polypeptide A isoform 7 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B1B
Length = 1858
Score = 101 bits (252), Expect = 4e-20
Identities = 58/160 (36%), Positives = 93/160 (58%), Gaps = 3/160 (1%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R + DGD V+ NR P++H+ SM+ VR+LP S+ +N +P DFDGD ++ ++P
Sbjct: 448 RHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTF-RLNLSVTTPYNADFDGDEMNLHLP 506
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQML 366
QS+ R E+ EL + R ++ QS R ++ + QD+LTA + V L E+ L M
Sbjct: 507 QSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMF 566
Query: 367 C---DKKLTPPPSIIKAPSRNNSLWSGKQLFSMLLPSNFD 477
D K+ P P+I+K LW+GKQ+FS+++P + +
Sbjct: 567 LSTWDGKV-PQPAILKP----RPLWTGKQIFSLIIPGHIN 601
[72][TOP]
>UniRef100_UPI00005A0B1A PREDICTED: similar to DNA-directed RNA polymerase II largest
subunit (RPB1) isoform 6 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B1A
Length = 1767
Score = 101 bits (252), Expect = 4e-20
Identities = 58/160 (36%), Positives = 93/160 (58%), Gaps = 3/160 (1%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R + DGD V+ NR P++H+ SM+ VR+LP S+ +N +P DFDGD ++ ++P
Sbjct: 434 RHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTF-RLNLSVTTPYNADFDGDEMNLHLP 492
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQML 366
QS+ R E+ EL + R ++ QS R ++ + QD+LTA + V L E+ L M
Sbjct: 493 QSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMF 552
Query: 367 C---DKKLTPPPSIIKAPSRNNSLWSGKQLFSMLLPSNFD 477
D K+ P P+I+K LW+GKQ+FS+++P + +
Sbjct: 553 LSTWDGKV-PQPAILKP----RPLWTGKQIFSLIIPGHIN 587
[73][TOP]
>UniRef100_UPI00005A0B17 PREDICTED: similar to DNA-directed RNA polymerase II largest
subunit (RPB1) isoform 3 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B17
Length = 1788
Score = 101 bits (252), Expect = 4e-20
Identities = 58/160 (36%), Positives = 93/160 (58%), Gaps = 3/160 (1%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R + DGD V+ NR P++H+ SM+ VR+LP S+ +N +P DFDGD ++ ++P
Sbjct: 448 RHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTF-RLNLSVTTPYNADFDGDEMNLHLP 506
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQML 366
QS+ R E+ EL + R ++ QS R ++ + QD+LTA + V L E+ L M
Sbjct: 507 QSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMF 566
Query: 367 C---DKKLTPPPSIIKAPSRNNSLWSGKQLFSMLLPSNFD 477
D K+ P P+I+K LW+GKQ+FS+++P + +
Sbjct: 567 LSTWDGKV-PQPAILKP----RPLWTGKQIFSLIIPGHIN 601
[74][TOP]
>UniRef100_UPI00005A0B16 PREDICTED: similar to DNA-directed RNA polymerase II largest
subunit (RPB1) isoform 2 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B16
Length = 1922
Score = 101 bits (252), Expect = 4e-20
Identities = 58/160 (36%), Positives = 93/160 (58%), Gaps = 3/160 (1%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R + DGD V+ NR P++H+ SM+ VR+LP S+ +N +P DFDGD ++ ++P
Sbjct: 448 RHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTF-RLNLSVTTPYNADFDGDEMNLHLP 506
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQML 366
QS+ R E+ EL + R ++ QS R ++ + QD+LTA + V L E+ L M
Sbjct: 507 QSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMF 566
Query: 367 C---DKKLTPPPSIIKAPSRNNSLWSGKQLFSMLLPSNFD 477
D K+ P P+I+K LW+GKQ+FS+++P + +
Sbjct: 567 LSTWDGKV-PQPAILKP----RPLWTGKQIFSLIIPGHIN 601
[75][TOP]
>UniRef100_UPI0001B7A25C UPI0001B7A25C related cluster n=1 Tax=Rattus norvegicus
RepID=UPI0001B7A25C
Length = 1968
Score = 101 bits (252), Expect = 4e-20
Identities = 58/160 (36%), Positives = 93/160 (58%), Gaps = 3/160 (1%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R + DGD V+ NR P++H+ SM+ VR+LP S+ +N +P DFDGD ++ ++P
Sbjct: 450 RHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTF-RLNLSVTTPYNADFDGDEMNLHLP 508
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQML 366
QS+ R E+ EL + R ++ QS R ++ + QD+LTA + V L E+ L M
Sbjct: 509 QSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMF 568
Query: 367 C---DKKLTPPPSIIKAPSRNNSLWSGKQLFSMLLPSNFD 477
D K+ P P+I+K LW+GKQ+FS+++P + +
Sbjct: 569 LSTWDGKV-PQPAILKP----RPLWTGKQIFSLIIPGHIN 603
[76][TOP]
>UniRef100_UPI0001B7A25B UPI0001B7A25B related cluster n=1 Tax=Rattus norvegicus
RepID=UPI0001B7A25B
Length = 1932
Score = 101 bits (252), Expect = 4e-20
Identities = 58/160 (36%), Positives = 93/160 (58%), Gaps = 3/160 (1%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R + DGD V+ NR P++H+ SM+ VR+LP S+ +N +P DFDGD ++ ++P
Sbjct: 448 RHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTF-RLNLSVTTPYNADFDGDEMNLHLP 506
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQML 366
QS+ R E+ EL + R ++ QS R ++ + QD+LTA + V L E+ L M
Sbjct: 507 QSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMF 566
Query: 367 C---DKKLTPPPSIIKAPSRNNSLWSGKQLFSMLLPSNFD 477
D K+ P P+I+K LW+GKQ+FS+++P + +
Sbjct: 567 LSTWDGKV-PQPAILKP----RPLWTGKQIFSLIIPGHIN 601
[77][TOP]
>UniRef100_UPI0000DA33D8 PREDICTED: similar to DNA-directed RNA polymerase II largest
subunit (RPB1) n=1 Tax=Rattus norvegicus
RepID=UPI0000DA33D8
Length = 1970
Score = 101 bits (252), Expect = 4e-20
Identities = 58/160 (36%), Positives = 93/160 (58%), Gaps = 3/160 (1%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R + DGD V+ NR P++H+ SM+ VR+LP S+ +N +P DFDGD ++ ++P
Sbjct: 448 RHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTF-RLNLSVTTPYNADFDGDEMNLHLP 506
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQML 366
QS+ R E+ EL + R ++ QS R ++ + QD+LTA + V L E+ L M
Sbjct: 507 QSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMF 566
Query: 367 C---DKKLTPPPSIIKAPSRNNSLWSGKQLFSMLLPSNFD 477
D K+ P P+I+K LW+GKQ+FS+++P + +
Sbjct: 567 LSTWDGKV-PQPAILKP----RPLWTGKQIFSLIIPGHIN 601
[78][TOP]
>UniRef100_UPI0001951285 220 kDa DNA-directed RNA polymerase polypeptide A n=1 Tax=Canis
lupus familiaris RepID=UPI0001951285
Length = 1969
Score = 101 bits (252), Expect = 4e-20
Identities = 58/160 (36%), Positives = 93/160 (58%), Gaps = 3/160 (1%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R + DGD V+ NR P++H+ SM+ VR+LP S+ +N +P DFDGD ++ ++P
Sbjct: 448 RHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTF-RLNLSVTTPYNADFDGDEMNLHLP 506
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQML 366
QS+ R E+ EL + R ++ QS R ++ + QD+LTA + V L E+ L M
Sbjct: 507 QSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMF 566
Query: 367 C---DKKLTPPPSIIKAPSRNNSLWSGKQLFSMLLPSNFD 477
D K+ P P+I+K LW+GKQ+FS+++P + +
Sbjct: 567 LSTWDGKV-PQPAILKP----RPLWTGKQIFSLIIPGHIN 601
[79][TOP]
>UniRef100_O35559 DNA-directed RNA polymerase n=1 Tax=Cricetulus griseus
RepID=O35559_CRIGR
Length = 1970
Score = 101 bits (252), Expect = 4e-20
Identities = 58/160 (36%), Positives = 93/160 (58%), Gaps = 3/160 (1%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R + DGD V+ NR P++H+ SM+ VR+LP S+ +N +P DFDGD ++ ++P
Sbjct: 448 RHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTF-RLNLSVTTPYNADFDGDEMNLHLP 506
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQML 366
QS+ R E+ EL + R ++ QS R ++ + QD+LTA + V L E+ L M
Sbjct: 507 QSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMF 566
Query: 367 C---DKKLTPPPSIIKAPSRNNSLWSGKQLFSMLLPSNFD 477
D K+ P P+I+K LW+GKQ+FS+++P + +
Sbjct: 567 LSTWDGKV-PQPAILKP----RPLWTGKQIFSLIIPGHIN 601
[80][TOP]
>UniRef100_O08847 DNA-directed RNA polymerase n=1 Tax=Mus musculus RepID=O08847_MOUSE
Length = 1966
Score = 101 bits (252), Expect = 4e-20
Identities = 58/160 (36%), Positives = 93/160 (58%), Gaps = 3/160 (1%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R + DGD V+ NR P++H+ SM+ VR+LP S+ +N +P DFDGD ++ ++P
Sbjct: 448 RHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTF-RLNLSVTTPYNADFDGDEMNLHLP 506
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQML 366
QS+ R E+ EL + R ++ QS R ++ + QD+LTA + V L E+ L M
Sbjct: 507 QSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMF 566
Query: 367 C---DKKLTPPPSIIKAPSRNNSLWSGKQLFSMLLPSNFD 477
D K+ P P+I+K LW+GKQ+FS+++P + +
Sbjct: 567 LSTWDGKV-PQPAILKP----RPLWTGKQIFSLIIPGHIN 601
[81][TOP]
>UniRef100_C5XUR7 DNA-directed RNA polymerase n=1 Tax=Sorghum bicolor
RepID=C5XUR7_SORBI
Length = 554
Score = 101 bits (252), Expect = 4e-20
Identities = 62/154 (40%), Positives = 81/154 (52%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R + DGD V +NRPPS H+HS+ + V V INPL C P DFDGDC+H Y P
Sbjct: 92 RRIVDGDVVFLNRPPSTHKHSLQAFYAYVHD-DHTVKINPLMCGPFSADFDGDCVHIYYP 150
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQML 366
QS+AA+ E EL +++RQLI+ SG+ L L D L A M D +L+ QL M
Sbjct: 151 QSLAAKAEALELFSVERQLISSHSGKVNLQLGNDCL-VAMKAMSDRTVLHKELANQLAMF 209
Query: 367 CDKKLTPPPSIIKAPSRNNSLWSGKQLFSMLLPS 468
L P + PS W+ Q+ LP+
Sbjct: 210 VPFSLLAPAVMKPIPS-----WTITQIVQGALPA 238
[82][TOP]
>UniRef100_Q9NJK2 DNA-directed RNA polymerase (Fragment) n=1 Tax=Polyxenus
fasciculatus RepID=Q9NJK2_9MYRI
Length = 751
Score = 101 bits (252), Expect = 4e-20
Identities = 57/158 (36%), Positives = 95/158 (60%), Gaps = 3/158 (1%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R + DGD V+ NR P++H+ SM+ +RV P S+ +N +P DFDGD ++ ++P
Sbjct: 99 RHVRDGDVVIFNRQPTLHKMSMMGHHIRVFPWSTF-RMNLSVTTPYNADFDGDEMNLHVP 157
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQM- 363
QS+ R E+ EL + RQ+I QS R ++ + QD+LTA + + V L+ ++ + M
Sbjct: 158 QSMETRAEIEELAIVPRQIITPQSNRPVMGIVQDTLTAVRKMTKRDVFLDKDQMMNILMF 217
Query: 364 --LCDKKLTPPPSIIKAPSRNNSLWSGKQLFSMLLPSN 471
+ D K+ P P+I+K +W+GKQ+FS+++P N
Sbjct: 218 LPIWDGKM-PQPAILKP----KPVWTGKQVFSLIIPGN 250
[83][TOP]
>UniRef100_A6NN93 DNA-directed RNA polymerase n=1 Tax=Homo sapiens RepID=A6NN93_HUMAN
Length = 1970
Score = 101 bits (252), Expect = 4e-20
Identities = 58/160 (36%), Positives = 93/160 (58%), Gaps = 3/160 (1%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R + DGD V+ NR P++H+ SM+ VR+LP S+ +N +P DFDGD ++ ++P
Sbjct: 448 RHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTF-RLNLSVTTPYNADFDGDEMNLHLP 506
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQML 366
QS+ R E+ EL + R ++ QS R ++ + QD+LTA + V L E+ L M
Sbjct: 507 QSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMF 566
Query: 367 C---DKKLTPPPSIIKAPSRNNSLWSGKQLFSMLLPSNFD 477
D K+ P P+I+K LW+GKQ+FS+++P + +
Sbjct: 567 LSTWDGKV-PQPAILKP----RPLWTGKQIFSLIIPGHIN 601
[84][TOP]
>UniRef100_C1GX38 DNA-directed RNA polymerase n=1 Tax=Paracoccidioides brasiliensis
Pb01 RepID=C1GX38_PARBA
Length = 1425
Score = 101 bits (252), Expect = 4e-20
Identities = 61/164 (37%), Positives = 91/164 (55%), Gaps = 7/164 (4%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R + DGD VL NR PS+H+ S++S V+V P +N C+P DFDGD ++ ++P
Sbjct: 434 RHIEDGDIVLFNRQPSLHKLSILSHFVKVRP-HRTFRLNECVCNPYNADFDGDEMNLHVP 492
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQML 366
Q+ AR E EL+ + L+ ++G ++S QD +TAAYML V Y+ + +
Sbjct: 493 QTEEARAEAMELMGVKNNLVTPKNGEPIISAIQDFITAAYMLSSKNV---FYDRKTFTQV 549
Query: 367 CDKKL-------TPPPSIIKAPSRNNSLWSGKQLFSMLLPSNFD 477
C L PPPSI+K LW+GKQ+F++L+ N D
Sbjct: 550 CLYMLLPGTRFDLPPPSILKP----QMLWTGKQVFNILMRPNKD 589
[85][TOP]
>UniRef100_P08775 DNA-directed RNA polymerase II subunit RPB1 n=1 Tax=Mus musculus
RepID=RPB1_MOUSE
Length = 1970
Score = 101 bits (252), Expect = 4e-20
Identities = 58/160 (36%), Positives = 93/160 (58%), Gaps = 3/160 (1%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R + DGD V+ NR P++H+ SM+ VR+LP S+ +N +P DFDGD ++ ++P
Sbjct: 448 RHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTF-RLNLSVTTPYNADFDGDEMNLHLP 506
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQML 366
QS+ R E+ EL + R ++ QS R ++ + QD+LTA + V L E+ L M
Sbjct: 507 QSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMF 566
Query: 367 C---DKKLTPPPSIIKAPSRNNSLWSGKQLFSMLLPSNFD 477
D K+ P P+I+K LW+GKQ+FS+++P + +
Sbjct: 567 LSTWDGKV-PQPAILKP----RPLWTGKQIFSLIIPGHIN 601
[86][TOP]
>UniRef100_P24928 DNA-directed RNA polymerase II subunit RPB1 n=2
Tax=Euarchontoglires RepID=RPB1_HUMAN
Length = 1970
Score = 101 bits (252), Expect = 4e-20
Identities = 58/160 (36%), Positives = 93/160 (58%), Gaps = 3/160 (1%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R + DGD V+ NR P++H+ SM+ VR+LP S+ +N +P DFDGD ++ ++P
Sbjct: 448 RHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTF-RLNLSVTTPYNADFDGDEMNLHLP 506
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQML 366
QS+ R E+ EL + R ++ QS R ++ + QD+LTA + V L E+ L M
Sbjct: 507 QSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMF 566
Query: 367 C---DKKLTPPPSIIKAPSRNNSLWSGKQLFSMLLPSNFD 477
D K+ P P+I+K LW+GKQ+FS+++P + +
Sbjct: 567 LSTWDGKV-PQPAILKP----RPLWTGKQIFSLIIPGHIN 601
[87][TOP]
>UniRef100_UPI0000F2BF13 PREDICTED: similar to RNA polymerase II isoform 2 n=1
Tax=Monodelphis domestica RepID=UPI0000F2BF13
Length = 1932
Score = 101 bits (251), Expect = 5e-20
Identities = 58/160 (36%), Positives = 93/160 (58%), Gaps = 3/160 (1%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R + DGD V+ NR P++H+ SM+ VR+LP S+ +N +P DFDGD ++ ++P
Sbjct: 448 RHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTF-RLNLSVTTPYNADFDGDEMNLHLP 506
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQML 366
QS+ R E+ EL + R ++ QS R ++ + QD+LTA + V L E+ L M
Sbjct: 507 QSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMF 566
Query: 367 C---DKKLTPPPSIIKAPSRNNSLWSGKQLFSMLLPSNFD 477
D K+ P P+I+K LW+GKQ+FS+++P + +
Sbjct: 567 LSTWDGKV-PQPAILKP----RPLWTGKQIFSLIVPGHIN 601
[88][TOP]
>UniRef100_UPI0000F2BF12 PREDICTED: similar to RNA polymerase II isoform 1 n=1
Tax=Monodelphis domestica RepID=UPI0000F2BF12
Length = 1970
Score = 101 bits (251), Expect = 5e-20
Identities = 58/160 (36%), Positives = 93/160 (58%), Gaps = 3/160 (1%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R + DGD V+ NR P++H+ SM+ VR+LP S+ +N +P DFDGD ++ ++P
Sbjct: 448 RHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTF-RLNLSVTTPYNADFDGDEMNLHLP 506
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQML 366
QS+ R E+ EL + R ++ QS R ++ + QD+LTA + V L E+ L M
Sbjct: 507 QSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMF 566
Query: 367 C---DKKLTPPPSIIKAPSRNNSLWSGKQLFSMLLPSNFD 477
D K+ P P+I+K LW+GKQ+FS+++P + +
Sbjct: 567 LSTWDGKV-PQPAILKP----RPLWTGKQIFSLIVPGHIN 601
[89][TOP]
>UniRef100_A7TNS6 DNA-directed RNA polymerase n=1 Tax=Vanderwaltozyma polyspora DSM
70294 RepID=A7TNS6_VANPO
Length = 1460
Score = 101 bits (251), Expect = 5e-20
Identities = 59/161 (36%), Positives = 91/161 (56%), Gaps = 4/161 (2%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R L DGD VL NR PS+H+ S++S ++ P + +N C+P DFDGD ++ ++P
Sbjct: 464 RHLEDGDIVLFNRQPSLHRLSILSHFAKIRPWRTF-RLNECVCTPYNADFDGDEMNLHVP 522
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQ-LQM 363
Q+ AR E L+ + L+ +SG +++ +QD +T +Y++ L+ Q L M
Sbjct: 523 QTEEARAEAMNLMGVKNNLLTPKSGEPIIAATQDFITGSYLISHKDTFLDRATFTQLLSM 582
Query: 364 LCDKKL---TPPPSIIKAPSRNNSLWSGKQLFSMLLPSNFD 477
+ D L PPP+IIK LW+GKQLFS+L+ N D
Sbjct: 583 MSDSNLQFDIPPPTIIKP----YCLWTGKQLFSLLIKPNKD 619
[90][TOP]
>UniRef100_UPI0000546D90 PREDICTED: im:7136071 isoform 1 n=1 Tax=Danio rerio
RepID=UPI0000546D90
Length = 1972
Score = 100 bits (250), Expect = 6e-20
Identities = 57/160 (35%), Positives = 93/160 (58%), Gaps = 3/160 (1%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R + DGD ++ NR P++H+ SM+ VR+LP S+ +N +P DFDGD ++ ++P
Sbjct: 445 RHMCDGDIIVFNRQPTLHKMSMMGHRVRILPWSTF-RLNLSVTTPYNADFDGDEMNLHLP 503
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQML 366
QS+ R E+ EL + R ++ QS R ++ + QD+LTA + V L E+ L M
Sbjct: 504 QSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMF 563
Query: 367 C---DKKLTPPPSIIKAPSRNNSLWSGKQLFSMLLPSNFD 477
D K+ P P+I+K LW+GKQ+FS+++P + +
Sbjct: 564 LSTWDGKV-PQPAILKP----RPLWTGKQIFSLIIPGHIN 598
[91][TOP]
>UniRef100_C1GGI7 DNA-directed RNA polymerase n=1 Tax=Paracoccidioides brasiliensis
Pb18 RepID=C1GGI7_PARBD
Length = 1458
Score = 100 bits (250), Expect = 6e-20
Identities = 61/164 (37%), Positives = 91/164 (55%), Gaps = 7/164 (4%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R + DGD VL NR PS+H+ S++S V+V P +N C+P DFDGD ++ ++P
Sbjct: 466 RHIEDGDIVLFNRQPSLHKLSILSHFVKVRP-HRTFRLNECVCNPYNADFDGDEMNLHVP 524
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQML 366
Q+ AR E EL+ + L+ ++G ++S QD +TAAYML V Y+ + +
Sbjct: 525 QTEEARAEAMELMGVKNNLVTPKNGEPIISAIQDFITAAYMLSSKNV---FYDRKTFTHV 581
Query: 367 CDKKL-------TPPPSIIKAPSRNNSLWSGKQLFSMLLPSNFD 477
C L PPPSI+K LW+GKQ+F++L+ N D
Sbjct: 582 CLYMLLPGTRFDLPPPSILKP----QMLWTGKQVFNILMRPNKD 621
[92][TOP]
>UniRef100_C0SHD3 DNA-directed RNA polymerase n=1 Tax=Paracoccidioides brasiliensis
Pb03 RepID=C0SHD3_PARBP
Length = 1449
Score = 100 bits (250), Expect = 6e-20
Identities = 61/164 (37%), Positives = 91/164 (55%), Gaps = 7/164 (4%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R + DGD VL NR PS+H+ S++S V+V P +N C+P DFDGD ++ ++P
Sbjct: 457 RHIEDGDIVLFNRQPSLHKLSILSHFVKVRP-HRTFRLNECVCNPYNADFDGDEMNLHVP 515
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQML 366
Q+ AR E EL+ + L+ ++G ++S QD +TAAYML V Y+ + +
Sbjct: 516 QTEEARAEAMELMGVKNNLVTPKNGEPIISAIQDFITAAYMLSSKNV---FYDRKTFTHV 572
Query: 367 CDKKL-------TPPPSIIKAPSRNNSLWSGKQLFSMLLPSNFD 477
C L PPPSI+K LW+GKQ+F++L+ N D
Sbjct: 573 CLYMLLPGTRFDLPPPSILKP----QMLWTGKQVFNILMRPNKD 612
[93][TOP]
>UniRef100_B8D6G9 DNA-directed RNA polymerase n=1 Tax=Desulfurococcus kamchatkensis
1221n RepID=B8D6G9_DESK1
Length = 886
Score = 100 bits (250), Expect = 6e-20
Identities = 60/159 (37%), Positives = 92/159 (57%), Gaps = 1/159 (0%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R L DGD VL NR PS+H+ S+++ VRVLP + +N L C P DFDGD ++ ++P
Sbjct: 413 RHLMDGDIVLFNRQPSLHRISVMAHVVRVLPYKTF-RLNLLVCPPYNADFDGDEMNLHVP 471
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQML 366
QS AR E L+ ++R ++ + G ++ QD ++ AY+L LL+ ++ L
Sbjct: 472 QSEEARAEARLLMLVERHILTPRYGGPIIGGLQDYISGAYILTSKTTLLDKDDVVDLLSS 531
Query: 367 CD-KKLTPPPSIIKAPSRNNSLWSGKQLFSMLLPSNFDY 480
K P P+I+K +LW+GKQL S+ LP +F+Y
Sbjct: 532 TGYKGELPEPAILKP----RALWTGKQLVSLFLPKDFNY 566
[94][TOP]
>UniRef100_UPI000179348F PREDICTED: similar to DNA-directed RNA polymerase II subunit RPB1
(RNA polymerase II subunit B1) (DNA-directed RNA
polymerase III largest subunit) n=1 Tax=Acyrthosiphon
pisum RepID=UPI000179348F
Length = 1862
Score = 100 bits (249), Expect = 8e-20
Identities = 57/158 (36%), Positives = 93/158 (58%), Gaps = 3/158 (1%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R + DGD V+ NR P++H+ SM+ VRVLP S+ +N C SP DFDGD ++ ++P
Sbjct: 441 RHIKDGDLVVFNRQPTLHKMSMMGHRVRVLPWSTF-RMNLSCTSPYNADFDGDEMNLHVP 499
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQM- 363
QS+ R E+ + RQ+I Q+ + ++ + QD+LTA + + V + ++ L M
Sbjct: 500 QSMETRAEVENIHITPRQIITPQANKPVMGIVQDTLTAIRKMTKRDVFIEKEQMMNLLMH 559
Query: 364 --LCDKKLTPPPSIIKAPSRNNSLWSGKQLFSMLLPSN 471
+ D K+ P P I+K +W+GKQ+FS+++P N
Sbjct: 560 LPIWDGKM-PTPCILKP----KPMWTGKQVFSLIIPGN 592
[95][TOP]
>UniRef100_Q1L5Y0 DNA-directed RNA polymerase (Fragment) n=1 Tax=Anthoceros sp.
JL-2005 RepID=Q1L5Y0_9EMBR
Length = 397
Score = 100 bits (249), Expect = 8e-20
Identities = 55/141 (39%), Positives = 83/141 (58%)
Frame = +1
Query: 139 PLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLME 318
P DFDGDC ++PQS+ + VE +EL+ +++QLIN Q G+ ++SL+QD+L A++L++
Sbjct: 1 PYNADFDGDCFSVFVPQSLPSIVECHELMTVEQQLINPQCGQPIVSLTQDTLLGAHLLVQ 60
Query: 319 DGVLLNLYEIQQLQMLCDKKLTPPPSIIKAPSRNNSLWSGKQLFSMLLPSNFDYSFPPNG 498
V L + L +L K+ P+I K+P W+GKQ+F M LP Y G
Sbjct: 61 GDVFLTRDYVGTLALLGSSKVA-IPAIYKSP--QGPRWTGKQVFGMTLPPTLKYQ--GGG 115
Query: 499 VSVSDGELTSSFESSGWLRDS 561
V + DGE+ S + S WL S
Sbjct: 116 VDIVDGEILDSDDGSKWLNSS 136
[96][TOP]
>UniRef100_Q6JU17 DNA-directed RNA polymerase (Fragment) n=1 Tax=Neogonodactylus
oerstedii RepID=Q6JU17_9CRUS
Length = 624
Score = 100 bits (249), Expect = 8e-20
Identities = 57/160 (35%), Positives = 94/160 (58%), Gaps = 3/160 (1%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R +TDGD V+ NR P++H+ SM+ V+VLP S+ +N SP DFDGD ++ ++P
Sbjct: 87 RHITDGDLVIFNRQPTLHKMSMMGHRVKVLPWSTF-RMNLSVTSPYNADFDGDEMNLHVP 145
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQM- 363
QS+ R E+ L R +I Q+ + ++ + QD+LTA + + V L +E+ L M
Sbjct: 146 QSMETRAEIENLHVTPRMIITPQANKPVMGIVQDTLTAVRKMTKRDVFLEKHEMMTLLMF 205
Query: 364 --LCDKKLTPPPSIIKAPSRNNSLWSGKQLFSMLLPSNFD 477
+ D ++ P P+I+K W+GKQ+FS+++P N +
Sbjct: 206 LPIWDGRM-PQPAILKP----KPYWTGKQIFSLIIPGNLN 240
[97][TOP]
>UniRef100_Q30BD8 DNA-directed RNA polymerase (Fragment) n=1 Tax=Cyanophora paradoxa
RepID=Q30BD8_CYAPA
Length = 1000
Score = 100 bits (248), Expect = 1e-19
Identities = 59/160 (36%), Positives = 98/160 (61%), Gaps = 6/160 (3%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R + DGD VL NR PS+H+ S+++ ++V+P S+ +N SP DFDGD ++ ++P
Sbjct: 348 RHIQDGDYVLFNRQPSLHKMSIMAHRIKVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVP 406
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYML------MEDGVLLNLYEI 348
QS R E +E++A+ RQ+++ QS R ++ + QD+L A+ + +E V++N+ +
Sbjct: 407 QSFETRAEASEIIAVPRQIVSPQSNRPVMGIVQDTLMASQKMTLRDTFIEKDVIMNI--V 464
Query: 349 QQLQMLCDKKLTPPPSIIKAPSRNNSLWSGKQLFSMLLPS 468
L D +L P P+I+K+P W+GKQLFS LP+
Sbjct: 465 MHLDSF-DGRL-PIPAIVKSP--KGPRWTGKQLFSTFLPN 500
[98][TOP]
>UniRef100_Q9NJL4 DNA-directed RNA polymerase (Fragment) n=1 Tax=Limnadia
lenticularis RepID=Q9NJL4_9CRUS
Length = 624
Score = 100 bits (248), Expect = 1e-19
Identities = 58/158 (36%), Positives = 92/158 (58%), Gaps = 3/158 (1%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R + DGD V+ NR P++H+ SM+ V+VLP S+ +N C SP DFDGD ++ ++P
Sbjct: 87 RHVHDGDLVVFNRQPTLHKMSMMGHRVKVLPWSTF-RMNLSCTSPYNADFDGDEMNLHVP 145
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQML 366
QS+ R E+ + RQ+I Q+ + ++ + QD+L A + + V L ++ L M
Sbjct: 146 QSMETRAEIENIHVTPRQIITPQANKPVMGIVQDTLCAVRKMTKRDVFLEKEQMMNLLMF 205
Query: 367 C---DKKLTPPPSIIKAPSRNNSLWSGKQLFSMLLPSN 471
D K+ P P+IIK LW+GKQLF++++P N
Sbjct: 206 LPTWDGKM-PQPAIIKP----RPLWTGKQLFTLIIPGN 238
[99][TOP]
>UniRef100_B4R348 DNA-directed RNA polymerase n=1 Tax=Drosophila simulans
RepID=B4R348_DROSI
Length = 1150
Score = 100 bits (248), Expect = 1e-19
Identities = 57/158 (36%), Positives = 91/158 (57%), Gaps = 3/158 (1%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R L D D V+ NR P++H+ SM+ V+VLP S+ +N C SP DFDGD ++ ++P
Sbjct: 440 RHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWSTF-RMNLSCTSPYNADFDGDEMNLHVP 498
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQML 366
QS+ R E+ + RQ+I Q+ + ++ + QD+LTA + + V + ++ L M
Sbjct: 499 QSMETRAEVENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFITREQVMNLLMF 558
Query: 367 C---DKKLTPPPSIIKAPSRNNSLWSGKQLFSMLLPSN 471
D K+ P P I+K LW+GKQ+FS+++P N
Sbjct: 559 LPTWDAKM-PQPCILKP----RPLWTGKQIFSLIIPGN 591
[100][TOP]
>UniRef100_B4IK28 DNA-directed RNA polymerase n=1 Tax=Drosophila sechellia
RepID=B4IK28_DROSE
Length = 1887
Score = 100 bits (248), Expect = 1e-19
Identities = 57/158 (36%), Positives = 91/158 (57%), Gaps = 3/158 (1%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R L D D V+ NR P++H+ SM+ V+VLP S+ +N C SP DFDGD ++ ++P
Sbjct: 440 RHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWSTF-RMNLSCTSPYNADFDGDEMNLHVP 498
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQML 366
QS+ R E+ + RQ+I Q+ + ++ + QD+LTA + + V + ++ L M
Sbjct: 499 QSMETRAEVENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFITREQVMNLLMF 558
Query: 367 C---DKKLTPPPSIIKAPSRNNSLWSGKQLFSMLLPSN 471
D K+ P P I+K LW+GKQ+FS+++P N
Sbjct: 559 LPTWDAKM-PQPCILKP----RPLWTGKQIFSLIIPGN 591
[101][TOP]
>UniRef100_A9UNH9 DNA-directed RNA polymerase n=1 Tax=Drosophila melanogaster
RepID=A9UNH9_DROME
Length = 1887
Score = 100 bits (248), Expect = 1e-19
Identities = 57/158 (36%), Positives = 91/158 (57%), Gaps = 3/158 (1%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R L D D V+ NR P++H+ SM+ V+VLP S+ +N C SP DFDGD ++ ++P
Sbjct: 440 RHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWSTF-RMNLSCTSPYNADFDGDEMNLHVP 498
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQML 366
QS+ R E+ + RQ+I Q+ + ++ + QD+LTA + + V + ++ L M
Sbjct: 499 QSMETRAEVENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFITREQVMNLLMF 558
Query: 367 C---DKKLTPPPSIIKAPSRNNSLWSGKQLFSMLLPSN 471
D K+ P P I+K LW+GKQ+FS+++P N
Sbjct: 559 LPTWDAKM-PQPCILKP----RPLWTGKQIFSLIIPGN 591
[102][TOP]
>UniRef100_A8PU11 DNA-directed RNA polymerase n=1 Tax=Brugia malayi
RepID=A8PU11_BRUMA
Length = 1943
Score = 100 bits (248), Expect = 1e-19
Identities = 55/158 (34%), Positives = 96/158 (60%), Gaps = 3/158 (1%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R + DGD ++ NR P++H+ SM+ V++LP S+ +N +P DFDGD ++ ++P
Sbjct: 513 RHMKDGDIIVFNRQPTLHKMSMMGHKVKILPWSTF-RLNLSVTTPYNADFDGDEMNLHLP 571
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQML 366
QS+ + E++E+ + RQLI Q+ + ++ + QD+LTA M+ + V + L + L M
Sbjct: 572 QSLETKAEVSEIAMVPRQLITPQANKPVMGIVQDTLTAVRMMTKRDVFIELPRMMDLLMQ 631
Query: 367 C---DKKLTPPPSIIKAPSRNNSLWSGKQLFSMLLPSN 471
D K+ P P+I+K LW+GKQ+F++++P N
Sbjct: 632 MPNWDGKV-PQPAILKP----KPLWTGKQVFTLIIPGN 664
[103][TOP]
>UniRef100_B8M2Y2 DNA-directed RNA polymerase n=1 Tax=Talaromyces stipitatus ATCC
10500 RepID=B8M2Y2_TALSN
Length = 1755
Score = 100 bits (248), Expect = 1e-19
Identities = 58/159 (36%), Positives = 88/159 (55%), Gaps = 2/159 (1%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R L DGD +L NR PS+H+ SM++ VRV+P S+ +N +P DFDGD ++ ++P
Sbjct: 450 RHLLDGDVILFNRQPSLHKESMMAHRVRVMPYSTF-RLNLSVTTPYNADFDGDEMNMHVP 508
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQML 366
QS AR EL EL + +++ Q L+ + QDSL Y + V L ++ L +
Sbjct: 509 QSEEARAELQELALVPLNIVSPQRNGPLMGIVQDSLCGIYKICRRDVFLTKDQVMNLMLW 568
Query: 367 CD--KKLTPPPSIIKAPSRNNSLWSGKQLFSMLLPSNFD 477
+ P P+I+K R W+GKQ+ SM+LPS +
Sbjct: 569 VPDWDGVIPQPAILKPRPR----WTGKQIISMVLPSGLN 603
[104][TOP]
>UniRef100_A7J590 DNA-directed RNA polymerase (Fragment) n=1 Tax=Coccocarpia
erythroxyli RepID=A7J590_9LECA
Length = 997
Score = 100 bits (248), Expect = 1e-19
Identities = 58/183 (31%), Positives = 97/183 (53%), Gaps = 11/183 (6%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R + DGD ++ NR PS H+ SM+ VRV+P S+ +N +P DFDGD ++ ++P
Sbjct: 350 RHIVDGDYIIFNRQPSXHKESMMGHRVRVMPYSTF-RLNLSVTTPYNADFDGDEMNLHVP 408
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQML 366
QS R E+N+L + +++ Q L+ + QD+L Y + V L +I + +
Sbjct: 409 QSEETRAEINQLCMVPLNIVSPQKNGPLMGIVQDTLCGIYKICRRDVFLTKEQIMNILLW 468
Query: 367 CD--KKLTPPPSIIKAPSRNNSLWSGKQLFSMLLPSNFDYSFP---------PNGVSVSD 513
+ P P+I+K R W+GKQ+ S+++P+ +++ P NG+ VS
Sbjct: 469 VPDWDGVLPQPAILKPRPR----WTGKQIISLVIPTGLNFTMPSGAGWSPLNDNGLMVSG 524
Query: 514 GEL 522
GEL
Sbjct: 525 GEL 527
[105][TOP]
>UniRef100_A4YCQ9 DNA-directed RNA polymerase n=1 Tax=Metallosphaera sedula DSM 5348
RepID=A4YCQ9_METS5
Length = 886
Score = 100 bits (248), Expect = 1e-19
Identities = 59/163 (36%), Positives = 89/163 (54%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R L DGD V+ NR PS+H+ SM+ VRVLP +N L C P DFDGD ++ ++P
Sbjct: 415 RHLVDGDIVIFNRQPSLHRISMMGHKVRVLP-GRTFRLNLLVCPPYNADFDGDEMNLHVP 473
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQML 366
QS A E EL+ + R ++ + G ++ +QD ++ AY+L LL E+Q + +
Sbjct: 474 QSEEAIAETKELMTVHRNILTPRYGGPIIGSAQDYISGAYLLTVKTTLLTEDEVQTILGV 533
Query: 367 CDKKLTPPPSIIKAPSRNNSLWSGKQLFSMLLPSNFDYSFPPN 495
+ I AP R L++GKQ+ S LP +F++ P N
Sbjct: 534 ANINKNLEEPAILAPKR---LYTGKQIVSHFLPEDFNFHGPAN 573
[106][TOP]
>UniRef100_P04052 DNA-directed RNA polymerase II subunit RPB1 n=2 Tax=Drosophila
melanogaster RepID=RPB1_DROME
Length = 1887
Score = 100 bits (248), Expect = 1e-19
Identities = 57/158 (36%), Positives = 91/158 (57%), Gaps = 3/158 (1%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R L D D V+ NR P++H+ SM+ V+VLP S+ +N C SP DFDGD ++ ++P
Sbjct: 440 RHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWSTF-RMNLSCTSPYNADFDGDEMNLHVP 498
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQML 366
QS+ R E+ + RQ+I Q+ + ++ + QD+LTA + + V + ++ L M
Sbjct: 499 QSMETRAEVENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFITREQVMNLLMF 558
Query: 367 C---DKKLTPPPSIIKAPSRNNSLWSGKQLFSMLLPSN 471
D K+ P P I+K LW+GKQ+FS+++P N
Sbjct: 559 LPTWDAKM-PQPCILKP----RPLWTGKQIFSLIIPGN 591
[107][TOP]
>UniRef100_Q9XZU9 DNA-directed RNA polymerase n=1 Tax=Drosophila subobscura
RepID=Q9XZU9_DROSU
Length = 1889
Score = 99.8 bits (247), Expect = 1e-19
Identities = 57/158 (36%), Positives = 91/158 (57%), Gaps = 3/158 (1%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R L D D V+ NR P++H+ SM+ V+VLP S+ +N C SP DFDGD ++ ++P
Sbjct: 440 RHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWSTF-RMNLSCTSPYNADFDGDEMNLHVP 498
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQML 366
QS+ R E+ + RQ+I Q+ + ++ + QD+LTA + + V + ++ L M
Sbjct: 499 QSMETRAEVENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFITREQVMNLLMF 558
Query: 367 C---DKKLTPPPSIIKAPSRNNSLWSGKQLFSMLLPSN 471
D K+ P P I+K LW+GKQ+FS+++P N
Sbjct: 559 LPTWDGKM-PQPCILKP----RPLWTGKQIFSLIIPGN 591
[108][TOP]
>UniRef100_Q9XZU8 DNA-directed RNA polymerase (Fragment) n=1 Tax=Drosophila
pseudoobscura pseudoobscura RepID=Q9XZU8_DROPS
Length = 1811
Score = 99.8 bits (247), Expect = 1e-19
Identities = 57/158 (36%), Positives = 91/158 (57%), Gaps = 3/158 (1%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R L D D V+ NR P++H+ SM+ V+VLP S+ +N C SP DFDGD ++ ++P
Sbjct: 362 RHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWSTF-RMNLSCTSPYNADFDGDEMNLHVP 420
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQML 366
QS+ R E+ + RQ+I Q+ + ++ + QD+LTA + + V + ++ L M
Sbjct: 421 QSMETRAEVENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFITREQVMNLLMF 480
Query: 367 C---DKKLTPPPSIIKAPSRNNSLWSGKQLFSMLLPSN 471
D K+ P P I+K LW+GKQ+FS+++P N
Sbjct: 481 LPTWDGKM-PQPCILKP----RPLWTGKQIFSLIIPGN 513
[109][TOP]
>UniRef100_Q9XZS2 DNA-directed RNA polymerase n=1 Tax=Drosophila madeirensis
RepID=Q9XZS2_DROMD
Length = 1889
Score = 99.8 bits (247), Expect = 1e-19
Identities = 57/158 (36%), Positives = 91/158 (57%), Gaps = 3/158 (1%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R L D D V+ NR P++H+ SM+ V+VLP S+ +N C SP DFDGD ++ ++P
Sbjct: 440 RHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWSTF-RMNLSCTSPYNADFDGDEMNLHVP 498
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQML 366
QS+ R E+ + RQ+I Q+ + ++ + QD+LTA + + V + ++ L M
Sbjct: 499 QSMETRAEVENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFITREQVMNLLMF 558
Query: 367 C---DKKLTPPPSIIKAPSRNNSLWSGKQLFSMLLPSN 471
D K+ P P I+K LW+GKQ+FS+++P N
Sbjct: 559 LPTWDGKM-PQPCILKP----RPLWTGKQIFSLIIPGN 591
[110][TOP]
>UniRef100_Q9XZS1 DNA-directed RNA polymerase n=1 Tax=Drosophila guanche
RepID=Q9XZS1_DROGU
Length = 1889
Score = 99.8 bits (247), Expect = 1e-19
Identities = 57/158 (36%), Positives = 91/158 (57%), Gaps = 3/158 (1%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R L D D V+ NR P++H+ SM+ V+VLP S+ +N C SP DFDGD ++ ++P
Sbjct: 440 RHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWSTF-RMNLSCTSPYNADFDGDEMNLHVP 498
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQML 366
QS+ R E+ + RQ+I Q+ + ++ + QD+LTA + + V + ++ L M
Sbjct: 499 QSMETRAEVENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFITREQVMNLLMF 558
Query: 367 C---DKKLTPPPSIIKAPSRNNSLWSGKQLFSMLLPSN 471
D K+ P P I+K LW+GKQ+FS+++P N
Sbjct: 559 LPTWDGKM-PQPCILKP----RPLWTGKQIFSLIIPGN 591
[111][TOP]
>UniRef100_Q9NJN2 DNA-directed RNA polymerase (Fragment) n=1 Tax=Semibalanus
balanoides RepID=Q9NJN2_SEMBA
Length = 624
Score = 99.8 bits (247), Expect = 1e-19
Identities = 58/158 (36%), Positives = 91/158 (57%), Gaps = 3/158 (1%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R + DGD V+ NR P++H+ SM+ V+VLP S+ +N SP DFDGD ++ ++P
Sbjct: 87 RHIIDGDLVIFNRQPTLHKMSMMGHRVKVLPWSTF-RMNLSVTSPYNADFDGDEMNLHVP 145
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQML 366
QS+ R E+ + R ++ QS + ++ + QD+LTA + + V L E+ + M
Sbjct: 146 QSMETRAEIENMHVTPRMIVTPQSNKPVMGIVQDTLTAVRKMTKRDVFLEKEEMMNMLMF 205
Query: 367 C---DKKLTPPPSIIKAPSRNNSLWSGKQLFSMLLPSN 471
D K+ P P+IIK LW+GKQLFS+++P N
Sbjct: 206 LPTWDGKI-PVPAIIKP----RPLWTGKQLFSLIIPGN 238
[112][TOP]
>UniRef100_Q9NJN0 DNA-directed RNA polymerase (Fragment) n=1 Tax=Ctenolepisma lineata
RepID=Q9NJN0_CTELI
Length = 624
Score = 99.8 bits (247), Expect = 1e-19
Identities = 58/158 (36%), Positives = 93/158 (58%), Gaps = 3/158 (1%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R + DGD V+ NR P++H+ SM+ V+VLP S+ +N SP DFDGD ++ ++P
Sbjct: 87 RHIRDGDLVIFNRQPTLHKMSMMGHRVKVLPWSTF-RMNLSVTSPYNADFDGDEMNLHVP 145
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQM- 363
QS+ R E+ + RQ+I QS + ++ + QD+LTA + + V L ++ + M
Sbjct: 146 QSMETRAEVENIHVTPRQIITPQSNKPVMGIVQDTLTAVRKMTKRDVFLEKEQMMNILMH 205
Query: 364 --LCDKKLTPPPSIIKAPSRNNSLWSGKQLFSMLLPSN 471
+ D K+ P PSI+K LW+GKQ+FS+++P N
Sbjct: 206 LPIWDGKM-PYPSILKP----KPLWTGKQVFSLIIPGN 238
[113][TOP]
>UniRef100_Q29IN2 DNA-directed RNA polymerase n=1 Tax=Drosophila pseudoobscura
pseudoobscura RepID=Q29IN2_DROPS
Length = 1889
Score = 99.8 bits (247), Expect = 1e-19
Identities = 57/158 (36%), Positives = 91/158 (57%), Gaps = 3/158 (1%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R L D D V+ NR P++H+ SM+ V+VLP S+ +N C SP DFDGD ++ ++P
Sbjct: 440 RHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWSTF-RMNLSCTSPYNADFDGDEMNLHVP 498
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQML 366
QS+ R E+ + RQ+I Q+ + ++ + QD+LTA + + V + ++ L M
Sbjct: 499 QSMETRAEVENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFITREQVMNLLMF 558
Query: 367 C---DKKLTPPPSIIKAPSRNNSLWSGKQLFSMLLPSN 471
D K+ P P I+K LW+GKQ+FS+++P N
Sbjct: 559 LPTWDGKM-PQPCILKP----RPLWTGKQIFSLIIPGN 591
[114][TOP]
>UniRef100_B4PY98 DNA-directed RNA polymerase n=1 Tax=Drosophila yakuba
RepID=B4PY98_DROYA
Length = 1889
Score = 99.8 bits (247), Expect = 1e-19
Identities = 57/158 (36%), Positives = 91/158 (57%), Gaps = 3/158 (1%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R L D D V+ NR P++H+ SM+ V+VLP S+ +N C SP DFDGD ++ ++P
Sbjct: 440 RHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWSTF-RMNLSCTSPYNADFDGDEMNLHVP 498
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQML 366
QS+ R E+ + RQ+I Q+ + ++ + QD+LTA + + V + ++ L M
Sbjct: 499 QSMETRAEVENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFITREQVMNLLMF 558
Query: 367 C---DKKLTPPPSIIKAPSRNNSLWSGKQLFSMLLPSN 471
D K+ P P I+K LW+GKQ+FS+++P N
Sbjct: 559 LPTWDGKM-PQPCILKP----RPLWTGKQIFSLIIPGN 591
[115][TOP]
>UniRef100_B4MAN9 DNA-directed RNA polymerase n=1 Tax=Drosophila virilis
RepID=B4MAN9_DROVI
Length = 1889
Score = 99.8 bits (247), Expect = 1e-19
Identities = 57/158 (36%), Positives = 91/158 (57%), Gaps = 3/158 (1%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R L D D V+ NR P++H+ SM+ V+VLP S+ +N C SP DFDGD ++ ++P
Sbjct: 440 RHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWSTF-RMNLSCTSPYNADFDGDEMNLHVP 498
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQML 366
QS+ R E+ + RQ+I Q+ + ++ + QD+LTA + + V + ++ L M
Sbjct: 499 QSMETRAEVENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFITREQVMNLLMF 558
Query: 367 C---DKKLTPPPSIIKAPSRNNSLWSGKQLFSMLLPSN 471
D K+ P P I+K LW+GKQ+FS+++P N
Sbjct: 559 LPTWDGKM-PQPCILKP----RPLWTGKQIFSLIIPGN 591
[116][TOP]
>UniRef100_B4L732 DNA-directed RNA polymerase n=1 Tax=Drosophila mojavensis
RepID=B4L732_DROMO
Length = 1889
Score = 99.8 bits (247), Expect = 1e-19
Identities = 57/158 (36%), Positives = 91/158 (57%), Gaps = 3/158 (1%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R L D D V+ NR P++H+ SM+ V+VLP S+ +N C SP DFDGD ++ ++P
Sbjct: 440 RHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWSTF-RMNLSCTSPYNADFDGDEMNLHVP 498
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQML 366
QS+ R E+ + RQ+I Q+ + ++ + QD+LTA + + V + ++ L M
Sbjct: 499 QSMETRAEVENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFITREQVMNLLMF 558
Query: 367 C---DKKLTPPPSIIKAPSRNNSLWSGKQLFSMLLPSN 471
D K+ P P I+K LW+GKQ+FS+++P N
Sbjct: 559 LPTWDGKM-PQPCILKP----RPLWTGKQIFSLIIPGN 591
[117][TOP]
>UniRef100_B4JXA6 DNA-directed RNA polymerase n=1 Tax=Drosophila grimshawi
RepID=B4JXA6_DROGR
Length = 1889
Score = 99.8 bits (247), Expect = 1e-19
Identities = 57/158 (36%), Positives = 91/158 (57%), Gaps = 3/158 (1%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R L D D V+ NR P++H+ SM+ V+VLP S+ +N C SP DFDGD ++ ++P
Sbjct: 440 RHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWSTF-RMNLSCTSPYNADFDGDEMNLHVP 498
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQML 366
QS+ R E+ + RQ+I Q+ + ++ + QD+LTA + + V + ++ L M
Sbjct: 499 QSMETRAEVENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFITREQVMNLLMF 558
Query: 367 C---DKKLTPPPSIIKAPSRNNSLWSGKQLFSMLLPSN 471
D K+ P P I+K LW+GKQ+FS+++P N
Sbjct: 559 LPTWDGKM-PQPCILKP----RPLWTGKQIFSLIIPGN 591
[118][TOP]
>UniRef100_B4H2R8 DNA-directed RNA polymerase n=1 Tax=Drosophila persimilis
RepID=B4H2R8_DROPE
Length = 1804
Score = 99.8 bits (247), Expect = 1e-19
Identities = 57/158 (36%), Positives = 91/158 (57%), Gaps = 3/158 (1%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R L D D V+ NR P++H+ SM+ V+VLP S+ +N C SP DFDGD ++ ++P
Sbjct: 440 RHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWSTF-RMNLSCTSPYNADFDGDEMNLHVP 498
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQML 366
QS+ R E+ + RQ+I Q+ + ++ + QD+LTA + + V + ++ L M
Sbjct: 499 QSMETRAEVENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFITREQVMNLLMF 558
Query: 367 C---DKKLTPPPSIIKAPSRNNSLWSGKQLFSMLLPSN 471
D K+ P P I+K LW+GKQ+FS+++P N
Sbjct: 559 LPTWDGKM-PQPCILKP----RPLWTGKQIFSLIIPGN 591
[119][TOP]
>UniRef100_B3NUC1 DNA-directed RNA polymerase n=1 Tax=Drosophila erecta
RepID=B3NUC1_DROER
Length = 1889
Score = 99.8 bits (247), Expect = 1e-19
Identities = 57/158 (36%), Positives = 91/158 (57%), Gaps = 3/158 (1%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R L D D V+ NR P++H+ SM+ V+VLP S+ +N C SP DFDGD ++ ++P
Sbjct: 440 RHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWSTF-RMNLSCTSPYNADFDGDEMNLHVP 498
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQML 366
QS+ R E+ + RQ+I Q+ + ++ + QD+LTA + + V + ++ L M
Sbjct: 499 QSMETRAEVENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFITREQVMNLLMF 558
Query: 367 C---DKKLTPPPSIIKAPSRNNSLWSGKQLFSMLLPSN 471
D K+ P P I+K LW+GKQ+FS+++P N
Sbjct: 559 LPTWDGKM-PQPCILKP----RPLWTGKQIFSLIIPGN 591
[120][TOP]
>UniRef100_Q1E2G9 DNA-directed RNA polymerase n=1 Tax=Coccidioides immitis
RepID=Q1E2G9_COCIM
Length = 1750
Score = 99.8 bits (247), Expect = 1e-19
Identities = 56/159 (35%), Positives = 90/159 (56%), Gaps = 2/159 (1%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R L DGD +L NR PS+H+ SM++ VRV+P S+ +N +P DFDGD ++ ++P
Sbjct: 452 RHLMDGDVILFNRQPSLHKESMMAHRVRVMPYSTF-RLNLSVTTPYNADFDGDEMNLHVP 510
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQML 366
QS AR ELN+L + +++ Q L+ + QD+L Y + V L ++ + +
Sbjct: 511 QSEEARAELNQLCLVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLTKEQVMNMMLW 570
Query: 367 CDK--KLTPPPSIIKAPSRNNSLWSGKQLFSMLLPSNFD 477
+ + P P+I+K R W+GKQ+ SM+LPS +
Sbjct: 571 VPEWDGVLPQPAILKPRPR----WTGKQMISMVLPSGLN 605
[121][TOP]
>UniRef100_C8VQG7 DNA-directed RNA polymerase (EC 2.7.7.6)
[Source:UniProtKB/TrEMBL;Acc:Q873Q6] n=2 Tax=Emericella
nidulans RepID=C8VQG7_EMENI
Length = 1745
Score = 99.8 bits (247), Expect = 1e-19
Identities = 56/159 (35%), Positives = 87/159 (54%), Gaps = 2/159 (1%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R L DGD +L NR PS+H+ SM+ VRV+P S+ +N SP DFDGD ++ ++P
Sbjct: 448 RHLMDGDVILFNRQPSLHKESMMGHRVRVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVP 506
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQML 366
QS +R EL +L + + +++ Q L+ + QD+L Y + V L ++ + M
Sbjct: 507 QSEESRAELQQLALVPQNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLTKEQVMNIMMW 566
Query: 367 CD--KKLTPPPSIIKAPSRNNSLWSGKQLFSMLLPSNFD 477
+ PPP+I K R W+GKQ+ SM+ PS +
Sbjct: 567 VPDWDGVIPPPAIFKPRPR----WTGKQMISMVFPSGLN 601
[122][TOP]
>UniRef100_C5PAJ4 DNA-directed RNA polymerase n=1 Tax=Coccidioides posadasii C735
delta SOWgp RepID=C5PAJ4_COCP7
Length = 1746
Score = 99.8 bits (247), Expect = 1e-19
Identities = 56/159 (35%), Positives = 90/159 (56%), Gaps = 2/159 (1%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R L DGD +L NR PS+H+ SM++ VRV+P S+ +N +P DFDGD ++ ++P
Sbjct: 452 RHLMDGDVILFNRQPSLHKESMMAHRVRVMPYSTF-RLNLSVTTPYNADFDGDEMNLHVP 510
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQML 366
QS AR ELN+L + +++ Q L+ + QD+L Y + V L ++ + +
Sbjct: 511 QSEEARAELNQLCLVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLTKEQVMNMMLW 570
Query: 367 CDK--KLTPPPSIIKAPSRNNSLWSGKQLFSMLLPSNFD 477
+ + P P+I+K R W+GKQ+ SM+LPS +
Sbjct: 571 VPEWDGVLPQPAILKPRPR----WTGKQMISMVLPSGLN 605
[123][TOP]
>UniRef100_A1YIA6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Trichophyton rubrum
RepID=A1YIA6_TRIRU
Length = 1015
Score = 99.8 bits (247), Expect = 1e-19
Identities = 58/159 (36%), Positives = 89/159 (55%), Gaps = 2/159 (1%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R L DGD +L NR PS+H+ SM+S VRV+P S+ +N +P DFDGD ++ ++P
Sbjct: 367 RHLMDGDFILFNRQPSLHKESMMSHRVRVMPYSTF-RLNLSVTTPYNADFDGDEMNLHVP 425
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQML 366
QS AR ELN+L + +++ Q L+ + QD+L Y + V L ++ + +
Sbjct: 426 QSEEARAELNQLCLVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLTKEQVMNVLLW 485
Query: 367 CD--KKLTPPPSIIKAPSRNNSLWSGKQLFSMLLPSNFD 477
+ P P+I+K R WSGKQ+ SM+LPS +
Sbjct: 486 VPDWDGVLPQPAILKPRPR----WSGKQMISMVLPSGLN 520
[124][TOP]
>UniRef100_A3DMP4 DNA-directed RNA polymerase n=1 Tax=Staphylothermus marinus F1
RepID=A3DMP4_STAMF
Length = 886
Score = 99.8 bits (247), Expect = 1e-19
Identities = 57/162 (35%), Positives = 92/162 (56%), Gaps = 1/162 (0%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R L DGD VL NR PS+H+ S+++ VRVLP + +N L C P DFDGD ++ ++P
Sbjct: 413 RHLRDGDIVLFNRQPSLHRISIMAHVVRVLPYKTF-RLNLLVCPPYNADFDGDEMNLHVP 471
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQML 366
QS AR E L+ +++ ++ + G ++ QD ++ A++L LL ++ +L +
Sbjct: 472 QSEEARAEARMLMLVEKHILTPRYGGPIIGGLQDYISGAFLLTSKSTLLTREDVIELLGV 531
Query: 367 CD-KKLTPPPSIIKAPSRNNSLWSGKQLFSMLLPSNFDYSFP 489
+ P P+I+K W+GKQL S+ LP +F+Y P
Sbjct: 532 AGYRGKLPEPAILKP----KQYWTGKQLISLFLPDDFNYKRP 569
[125][TOP]
>UniRef100_Q1L5X9 DNA-directed RNA polymerase (Fragment) n=1 Tax=Marchantia
polymorpha RepID=Q1L5X9_MARPO
Length = 1008
Score = 99.4 bits (246), Expect = 2e-19
Identities = 49/142 (34%), Positives = 79/142 (55%)
Frame = +1
Query: 139 PLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLME 318
P DFDGDCLH ++PQ+ +R EL++L+ + Q++ +L LSQD + A Y++
Sbjct: 1 PYNADFDGDCLHVFVPQTEESRAELHQLMTIPAQILPSPDENTILGLSQDYVLATYLVTS 60
Query: 319 DGVLLNLYEIQQLQMLCDKKLTPPPSIIKAPSRNNSLWSGKQLFSMLLPSNFDYSFPPNG 498
+ L + QL M K+L P P+I+K+P + LW+GKQ+ + +P F +
Sbjct: 61 SPLFLPKDSMHQLAMWTKKQL-PVPTIVKSP-KLGPLWTGKQVIDLAIPEGFSFQSNNGA 118
Query: 499 VSVSDGELTSSFESSGWLRDSE 564
+ DGE+ S E S WL ++
Sbjct: 119 TRIHDGEILSCGEKSNWLASTK 140
[126][TOP]
>UniRef100_A4HJP9 DNA-directed RNA polymerase n=1 Tax=Leishmania braziliensis
RepID=A4HJP9_LEIBR
Length = 1662
Score = 99.4 bits (246), Expect = 2e-19
Identities = 53/153 (34%), Positives = 88/153 (57%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R + DGD VL NR P++H+ SM+ VRVL ++ +N C +P DFDGD ++ ++P
Sbjct: 416 RHIIDGDVVLFNRQPTLHRMSMMGHRVRVLNYNTF-RLNLSCTTPYNADFDGDEMNLHVP 474
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQML 366
QS+ + EL E++ + + ++ + + QDSL +Y L + ++ Y IQ + +
Sbjct: 475 QSLLTKAELIEMMMVPKNFVSPNKSAPCMGIVQDSLLGSYRLTDKDTFVDKYFIQSVALW 534
Query: 367 CDKKLTPPPSIIKAPSRNNSLWSGKQLFSMLLP 465
D P P+I+K LW+GKQ+FS++LP
Sbjct: 535 LDLWELPIPAILKP----RPLWTGKQIFSLILP 563
[127][TOP]
>UniRef100_Q756K2 DNA-directed RNA polymerase n=1 Tax=Eremothecium gossypii
RepID=Q756K2_ASHGO
Length = 1459
Score = 99.4 bits (246), Expect = 2e-19
Identities = 57/159 (35%), Positives = 92/159 (57%), Gaps = 4/159 (2%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R L DGD VL NR PS+H+ S++S ++ P + +N C+P DFDGD ++ ++P
Sbjct: 463 RHLEDGDVVLFNRQPSLHRLSILSHYAKIRPWRTF-RLNECVCTPYNADFDGDEMNLHVP 521
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLM-EDGVLLNLYEIQQLQM 363
Q+ AR E L+ + L+ +SG +++ +QD +T +Y++ +D +Q L M
Sbjct: 522 QTEEARAEAINLMGVKNNLLTPKSGEPIIAATQDFITGSYLISHKDSFFDRATFVQMLSM 581
Query: 364 LCDKKL---TPPPSIIKAPSRNNSLWSGKQLFSMLLPSN 471
+ D L PPP+I+ R + LW+GKQLFS+L+ N
Sbjct: 582 MSDGNLQFDIPPPAIM----RPHYLWTGKQLFSLLIKPN 616
[128][TOP]
>UniRef100_UPI000051A77E PREDICTED: similar to DNA-directed RNA polymerase II largest
subunit isoform 2 n=1 Tax=Apis mellifera
RepID=UPI000051A77E
Length = 1422
Score = 99.0 bits (245), Expect = 2e-19
Identities = 56/158 (35%), Positives = 91/158 (57%), Gaps = 3/158 (1%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R + DGD V+ NR P++H+ SM+ V+VLP S+ +N C SP DFDGD ++ + P
Sbjct: 440 RHIRDGDLVIFNRQPTLHKMSMMGHRVKVLPWSTF-RMNLSCTSPYNADFDGDEMNLHAP 498
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQML 366
QS+ R E+ + RQ+I Q+ + ++ + QD+LTA + + V + ++ + M
Sbjct: 499 QSMETRAEVENIHVTPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFIEKEQMMNILMF 558
Query: 367 C---DKKLTPPPSIIKAPSRNNSLWSGKQLFSMLLPSN 471
D K+ P P I+K LW+GKQ+FS+++P N
Sbjct: 559 LPSWDGKM-PQPCILKP----KPLWTGKQIFSLIIPGN 591
[129][TOP]
>UniRef100_Q9NJR9 DNA-directed RNA polymerase n=1 Tax=Leishmania donovani
RepID=Q9NJR9_LEIDO
Length = 1665
Score = 99.0 bits (245), Expect = 2e-19
Identities = 53/153 (34%), Positives = 88/153 (57%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R + DGD VL NR P++H+ SM+ VRVL ++ +N C +P DFDGD ++ ++P
Sbjct: 416 RHVIDGDVVLFNRQPTLHRMSMMGHRVRVLNYNTF-RLNLSCTTPYNADFDGDEMNLHVP 474
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQML 366
QS+ + EL E++ + + ++ + + QDSL +Y L + ++ Y IQ + +
Sbjct: 475 QSLLTKAELIEMMMVPKNFVSPNKSAPCMGIVQDSLLGSYRLTDKDTFVDKYFIQSVALW 534
Query: 367 CDKKLTPPPSIIKAPSRNNSLWSGKQLFSMLLP 465
D P P+I+K LW+GKQ+FS++LP
Sbjct: 535 LDLWELPIPAILKP----RPLWTGKQIFSLILP 563
[130][TOP]
>UniRef100_Q9BJ59 DNA-directed RNA polymerase n=1 Tax=Leptomonas seymouri
RepID=Q9BJ59_LEPSE
Length = 1657
Score = 99.0 bits (245), Expect = 2e-19
Identities = 53/153 (34%), Positives = 88/153 (57%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R + DGD VL NR P++H+ SM+ VRVL ++ +N C +P DFDGD ++ ++P
Sbjct: 416 RHVIDGDVVLFNRQPTLHRMSMMGHRVRVLNYNTF-RLNLSCTTPYNADFDGDEMNLHVP 474
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQML 366
QS+ + EL E++ + + ++ + + QDSL +Y L + ++ Y IQ + +
Sbjct: 475 QSLLTKAELIEMMMVPKNFVSPNKSAPCMGIVQDSLLGSYRLTDKDTFVDKYFIQSVALW 534
Query: 367 CDKKLTPPPSIIKAPSRNNSLWSGKQLFSMLLP 465
D P P+I+K LW+GKQ+FS++LP
Sbjct: 535 LDLWELPIPAILKP----RPLWTGKQIFSLILP 563
[131][TOP]
>UniRef100_Q7Q3C6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Anopheles gambiae
RepID=Q7Q3C6_ANOGA
Length = 1878
Score = 99.0 bits (245), Expect = 2e-19
Identities = 56/158 (35%), Positives = 92/158 (58%), Gaps = 3/158 (1%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R L D D V+ NR P++H+ SM+ V+VLP S+ +N C SP DFDGD ++ ++P
Sbjct: 438 RHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWSTF-RMNLSCTSPYNADFDGDEMNLHVP 496
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQML 366
QS+ R E+ + RQ+I Q+ + ++ + QD+LTA + + V + ++ L M
Sbjct: 497 QSMETRAEIENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFIEKEQMMNLLMF 556
Query: 367 C---DKKLTPPPSIIKAPSRNNSLWSGKQLFSMLLPSN 471
D K+ P P+I+K LW+GKQ+F++++P N
Sbjct: 557 LPTWDGKM-PQPAILKP----KPLWTGKQIFTLIIPGN 589
[132][TOP]
>UniRef100_Q4Q600 DNA-directed RNA polymerase n=1 Tax=Leishmania major
RepID=Q4Q600_LEIMA
Length = 1662
Score = 99.0 bits (245), Expect = 2e-19
Identities = 53/153 (34%), Positives = 88/153 (57%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R + DGD VL NR P++H+ SM+ VRVL ++ +N C +P DFDGD ++ ++P
Sbjct: 416 RHVIDGDVVLFNRQPTLHRMSMMGHRVRVLNYNTF-RLNLSCTTPYNADFDGDEMNLHVP 474
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQML 366
QS+ + EL E++ + + ++ + + QDSL +Y L + ++ Y IQ + +
Sbjct: 475 QSLLTKAELIEMMMVPKNFVSPNKSAPCMGIVQDSLLGSYRLTDKDTFVDKYFIQSVALW 534
Query: 367 CDKKLTPPPSIIKAPSRNNSLWSGKQLFSMLLP 465
D P P+I+K LW+GKQ+FS++LP
Sbjct: 535 LDLWELPIPAILKP----RPLWTGKQIFSLILP 563
[133][TOP]
>UniRef100_B3MQ29 DNA-directed RNA polymerase n=1 Tax=Drosophila ananassae
RepID=B3MQ29_DROAN
Length = 1889
Score = 99.0 bits (245), Expect = 2e-19
Identities = 57/158 (36%), Positives = 91/158 (57%), Gaps = 3/158 (1%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R L D D V+ NR P++H+ SM+ V+VLP S+ +N C SP DFDGD ++ ++P
Sbjct: 440 RHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWSTF-RMNLSCTSPYNADFDGDEMNLHVP 498
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQML 366
QS+ R E+ + RQ+I Q+ + ++ + QD+LTA + + V + ++ L M
Sbjct: 499 QSMETRAEVENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFITREQMMNLLMF 558
Query: 367 C---DKKLTPPPSIIKAPSRNNSLWSGKQLFSMLLPSN 471
D K+ P P I+K LW+GKQ+FS+++P N
Sbjct: 559 LPTWDGKM-PQPCILKP----RPLWTGKQIFSLIIPGN 591
[134][TOP]
>UniRef100_B0XAQ9 DNA-directed RNA polymerase n=1 Tax=Culex quinquefasciatus
RepID=B0XAQ9_CULQU
Length = 1874
Score = 99.0 bits (245), Expect = 2e-19
Identities = 57/158 (36%), Positives = 91/158 (57%), Gaps = 3/158 (1%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R L D D V+ NR P++H+ SM+ V+VLP S+ +N C SP DFDGD ++ ++P
Sbjct: 438 RHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWSTF-RMNLSCTSPYNADFDGDEMNLHVP 496
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQML 366
QS+ R E+ + RQ+I Q+ + ++ + QD+LTA + + V L ++ L M
Sbjct: 497 QSMETRAEIENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFLEKEQMMNLLMF 556
Query: 367 C---DKKLTPPPSIIKAPSRNNSLWSGKQLFSMLLPSN 471
D K+ P P I+K LW+GKQ+F++++P N
Sbjct: 557 LPTWDGKM-PQPCILKP----KPLWTGKQIFTLIIPGN 589
[135][TOP]
>UniRef100_A4I766 DNA-directed RNA polymerase n=1 Tax=Leishmania infantum
RepID=A4I766_LEIIN
Length = 1662
Score = 99.0 bits (245), Expect = 2e-19
Identities = 53/153 (34%), Positives = 88/153 (57%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R + DGD VL NR P++H+ SM+ VRVL ++ +N C +P DFDGD ++ ++P
Sbjct: 416 RHVIDGDVVLFNRQPTLHRMSMMGHRVRVLNYNTF-RLNLSCTTPYNADFDGDEMNLHVP 474
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQML 366
QS+ + EL E++ + + ++ + + QDSL +Y L + ++ Y IQ + +
Sbjct: 475 QSLLTKAELIEMMMVPKNFVSPNKSAPCMGIVQDSLLGSYRLTDKDTFVDKYFIQSVALW 534
Query: 367 CDKKLTPPPSIIKAPSRNNSLWSGKQLFSMLLP 465
D P P+I+K LW+GKQ+FS++LP
Sbjct: 535 LDLWELPIPAILKP----RPLWTGKQIFSLILP 563
[136][TOP]
>UniRef100_B6QAY2 DNA-directed RNA polymerase n=1 Tax=Penicillium marneffei ATCC
18224 RepID=B6QAY2_PENMQ
Length = 1744
Score = 99.0 bits (245), Expect = 2e-19
Identities = 58/159 (36%), Positives = 87/159 (54%), Gaps = 2/159 (1%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R L DGD +L NR PS+H+ SM+ VRV+P S+ +N +P DFDGD ++ ++P
Sbjct: 450 RHLLDGDVILFNRQPSLHKESMMGHRVRVMPYSTF-RLNLSVTTPYNADFDGDEMNMHVP 508
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQML 366
QS AR EL +L + +++ Q L+ + QDSL Y + V L ++ L +
Sbjct: 509 QSEEARAELLQLALVPNNIVSPQRNGPLMGIVQDSLCGIYKICRRDVFLTKDQVMNLMLW 568
Query: 367 CD--KKLTPPPSIIKAPSRNNSLWSGKQLFSMLLPSNFD 477
+ P P+IIK R W+GKQ+ SM+LPS +
Sbjct: 569 VPDWDGVIPQPAIIKPRPR----WTGKQIISMVLPSGLN 603
[137][TOP]
>UniRef100_A7J5B1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Teloschistes exilis
RepID=A7J5B1_9LECA
Length = 1003
Score = 99.0 bits (245), Expect = 2e-19
Identities = 58/181 (32%), Positives = 98/181 (54%), Gaps = 9/181 (4%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R + DGD ++ NR PS H+ SM+ VRV+P S+ +N SP DFDGD ++ ++P
Sbjct: 358 RHIVDGDFIIFNRQPSXHKESMMGHRVRVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVP 416
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQML 366
QS R E+N+L + +++ Q L+ + QD+L Y + V LN ++ + +
Sbjct: 417 QSEETRAEVNQLCMVPLNIVSPQRNSPLMGIVQDTLCGIYKICRRDVFLNQEQVMNILLW 476
Query: 367 CDK--KLTPPPSIIKAPSRNNSLWSGKQLFSMLLPSNF------DYS-FPPNGVSVSDGE 519
+ + P P+++K LW+GKQ+ S+++P+ DY+ +G+ VS GE
Sbjct: 477 VPEWDGIIPQPAVLKP----TPLWTGKQIVSLVIPAGLNLVKGSDYAPLKDDGIFVSSGE 532
Query: 520 L 522
L
Sbjct: 533 L 533
[138][TOP]
>UniRef100_A5H2F1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Tornabea
scutellifera RepID=A5H2F1_9LECA
Length = 993
Score = 99.0 bits (245), Expect = 2e-19
Identities = 58/181 (32%), Positives = 98/181 (54%), Gaps = 9/181 (4%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R + DGD ++ NR PS+H+ SM+ VRV+P S+ +N SP DFDGD ++ ++P
Sbjct: 349 RHIVDGDFIIFNRQPSLHKESMMGHRVRVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVP 407
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQML 366
QS R E+N+L + +++ Q L+ + QD+L Y + V LN ++ + +
Sbjct: 408 QSEETRAEVNQLCMVPLNIVSPQRNSPLMGIVQDTLCGIYKICRRDVFLNHEQVMNILLW 467
Query: 367 CDK--KLTPPPSIIKAPSRNNSLWSGKQLFSMLLPSNF------DYS-FPPNGVSVSDGE 519
+ + P P+++K LW+GKQ+ S+++PS DY+ G+ V+ GE
Sbjct: 468 VPEWDGIIPQPAVLKP----KPLWTGKQIVSLVIPSGLNLVKGSDYAPLKDEGIFVAGGE 523
Query: 520 L 522
L
Sbjct: 524 L 524
[139][TOP]
>UniRef100_P17546 DNA-directed RNA polymerase II subunit RPB1-A n=1 Tax=Trypanosoma
brucei brucei RepID=RPB1A_TRYBB
Length = 1766
Score = 99.0 bits (245), Expect = 2e-19
Identities = 53/153 (34%), Positives = 88/153 (57%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R + +GD VL NR P++H+ SM+ VRVL S+ +N C +P DFDGD ++ ++P
Sbjct: 440 RHVINGDVVLFNRQPTLHRMSMMGHRVRVLNYSTF-RLNLSCTTPYNADFDGDEMNLHVP 498
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQML 366
QS+ + EL E++ + + ++ + + QDSL +Y L + L+ Y +Q + +
Sbjct: 499 QSLLTKAELIEMMMVPKNFVSPNKSAPCMGIVQDSLLGSYRLTDKDTFLDKYFVQSVALW 558
Query: 367 CDKKLTPPPSIIKAPSRNNSLWSGKQLFSMLLP 465
D P P+I+K LW+GKQ+FS++LP
Sbjct: 559 LDLWQLPIPAILKP----RPLWTGKQVFSLILP 587
[140][TOP]
>UniRef100_UPI00019270E9 PREDICTED: similar to DNA-directed RNA polymerase II subunit RPB1
isoform 2 n=1 Tax=Hydra magnipapillata
RepID=UPI00019270E9
Length = 2014
Score = 98.6 bits (244), Expect = 3e-19
Identities = 57/161 (35%), Positives = 91/161 (56%), Gaps = 2/161 (1%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R + D D V+ NR P++H+ SM+ V+VLP S+ +N +P DFDGD ++ ++P
Sbjct: 446 RHIIDNDVVVFNRQPTLHKMSMMGHRVKVLPWSTF-RLNLSVTTPYNADFDGDEMNMHVP 504
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQML 366
QS+ R E+ E++ + RQ+I QS + + + QDSL A Y + V L + L +
Sbjct: 505 QSMETRAEITEILMVPRQIITPQSNKPCMGIVQDSLCAVYKFTKRDVFLEKDVVMNLLLW 564
Query: 367 CDK--KLTPPPSIIKAPSRNNSLWSGKQLFSMLLPSNFDYS 483
K P P+I+K LW+GKQ+FS+L+P ++S
Sbjct: 565 IRKWDGKFPIPAILKP----KPLWTGKQIFSLLIPPGINHS 601
[141][TOP]
>UniRef100_UPI00019270BB PREDICTED: similar to DNA-directed RNA polymerase II subunit RPB1
isoform 1 n=1 Tax=Hydra magnipapillata
RepID=UPI00019270BB
Length = 2041
Score = 98.6 bits (244), Expect = 3e-19
Identities = 57/161 (35%), Positives = 91/161 (56%), Gaps = 2/161 (1%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R + D D V+ NR P++H+ SM+ V+VLP S+ +N +P DFDGD ++ ++P
Sbjct: 446 RHIIDNDVVVFNRQPTLHKMSMMGHRVKVLPWSTF-RLNLSVTTPYNADFDGDEMNMHVP 504
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQML 366
QS+ R E+ E++ + RQ+I QS + + + QDSL A Y + V L + L +
Sbjct: 505 QSMETRAEITEILMVPRQIITPQSNKPCMGIVQDSLCAVYKFTKRDVFLEKDVVMNLLLW 564
Query: 367 CDK--KLTPPPSIIKAPSRNNSLWSGKQLFSMLLPSNFDYS 483
K P P+I+K LW+GKQ+FS+L+P ++S
Sbjct: 565 IRKWDGKFPIPAILKP----KPLWTGKQIFSLLIPPGINHS 601
[142][TOP]
>UniRef100_UPI00005A0B1F PREDICTED: similar to polymerase (RNA) II (DNA directed)
polypeptide A isoform 10 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B1F
Length = 1840
Score = 98.6 bits (244), Expect = 3e-19
Identities = 57/159 (35%), Positives = 92/159 (57%), Gaps = 2/159 (1%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R + DGD V+ NR P++H+ SM+ VR+LP S+ +N +P DFDGD ++ ++P
Sbjct: 445 RHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTF-RLNLSVTTPYNADFDGDEMNLHLP 503
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQML 366
QS+ R E+ EL + R ++ QS R ++ + QD+LTA + V L + L L
Sbjct: 504 QSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERVFMNLLMFL 563
Query: 367 C--DKKLTPPPSIIKAPSRNNSLWSGKQLFSMLLPSNFD 477
D K+ P P+I+K LW+GKQ+FS+++P + +
Sbjct: 564 STWDGKV-PQPAILKP----RPLWTGKQIFSLIIPGHIN 597
[143][TOP]
>UniRef100_UPI00005A0B1E PREDICTED: similar to polymerase (RNA) II (DNA directed)
polypeptide A isoform 9 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B1E
Length = 1851
Score = 98.6 bits (244), Expect = 3e-19
Identities = 57/159 (35%), Positives = 92/159 (57%), Gaps = 2/159 (1%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R + DGD V+ NR P++H+ SM+ VR+LP S+ +N +P DFDGD ++ ++P
Sbjct: 445 RHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTF-RLNLSVTTPYNADFDGDEMNLHLP 503
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQML 366
QS+ R E+ EL + R ++ QS R ++ + QD+LTA + V L + L L
Sbjct: 504 QSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERVFMNLLMFL 563
Query: 367 C--DKKLTPPPSIIKAPSRNNSLWSGKQLFSMLLPSNFD 477
D K+ P P+I+K LW+GKQ+FS+++P + +
Sbjct: 564 STWDGKV-PQPAILKP----RPLWTGKQIFSLIIPGHIN 597
[144][TOP]
>UniRef100_B4E3V7 DNA-directed RNA polymerase n=1 Tax=Homo sapiens RepID=B4E3V7_HUMAN
Length = 1935
Score = 98.6 bits (244), Expect = 3e-19
Identities = 57/160 (35%), Positives = 92/160 (57%), Gaps = 3/160 (1%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R + DGD V+ NR P++ + SM+ VR+LP S+ +N +P DFDGD ++ ++P
Sbjct: 413 RHMCDGDIVIFNRQPTLRKMSMMGHRVRILPWSTF-RLNLSVTTPYNADFDGDEMNLHLP 471
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQML 366
QS+ R E+ EL + R ++ QS R ++ + QD+LTA + V L E+ L M
Sbjct: 472 QSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMF 531
Query: 367 C---DKKLTPPPSIIKAPSRNNSLWSGKQLFSMLLPSNFD 477
D K+ P P+I+K LW+GKQ+FS+++P + +
Sbjct: 532 LSTWDGKV-PQPAILKP----RPLWTGKQIFSLIIPGHIN 566
[145][TOP]
>UniRef100_A2QAT7 DNA-directed RNA polymerase n=1 Tax=Aspergillus niger CBS 513.88
RepID=A2QAT7_ASPNC
Length = 1747
Score = 98.6 bits (244), Expect = 3e-19
Identities = 55/159 (34%), Positives = 88/159 (55%), Gaps = 2/159 (1%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R + DGD +L NR PS+H+ SM+ VRV+P S+ +N +P DFDGD ++ ++P
Sbjct: 448 RHIMDGDVILFNRQPSLHKESMMGHRVRVMPYSTF-RLNLSVTTPYNADFDGDEMNLHVP 506
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQML 366
QS +R EL++L + +++ Q L+ + QD+L Y + V L ++ + M
Sbjct: 507 QSEESRAELSQLALVPMNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLTKDQVMNIMMW 566
Query: 367 CD--KKLTPPPSIIKAPSRNNSLWSGKQLFSMLLPSNFD 477
+ PPP+I+K R W+GKQ+ SM LPS +
Sbjct: 567 VPDWDGVIPPPAILKPRPR----WTGKQMISMALPSGLN 601
[146][TOP]
>UniRef100_Q5JE33 DNA-directed RNA polymerase n=1 Tax=Thermococcus kodakarensis
RepID=Q5JE33_PYRKO
Length = 906
Score = 98.6 bits (244), Expect = 3e-19
Identities = 54/155 (34%), Positives = 86/155 (55%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R L DGD VL NR PS+H+ S+++ VRV+P + +N C P DFDGD ++ ++P
Sbjct: 414 RHLEDGDVVLFNRQPSLHRMSIMAHRVRVMPYRTF-RLNLPVCPPYNADFDGDEMNLHVP 472
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQML 366
Q+ A+ E L+ + +I+ + G L++ QD ++ Y+L +G YE++Q+ M
Sbjct: 473 QTEEAQAEAKILMEVQNHIISPRYGGPLIAGIQDHISGGYLLTREGAYFTRYEVEQMLMF 532
Query: 367 CDKKLTPPPSIIKAPSRNNSLWSGKQLFSMLLPSN 471
+ P K LWSGK +FS+LLP +
Sbjct: 533 AGMDVNELPEPDKY-ENGEPLWSGKTIFSLLLPDD 566
[147][TOP]
>UniRef100_C4KIV8 DNA-directed RNA polymerase n=1 Tax=Sulfolobus islandicus M.16.4
RepID=C4KIV8_SULIK
Length = 880
Score = 98.6 bits (244), Expect = 3e-19
Identities = 58/158 (36%), Positives = 88/158 (55%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R LTDGD VL NR PS+H+ SM++ VRVL +N L C P DFDGD ++ ++P
Sbjct: 409 RHLTDGDVVLFNRQPSLHRISMMAHRVRVLK-GLTFRLNLLVCPPYNADFDGDEMNLHVP 467
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQML 366
QS A E E++ + + +I + G ++ +QD ++ AY+L LL E QQ+ +
Sbjct: 468 QSEEAIAEAKEIMLVHKNIITPRYGGPIIGAAQDYISGAYLLTVKTTLLTKEEAQQILGV 527
Query: 367 CDKKLTPPPSIIKAPSRNNSLWSGKQLFSMLLPSNFDY 480
D K+ I AP ++GKQ+ S LP +F++
Sbjct: 528 ADVKIDLGEPAILAP---REYYTGKQIVSAFLPKDFNF 562
[148][TOP]
>UniRef100_C3MY99 DNA-directed RNA polymerase n=2 Tax=Sulfolobus islandicus
RepID=C3MY99_SULIM
Length = 880
Score = 98.6 bits (244), Expect = 3e-19
Identities = 58/158 (36%), Positives = 88/158 (55%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R LTDGD VL NR PS+H+ SM++ VRVL +N L C P DFDGD ++ ++P
Sbjct: 409 RHLTDGDVVLFNRQPSLHRISMMAHRVRVLK-GLTFRLNLLVCPPYNADFDGDEMNLHVP 467
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQML 366
QS A E E++ + + +I + G ++ +QD ++ AY+L LL E QQ+ +
Sbjct: 468 QSEEAIAEAKEIMLVHKNIITPRYGGPIIGAAQDYISGAYLLTVKTTLLTKEEAQQILGV 527
Query: 367 CDKKLTPPPSIIKAPSRNNSLWSGKQLFSMLLPSNFDY 480
D K+ I AP ++GKQ+ S LP +F++
Sbjct: 528 ADVKIDLGEPAILAP---REYYTGKQIVSAFLPKDFNF 562
[149][TOP]
>UniRef100_C3MRK3 DNA-directed RNA polymerase n=3 Tax=Sulfolobus islandicus
RepID=C3MRK3_SULIL
Length = 880
Score = 98.6 bits (244), Expect = 3e-19
Identities = 58/158 (36%), Positives = 88/158 (55%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R LTDGD VL NR PS+H+ SM++ VRVL +N L C P DFDGD ++ ++P
Sbjct: 409 RHLTDGDVVLFNRQPSLHRISMMAHRVRVLK-GLTFRLNLLVCPPYNADFDGDEMNLHVP 467
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQML 366
QS A E E++ + + +I + G ++ +QD ++ AY+L LL E QQ+ +
Sbjct: 468 QSEEAIAEAKEIMLVHKNIITPRYGGPIIGAAQDYISGAYLLTVKTTLLTKEEAQQILGV 527
Query: 367 CDKKLTPPPSIIKAPSRNNSLWSGKQLFSMLLPSNFDY 480
D K+ I AP ++GKQ+ S LP +F++
Sbjct: 528 ADVKIDLGEPAILAP---REYYTGKQIVSAFLPKDFNF 562
[150][TOP]
>UniRef100_Q1L5Y4 DNA-directed RNA polymerase (Fragment) n=1 Tax=Chara australis
RepID=Q1L5Y4_9VIRI
Length = 461
Score = 98.2 bits (243), Expect = 4e-19
Identities = 58/158 (36%), Positives = 91/158 (57%), Gaps = 19/158 (12%)
Frame = +1
Query: 139 PLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLME 318
P DFDGD ++ ++P S+ A+ E +L+ L +Q+++ Q GR ++SL QDSL AA+ML
Sbjct: 1 PYNADFDGDEMNLFVPTSLEAQAEARQLLLLRKQVVSSQDGRAIVSLRQDSLLAAHMLTS 60
Query: 319 DGVLLNLYEIQQLQMLCDK-----------KLTPPPSIIKAPSR------NNSLWSGKQL 447
+ V L E+ QL M D+ ++ P P+I+K P++ ++ LW+G+Q+
Sbjct: 61 EYVFLXRQEVSQLAMCADEFGQPAAGDSRSEILPKPAILKWPAQKRQNGESSGLWTGQQV 120
Query: 448 FSMLLPSNFDYSF-PPNGVSVSDGE-LTSSFESSGWLR 555
F M L F+Y + +GV + DGE L SS WLR
Sbjct: 121 FGMSLFKGFEYDWLDEDGVLIRDGELLVXEGLSSAWLR 158
[151][TOP]
>UniRef100_Q9NJK6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Cypridopsis vidua
RepID=Q9NJK6_9CRUS
Length = 624
Score = 98.2 bits (243), Expect = 4e-19
Identities = 57/157 (36%), Positives = 89/157 (56%), Gaps = 2/157 (1%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R + DGD V+ NR P++H+ SM+ V+VLP S+ +N C SP DFDGD ++ ++P
Sbjct: 87 RHVRDGDLVIFNRQPTLHKMSMMGHRVKVLPWSTF-RMNLSCTSPYNADFDGDEMNMHVP 145
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQML 366
QS+ R E+ L R +I Q+ + ++ + QD+L A + + V L +I L M
Sbjct: 146 QSMETRAEIENLHLTPRMVITPQANKPVMGIVQDTLCAVRKMTKRDVFLEKDQIMDLLMH 205
Query: 367 CDK--KLTPPPSIIKAPSRNNSLWSGKQLFSMLLPSN 471
+ P P+I+K LW+GKQLFS+++P N
Sbjct: 206 LPRWDGRMPVPAILKP----KPLWTGKQLFSLIIPGN 238
[152][TOP]
>UniRef100_Q8MX30 DNA-directed RNA polymerase (Fragment) n=1 Tax=Naegleria gruberi
RepID=Q8MX30_NAEGR
Length = 1590
Score = 98.2 bits (243), Expect = 4e-19
Identities = 63/160 (39%), Positives = 91/160 (56%), Gaps = 7/160 (4%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R L DGD +L NR PS+H+ SM+ ++V+P S+ +N +P DFDGD ++ ++P
Sbjct: 367 RHLQDGDVILFNRQPSLHKMSMMGHRIKVMPYSTF-RMNLSVTTPYNADFDGDEMNLHVP 425
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQML 366
QS+ + EL EL + R +I QS R +++L QD+L AA L V + + L M
Sbjct: 426 QSLQTKAELLELTMVPRNIITPQSNRPVIALVQDTLLAASKLTRRDVFI----AKDLMMN 481
Query: 367 C-------DKKLTPPPSIIKAPSRNNSLWSGKQLFSMLLP 465
C D KL P P+I+K LW+GKQLF+ LLP
Sbjct: 482 CLMHLIDFDGKL-PVPAILKP----KPLWTGKQLFTFLLP 516
[153][TOP]
>UniRef100_B4NDK9 DNA-directed RNA polymerase n=1 Tax=Drosophila willistoni
RepID=B4NDK9_DROWI
Length = 1890
Score = 98.2 bits (243), Expect = 4e-19
Identities = 56/158 (35%), Positives = 91/158 (57%), Gaps = 3/158 (1%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R L D D V+ NR P++H+ SM+ V+VLP S+ +N C SP DFDGD ++ ++P
Sbjct: 440 RHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWSTF-RMNLSCTSPYNADFDGDEMNLHVP 498
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQML 366
QS+ R E+ + RQ+I Q+ + ++ + QD+LTA + + V + ++ L M
Sbjct: 499 QSMETRAEVENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFITREQMMNLLMF 558
Query: 367 C---DKKLTPPPSIIKAPSRNNSLWSGKQLFSMLLPSN 471
D K+ P P I+K +W+GKQ+FS+++P N
Sbjct: 559 LPTWDGKM-PQPCILKP----RPMWTGKQIFSLIIPGN 591
[154][TOP]
>UniRef100_Q0D054 DNA-directed RNA polymerase n=1 Tax=Aspergillus terreus NIH2624
RepID=Q0D054_ASPTN
Length = 1742
Score = 98.2 bits (243), Expect = 4e-19
Identities = 54/159 (33%), Positives = 88/159 (55%), Gaps = 2/159 (1%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R + DGD +L NR PS+H+ SM+ VRV+P S+ +N +P DFDGD ++ ++P
Sbjct: 450 RHIMDGDVILFNRQPSLHKESMMGHRVRVMPYSTF-RLNLSVTTPYNADFDGDEMNLHVP 508
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQML 366
QS +R EL++L + +++ Q L+ + QD+L Y + + L ++ + M
Sbjct: 509 QSEESRAELSQLALVPMNIVSPQRNGPLMGIVQDTLCGIYKICRRDIFLTKDQVMNMMMW 568
Query: 367 CD--KKLTPPPSIIKAPSRNNSLWSGKQLFSMLLPSNFD 477
+ PPP+I+K R W+GKQ+ SM LPS +
Sbjct: 569 VPDWDGVIPPPAILKPRPR----WTGKQMISMALPSGLN 603
[155][TOP]
>UniRef100_C5FCL2 DNA-directed RNA polymerase n=1 Tax=Microsporum canis CBS 113480
RepID=C5FCL2_NANOT
Length = 1748
Score = 98.2 bits (243), Expect = 4e-19
Identities = 57/155 (36%), Positives = 87/155 (56%), Gaps = 2/155 (1%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R L DGD +L NR PS+H+ SM+S VRV+P S+ +N +P DFDGD ++ ++P
Sbjct: 451 RHLMDGDFILFNRQPSLHKESMMSHRVRVMPYSTF-RLNLSVTTPYNADFDGDEMNLHVP 509
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQML 366
QS AR ELN+L + +++ Q L+ + QD+L Y + V L ++ + +
Sbjct: 510 QSEEARAELNQLCLVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLTKEQVMNILLW 569
Query: 367 CD--KKLTPPPSIIKAPSRNNSLWSGKQLFSMLLP 465
+ P P+I+K R WSGKQ+ SM+LP
Sbjct: 570 VPDWDGVLPQPAILKPRPR----WSGKQMISMVLP 600
[156][TOP]
>UniRef100_A7J592 DNA-directed RNA polymerase (Fragment) n=1 Tax=Pyxine subcinerea
RepID=A7J592_9LECA
Length = 1015
Score = 98.2 bits (243), Expect = 4e-19
Identities = 58/183 (31%), Positives = 99/183 (54%), Gaps = 11/183 (6%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R + DGD ++ NR PS+H+ SM+ VRV+P S+ +N SP DFDGD ++ ++P
Sbjct: 368 RHIVDGDYIIFNRQPSLHKESMMGHRVRVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVP 426
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQML 366
QS R E+N+L + +++ Q L+ + QD+L Y + V LN ++ + +
Sbjct: 427 QSEETRAEVNQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLNQDQVMNILLW 486
Query: 367 CD--KKLTPPPSIIKAPSRNNSLWSGKQLFSMLLPSNF------DYSFPP---NGVSVSD 513
+ P P+I+K + +W+GKQ+ S+++P D F P +G+ +S+
Sbjct: 487 VPDWDGIIPQPAILKP----SPMWTGKQIISLVIPPGLNLGRSGDDGFSPIDDSGLLISN 542
Query: 514 GEL 522
GEL
Sbjct: 543 GEL 545
[157][TOP]
>UniRef100_A1CNZ4 DNA-directed RNA polymerase n=1 Tax=Aspergillus clavatus
RepID=A1CNZ4_ASPCL
Length = 1765
Score = 98.2 bits (243), Expect = 4e-19
Identities = 54/159 (33%), Positives = 89/159 (55%), Gaps = 2/159 (1%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R L DGD +L NR PS+H+ SM++ VRV+P S+ +N +P DFDGD ++ ++P
Sbjct: 451 RHLMDGDVILFNRQPSLHKESMMAHRVRVMPYSTF-RMNLSVTTPYNADFDGDEMNLHVP 509
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQML 366
QS +R EL++L + +++ Q L+ + QD+L Y + + L ++ + +
Sbjct: 510 QSEESRAELSQLALVPMNIVSPQRNGPLMGIVQDTLCGIYKICRRDIFLTKEQVMNIMLW 569
Query: 367 CD--KKLTPPPSIIKAPSRNNSLWSGKQLFSMLLPSNFD 477
+ PPP+I+K R W+GKQ+ SM LPS +
Sbjct: 570 VPDWDGVIPPPAILKPRPR----WTGKQMISMALPSGLN 604
[158][TOP]
>UniRef100_B8YB53 DNA-directed RNA polymerase n=1 Tax=Sulfolobus shibatae B12
RepID=B8YB53_SULSH
Length = 880
Score = 98.2 bits (243), Expect = 4e-19
Identities = 58/158 (36%), Positives = 88/158 (55%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R LTDGD VL NR PS+H+ SM++ VRVL +N L C P DFDGD ++ ++P
Sbjct: 409 RHLTDGDVVLFNRQPSLHRISMMAHRVRVLK-GLTFRLNLLVCPPYNADFDGDEMNLHVP 467
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQML 366
QS A E E++ + + +I + G ++ +QD ++ AY+L LL E QQ+ +
Sbjct: 468 QSEEAIAEAKEIMLVHKNIITPRYGGPIIGAAQDYISGAYLLTVKTTLLTKEEAQQILGV 527
Query: 367 CDKKLTPPPSIIKAPSRNNSLWSGKQLFSMLLPSNFDY 480
D K+ I AP ++GKQ+ S LP +F++
Sbjct: 528 ADVKIDLGEPAILAP---REYYTGKQVVSAFLPKDFNF 562
[159][TOP]
>UniRef100_Q95W43 DNA-directed RNA polymerase n=1 Tax=Trypanosoma cruzi
RepID=Q95W43_TRYCR
Length = 1731
Score = 97.8 bits (242), Expect = 5e-19
Identities = 51/153 (33%), Positives = 88/153 (57%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R + +GD VL NR P++H+ SM+ VRVL ++ +N C +P DFDGD ++ ++P
Sbjct: 423 RHVINGDVVLFNRQPTLHRMSMMGHRVRVLNYNTF-RLNLSCTTPYNADFDGDEMNLHVP 481
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQML 366
QS+ + EL E++ + + ++ + + QDSL +Y L + L+ Y +Q + +
Sbjct: 482 QSLLTKAELIEMMMVPKNFVSPNKSAPCMGIVQDSLLGSYRLTDKDTFLDKYFVQSVALW 541
Query: 367 CDKKLTPPPSIIKAPSRNNSLWSGKQLFSMLLP 465
D P P+++K LW+GKQ+FS++LP
Sbjct: 542 LDLWQLPVPAVLKP----RPLWTGKQVFSLILP 570
[160][TOP]
>UniRef100_Q8ISB0 DNA-directed RNA polymerase n=1 Tax=Trypanosoma cruzi
RepID=Q8ISB0_TRYCR
Length = 1731
Score = 97.8 bits (242), Expect = 5e-19
Identities = 51/153 (33%), Positives = 88/153 (57%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R + +GD VL NR P++H+ SM+ VRVL ++ +N C +P DFDGD ++ ++P
Sbjct: 423 RHVINGDVVLFNRQPTLHRMSMMGHRVRVLNYNTF-RLNLSCTTPYNADFDGDEMNLHVP 481
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQML 366
QS+ + EL E++ + + ++ + + QDSL +Y L + L+ Y +Q + +
Sbjct: 482 QSLLTKAELIEMMMVPKNFVSPNKSAPCMGIVQDSLLGSYRLTDKDTFLDKYFVQSVALW 541
Query: 367 CDKKLTPPPSIIKAPSRNNSLWSGKQLFSMLLP 465
D P P+++K LW+GKQ+FS++LP
Sbjct: 542 LDLWQLPVPAVLKP----RPLWTGKQVFSLILP 570
[161][TOP]
>UniRef100_Q584K3 DNA-directed RNA polymerase n=1 Tax=Trypanosoma brucei
RepID=Q584K3_9TRYP
Length = 1765
Score = 97.8 bits (242), Expect = 5e-19
Identities = 52/153 (33%), Positives = 88/153 (57%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R + +GD VL NR P++H+ SM+ VRVL ++ +N C +P DFDGD ++ ++P
Sbjct: 439 RHVINGDVVLFNRQPTLHRMSMMGHRVRVLNYNTF-RLNLSCTTPYNADFDGDEMNLHVP 497
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQML 366
QS+ + EL E++ + + ++ + + QDSL +Y L + L+ Y +Q + +
Sbjct: 498 QSLLTKAELIEMMMVPKNFVSPNKSAPCMGIVQDSLLGSYRLTDKDTFLDKYFVQSVALW 557
Query: 367 CDKKLTPPPSIIKAPSRNNSLWSGKQLFSMLLP 465
D P P+I+K LW+GKQ+FS++LP
Sbjct: 558 LDLWQLPIPAILKP----RPLWTGKQVFSLILP 586
[162][TOP]
>UniRef100_Q57YU2 DNA-directed RNA polymerase n=1 Tax=Trypanosoma brucei
RepID=Q57YU2_9TRYP
Length = 1765
Score = 97.8 bits (242), Expect = 5e-19
Identities = 52/153 (33%), Positives = 88/153 (57%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R + +GD VL NR P++H+ SM+ VRVL ++ +N C +P DFDGD ++ ++P
Sbjct: 439 RHVINGDVVLFNRQPTLHRMSMMGHRVRVLNYNTF-RLNLSCTTPYNADFDGDEMNLHVP 497
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQML 366
QS+ + EL E++ + + ++ + + QDSL +Y L + L+ Y +Q + +
Sbjct: 498 QSLLTKAELIEMMMVPKNFVSPNKSAPCMGIVQDSLLGSYRLTDKDTFLDKYFVQSVALW 557
Query: 367 CDKKLTPPPSIIKAPSRNNSLWSGKQLFSMLLP 465
D P P+I+K LW+GKQ+FS++LP
Sbjct: 558 LDLWQLPIPAILKP----RPLWTGKQVFSLILP 586
[163][TOP]
>UniRef100_Q4DDX5 DNA-directed RNA polymerase n=1 Tax=Trypanosoma cruzi
RepID=Q4DDX5_TRYCR
Length = 1731
Score = 97.8 bits (242), Expect = 5e-19
Identities = 51/153 (33%), Positives = 88/153 (57%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R + +GD VL NR P++H+ SM+ VRVL ++ +N C +P DFDGD ++ ++P
Sbjct: 423 RHVINGDVVLFNRQPTLHRMSMMGHRVRVLNYNTF-RLNLSCTTPYNADFDGDEMNLHVP 481
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQML 366
QS+ + EL E++ + + ++ + + QDSL +Y L + L+ Y +Q + +
Sbjct: 482 QSLLTKAELIEMMMVPKNFVSPNKSAPCMGIVQDSLLGSYRLTDKDTFLDKYFVQSVALW 541
Query: 367 CDKKLTPPPSIIKAPSRNNSLWSGKQLFSMLLP 465
D P P+++K LW+GKQ+FS++LP
Sbjct: 542 LDLWQLPVPAVLKP----RPLWTGKQVFSLILP 570
[164][TOP]
>UniRef100_Q26794 DNA-directed RNA polymerase n=1 Tax=Trypanosoma brucei
RepID=Q26794_9TRYP
Length = 1765
Score = 97.8 bits (242), Expect = 5e-19
Identities = 52/153 (33%), Positives = 88/153 (57%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R + +GD VL NR P++H+ SM+ VRVL ++ +N C +P DFDGD ++ ++P
Sbjct: 439 RHVINGDVVLFNRQPTLHRMSMMGHRVRVLNYNTF-RLNLSCTTPYNADFDGDEMNLHVP 497
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQML 366
QS+ + EL E++ + + ++ + + QDSL +Y L + L+ Y +Q + +
Sbjct: 498 QSLLTKAELIEMMMVPKNFVSPNKSAPCMGIVQDSLLGSYRLTDKDTFLDKYFVQSVALW 557
Query: 367 CDKKLTPPPSIIKAPSRNNSLWSGKQLFSMLLP 465
D P P+I+K LW+GKQ+FS++LP
Sbjct: 558 LDLWQLPIPAILKP----RPLWTGKQVFSLILP 586
[165][TOP]
>UniRef100_Q25312 DNA-directed RNA polymerase n=1 Tax=Leishmania major
RepID=Q25312_LEIMA
Length = 1663
Score = 97.8 bits (242), Expect = 5e-19
Identities = 53/153 (34%), Positives = 87/153 (56%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R + DGD VL NR P++H+ SM+ VRVL ++ +N C +P DFDGD ++ ++P
Sbjct: 417 RHVIDGDVVLFNRQPTLHRMSMMGHRVRVLNYNTF-RLNLSCTTPYNADFDGDEMNLHVP 475
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQML 366
QS+ + EL E++ + + ++ + + QDS+ +Y L E L+ Y I + +
Sbjct: 476 QSLLTKAELIEMMMVPKNFVSPNKSAPCMGIVQDSVLGSYKLTEKDTFLDKYFIAERPLW 535
Query: 367 CDKKLTPPPSIIKAPSRNNSLWSGKQLFSMLLP 465
D P P+I+K LW+GKQ+FS++LP
Sbjct: 536 LDLWQLPIPTILKP----RPLWTGKQIFSLILP 564
[166][TOP]
>UniRef100_C9ZMF2 RNA polymerase IIA largest subunit, putative n=3 Tax=Trypanosoma
brucei RepID=C9ZMF2_TRYBG
Length = 1765
Score = 97.8 bits (242), Expect = 5e-19
Identities = 52/153 (33%), Positives = 88/153 (57%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R + +GD VL NR P++H+ SM+ VRVL ++ +N C +P DFDGD ++ ++P
Sbjct: 439 RHVINGDVVLFNRQPTLHRMSMMGHRVRVLNYNTF-RLNLSCTTPYNADFDGDEMNLHVP 497
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQML 366
QS+ + EL E++ + + ++ + + QDSL +Y L + L+ Y +Q + +
Sbjct: 498 QSLLTKAELIEMMMVPKNFVSPNKSAPCMGIVQDSLLGSYRLTDKDTFLDKYFVQSVALW 557
Query: 367 CDKKLTPPPSIIKAPSRNNSLWSGKQLFSMLLP 465
D P P+I+K LW+GKQ+FS++LP
Sbjct: 558 LDLWQLPIPAILKP----RPLWTGKQVFSLILP 586
[167][TOP]
>UniRef100_Q5KFV9 DNA-directed RNA polymerase n=1 Tax=Filobasidiella neoformans
RepID=Q5KFV9_CRYNE
Length = 1466
Score = 97.8 bits (242), Expect = 5e-19
Identities = 56/160 (35%), Positives = 92/160 (57%), Gaps = 3/160 (1%)
Frame = +1
Query: 1 LYRPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGY 180
++R + DGD VL NR PS+H+ S++ VRV P + +N C+P DFDGD ++ +
Sbjct: 461 VHRHVRDGDIVLFNRQPSLHKLSIMCHRVRVRPWRTF-RLNECVCNPYNADFDGDEMNLH 519
Query: 181 IPQSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQ 360
+PQ+ AR E EL+++ + L+ ++G +++ QD +TAAY+L + + Q+
Sbjct: 520 VPQTEEARTEALELMSVKKNLVTPRNGEPIIAAIQDFITAAYLLSRRDRFYDRQQFTQIV 579
Query: 361 MLCDK---KLTPPPSIIKAPSRNNSLWSGKQLFSMLLPSN 471
D K+ PP I P R LW+GKQ+F++L+ N
Sbjct: 580 SYLDDANLKIEMPPPTIWKPVR---LWTGKQIFNLLMRPN 616
[168][TOP]
>UniRef100_Q55QA7 DNA-directed RNA polymerase n=1 Tax=Filobasidiella neoformans
RepID=Q55QA7_CRYNE
Length = 1466
Score = 97.8 bits (242), Expect = 5e-19
Identities = 56/160 (35%), Positives = 92/160 (57%), Gaps = 3/160 (1%)
Frame = +1
Query: 1 LYRPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGY 180
++R + DGD VL NR PS+H+ S++ VRV P + +N C+P DFDGD ++ +
Sbjct: 461 VHRHVRDGDIVLFNRQPSLHKLSIMCHRVRVRPWRTF-RLNECVCNPYNADFDGDEMNLH 519
Query: 181 IPQSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQ 360
+PQ+ AR E EL+++ + L+ ++G +++ QD +TAAY+L + + Q+
Sbjct: 520 VPQTEEARTEALELMSVKKNLVTPRNGEPIIAAIQDFITAAYLLSRRDRFYDRQQFTQIV 579
Query: 361 MLCDK---KLTPPPSIIKAPSRNNSLWSGKQLFSMLLPSN 471
D K+ PP I P R LW+GKQ+F++L+ N
Sbjct: 580 SYLDDANLKIEMPPPTIWKPVR---LWTGKQIFNLLMRPN 616
[169][TOP]
>UniRef100_C5DY31 DNA-directed RNA polymerase n=1 Tax=Zygosaccharomyces rouxii CBS
732 RepID=C5DY31_ZYGRC
Length = 1458
Score = 97.8 bits (242), Expect = 5e-19
Identities = 57/159 (35%), Positives = 91/159 (57%), Gaps = 4/159 (2%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R L DGD VL NR PS+H+ S++S ++ P + +N C+P DFDGD ++ ++P
Sbjct: 462 RHLEDGDVVLFNRQPSLHRLSILSHYAKIRPWRTF-RLNECVCTPYNADFDGDEMNLHVP 520
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQ-LQM 363
QS AR E L+ + L+ +SG +++ +QD +T +Y++ + Y++ Q L M
Sbjct: 521 QSEEARAEAINLMGVKSNLLTPKSGEPIIAATQDFITGSYLISHKDSFFDKYDMTQLLSM 580
Query: 364 LCDKKL---TPPPSIIKAPSRNNSLWSGKQLFSMLLPSN 471
+ D L PPP+I K LW+GKQ+FS+L+ N
Sbjct: 581 MSDGALQFDIPPPTIWKP----CYLWTGKQIFSLLIRPN 615
[170][TOP]
>UniRef100_C4JY44 DNA-directed RNA polymerase n=1 Tax=Uncinocarpus reesii 1704
RepID=C4JY44_UNCRE
Length = 1747
Score = 97.8 bits (242), Expect = 5e-19
Identities = 55/159 (34%), Positives = 90/159 (56%), Gaps = 2/159 (1%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R L DGD +L NR PS+H+ SM++ VRV+P S+ +N +P DFDGD ++ ++P
Sbjct: 404 RHLMDGDVILFNRQPSLHKESMMAHRVRVMPYSTF-RLNLSVTTPYNADFDGDEMNLHVP 462
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQML 366
QS AR EL++L + +++ Q L+ + QD+L Y + V L ++ + +
Sbjct: 463 QSEEARAELSQLCLVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLTKEQVMNIMLW 522
Query: 367 CDK--KLTPPPSIIKAPSRNNSLWSGKQLFSMLLPSNFD 477
+ + P P+I+K R W+GKQ+ SM+LPS +
Sbjct: 523 VPEWDGVLPQPAILKPRPR----WTGKQIISMVLPSGLN 557
[171][TOP]
>UniRef100_A1D1U9 DNA-directed RNA polymerase n=1 Tax=Neosartorya fischeri NRRL 181
RepID=A1D1U9_NEOFI
Length = 1750
Score = 97.8 bits (242), Expect = 5e-19
Identities = 55/159 (34%), Positives = 88/159 (55%), Gaps = 2/159 (1%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R L DGD +L NR PS+H+ SM+ VRV+P S+ +N +P DFDGD ++ ++P
Sbjct: 449 RHLMDGDIILFNRQPSLHKESMMGHRVRVMPYSTF-RLNLSVTTPYNADFDGDEMNLHVP 507
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQML 366
QS +R EL +L + +++ Q L+ + QD+L Y + V L+ ++ + +
Sbjct: 508 QSEESRAELKQLALVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLSKEQVMNIMLW 567
Query: 367 CD--KKLTPPPSIIKAPSRNNSLWSGKQLFSMLLPSNFD 477
+ PPP+I+K R W+GKQ+ SM LPS +
Sbjct: 568 VPDWDGVIPPPAILKPRPR----WTGKQMISMALPSGLN 602
[172][TOP]
>UniRef100_P16356 DNA-directed RNA polymerase II subunit RPB1 n=1 Tax=Caenorhabditis
elegans RepID=RPB1_CAEEL
Length = 1852
Score = 97.8 bits (242), Expect = 5e-19
Identities = 56/158 (35%), Positives = 94/158 (59%), Gaps = 3/158 (1%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R + DGD ++ NR P++H+ SM+ V++LP S+ +N SP DFDGD ++ ++P
Sbjct: 438 RHMKDGDIIVFNRQPTLHKMSMMGHRVKILPWSTF-RMNLSVTSPYNADFDGDEMNLHLP 496
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQML 366
QS+ R E+ E+ + RQLI Q+ + ++ + QD+L A M+ + V ++ + L M
Sbjct: 497 QSLETRAEIEEIAMVPRQLITPQANKPVMGIVQDTLCAVRMMTKRDVFIDWPFMMDLLMY 556
Query: 367 C---DKKLTPPPSIIKAPSRNNSLWSGKQLFSMLLPSN 471
D K+ P P+I+K LW+GKQ+FS+++P N
Sbjct: 557 LPTWDGKV-PQPAILKP----KPLWTGKQVFSLIIPGN 589
[173][TOP]
>UniRef100_P17545 DNA-directed RNA polymerase II subunit RPB1-B n=1 Tax=Trypanosoma
brucei brucei RepID=RPB1B_TRYBB
Length = 1766
Score = 97.8 bits (242), Expect = 5e-19
Identities = 52/153 (33%), Positives = 88/153 (57%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R + +GD VL NR P++H+ SM+ VRVL ++ +N C +P DFDGD ++ ++P
Sbjct: 440 RHVINGDVVLFNRQPTLHRMSMMGHRVRVLNYNTF-RLNLSCTTPYNADFDGDEMNLHVP 498
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQML 366
QS+ + EL E++ + + ++ + + QDSL +Y L + L+ Y +Q + +
Sbjct: 499 QSLLTKAELIEMMMVPKNFVSPNKSAPCMGIVQDSLLGSYRLTDKDTFLDKYFVQSVALW 558
Query: 367 CDKKLTPPPSIIKAPSRNNSLWSGKQLFSMLLP 465
D P P+I+K LW+GKQ+FS++LP
Sbjct: 559 LDLWQLPIPAILKP----RPLWTGKQVFSLILP 587
[174][TOP]
>UniRef100_UPI000186501C hypothetical protein BRAFLDRAFT_115025 n=1 Tax=Branchiostoma
floridae RepID=UPI000186501C
Length = 1956
Score = 97.4 bits (241), Expect = 7e-19
Identities = 57/158 (36%), Positives = 92/158 (58%), Gaps = 3/158 (1%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R + D D V+ NR P++H+ SM+ V++LP S+ +N +P DFDGD ++ ++P
Sbjct: 444 RHIRDDDIVIFNRQPTLHKMSMMGHRVKILPWSTF-RLNLSVTTPYNADFDGDEMNMHVP 502
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQM- 363
QSV R E+ EL + R +I QS R ++ + QD+LTA + V ++ ++ L M
Sbjct: 503 QSVETRAEIMELAMVPRMIITPQSNRPVMGIVQDTLTAVRKFTKRDVFIDRNDMMNLLMW 562
Query: 364 --LCDKKLTPPPSIIKAPSRNNSLWSGKQLFSMLLPSN 471
D K+ P P+I+K LW+GKQLFS+++P +
Sbjct: 563 LPTWDGKM-PQPAILKP----KPLWTGKQLFSLIIPGH 595
[175][TOP]
>UniRef100_Q6JTZ3 DNA-directed RNA polymerase (Fragment) n=1 Tax=Scutigerella sp.
Scu3 RepID=Q6JTZ3_9MYRI
Length = 624
Score = 97.4 bits (241), Expect = 7e-19
Identities = 56/157 (35%), Positives = 89/157 (56%), Gaps = 2/157 (1%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R + DGD ++ NR P++H+ SM+ RVLP S+ +N +P DFDGD ++ ++P
Sbjct: 87 RHVRDGDVIVFNRQPTLHKMSMMGHHXRVLPWSTF-RMNLSVTTPYNADFDGDEMNLHVP 145
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQML 366
QS R E+ EL + RQ+I QS R ++ + QD+LTA + + V L+ ++ L M
Sbjct: 146 QSNETRAEVEELAIVPRQIITPQSNRPVMGIVQDTLTAVRKMTKRDVFLDKDQMMNLLMF 205
Query: 367 CD--KKLTPPPSIIKAPSRNNSLWSGKQLFSMLLPSN 471
P P I+K + W+GKQ+FS+++P N
Sbjct: 206 LPTWNGKVPQPCILKPKPQ----WTGKQIFSLIIPGN 238
[176][TOP]
>UniRef100_C3ZES3 DNA-directed RNA polymerase n=1 Tax=Branchiostoma floridae
RepID=C3ZES3_BRAFL
Length = 1934
Score = 97.4 bits (241), Expect = 7e-19
Identities = 57/158 (36%), Positives = 92/158 (58%), Gaps = 3/158 (1%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R + D D V+ NR P++H+ SM+ V++LP S+ +N +P DFDGD ++ ++P
Sbjct: 444 RHIRDDDIVIFNRQPTLHKMSMMGHRVKILPWSTF-RLNLSVTTPYNADFDGDEMNMHVP 502
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQM- 363
QSV R E+ EL + R +I QS R ++ + QD+LTA + V ++ ++ L M
Sbjct: 503 QSVETRAEIMELAMVPRMIITPQSNRPVMGIVQDTLTAVRKFTKRDVFIDRNDMMNLLMW 562
Query: 364 --LCDKKLTPPPSIIKAPSRNNSLWSGKQLFSMLLPSN 471
D K+ P P+I+K LW+GKQLFS+++P +
Sbjct: 563 LPTWDGKM-PQPAILKP----KPLWTGKQLFSLIIPGH 595
[177][TOP]
>UniRef100_Q2HDK0 DNA-directed RNA polymerase n=1 Tax=Chaetomium globosum
RepID=Q2HDK0_CHAGB
Length = 1756
Score = 97.4 bits (241), Expect = 7e-19
Identities = 59/185 (31%), Positives = 95/185 (51%), Gaps = 13/185 (7%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R L DGD ++ NR PS+H+ SM+ VRV+P S+ +N SP DFDGD ++ ++P
Sbjct: 447 RHLLDGDYIIFNRQPSLHKESMMGHRVRVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVP 505
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQML 366
Q+ R E+ EL + +++ Q L+ + QD+L Y L V L E+ + +
Sbjct: 506 QTEETRAEVKELCMVPLNIVSPQRNGPLMGIVQDTLAGVYKLCRRDVFLTKEEVMNIMLW 565
Query: 367 CD--KKLTPPPSIIKAPSRNNSLWSGKQLFSMLLPS-----------NFDYSFPPNGVSV 507
+ P P+I K R W+GKQ+ SM++P+ + D+ F +G+ +
Sbjct: 566 VPDWDGIIPLPAIFKPRPR----WTGKQIISMVIPNIINIHMPSDQPDRDHPFKDDGLLI 621
Query: 508 SDGEL 522
GEL
Sbjct: 622 QQGEL 626
[178][TOP]
>UniRef100_C5JRK1 DNA-directed RNA polymerase n=1 Tax=Ajellomyces dermatitidis
SLH14081 RepID=C5JRK1_AJEDS
Length = 1456
Score = 97.4 bits (241), Expect = 7e-19
Identities = 59/162 (36%), Positives = 88/162 (54%), Gaps = 7/162 (4%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R + DGD VL NR PS+H+ S++S +V P +N C+P DFDGD ++ ++P
Sbjct: 466 RHIEDGDIVLFNRQPSLHKLSILSHFAKVRP-HRTFRLNECVCNPYNADFDGDEMNLHVP 524
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQML 366
Q+ AR E EL+ + L ++G ++S QD +TAAYML V Y+ + +
Sbjct: 525 QTEEARAEAMELMGVKNNLATPKNGEPIISAIQDFITAAYMLSSKDV---FYDRKAFTHI 581
Query: 367 CDKKL-------TPPPSIIKAPSRNNSLWSGKQLFSMLLPSN 471
C L PPPS+IK LW+GKQ+F++L+ N
Sbjct: 582 CLYMLQSDTRFDLPPPSVIKP----QMLWTGKQIFNVLMRPN 619
[179][TOP]
>UniRef100_C5GRI8 DNA-directed RNA polymerase n=1 Tax=Ajellomyces dermatitidis ER-3
RepID=C5GRI8_AJEDR
Length = 1456
Score = 97.4 bits (241), Expect = 7e-19
Identities = 59/162 (36%), Positives = 88/162 (54%), Gaps = 7/162 (4%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R + DGD VL NR PS+H+ S++S +V P +N C+P DFDGD ++ ++P
Sbjct: 466 RHIEDGDIVLFNRQPSLHKLSILSHFAKVRP-HRTFRLNECVCNPYNADFDGDEMNLHVP 524
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQML 366
Q+ AR E EL+ + L ++G ++S QD +TAAYML V Y+ + +
Sbjct: 525 QTEEARAEAMELMGVKNNLATPKNGEPIISAIQDFITAAYMLSSKDV---FYDRKAFTHI 581
Query: 367 CDKKL-------TPPPSIIKAPSRNNSLWSGKQLFSMLLPSN 471
C L PPPS+IK LW+GKQ+F++L+ N
Sbjct: 582 CLYMLQSDTRFDLPPPSVIKP----QMLWTGKQIFNVLMRPN 619
[180][TOP]
>UniRef100_C5DJG5 DNA-directed RNA polymerase n=1 Tax=Lachancea thermotolerans CBS
6340 RepID=C5DJG5_LACTC
Length = 1460
Score = 97.4 bits (241), Expect = 7e-19
Identities = 56/159 (35%), Positives = 91/159 (57%), Gaps = 4/159 (2%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R L DGD VL NR PS+H+ S++S ++ P + +N C+P DFDGD ++ ++P
Sbjct: 463 RHLEDGDVVLFNRQPSLHRLSILSHYAKIRPWRTF-RLNECVCTPYNADFDGDEMNLHVP 521
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLM-EDGVLLNLYEIQQLQM 363
Q+ AR E L+ + L+ +SG +++ +QD +T +Y++ +D +Q L M
Sbjct: 522 QTEEARAEAINLMGVKNNLLTPKSGEPIIAATQDFITGSYLISHKDSFFSRAEFVQLLSM 581
Query: 364 LCDKKL---TPPPSIIKAPSRNNSLWSGKQLFSMLLPSN 471
+ D L PPPSI+K +W+GKQ+FS+L+ N
Sbjct: 582 MSDGNLQFDIPPPSIMKP----YYMWTGKQVFSLLIRPN 616
[181][TOP]
>UniRef100_B0XMU6 DNA-directed RNA polymerase n=2 Tax=Aspergillus fumigatus
RepID=B0XMU6_ASPFC
Length = 1750
Score = 97.4 bits (241), Expect = 7e-19
Identities = 55/159 (34%), Positives = 87/159 (54%), Gaps = 2/159 (1%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R L DGD +L NR PS+H+ SM+ VRV+P S+ +N +P DFDGD ++ ++P
Sbjct: 449 RHLMDGDIILFNRQPSLHKESMMGHRVRVMPYSTF-RLNLSVTTPYNADFDGDEMNLHVP 507
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQML 366
QS +R EL +L + +++ Q L+ + QD+L Y + V L ++ + +
Sbjct: 508 QSEESRAELKQLALVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLTKEQVMNIMLW 567
Query: 367 CD--KKLTPPPSIIKAPSRNNSLWSGKQLFSMLLPSNFD 477
+ PPP+I+K R W+GKQ+ SM LPS +
Sbjct: 568 VPDWDGVIPPPAILKPRPR----WTGKQMISMALPSGLN 602
[182][TOP]
>UniRef100_A7J588 DNA-directed RNA polymerase (Fragment) n=1 Tax=Heterodermia
vulgaris RepID=A7J588_9LECA
Length = 996
Score = 97.4 bits (241), Expect = 7e-19
Identities = 57/181 (31%), Positives = 97/181 (53%), Gaps = 9/181 (4%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R + DGD ++ NR P H+ SM+ VRV+P S+ +N SP DFDGD ++ ++P
Sbjct: 351 RHIVDGDXIIFNRQPYXHKESMMGHRVRVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVP 409
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQML 366
QS R E+N+L + +++ Q L+ + QD+L Y + V LN ++ + +
Sbjct: 410 QSEETRAEVNQLCMVPLNIVSPQRNSPLMGIVQDTLCGIYKICRRDVFLNQEQVMNILLW 469
Query: 367 CDK--KLTPPPSIIKAPSRNNSLWSGKQLFSMLLPSNF------DYS-FPPNGVSVSDGE 519
+ + P P+++K LW+GKQ+ S+++P+ DY+ +G+ VS GE
Sbjct: 470 VPEWDGIIPQPAVLKP----TPLWTGKQIVSLVIPAGLNLVKGSDYAPLKDDGIFVSSGE 525
Query: 520 L 522
L
Sbjct: 526 L 526
[183][TOP]
>UniRef100_A1YIB3 DNA-directed RNA polymerase (Fragment) n=1 Tax=Capniomyces
stellatus RepID=A1YIB3_9FUNG
Length = 1024
Score = 97.4 bits (241), Expect = 7e-19
Identities = 57/163 (34%), Positives = 92/163 (56%), Gaps = 3/163 (1%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R L D D V+ NR PS+H+ SM+ V+V+P S+ +N SP DFDGD ++ ++P
Sbjct: 373 RNLMDDDVVIFNRQPSLHKMSMMGHRVKVMPYSTF-RLNLSVTSPYNADFDGDEMNLHLP 431
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQML 366
QS R E+ EL + +Q+++ Q+ + ++ + QD+L A M + L+ L + L +
Sbjct: 432 QSEETRAEIRELCMVPKQIVSPQANKPVMGIVQDTLCALLMFTKRDTLMRLDMVMSLLLK 491
Query: 367 CD--KKLTPPPSIIKAPSRNNSLWSGKQLFSMLLPSNFD-YSF 486
L P P I+K LWSGKQ+FS+++P + Y+F
Sbjct: 492 VPGWDGLIPTPCILKP----QPLWSGKQIFSLIIPKGINCYTF 530
[184][TOP]
>UniRef100_P35074 DNA-directed RNA polymerase II subunit RPB1 n=1 Tax=Caenorhabditis
briggsae RepID=RPB1_CAEBR
Length = 1853
Score = 97.4 bits (241), Expect = 7e-19
Identities = 55/158 (34%), Positives = 94/158 (59%), Gaps = 3/158 (1%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R + DGD ++ NR P++H+ SM+ V++LP S+ +N SP DFDGD ++ ++P
Sbjct: 442 RHMKDGDIIVFNRQPTLHKMSMMGHRVKILPWSTF-RMNLSVTSPYNADFDGDEMNLHLP 500
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQML 366
QS+ R E+ E+ + RQLI Q+ + ++ + QD+L A M+ + + ++ + L M
Sbjct: 501 QSLETRAEIEEIAMVPRQLITPQANKPVMGIVQDTLCAVRMMTKRDIFIDWPFMMDLLMY 560
Query: 367 C---DKKLTPPPSIIKAPSRNNSLWSGKQLFSMLLPSN 471
D K+ P P+I+K LW+GKQ+FS+++P N
Sbjct: 561 LPTWDGKV-PQPAILKP----KPLWTGKQVFSLIIPGN 593
[185][TOP]
>UniRef100_O61119 DNA-directed RNA polymerase (Fragment) n=1 Tax=Dictyostelium
discoideum RepID=O61119_DICDI
Length = 757
Score = 97.1 bits (240), Expect = 9e-19
Identities = 53/156 (33%), Positives = 93/156 (59%), Gaps = 3/156 (1%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R + DGD V+ NR PS+H+ SM+ ++V+P S+ +N SP DFDGD ++ ++P
Sbjct: 365 RHINDGDVVIFNRQPSLHKMSMMGHRIKVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVP 423
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQML 366
Q++ R E+ E++ + RQ+++ QS R ++ + QD+L + + + + + + M
Sbjct: 424 QTLETRAEVIEIMMVPRQIVSPQSNRPVMGIVQDTLLGSRLFTKRDCFMEKDLVMNILMW 483
Query: 367 C---DKKLTPPPSIIKAPSRNNSLWSGKQLFSMLLP 465
D K+ PPP+I+K LW+GKQLFS+++P
Sbjct: 484 LPSWDGKV-PPPAILKP----KQLWTGKQLFSLIIP 514
[186][TOP]
>UniRef100_Q6CMC7 DNA-directed RNA polymerase n=1 Tax=Kluyveromyces lactis
RepID=Q6CMC7_KLULA
Length = 1457
Score = 97.1 bits (240), Expect = 9e-19
Identities = 54/156 (34%), Positives = 91/156 (58%), Gaps = 4/156 (2%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R + DGD VL NR PS+H+ S++S ++ P + +N C+P DFDGD ++ ++P
Sbjct: 462 RHIEDGDVVLFNRQPSLHRLSILSHYAKIRPWRTF-RLNECVCTPYNADFDGDEMNLHVP 520
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQ-LQM 363
Q+ AR E L+ + L+ +SG +++ +QD +T +Y++ + ++ Q L M
Sbjct: 521 QTEEARAEAINLMGVKNNLLTPKSGEPIIAATQDFITGSYLISHKDSFFDRAQLTQLLSM 580
Query: 364 LCDKKL---TPPPSIIKAPSRNNSLWSGKQLFSMLL 462
+ D L PPPSI+K + LW+GKQ+FS+L+
Sbjct: 581 MSDSNLQFDIPPPSIMKP----HYLWTGKQVFSLLI 612
[187][TOP]
>UniRef100_Q2PYQ4 DNA-directed RNA polymerase (Fragment) n=1 Tax=Orphella haysii
RepID=Q2PYQ4_9FUNG
Length = 750
Score = 97.1 bits (240), Expect = 9e-19
Identities = 54/155 (34%), Positives = 87/155 (56%), Gaps = 2/155 (1%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R L D D V+ NR PS+H+ SM+ VRV+P S+ +N SP DFDGD ++ ++P
Sbjct: 377 RHLVDNDVVIFNRQPSLHKMSMMGHRVRVMPFSTF-RLNLSVTSPYNADFDGDEMNMHVP 435
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQML 366
QS R E+ E+ + RQ+++ QS + ++ + QD+L A + L + L M
Sbjct: 436 QSEETRAEIKEICMVPRQIVSPQSNKPVMGIVQDTLAAIRKFTKRDCFLEADLVMNLLMT 495
Query: 367 CDK--KLTPPPSIIKAPSRNNSLWSGKQLFSMLLP 465
+ + PPP I+K LW+GKQ++S+++P
Sbjct: 496 LPEWDGIVPPPCIMKP----KMLWTGKQIYSLVIP 526
[188][TOP]
>UniRef100_C1H3Q4 DNA-directed RNA polymerase n=1 Tax=Paracoccidioides brasiliensis
Pb01 RepID=C1H3Q4_PARBA
Length = 1748
Score = 97.1 bits (240), Expect = 9e-19
Identities = 55/155 (35%), Positives = 89/155 (57%), Gaps = 2/155 (1%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R + DGD +L NR PS+H+ SM++ VRV+P S+ +N +P DFDGD ++ ++P
Sbjct: 458 RHIVDGDVILFNRQPSLHKESMMAHRVRVMPYSTF-RLNLSVTTPYNADFDGDEMNLHVP 516
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQML 366
QS AR EL++L + Q+++ Q L+ + QD+L Y + V L+ ++ + +
Sbjct: 517 QSEEARAELSQLCMVPLQIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLSKEQVMNILLW 576
Query: 367 CD--KKLTPPPSIIKAPSRNNSLWSGKQLFSMLLP 465
+ P P+I+K R W+GKQL SM+LP
Sbjct: 577 VPDWDGVIPQPAILKPRPR----WTGKQLISMVLP 607
[189][TOP]
>UniRef100_C1GHL1 DNA-directed RNA polymerase n=1 Tax=Paracoccidioides brasiliensis
Pb18 RepID=C1GHL1_PARBD
Length = 1746
Score = 97.1 bits (240), Expect = 9e-19
Identities = 55/155 (35%), Positives = 89/155 (57%), Gaps = 2/155 (1%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R + DGD +L NR PS+H+ SM++ VRV+P S+ +N +P DFDGD ++ ++P
Sbjct: 452 RHIVDGDVILFNRQPSLHKESMMAHRVRVMPYSTF-RLNLSVTTPYNADFDGDEMNLHVP 510
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQML 366
QS AR EL++L + Q+++ Q L+ + QD+L Y + V L+ ++ + +
Sbjct: 511 QSEEARAELSQLCMVPLQIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLSKEQVMNILLW 570
Query: 367 CD--KKLTPPPSIIKAPSRNNSLWSGKQLFSMLLP 465
+ P P+I+K R W+GKQL SM+LP
Sbjct: 571 VPDWDGVIPQPAILKPRPR----WTGKQLISMVLP 601
[190][TOP]
>UniRef100_C0SE75 DNA-directed RNA polymerase n=1 Tax=Paracoccidioides brasiliensis
Pb03 RepID=C0SE75_PARBP
Length = 2106
Score = 97.1 bits (240), Expect = 9e-19
Identities = 55/155 (35%), Positives = 89/155 (57%), Gaps = 2/155 (1%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R + DGD +L NR PS+H+ SM++ VRV+P S+ +N +P DFDGD ++ ++P
Sbjct: 452 RHIVDGDVILFNRQPSLHKESMMAHRVRVMPYSTF-RLNLSVTTPYNADFDGDEMNLHVP 510
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQML 366
QS AR EL++L + Q+++ Q L+ + QD+L Y + V L+ ++ + +
Sbjct: 511 QSEEARAELSQLCMVPLQIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLSKEQVMNILLW 570
Query: 367 CD--KKLTPPPSIIKAPSRNNSLWSGKQLFSMLLP 465
+ P P+I+K R W+GKQL SM+LP
Sbjct: 571 VPDWDGVIPQPAILKPRPR----WTGKQLISMVLP 601
[191][TOP]
>UniRef100_P35084 DNA-directed RNA polymerase II subunit rpb1 n=1 Tax=Dictyostelium
discoideum RepID=RPB1_DICDI
Length = 1727
Score = 97.1 bits (240), Expect = 9e-19
Identities = 53/156 (33%), Positives = 93/156 (59%), Gaps = 3/156 (1%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R + DGD V+ NR PS+H+ SM+ ++V+P S+ +N SP DFDGD ++ ++P
Sbjct: 439 RHINDGDVVIFNRQPSLHKMSMMGHRIKVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVP 497
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQML 366
Q++ R E+ E++ + RQ+++ QS R ++ + QD+L + + + + + + M
Sbjct: 498 QTLETRAEVIEIMMVPRQIVSPQSNRPVMGIVQDTLLGSRLFTKRDCFMEKDLVMNILMW 557
Query: 367 C---DKKLTPPPSIIKAPSRNNSLWSGKQLFSMLLP 465
D K+ PPP+I+K LW+GKQLFS+++P
Sbjct: 558 LPSWDGKV-PPPAILKP----KQLWTGKQLFSLIIP 588
[192][TOP]
>UniRef100_Q9AXN0 DNA-directed RNA polymerase n=1 Tax=Glaucosphaera vacuolata
RepID=Q9AXN0_9RHOD
Length = 1746
Score = 96.7 bits (239), Expect = 1e-18
Identities = 58/159 (36%), Positives = 91/159 (57%), Gaps = 6/159 (3%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R L DGD V+ NR PS+H+ S++ V+V+ SS +N C SP DFDGD ++ ++P
Sbjct: 420 RHLLDGDYVIFNRQPSLHKMSIMGHRVKVMRYSSF-RLNLSCTSPYNADFDGDEMNLHVP 478
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYM------LMEDGVLLNLYEI 348
QS AR E+ +L+ + R +++ Q + ++ + QD+L + ME +++NL
Sbjct: 479 QSPQARAEVMQLMMVPRCIVSPQGNKPVMGIVQDTLVGTMLFTQRDTFMEKDLVMNLL-- 536
Query: 349 QQLQMLCDKKLTPPPSIIKAPSRNNSLWSGKQLFSMLLP 465
L + PPP+I+K LW+GKQLFSM+LP
Sbjct: 537 --LHFRGWDGVIPPPAILKP----RQLWTGKQLFSMILP 569
[193][TOP]
>UniRef100_Q9NJJ5 DNA-directed RNA polymerase (Fragment) n=1 Tax=Speleonectes
tulumensis RepID=Q9NJJ5_9CRUS
Length = 636
Score = 96.7 bits (239), Expect = 1e-18
Identities = 56/158 (35%), Positives = 92/158 (58%), Gaps = 3/158 (1%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R + DGD V+ NR P++H+ SM+ V+VLP S+ +N +P DFDGD ++ ++P
Sbjct: 99 RHIRDGDLVIFNRQPTLHKMSMMGHRVKVLPWSTF-RMNLSVTTPYNADFDGDEMNLHVP 157
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQM- 363
QS+ R E+ + RQ+I Q+ + ++ + QD+L A + + V L ++ L M
Sbjct: 158 QSMETRAEIENIHVTPRQIITPQANKPVMGIVQDTLCAVRKMTKRDVFLEKDQMMNLLMF 217
Query: 364 --LCDKKLTPPPSIIKAPSRNNSLWSGKQLFSMLLPSN 471
+ D K+ P P+I+K LW+GKQLFS+++P N
Sbjct: 218 LPIWDGKM-PQPAILKP----KPLWTGKQLFSLIIPGN 250
[194][TOP]
>UniRef100_Q17085 DNA-directed RNA polymerase (Fragment) n=1 Tax=Artemia salina
RepID=Q17085_ARTSA
Length = 1341
Score = 96.7 bits (239), Expect = 1e-18
Identities = 58/156 (37%), Positives = 90/156 (57%), Gaps = 3/156 (1%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R + DGD V+ NR P++H+ SM+ VRVLP S+ +N C +P DFDGD ++ ++
Sbjct: 360 RHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTF-RMNLSCTTPYNADFDGDEMNLHVA 418
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQML 366
QS+ R EL + RQ+I Q+ R ++ + QD+L A + + V L ++ L M
Sbjct: 419 QSLETRAELENIHITPRQIITPQANRPVMGIVQDTLCAVRKMTKRDVFLEKEQMMTLLMY 478
Query: 367 C---DKKLTPPPSIIKAPSRNNSLWSGKQLFSMLLP 465
D KL P P+I+K LW+GKQLF++++P
Sbjct: 479 LPTWDGKL-PQPAILKP----KPLWTGKQLFTLIIP 509
[195][TOP]
>UniRef100_B8MLB5 DNA-directed RNA polymerase n=1 Tax=Talaromyces stipitatus ATCC 10500
RepID=B8MLB5_TALSN
Length = 1441
Score = 96.7 bits (239), Expect = 1e-18
Identities = 67/202 (33%), Positives = 103/202 (50%), Gaps = 16/202 (7%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R L DGD L NR PS+H+ S++S V+V P + +N C+P DFDGD ++ +IP
Sbjct: 466 RHLVDGDIALYNRQPSLHKLSILSHFVKVRPYRTF-RMNECVCNPYNADFDGDEMNLHIP 524
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQML 366
Q+ AR E EL+ + L+ ++G ++ QD ++AAYML N ++ + +
Sbjct: 525 QTEEARSEAMELMGVKNNLVTPKNGEPIIGAIQDFISAAYMLSSKD---NFFDRRSFTQI 581
Query: 367 CDKKL-------TPPPSIIKAPSRNNSLWSGKQLFSMLLPSNFDYSFPPN-------GVS 504
C L PPP+I+K LW+GKQ+F++L+ N D N +
Sbjct: 582 CLYMLGPETRFDLPPPAILKP----QMLWTGKQVFNILMRPNKDDPVKVNIDAACREFKA 637
Query: 505 VSDGELTSSFESSGWL--RDSE 564
DG+ + GWL R+SE
Sbjct: 638 PKDGQPKDLDPNDGWLVIRNSE 659
[196][TOP]
>UniRef100_B6H9U6 DNA-directed RNA polymerase n=1 Tax=Penicillium chrysogenum
Wisconsin 54-1255 RepID=B6H9U6_PENCW
Length = 1733
Score = 96.7 bits (239), Expect = 1e-18
Identities = 56/159 (35%), Positives = 84/159 (52%), Gaps = 2/159 (1%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R L DGD +L NR PS+H+ SM+ VRV+P S+ +N SP DFDGD ++ ++P
Sbjct: 445 RHLDDGDYILFNRQPSLHKESMMGHRVRVMPFSTF-RMNLSVTSPYNADFDGDEMNLHVP 503
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQML 366
Q +R EL EL + + +++ Q L+ + QD+L Y + L ++ L +
Sbjct: 504 QGEESRAELAELTLVPKNIVSPQRNGPLMGIVQDTLCGIYKICRRDTFLTKDQVMNLMLW 563
Query: 367 CD--KKLTPPPSIIKAPSRNNSLWSGKQLFSMLLPSNFD 477
PPP+IIK R W+GKQ+ SM PS +
Sbjct: 564 VPDWDGAIPPPAIIKPRPR----WTGKQMISMAFPSGLN 598
[197][TOP]
>UniRef100_A7J586 DNA-directed RNA polymerase (Fragment) n=1 Tax=Lobariella pallida
RepID=A7J586_9LECA
Length = 996
Score = 96.7 bits (239), Expect = 1e-18
Identities = 59/183 (32%), Positives = 98/183 (53%), Gaps = 11/183 (6%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R + DGD ++ NR PS+H+ SM+ VRV+P S+ +N SP DFDGD ++ ++P
Sbjct: 349 RHIIDGDYIIFNRQPSLHKESMMGHRVRVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVP 407
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQML 366
QS R E+N+L + +++ Q L+ + QD+L Y L V LN ++ + +
Sbjct: 408 QSEETRAEINQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKLCRRDVFLNKEQVMNILLW 467
Query: 367 CD--KKLTPPPSIIKAPSRNNSLWSGKQLFSMLLPSNFDYS------FPP---NGVSVSD 513
+ P P+I+K + W+GKQ+ S+++P + + F P +G+ VS
Sbjct: 468 VPDWDGVLPQPAILKPRPK----WTGKQIISLVIPPGLNLTRSSSEGFSPLNDDGLFVSG 523
Query: 514 GEL 522
GEL
Sbjct: 524 GEL 526
[198][TOP]
>UniRef100_C8SAT5 DNA-directed RNA polymerase subunit A' n=1 Tax=Ferroglobus placidus
DSM 10642 RepID=C8SAT5_FERPL
Length = 870
Score = 96.7 bits (239), Expect = 1e-18
Identities = 53/153 (34%), Positives = 87/153 (56%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R L DGD VL NR PS+H+ S+++ VRVLP + +NP C P DFDGD ++ ++P
Sbjct: 401 RQLKDGDIVLFNRQPSLHRMSIMAHYVRVLPYKTF-RLNPAVCPPYNADFDGDEMNLHVP 459
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQML 366
QS+ A+ E L+A+ +++ + G ++ D ++ Y+L L + E+ +L
Sbjct: 460 QSIEAQAEAKILMAVQEHILSPRFGGPIIGGIHDHISGLYLLTRGEKLFSKEEVMELIRP 519
Query: 367 CDKKLTPPPSIIKAPSRNNSLWSGKQLFSMLLP 465
+ + P P + +S W+GKQ+FSM+LP
Sbjct: 520 INVEKIPEP-------KYDSKWTGKQIFSMILP 545
[199][TOP]
>UniRef100_UPI0000E48917 PREDICTED: similar to RNA polymerase III largest subunit, partial
n=1 Tax=Strongylocentrotus purpuratus
RepID=UPI0000E48917
Length = 427
Score = 96.3 bits (238), Expect = 2e-18
Identities = 63/181 (34%), Positives = 96/181 (53%), Gaps = 10/181 (5%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R L DGD VL NR PS+H+ S+++ RV P + N C+P DFDGD ++ ++P
Sbjct: 178 RHLIDGDIVLFNRQPSLHKLSIMAHKARVKPFRTF-RFNACVCTPYNADFDGDEMNLHLP 236
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQL--Q 360
Q+ A+ E L+ + L+ ++G L++ QD +T AY+L V + QL
Sbjct: 237 QTEEAKAEALTLMGVKSNLVTPRNGEPLIAAIQDFITGAYLLTSKEVFFDRSRACQLVAA 296
Query: 361 MLCDK----KLTPPPSIIKAPSRNNSLWSGKQLFSMLLPSNFDYSFPPN----GVSVSDG 516
ML + ++T PP I+ P R LW+GKQ+FS++L N D N G + + G
Sbjct: 297 MLSSQETNMRITLPPPAIQKPVR---LWTGKQVFSLILRPNSDSDVKANLRAKGKNYTSG 353
Query: 517 E 519
E
Sbjct: 354 E 354
[200][TOP]
>UniRef100_Q3SE61 DNA-directed RNA polymerase n=1 Tax=Paramecium tetraurelia
RepID=Q3SE61_PARTE
Length = 1751
Score = 96.3 bits (238), Expect = 2e-18
Identities = 55/160 (34%), Positives = 91/160 (56%), Gaps = 3/160 (1%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R L DGD VL NR P++H+ SM+ VR+LP S+ +N C+P DFDGD ++ ++P
Sbjct: 430 RCLQDGDFVLFNRQPTLHRMSMMGHRVRILPYSTF-RLNLSVCTPYNADFDGDEMNMHVP 488
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQML 366
QS EL L + RQ++ +S + ++ + QDSL + + L ++ L M+
Sbjct: 489 QSYETIAELKYLAHVPRQIVTPKSNQPVMGIVQDSLLGCCLFTQRDTFLTRDQVMHL-MM 547
Query: 367 CDKKLT---PPPSIIKAPSRNNSLWSGKQLFSMLLPSNFD 477
+++ T P P+I+K LW+GKQ+ SM++P + +
Sbjct: 548 WNEQFTGELPMPAILKP----QELWTGKQIMSMIIPQSIN 583
[201][TOP]
>UniRef100_C5KZ53 DNA-directed RNA polymerase n=1 Tax=Perkinsus marinus ATCC 50983
RepID=C5KZ53_9ALVE
Length = 1719
Score = 96.3 bits (238), Expect = 2e-18
Identities = 56/156 (35%), Positives = 88/156 (56%), Gaps = 4/156 (2%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R L DGD VL NR PS+H+ S+++ +V+P + N CSP DFDGD ++ ++P
Sbjct: 424 RHLQDGDVVLFNRQPSLHKMSIMAHRAKVMPWRTF-RFNECVCSPYNADFDGDEMNVHLP 482
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQML 366
Q+ AR E L+ + LI ++G +++ +QD LT+A++L + L +I + M
Sbjct: 483 QTQEARAEALALMGVQNNLITSKNGEPIVAATQDFLTSAWLLTQRDTFLTKDKIANIAMY 542
Query: 367 CDKKL----TPPPSIIKAPSRNNSLWSGKQLFSMLL 462
K PPP+I+K LW+GKQL S++L
Sbjct: 543 FGKAAETLELPPPTIMKP----IQLWTGKQLISLML 574
[202][TOP]
>UniRef100_B7PJA3 DNA-directed RNA polymerase (Fragment) n=1 Tax=Ixodes scapularis
RepID=B7PJA3_IXOSC
Length = 1937
Score = 96.3 bits (238), Expect = 2e-18
Identities = 53/158 (33%), Positives = 95/158 (60%), Gaps = 3/158 (1%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R + +GD ++ NR P++H+ SM+ ++VLP S+ +N +P DFDGD ++ ++P
Sbjct: 448 RHVRNGDIIVFNRQPTLHKMSMMGHRIKVLPWSTF-RMNLSVTTPYNADFDGDEMNLHVP 506
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQM- 363
QS+ R E+ +L + RQ+I QS + ++ + QD+LTA + + + L ++ + M
Sbjct: 507 QSLETRAEVEQLAMVPRQIITPQSNKPVMGIVQDTLTAVRKMTKRDIFLEKDQMMTILMF 566
Query: 364 --LCDKKLTPPPSIIKAPSRNNSLWSGKQLFSMLLPSN 471
+ D K+ P P+I+K LW+GKQ+FS+++P N
Sbjct: 567 LPIWDGKM-PMPAILKP----KPLWTGKQIFSLIIPGN 599
[203][TOP]
>UniRef100_A9UN86 DNA-directed RNA polymerase (Fragment) n=1 Tax=Drosophila
melanogaster RepID=A9UN86_DROME
Length = 1410
Score = 96.3 bits (238), Expect = 2e-18
Identities = 63/175 (36%), Positives = 94/175 (53%), Gaps = 7/175 (4%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R L DGD VL NR PS+H+ S++ +V P N C+P DFDGD ++ ++P
Sbjct: 478 RHLRDGDIVLFNRQPSLHKMSIMCHRAKVQP-QRTFRFNECACTPYNADFDGDEMNLHLP 536
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQ-- 360
Q+ AR E L+ L+ ++G L++ +QD +T Y+L + V L E QL
Sbjct: 537 QTEEARAEALILMGNQSNLVTPKNGEILIAATQDFITGGYLLTQKEVFLTKEEAMQLAAC 596
Query: 361 MLCDKKLT-----PPPSIIKAPSRNNSLWSGKQLFSMLLPSNFDYSFPPNGVSVS 510
L ++ T PPP+++K P R LW+GKQ+FS+L+ N D N V+ S
Sbjct: 597 FLANEDSTMHIKLPPPALLK-PRR---LWTGKQMFSLLMRPNDDSQVRLNMVNKS 647
[204][TOP]
>UniRef100_A0BYP5 DNA-directed RNA polymerase n=1 Tax=Paramecium tetraurelia
RepID=A0BYP5_PARTE
Length = 1750
Score = 96.3 bits (238), Expect = 2e-18
Identities = 55/160 (34%), Positives = 91/160 (56%), Gaps = 3/160 (1%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R L DGD VL NR P++H+ SM+ VR+LP S+ +N C+P DFDGD ++ ++P
Sbjct: 430 RCLQDGDFVLFNRQPTLHRMSMMGHRVRILPYSTF-RLNLSVCTPYNADFDGDEMNMHVP 488
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQML 366
QS EL L + RQ++ +S + ++ + QDSL + + L ++ L M+
Sbjct: 489 QSYETIAELKYLAHVPRQIVTPKSNQPVMGIVQDSLLGCCLFTQRDTFLTRDQVMHL-MM 547
Query: 367 CDKKLT---PPPSIIKAPSRNNSLWSGKQLFSMLLPSNFD 477
+++ T P P+I+K LW+GKQ+ SM++P + +
Sbjct: 548 WNEQFTGELPMPAILKP----QELWTGKQIMSMIIPQSIN 583
[205][TOP]
>UniRef100_Q9HGZ5 DNA-directed RNA polymerase n=2 Tax=Aspergillus RepID=Q9HGZ5_ASPOR
Length = 1748
Score = 96.3 bits (238), Expect = 2e-18
Identities = 55/159 (34%), Positives = 86/159 (54%), Gaps = 2/159 (1%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R + DGD +L NR PS+H+ SM+ VRV+P S+ +N +P DFDGD ++ ++P
Sbjct: 449 RHVMDGDVILFNRQPSLHKESMMGHRVRVMPYSTF-RLNLSVTTPYNADFDGDEMNLHVP 507
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQML 366
QS +R EL +L + +++ Q L+ + QD+L Y + L ++ L M
Sbjct: 508 QSEESRAELLQLALVPMNIVSPQRNGPLMGIVQDTLCGIYKICRRDTFLTKEQVMNLMMW 567
Query: 367 CD--KKLTPPPSIIKAPSRNNSLWSGKQLFSMLLPSNFD 477
+ PPP+I+K R W+GKQ+ SM LPS +
Sbjct: 568 VPDWDGVIPPPAILKPRPR----WTGKQIISMALPSGLN 602
[206][TOP]
>UniRef100_Q2PYS8 DNA-directed RNA polymerase (Fragment) n=1 Tax=Rozella allomycis
RepID=Q2PYS8_9FUNG
Length = 809
Score = 96.3 bits (238), Expect = 2e-18
Identities = 67/192 (34%), Positives = 98/192 (51%), Gaps = 18/192 (9%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R + DGD VL NR PS+H+ SM+ ++V+P S+ +N +P DFDGD ++ +IP
Sbjct: 165 RHINDGDVVLFNRQPSLHKMSMMGHRIKVMPYSTF-RLNLSVTTPYNADFDGDEMNLHIP 223
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQML 366
QSV A+ EL EL + Q+++ QS + + + QD+L LN + + M
Sbjct: 224 QSVEAKAELVELALVPTQIVSPQSNKPCMGIVQDTLCGVRKFTRRESFLNKAMVMNIVMW 283
Query: 367 C---DKKLTPPPSIIKAPSRNNSLWSGKQLFSMLLPS-----NFDYSFPPNGVS------ 504
+ KL P P I+K LWSGKQ+FSM++P F + P N S
Sbjct: 284 LPSWEGKL-PRPCILKPV----PLWSGKQIFSMIIPKGVNCVTFHSTHPDNEYSDISPGD 338
Query: 505 ----VSDGELTS 528
+ DGEL S
Sbjct: 339 TKVLIEDGELIS 350
[207][TOP]
>UniRef100_Q0PQ02 DNA-directed RNA polymerase (Fragment) n=1 Tax=Lecanora hybocarpa
RepID=Q0PQ02_9LECA
Length = 1016
Score = 96.3 bits (238), Expect = 2e-18
Identities = 58/183 (31%), Positives = 97/183 (53%), Gaps = 11/183 (6%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R + DGD ++ NR PS+H+ SM+ VRV+P S+ +N SP DFDGD ++ ++P
Sbjct: 369 RHIVDGDYIIFNRQPSLHKESMMGHRVRVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVP 427
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQML 366
QS R E+N+L + +++ Q L+ + QD+L Y + V L ++ + +
Sbjct: 428 QSEETRAEVNQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKMCRRDVFLTKEQVMNILLW 487
Query: 367 CD--KKLTPPPSIIKAPSRNNSLWSGKQLFSMLLPSNF------DYSFPP---NGVSVSD 513
+ P P+I+K +W+GKQ+ S+++P+ D F P +G+ VS
Sbjct: 488 VPDWDGVIPQPAILKP----RPMWTGKQILSLVIPAGLNLLRGSDEGFSPLNDDGLLVSG 543
Query: 514 GEL 522
GEL
Sbjct: 544 GEL 546
[208][TOP]
>UniRef100_A5E7R0 DNA-directed RNA polymerase n=1 Tax=Lodderomyces elongisporus
RepID=A5E7R0_LODEL
Length = 1450
Score = 96.3 bits (238), Expect = 2e-18
Identities = 54/159 (33%), Positives = 90/159 (56%), Gaps = 4/159 (2%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R + DGD VL NR PS+H+ S++S ++ P + +N C+P DFDGD ++ ++P
Sbjct: 466 RHIEDGDVVLFNRQPSLHRLSILSHYAKIRPWRTF-RLNECVCTPYNADFDGDEMNLHVP 524
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYE-IQQLQM 363
Q+ AR E L+ + L+ +SG +++ +QD +T +Y++ L+ +Q L M
Sbjct: 525 QTEEARAEAINLMGVKNNLLTPKSGEPIIAATQDFITGSYLISHKDTFLDRASLVQLLSM 584
Query: 364 LCDKKL---TPPPSIIKAPSRNNSLWSGKQLFSMLLPSN 471
+ D + PPP+I K LW+GKQ+FS+L+ N
Sbjct: 585 MSDADIHFDIPPPAIFKPV----MLWTGKQVFSLLIKPN 619
[209][TOP]
>UniRef100_UPI000151B46E DNA-directed RNA polymerase III largest subunit n=1 Tax=Pichia
guilliermondii ATCC 6260 RepID=UPI000151B46E
Length = 1379
Score = 95.9 bits (237), Expect = 2e-18
Identities = 56/159 (35%), Positives = 90/159 (56%), Gaps = 4/159 (2%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R + DGD VL NR PS+H+ S++S ++ P + +N C+P DFDGD ++ ++P
Sbjct: 391 RHIEDGDVVLFNRQPSLHRLSILSHYAKIRPWRTF-RLNECVCTPYNADFDGDEMNLHVP 449
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLM-EDGVLLNLYEIQQLQM 363
Q+ AR E L+ + L+ +SG +++ +QD +T +Y++ +D IQ L M
Sbjct: 450 QTEEARAEAINLMGVKNNLLTPKSGEPIIAATQDFITGSYLISHKDSFYDRATFIQLLSM 509
Query: 364 LCDKKL---TPPPSIIKAPSRNNSLWSGKQLFSMLLPSN 471
+ D L PPP+I K LW+GKQ+FS+L+ N
Sbjct: 510 MSDADLQFDLPPPTIFKPV----MLWTGKQVFSLLMKPN 544
[210][TOP]
>UniRef100_Q84KP6 DNA-directed RNA polymerase n=1 Tax=Cyanidioschyzon merolae
RepID=Q84KP6_CYAME
Length = 1819
Score = 95.9 bits (237), Expect = 2e-18
Identities = 59/170 (34%), Positives = 93/170 (54%), Gaps = 6/170 (3%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R L +GD VL NR PS+H+ S++ VR+LP S+ +N SP DFDGD ++ ++P
Sbjct: 443 RHLLNGDLVLFNRQPSLHRMSIMGHRVRILPYSTF-RMNLSATSPYNADFDGDEMNLHVP 501
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYM------LMEDGVLLNLYEI 348
QS R E+ EL+A+ + +++ Q+ R ++ + QDSL + +E+ + NL
Sbjct: 502 QSEEVRAEIKELMAVPKNIVSPQANRPVMGIVQDSLLGCMLFTLRDTFLEEDTVFNLL-- 559
Query: 349 QQLQMLCDKKLTPPPSIIKAPSRNNSLWSGKQLFSMLLPSNFDYSFPPNG 498
L + P P+I+K LW+GKQ+FS+LLP + NG
Sbjct: 560 --LHLPHFDGRIPAPAILKP----RPLWTGKQIFSLLLPDGVNLERLSNG 603
[211][TOP]
>UniRef100_Q25203 DNA-directed RNA polymerase (Fragment) n=1 Tax=Ilyanassa obsoleta
RepID=Q25203_9CAEN
Length = 1343
Score = 95.9 bits (237), Expect = 2e-18
Identities = 65/196 (33%), Positives = 104/196 (53%), Gaps = 22/196 (11%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R + D D V+ NR P++H+ SM+ V+VLP S+ +N +P DFDGD ++ ++P
Sbjct: 362 RHMQDNDVVIFNRQPTLHKMSMMCHRVKVLPWSTF-RMNLSVTTPYNADFDGDEMNLHLP 420
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQML 366
QS+ R E+ L A+ R +I Q+ R ++ + QD+LTA + + V L ++ L M
Sbjct: 421 QSLETRAEIMNLCAVPRMIITPQANRPVMGIVQDTLTAVRKMTKRDVFLTRAQMMHLLMF 480
Query: 367 C---DKKLTPPPSIIKAPSRNNSLWSGKQLFSMLLPSNFD----YSFPPNG--------- 498
D ++ P P+IIK LW+GKQ+FS+++P + +S P+G
Sbjct: 481 LPTWDGRM-PQPAIIKP----EPLWTGKQIFSLVIPGRVNVIRTHSTHPDGEDSGPYKWI 535
Query: 499 ------VSVSDGELTS 528
V + DGEL S
Sbjct: 536 SPGDTKVLIEDGELIS 551
[212][TOP]
>UniRef100_C5PCH6 DNA-directed RNA polymerase n=1 Tax=Coccidioides posadasii C735
delta SOWgp RepID=C5PCH6_COCP7
Length = 1444
Score = 95.9 bits (237), Expect = 2e-18
Identities = 56/159 (35%), Positives = 87/159 (54%), Gaps = 7/159 (4%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R L DGD VL NR PS+H+ S++S V+V P +N C+P DFDGD ++ ++P
Sbjct: 466 RHLEDGDIVLFNRQPSLHKLSILSHFVKVRP-HRTFRLNECVCNPYNADFDGDEMNLHVP 524
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQML 366
Q+ AR E EL+ + L ++G +++ QD +TAAY+L N Y+ +
Sbjct: 525 QTEEARAEAMELMGVKNNLATPKNGEPIIAAIQDFITAAYLLSSKD---NFYDRGSFTQI 581
Query: 367 CDKKL-------TPPPSIIKAPSRNNSLWSGKQLFSMLL 462
C L PPP+++K LW+GKQ+F++L+
Sbjct: 582 CGYMLQPGTKFDLPPPAVLKP----QMLWTGKQVFNVLM 616
[213][TOP]
>UniRef100_C5GKA7 DNA-directed RNA polymerase n=2 Tax=Ajellomyces dermatitidis
RepID=C5GKA7_AJEDR
Length = 1746
Score = 95.9 bits (237), Expect = 2e-18
Identities = 54/159 (33%), Positives = 89/159 (55%), Gaps = 2/159 (1%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R + DGD +L NR PS+H+ SM+ +RV+P S+ +N +P DFDGD ++ ++P
Sbjct: 452 RHIVDGDVILFNRQPSLHKESMMGHRIRVMPYSTF-RLNLSVTTPYNADFDGDEMNLHVP 510
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQML 366
QS AR EL++L + Q+++ Q L+ + QD+L Y + V L +I + +
Sbjct: 511 QSEEARAELSQLCMVPLQIVSPQRNGPLMGIVQDTLCGIYKICSRDVFLTKEQIMNILLW 570
Query: 367 CD--KKLTPPPSIIKAPSRNNSLWSGKQLFSMLLPSNFD 477
+ P P+I+K R W+GKQ+ SM+LP+ +
Sbjct: 571 VPDWDGVIPQPAILKPRPR----WTGKQVISMVLPAGLN 605
[214][TOP]
>UniRef100_A5DM42 DNA-directed RNA polymerase n=1 Tax=Pichia guilliermondii
RepID=A5DM42_PICGU
Length = 1379
Score = 95.9 bits (237), Expect = 2e-18
Identities = 56/159 (35%), Positives = 90/159 (56%), Gaps = 4/159 (2%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R + DGD VL NR PS+H+ S++S ++ P + +N C+P DFDGD ++ ++P
Sbjct: 391 RHIEDGDVVLFNRQPSLHRLSILSHYAKIRPWRTF-RLNECVCTPYNADFDGDEMNLHVP 449
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLM-EDGVLLNLYEIQQLQM 363
Q+ AR E L+ + L+ +SG +++ +QD +T +Y++ +D IQ L M
Sbjct: 450 QTEEARAEAINLMGVKNNLLTPKSGEPIIAATQDFITGSYLISHKDSFYDRATFIQLLSM 509
Query: 364 LCDKKL---TPPPSIIKAPSRNNSLWSGKQLFSMLLPSN 471
+ D L PPP+I K LW+GKQ+FS+L+ N
Sbjct: 510 MSDADLQFDLPPPTIFKPV----MLWTGKQVFSLLMKPN 544
[215][TOP]
>UniRef100_A3GEY3 DNA-directed RNA polymerase n=1 Tax=Pichia stipitis
RepID=A3GEY3_PICST
Length = 1448
Score = 95.9 bits (237), Expect = 2e-18
Identities = 55/159 (34%), Positives = 90/159 (56%), Gaps = 4/159 (2%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R + DGD VL NR PS+H+ S++S ++ P + +N C+P DFDGD ++ ++P
Sbjct: 462 RHIEDGDVVLFNRQPSLHRLSILSHYAKIRPWRTF-RLNECVCTPYNADFDGDEMNLHVP 520
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLM-EDGVLLNLYEIQQLQM 363
Q+ AR E L+ + L+ +SG +++ +QD +T +Y++ +D +Q L M
Sbjct: 521 QTEEARAEAINLMGVKNNLLTPKSGEPIIAATQDFITGSYLISHKDSFFDRASLVQLLSM 580
Query: 364 LCDKKL---TPPPSIIKAPSRNNSLWSGKQLFSMLLPSN 471
+ D + PPPSI K LW+GKQ+FS+L+ N
Sbjct: 581 MSDADVQFDIPPPSIFKPV----MLWTGKQVFSLLIKPN 615
[216][TOP]
>UniRef100_Q980R2 DNA-directed RNA polymerase subunit A' n=2 Tax=Sulfolobus
solfataricus RepID=RPOA1_SULSO
Length = 880
Score = 95.9 bits (237), Expect = 2e-18
Identities = 57/158 (36%), Positives = 87/158 (55%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R L DGD VL NR PS+H+ SM++ VRVL +N L C P DFDGD ++ ++P
Sbjct: 409 RHLIDGDIVLFNRQPSLHRISMMAHRVRVLK-GLTFRLNLLVCPPYNADFDGDEMNLHVP 467
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQML 366
QS A E E++ + + +I + G ++ +QD ++ AY+L LL E QQ+ +
Sbjct: 468 QSEEAIAEAKEIMLVHKNIITPRYGGPIIGAAQDYISGAYLLTVKTTLLTKEEAQQILGV 527
Query: 367 CDKKLTPPPSIIKAPSRNNSLWSGKQLFSMLLPSNFDY 480
D K+ I AP ++GKQ+ S LP +F++
Sbjct: 528 ADVKIDLGEPAILAP---REYYTGKQVISAFLPKDFNF 562
[217][TOP]
>UniRef100_O77165 DNA-directed RNA polymerase (Fragment) n=1 Tax=Breviata anathema
RepID=O77165_9EUKA
Length = 1690
Score = 95.5 bits (236), Expect = 3e-18
Identities = 60/164 (36%), Positives = 89/164 (54%), Gaps = 6/164 (3%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R L DGD V+ NR PS+H+ SM+ VRVLP SS +N +P DFDGD ++ ++P
Sbjct: 344 RHLMDGDHVVFNRQPSLHKMSMMGHQVRVLPYSS-FRLNLSVTTPYNADFDGDEMNMHVP 402
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYML------MEDGVLLNLYEI 348
S+ A E+ L+A+ Q++ Q + + QDSL ++ + + V++NL
Sbjct: 403 NSLEAISEVKNLMAVPFQIVTPQKNSPCMGVVQDSLLGCSLISRRDTFLTEDVMMNL--- 459
Query: 349 QQLQMLCDKKLTPPPSIIKAPSRNNSLWSGKQLFSMLLPSNFDY 480
L + D P P+I+ R LW+GKQ FSMLLP + Y
Sbjct: 460 -ALVISYDPDKIPQPAIL----RPKPLWTGKQAFSMLLPKDLSY 498
[218][TOP]
>UniRef100_B4PX62 DNA-directed RNA polymerase n=1 Tax=Drosophila yakuba
RepID=B4PX62_DROYA
Length = 1383
Score = 95.5 bits (236), Expect = 3e-18
Identities = 60/164 (36%), Positives = 90/164 (54%), Gaps = 7/164 (4%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R L DGD VL NR PS+H+ S++ +V P N C+P DFDGD ++ ++P
Sbjct: 451 RHLRDGDIVLFNRQPSLHKMSIMCHRAKVQP-QRTFRFNECACTPYNADFDGDEMNLHLP 509
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQ-- 360
Q+ AR E L+ L+ ++G L++ +QD +T Y+L + V L E QL
Sbjct: 510 QTEEARAEALILMGNQSNLVTPKNGEILIAATQDFITGGYLLTQKEVFLTKEEAMQLAAC 569
Query: 361 MLCDKKLT-----PPPSIIKAPSRNNSLWSGKQLFSMLLPSNFD 477
L ++ T PPP+++K P R LW+GKQ+FS+L+ N D
Sbjct: 570 FLANEDSTMHIKLPPPALLK-PRR---LWTGKQMFSLLMRPNDD 609
[219][TOP]
>UniRef100_A8JUY3 DNA-directed RNA polymerase n=1 Tax=Drosophila melanogaster
RepID=A8JUY3_DROME
Length = 1376
Score = 95.5 bits (236), Expect = 3e-18
Identities = 60/164 (36%), Positives = 90/164 (54%), Gaps = 7/164 (4%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R L DGD VL NR PS+H+ S++ +V P N C+P DFDGD ++ ++P
Sbjct: 451 RHLRDGDIVLFNRQPSLHKMSIMCHRAKVQP-QRTFRFNECACTPYNADFDGDEMNLHLP 509
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQ-- 360
Q+ AR E L+ L+ ++G L++ +QD +T Y+L + V L E QL
Sbjct: 510 QTEEARAEALILMGNQSNLVTPKNGEILIAATQDFITGGYLLTQKEVFLTKEEAMQLAAC 569
Query: 361 MLCDKKLT-----PPPSIIKAPSRNNSLWSGKQLFSMLLPSNFD 477
L ++ T PPP+++K P R LW+GKQ+FS+L+ N D
Sbjct: 570 FLANEDSTMHIKLPPPALLK-PRR---LWTGKQMFSLLMRPNDD 609
[220][TOP]
>UniRef100_Q7RXJ6 DNA-directed RNA polymerase n=1 Tax=Neurospora crassa
RepID=Q7RXJ6_NEUCR
Length = 1474
Score = 95.5 bits (236), Expect = 3e-18
Identities = 57/162 (35%), Positives = 91/162 (56%), Gaps = 7/162 (4%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R L DGD VL NR PS+H+ S++S +V P + +N C+P DFDGD ++ ++P
Sbjct: 405 RHLEDGDIVLFNRQPSLHKLSIMSHRAKVRPWRTF-RLNECVCTPYNADFDGDEMNLHLP 463
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQML 366
Q+ AR E L+ + LI ++G +++ +QD +TAAY+L + L + + +
Sbjct: 464 QTEEARAEAINLMGVQNNLITPKNGEPIIAATQDFITAAYLLSSKDLFL---DRKTFTYI 520
Query: 367 CDKKL-------TPPPSIIKAPSRNNSLWSGKQLFSMLLPSN 471
C + L PPP+IIK LW+GKQ+F++L+ N
Sbjct: 521 CTQMLLGETHLDLPPPTIIKPV----ELWTGKQIFNVLMRPN 558
[221][TOP]
>UniRef100_C5FEK3 DNA-directed RNA polymerase n=1 Tax=Microsporum canis CBS 113480
RepID=C5FEK3_NANOT
Length = 1443
Score = 95.5 bits (236), Expect = 3e-18
Identities = 58/164 (35%), Positives = 89/164 (54%), Gaps = 7/164 (4%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R L DGD VL NR PS+H+ S++S V+V P +N C+P DFDGD ++ ++P
Sbjct: 465 RHLEDGDIVLFNRQPSLHKLSILSHFVKVRP-HRTFRLNECVCNPYNADFDGDEMNLHVP 523
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQML 366
Q+ AR E EL+ + L ++G +++ QD +TAAY+L N ++ + +
Sbjct: 524 QTEEARSEAMELMGVKNNLATPKNGAPIIAAIQDFITAAYLLSSKD---NFFDRKTFTQI 580
Query: 367 CDKKL-------TPPPSIIKAPSRNNSLWSGKQLFSMLLPSNFD 477
C L PPP+ +K LW+GKQ+FS+L+ N D
Sbjct: 581 CLSMLDSSTRLELPPPATLKP----QMLWTGKQVFSVLMRPNKD 620
[222][TOP]
>UniRef100_C4JWU1 DNA-directed RNA polymerase n=1 Tax=Uncinocarpus reesii 1704
RepID=C4JWU1_UNCRE
Length = 1435
Score = 95.5 bits (236), Expect = 3e-18
Identities = 56/164 (34%), Positives = 90/164 (54%), Gaps = 7/164 (4%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R L DGD VL NR PS+H+ S++S V+V P +N C+P DFDGD ++ ++P
Sbjct: 466 RHLEDGDIVLFNRQPSLHKLSILSHFVKVRP-HRTFRLNECVCNPYNADFDGDEMNLHVP 524
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQML 366
Q+ AR E EL+ + L ++G +++ QD +TAAY+L N Y+ + +
Sbjct: 525 QTEEARAEAMELMGVKNNLATPKNGEPIIAAIQDFITAAYLLSSKD---NFYDRKTFLLY 581
Query: 367 CDKKL-------TPPPSIIKAPSRNNSLWSGKQLFSMLLPSNFD 477
C L PPP+++K LW+GKQ+F++++ + D
Sbjct: 582 CGYMLEPGTKFDLPPPAVLKP----QMLWTGKQVFNVMMRPSKD 621
[223][TOP]
>UniRef100_C3S7Q0 DNA-directed RNA polymerase (Fragment) n=1 Tax=Kabatana sp. JI-2008
RepID=C3S7Q0_9MICR
Length = 909
Score = 95.5 bits (236), Expect = 3e-18
Identities = 71/190 (37%), Positives = 98/190 (51%), Gaps = 4/190 (2%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R + DGD VL NR PS+H+ SM++ VRV+ +N +P DFDGD ++ ++P
Sbjct: 319 RHMADGDTVLFNRQPSLHKMSMMAHRVRVMD-RLTFRLNLSATTPYNADFDGDEMNLHMP 377
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQML 366
QS EL EL L Q+++ Q + ++ L QD+L L N E+ L
Sbjct: 378 QSYQTMAELKELAFLPTQIVSPQGNKPVMGLVQDTLIGVRRLTSRDSFFNEQEVMALMFK 437
Query: 367 CD--KKLTPPPSIIKAPSRNNSLWSGKQLFSMLLPS-NFDYSFPPNGVSVSDGELTSSFE 537
C KKL P +IK P R L+SGKQLFS+ LP NF +GV+ +D + S E
Sbjct: 438 CQNVKKLKP---VIKRPLR---LYSGKQLFSLNLPEINF------HGVT-NDPDFGDSIE 484
Query: 538 S-SGWLRDSE 564
GW SE
Sbjct: 485 KLDGWNLGSE 494
[224][TOP]
>UniRef100_B6H2R1 DNA-directed RNA polymerase n=1 Tax=Penicillium chrysogenum
Wisconsin 54-1255 RepID=B6H2R1_PENCW
Length = 1448
Score = 95.5 bits (236), Expect = 3e-18
Identities = 57/164 (34%), Positives = 88/164 (53%), Gaps = 7/164 (4%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R L DGD VL NR PS+H+ S++S ++ P +N C+P DFDGD ++ ++P
Sbjct: 466 RHLEDGDIVLFNRQPSLHKLSILSHFAKIRP-HRTFRLNECVCNPYNADFDGDEMNLHVP 524
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQML 366
Q+ AR E EL+ + L ++G ++S QD ++AAY+L N Y+ +
Sbjct: 525 QTEEARAEAMELMGVKNNLATPKNGEPIISAIQDFISAAYVLSSKD---NFYDRASFTQI 581
Query: 367 CDKKL-------TPPPSIIKAPSRNNSLWSGKQLFSMLLPSNFD 477
C L PPPSI+K +W+GKQ+F++L+ N D
Sbjct: 582 CLYMLGPETRFDLPPPSILKP----QMMWTGKQVFNILMRPNKD 621
[225][TOP]
>UniRef100_A7J591 DNA-directed RNA polymerase (Fragment) n=1 Tax=Anaptychia palmatula
RepID=A7J591_9LECA
Length = 1020
Score = 95.5 bits (236), Expect = 3e-18
Identities = 56/181 (30%), Positives = 95/181 (52%), Gaps = 9/181 (4%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R + DGD ++ NR PS+H+ SM+ VRV+P S+ +N SP DFDGD ++ ++P
Sbjct: 374 RHIVDGDFIIFNRQPSLHKESMMGHRVRVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVP 432
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQML 366
QS R E+N+L + +++ Q L+ + QD+L Y + V LN ++ + +
Sbjct: 433 QSEETRAEVNQLCMVPLNIVSPQRNSPLMGIVQDTLCGIYKICRRDVFLNQGQVMNILLW 492
Query: 367 CD--KKLTPPPSIIKAPSRNNSLWSGKQLFSMLLPSNFDYSFPPN-------GVSVSDGE 519
+ P P+I+K +W+GKQ+ S+++P+ + N G +S GE
Sbjct: 493 VPDWDGIIPQPAILKP----TPVWTGKQIVSLIIPAGLNLVRDKNHNPLDDKGALISGGE 548
Query: 520 L 522
L
Sbjct: 549 L 549
[226][TOP]
>UniRef100_A7EYX3 DNA-directed RNA polymerase n=1 Tax=Sclerotinia sclerotiorum 1980
UF-70 RepID=A7EYX3_SCLS1
Length = 1459
Score = 95.5 bits (236), Expect = 3e-18
Identities = 63/195 (32%), Positives = 101/195 (51%), Gaps = 7/195 (3%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R L DGD VL NR PS+H+ S++S ++ P + +N C+P DFDGD ++ ++P
Sbjct: 462 RHLEDGDIVLFNRQPSLHKLSIMSHYAKIRPWRTF-RLNECVCNPYNADFDGDEMNLHVP 520
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQML 366
Q+ AR E L+ + L ++G ++S +QD +TAAY+L N ++ + +
Sbjct: 521 QTEEARTEAINLMGVKNNLSTPKNGEPIISATQDFITAAYLLSSKE---NFFDRKTFTNI 577
Query: 367 C----DKKL---TPPPSIIKAPSRNNSLWSGKQLFSMLLPSNFDYSFPPNGVSVSDGELT 525
C D L PPP+I+K +LW+GKQ+FS+L+ N + N V +
Sbjct: 578 CMYMVDSNLHLQLPPPAILKP----QALWTGKQVFSILMRPNKQDNILVN-VDAKCRDFV 632
Query: 526 SSFESSGWLRDSECN 570
+ G+ D E N
Sbjct: 633 PNMVPPGYANDMEAN 647
[227][TOP]
>UniRef100_A5H287 DNA-directed RNA polymerase (Fragment) n=1 Tax=Xanthoparmelia
conspersa RepID=A5H287_9LECA
Length = 1000
Score = 95.5 bits (236), Expect = 3e-18
Identities = 59/186 (31%), Positives = 95/186 (51%), Gaps = 14/186 (7%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R + DG+ + NR PS H+ SM+ VRVLP S+ +N +P DFDGD ++ ++P
Sbjct: 362 RHIVDGEYIXFNRQPSXHKESMMGHRVRVLPYSTF-RLNLSVTTPYNADFDGDEMNLHVP 420
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQML 366
QS +R EL +L + R +++ Q L+ + QD+L Y + L ++ + +
Sbjct: 421 QSQESRAELQQLCLVPRNIVSPQKNAPLMGIVQDTLCGIYKICRRDNFLTKEQVMNIMLW 480
Query: 367 CDK--KLTPPPSIIKAPSRNNSLWSGKQLFSMLLPSNF-----------DYSFPPN-GVS 504
+ P P+I+K R W+GKQ+ SM+LP N DY P + G+
Sbjct: 481 VPEWDGTIPQPAILKPTPR----WTGKQIISMVLPKNLNLEETESGSVKDYYAPSDEGLM 536
Query: 505 VSDGEL 522
+ +GEL
Sbjct: 537 IQEGEL 542
[228][TOP]
>UniRef100_O59227 DNA-directed RNA polymerase n=1 Tax=Pyrococcus horikoshii
RepID=O59227_PYRHO
Length = 907
Score = 95.5 bits (236), Expect = 3e-18
Identities = 54/157 (34%), Positives = 86/157 (54%), Gaps = 2/157 (1%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R L DGD VL NR PS+H+ S+++ VRV+P + +N C P DFDGD ++ ++P
Sbjct: 414 RHLVDGDIVLFNRQPSLHRMSIMAHRVRVMPYKTF-RLNLAVCPPYNADFDGDEMNLHVP 472
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQML 366
Q+ A+ E L+ + +I+ + G ++ QD ++ Y+L +G E++Q+ M
Sbjct: 473 QTEEAQAEAKILMEVQNHIISPRYGGPIIGGIQDHISGGYLLTREGAYFTREEVEQMLMF 532
Query: 367 C--DKKLTPPPSIIKAPSRNNSLWSGKQLFSMLLPSN 471
D K P P + LWSGK +FS+LLP +
Sbjct: 533 AGVDIKELPEPDKYE---NGKPLWSGKTIFSLLLPDD 566
[229][TOP]
>UniRef100_B6YT16 DNA-directed RNA polymerase n=1 Tax=Thermococcus onnurineus NA1
RepID=B6YT16_THEON
Length = 905
Score = 95.5 bits (236), Expect = 3e-18
Identities = 54/157 (34%), Positives = 87/157 (55%), Gaps = 2/157 (1%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R L DGD VL NR PS+H+ S+++ VRV+P + +N C P DFDGD ++ ++P
Sbjct: 414 RHLLDGDIVLFNRQPSLHRMSIMAHRVRVMPYKTF-RLNLAVCPPYNADFDGDEMNLHVP 472
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQML 366
Q+ A+ E L+ + +I+ + G L++ QD ++ Y+L +G E++Q+ M
Sbjct: 473 QTEEAQAEAKILMEVQNHIISPRYGGPLIAGIQDHISGGYLLTREGAYFTRSEVEQMLMF 532
Query: 367 C--DKKLTPPPSIIKAPSRNNSLWSGKQLFSMLLPSN 471
D P P ++ LWSGK +FS+LLP +
Sbjct: 533 AGVDVDKLPKPDKVE---NGVELWSGKTIFSLLLPED 566
[230][TOP]
>UniRef100_P11512 DNA-directed RNA polymerase subunit A' n=1 Tax=Sulfolobus
acidocaldarius RepID=RPOA1_SULAC
Length = 880
Score = 95.5 bits (236), Expect = 3e-18
Identities = 58/165 (35%), Positives = 90/165 (54%), Gaps = 2/165 (1%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R L DGD VL NR PS+H+ SM++ VRVLP +N L C P DFDGD ++ ++P
Sbjct: 409 RHLVDGDVVLFNRQPSLHRISMMAHKVRVLP-GRTFRLNLLDCPPYNADFDGDEMNLHVP 467
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQML 366
QS A E EL+ + + +I + G ++ QD ++ AY+L LL + E+ + +
Sbjct: 468 QSEEAIAEARELMLVHKNIITPRYGGPIIGGGQDYISGAYLLSVKTTLLTVEEVATILGV 527
Query: 367 CD--KKLTPPPSIIKAPSRNNSLWSGKQLFSMLLPSNFDYSFPPN 495
D +L P + P ++GKQ+ S+ LP +F++ P N
Sbjct: 528 TDFVGELGEPAILAPKP-----YYTGKQVISLFLPKDFNFHGPAN 567
[231][TOP]
>UniRef100_O02462 DNA-directed RNA polymerase (Fragment) n=1 Tax=Pedetontus saltator
RepID=O02462_9INSE
Length = 722
Score = 95.1 bits (235), Expect = 3e-18
Identities = 53/158 (33%), Positives = 93/158 (58%), Gaps = 3/158 (1%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R + +GD ++ NR P++H+ SM+ V+VLP S+ +N SP DFDGD ++ ++P
Sbjct: 87 RHIREGDLIIFNRQPTLHKMSMMGHRVKVLPWSTF-RMNLSVTSPYNADFDGDEMNLHVP 145
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQM- 363
QS+ R E+ + RQ+I Q+ + ++ + QD+LTA + + V L ++ + M
Sbjct: 146 QSMETRAEVENIHITXRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFLEKEQMMNILMH 205
Query: 364 --LCDKKLTPPPSIIKAPSRNNSLWSGKQLFSMLLPSN 471
+ D K+ P P+I+K +W+GKQ+FS+++P N
Sbjct: 206 LPIWDGKM-PQPAILKP----KPMWTGKQVFSLIIPGN 238
[232][TOP]
>UniRef100_B3NXK5 DNA-directed RNA polymerase n=1 Tax=Drosophila erecta
RepID=B3NXK5_DROER
Length = 1383
Score = 95.1 bits (235), Expect = 3e-18
Identities = 60/164 (36%), Positives = 90/164 (54%), Gaps = 7/164 (4%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R L DGD VL NR PS+H+ S++ +V P N C+P DFDGD ++ ++P
Sbjct: 451 RHLRDGDIVLFNRQPSLHKMSIMCHRAKVQP-QRTFRFNECACTPYNADFDGDEMNLHLP 509
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQ-- 360
Q+ AR E L+ L+ ++G L++ +QD +T Y+L + V L E QL
Sbjct: 510 QTEEARAEALILMGNQSNLVTPKNGEILIAATQDFITGGYLLTQKEVFLTKEEAMQLAAC 569
Query: 361 MLCDKKLT-----PPPSIIKAPSRNNSLWSGKQLFSMLLPSNFD 477
L ++ T PPP+++K P R LW+GKQ+FS+L+ N D
Sbjct: 570 FLSNEDSTMHIKLPPPALLK-PRR---LWTGKQMFSLLMRPNDD 609
[233][TOP]
>UniRef100_Q6FKG9 DNA-directed RNA polymerase n=1 Tax=Candida glabrata
RepID=Q6FKG9_CANGA
Length = 1459
Score = 95.1 bits (235), Expect = 3e-18
Identities = 55/159 (34%), Positives = 90/159 (56%), Gaps = 4/159 (2%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R L DGD VL NR PS+H+ S++S ++ P + +N C+P DFDGD ++ ++P
Sbjct: 464 RHLEDGDVVLFNRQPSLHRLSILSHYAKIRPWRTF-RLNECVCTPYNADFDGDEMNLHVP 522
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQ-LQM 363
Q+ AR E L+ + L+ +SG +++ +QD +T +Y++ + + Q L M
Sbjct: 523 QTEEARAEAINLMGVKNNLLTPKSGEPIIAATQDFITGSYLISHKDSFFDKASLTQLLSM 582
Query: 364 LCDKKL---TPPPSIIKAPSRNNSLWSGKQLFSMLLPSN 471
+ D L PPP+I+K LW+GKQ+FS+L+ N
Sbjct: 583 MSDGSLQFDIPPPAIMKP----CYLWTGKQVFSLLIKPN 617
[234][TOP]
>UniRef100_Q5A164 DNA-directed RNA polymerase n=1 Tax=Candida albicans
RepID=Q5A164_CANAL
Length = 1448
Score = 95.1 bits (235), Expect = 3e-18
Identities = 54/159 (33%), Positives = 90/159 (56%), Gaps = 4/159 (2%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R + DGD VL NR PS+H+ S++S ++ P + +N C+P DFDGD ++ ++P
Sbjct: 460 RHIEDGDVVLFNRQPSLHRLSILSHYAKIRPWRTF-RLNECVCTPYNADFDGDEMNLHVP 518
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLM-EDGVLLNLYEIQQLQM 363
Q+ AR E L+ + L+ +SG +++ +QD +T +Y++ +D +Q L M
Sbjct: 519 QTEEARAEAINLMGVKNNLLTPKSGEPIIAATQDFITGSYLISHKDSFFDRATLVQLLSM 578
Query: 364 LCDKKL---TPPPSIIKAPSRNNSLWSGKQLFSMLLPSN 471
+ D + PPP+I K LW+GKQ+FS+L+ N
Sbjct: 579 MSDADIQFDIPPPTIFKPV----MLWTGKQVFSLLIKPN 613
[235][TOP]
>UniRef100_Q5A0Z3 DNA-directed RNA polymerase n=1 Tax=Candida albicans
RepID=Q5A0Z3_CANAL
Length = 1448
Score = 95.1 bits (235), Expect = 3e-18
Identities = 54/159 (33%), Positives = 90/159 (56%), Gaps = 4/159 (2%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R + DGD VL NR PS+H+ S++S ++ P + +N C+P DFDGD ++ ++P
Sbjct: 460 RHIEDGDVVLFNRQPSLHRLSILSHYAKIRPWRTF-RLNECVCTPYNADFDGDEMNLHVP 518
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLM-EDGVLLNLYEIQQLQM 363
Q+ AR E L+ + L+ +SG +++ +QD +T +Y++ +D +Q L M
Sbjct: 519 QTEEARAEAINLMGVKNNLLTPKSGEPIIAATQDFITGSYLISHKDSFFDRATLVQLLSM 578
Query: 364 LCDKKL---TPPPSIIKAPSRNNSLWSGKQLFSMLLPSN 471
+ D + PPP+I K LW+GKQ+FS+L+ N
Sbjct: 579 MSDADIQFDIPPPTIFKPV----MLWTGKQVFSLLIKPN 613
[236][TOP]
>UniRef100_Q2PYR5 DNA-directed RNA polymerase (Fragment) n=1 Tax=Mortierella
verticillata RepID=Q2PYR5_9FUNG
Length = 1016
Score = 95.1 bits (235), Expect = 3e-18
Identities = 52/159 (32%), Positives = 87/159 (54%), Gaps = 2/159 (1%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R + DGD V+ NR PS+H+ SM+ +RV+P S+ +N SP DFDGD ++ ++P
Sbjct: 361 RHINDGDVVIFNRQPSLHKMSMMGHKIRVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVP 419
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQML 366
QSV R E+ E+ + RQ+++ QS + ++ + QD+L + L + L M
Sbjct: 420 QSVETRAEITEICMVPRQIVSPQSNKPVMGIVQDTLCGVRKFTKRDCFLTKEMVMNLVMW 479
Query: 367 CD--KKLTPPPSIIKAPSRNNSLWSGKQLFSMLLPSNFD 477
+ P P+I+K LW+G+Q+ SM++P +
Sbjct: 480 VPGWEGFLPTPAILKP----KPLWTGRQMLSMIIPKGIN 514
[237][TOP]
>UniRef100_Q0PQ10 DNA-directed RNA polymerase (Fragment) n=1 Tax=Physcia aipolia
RepID=Q0PQ10_9LECA
Length = 1015
Score = 95.1 bits (235), Expect = 3e-18
Identities = 59/183 (32%), Positives = 96/183 (52%), Gaps = 11/183 (6%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R + DGD ++ NR PS+H+ SM+ VRV+P S+ +N SP DFDGD ++ ++P
Sbjct: 368 RHIVDGDFIIFNRQPSLHKESMMGHRVRVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVP 426
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQML 366
QS R E+++L + +++ Q ++ + QD+L Y + V L+ ++ + +
Sbjct: 427 QSEETRAEISQLCMVPLNIVSPQRNWPIMGIVQDTLCGIYKMCRRDVFLSEEQVMNILLW 486
Query: 367 CD--KKLTPPPSIIKAPSRNNSLWSGKQLFSMLLPSNFDY------SFPP---NGVSVSD 513
+ P P+I+K R WSGKQ+ S++LP +Y F P GV V
Sbjct: 487 VPDWDGVIPQPAILKPRPR----WSGKQIISLVLPFTLNYLQADKAGFSPLKDEGVFVDG 542
Query: 514 GEL 522
GEL
Sbjct: 543 GEL 545
[238][TOP]
>UniRef100_Q0PQ03 DNA-directed RNA polymerase (Fragment) n=1 Tax=Pertusaria dactylina
RepID=Q0PQ03_9LECA
Length = 1015
Score = 95.1 bits (235), Expect = 3e-18
Identities = 60/184 (32%), Positives = 97/184 (52%), Gaps = 12/184 (6%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R + DGD ++ NR PS+H+ SM+ VRV+P S+ +N SP DFDGD ++ ++P
Sbjct: 369 RHIVDGDYIIFNRQPSLHKESMMGHRVRVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVP 427
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQML 366
QS R E+++L + +++ Q L+ + QD+L Y + V L +I + +
Sbjct: 428 QSEETRAEVSQLCMVPLNIVSPQRNAPLMGIVQDTLCGIYKICRRDVFLTKEQIMNVLLW 487
Query: 367 CD--KKLTPPPSIIKAPSRNNSLWSGKQLFSMLLPSNFDY-------SFPP---NGVSVS 510
+ P P+IIK + W+GKQ+ S+++P + SF P +GV VS
Sbjct: 488 VPDWDGVIPQPAIIKPRPK----WTGKQIISLVIPEGLNLIRKDKKESFSPINDDGVFVS 543
Query: 511 DGEL 522
GEL
Sbjct: 544 GGEL 547
[239][TOP]
>UniRef100_C5MI79 DNA-directed RNA polymerase (Fragment) n=1 Tax=Candida tropicalis
MYA-3404 RepID=C5MI79_CANTT
Length = 1159
Score = 95.1 bits (235), Expect = 3e-18
Identities = 54/159 (33%), Positives = 89/159 (55%), Gaps = 4/159 (2%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R + DGD VL NR PS+H+ S++S +V P + +N C+P DFDGD ++ ++P
Sbjct: 460 RHIEDGDVVLFNRQPSLHRLSILSHYAKVRPWRTF-RLNECVCTPYNADFDGDEMNLHVP 518
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQ-LQM 363
Q+ AR E L+ + L+ +SG +++ +QD +T +Y++ + + Q L M
Sbjct: 519 QTEEARAEAINLMGVKNNLLTPKSGEPIIAATQDFITGSYLISHKDSFFDRASLSQLLSM 578
Query: 364 LCDKKL---TPPPSIIKAPSRNNSLWSGKQLFSMLLPSN 471
+ D + PPP+I K LW+GKQ+FS+L+ N
Sbjct: 579 MSDANIQFDIPPPAIFKPV----MLWTGKQVFSLLIKPN 613
[240][TOP]
>UniRef100_C4YGE6 DNA-directed RNA polymerase n=1 Tax=Candida albicans
RepID=C4YGE6_CANAL
Length = 1448
Score = 95.1 bits (235), Expect = 3e-18
Identities = 54/159 (33%), Positives = 90/159 (56%), Gaps = 4/159 (2%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R + DGD VL NR PS+H+ S++S ++ P + +N C+P DFDGD ++ ++P
Sbjct: 460 RHIEDGDVVLFNRQPSLHRLSILSHYAKIRPWRTF-RLNECVCTPYNADFDGDEMNLHVP 518
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLM-EDGVLLNLYEIQQLQM 363
Q+ AR E L+ + L+ +SG +++ +QD +T +Y++ +D +Q L M
Sbjct: 519 QTEEARAEAINLMGVKNNLLTPKSGEPIIAATQDFITGSYLISHKDSFFDRATLVQLLSM 578
Query: 364 LCDKKL---TPPPSIIKAPSRNNSLWSGKQLFSMLLPSN 471
+ D + PPP+I K LW+GKQ+FS+L+ N
Sbjct: 579 MSDADIQFDIPPPTIFKPV----MLWTGKQVFSLLIKPN 613
[241][TOP]
>UniRef100_B9WF61 DNA-directed RNA polymerase n=1 Tax=Candida dubliniensis CD36
RepID=B9WF61_CANDC
Length = 1448
Score = 95.1 bits (235), Expect = 3e-18
Identities = 54/159 (33%), Positives = 90/159 (56%), Gaps = 4/159 (2%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R + DGD VL NR PS+H+ S++S ++ P + +N C+P DFDGD ++ ++P
Sbjct: 460 RHIEDGDVVLFNRQPSLHRLSILSHYAKIRPWRTF-RLNECVCTPYNADFDGDEMNLHVP 518
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLM-EDGVLLNLYEIQQLQM 363
Q+ AR E L+ + L+ +SG +++ +QD +T +Y++ +D +Q L M
Sbjct: 519 QTEEARAEAINLMGVKNNLLTPKSGEPIIAATQDFITGSYLISHKDSFFDRATLVQLLSM 578
Query: 364 LCDKKL---TPPPSIIKAPSRNNSLWSGKQLFSMLLPSN 471
+ D + PPP+I K LW+GKQ+FS+L+ N
Sbjct: 579 MSDADIQFDIPPPTIFKPV----MLWTGKQVFSLLIKPN 613
[242][TOP]
>UniRef100_A6QYA7 DNA-directed RNA polymerase n=1 Tax=Ajellomyces capsulatus NAm1
RepID=A6QYA7_AJECN
Length = 1747
Score = 95.1 bits (235), Expect = 3e-18
Identities = 53/155 (34%), Positives = 87/155 (56%), Gaps = 2/155 (1%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R + DGD +L NR PS+H+ SM+ +RV+P S+ +N +P DFDGD ++ ++P
Sbjct: 452 RHIVDGDVILFNRQPSLHKESMMGHRIRVMPYSTF-RLNLSVTTPYNADFDGDEMNLHVP 510
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQML 366
QS AR EL++L + Q+++ Q L+ + QD+L Y + V L ++ + +
Sbjct: 511 QSEEARAELSQLCMVPLQIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLTKEQVMNILLW 570
Query: 367 CD--KKLTPPPSIIKAPSRNNSLWSGKQLFSMLLP 465
+ P P+I+K R W+GKQ+ SM+LP
Sbjct: 571 VPDWDGVIPQPAILKPRPR----WTGKQMISMVLP 601
[243][TOP]
>UniRef100_A5H297 DNA-directed RNA polymerase (Fragment) n=1 Tax=Xanthoria polycarpa
RepID=A5H297_9LECA
Length = 1020
Score = 95.1 bits (235), Expect = 3e-18
Identities = 58/189 (30%), Positives = 98/189 (51%), Gaps = 17/189 (8%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R + DGD ++ NR PS+H+ SM+ VRV+P S+ +N SP DFDGD ++ ++P
Sbjct: 369 RHIVDGDYIIFNRQPSLHKESMMGHRVRVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVP 427
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQML 366
QS R E+++L + +++ Q ++ + QD+L Y + V+L+ ++ + +
Sbjct: 428 QSEETRAEISQLCMVSLNIVSPQRNWPIMGIVQDTLCGIYKMCRRDVVLSEAQVMNILLW 487
Query: 367 CD--KKLTPPPSIIKAPSRNNSLWSGKQLFSMLLPSNFDYS------------FPP---N 495
+ P P+I+K R W+GKQ+ S++LP+ +Y F P
Sbjct: 488 VPDWDGVIPQPAILKPQPR----WTGKQIISLILPATLNYRQIEKEKKTEKPLFSPLKDE 543
Query: 496 GVSVSDGEL 522
GV V GEL
Sbjct: 544 GVMVDSGEL 552
[244][TOP]
>UniRef100_A5H293 DNA-directed RNA polymerase (Fragment) n=1 Tax=Degelia plumbea
RepID=A5H293_9LECA
Length = 1002
Score = 95.1 bits (235), Expect = 3e-18
Identities = 58/183 (31%), Positives = 99/183 (54%), Gaps = 11/183 (6%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R + DGD ++ NR PS+H+ SM+ VRV+P S+ +N SP DFDGD ++ ++P
Sbjct: 369 RHIIDGDFIIFNRQPSLHKESMMGHRVRVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVP 427
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQML 366
QS R E+N+L + +++ Q L+ + QD+L Y L V L+ ++ + +
Sbjct: 428 QSEETRAEINQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKLCRRDVFLSKEQVMNILLW 487
Query: 367 CD--KKLTPPPSIIKAPSRNNSLWSGKQLFSMLLPSNFDYS------FPP---NGVSVSD 513
+ P P+I+K + W+GKQ+ S+++PS + + F P +G+ VS
Sbjct: 488 IPDWDGILPQPAILKPRPK----WTGKQIISLVIPSGLNLTRAGGEGFSPLNDDGLLVSG 543
Query: 514 GEL 522
G+L
Sbjct: 544 GKL 546
[245][TOP]
>UniRef100_P31813 DNA-directed RNA polymerase subunit A' n=1 Tax=Thermococcus celer
RepID=RPOA1_THECE
Length = 905
Score = 95.1 bits (235), Expect = 3e-18
Identities = 54/157 (34%), Positives = 87/157 (55%), Gaps = 2/157 (1%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R L DGD VL NR PS+H+ S+++ VRV+P + +N C P DFDGD ++ ++P
Sbjct: 414 RHLLDGDVVLFNRQPSLHRMSIMAHRVRVMPYRTF-RLNLSVCPPYNADFDGDEMNLHVP 472
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQML 366
Q+ A+ E L+ + +I+ + G L++ QD ++ Y+L +G E++Q+ M
Sbjct: 473 QTEEAQAEAKILMEVQNHIISPRYGGPLIAGIQDHISGGYLLTREGAYFERTEVEQMLMF 532
Query: 367 C--DKKLTPPPSIIKAPSRNNSLWSGKQLFSMLLPSN 471
D P P ++ LWSGK +FS+LLP +
Sbjct: 533 AGVDVDRLPEPDKVE---NGVELWSGKTIFSLLLPKD 566
[246][TOP]
>UniRef100_B8BQ02 DNA-directed RNA polymerase n=1 Tax=Thalassiosira pseudonana
CCMP1335 RepID=B8BQ02_THAPS
Length = 1627
Score = 94.7 bits (234), Expect = 4e-18
Identities = 57/155 (36%), Positives = 87/155 (56%), Gaps = 2/155 (1%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R L DGD VL NR PS+H+ S++ +VL S+ +N C SP DFDGD ++ ++P
Sbjct: 439 RHLRDGDIVLFNRQPSLHKMSIMGHMAKVLDWSTF-RLNLSCTSPYNADFDGDEMNLHVP 497
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQML 366
QS+ AR E ++ R +++GQS R ++ + QDSL A + + V + + + M
Sbjct: 498 QSLPARAEAELMMHSPRVIVSGQSNRPVMGIVQDSLLAVQKMTKRDVFVKKDLMMNILMW 557
Query: 367 CD--KKLTPPPSIIKAPSRNNSLWSGKQLFSMLLP 465
+ PPP+I R LW+GKQ+ SM+LP
Sbjct: 558 VEDWDGRIPPPAIY----RPEELWTGKQIMSMILP 588
[247][TOP]
>UniRef100_Q27095 DNA-directed RNA polymerase n=1 Tax=Trichomonas vaginalis
RepID=Q27095_TRIVA
Length = 1661
Score = 94.7 bits (234), Expect = 4e-18
Identities = 57/168 (33%), Positives = 90/168 (53%), Gaps = 5/168 (2%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R L D D V+ NR PS+H+ SM+ ++ +NP +P DFDGD ++ ++P
Sbjct: 447 RHLRDDDIVIFNRQPSLHKMSMMGHRALIMS-GRTFRLNPCDTTPYNADFDGDEMNLHVP 505
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQM- 363
QS AR E+ ++A+ +Q+I+ Q+ + ++ L QD+L +L + L ++ L M
Sbjct: 506 QSQTARTEVRHIMAVPKQIISPQANKPVIGLVQDALLGCRLLSKRDTFLTRNQVMNLMMW 565
Query: 364 --LCDKKLTPPPSIIKAPSRNNSLWSGKQLFSMLLP--SNFDYSFPPN 495
+ PPP I+K LWSGKQ+FS+ LP S+ YS N
Sbjct: 566 LPTTKDTILPPPCILKPV----QLWSGKQVFSLFLPKISHNSYSQDAN 609
[248][TOP]
>UniRef100_C4QEL8 DNA-directed RNA polymerase n=1 Tax=Schistosoma mansoni
RepID=C4QEL8_SCHMA
Length = 1785
Score = 94.7 bits (234), Expect = 4e-18
Identities = 57/155 (36%), Positives = 91/155 (58%), Gaps = 2/155 (1%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R + + D V+ NR P++H+ SM+ V+VLP S+ +N SP DFDGD ++ ++P
Sbjct: 338 RHMLNDDFVIFNRQPTLHKMSMMCHRVKVLPWSTF-RLNLSVTSPYNADFDGDEMNLHLP 396
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQML 366
QSV + E+++L + R +I Q+ + ++ + QD+LTA + + V LN E+ L M
Sbjct: 397 QSVETKAEISQLARVSRLVITPQANKPVMGIVQDTLTAVNKMTQRDVFLNRSEMMNLLMY 456
Query: 367 CD--KKLTPPPSIIKAPSRNNSLWSGKQLFSMLLP 465
P P+I K P R LW+GKQLFS+++P
Sbjct: 457 LPTWNGRMPKPAIYK-PQR---LWTGKQLFSLVIP 487
[249][TOP]
>UniRef100_Q7SDN0 DNA-directed RNA polymerase n=1 Tax=Neurospora crassa
RepID=Q7SDN0_NEUCR
Length = 1752
Score = 94.7 bits (234), Expect = 4e-18
Identities = 53/155 (34%), Positives = 86/155 (55%), Gaps = 2/155 (1%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R L DGD ++ NR PS+H+ SM+ V+V+P S+ +N SP DFDGD ++ ++P
Sbjct: 448 RHLIDGDYIIFNRQPSLHKESMMGHRVKVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVP 506
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQML 366
Q+ R E+ EL + +++ Q L+ + QD+L AY L V L E+ + +
Sbjct: 507 QTEETRAEVKELCMVPLNIVSPQRNGPLMGIVQDTLAGAYKLCRRDVFLTKEEVMNIMLW 566
Query: 367 CDK--KLTPPPSIIKAPSRNNSLWSGKQLFSMLLP 465
+ + P P+I+K R W+GKQ+ SM++P
Sbjct: 567 VPEWDGIIPVPAILKPRPR----WTGKQIISMVVP 597
[250][TOP]
>UniRef100_Q1DVM7 DNA-directed RNA polymerase n=1 Tax=Coccidioides immitis
RepID=Q1DVM7_COCIM
Length = 1430
Score = 94.7 bits (234), Expect = 4e-18
Identities = 56/159 (35%), Positives = 86/159 (54%), Gaps = 7/159 (4%)
Frame = +1
Query: 7 RPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIP 186
R L DGD VL NR PS+H+ S++S V+V P +N C+P DFDGD ++ ++P
Sbjct: 466 RHLEDGDIVLFNRQPSLHKLSILSHFVKVRP-HRTFRLNECVCNPYNADFDGDEMNLHVP 524
Query: 187 QSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQML 366
Q+ AR E EL+ + L ++G +++ QD +TAAY+L N Y+
Sbjct: 525 QTEEARAEAMELMGVKNNLATPKNGEPIIAAIQDFITAAYLLSSKD---NFYDRGSFTQT 581
Query: 367 CDKKL-------TPPPSIIKAPSRNNSLWSGKQLFSMLL 462
C L PPP+++K LW+GKQ+F++L+
Sbjct: 582 CGYMLQPGTKFDLPPPAVLKP----QMLWTGKQVFNVLM 616