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[1][TOP]
>UniRef100_UPI00005DC295 NRPC2; DNA binding / DNA-directed RNA polymerase/ ribonucleoside
binding n=1 Tax=Arabidopsis thaliana RepID=UPI00005DC295
Length = 1161
Score = 51.6 bits (122), Expect(2) = 2e-13
Identities = 23/27 (85%), Positives = 25/27 (92%)
Frame = -3
Query: 309 MKLPYACKLLIQELQSMNIVPRLKLAD 229
MKLPYACKLL QELQSMN+VPRLKL +
Sbjct: 1134 MKLPYACKLLFQELQSMNVVPRLKLTE 1160
Score = 47.0 bits (110), Expect(2) = 2e-13
Identities = 19/23 (82%), Positives = 21/23 (91%)
Frame = -1
Query: 413 QVQVCRSCGLLGYYNYKLKIGVC 345
+VQVCR+CGLLGYYNYKLK VC
Sbjct: 1100 EVQVCRACGLLGYYNYKLKKAVC 1122
[2][TOP]
>UniRef100_B9IDF9 DNA-directed RNA polymerase (Fragment) n=1 Tax=Populus trichocarpa
RepID=B9IDF9_POPTR
Length = 1141
Score = 55.5 bits (132), Expect(2) = 5e-13
Identities = 27/37 (72%), Positives = 30/37 (81%)
Frame = -3
Query: 339 TLRMETRFPNMKLPYACKLLIQELQSMNIVPRLKLAD 229
T + + MKLPYACKLLIQELQSMNIVPRLKLA+
Sbjct: 1104 TCKNGDKVSTMKLPYACKLLIQELQSMNIVPRLKLAE 1140
Score = 42.0 bits (97), Expect(2) = 5e-13
Identities = 16/23 (69%), Positives = 19/23 (82%)
Frame = -1
Query: 413 QVQVCRSCGLLGYYNYKLKIGVC 345
+ QVCR+CGLLGYYN KLK +C
Sbjct: 1080 EAQVCRACGLLGYYNQKLKAAMC 1102
[3][TOP]
>UniRef100_A9RNX6 DNA-directed RNA polymerase n=1 Tax=Physcomitrella patens subsp.
patens RepID=A9RNX6_PHYPA
Length = 1135
Score = 55.5 bits (132), Expect(2) = 2e-12
Identities = 27/41 (65%), Positives = 29/41 (70%)
Frame = -3
Query: 351 CLSITLRMETRFPNMKLPYACKLLIQELQSMNIVPRLKLAD 229
CL T + MKLPYACKLL QELQSMNIVPRL LA+
Sbjct: 1094 CLCSTCKSGDNIATMKLPYACKLLFQELQSMNIVPRLTLAE 1134
Score = 40.0 bits (92), Expect(2) = 2e-12
Identities = 14/23 (60%), Positives = 20/23 (86%)
Frame = -1
Query: 413 QVQVCRSCGLLGYYNYKLKIGVC 345
Q+QVC CG++GYY++KLKI +C
Sbjct: 1074 QIQVCTKCGMIGYYHHKLKICLC 1096
[4][TOP]
>UniRef100_Q84R88 DNA-directed RNA polymerase n=1 Tax=Oryza sativa Japonica Group
RepID=Q84R88_ORYSJ
Length = 1174
Score = 48.5 bits (114), Expect(2) = 9e-12
Identities = 20/27 (74%), Positives = 25/27 (92%)
Frame = -3
Query: 309 MKLPYACKLLIQELQSMNIVPRLKLAD 229
M++PYACKLL QELQ+MN+VPRLKL +
Sbjct: 1147 MRMPYACKLLFQELQAMNVVPRLKLTE 1173
Score = 44.7 bits (104), Expect(2) = 9e-12
Identities = 18/23 (78%), Positives = 19/23 (82%)
Frame = -1
Query: 413 QVQVCRSCGLLGYYNYKLKIGVC 345
QVQVCR CGLLGYYN+KLK C
Sbjct: 1113 QVQVCRKCGLLGYYNHKLKASYC 1135
[5][TOP]
>UniRef100_Q10JZ3 DNA-directed RNA polymerase n=1 Tax=Oryza sativa Japonica Group
RepID=Q10JZ3_ORYSJ
Length = 1155
Score = 48.5 bits (114), Expect(2) = 9e-12
Identities = 20/27 (74%), Positives = 25/27 (92%)
Frame = -3
Query: 309 MKLPYACKLLIQELQSMNIVPRLKLAD 229
M++PYACKLL QELQ+MN+VPRLKL +
Sbjct: 1128 MRMPYACKLLFQELQAMNVVPRLKLTE 1154
Score = 44.7 bits (104), Expect(2) = 9e-12
Identities = 18/23 (78%), Positives = 19/23 (82%)
Frame = -1
Query: 413 QVQVCRSCGLLGYYNYKLKIGVC 345
QVQVCR CGLLGYYN+KLK C
Sbjct: 1094 QVQVCRKCGLLGYYNHKLKASYC 1116
[6][TOP]
>UniRef100_B8AR02 DNA-directed RNA polymerase n=1 Tax=Oryza sativa Indica Group
RepID=B8AR02_ORYSI
Length = 1117
Score = 48.5 bits (114), Expect(2) = 9e-12
Identities = 20/27 (74%), Positives = 25/27 (92%)
Frame = -3
Query: 309 MKLPYACKLLIQELQSMNIVPRLKLAD 229
M++PYACKLL QELQ+MN+VPRLKL +
Sbjct: 1090 MRMPYACKLLFQELQAMNVVPRLKLTE 1116
Score = 44.7 bits (104), Expect(2) = 9e-12
Identities = 18/23 (78%), Positives = 19/23 (82%)
Frame = -1
Query: 413 QVQVCRSCGLLGYYNYKLKIGVC 345
QVQVCR CGLLGYYN+KLK C
Sbjct: 1056 QVQVCRKCGLLGYYNHKLKASYC 1078
[7][TOP]
>UniRef100_B9F8X6 DNA-directed RNA polymerase n=1 Tax=Oryza sativa Japonica Group
RepID=B9F8X6_ORYSJ
Length = 1115
Score = 48.5 bits (114), Expect(2) = 9e-12
Identities = 20/27 (74%), Positives = 25/27 (92%)
Frame = -3
Query: 309 MKLPYACKLLIQELQSMNIVPRLKLAD 229
M++PYACKLL QELQ+MN+VPRLKL +
Sbjct: 1088 MRMPYACKLLFQELQAMNVVPRLKLTE 1114
Score = 44.7 bits (104), Expect(2) = 9e-12
Identities = 18/23 (78%), Positives = 19/23 (82%)
Frame = -1
Query: 413 QVQVCRSCGLLGYYNYKLKIGVC 345
QVQVCR CGLLGYYN+KLK C
Sbjct: 1054 QVQVCRKCGLLGYYNHKLKASYC 1076
[8][TOP]
>UniRef100_C5Z6F6 DNA-directed RNA polymerase n=1 Tax=Sorghum bicolor
RepID=C5Z6F6_SORBI
Length = 1137
Score = 47.4 bits (111), Expect(2) = 2e-11
Identities = 20/27 (74%), Positives = 24/27 (88%)
Frame = -3
Query: 309 MKLPYACKLLIQELQSMNIVPRLKLAD 229
M+LPYACKLL QEL +MN+VPRLKL +
Sbjct: 1110 MRLPYACKLLFQELHAMNVVPRLKLTE 1136
Score = 44.7 bits (104), Expect(2) = 2e-11
Identities = 18/23 (78%), Positives = 19/23 (82%)
Frame = -1
Query: 413 QVQVCRSCGLLGYYNYKLKIGVC 345
QVQVCR CGLLGYYN+KLK C
Sbjct: 1076 QVQVCRKCGLLGYYNHKLKTSYC 1098
[9][TOP]
>UniRef100_Q9FKF1 DNA-directed RNA polymerase n=1 Tax=Arabidopsis thaliana
RepID=Q9FKF1_ARATH
Length = 1194
Score = 47.0 bits (110), Expect(2) = 1e-07
Identities = 19/23 (82%), Positives = 21/23 (91%)
Frame = -1
Query: 413 QVQVCRSCGLLGYYNYKLKIGVC 345
+VQVCR+CGLLGYYNYKLK VC
Sbjct: 1110 EVQVCRACGLLGYYNYKLKKAVC 1132
Score = 32.0 bits (71), Expect(2) = 1e-07
Identities = 17/39 (43%), Positives = 27/39 (69%)
Frame = -3
Query: 309 MKLPYACKLLIQELQSMNIVPRLKLADP*DLSNELNLVI 193
MKLPYACKLL Q ++++ + +LKL+ L N+ ++I
Sbjct: 1144 MKLPYACKLLFQ-VKTIGLFFKLKLSTSSHLENDKIILI 1181
[10][TOP]
>UniRef100_C1FIF0 DNA-directed RNA polymerase n=1 Tax=Micromonas sp. RCC299
RepID=C1FIF0_9CHLO
Length = 1159
Score = 48.5 bits (114), Expect(2) = 1e-06
Identities = 22/27 (81%), Positives = 24/27 (88%)
Frame = -3
Query: 309 MKLPYACKLLIQELQSMNIVPRLKLAD 229
+KLPYACKLL QELQSMNI PRL L+D
Sbjct: 1132 LKLPYACKLLFQELQSMNICPRLTLSD 1158
Score = 27.3 bits (59), Expect(2) = 1e-06
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -1
Query: 413 QVQVCRSCGLLGYYNYKLKIGVC 345
+ QVC +CGLLGY ++ +C
Sbjct: 1098 EAQVCTNCGLLGYKHHGTGRNLC 1120
[11][TOP]
>UniRef100_A4RS40 DNA-directed RNA polymerase n=1 Tax=Ostreococcus lucimarinus CCE9901
RepID=A4RS40_OSTLU
Length = 1146
Score = 48.9 bits (115), Expect(2) = 1e-06
Identities = 22/35 (62%), Positives = 25/35 (71%)
Frame = -3
Query: 333 RMETRFPNMKLPYACKLLIQELQSMNIVPRLKLAD 229
+ E +KLPYACKLL QELQSMNI PRL L +
Sbjct: 1111 KTEAEVATLKLPYACKLLFQELQSMNIAPRLSLTE 1145
Score = 26.6 bits (57), Expect(2) = 1e-06
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = -1
Query: 413 QVQVCRSCGLLGYYNYKLKIGVC 345
+ QVC CGLLG+ ++ + C
Sbjct: 1085 EAQVCTKCGLLGFQHHITRRNAC 1107
[12][TOP]
>UniRef100_B9SHS2 DNA-directed RNA polymerase n=1 Tax=Ricinus communis
RepID=B9SHS2_RICCO
Length = 1139
Score = 55.5 bits (132), Expect = 2e-06
Identities = 34/70 (48%), Positives = 41/70 (58%)
Frame = -3
Query: 438 LMLFSDPFASSGL*IVWVVRILQL*VENWCLSITLRMETRFPNMKLPYACKLLIQELQSM 259
LM+ SDPF + ++ + S T + MKLPYACKLLIQELQSM
Sbjct: 1070 LMISSDPFEVQVCRVCGLLGYFNQKLRAGICS-TCKNGDNISTMKLPYACKLLIQELQSM 1128
Query: 258 NIVPRLKLAD 229
NIVPRLKLA+
Sbjct: 1129 NIVPRLKLAE 1138
[13][TOP]
>UniRef100_UPI000194E18E PREDICTED: hypothetical protein n=1 Tax=Taeniopygia guttata
RepID=UPI000194E18E
Length = 1280
Score = 49.7 bits (117), Expect(2) = 2e-06
Identities = 21/27 (77%), Positives = 26/27 (96%)
Frame = -3
Query: 312 NMKLPYACKLLIQELQSMNIVPRLKLA 232
++++PYACKLL QELQSMNI+PRLKLA
Sbjct: 1250 SLRIPYACKLLFQELQSMNIIPRLKLA 1276
Score = 25.0 bits (53), Expect(2) = 2e-06
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = -1
Query: 413 QVQVCRSCGLLGY 375
+V VC CGLLGY
Sbjct: 1223 EVDVCGQCGLLGY 1235
[14][TOP]
>UniRef100_UPI00004DA04E DNA-directed RNA polymerase III subunit RPC2 (EC 2.7.7.6) (RNA
polymerase III subunit C2) (DNA-directed RNA polymerase
III subunit B) (DNA-directed RNA polymerase III 127.6 kDa
polypeptide) (C128). n=1 Tax=Xenopus (Silurana)
tropicalis RepID=UPI00004DA04E
Length = 1136
Score = 49.7 bits (117), Expect(2) = 2e-06
Identities = 21/27 (77%), Positives = 26/27 (96%)
Frame = -3
Query: 312 NMKLPYACKLLIQELQSMNIVPRLKLA 232
++++PYACKLL QELQSMNI+PRLKLA
Sbjct: 1106 SLRIPYACKLLFQELQSMNIIPRLKLA 1132
Score = 25.0 bits (53), Expect(2) = 2e-06
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = -1
Query: 413 QVQVCRSCGLLGY 375
+V VC CGLLGY
Sbjct: 1079 EVDVCGKCGLLGY 1091
[15][TOP]
>UniRef100_B2GUR3 DNA-directed RNA polymerase n=1 Tax=Xenopus (Silurana) tropicalis
RepID=B2GUR3_XENTR
Length = 1134
Score = 49.7 bits (117), Expect(2) = 2e-06
Identities = 21/27 (77%), Positives = 26/27 (96%)
Frame = -3
Query: 312 NMKLPYACKLLIQELQSMNIVPRLKLA 232
++++PYACKLL QELQSMNI+PRLKLA
Sbjct: 1104 SLRIPYACKLLFQELQSMNIIPRLKLA 1130
Score = 25.0 bits (53), Expect(2) = 2e-06
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = -1
Query: 413 QVQVCRSCGLLGY 375
+V VC CGLLGY
Sbjct: 1077 EVDVCGKCGLLGY 1089
[16][TOP]
>UniRef100_UPI0000503D79 polymerase (RNA) III (DNA directed) polypeptide B n=2 Tax=Rattus
norvegicus RepID=UPI0000503D79
Length = 1133
Score = 49.7 bits (117), Expect(2) = 2e-06
Identities = 21/27 (77%), Positives = 26/27 (96%)
Frame = -3
Query: 312 NMKLPYACKLLIQELQSMNIVPRLKLA 232
++++PYACKLL QELQSMNI+PRLKLA
Sbjct: 1103 SLRIPYACKLLFQELQSMNIIPRLKLA 1129
Score = 25.0 bits (53), Expect(2) = 2e-06
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = -1
Query: 413 QVQVCRSCGLLGY 375
+V VC CGLLGY
Sbjct: 1076 EVDVCGQCGLLGY 1088
[17][TOP]
>UniRef100_P59470 DNA-directed RNA polymerase III subunit RPC2 n=1 Tax=Mus musculus
RepID=RPC2_MOUSE
Length = 1133
Score = 49.7 bits (117), Expect(2) = 2e-06
Identities = 21/27 (77%), Positives = 26/27 (96%)
Frame = -3
Query: 312 NMKLPYACKLLIQELQSMNIVPRLKLA 232
++++PYACKLL QELQSMNI+PRLKLA
Sbjct: 1103 SLRIPYACKLLFQELQSMNIIPRLKLA 1129
Score = 25.0 bits (53), Expect(2) = 2e-06
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = -1
Query: 413 QVQVCRSCGLLGY 375
+V VC CGLLGY
Sbjct: 1076 EVDVCGQCGLLGY 1088
[18][TOP]
>UniRef100_UPI0000ECD29F DNA-directed RNA polymerase III subunit RPC2 (EC 2.7.7.6) (RNA
polymerase III subunit C2) (DNA-directed RNA polymerase
III subunit B) (DNA-directed RNA polymerase III 127.6 kDa
polypeptide) (C128). n=1 Tax=Gallus gallus
RepID=UPI0000ECD29F
Length = 1132
Score = 49.7 bits (117), Expect(2) = 2e-06
Identities = 21/27 (77%), Positives = 26/27 (96%)
Frame = -3
Query: 312 NMKLPYACKLLIQELQSMNIVPRLKLA 232
++++PYACKLL QELQSMNI+PRLKLA
Sbjct: 1102 SLRIPYACKLLFQELQSMNIIPRLKLA 1128
Score = 25.0 bits (53), Expect(2) = 2e-06
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = -1
Query: 413 QVQVCRSCGLLGY 375
+V VC CGLLGY
Sbjct: 1075 EVDVCGQCGLLGY 1087
[19][TOP]
>UniRef100_A2BG99 DNA-directed RNA polymerase n=1 Tax=Danio rerio RepID=A2BG99_DANRE
Length = 1130
Score = 49.7 bits (117), Expect(2) = 2e-06
Identities = 21/27 (77%), Positives = 26/27 (96%)
Frame = -3
Query: 312 NMKLPYACKLLIQELQSMNIVPRLKLA 232
++++PYACKLL QELQSMNI+PRLKLA
Sbjct: 1100 SLRIPYACKLLFQELQSMNIIPRLKLA 1126
Score = 25.0 bits (53), Expect(2) = 2e-06
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = -1
Query: 413 QVQVCRSCGLLGY 375
+V VC CGLLGY
Sbjct: 1073 EVDVCGQCGLLGY 1085
[20][TOP]
>UniRef100_UPI0000E7F911 PREDICTED: similar to Polymerase (RNA) III (DNA directed) polypeptide
B n=1 Tax=Gallus gallus RepID=UPI0000E7F911
Length = 1126
Score = 49.7 bits (117), Expect(2) = 2e-06
Identities = 21/27 (77%), Positives = 26/27 (96%)
Frame = -3
Query: 312 NMKLPYACKLLIQELQSMNIVPRLKLA 232
++++PYACKLL QELQSMNI+PRLKLA
Sbjct: 1096 SLRIPYACKLLFQELQSMNIIPRLKLA 1122
Score = 25.0 bits (53), Expect(2) = 2e-06
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = -1
Query: 413 QVQVCRSCGLLGY 375
+V VC CGLLGY
Sbjct: 1069 EVDVCGQCGLLGY 1081
[21][TOP]
>UniRef100_UPI00006A103B DNA-directed RNA polymerase III subunit RPC2 (EC 2.7.7.6) (RNA
polymerase III subunit C2) (DNA-directed RNA polymerase
III subunit B) (DNA-directed RNA polymerase III 127.6 kDa
polypeptide) (C128). n=1 Tax=Xenopus (Silurana)
tropicalis RepID=UPI00006A103B
Length = 1122
Score = 49.7 bits (117), Expect(2) = 2e-06
Identities = 21/27 (77%), Positives = 26/27 (96%)
Frame = -3
Query: 312 NMKLPYACKLLIQELQSMNIVPRLKLA 232
++++PYACKLL QELQSMNI+PRLKLA
Sbjct: 1092 SLRIPYACKLLFQELQSMNIIPRLKLA 1118
Score = 25.0 bits (53), Expect(2) = 2e-06
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = -1
Query: 413 QVQVCRSCGLLGY 375
+V VC CGLLGY
Sbjct: 1065 EVDVCGKCGLLGY 1077
[22][TOP]
>UniRef100_C0PUS9 DNA-directed RNA polymerase (Fragment) n=1 Tax=Salmo salar
RepID=C0PUS9_SALSA
Length = 814
Score = 49.7 bits (117), Expect(2) = 2e-06
Identities = 21/27 (77%), Positives = 26/27 (96%)
Frame = -3
Query: 312 NMKLPYACKLLIQELQSMNIVPRLKLA 232
++++PYACKLL QELQSMNI+PRLKLA
Sbjct: 784 SLRIPYACKLLFQELQSMNIIPRLKLA 810
Score = 25.0 bits (53), Expect(2) = 2e-06
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = -1
Query: 413 QVQVCRSCGLLGY 375
+V VC CGLLGY
Sbjct: 757 EVDVCGQCGLLGY 769
[23][TOP]
>UniRef100_Q9CSL3 Putative uncharacterized protein (Fragment) n=1 Tax=Mus musculus
RepID=Q9CSL3_MOUSE
Length = 112
Score = 49.7 bits (117), Expect(2) = 3e-06
Identities = 21/27 (77%), Positives = 26/27 (96%)
Frame = -3
Query: 312 NMKLPYACKLLIQELQSMNIVPRLKLA 232
++++PYACKLL QELQSMNI+PRLKLA
Sbjct: 82 SLRIPYACKLLFQELQSMNIIPRLKLA 108
Score = 25.0 bits (53), Expect(2) = 3e-06
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = -1
Query: 413 QVQVCRSCGLLGY 375
+V VC CGLLGY
Sbjct: 55 EVDVCGQCGLLGY 67
[24][TOP]
>UniRef100_B9WLY1 DNA-directed RNA polymerase n=1 Tax=Candida dubliniensis CD36
RepID=B9WLY1_CANDC
Length = 1157
Score = 46.2 bits (108), Expect(2) = 5e-06
Identities = 23/43 (53%), Positives = 26/43 (60%)
Frame = -3
Query: 357 NWCLSITLRMETRFPNMKLPYACKLLIQELQSMNIVPRLKLAD 229
NWC T + M +PYA KLL QEL SMNI PRL+L D
Sbjct: 1115 NWCT--TCKSSENVIKMTIPYAAKLLFQELLSMNIAPRLRLGD 1155
Score = 27.3 bits (59), Expect(2) = 5e-06
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = -1
Query: 413 QVQVCRSCGLLGYYNY 366
+V VC CGL+GY N+
Sbjct: 1101 EVDVCNKCGLMGYNNW 1116
[25][TOP]
>UniRef100_UPI00017B31AA UPI00017B31AA related cluster n=1 Tax=Tetraodon nigroviridis
RepID=UPI00017B31AA
Length = 1153
Score = 48.5 bits (114), Expect(2) = 5e-06
Identities = 20/27 (74%), Positives = 26/27 (96%)
Frame = -3
Query: 312 NMKLPYACKLLIQELQSMNIVPRLKLA 232
++++PYACKLL QELQSMNI+PRLKL+
Sbjct: 1127 SLRIPYACKLLFQELQSMNIIPRLKLS 1153
Score = 25.0 bits (53), Expect(2) = 5e-06
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = -1
Query: 413 QVQVCRSCGLLGY 375
+V VC CGLLGY
Sbjct: 1100 EVDVCGQCGLLGY 1112
[26][TOP]
>UniRef100_UPI0001560749 PREDICTED: similar to DNA-directed RNA polymerase III subunit RPC2
(RNA polymerase III subunit C2) (DNA-directed RNA
polymerase III subunit B) (DNA-directed RNA polymerase
III 127.6 kDa polypeptide) (C128) n=1 Tax=Equus caballus
RepID=UPI0001560749
Length = 1133
Score = 48.5 bits (114), Expect(2) = 5e-06
Identities = 20/27 (74%), Positives = 26/27 (96%)
Frame = -3
Query: 312 NMKLPYACKLLIQELQSMNIVPRLKLA 232
++++PYACKLL QELQSMNI+PRLKL+
Sbjct: 1103 SLRIPYACKLLFQELQSMNIIPRLKLS 1129
Score = 25.0 bits (53), Expect(2) = 5e-06
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = -1
Query: 413 QVQVCRSCGLLGY 375
+V VC CGLLGY
Sbjct: 1076 EVDVCGQCGLLGY 1088
[27][TOP]
>UniRef100_UPI0000E23379 PREDICTED: polymerase (RNA) III (DNA directed) polypeptide B isoform
2 n=1 Tax=Pan troglodytes RepID=UPI0000E23379
Length = 1133
Score = 48.5 bits (114), Expect(2) = 5e-06
Identities = 20/27 (74%), Positives = 26/27 (96%)
Frame = -3
Query: 312 NMKLPYACKLLIQELQSMNIVPRLKLA 232
++++PYACKLL QELQSMNI+PRLKL+
Sbjct: 1103 SLRIPYACKLLFQELQSMNIIPRLKLS 1129
Score = 25.0 bits (53), Expect(2) = 5e-06
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = -1
Query: 413 QVQVCRSCGLLGY 375
+V VC CGLLGY
Sbjct: 1076 EVDVCGQCGLLGY 1088
[28][TOP]
>UniRef100_UPI00005EAC23 PREDICTED: similar to Polymerase (RNA) III (DNA directed) polypeptide
B n=1 Tax=Monodelphis domestica RepID=UPI00005EAC23
Length = 1133
Score = 48.5 bits (114), Expect(2) = 5e-06
Identities = 20/27 (74%), Positives = 26/27 (96%)
Frame = -3
Query: 312 NMKLPYACKLLIQELQSMNIVPRLKLA 232
++++PYACKLL QELQSMNI+PRLKL+
Sbjct: 1103 SLRIPYACKLLFQELQSMNIIPRLKLS 1129
Score = 25.0 bits (53), Expect(2) = 5e-06
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = -1
Query: 413 QVQVCRSCGLLGY 375
+V VC CGLLGY
Sbjct: 1076 EVDVCGQCGLLGY 1088
[29][TOP]
>UniRef100_UPI00005A223E PREDICTED: similar to DNA-directed RNA polymerase III subunit 127.6
kDa polypeptide (RNA polymerase III subunit 2) (RPC2) n=1
Tax=Canis lupus familiaris RepID=UPI00005A223E
Length = 1133
Score = 48.5 bits (114), Expect(2) = 5e-06
Identities = 20/27 (74%), Positives = 26/27 (96%)
Frame = -3
Query: 312 NMKLPYACKLLIQELQSMNIVPRLKLA 232
++++PYACKLL QELQSMNI+PRLKL+
Sbjct: 1103 SLRIPYACKLLFQELQSMNIIPRLKLS 1129
Score = 25.0 bits (53), Expect(2) = 5e-06
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = -1
Query: 413 QVQVCRSCGLLGY 375
+V VC CGLLGY
Sbjct: 1076 EVDVCGQCGLLGY 1088
[30][TOP]
>UniRef100_UPI0000F339C2 PREDICTED: similar to DNA-directed RNA polymerase III subunit RPC2
(RNA polymerase III subunit C2) (DNA-directed RNA
polymerase III subunit B) (DNA-directed RNA polymerase
III 127.6 kDa polypeptide) (C128) n=1 Tax=Bos taurus
RepID=UPI0000F339C2
Length = 1133
Score = 48.5 bits (114), Expect(2) = 5e-06
Identities = 20/27 (74%), Positives = 26/27 (96%)
Frame = -3
Query: 312 NMKLPYACKLLIQELQSMNIVPRLKLA 232
++++PYACKLL QELQSMNI+PRLKL+
Sbjct: 1103 SLRIPYACKLLFQELQSMNIIPRLKLS 1129
Score = 25.0 bits (53), Expect(2) = 5e-06
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = -1
Query: 413 QVQVCRSCGLLGY 375
+V VC CGLLGY
Sbjct: 1076 EVDVCGQCGLLGY 1088
[31][TOP]
>UniRef100_Q7Z3R8 DNA-directed RNA polymerase n=2 Tax=Homininae RepID=Q7Z3R8_HUMAN
Length = 1133
Score = 48.5 bits (114), Expect(2) = 5e-06
Identities = 20/27 (74%), Positives = 26/27 (96%)
Frame = -3
Query: 312 NMKLPYACKLLIQELQSMNIVPRLKLA 232
++++PYACKLL QELQSMNI+PRLKL+
Sbjct: 1103 SLRIPYACKLLFQELQSMNIIPRLKLS 1129
Score = 25.0 bits (53), Expect(2) = 5e-06
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = -1
Query: 413 QVQVCRSCGLLGY 375
+V VC CGLLGY
Sbjct: 1076 EVDVCGQCGLLGY 1088
[32][TOP]
>UniRef100_Q9NW08 DNA-directed RNA polymerase III subunit RPC2 n=2 Tax=Homo sapiens
RepID=RPC2_HUMAN
Length = 1133
Score = 48.5 bits (114), Expect(2) = 5e-06
Identities = 20/27 (74%), Positives = 26/27 (96%)
Frame = -3
Query: 312 NMKLPYACKLLIQELQSMNIVPRLKLA 232
++++PYACKLL QELQSMNI+PRLKL+
Sbjct: 1103 SLRIPYACKLLFQELQSMNIIPRLKLS 1129
Score = 25.0 bits (53), Expect(2) = 5e-06
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = -1
Query: 413 QVQVCRSCGLLGY 375
+V VC CGLLGY
Sbjct: 1076 EVDVCGQCGLLGY 1088
[33][TOP]
>UniRef100_UPI00017B31A9 UPI00017B31A9 related cluster n=1 Tax=Tetraodon nigroviridis
RepID=UPI00017B31A9
Length = 1132
Score = 48.5 bits (114), Expect(2) = 5e-06
Identities = 20/27 (74%), Positives = 26/27 (96%)
Frame = -3
Query: 312 NMKLPYACKLLIQELQSMNIVPRLKLA 232
++++PYACKLL QELQSMNI+PRLKL+
Sbjct: 1102 SLRIPYACKLLFQELQSMNIIPRLKLS 1128
Score = 25.0 bits (53), Expect(2) = 5e-06
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = -1
Query: 413 QVQVCRSCGLLGY 375
+V VC CGLLGY
Sbjct: 1075 EVDVCGQCGLLGY 1087
[34][TOP]
>UniRef100_UPI00016E4F57 UPI00016E4F57 related cluster n=1 Tax=Takifugu rubripes
RepID=UPI00016E4F57
Length = 1132
Score = 48.5 bits (114), Expect(2) = 5e-06
Identities = 20/27 (74%), Positives = 26/27 (96%)
Frame = -3
Query: 312 NMKLPYACKLLIQELQSMNIVPRLKLA 232
++++PYACKLL QELQSMNI+PRLKL+
Sbjct: 1102 SLRIPYACKLLFQELQSMNIIPRLKLS 1128
Score = 25.0 bits (53), Expect(2) = 5e-06
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = -1
Query: 413 QVQVCRSCGLLGY 375
+V VC CGLLGY
Sbjct: 1075 EVDVCGQCGLLGY 1087
[35][TOP]
>UniRef100_UPI00016E4F58 UPI00016E4F58 related cluster n=1 Tax=Takifugu rubripes
RepID=UPI00016E4F58
Length = 1118
Score = 48.5 bits (114), Expect(2) = 5e-06
Identities = 20/27 (74%), Positives = 26/27 (96%)
Frame = -3
Query: 312 NMKLPYACKLLIQELQSMNIVPRLKLA 232
++++PYACKLL QELQSMNI+PRLKL+
Sbjct: 1088 SLRIPYACKLLFQELQSMNIIPRLKLS 1114
Score = 25.0 bits (53), Expect(2) = 5e-06
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = -1
Query: 413 QVQVCRSCGLLGY 375
+V VC CGLLGY
Sbjct: 1061 EVDVCGQCGLLGY 1073
[36][TOP]
>UniRef100_Q5NVB0 Putative uncharacterized protein DKFZp469K1717 n=1 Tax=Pongo abelii
RepID=Q5NVB0_PONAB
Length = 1116
Score = 48.5 bits (114), Expect(2) = 5e-06
Identities = 20/27 (74%), Positives = 26/27 (96%)
Frame = -3
Query: 312 NMKLPYACKLLIQELQSMNIVPRLKLA 232
++++PYACKLL QELQSMNI+PRLKL+
Sbjct: 1086 SLRIPYACKLLFQELQSMNIIPRLKLS 1112
Score = 25.0 bits (53), Expect(2) = 5e-06
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = -1
Query: 413 QVQVCRSCGLLGY 375
+V VC CGLLGY
Sbjct: 1059 EVDVCGQCGLLGY 1071
[37][TOP]
>UniRef100_UPI000155CB1A PREDICTED: similar to Polymerase (RNA) III (DNA directed) polypeptide
B n=1 Tax=Ornithorhynchus anatinus RepID=UPI000155CB1A
Length = 1113
Score = 48.5 bits (114), Expect(2) = 5e-06
Identities = 20/27 (74%), Positives = 26/27 (96%)
Frame = -3
Query: 312 NMKLPYACKLLIQELQSMNIVPRLKLA 232
++++PYACKLL QELQSMNI+PRLKL+
Sbjct: 1083 SLRIPYACKLLFQELQSMNIIPRLKLS 1109
Score = 25.0 bits (53), Expect(2) = 5e-06
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = -1
Query: 413 QVQVCRSCGLLGY 375
+V VC CGLLGY
Sbjct: 1056 EVDVCGQCGLLGY 1068
[38][TOP]
>UniRef100_B3KV73 DNA-directed RNA polymerase n=1 Tax=Homo sapiens RepID=B3KV73_HUMAN
Length = 1075
Score = 48.5 bits (114), Expect(2) = 5e-06
Identities = 20/27 (74%), Positives = 26/27 (96%)
Frame = -3
Query: 312 NMKLPYACKLLIQELQSMNIVPRLKLA 232
++++PYACKLL QELQSMNI+PRLKL+
Sbjct: 1045 SLRIPYACKLLFQELQSMNIIPRLKLS 1071
Score = 25.0 bits (53), Expect(2) = 5e-06
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = -1
Query: 413 QVQVCRSCGLLGY 375
+V VC CGLLGY
Sbjct: 1018 EVDVCGQCGLLGY 1030
[39][TOP]
>UniRef100_B3KRQ8 DNA-directed RNA polymerase n=1 Tax=Homo sapiens RepID=B3KRQ8_HUMAN
Length = 838
Score = 48.5 bits (114), Expect(2) = 5e-06
Identities = 20/27 (74%), Positives = 26/27 (96%)
Frame = -3
Query: 312 NMKLPYACKLLIQELQSMNIVPRLKLA 232
++++PYACKLL QELQSMNI+PRLKL+
Sbjct: 808 SLRIPYACKLLFQELQSMNIIPRLKLS 834
Score = 25.0 bits (53), Expect(2) = 5e-06
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = -1
Query: 413 QVQVCRSCGLLGY 375
+V VC CGLLGY
Sbjct: 781 EVDVCGQCGLLGY 793
[40][TOP]
>UniRef100_UPI000179EFE0 UPI000179EFE0 related cluster n=1 Tax=Bos taurus
RepID=UPI000179EFE0
Length = 796
Score = 48.5 bits (114), Expect(2) = 5e-06
Identities = 20/27 (74%), Positives = 26/27 (96%)
Frame = -3
Query: 312 NMKLPYACKLLIQELQSMNIVPRLKLA 232
++++PYACKLL QELQSMNI+PRLKL+
Sbjct: 766 SLRIPYACKLLFQELQSMNIIPRLKLS 792
Score = 25.0 bits (53), Expect(2) = 5e-06
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = -1
Query: 413 QVQVCRSCGLLGY 375
+V VC CGLLGY
Sbjct: 739 EVDVCGQCGLLGY 751
[41][TOP]
>UniRef100_B3KQY9 DNA-directed RNA polymerase n=1 Tax=Homo sapiens RepID=B3KQY9_HUMAN
Length = 523
Score = 48.5 bits (114), Expect(2) = 5e-06
Identities = 20/27 (74%), Positives = 26/27 (96%)
Frame = -3
Query: 312 NMKLPYACKLLIQELQSMNIVPRLKLA 232
++++PYACKLL QELQSMNI+PRLKL+
Sbjct: 493 SLRIPYACKLLFQELQSMNIIPRLKLS 519
Score = 25.0 bits (53), Expect(2) = 5e-06
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = -1
Query: 413 QVQVCRSCGLLGY 375
+V VC CGLLGY
Sbjct: 466 EVDVCGQCGLLGY 478
[42][TOP]
>UniRef100_Q54IZ9 Ddi rpc2 intein n=1 Tax=Dictyostelium discoideum RepID=RPC2_DICDI
Length = 1608
Score = 48.5 bits (114), Expect(2) = 7e-06
Identities = 21/27 (77%), Positives = 25/27 (92%)
Frame = -3
Query: 309 MKLPYACKLLIQELQSMNIVPRLKLAD 229
+++PYACKLL QELQ+MNIVPRLKL D
Sbjct: 1581 IQIPYACKLLFQELQAMNIVPRLKLVD 1607
Score = 24.6 bits (52), Expect(2) = 7e-06
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = -1
Query: 410 VQVCRSCGLLGYYNY 366
V C++CG LGY Y
Sbjct: 1554 VYACKNCGFLGYEGY 1568
[43][TOP]
>UniRef100_C5M3E6 DNA-directed RNA polymerase n=1 Tax=Candida tropicalis MYA-3404
RepID=C5M3E6_CANTT
Length = 1159
Score = 45.8 bits (107), Expect(2) = 7e-06
Identities = 23/43 (53%), Positives = 26/43 (60%)
Frame = -3
Query: 357 NWCLSITLRMETRFPNMKLPYACKLLIQELQSMNIVPRLKLAD 229
NWC T + M +PYA KLL QEL SMNI PRL+L D
Sbjct: 1117 NWCT--TCQSSENVIKMTIPYAAKLLFQELLSMNIAPRLRLGD 1157
Score = 27.3 bits (59), Expect(2) = 7e-06
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = -1
Query: 413 QVQVCRSCGLLGYYNY 366
+V VC CGL+GY N+
Sbjct: 1103 EVDVCNKCGLMGYNNW 1118
[44][TOP]
>UniRef100_Q27492 DNA-directed RNA polymerase n=1 Tax=Caenorhabditis elegans
RepID=Q27492_CAEEL
Length = 1154
Score = 52.8 bits (125), Expect(2) = 7e-06
Identities = 26/43 (60%), Positives = 29/43 (67%)
Frame = -3
Query: 360 ENWCLSITLRMETRFPNMKLPYACKLLIQELQSMNIVPRLKLA 232
+ WC R N+K+PYACKLL QELQSMNIVPRL LA
Sbjct: 1110 KGWCQKC--RSSKSMANIKIPYACKLLFQELQSMNIVPRLDLA 1150
Score = 20.4 bits (41), Expect(2) = 7e-06
Identities = 6/12 (50%), Positives = 9/12 (75%)
Frame = -1
Query: 413 QVQVCRSCGLLG 378
+V VC CG++G
Sbjct: 1097 KVDVCTGCGVIG 1108
[45][TOP]
>UniRef100_B6VBN7 DNA-directed RNA polymerase n=1 Tax=Caenorhabditis brenneri
RepID=B6VBN7_CAEBE
Length = 1152
Score = 52.8 bits (125), Expect(2) = 7e-06
Identities = 26/43 (60%), Positives = 29/43 (67%)
Frame = -3
Query: 360 ENWCLSITLRMETRFPNMKLPYACKLLIQELQSMNIVPRLKLA 232
+ WC R N+K+PYACKLL QELQSMNIVPRL LA
Sbjct: 1108 KGWCQKC--RSSKSMANIKIPYACKLLFQELQSMNIVPRLDLA 1148
Score = 20.4 bits (41), Expect(2) = 7e-06
Identities = 6/12 (50%), Positives = 9/12 (75%)
Frame = -1
Query: 413 QVQVCRSCGLLG 378
+V VC CG++G
Sbjct: 1095 KVDVCTGCGVIG 1106
[46][TOP]
>UniRef100_C3YYC3 DNA-directed RNA polymerase n=1 Tax=Branchiostoma floridae
RepID=C3YYC3_BRAFL
Length = 1137
Score = 48.1 bits (113), Expect(2) = 7e-06
Identities = 21/26 (80%), Positives = 24/26 (92%)
Frame = -3
Query: 312 NMKLPYACKLLIQELQSMNIVPRLKL 235
++K+PYACKLL QELQSMNI PRLKL
Sbjct: 1107 SLKMPYACKLLFQELQSMNIAPRLKL 1132
Score = 25.0 bits (53), Expect(2) = 7e-06
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = -1
Query: 413 QVQVCRSCGLLGY 375
+V VC CGLLGY
Sbjct: 1080 EVDVCGECGLLGY 1092
[47][TOP]
>UniRef100_B8BQM2 DNA-directed RNA polymerase n=1 Tax=Thalassiosira pseudonana CCMP1335
RepID=B8BQM2_THAPS
Length = 1108
Score = 53.5 bits (127), Expect = 7e-06
Identities = 31/70 (44%), Positives = 44/70 (62%)
Frame = -3
Query: 438 LMLFSDPFASSGL*IVWVVRILQL*VENWCLSITLRMETRFPNMKLPYACKLLIQELQSM 259
LM SD F++S + +LQ +NWC R + +++LPYACKLL QELQ+M
Sbjct: 1045 LMHSSDAFSAS---VCMTCGLLQY--QNWCQYC--RSGEKVSDIRLPYACKLLFQELQAM 1097
Query: 258 NIVPRLKLAD 229
N++PRL+L D
Sbjct: 1098 NVLPRLRLKD 1107
[48][TOP]
>UniRef100_C1N4K3 DNA-directed RNA polymerase n=1 Tax=Micromonas pusilla CCMP1545
RepID=C1N4K3_9CHLO
Length = 1197
Score = 48.5 bits (114), Expect(2) = 9e-06
Identities = 22/27 (81%), Positives = 24/27 (88%)
Frame = -3
Query: 309 MKLPYACKLLIQELQSMNIVPRLKLAD 229
+KLPYACKLL QELQSMNI PRL L+D
Sbjct: 1170 LKLPYACKLLFQELQSMNICPRLTLSD 1196
Score = 24.3 bits (51), Expect(2) = 9e-06
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = -1
Query: 413 QVQVCRSCGLLGYYNY 366
+ QVC CGLL Y ++
Sbjct: 1137 EAQVCNKCGLLAYRHH 1152