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[1][TOP]
>UniRef100_A2Q624 Ribonuclease H n=1 Tax=Medicago truncatula RepID=A2Q624_MEDTR
Length = 235
Score = 72.4 bits (176), Expect = 1e-11
Identities = 40/127 (31%), Positives = 63/127 (49%)
Frame = -2
Query: 411 ISGFYAGSLGGDALRAEIAALKHGLTLLWNANVRRATCEVDCLDIVEALENDRYQFHALA 232
+ GF+ + L EI+ L HGL L W+ ++ C D +V+ ++ D H
Sbjct: 107 LHGFFGKNSRPCILHVEISGLYHGLKLCWDIGIKHVVCHSDSTTVVDLVQKDLNVHHKYG 166
Query: 231 SELLDIRLLLDRDWTVTLAYVPREANAAADCLAGLGASLLCPLTCLESPPQELQPILARD 52
+ ++ I+ LL RDW V+L + E NAAAD LA GA L L P ++ +L D
Sbjct: 167 NLIMAIKKLLRRDWVVSLRHTLCEGNAAADFLAKKGALSDTSLVILNEAPPDIAFVLLAD 226
Query: 51 LLAL*FL 31
+ + F+
Sbjct: 227 AVGVKFV 233
[2][TOP]
>UniRef100_Q2HTL5 Ribonuclease H (Fragment) n=1 Tax=Medicago truncatula
RepID=Q2HTL5_MEDTR
Length = 233
Score = 67.4 bits (163), Expect = 5e-10
Identities = 46/129 (35%), Positives = 69/129 (53%), Gaps = 2/129 (1%)
Frame = -2
Query: 411 ISGFYAGSL--GGDALRAEIAALKHGLTLLWNANVRRATCEVDCLDIVEALENDRYQFHA 238
ISGF +G + D L AE+ A+ GL L+ + NV C D L V + ND ++H
Sbjct: 105 ISGF-SGLIPNSADILLAELTAIHQGLKLVTDLNVNEIMCYSDSLLAVNLIANDTPRYHI 163
Query: 237 LASELLDIRLLLDRDWTVTLAYVPREANAAADCLAGLGASLLCPLTCLESPPQELQPILA 58
A+ + +I+ LL+ D ++L + RE N AD A GA+ L +SPP +L P+L
Sbjct: 164 YAALIQNIKDLLN-DRNISLHHTLREGNQCADFFAKFGANSDAALVVHQSPPADLLPLLR 222
Query: 57 RDLLAL*FL 31
D L + F+
Sbjct: 223 ADALGIYFV 231
[3][TOP]
>UniRef100_Q2HRG4 Ribonuclease H n=1 Tax=Medicago truncatula RepID=Q2HRG4_MEDTR
Length = 1378
Score = 67.4 bits (163), Expect = 5e-10
Identities = 43/123 (34%), Positives = 64/123 (52%), Gaps = 1/123 (0%)
Frame = -2
Query: 411 ISGFYAGSLGGDA-LRAEIAALKHGLTLLWNANVRRATCEVDCLDIVEALENDRYQFHAL 235
+ GFY GSLG ++AE+ A+ GL W+ R E D L+ ++ +E + A
Sbjct: 1212 LGGFY-GSLGFTTKMKAELYAICQGLITAWDFGYRNILVETDYLEAIKHIEEANIEHDAY 1270
Query: 234 ASELLDIRLLLDRDWTVTLAYVPREANAAADCLAGLGASLLCPLTCLESPPQELQPILAR 55
S + DIR L+ R+W++ L + +E NA AD L+ +GA PPQ+LQ L
Sbjct: 1271 GSLVADIRSLMQRNWSLNLDHSLKEDNACADILSRIGAEQHEVYCFHAYPPQQLQLALMA 1330
Query: 54 DLL 46
D L
Sbjct: 1331 DAL 1333
[4][TOP]
>UniRef100_B9HMY3 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9HMY3_POPTR
Length = 227
Score = 64.3 bits (155), Expect = 4e-09
Identities = 34/98 (34%), Positives = 53/98 (54%), Gaps = 2/98 (2%)
Frame = -2
Query: 390 SLGG--DALRAEIAALKHGLTLLWNANVRRATCEVDCLDIVEALENDRYQFHALASELLD 217
S+GG L E+ +KHGL L WN R+ C +D ++ + + + F L ++D
Sbjct: 120 SIGGFDTNLLPELLDIKHGLVLAWNQGYRKIICNLDSINASRRIHDGNFIFQKLGVVIVD 179
Query: 216 IRLLLDRDWTVTLAYVPREANAAADCLAGLGASLLCPL 103
+ LL R+W V L ++ REAN+ AD +A GA L +
Sbjct: 180 TKKLLSREWEVHLLHLLREANSCADFMAKHGARNLAEI 217
[5][TOP]
>UniRef100_B9HFN7 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9HFN7_POPTR
Length = 245
Score = 61.2 bits (147), Expect = 3e-08
Identities = 42/124 (33%), Positives = 63/124 (50%), Gaps = 4/124 (3%)
Frame = -2
Query: 405 GFYAGSLG-GDALRAEIAALKHGLTLLWNANVRRATCEVDCLDIVEALENDRYQFHALAS 229
G +A ++G ++ AE+ A+ GL L W+ R+ E D +V + D + +
Sbjct: 114 GGFARNIGICSSVNAELWAVYVGLQLAWDRGFRKVDLESDSKVVVGLINGDSVRVDRNYN 173
Query: 228 ELLDIRLLLDRDWTVTLAYVPREANAAADCLAGLGAS---LLCPLTCLESPPQELQPILA 58
++ I+ +L RDW VT +V REAN AD LA G + L LE PP L P+L
Sbjct: 174 IIMQIKGMLGRDWEVTTYHVYREANCVADWLANYGLTRDLLDRGSDVLEEPPSGLYPLLY 233
Query: 57 RDLL 46
DL+
Sbjct: 234 YDLI 237
[6][TOP]
>UniRef100_Q1SMZ7 Ribonuclease H n=1 Tax=Medicago truncatula RepID=Q1SMZ7_MEDTR
Length = 438
Score = 60.8 bits (146), Expect = 4e-08
Identities = 42/126 (33%), Positives = 64/126 (50%)
Frame = -2
Query: 408 SGFYAGSLGGDALRAEIAALKHGLTLLWNANVRRATCEVDCLDIVEALENDRYQFHALAS 229
SGF S D L+AE+ A+ L ++ ++N+ C D L V + ND ++H A
Sbjct: 314 SGFIPNST--DILQAELTAIHQSLHMVIDSNMNDVMCYSDSLLAVNLIMNDTPRYHTYAV 371
Query: 228 ELLDIRLLLDRDWTVTLAYVPREANAAADCLAGLGASLLCPLTCLESPPQELQPILARDL 49
+ +I+ LL +TL + RE N AD A LGA+ L +SPP +L P+L D
Sbjct: 372 LIQNIKDLLSVR-NITLHHTLREGNQCADFFAKLGANSDVHLVVHQSPPADLLPLLRADA 430
Query: 48 LAL*FL 31
+ F+
Sbjct: 431 IGTVFI 436
[7][TOP]
>UniRef100_B9IKN0 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9IKN0_POPTR
Length = 245
Score = 60.1 bits (144), Expect = 8e-08
Identities = 39/113 (34%), Positives = 56/113 (49%), Gaps = 3/113 (2%)
Frame = -2
Query: 375 ALRAEIAALKHGLTLLWNANVRRATCEVDCLDIVEALENDRYQFHALASELLDIRLLLDR 196
++ AE+ A+ GL L W+ R+ E D +V + D + + ++ I+ +L R
Sbjct: 125 SVNAELWAVYVGLQLAWDRGFRKVDLESDSKVVVGLINGDSVRVDRNYNIIMQIKDMLGR 184
Query: 195 DWTVTLAYVPREANAAADCLAGLGAS---LLCPLTCLESPPQELQPILARDLL 46
DW VT +V REAN AD LA G S L LE PP L P+ DL+
Sbjct: 185 DWEVTTYHVYREANCVADWLANYGLSRDLLDRGSDVLEEPPSGLYPLFYYDLI 237
[8][TOP]
>UniRef100_B9N0S8 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9N0S8_POPTR
Length = 244
Score = 58.2 bits (139), Expect = 3e-07
Identities = 36/127 (28%), Positives = 61/127 (48%), Gaps = 5/127 (3%)
Frame = -2
Query: 405 GFYAGSLGGDALRAEIAALKHGLTLLWNANVRRATCEVDCLDIVEALEND-----RYQFH 241
GF A AE+ A++ L L W+ +++ E D ++V+ + N + QF
Sbjct: 90 GFSCRVKSESAFEAELLAVREALKLAWDKGLKKVILESDSENVVKRIRNQVTRQPKNQFE 149
Query: 240 ALASELLDIRLLLDRDWTVTLAYVPREANAAADCLAGLGASLLCPLTCLESPPQELQPIL 61
A+ +L+ + ++RDW + + RE N AAD L +G S L + PP+ L IL
Sbjct: 150 AV---ILECQAYVNRDWDCFIQHTLREGNFAADALTKIGISESFELHVWKHPPESLSLIL 206
Query: 60 ARDLLAL 40
D + +
Sbjct: 207 LADKIGM 213
[9][TOP]
>UniRef100_B9MXX8 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9MXX8_POPTR
Length = 248
Score = 57.8 bits (138), Expect = 4e-07
Identities = 35/124 (28%), Positives = 57/124 (45%), Gaps = 2/124 (1%)
Frame = -2
Query: 405 GFYAGSLGGDALRAEIAALKHGLTLLWNANVRRATCEVDCLDIVEALEND--RYQFHALA 232
GF + G A AE+ A++ L L W+ ++R E D +V + N R + +
Sbjct: 94 GFSSRVKSGSAFEAELLAVREALKLAWDKGLKRVIVESDSESVVNRIRNQLTRQPKNQIE 153
Query: 231 SELLDIRLLLDRDWTVTLAYVPREANAAADCLAGLGASLLCPLTCLESPPQELQPILARD 52
+ +L+ + + R+W L + RE N AAD L + S L PP+ L IL D
Sbjct: 154 AVILECQSYVSREWNCFLQHTHREGNFAADALTKIIISESFELHVFNHPPKSLSLILLAD 213
Query: 51 LLAL 40
+ +
Sbjct: 214 KIGM 217
[10][TOP]
>UniRef100_A2Q4M4 Ribonuclease H n=1 Tax=Medicago truncatula RepID=A2Q4M4_MEDTR
Length = 147
Score = 56.2 bits (134), Expect = 1e-06
Identities = 38/119 (31%), Positives = 60/119 (50%)
Frame = -2
Query: 366 AEIAALKHGLTLLWNANVRRATCEVDCLDIVEALENDRYQFHALASELLDIRLLLDRDWT 187
AEI A+ GL L N C D ++ L ++H AS + +I L++ +W
Sbjct: 22 AEIIAIYQGLHLARNFGCTYIICYSDSKGGIDILAKPVKKYHCYASAIANIIDLMNLEWE 81
Query: 186 VTLAYVPREANAAADCLAGLGASLLCPLTCLESPPQELQPILARDLLAL*FLFLACLIF 10
V L + RE NA+AD LA G+S +PP++L+ IL D + F+F + ++F
Sbjct: 82 VKLCHSLREGNASADFLAKWGSSNDIKWKLRNTPPEDLKAILLNDSMRT-FVFNSFVVF 139
[11][TOP]
>UniRef100_B9HV70 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9HV70_POPTR
Length = 245
Score = 55.5 bits (132), Expect = 2e-06
Identities = 40/124 (32%), Positives = 62/124 (50%), Gaps = 4/124 (3%)
Frame = -2
Query: 405 GFYAGSLG-GDALRAEIAALKHGLTLLWNANVRRATCEVDCLDIVEALENDRYQFHALAS 229
G +A ++G ++ AE+ A+ GL L W+ R+ E D +V + D + +
Sbjct: 114 GGFARNIGICSSVNAELWAVYVGLQLAWDRGFRKVDLESDSKVVVGLINGDSVRVDRNYN 173
Query: 228 ELLDIRLLLDRDWTVTLAYVPREANAAADCLAGLGAS---LLCPLTCLESPPQELQPILA 58
++ I+ +L R+W VT +V REAN AD LA G + L LE P L P+L
Sbjct: 174 IIMQIKGMLGRNWEVTTYHVYREANCVADWLANYGLTRDLLDRGSDVLEELPSGLYPLLY 233
Query: 57 RDLL 46
DL+
Sbjct: 234 YDLI 237
[12][TOP]
>UniRef100_Q9FG26 Non-LTR retroelement reverse transcriptase-like n=1 Tax=Arabidopsis
thaliana RepID=Q9FG26_ARATH
Length = 676
Score = 55.1 bits (131), Expect = 2e-06
Identities = 35/111 (31%), Positives = 53/111 (47%)
Frame = -2
Query: 366 AEIAALKHGLTLLWNANVRRATCEVDCLDIVEALENDRYQFHALASELLDIRLLLDRDWT 187
AE+ + +GL + W RR EVD +V L++ H LA + + +DW
Sbjct: 560 AELWGVYYGLVVAWERGWRRVRLEVDSALVVGFLQSGIGDSHPLAFLVRLCHGFISKDWI 619
Query: 186 VTLAYVPREANAAADCLAGLGASLLCPLTCLESPPQELQPILARDLLAL*F 34
V + +V REAN AD LA +L L+S P+ + IL D++ F
Sbjct: 620 VRITHVYREANRLADGLANYAFTLPFGFLLLDSCPEHVSSILLEDVMGTSF 670
[13][TOP]
>UniRef100_O82276 Putative non-LTR retroelement reverse transcriptase n=1
Tax=Arabidopsis thaliana RepID=O82276_ARATH
Length = 1231
Score = 55.1 bits (131), Expect = 2e-06
Identities = 37/121 (30%), Positives = 58/121 (47%), Gaps = 8/121 (6%)
Frame = -2
Query: 387 LGGDALR--------AEIAALKHGLTLLWNANVRRATCEVDCLDIVEALENDRYQFHALA 232
LGG AL AE+ +GL + W+ RR ++DC +V L H L+
Sbjct: 1100 LGGFALNIGSCAAPLAELWGAYYGLLIAWDKGFRRVELDLDCKLVVGFLSTGVSNAHPLS 1159
Query: 231 SELLDIRLLLDRDWTVTLAYVPREANAAADCLAGLGASLLCPLTCLESPPQELQPILARD 52
+ + RDW V +++V REAN AD LA +L L C ++ P+ ++ +L D
Sbjct: 1160 FLVRLCQGFFTRDWLVRVSHVYREANRLADGLANYAFTLPLGLHCFDACPEGVRLLLLAD 1219
Query: 51 L 49
+
Sbjct: 1220 V 1220
[14][TOP]
>UniRef100_B9RR14 Putative uncharacterized protein n=1 Tax=Ricinus communis
RepID=B9RR14_RICCO
Length = 283
Score = 55.1 bits (131), Expect = 2e-06
Identities = 35/122 (28%), Positives = 59/122 (48%)
Frame = -2
Query: 405 GFYAGSLGGDALRAEIAALKHGLTLLWNANVRRATCEVDCLDIVEALENDRYQFHALASE 226
G S+G + AE+ A+ GL L WN + EVD + + L + ++
Sbjct: 151 GIIRDSIG---MGAELWAVLQGLILAWNNGFHKLLVEVDSAIVADWLSSKNKCNGIHSNM 207
Query: 225 LLDIRLLLDRDWTVTLAYVPREANAAADCLAGLGASLLCPLTCLESPPQELQPILARDLL 46
+L +L RDW+ ++ ++ REAN ADCLA L S + L P E++ ++ D +
Sbjct: 208 VLACLDILKRDWSASIGHIYREANQVADCLANLALSYPVGIHELPMVPYEVKTLVNEDCI 267
Query: 45 AL 40
+
Sbjct: 268 GV 269
[15][TOP]
>UniRef100_B9RHM1 Nucleic acid binding protein, putative n=1 Tax=Ricinus communis
RepID=B9RHM1_RICCO
Length = 119
Score = 54.7 bits (130), Expect = 3e-06
Identities = 32/106 (30%), Positives = 57/106 (53%)
Frame = -2
Query: 366 AEIAALKHGLTLLWNANVRRATCEVDCLDIVEALENDRYQFHALASELLDIRLLLDRDWT 187
AE++ + GL L W+ V + E+D L +V+ L+ + + + +IR L+R+W
Sbjct: 11 AELSGVHKGLALAWHYGVLKLKVEIDSLYVVQLLKGIKVVCNYNGLLISNIRQYLNREWE 70
Query: 186 VTLAYVPREANAAADCLAGLGASLLCPLTCLESPPQELQPILARDL 49
V++ ++ RE+N AAD LA L A+ L + +L +L D+
Sbjct: 71 VSIVHIYRESNFAADALAFLAANFPLGYHELGAASNDLLDMLYHDI 116
[16][TOP]
>UniRef100_Q9SI81 F23N19.5 n=1 Tax=Arabidopsis thaliana RepID=Q9SI81_ARATH
Length = 233
Score = 54.3 bits (129), Expect = 4e-06
Identities = 36/109 (33%), Positives = 48/109 (44%)
Frame = -2
Query: 366 AEIAALKHGLTLLWNANVRRATCEVDCLDIVEALENDRYQFHALASELLDIRLLLDRDWT 187
AE+ + +GL + W+ + R EVD +V L H L+ + L RDW
Sbjct: 117 AELWGVYYGLFMAWDRGITRLELEVDSEMVVGFLRTGIGSSHPLSFLVRMCHGFLSRDWI 176
Query: 186 VTLAYVPREANAAADCLAGLGASLLCPLTCLESPPQELQPILARDLLAL 40
V + +V REAN AD LA L SPP L IL D L +
Sbjct: 177 VRIGHVYREANRLADGLANYAFDLPLGYHAFASPPNSLDSILRDDELGI 225
[17][TOP]
>UniRef100_Q9SJZ8 Putative non-LTR retroelement reverse transcriptase n=1
Tax=Arabidopsis thaliana RepID=Q9SJZ8_ARATH
Length = 321
Score = 53.9 bits (128), Expect = 5e-06
Identities = 41/121 (33%), Positives = 53/121 (43%)
Frame = -2
Query: 411 ISGFYAGSLGGDALRAEIAALKHGLTLLWNANVRRATCEVDCLDIVEALENDRYQFHALA 232
I GF A AE+ + +GL + W RR EVD +V L H L+
Sbjct: 190 IGGFAVNIGVCSAPLAELWGVYYGLFIAWGRGARRVELEVDSKMVVGFLTTGIADSHPLS 249
Query: 231 SELLDIRLLLDRDWTVTLAYVPREANAAADCLAGLGASLLCPLTCLESPPQELQPILARD 52
L L + W V +++V REAN AD LA SL L LES P + IL D
Sbjct: 250 FLLRLCYDFLSKGWIVRISHVYREANRLADGLANYAFSLSLGLHLLESRPDVVSSILLDD 309
Query: 51 L 49
+
Sbjct: 310 V 310
[18][TOP]
>UniRef100_A2Q681 Ribonuclease H n=1 Tax=Medicago truncatula RepID=A2Q681_MEDTR
Length = 170
Score = 53.9 bits (128), Expect = 5e-06
Identities = 34/107 (31%), Positives = 50/107 (46%)
Frame = -2
Query: 372 LRAEIAALKHGLTLLWNANVRRATCEVDCLDIVEALENDRYQFHALASELLDIRLLLDRD 193
L E+ A+ +GL L W+ R T E D ++ + ++ +H A L IR L+ RD
Sbjct: 54 LLVELYAILNGLQLAWDLGFRIITLEPDYKSALDLILDNDTTYHPHAIVLGRIRTLMSRD 113
Query: 192 WTVTLAYVPREANAAADCLAGLGASLLCPLTCLESPPQELQPILARD 52
W++ + RE N AD LA A L SPP + +L D
Sbjct: 114 WSLLFNHTLREGNECADWLAKYDAQSDVSLKLWVSPPPQFAHVLLAD 160