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[1][TOP]
>UniRef100_Q2MGQ5 RNA polymerase, dimerisation n=1 Tax=Medicago truncatula
RepID=Q2MGQ5_MEDTR
Length = 318
Score = 140 bits (353), Expect = 4e-32
Identities = 71/76 (93%), Positives = 75/76 (98%)
Frame = -1
Query: 399 VIKKAEAMGKPGLVEITAKQDSFIFIVETTGAVKASQLVLNAIEILKQKLDAVRLSEDTV 220
VIKKAEAMGKPGL+EITAKQDSFIF VE+TGAVKASQL+LN+IEILKQKLDAVRLSEDTV
Sbjct: 243 VIKKAEAMGKPGLIEITAKQDSFIFTVESTGAVKASQLLLNSIEILKQKLDAVRLSEDTV 302
Query: 219 EADDQFGELGAHMRGG 172
EADDQFGELGAHMRGG
Sbjct: 303 EADDQFGELGAHMRGG 318
[2][TOP]
>UniRef100_A7P9N6 Chromosome chr3 scaffold_8, whole genome shotgun sequence n=1
Tax=Vitis vinifera RepID=A7P9N6_VITVI
Length = 318
Score = 136 bits (343), Expect = 6e-31
Identities = 68/76 (89%), Positives = 74/76 (97%)
Frame = -1
Query: 399 VIKKAEAMGKPGLVEITAKQDSFIFIVETTGAVKASQLVLNAIEILKQKLDAVRLSEDTV 220
V+KKAEAMGKPGLVEI AK+DSFIF VE+TGA+KASQLVLNAI++LKQKLDAVRLSEDTV
Sbjct: 243 VLKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIDVLKQKLDAVRLSEDTV 302
Query: 219 EADDQFGELGAHMRGG 172
EADDQFGELGAHMRGG
Sbjct: 303 EADDQFGELGAHMRGG 318
[3][TOP]
>UniRef100_A5B429 Putative uncharacterized protein n=1 Tax=Vitis vinifera
RepID=A5B429_VITVI
Length = 318
Score = 136 bits (343), Expect = 6e-31
Identities = 68/76 (89%), Positives = 74/76 (97%)
Frame = -1
Query: 399 VIKKAEAMGKPGLVEITAKQDSFIFIVETTGAVKASQLVLNAIEILKQKLDAVRLSEDTV 220
V+KKAEAMGKPGLVEI AK+DSFIF VE+TGA+KASQLVLNAI++LKQKLDAVRLSEDTV
Sbjct: 243 VLKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIDVLKQKLDAVRLSEDTV 302
Query: 219 EADDQFGELGAHMRGG 172
EADDQFGELGAHMRGG
Sbjct: 303 EADDQFGELGAHMRGG 318
[4][TOP]
>UniRef100_B9RYB6 DNA-directed RNA polymerase II subunit, putative n=1 Tax=Ricinus
communis RepID=B9RYB6_RICCO
Length = 318
Score = 136 bits (342), Expect = 8e-31
Identities = 69/76 (90%), Positives = 73/76 (96%)
Frame = -1
Query: 399 VIKKAEAMGKPGLVEITAKQDSFIFIVETTGAVKASQLVLNAIEILKQKLDAVRLSEDTV 220
VIKKAE+MGKPGLV I AK+DSFIF VE+TGA+KASQLVLNAIEILKQKLDAVRLSEDTV
Sbjct: 243 VIKKAESMGKPGLVNIQAKEDSFIFTVESTGAIKASQLVLNAIEILKQKLDAVRLSEDTV 302
Query: 219 EADDQFGELGAHMRGG 172
EADDQFGELGAHMRGG
Sbjct: 303 EADDQFGELGAHMRGG 318
[5][TOP]
>UniRef100_Q8LAJ1 DNA-directed RNA polymerase II, third largest subunit n=1
Tax=Arabidopsis thaliana RepID=Q8LAJ1_ARATH
Length = 319
Score = 134 bits (337), Expect = 3e-30
Identities = 67/76 (88%), Positives = 73/76 (96%)
Frame = -1
Query: 399 VIKKAEAMGKPGLVEITAKQDSFIFIVETTGAVKASQLVLNAIEILKQKLDAVRLSEDTV 220
VIKKAEAMGKPGL+EI+ K DSFIF VE+TGAVKASQLVLNAI++LKQKLDAVRLS+DTV
Sbjct: 244 VIKKAEAMGKPGLIEISPKDDSFIFTVESTGAVKASQLVLNAIDLLKQKLDAVRLSDDTV 303
Query: 219 EADDQFGELGAHMRGG 172
EADDQFGELGAHMRGG
Sbjct: 304 EADDQFGELGAHMRGG 319
[6][TOP]
>UniRef100_Q39211 DNA-directed RNA polymerase II subunit RPB3-A n=1 Tax=Arabidopsis
thaliana RepID=RPB3A_ARATH
Length = 319
Score = 134 bits (337), Expect = 3e-30
Identities = 67/76 (88%), Positives = 73/76 (96%)
Frame = -1
Query: 399 VIKKAEAMGKPGLVEITAKQDSFIFIVETTGAVKASQLVLNAIEILKQKLDAVRLSEDTV 220
VIKKAEAMGKPGL+EI+ K DSFIF VE+TGAVKASQLVLNAI++LKQKLDAVRLS+DTV
Sbjct: 244 VIKKAEAMGKPGLIEISPKDDSFIFTVESTGAVKASQLVLNAIDLLKQKLDAVRLSDDTV 303
Query: 219 EADDQFGELGAHMRGG 172
EADDQFGELGAHMRGG
Sbjct: 304 EADDQFGELGAHMRGG 319
[7][TOP]
>UniRef100_B9HS44 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9HS44_POPTR
Length = 346
Score = 127 bits (319), Expect = 4e-28
Identities = 65/74 (87%), Positives = 70/74 (94%)
Frame = -1
Query: 399 VIKKAEAMGKPGLVEITAKQDSFIFIVETTGAVKASQLVLNAIEILKQKLDAVRLSEDTV 220
VIKKAEAMGK GL++I AK+DSFIF VE+TGAVKASQLVLNAIEILKQKLDAVRLS+DTV
Sbjct: 248 VIKKAEAMGKRGLIDIRAKEDSFIFTVESTGAVKASQLVLNAIEILKQKLDAVRLSDDTV 307
Query: 219 EADDQFGELGAHMR 178
EADDQFGELG HMR
Sbjct: 308 EADDQFGELGVHMR 321
[8][TOP]
>UniRef100_A9SHD1 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens
RepID=A9SHD1_PHYPA
Length = 324
Score = 127 bits (318), Expect = 5e-28
Identities = 64/76 (84%), Positives = 70/76 (92%)
Frame = -1
Query: 399 VIKKAEAMGKPGLVEITAKQDSFIFIVETTGAVKASQLVLNAIEILKQKLDAVRLSEDTV 220
V+KKAEAMGKPGLVEI +K+DSFIF VE+TGA+KASQ+ LNAIEILK KLDAVRLS DT
Sbjct: 247 VLKKAEAMGKPGLVEIYSKEDSFIFTVESTGAIKASQMFLNAIEILKSKLDAVRLSFDTE 306
Query: 219 EADDQFGELGAHMRGG 172
EADDQFGELGAHMRGG
Sbjct: 307 EADDQFGELGAHMRGG 322
[9][TOP]
>UniRef100_Q39212 DNA-directed RNA polymerase II subunit RPB3-B n=2 Tax=Arabidopsis
thaliana RepID=RPB3B_ARATH
Length = 319
Score = 127 bits (318), Expect = 5e-28
Identities = 63/76 (82%), Positives = 71/76 (93%)
Frame = -1
Query: 399 VIKKAEAMGKPGLVEITAKQDSFIFIVETTGAVKASQLVLNAIEILKQKLDAVRLSEDTV 220
VIKKAEAMGKPGL+EI K DSF+F VE+TGA+KASQLVLNAI+ILKQKLDA+RLS++TV
Sbjct: 244 VIKKAEAMGKPGLIEIHPKHDSFVFTVESTGALKASQLVLNAIDILKQKLDAIRLSDNTV 303
Query: 219 EADDQFGELGAHMRGG 172
EADDQFGELGAHMR G
Sbjct: 304 EADDQFGELGAHMREG 319
[10][TOP]
>UniRef100_B9GHC8 Predicted protein (Fragment) n=1 Tax=Populus trichocarpa
RepID=B9GHC8_POPTR
Length = 87
Score = 110 bits (275), Expect = 5e-23
Identities = 55/71 (77%), Positives = 65/71 (91%)
Frame = -1
Query: 399 VIKKAEAMGKPGLVEITAKQDSFIFIVETTGAVKASQLVLNAIEILKQKLDAVRLSEDTV 220
VIKKAEA GKPG+++I AK+D+F+FIV +TGA+KASQLVL+AIEILKQKLDAVRLS+D V
Sbjct: 15 VIKKAEAKGKPGIIDIRAKEDNFVFIVGSTGAIKASQLVLDAIEILKQKLDAVRLSDDIV 74
Query: 219 EADDQFGELGA 187
EADDQF EL A
Sbjct: 75 EADDQFDELSA 85
[11][TOP]
>UniRef100_Q6YX88 Os09g0110400 protein n=2 Tax=Oryza sativa RepID=Q6YX88_ORYSJ
Length = 330
Score = 102 bits (253), Expect = 2e-20
Identities = 51/76 (67%), Positives = 62/76 (81%)
Frame = -1
Query: 399 VIKKAEAMGKPGLVEITAKQDSFIFIVETTGAVKASQLVLNAIEILKQKLDAVRLSEDTV 220
VIKKA+AMGKPGL+EI AK+DSFIF VETTGA+ A +L++NAI +L+QKLDAVRL +D
Sbjct: 259 VIKKADAMGKPGLIEINAKEDSFIFTVETTGAITAYELIMNAITVLRQKLDAVRLQDD-- 316
Query: 219 EADDQFGELGAHMRGG 172
D GELGAH+ GG
Sbjct: 317 --DADLGELGAHLVGG 330
[12][TOP]
>UniRef100_B6TCC3 DNA-directed RNA polymerase II 36 kDa polypeptide A n=1 Tax=Zea
mays RepID=B6TCC3_MAIZE
Length = 328
Score = 99.8 bits (247), Expect = 9e-20
Identities = 50/75 (66%), Positives = 61/75 (81%)
Frame = -1
Query: 399 VIKKAEAMGKPGLVEITAKQDSFIFIVETTGAVKASQLVLNAIEILKQKLDAVRLSEDTV 220
VIK AEA+GKPGLVEITAK+DSF+F VETTGA+ A +L++NAI +L+QKLDAVRL +D
Sbjct: 257 VIKHAEAIGKPGLVEITAKEDSFVFTVETTGAITAYELIMNAITVLRQKLDAVRLQDD-- 314
Query: 219 EADDQFGELGAHMRG 175
D GELGAH+ G
Sbjct: 315 --DGDLGELGAHLGG 327
[13][TOP]
>UniRef100_C5X7D7 Putative uncharacterized protein Sb02g014460 n=1 Tax=Sorghum
bicolor RepID=C5X7D7_SORBI
Length = 328
Score = 98.6 bits (244), Expect = 2e-19
Identities = 50/75 (66%), Positives = 60/75 (80%)
Frame = -1
Query: 399 VIKKAEAMGKPGLVEITAKQDSFIFIVETTGAVKASQLVLNAIEILKQKLDAVRLSEDTV 220
VIK AEA+GKPGLVEI AK+DSFIF VETTGA+ A +L++NAI +L+QKLDAVRL +D
Sbjct: 257 VIKHAEALGKPGLVEINAKEDSFIFTVETTGAITAYELIMNAITVLRQKLDAVRLQDD-- 314
Query: 219 EADDQFGELGAHMRG 175
D GELGAH+ G
Sbjct: 315 --DGDLGELGAHLGG 327
[14][TOP]
>UniRef100_C1MVZ5 Predicted protein n=1 Tax=Micromonas pusilla CCMP1545
RepID=C1MVZ5_9CHLO
Length = 333
Score = 67.0 bits (162), Expect = 6e-10
Identities = 29/62 (46%), Positives = 49/62 (79%)
Frame = -1
Query: 396 IKKAEAMGKPGLVEITAKQDSFIFIVETTGAVKASQLVLNAIEILKQKLDAVRLSEDTVE 217
+KKAE +GKPGLV+I AK+D+F F VE+TGA++ ++V+NA+++L++K++ R D +E
Sbjct: 265 LKKAEELGKPGLVDIRAKEDAFHFTVESTGALRPEEIVVNALKVLERKMEVTRGELDILE 324
Query: 216 AD 211
+
Sbjct: 325 RE 326
[15][TOP]
>UniRef100_C1EBY2 Dna-directed RNA polymerase II polypeptide a n=1 Tax=Micromonas sp.
RCC299 RepID=C1EBY2_9CHLO
Length = 331
Score = 64.3 bits (155), Expect = 4e-09
Identities = 30/62 (48%), Positives = 46/62 (74%)
Frame = -1
Query: 396 IKKAEAMGKPGLVEITAKQDSFIFIVETTGAVKASQLVLNAIEILKQKLDAVRLSEDTVE 217
+K AE MGKPGLV+I AK+D+F+F VE+TGA+ +VLNA+++L KL+ + D V+
Sbjct: 263 LKWAEDMGKPGLVDIRAKEDTFLFTVESTGALPPETIVLNALKVLDTKLEMTKSELDIVK 322
Query: 216 AD 211
++
Sbjct: 323 SE 324
[16][TOP]
>UniRef100_Q54DH7 DNA-directed RNA polymerase II subunit rpb3 n=1 Tax=Dictyostelium
discoideum RepID=RPB3_DICDI
Length = 302
Score = 59.3 bits (142), Expect = 1e-07
Identities = 28/52 (53%), Positives = 39/52 (75%)
Frame = -1
Query: 393 KKAEAMGKPGLVEITAKQDSFIFIVETTGAVKASQLVLNAIEILKQKLDAVR 238
KKAE+ GKP LV + KQD FIF VE++GA+K +VL AI+I+K+KL ++
Sbjct: 243 KKAESFGKPDLVHLEQKQDKFIFTVESSGALKPEDIVLYAIQIIKRKLTDIQ 294
[17][TOP]
>UniRef100_A4RSP9 DNA-directed RNA polymerase II subunit 3 n=1 Tax=Ostreococcus
lucimarinus CCE9901 RepID=A4RSP9_OSTLU
Length = 318
Score = 58.9 bits (141), Expect = 2e-07
Identities = 26/56 (46%), Positives = 39/56 (69%)
Frame = -1
Query: 399 VIKKAEAMGKPGLVEITAKQDSFIFIVETTGAVKASQLVLNAIEILKQKLDAVRLS 232
V+KK +GKPGL+++ D F FIVE+TG +K ++VL A+ IL+ KLD + +S
Sbjct: 254 VMKKVNELGKPGLIDVRPGLDCFTFIVESTGVLKVEEVVLQAVHILQSKLDTIGVS 309
[18][TOP]
>UniRef100_Q01F02 Rpb3 DNA-directed RNA polymerase II subunit 3 (IC) n=1
Tax=Ostreococcus tauri RepID=Q01F02_OSTTA
Length = 301
Score = 57.4 bits (137), Expect = 5e-07
Identities = 28/64 (43%), Positives = 42/64 (65%)
Frame = -1
Query: 399 VIKKAEAMGKPGLVEITAKQDSFIFIVETTGAVKASQLVLNAIEILKQKLDAVRLSEDTV 220
++KK MGK GL++I DSF F VE+TG + A ++VL A+ IL+ KLD V D +
Sbjct: 237 IVKKVNEMGKHGLIDIRPCFDSFTFHVESTGVLDAEEIVLQAVHILQTKLDTVGGELDMI 296
Query: 219 EADD 208
E+++
Sbjct: 297 ESEN 300
[19][TOP]
>UniRef100_A9SM40 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens
RepID=A9SM40_PHYPA
Length = 385
Score = 55.8 bits (133), Expect = 1e-06
Identities = 27/56 (48%), Positives = 41/56 (73%)
Frame = -1
Query: 393 KKAEAMGKPGLVEITAKQDSFIFIVETTGAVKASQLVLNAIEILKQKLDAVRLSED 226
+ EA G LVEI + DSFIF VE+TGA+ +++ ++A+ ILK+KL A+R++ED
Sbjct: 275 RNVEAAGMAELVEIAWRDDSFIFSVESTGAIAPAKICVDAVNILKKKLLALRIAED 330